Citrus Sinensis ID: 016224

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---
Protein Sequence
MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVIIC
Secondary Structure (PSIPRED)
cccccccccEEEEEEEccccccccccccccccccccEEEHHHHcccccccccccccccccccccccccccEEEEEEcccccccEEccccccEEEccccccccccccEEEEEEEEEEccccEEEEEcccccEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEccccEEEEEEEcccEEEEEcccEEEEEEcccccEEEcccccccEEEEEEcccEEEEEcccccEEEEEcccccccccccEEEEcccccEEEEEEcccEEEEEcccccEEEEEcccccEEEEEccccccEEEEEEcccEEEEccccccEEEEEccccccEEEcccccccccEEEEEEccccccccEEEEEEccccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccEcccccccEEEEEEEcccccccccEEEEcccccEEEEEEcccccccEccEcccccccccccccccccccccccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccHHEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEccccEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccEEEEcccccEEEEEEcccccHHHHHHHHcccccccEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEEEcccccccEEEEEEccccEEEEEEccccccc
Coil and Loop (DISEMBL)
mdfdahggnkrvfhrlgggggdggggglstaDTRQKVCNYwragkcnrfpcpylhrelplppaatangAAAKRFanntwgrnnnfnnhsnnyragnsknsninnravIKTDILCRnwvqgncmygekckflhswtvgdgfKLLTQLEghqkvvsgitlpsgsdklysgskdetvrvwdcasgqcagvinlggevgcmisegpwifIGVTNFVKAWNTqtntdlslsgpvgQVYAMAVGNDllfagtqdgaiLAWKFnvttncfepaaslkghSLAVVSLVVGANKlysgsmdnsiRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFatdsgnlevtythneEHGVLAlcgmpdsegkpvllcscndnsvrfydlpsviic
Flexible Loop (DISEMBL)
MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRagnsknsninnRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVsgitlpsgsdklysgsKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNdnsvrfydlpsviic
Low Complexity Region (SEG)
MDFDAHGGNKRVFHRLgggggdgggggLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPaatangaaakrfanntwgrnnnfnnhsnnYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVIIC
Disordered region (IsUnstruct)
***********************************KVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWGR********************INNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG*DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII*
Disordered Region (DISOPRED)
********N****************************CNYWRAGKCNRFPCPYLHREL*******************TWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVIIC
Disordered Region (DISEMBL)
MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVIIC
Disordered Region (DISPRO)
*DFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS*IIC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVIIC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	393	2.2.26 [Sep-21-2011]
Q9FNZ2	430	Zinc finger CCCH domain-c	yes	no	0.956	0.874	0.666	1e-155
Q9FNZ1	443	Zinc finger CCCH domain-c	no	no	0.979	0.869	0.641	1e-151
Q0DYP5	435	Zinc finger CCCH domain-c	yes	no	0.954	0.862	0.598	1e-137
Q9FE91	419	Zinc finger CCCH domain-c	no	no	0.704	0.661	0.514	1e-77
Q9FKR9	472	Zinc finger CCCH domain-c	no	no	0.704	0.586	0.505	2e-76
P90648	732	Myosin heavy chain kinase	no	no	0.577	0.310	0.306	2e-20
P42527	1146	Myosin heavy chain kinase	no	no	0.564	0.193	0.303	1e-18
P87053	605	F-box/WD repeat-containin	yes	no	0.661	0.429	0.267	8e-17
Q969H0	707	F-box/WD repeat-containin	yes	no	0.709	0.394	0.243	4e-16
Q54KL5	335	WD repeat-containing prot	no	no	0.531	0.623	0.276	8e-16

>sp|Q9FNZ2|C3H48_ARATH Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1

 Score =  548 bits (1411), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 264/396 (66%), Positives = 313/396 (79%), Gaps = 20/396 (5%)

Query: 1   MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPL 60
           MD D +GGNKRVF RLGGG          T D+ QKVC +WRAG+CNR+PCPYLHRELP 
Sbjct: 1   MDLDMNGGNKRVFQRLGGGSNR------PTTDSNQKVCFHWRAGRCNRYPCPYLHRELPG 54

Query: 61  PPAATANGAAAKR------FANNTWGRNNNFNNHSNNY-RAGNSKNSNINNRAVIKTDIL 113
           P +     ++ KR      FA  +  R   F+  +NN+ R G        NR V KT+ L
Sbjct: 55  PGSGPVAASSNKRVADESGFAGPSHRRGPGFSGTANNWGRFGG-------NRTVTKTEKL 107

Query: 114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET 173
           C+ WV GNC YG+KC++LH W+ GD F LLTQL+GHQKVV+GI LPSGSDKLY+ SKDET
Sbjct: 108 CKFWVDGNCPYGDKCRYLHCWSKGDSFSLLTQLDGHQKVVTGIALPSGSDKLYTASKDET 167

Query: 174 VRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVY 233
           VR+WDCASGQC GV+NLGGEVGC+ISEGPW+ +G+ N VKAWN Q N DLSL+GPVGQVY
Sbjct: 168 VRIWDCASGQCTGVLNLGGEVGCIISEGPWLLVGMPNLVKAWNIQNNADLSLNGPVGQVY 227

Query: 234 AMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDN 293
           ++ VG DLLFAGTQDG+IL W++N TT+CF+PAASL GH+LAVVSL VGAN+LYSG+MDN
Sbjct: 228 SLVVGTDLLFAGTQDGSILVWRYNSTTSCFDPAASLLGHTLAVVSLYVGANRLYSGAMDN 287

Query: 294 SIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHN 353
           SI+VW+L+ LQCIQTLTEHTSVVMSL+CWDQFLLSCSLD T+K+W AT+ GNLEVTYTH 
Sbjct: 288 SIKVWSLDNLQCIQTLTEHTSVVMSLICWDQFLLSCSLDNTVKIWAATEGGNLEVTYTHK 347

Query: 354 EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
           EE+GVLALCG+ D+E KPVLLCSCNDNS+  YDLPS
Sbjct: 348 EEYGVLALCGVHDAEAKPVLLCSCNDNSLHLYDLPS 383

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNZ1|C3H63_ARATH Zinc finger CCCH domain-containing protein 63 OS=Arabidopsis thaliana GN=ZFWD2 PE=2 SV=1

 Score =  534 bits (1375), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 254/396 (64%), Positives = 311/396 (78%), Gaps = 11/396 (2%)

Query: 1   MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPL 60
           MDFD +GGNKRVF+RLGGGGG      ++  DTRQKVC +WRAG+CNR PCPYLHRELP 
Sbjct: 1   MDFDLNGGNKRVFNRLGGGGGSTRP--MAPTDTRQKVCFHWRAGRCNRSPCPYLHRELP- 57

Query: 61  PPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNIN------NRAVIKTDILC 114
                        + N      + F   S+    G + NS+ +      NR V KT+ +C
Sbjct: 58  --GPGPGQGQGPGYTNKRVAEESGFAGPSHRRGPGFNGNSSSSWGRFGGNRTVTKTEKVC 115

Query: 115 RNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETV 174
             WV GNC YG+KC++LH W+ G+ F LLTQL+GH+K+VSGI LPSGSDKLY+GSKDET+
Sbjct: 116 NFWVDGNCTYGDKCRYLHCWSKGESFALLTQLDGHEKLVSGIALPSGSDKLYTGSKDETL 175

Query: 175 RVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYA 234
           RVWDCASGQC GV+ LGGE+GC++SEGPW+ +G+ N VKAWN +TN D SLSGPVGQVY+
Sbjct: 176 RVWDCASGQCTGVLKLGGEIGCVLSEGPWLLVGMPNLVKAWNIETNADQSLSGPVGQVYS 235

Query: 235 MAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNS 294
           + VG DLLFAGTQDG+ILAW++N  TNCFEP+ASL GH+LAVV+L VGAN+LYSGSMD +
Sbjct: 236 LVVGTDLLFAGTQDGSILAWRYNAATNCFEPSASLTGHTLAVVTLYVGANRLYSGSMDKT 295

Query: 295 IRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE 354
           I+VW+L+ LQCIQTLT+H+SVVMSL+CWDQFLLSCSLD T+K+W A + GNLEVTYTH E
Sbjct: 296 IKVWSLDNLQCIQTLTDHSSVVMSLICWDQFLLSCSLDNTVKIWAAIEGGNLEVTYTHKE 355

Query: 355 EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390
           EHGVLALCG+ D+E KPVLLC+CNDN++R YDLPS+
Sbjct: 356 EHGVLALCGVHDAEAKPVLLCACNDNTLRLYDLPSL 391

Arabidopsis thaliana (taxid: 3702)

>sp|Q0DYP5|C3H17_ORYSJ Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=Os02g0677700 PE=2 SV=2

 Score =  487 bits (1254), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 241/403 (59%), Positives = 293/403 (72%), Gaps = 28/403 (6%)

Query: 1   MDFDAHG--GNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHREL 58
           MD +  G  GNKRV HRLG   G       +++ T  KVC +WRAG+CNRFPCPYLH EL
Sbjct: 1   MDIETDGRFGNKRVHHRLGPANG------AASSSTSGKVCIHWRAGRCNRFPCPYLHSEL 54

Query: 59  PLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKT-------- 110
           P         A AKR + +  G N   N HS       +  +   N+             
Sbjct: 55  P--------EATAKRPSQSGGGGNVWRNPHSGGGGGRGAGGAGGPNKWGRGPGGADGGPR 106

Query: 111 ----DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY 166
               D  CR ++ G+C YGEKC++ HS+++ D   +LT L+GH+KVV+GI LP+GSDKLY
Sbjct: 107 HKVPDRPCRYFLAGDCSYGEKCRYPHSYSMSDSITMLTPLQGHEKVVTGIALPAGSDKLY 166

Query: 167 SGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS 226
           SGSKD TVR+WDC +GQCAGVIN+G E+GCMISEGPW+F+G+ + VK WN QT  +++L+
Sbjct: 167 SGSKDGTVRMWDCQTGQCAGVINMGREIGCMISEGPWLFVGIPDAVKVWNMQTQAEMNLT 226

Query: 227 GPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKL 286
           GP GQVYA+AVGN+LLFA TQDG ILAW+F+  TN FEPAASL GH LAVVSLVVGA +L
Sbjct: 227 GPTGQVYALAVGNELLFAATQDGRILAWRFSAATNGFEPAASLVGHQLAVVSLVVGAMRL 286

Query: 287 YSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNL 346
           YS SMD +IRVW+L TLQCIQTL++HT VVMS+LCWDQFLLSCSLD+TIKVW AT+SG+L
Sbjct: 287 YSASMDKTIRVWDLATLQCIQTLSDHTGVVMSVLCWDQFLLSCSLDQTIKVWAATESGSL 346

Query: 347 EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
           EVTYTH EEHG LAL GMPD++ KPVLLCS NDN+VR YDLPS
Sbjct: 347 EVTYTHKEEHGALALSGMPDAQSKPVLLCSLNDNTVRLYDLPS 389

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FE91|C3H62_ARATH Zinc finger CCCH domain-containing protein 62 OS=Arabidopsis thaliana GN=ZFWD4 PE=2 SV=1

 Score =  290 bits (742), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 145/282 (51%), Positives = 189/282 (67%), Gaps = 5/282 (1%)

Query: 113 LCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE 172
           +C+ W  G C  GE+C+FLHSW+   G  ++  LEGH K + GI LP GSDKL+S S D 
Sbjct: 94  VCKYWKDGKCKRGEQCQFLHSWSCFPGLAMVASLEGHNKELKGIALPEGSDKLFSVSIDG 153

Query: 173 TVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSL--SGPVG 230
           T+RVWDC SGQC   INL  E G +ISEGPW+F+G+ N +KA+N QT+ DL L  +G VG
Sbjct: 154 TLRVWDCNSGQCVHSINLDAEAGSLISEGPWVFLGLPNAIKAFNVQTSQDLHLQAAGVVG 213

Query: 231 QVYAMAVGNDLLFAGTQDGAILAWKFNV--TTNCFEPAASLKGHSLAVVSLVVGANKLYS 288
           QV AM + N +LFAGT  G+IL WK      ++ F+   SL+GHS  V    VG   LYS
Sbjct: 214 QVNAMTIANGMLFAGTSSGSILVWKATTDSESDPFKYLTSLEGHSGEVTCFAVGGQMLYS 273

Query: 289 GSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEV 348
           GS+D +I++W+L TLQCI TL +HT  V SLLCWD+ L+S SLD TIKVW  +++G L+V
Sbjct: 274 GSVDKTIKMWDLNTLQCIMTLKQHTGTVTSLLCWDKCLISSSLDGTIKVWAYSENGILKV 333

Query: 349 TYTHNEEH-GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
             T  +E   V AL GM D+E KP++ CS  + +V  +DLPS
Sbjct: 334 VQTRRQEQSSVHALSGMHDAEAKPIIFCSYQNGTVGIFDLPS 375

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKR9|C3H59_ARATH Zinc finger CCCH domain-containing protein 59 OS=Arabidopsis thaliana GN=ZFWD3 PE=2 SV=1

 Score =  286 bits (731), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 141/279 (50%), Positives = 186/279 (66%), Gaps = 2/279 (0%)

Query: 113 LCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE 172
           +C  W  GNC  GEKC+FLHSW+   G  ++  LEGH+  + GI LP GSDKL+S S D 
Sbjct: 150 VCNFWKDGNCKKGEKCQFLHSWSCFPGLAMVAALEGHKNDIKGIALPQGSDKLFSVSGDG 209

Query: 173 TVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQV 232
           T+ +WDC SGQC   INL  E G +ISEGPW+F+G+ N VKA+N Q + D+ L G VGQV
Sbjct: 210 TLLIWDCNSGQCVRSINLQAEAGSLISEGPWVFLGLPNAVKAFNVQNSKDVHLEGVVGQV 269

Query: 233 YAMAVGNDLLFAGTQDGAILAWKF-NVTTNCFEPAASLKG-HSLAVVSLVVGANKLYSGS 290
           +AM   N +LFAGT  G+IL WK  +  ++ F+   SL+G HS  V   VVG   LYSGS
Sbjct: 270 HAMTAANGMLFAGTSSGSILVWKATDSESDPFKYLTSLEGHHSGEVTCFVVGGEVLYSGS 329

Query: 291 MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTY 350
           +D +I+VW+L TLQC  TL +H   V SLLCWD+ L+S SLD TIK+W  +++ +L+V  
Sbjct: 330 VDKTIKVWDLNTLQCRMTLKQHIGTVTSLLCWDKCLISSSLDGTIKLWACSENESLKVVQ 389

Query: 351 THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
           T  +E  V  LCGM D+E KP++ CS  + +V  +DLPS
Sbjct: 390 TRKQELSVHTLCGMHDAEAKPIMFCSYQNGAVGIFDLPS 428

Arabidopsis thaliana (taxid: 3702)

>sp|P90648|MHCKB_DICDI Myosin heavy chain kinase B OS=Dictyostelium discoideum GN=mhkB PE=2 SV=1

 Score =  100 bits (250), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 116/245 (47%), Gaps = 18/245 (7%)

Query: 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE---VGCMISEGP 202
           L+GH+  V  I        L+SGS D +++VWD    +C  +  L G    V  ++    
Sbjct: 498 LKGHEGPVESICY--NDQYLFSGSSDHSIKVWDLKKLRC--IFTLEGHDKPVHTVLLNDK 553

Query: 203 WIFIGVTN-FVKAWNTQT-NTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTT 260
           ++F G ++  +K W+ +T     +L      V  + +    LF+G+ D  I  W      
Sbjct: 554 YLFSGSSDKTIKVWDLKTLECKYTLESHARAVKTLCISGQYLFSGSNDKTIKVWDLKT-- 611

Query: 261 NCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLL 320
             F    +LKGH+  V ++ +    LYSGS D +IRVWNL++L+C  TL  H   V  ++
Sbjct: 612 --FRCNYTLKGHTKWVTTICILGTNLYSGSYDKTIRVWNLKSLECSATLRGHDRWVEHMV 669

Query: 321 CWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN 380
             D+ L + S D TIK+W   D   L    T  E H     C     + K V+ CS +D 
Sbjct: 670 ICDKLLFTASDDNTIKIW---DLETLRCNTTL-EGHNATVQCLAVWEDKKCVISCS-HDQ 724

Query: 381 SVRFY 385
           S+R +
Sbjct: 725 SIRVW 729

Phosphorylates threonine in the C-terminal tail region of myosin II heavy chain. This phosphorylation is critical in regulating the assembly and disassembly of myosin II filament.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 7

>sp|P42527|MHCKA_DICDI Myosin heavy chain kinase A OS=Dictyostelium discoideum GN=mhkA PE=1 SV=2

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 113/237 (47%), Gaps = 15/237 (6%)

Query: 134  WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL--- 190
            + V D +K L  + GH+K +  I     S+ +++ S D T++V    SG    +  L   
Sbjct: 896  FDVNDNWKCLYTVNGHRKSIESIA--CNSNYIFTSSPDNTIKVHIIRSGNTKCIETLVGH 953

Query: 191  GGEVGCMISEGPWIFI-GVTNFVKAWNTQTNTDLSLSGPVGQVY--AMAVGNDLLFAGTQ 247
             GEV C+++   ++F       +K W+  T  ++     V   Y   +A+    LF+G  
Sbjct: 954  TGEVNCVVANEKYLFSCSYDKTIKVWDLSTFKEIKSFEGVHTKYIKTLALSGRYLFSGGN 1013

Query: 248  DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQ 307
            D  I  W     +  F    +++GH   V+SL   A+ L+S S DN I++W+L    CI 
Sbjct: 1014 DQIIYVWDTETLSMLF----NMQGHEDWVLSLHCTASYLFSTSKDNVIKIWDLSNFSCID 1069

Query: 308  TLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGM 364
            TL  H + V S +  D++L S S D +IKVW   D   LE  YT  + H +   C M
Sbjct: 1070 TLKGHWNSVSSCVVKDRYLYSGSEDNSIKVW---DLDTLECVYTIPKSHSLGVKCLM 1123

Phosphorylates threonine in the C-terminal tail region of myosin II heavy chain. This phosphorylation is critical in regulating the assembly and disassembly of myosin II filament. Requires autophosphorylation for activity.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 7

>sp|P87053|POF1_SCHPO F-box/WD repeat-containing protein pof1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pof1 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 128/277 (46%), Gaps = 17/277 (6%)

Query: 83  NNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKL 142
           +++   SN     + K  + N+ +        R W +   +Y E+C+   +W  G   ++
Sbjct: 211 DDYPTSSNEETISSVKPPSPNSDSKFFLPFKTRPWKE---VYAERCRVECNWRHGRCRQV 267

Query: 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI--NLGGEVGCMISE 200
           +  L GH   V  + L    + L SGS D T+R+W+ A+ Q   ++  +  G       +
Sbjct: 268 V--LSGHSDGVMCLQLVR--NILASGSYDATIRLWNLATFQQVALLEGHSSGVTCLQFDQ 323

Query: 201 GPWIFIGVTNFVKAWNTQTNTDLS-LSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVT 259
              I   +   ++ WN +T+  +S L G    V  +   + LL +G+ D  +  W F+  
Sbjct: 324 CKLISGSMDKTIRIWNYRTSECISILHGHTDSVLCLTFDSTLLVSGSADCTVKLWHFSGG 383

Query: 260 TNCFEPAASLKGHSLAVVSLVVGANK--LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVM 317
                   +L+GH+  V S+ +  ++  + SGS D++I++W+LET  C+ T + H   V 
Sbjct: 384 KRI-----TLRGHTGPVNSVRIIRDRGLVLSGSDDSTIKIWSLETNTCLHTFSAHIGPVQ 438

Query: 318 SLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE 354
           SL   D  L SCSLD TIK W       +   + H E
Sbjct: 439 SLALADSRLFSCSLDGTIKQWDIEKKKCVHTLFGHIE 475

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Required for the inactivation of zip1 via ubiquitination.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q969H0|FBXW7_HUMAN F-box/WD repeat-containing protein 7 OS=Homo sapiens GN=FBXW7 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 135/329 (41%), Gaps = 50/329 (15%)

Query: 101 NINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGIT-LP 159
           +I  R VIK   +   W      Y  + +   +W  G+  K    L+GH   V  IT L 
Sbjct: 335 HIKRRKVIKPGFIHSPW---KSAYIRQHRIDTNWRRGE-LKSPKVLKGHDDHV--ITCLQ 388

Query: 160 SGSDKLYSGSKDETVRVWDCASGQCAGVI--NLGGEVGCMISEGPWIFIGVTNFVKAWNT 217
              +++ SGS D T++VW   +G+C   +  + GG     + +   I       +K WN 
Sbjct: 389 FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNA 448

Query: 218 QTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWK--------------------- 255
           +T   + +L G    V  M +    + +G++D  +  W                      
Sbjct: 449 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ 508

Query: 256 ----------FNVTTNCFEPAA-----SLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNL 300
                     ++     ++P       +L+GH+  V SL      + SGS+D SIRVW++
Sbjct: 509 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV 568

Query: 301 ETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLA 360
           ET  CI TLT H S+   +   D  L+S + D T+K+W       L+     N+    + 
Sbjct: 569 ETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 628

Query: 361 LCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
                    K  ++ S +D +V+ +DL +
Sbjct: 629 CLQF----NKNFVITSSDDGTVKLWDLKT 653

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. Involved in the degradation of cyclin-E, MYC, NOTCH1 released notch intracellular domain (NICD), and probably PSEN1.

Homo sapiens (taxid: 9606)

>sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1

 Score = 85.1 bits (209), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 108/224 (48%), Gaps = 15/224 (6%)

Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K +  W V  G K++  L+GH++ V G++    S+ + SGS DE VR+WD  +G+C  +I
Sbjct: 110 KTIKIWDVESG-KMVKTLKGHKEYVFGVSFNPQSNLIVSGSFDENVRIWDVNTGECTKMI 168

Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
           +   +    +    +G  +  G  +  V+ W+T T    NT  +  G        +    
Sbjct: 169 SAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPNGK 228

Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSL--VVGANKLYSGSMDNSIRVW 298
            + AGT D  +  W +N    C +     K     + S   V     + +GS DN I ++
Sbjct: 229 FVLAGTLDNTLRLWSYNNNKKCLKTYTGHKNEKYCIFSTFSVTCGKWIVTGSEDNLIYIY 288

Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
           NL+T + +QTL  H  VV+++ C   +  + S +L  D+++K+W
Sbjct: 289 NLQTREIVQTLAGHEDVVLTVACHPTENIIASGALEKDRSVKIW 332

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	393
297799450	667	hypothetical protein ARALYDRAFT_329122 [	0.959	0.565	0.673	1e-155
224122464	452	predicted protein [Populus trichocarpa]	0.984	0.856	0.683	1e-155
255539579	445	F-box and wd40 domain protein, putative	0.964	0.851	0.694	1e-154
2980806	668	putative protein [Arabidopsis thaliana]	0.959	0.564	0.664	1e-154
225455491	442	PREDICTED: zinc finger CCCH domain-conta	0.946	0.841	0.680	1e-153
30686888	430	zinc finger CCCH domain-containing prote	0.956	0.874	0.666	1e-153
356559882	427	PREDICTED: zinc finger CCCH domain-conta	0.951	0.875	0.681	1e-153
356530911	426	PREDICTED: zinc finger CCCH domain-conta	0.951	0.877	0.670	1e-152
15242242	437	zinc finger CCCH domain-containing prote	0.977	0.878	0.643	1e-149
79330593	443	zinc finger CCCH domain-containing prote	0.979	0.869	0.641	1e-149

>gi|297799450|ref|XP_002867609.1| hypothetical protein ARALYDRAFT_329122 [Arabidopsis lyrata subsp. lyrata] gi|297313445|gb|EFH43868.1| hypothetical protein ARALYDRAFT_329122 [Arabidopsis lyrata subsp. lyrata]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 266/395 (67%), Positives = 315/395 (79%), Gaps = 18/395 (4%)

Query: 1   MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPL 60
           MD D +GGNKRVF RLGGG          T D+ QKVC +WRAG+CNR+PCPYLHRELP 
Sbjct: 1   MDLDMNGGNKRVFQRLGGGSNR------PTTDSNQKVCFHWRAGRCNRYPCPYLHRELPG 54

Query: 61  P---PAATANGAAAKR-FANNTWGRNNNFNNHSNNY-RAGNSKNSNINNRAVIKTDILCR 115
           P   P++T    A +  FA  +  R   F+  +NN+ R G        NR V KT+ LC+
Sbjct: 55  PAPGPSSTNKRVADESGFAGPSHRRGPGFSGTANNWGRFGG-------NRTVTKTEKLCK 107

Query: 116 NWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVR 175
            WV GNC YG+KC++LH W+ GD F LLTQL+GHQKV++GI LPSGSDKLY+ SKDETVR
Sbjct: 108 FWVDGNCPYGDKCRYLHCWSNGDSFSLLTQLDGHQKVITGIALPSGSDKLYTASKDETVR 167

Query: 176 VWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAM 235
           +WDCASGQC GV+NLGGEVGCMISEGPW+ +G+ N VKAWN Q N DLSL+GPVGQVY++
Sbjct: 168 IWDCASGQCTGVLNLGGEVGCMISEGPWLLVGMPNLVKAWNIQNNVDLSLTGPVGQVYSL 227

Query: 236 AVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSI 295
            VG DLLFAGTQDG+IL WK+N TT+CF+PAASL GH+LAVVSL VGAN+LYSG+MDNSI
Sbjct: 228 VVGTDLLFAGTQDGSILVWKYNSTTSCFDPAASLMGHTLAVVSLYVGANRLYSGAMDNSI 287

Query: 296 RVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE 355
           +VW+L+ LQCIQTLTEHTSVVMSL+CWDQFLLSCSLD T+K+W AT+ GNLEVTYTH EE
Sbjct: 288 KVWSLDNLQCIQTLTEHTSVVMSLICWDQFLLSCSLDNTVKIWAATEGGNLEVTYTHKEE 347

Query: 356 HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390
           +GVLALCG+ D+E KPVLLCSCNDNS+  YDLPS+
Sbjct: 348 YGVLALCGVHDAEAKPVLLCSCNDNSLHLYDLPSM 382

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122464|ref|XP_002318843.1| predicted protein [Populus trichocarpa] gi|222859516|gb|EEE97063.1| predicted protein [Populus trichocarpa]

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 279/408 (68%), Positives = 320/408 (78%), Gaps = 21/408 (5%)

Query: 1   MDFDAHGGN-----KRVFHRLGGGGG--DGGGGGLSTADTRQKVCNYWRAGKCNRFPCPY 53
           MD D +GGN     KRVFHRLGGG    D            QKVC +WRAGKCNRFPCP+
Sbjct: 1   MDLDYNGGNTTNTNKRVFHRLGGGKSVNDTSNQHNHQHQQNQKVCYHWRAGKCNRFPCPF 60

Query: 54  LHRELPLPPA-ATANGA------AAKRFANNTW----GRNNNFNNHSNNY-RAGNSKNSN 101
           LHRELP PP  A+ NG       A + FA N      GR    +N+SN++ R GN    +
Sbjct: 61  LHRELPAPPPHASVNGGGGGGGGAKRGFAGNDSSSFSGRRGGNSNYSNSWGRFGN--KGD 118

Query: 102 INNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG 161
           +     +  + +C  WVQGNC +G+KC++LHSW++GDGF L+TQLEGHQKV+SGI LPSG
Sbjct: 119 VRGVKRVSVEKVCNFWVQGNCSFGDKCRYLHSWSLGDGFSLVTQLEGHQKVISGIALPSG 178

Query: 162 SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNT 221
           SDKLY+GSKDETVRVWDC SGQC GV+NLGGEVGCMISEGPWIF+G+ N VKAWNTQTN 
Sbjct: 179 SDKLYTGSKDETVRVWDCQSGQCTGVVNLGGEVGCMISEGPWIFVGLPNVVKAWNTQTNA 238

Query: 222 DLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV 281
           DLSL+GP+GQVYA+ VGNDLLFAGTQDG+IL WKFN  T  FEPA SLK H +AVVSLVV
Sbjct: 239 DLSLNGPIGQVYALVVGNDLLFAGTQDGSILVWKFNAATYNFEPAVSLKDHKMAVVSLVV 298

Query: 282 GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFAT 341
           GAN+LYSGSMD+SI+VW+LETLQCIQTLT+HTSVVMSLLCW+QFLLSCSLD+TIKVW AT
Sbjct: 299 GANRLYSGSMDHSIKVWSLETLQCIQTLTDHTSVVMSLLCWEQFLLSCSLDQTIKVWAAT 358

Query: 342 DSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
           +SGNLEVT+THNEEHG+L LCGM D EGKPVLLCS NDNSV  YDLPS
Sbjct: 359 ESGNLEVTFTHNEEHGLLTLCGMHDPEGKPVLLCSSNDNSVHLYDLPS 406

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539579|ref|XP_002510854.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223549969|gb|EEF51456.1| F-box and wd40 domain protein, putative [Ricinus communis]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 284/409 (69%), Positives = 322/409 (78%), Gaps = 30/409 (7%)

Query: 1   MDFDAHGGN---KRVFHRLGGGGGDGGGGGLSTADTRQ-KVCNYWRAGKCNRFPCPYLHR 56
           MD DA GGN    RVF+RLGG          ST D RQ KVC++WRAG+CNRFPCPYLHR
Sbjct: 1   MDLDAQGGNTNSNRVFNRLGGAQLSS-----STNDPRQQKVCHHWRAGRCNRFPCPYLHR 55

Query: 57  ELPLPPAATANG--------AAAKRFANNTWG--------RNNNFNNHSNNYRAGNSKNS 100
           ELP PP    +         A +KR  +N  G        R+ NFNN S+  R GN+   
Sbjct: 56  ELPPPPPPHGSNGHSSSNNNAPSKRGFSNDSGFSGPSGSRRSGNFNNASSWGRVGNN--- 112

Query: 101 NINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS 160
             +N+ + KT+ +C  WVQG C YG+KC+FLHSW +G+ F LLTQL+GHQKVV+GI LPS
Sbjct: 113 --SNKVLRKTEKVCNFWVQGKCSYGDKCRFLHSWNLGESFSLLTQLDGHQKVVTGIALPS 170

Query: 161 GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN 220
           GSDKLY+GSKDETVRVWDC SGQC  VI LGGEVGCMISEGPWIF+G+ N VKAWNTQTN
Sbjct: 171 GSDKLYTGSKDETVRVWDCQSGQCMAVIQLGGEVGCMISEGPWIFVGIPNVVKAWNTQTN 230

Query: 221 TDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLV 280
           TDLSL+GPVGQVYA+ VGNDLLFAGTQDGAIL WK+N  T  FEPAASL GH++AVVSLV
Sbjct: 231 TDLSLTGPVGQVYALVVGNDLLFAGTQDGAILVWKYNAATFNFEPAASLPGHTVAVVSLV 290

Query: 281 VGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFA 340
           VGAN+LYSGSMD+SIRVWNLETLQC+QTLT+HTSVVMS+LCWDQFLLSCSLD+ IKVW A
Sbjct: 291 VGANRLYSGSMDHSIRVWNLETLQCVQTLTDHTSVVMSVLCWDQFLLSCSLDQKIKVWAA 350

Query: 341 TDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
           T+SGNL+VTYTHNEEHG+L LCGM D EGKPVLLCSCNDNSVR  DLPS
Sbjct: 351 TESGNLDVTYTHNEEHGLLTLCGMHDLEGKPVLLCSCNDNSVRLLDLPS 399

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2980806|emb|CAA18182.1| putative protein [Arabidopsis thaliana]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 264/397 (66%), Positives = 314/397 (79%), Gaps = 20/397 (5%)

Query: 1   MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPL 60
           MD D +GGNKRVF RLGGG          T D+ QKVC +WRAG+CNR+PCPYLHRELP 
Sbjct: 1   MDLDMNGGNKRVFQRLGGGSNR------PTTDSNQKVCFHWRAGRCNRYPCPYLHRELPG 54

Query: 61  PPAATANGAAAKR------FANNTWGRNNNFNNHSNNY-RAGNSKNSNINNRAVIKTDIL 113
           P +     ++ KR      FA  +  R   F+  +NN+ R G        NR V KT+ L
Sbjct: 55  PGSGPVAASSNKRVADESGFAGPSHRRGPGFSGTANNWGRFGG-------NRTVTKTEKL 107

Query: 114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET 173
           C+ WV GNC YG+KC++LH W+ GD F LLTQL+GHQKVV+GI LPSGSDKLY+ SKDET
Sbjct: 108 CKFWVDGNCPYGDKCRYLHCWSKGDSFSLLTQLDGHQKVVTGIALPSGSDKLYTASKDET 167

Query: 174 VRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVY 233
           VR+WDCASGQC GV+NLGGEVGC+ISEGPW+ +G+ N VKAWN Q N DLSL+GPVGQVY
Sbjct: 168 VRIWDCASGQCTGVLNLGGEVGCIISEGPWLLVGMPNLVKAWNIQNNADLSLNGPVGQVY 227

Query: 234 AMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDN 293
           ++ VG DLLFAGTQDG+IL W++N TT+CF+PAASL GH+LAVVSL VGAN+LYSG+MDN
Sbjct: 228 SLVVGTDLLFAGTQDGSILVWRYNSTTSCFDPAASLLGHTLAVVSLYVGANRLYSGAMDN 287

Query: 294 SIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHN 353
           SI+VW+L+ LQCIQTLTEHTSVVMSL+CWDQFLLSCSLD T+K+W AT+ GNLEVTYTH 
Sbjct: 288 SIKVWSLDNLQCIQTLTEHTSVVMSLICWDQFLLSCSLDNTVKIWAATEGGNLEVTYTHK 347

Query: 354 EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390
           EE+GVLALCG+ D+E KPVLLCSCNDNS+  YDLPS+
Sbjct: 348 EEYGVLALCGVHDAEAKPVLLCSCNDNSLHLYDLPSM 384

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455491|ref|XP_002280396.1| PREDICTED: zinc finger CCCH domain-containing protein 48 [Vitis vinifera] gi|297741123|emb|CBI31854.3| unnamed protein product [Vitis vinifera]

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 281/413 (68%), Positives = 315/413 (76%), Gaps = 41/413 (9%)

Query: 1   MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPL 60
           MD D HG NKRVF RLG     G          + KVC +WRAG+CN+FPCPYLHRELP 
Sbjct: 1   MDVDEHG-NKRVFQRLGASNDSG---------KQHKVCYHWRAGRCNKFPCPYLHRELPA 50

Query: 61  PPAA-----TANGAAAKR----------FA--------NNTWGRNNNFNNHSNNYRAGN- 96
           PP        +NG+++KR          F+        N TWGR +          AGN 
Sbjct: 51  PPPQQHQPFISNGSSSKRPNQGVHDDRSFSGARRSPNFNPTWGRVHGAG-------AGNR 103

Query: 97  SKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGI 156
           ++ S   NR   K + LC  W+QGNC YGEKCKFLHSW+VGD F  LTQLEGHQKVVSGI
Sbjct: 104 AQGSGAGNRVFRKIEKLCNYWLQGNCSYGEKCKFLHSWSVGDCFSSLTQLEGHQKVVSGI 163

Query: 157 TLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWN 216
            LPSGSDKLY+GSKDETVR+WDC SGQC GV+NLGGEVGCMISEGPW+F+G+ N VKAW+
Sbjct: 164 ALPSGSDKLYTGSKDETVRIWDCQSGQCTGVVNLGGEVGCMISEGPWLFVGIPNVVKAWH 223

Query: 217 TQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV 276
           TQ NT+LSLSGP GQVYA+ VGNDLLFAG QDGAILAWKFN  +NCFEPAASLKGH+ +V
Sbjct: 224 TQNNTELSLSGPTGQVYALVVGNDLLFAGVQDGAILAWKFNAVSNCFEPAASLKGHTQSV 283

Query: 277 VSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIK 336
           ++LVVGAN+LYSGSMD SIRVWNLE LQC+QTLTEHTSVVMSLLCWDQFLLSCSLD T+K
Sbjct: 284 ITLVVGANRLYSGSMDRSIRVWNLENLQCLQTLTEHTSVVMSLLCWDQFLLSCSLDGTVK 343

Query: 337 VWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
           VW AT+SGNLEVTYTHNEE GVL LCGM D E KPVLLCSCNDN+VR YDLPS
Sbjct: 344 VWVATESGNLEVTYTHNEEQGVLYLCGMHDPEAKPVLLCSCNDNTVRVYDLPS 396

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686888|ref|NP_194274.2| zinc finger CCCH domain-containing protein 48 [Arabidopsis thaliana] gi|75334157|sp|Q9FNZ2.1|C3H48_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 48; Short=AtC3H48; AltName: Full=Zinc finger CCCH domain and WD40 repeat-containing protein 1 gi|12057164|emb|CAC19847.1| zfwd1 protein [Arabidopsis thaliana] gi|109946599|gb|ABG48478.1| At4g25440 [Arabidopsis thaliana] gi|332659660|gb|AEE85060.1| zinc finger CCCH domain-containing protein 48 [Arabidopsis thaliana]

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 264/396 (66%), Positives = 313/396 (79%), Gaps = 20/396 (5%)

Query: 1   MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPL 60
           MD D +GGNKRVF RLGGG          T D+ QKVC +WRAG+CNR+PCPYLHRELP 
Sbjct: 1   MDLDMNGGNKRVFQRLGGGSNR------PTTDSNQKVCFHWRAGRCNRYPCPYLHRELPG 54

Query: 61  PPAATANGAAAKR------FANNTWGRNNNFNNHSNNY-RAGNSKNSNINNRAVIKTDIL 113
           P +     ++ KR      FA  +  R   F+  +NN+ R G        NR V KT+ L
Sbjct: 55  PGSGPVAASSNKRVADESGFAGPSHRRGPGFSGTANNWGRFGG-------NRTVTKTEKL 107

Query: 114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET 173
           C+ WV GNC YG+KC++LH W+ GD F LLTQL+GHQKVV+GI LPSGSDKLY+ SKDET
Sbjct: 108 CKFWVDGNCPYGDKCRYLHCWSKGDSFSLLTQLDGHQKVVTGIALPSGSDKLYTASKDET 167

Query: 174 VRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVY 233
           VR+WDCASGQC GV+NLGGEVGC+ISEGPW+ +G+ N VKAWN Q N DLSL+GPVGQVY
Sbjct: 168 VRIWDCASGQCTGVLNLGGEVGCIISEGPWLLVGMPNLVKAWNIQNNADLSLNGPVGQVY 227

Query: 234 AMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDN 293
           ++ VG DLLFAGTQDG+IL W++N TT+CF+PAASL GH+LAVVSL VGAN+LYSG+MDN
Sbjct: 228 SLVVGTDLLFAGTQDGSILVWRYNSTTSCFDPAASLLGHTLAVVSLYVGANRLYSGAMDN 287

Query: 294 SIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHN 353
           SI+VW+L+ LQCIQTLTEHTSVVMSL+CWDQFLLSCSLD T+K+W AT+ GNLEVTYTH 
Sbjct: 288 SIKVWSLDNLQCIQTLTEHTSVVMSLICWDQFLLSCSLDNTVKIWAATEGGNLEVTYTHK 347

Query: 354 EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
           EE+GVLALCG+ D+E KPVLLCSCNDNS+  YDLPS
Sbjct: 348 EEYGVLALCGVHDAEAKPVLLCSCNDNSLHLYDLPS 383

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559882|ref|XP_003548225.1| PREDICTED: zinc finger CCCH domain-containing protein 48-like [Glycine max]

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 268/393 (68%), Positives = 314/393 (79%), Gaps = 19/393 (4%)

Query: 3   FDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPP 62
            D  GGNKRV++RLGG                QKVC +W+AGKCNR+PCP+LH ELP   
Sbjct: 1   MDVDGGNKRVYNRLGGDA------------KHQKVCFHWQAGKCNRYPCPFLHSELP-AN 47

Query: 63  AATANGAAAKRFANNTW----GRNNNFNN--HSNNYRAGNSKNSNINNRAVIKTDILCRN 116
           +  ANGA++KR  +N+      R+ +FNN       R G    +      V+K + +C  
Sbjct: 48  SHHANGASSKRAYDNSGFSGPRRSPSFNNTWGRGGSRGGGGAGAGAGRGVVVKAEKVCNY 107

Query: 117 WVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRV 176
           W+QGNC YGE+CKFLH+W+VGDGF LLTQLEGHQK VS I  PSGSDKLY+GS DET R+
Sbjct: 108 WIQGNCSYGERCKFLHTWSVGDGFSLLTQLEGHQKAVSAIAFPSGSDKLYTGSTDETARI 167

Query: 177 WDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMA 236
           WDC SG+C GVINLGGEVGCMISEGPW+F+G+ NFVKAWNTQ  ++LSL+GPVGQVYA+ 
Sbjct: 168 WDCQSGKCVGVINLGGEVGCMISEGPWVFVGIPNFVKAWNTQNLSELSLNGPVGQVYALV 227

Query: 237 VGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIR 296
           V ND+LFAGTQDG+ILAWKFNV TNCFEPAASLKGHS  VVSLVVGAN+LYSGSMDN+IR
Sbjct: 228 VNNDMLFAGTQDGSILAWKFNVATNCFEPAASLKGHSRGVVSLVVGANRLYSGSMDNTIR 287

Query: 297 VWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH 356
           VWNLETLQC+QTLTEHTSVVMS+LCWDQFLLSCSLDKT+KVW+AT+SGNLEVTYTHNEE+
Sbjct: 288 VWNLETLQCLQTLTEHTSVVMSVLCWDQFLLSCSLDKTVKVWYATESGNLEVTYTHNEEN 347

Query: 357 GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
           G+L LCGM DS+GKP+LLC+CNDN+V  YDLPS
Sbjct: 348 GILTLCGMHDSQGKPILLCACNDNTVHLYDLPS 380

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530911|ref|XP_003534022.1| PREDICTED: zinc finger CCCH domain-containing protein 48-like [Glycine max]

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 263/392 (67%), Positives = 309/392 (78%), Gaps = 18/392 (4%)

Query: 3   FDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPLPP 62
            D  GGNKRV++RLGG                QKVC +W+AGKCNR+PCP+LH E P   
Sbjct: 1   MDVDGGNKRVYNRLGGDA------------KHQKVCYHWQAGKCNRYPCPFLHSESP-AN 47

Query: 63  AATANGAAAKRFANNTW----GRNNNFNNH-SNNYRAGNSKNSNINNRAVIKTDILCRNW 117
           +  ANG ++KR  +N+      R+ NFNN        G           V+K + +C  W
Sbjct: 48  SHHANGTSSKRTYDNSGFSGPRRSPNFNNTWGRGGGRGGGGGGGAGRGVVVKAEKVCNYW 107

Query: 118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW 177
           +QG+C YGE+CKFLHSW+VGDGF LLTQLEGHQK VS I  PSGSDKLY+GS DET R+W
Sbjct: 108 IQGSCSYGERCKFLHSWSVGDGFSLLTQLEGHQKAVSAIAFPSGSDKLYTGSTDETARIW 167

Query: 178 DCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAV 237
           DC  G+C GVINLGGEVGCMISEGPW+F+G+ NFVKAWNTQ  ++LSL+GPVGQVYA+ V
Sbjct: 168 DCQCGKCVGVINLGGEVGCMISEGPWVFVGIPNFVKAWNTQNLSELSLNGPVGQVYALVV 227

Query: 238 GNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRV 297
            ND+LFAGTQDG+ILAWKFNV TNCFEPAASLKGHS  VVSLVVGAN+LYSGSMDN+I+V
Sbjct: 228 NNDMLFAGTQDGSILAWKFNVATNCFEPAASLKGHSRGVVSLVVGANRLYSGSMDNTIKV 287

Query: 298 WNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHG 357
           WNLETLQC+QTLTEHTSVVMS+LCWDQFLLSCSLDKT+KVW+AT+SGNLEVTY+HNEE+G
Sbjct: 288 WNLETLQCLQTLTEHTSVVMSVLCWDQFLLSCSLDKTVKVWYATESGNLEVTYSHNEENG 347

Query: 358 VLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
           +L LCGM DS+GKP+LLC+CNDN+V  YDLPS
Sbjct: 348 ILTLCGMHDSQGKPILLCACNDNTVHLYDLPS 379

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242242|ref|NP_200011.1| zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana] gi|10177733|dbj|BAB11046.1| unnamed protein product [Arabidopsis thaliana] gi|332008771|gb|AED96154.1| zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 254/395 (64%), Positives = 310/395 (78%), Gaps = 11/395 (2%)

Query: 1   MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPL 60
           MDFD +GGNKRVF+RLGGGGG      ++  DTRQKVC +WRAG+CNR PCPYLHRELP 
Sbjct: 1   MDFDLNGGNKRVFNRLGGGGGSTRP--MAPTDTRQKVCFHWRAGRCNRSPCPYLHRELP- 57

Query: 61  PPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNIN------NRAVIKTDILC 114
                        + N      + F   S+    G + NS+ +      NR V KT+ +C
Sbjct: 58  --GPGPGQGQGPGYTNKRVAEESGFAGPSHRRGPGFNGNSSSSWGRFGGNRTVTKTEKVC 115

Query: 115 RNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETV 174
             WV GNC YG+KC++LH W+ G+ F LLTQL+GH+K+VSGI LPSGSDKLY+GSKDET+
Sbjct: 116 NFWVDGNCTYGDKCRYLHCWSKGESFALLTQLDGHEKLVSGIALPSGSDKLYTGSKDETL 175

Query: 175 RVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYA 234
           RVWDCASGQC GV+ LGGE+GC++SEGPW+ +G+ N VKAWN +TN D SLSGPVGQVY+
Sbjct: 176 RVWDCASGQCTGVLKLGGEIGCVLSEGPWLLVGMPNLVKAWNIETNADQSLSGPVGQVYS 235

Query: 235 MAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNS 294
           + VG DLLFAGTQDG+ILAW++N  TNCFEP+ASL GH+LAVV+L VGAN+LYSGSMD +
Sbjct: 236 LVVGTDLLFAGTQDGSILAWRYNAATNCFEPSASLTGHTLAVVTLYVGANRLYSGSMDKT 295

Query: 295 IRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE 354
           I+VW+L+ LQCIQTLT+H+SVVMSL+CWDQFLLSCSLD T+K+W A + GNLEVTYTH E
Sbjct: 296 IKVWSLDNLQCIQTLTDHSSVVMSLICWDQFLLSCSLDNTVKIWAAIEGGNLEVTYTHKE 355

Query: 355 EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
           EHGVLALCG+ D+E KPVLLC+CNDN++R YDLPS
Sbjct: 356 EHGVLALCGVHDAEAKPVLLCACNDNTLRLYDLPS 390

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79330593|ref|NP_001032059.1| zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana] gi|75334156|sp|Q9FNZ1.1|C3H63_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 63; Short=AtC3H63; AltName: Full=Zinc finger CCCH domain and WD40 repeat-containing protein 2 gi|12057166|emb|CAC19848.1| zfwd2 protein [Arabidopsis thaliana] gi|332008772|gb|AED96155.1| zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 254/396 (64%), Positives = 311/396 (78%), Gaps = 11/396 (2%)

Query: 1   MDFDAHGGNKRVFHRLGGGGGDGGGGGLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPL 60
           MDFD +GGNKRVF+RLGGGGG      ++  DTRQKVC +WRAG+CNR PCPYLHRELP 
Sbjct: 1   MDFDLNGGNKRVFNRLGGGGGSTRP--MAPTDTRQKVCFHWRAGRCNRSPCPYLHRELP- 57

Query: 61  PPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNIN------NRAVIKTDILC 114
                        + N      + F   S+    G + NS+ +      NR V KT+ +C
Sbjct: 58  --GPGPGQGQGPGYTNKRVAEESGFAGPSHRRGPGFNGNSSSSWGRFGGNRTVTKTEKVC 115

Query: 115 RNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETV 174
             WV GNC YG+KC++LH W+ G+ F LLTQL+GH+K+VSGI LPSGSDKLY+GSKDET+
Sbjct: 116 NFWVDGNCTYGDKCRYLHCWSKGESFALLTQLDGHEKLVSGIALPSGSDKLYTGSKDETL 175

Query: 175 RVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYA 234
           RVWDCASGQC GV+ LGGE+GC++SEGPW+ +G+ N VKAWN +TN D SLSGPVGQVY+
Sbjct: 176 RVWDCASGQCTGVLKLGGEIGCVLSEGPWLLVGMPNLVKAWNIETNADQSLSGPVGQVYS 235

Query: 235 MAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNS 294
           + VG DLLFAGTQDG+ILAW++N  TNCFEP+ASL GH+LAVV+L VGAN+LYSGSMD +
Sbjct: 236 LVVGTDLLFAGTQDGSILAWRYNAATNCFEPSASLTGHTLAVVTLYVGANRLYSGSMDKT 295

Query: 295 IRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE 354
           I+VW+L+ LQCIQTLT+H+SVVMSL+CWDQFLLSCSLD T+K+W A + GNLEVTYTH E
Sbjct: 296 IKVWSLDNLQCIQTLTDHSSVVMSLICWDQFLLSCSLDNTVKIWAAIEGGNLEVTYTHKE 355

Query: 355 EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390
           EHGVLALCG+ D+E KPVLLC+CNDN++R YDLPS+
Sbjct: 356 EHGVLALCGVHDAEAKPVLLCACNDNTLRLYDLPSL 391

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	393
TAIR|locus:2131799	430	ZFWD1 "zinc finger WD40 repeat	0.974	0.890	0.647	2.9e-142
TAIR|locus:2173103	443	AT5G51980 [Arabidopsis thalian	0.984	0.873	0.631	8.9e-141
TAIR|locus:2155904	419	AT5G49200 [Arabidopsis thalian	0.704	0.661	0.514	6.5e-81
TAIR|locus:2164456	472	AT5G40880 [Arabidopsis thalian	0.704	0.586	0.505	5.2e-79
DICTYBASE|DDB_G0289115	732	mhkB "myosin heavy chain kinas	0.577	0.310	0.310	1.3e-24
DICTYBASE|DDB_G0286735	694	DDB_G0286735 "C3HC4-type zinc	0.534	0.302	0.333	2.6e-24
DICTYBASE|DDB_G0291231	1146	mhkA "myosin heavy chain kinas	0.615	0.211	0.288	7.7e-24
DICTYBASE|DDB_G0287273	335	wdr5 "WD40 repeat-containing p	0.531	0.623	0.285	6.3e-21
DICTYBASE|DDB_G0279507	516	plrg1 "putative RNA splicing f	0.597	0.455	0.285	2.4e-19
UNIPROTKB|F1N9W1	587	FBXW7 "Uncharacterized protein	0.671	0.449	0.282	2.5e-19

TAIR|locus:2131799 ZFWD1 "zinc finger WD40 repeat protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1391 (494.7 bits), Expect = 2.9e-142, P = 2.9e-142
 Identities = 252/389 (64%), Positives = 295/389 (75%)

Query:     1 MDFDAHGGNKRVFHRLXXXXXXXXXXXLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPL 60
             MD D +GGNKRVF RL             T D+ QKVC +WRAG+CNR+PCPYLHRELP 
Sbjct:     1 MDLDMNGGNKRVFQRLGGGSNR------PTTDSNQKVCFHWRAGRCNRYPCPYLHRELPG 54

Query:    61 PPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRAGNSKNSNINNRAVIKTDILCRNWVQG 120
             P                                  N+      NR V KT+ LC+ WV G
Sbjct:    55 PGSGPVAASSNKRVADESGFAGPSHRRGPGFSGTANNWGRFGGNRTVTKTEKLCKFWVDG 114

Query:   121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA 180
             NC YG+KC++LH W+ GD F LLTQL+GHQKVV+GI LPSGSDKLY+ SKDETVR+WDCA
Sbjct:   115 NCPYGDKCRYLHCWSKGDSFSLLTQLDGHQKVVTGIALPSGSDKLYTASKDETVRIWDCA 174

Query:   181 SGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND 240
             SGQC GV+NLGGEVGC+ISEGPW+ +G+ N VKAWN Q N DLSL+GPVGQVY++ VG D
Sbjct:   175 SGQCTGVLNLGGEVGCIISEGPWLLVGMPNLVKAWNIQNNADLSLNGPVGQVYSLVVGTD 234

Query:   241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNL 300
             LLFAGTQDG+IL W++N TT+CF+PAASL GH+LAVVSL VGAN+LYSG+MDNSI+VW+L
Sbjct:   235 LLFAGTQDGSILVWRYNSTTSCFDPAASLLGHTLAVVSLYVGANRLYSGAMDNSIKVWSL 294

Query:   301 ETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLA 360
             + LQCIQTLTEHTSVVMSL+CWDQFLLSCSLD T+K+W AT+ GNLEVTYTH EE+GVLA
Sbjct:   295 DNLQCIQTLTEHTSVVMSLICWDQFLLSCSLDNTVKIWAATEGGNLEVTYTHKEEYGVLA 354

Query:   361 LCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
             LCG+ D+E KPVLLCSCNDNS+  YDLPS
Sbjct:   355 LCGVHDAEAKPVLLCSCNDNSLHLYDLPS 383

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2173103 AT5G51980 [Arabidopsis thaliana (taxid:3702)]

 Score = 1377 (489.8 bits), Expect = 8.9e-141, P = 8.9e-141
 Identities = 249/394 (63%), Positives = 302/394 (76%)

Query:     1 MDFDAHGGNKRVFHRLXXXXXXXXXXXLSTADTRQKVCNYWRAGKCNRFPCPYLHRELPL 60
             MDFD +GGNKRVF+RL           ++  DTRQKVC +WRAG+CNR PCPYLHRELP 
Sbjct:     1 MDFDLNGGNKRVFNRLGGGGGSTRP--MAPTDTRQKVCFHWRAGRCNRSPCPYLHRELPG 58

Query:    61 P-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYRAGNSKNS--NIN-NRAVIKTDILCRN 116
             P P                             +  GNS +S      NR V KT+ +C  
Sbjct:    59 PGPGQGQGPGYTNKRVAEESGFAGPSHRRGPGFN-GNSSSSWGRFGGNRTVTKTEKVCNF 117

Query:   117 WVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRV 176
             WV GNC YG+KC++LH W+ G+ F LLTQL+GH+K+VSGI LPSGSDKLY+GSKDET+RV
Sbjct:   118 WVDGNCTYGDKCRYLHCWSKGESFALLTQLDGHEKLVSGIALPSGSDKLYTGSKDETLRV 177

Query:   177 WDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMA 236
             WDCASGQC GV+ LGGE+GC++SEGPW+ +G+ N VKAWN +TN D SLSGPVGQVY++ 
Sbjct:   178 WDCASGQCTGVLKLGGEIGCVLSEGPWLLVGMPNLVKAWNIETNADQSLSGPVGQVYSLV 237

Query:   237 VGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIR 296
             VG DLLFAGTQDG+ILAW++N  TNCFEP+ASL GH+LAVV+L VGAN+LYSGSMD +I+
Sbjct:   238 VGTDLLFAGTQDGSILAWRYNAATNCFEPSASLTGHTLAVVTLYVGANRLYSGSMDKTIK 297

Query:   297 VWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH 356
             VW+L+ LQCIQTLT+H+SVVMSL+CWDQFLLSCSLD T+K+W A + GNLEVTYTH EEH
Sbjct:   298 VWSLDNLQCIQTLTDHSSVVMSLICWDQFLLSCSLDNTVKIWAAIEGGNLEVTYTHKEEH 357

Query:   357 GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390
             GVLALCG+ D+E KPVLLC+CNDN++R YDLPS+
Sbjct:   358 GVLALCGVHDAEAKPVLLCACNDNTLRLYDLPSL 391

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2155904 AT5G49200 [Arabidopsis thaliana (taxid:3702)]

 Score = 760 (272.6 bits), Expect = 6.5e-81, Sum P(2) = 6.5e-81
 Identities = 145/282 (51%), Positives = 188/282 (66%)

Query:   113 LCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE 172
             +C+ W  G C  GE+C+FLHSW+   G  ++  LEGH K + GI LP GSDKL+S S D 
Sbjct:    94 VCKYWKDGKCKRGEQCQFLHSWSCFPGLAMVASLEGHNKELKGIALPEGSDKLFSVSIDG 153

Query:   173 TVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSL--SGPVG 230
             T+RVWDC SGQC   INL  E G +ISEGPW+F+G+ N +KA+N QT+ DL L  +G VG
Sbjct:   154 TLRVWDCNSGQCVHSINLDAEAGSLISEGPWVFLGLPNAIKAFNVQTSQDLHLQAAGVVG 213

Query:   231 QVYAMAVGNDLLFAGTQDGAILAWKFNVTTNC--FEPAASLKGHSLAVVSLVVGANKLYS 288
             QV AM + N +LFAGT  G+IL WK    +    F+   SL+GHS  V    VG   LYS
Sbjct:   214 QVNAMTIANGMLFAGTSSGSILVWKATTDSESDPFKYLTSLEGHSGEVTCFAVGGQMLYS 273

Query:   289 GSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEV 348
             GS+D +I++W+L TLQCI TL +HT  V SLLCWD+ L+S SLD TIKVW  +++G L+V
Sbjct:   274 GSVDKTIKMWDLNTLQCIMTLKQHTGTVTSLLCWDKCLISSSLDGTIKVWAYSENGILKV 333

Query:   349 TYTHNEEHG-VLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
               T  +E   V AL GM D+E KP++ CS  + +V  +DLPS
Sbjct:   334 VQTRRQEQSSVHALSGMHDAEAKPIIFCSYQNGTVGIFDLPS 375

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2164456 AT5G40880 [Arabidopsis thaliana (taxid:3702)]

 Score = 750 (269.1 bits), Expect = 5.2e-79, Sum P(2) = 5.2e-79
 Identities = 141/279 (50%), Positives = 186/279 (66%)

Query:   113 LCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE 172
             +C  W  GNC  GEKC+FLHSW+   G  ++  LEGH+  + GI LP GSDKL+S S D 
Sbjct:   150 VCNFWKDGNCKKGEKCQFLHSWSCFPGLAMVAALEGHKNDIKGIALPQGSDKLFSVSGDG 209

Query:   173 TVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQV 232
             T+ +WDC SGQC   INL  E G +ISEGPW+F+G+ N VKA+N Q + D+ L G VGQV
Sbjct:   210 TLLIWDCNSGQCVRSINLQAEAGSLISEGPWVFLGLPNAVKAFNVQNSKDVHLEGVVGQV 269

Query:   233 YAMAVGNDLLFAGTQDGAILAWKFNVT-TNCFEPAASLKGH-SLAVVSLVVGANKLYSGS 290
             +AM   N +LFAGT  G+IL WK   + ++ F+   SL+GH S  V   VVG   LYSGS
Sbjct:   270 HAMTAANGMLFAGTSSGSILVWKATDSESDPFKYLTSLEGHHSGEVTCFVVGGEVLYSGS 329

Query:   291 MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTY 350
             +D +I+VW+L TLQC  TL +H   V SLLCWD+ L+S SLD TIK+W  +++ +L+V  
Sbjct:   330 VDKTIKVWDLNTLQCRMTLKQHIGTVTSLLCWDKCLISSSLDGTIKLWACSENESLKVVQ 389

Query:   351 THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
             T  +E  V  LCGM D+E KP++ CS  + +V  +DLPS
Sbjct:   390 TRKQELSVHTLCGMHDAEAKPIMFCSYQNGAVGIFDLPS 428

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

DICTYBASE|DDB_G0289115 mhkB "myosin heavy chain kinase B" [Dictyostelium discoideum (taxid:44689)]

 Score = 276 (102.2 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
 Identities = 76/245 (31%), Positives = 117/245 (47%)

Query:   146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE---VGCMISEGP 202
             L+GH+  V  I        L+SGS D +++VWD    +C  +  L G    V  ++    
Sbjct:   498 LKGHEGPVESICY--NDQYLFSGSSDHSIKVWDLKKLRC--IFTLEGHDKPVHTVLLNDK 553

Query:   203 WIFIGVTN-FVKAWNTQT-NTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTT 260
             ++F G ++  +K W+ +T     +L      V  + +    LF+G+ D  I  W    T 
Sbjct:   554 YLFSGSSDKTIKVWDLKTLECKYTLESHARAVKTLCISGQYLFSGSNDKTIKVWDLK-TF 612

Query:   261 NCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLL 320
              C     +LKGH+  V ++ +    LYSGS D +IRVWNL++L+C  TL  H   V  ++
Sbjct:   613 RC---NYTLKGHTKWVTTICILGTNLYSGSYDKTIRVWNLKSLECSATLRGHDRWVEHMV 669

Query:   321 CWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN 380
               D+ L + S D TIK+W   D   L    T  E H     C     + K V+ CS +D 
Sbjct:   670 ICDKLLFTASDDNTIKIW---DLETLRCNTTL-EGHNATVQCLAVWEDKKCVISCS-HDQ 724

Query:   381 SVRFY 385
             S+R +
Sbjct:   725 SIRVW 729

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IDA

GO:0031037 "myosin II filament disassembly" evidence=IMP

GO:0005826 "actomyosin contractile ring" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000910 "cytokinesis" evidence=IMP

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0045159 "myosin II binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA;IC

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0016905 "myosin heavy chain kinase activity" evidence=IEA;IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

DICTYBASE|DDB_G0286735 DDB_G0286735 "C3HC4-type zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 287 (106.1 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 75/225 (33%), Positives = 119/225 (52%)

Query:   118 VQGNCMY-GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRV 176
             V GN ++ G   + +  W + + F+ L+ L      V  + + +G   L+SGS    ++V
Sbjct:   480 VIGNRLFSGSSDQTIRVWDL-ETFECLSVLRD-DNTVCALVIAAGY--LFSGSFQH-IKV 534

Query:   177 WDCASGQCAGVINLGGE-VGCMISEGPWIFIGVTNFVKAWNTQTNTDL--SLSGPVGQVY 233
             WD  + +C   +      V  +   G +++ G  N V+ W+   N +   ++ G  G +Y
Sbjct:   535 WDLETFECVQTLKGNSHWVRALTVSGGYLYSGAYNVVRVWDL-ANFECVQTIPGGSGSIY 593

Query:   234 AMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDN 293
             ++AV N  L AGT +  I+ W  N+ T  FE    L+GH  AV +L V   K YSGS D+
Sbjct:   594 SLAVSNRRLLAGTYENTIVVW--NLDT--FEIINKLEGHIGAVYTLAVSDKKFYSGSYDS 649

Query:   294 SIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVW 338
             +I+VWN ++L C+QTL  HTS V S++     + S S D +IKVW
Sbjct:   650 TIKVWN-DSLVCVQTLNRHTSSVESIVVSSGCVFSGSADNSIKVW 693

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

DICTYBASE|DDB_G0291231 mhkA "myosin heavy chain kinase A" [Dictyostelium discoideum (taxid:44689)]

 Score = 267 (99.0 bits), Expect = 7.7e-24, Sum P(2) = 7.7e-24
 Identities = 75/260 (28%), Positives = 126/260 (48%)

Query:   136 VGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG--QCAG-VINLGG 192
             V D +K L  + GH+K +  I     S+ +++ S D T++V    SG  +C   ++   G
Sbjct:   898 VNDNWKCLYTVNGHRKSIESIAC--NSNYIFTSSPDNTIKVHIIRSGNTKCIETLVGHTG 955

Query:   193 EVGCMISEGPWIF-IGVTNFVKAWNTQTNTDL-SLSGP-VGQVYAMAVGNDLLFAGTQDG 249
             EV C+++   ++F       +K W+  T  ++ S  G     +  +A+    LF+G  D 
Sbjct:   956 EVNCVVANEKYLFSCSYDKTIKVWDLSTFKEIKSFEGVHTKYIKTLALSGRYLFSGGNDQ 1015

Query:   250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTL 309
              I  W     +  F    +++GH   V+SL   A+ L+S S DN I++W+L    CI TL
Sbjct:  1016 IIYVWDTETLSMLF----NMQGHEDWVLSLHCTASYLFSTSKDNVIKIWDLSNFSCIDTL 1071

Query:   310 TEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEG 369
               H + V S +  D++L S S D +IKVW   D   LE  YT  + H +   C M  +  
Sbjct:  1072 KGHWNSVSSCVVKDRYLYSGSEDNSIKVW---DLDTLECVYTIPKSHSLGVKCLMVFNNQ 1128

Query:   370 KPVLLCSCNDNSVRFYDLPS 389
                ++ +  D S++ ++  S
Sbjct:  1129 ---IISAAFDGSIKVWEWQS 1145

GO:0016887 "ATPase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IEA;IDA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0004672 "protein kinase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IDA

GO:0051764 "actin crosslink formation" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IDA

GO:0051017 "actin filament bundle assembly" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0031037 "myosin II filament disassembly" evidence=IDA;IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0045159 "myosin II binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA;IC

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0016905 "myosin heavy chain kinase activity" evidence=IEA;IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 64/224 (28%), Positives = 109/224 (48%)

Query:   129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
             K +  W V  G K++  L+GH++ V G++    S+ + SGS DE VR+WD  +G+C  +I
Sbjct:   110 KTIKIWDVESG-KMVKTLKGHKEYVFGVSFNPQSNLIVSGSFDENVRIWDVNTGECTKMI 168

Query:   189 NLGGE--VGCMIS-EGPWIFIG-VTNFVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
             +   +   G   + +G  +  G     V+ W+T T    NT  +  G        +    
Sbjct:   169 SAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPNGK 228

Query:   241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLV-VGANK-LYSGSMDNSIRVW 298
              + AGT D  +  W +N    C +     K     + S   V   K + +GS DN I ++
Sbjct:   229 FVLAGTLDNTLRLWSYNNNKKCLKTYTGHKNEKYCIFSTFSVTCGKWIVTGSEDNLIYIY 288

Query:   299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
             NL+T + +QTL  H  VV+++ C   +  + S +L  D+++K+W
Sbjct:   289 NLQTREIVQTLAGHEDVVLTVACHPTENIIASGALEKDRSVKIW 332

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0279507 plrg1 "putative RNA splicing factor" [Dictyostelium discoideum (taxid:44689)]

 Score = 249 (92.7 bits), Expect = 2.4e-19, P = 2.4e-19
 Identities = 74/259 (28%), Positives = 127/259 (49%)

Query:   140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM-- 197
             +KL+  + GH   V  I +   ++   +GS D T++VWD ASG+    + L G V  +  
Sbjct:   197 WKLMRVISGHTGWVRAIAVDKSNEWFATGSTDNTIKVWDLASGELK--VTLTGHVSAIRG 254

Query:   198 ---ISEGPWIF-IGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGN--DLLFAGTQDGA 250
                 S  P++F +G  N V  W+ ++N  + +  G    VY++A+    D+LF+G +D  
Sbjct:   255 LEVSSRHPYLFSVGEDNKVLCWDLESNKQVRNYYGHRQGVYSVALHPTLDVLFSGGRDNC 314

Query:   251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVV-GAN-KLYSGSMDNSIRVWNLETLQCIQT 308
             +  W      N FE    +KGH   ++SL    A+ ++ SGSMD ++++W+L T     T
Sbjct:   315 VRVWDMRTRANIFE----MKGHKGTILSLKSQNADPQVISGSMDTTVKLWDLATGTSAAT 370

Query:   309 LTEHTSVVMSLLCWD-QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDS 367
             LT H   V S++  + ++  +      IK W   D   ++    HN     +AL    D+
Sbjct:   371 LTNHKKGVRSMVIHEKEYSFATGAADNIKQWKCPDGSFIKNLSGHNSIINAMALNA--DN 428

Query:   368 EGKPVLLCSCNDNSVRFYD 386
                 VL+   ++ S+ F+D
Sbjct:   429 ----VLVSGGDNGSISFWD 443

GO:0003674 "molecular_function" evidence=ND

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

UNIPROTKB|F1N9W1 FBXW7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 250 (93.1 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 79/280 (28%), Positives = 122/280 (43%)

Query:   112 ILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGSK 170
             I C  +     + G     L  W+   G K L  L GH     G+      D +  SGS 
Sbjct:   264 ITCLQFCGNRIVSGSDDNTLKVWSAVTG-KCLRTLVGH---TGGVWSSQMRDNIIISGST 319

Query:   171 DETVRVWDCASGQCAGVI-NLGGEVGCMISEGPWIFIGVTNF-VKAWNTQTNTDLS-LSG 227
             D T++VW+  +G+C   +      V CM      +  G  +  ++ W+ +T   L  L G
Sbjct:   320 DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMG 379

Query:   228 PVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLY 287
              V  V  +      + +G  D  +  W     T C     +L+GH+  V SL      + 
Sbjct:   380 HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-CLH---TLQGHTNRVYSLQFDGIHVV 435

Query:   288 SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLE 347
             SGS+D SIRVW++ET  CI TLT H S+   +   D  L+S + D T+K+W    +G   
Sbjct:   436 SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW-DIKTGQCL 494

Query:   348 VTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
              T     +H     C   +   K  ++ S +D +V+ +DL
Sbjct:   495 QTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDL 531

GO:0001570 "vasculogenesis" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0032876 "negative regulation of DNA endoreduplication" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

GO:0045741 "positive regulation of epidermal growth factor-activated receptor activity" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=IEA

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FNZ2	C3H48_ARATH	No assigned EC number	0.6666	0.9567	0.8744	yes	no
Q0DYP5	C3H17_ORYSJ	No assigned EC number	0.5980	0.9541	0.8620	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	393
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-31
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-26
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-23
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-13
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	3e-07
smart00320	40	smart00320, WD40, WD40 repeats	5e-05
smart00356	27	smart00356, ZnF_C3H1, zinc finger	7e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  119 bits (300), Expect = 5e-31
 Identities = 70/260 (26%), Positives = 118/260 (45%), Gaps = 26/260 (10%)

Query: 142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC--AGVINLGGEVGCM-I 198
           L   L+GH   V+ +        L +GS D T++VWD  +G+       + G        
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 199 SEGPWIFI-GVTNFVKAWNTQTNTDLS-LSGPVGQVYAMAVGND--LLFAGTQDGAILAW 254
           ++G ++        ++ W+ +T   +  L+G    V ++A   D  +L + ++D  I  W
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 255 KFNVTTNCFEPAASLKGHSLAVVSLVVGANK--LYSGSMDNSIRVWNLETLQCIQTLTEH 312
                        +L+GH+  V S+    +   + S S D +I++W+L T +C+ TLT H
Sbjct: 121 DVETGKCLT----TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH 176

Query: 313 TSVVMSLLCWD---QFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSE 368
           T  V S + +    + LLS S D TIK+W    +G    T   H    GV ++   PD  
Sbjct: 177 TGEVNS-VAFSPDGEKLLSSSSDGTIKLW-DLSTGKCLGTLRGHEN--GVNSVAFSPDGY 232

Query: 369 GKPVLLCSCN-DNSVRFYDL 387
               LL S + D ++R +DL
Sbjct: 233 ----LLASGSEDGTIRVWDL 248

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  105 bits (264), Expect = 6e-26
 Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 16/216 (7%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN--LG 191
           W +  G + +  L GH   VS +        L S S+D+T++VWD  +G+C   +     
Sbjct: 78  WDLETG-ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD 136

Query: 192 GEVGCMISEGPWIFIGVT--NFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDL--LFAGT 246
                  S         +    +K W+ +T   + +L+G  G+V ++A   D   L + +
Sbjct: 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS 196

Query: 247 QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLY--SGSMDNSIRVWNLETLQ 304
            DG I  W  +      +   +L+GH   V S+    +     SGS D +IRVW+L T +
Sbjct: 197 SDGTIKLWDLS----TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE 252

Query: 305 CIQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVW 338
           C+QTL+ HT+ V SL      + L S S D TI++W
Sbjct: 253 CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 97.0 bits (242), Expect = 8e-23
 Identities = 60/172 (34%), Positives = 85/172 (49%), Gaps = 17/172 (9%)

Query: 225 LSGPVGQVYAMAV--GNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV--VSLV 280
           L G  G V  +A      LL  G+ DG I  W  ++ T   E   +LKGH+  V  V+  
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVW--DLETG--ELLRTLKGHTGPVRDVAAS 60

Query: 281 VGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC--WDQFLLSCSLDKTIKVW 338
                L SGS D +IR+W+LET +C++TLT HTS V S+      + L S S DKTIKVW
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 339 FATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
              ++G    T   H     V ++   PD      +  S  D +++ +DL +
Sbjct: 121 -DVETGKCLTTLRGH--TDWVNSVAFSPD---GTFVASSSQDGTIKLWDLRT 166

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 94.0 bits (232), Expect = 6e-21
 Identities = 72/277 (25%), Positives = 121/277 (43%), Gaps = 25/277 (9%)

Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGV 187
             +  W +    KL+  LEGH + V+ +   P G       S D T+++WD  +G+    
Sbjct: 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST 193

Query: 188 INL-GGEVGCM--ISEGPWIFIGVT--NFVKAWNTQTN--TDLSLSG-PVGQVYAMAVGN 239
           +      V  +    +G  +    +    ++ W+  T      +LSG     V + +   
Sbjct: 194 LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDG 253

Query: 240 DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRV 297
            LL +G+ DG I  W    +++      +L GHS +V+S+        L SGS D ++R+
Sbjct: 254 SLLASGSSDGTIRLWDLRSSSSLL---RTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRL 310

Query: 298 WNLETLQCIQTLTE--HTSVVMSLLC---WDQFLLSCSLDKTIKVWFATDSGNLEVTYTH 352
           W+LET + + +LT   H   V SL         +   S D TI++W       L+    H
Sbjct: 311 WDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH 370

Query: 353 NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
           +    VL++   PD  G+ V   S  D +VR +DL +
Sbjct: 371 SN---VLSVSFSPD--GRVVSSGS-TDGTVRLWDLST 401

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 85.5 bits (210), Expect = 4e-18
 Identities = 71/265 (26%), Positives = 122/265 (46%), Gaps = 20/265 (7%)

Query: 141 KLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVI---NLGGEVGC 196
           K L+ L GH   VS +   P G   + SGS D T+R+WD ++G+        +    V  
Sbjct: 189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS 248

Query: 197 MISEGPWIF-IGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAI 251
              +G  +        ++ W+ ++++ L  +LSG    V ++A   D  LL +G+ DG +
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308

Query: 252 LAWKFNVTTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCIQT 308
             W  ++ T     + +LKGH   V SL     G+  +  GS D +IR+W+L T + ++T
Sbjct: 309 RLW--DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366

Query: 309 LTEHTSVVMSLLCWDQFLLS-CSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDS 367
           L  H++V+      D  ++S  S D T+++W  +    L     H      L       S
Sbjct: 367 LEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDF-----S 421

Query: 368 EGKPVLLCSCNDNSVRFYDLPSVII 392
                L    +DN++R +DL + + 
Sbjct: 422 PDGKSLASGSSDNTIRLWDLKTSLK 446

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 74.7 bits (182), Expect = 2e-14
 Identities = 66/222 (29%), Positives = 95/222 (42%), Gaps = 19/222 (8%)

Query: 131 LHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190
           +  W +  G  L + L GH   V     P GS  L SGS D T+R+WD  S         
Sbjct: 223 IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLLRTLS 281

Query: 191 G--GEVGCMI---SEGPWIFIGVTNFVKAWNTQTNTD---LSLSGPVGQVYAMAV---GN 239
           G    V  +                 V+ W+ +T      L+L G  G V +++    G+
Sbjct: 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGS 341

Query: 240 DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA-VVSLVVGANKLYSGSMDNSIRVW 298
            L+  G+ DG I  W         +P  +L+GHS    VS       + SGS D ++R+W
Sbjct: 342 LLVSGGSDDGTIRLWD----LRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLW 397

Query: 299 NLETLQCIQTLTEHTSVVMSLL--CWDQFLLSCSLDKTIKVW 338
           +L T   ++ L  HTS V SL      + L S S D TI++W
Sbjct: 398 DLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 74.4 bits (181), Expect = 2e-14
 Identities = 66/314 (21%), Positives = 116/314 (36%), Gaps = 51/314 (16%)

Query: 83  NNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKL 142
           +N +  S N      K+    +   +    L  +      +       +    +      
Sbjct: 3   DNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLL-- 60

Query: 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGP 202
              L GH+  ++ I      + L SGS D T+++WD  +G+   + +L G     +S   
Sbjct: 61  ---LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVS--- 113

Query: 203 WIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNC 262
                               L+LS P G    +A  +        DG +  W     +  
Sbjct: 114 -------------------KLALSSPDGNSILLASSSL-------DGTVKLWDL---STP 144

Query: 263 FEPAASLKGHSLAVVSLVVGANKLY---SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSL 319
            +   +L+GHS +V SL    +        S+D +I++W+L T + + TL  HT  V SL
Sbjct: 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL 204

Query: 320 L---CWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH-GVLALCGMPDSEGKPVLLC 375
                    + S S D TI++W   D    ++  +    H   +     PD     +L  
Sbjct: 205 AFSPDGGLLIASGSSDGTIRLW---DLSTGKLLRSTLSGHSDSVVSSFSPDGS---LLAS 258

Query: 376 SCNDNSVRFYDLPS 389
             +D ++R +DL S
Sbjct: 259 GSSDGTIRLWDLRS 272

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 70.5 bits (171), Expect = 3e-13
 Identities = 48/189 (25%), Positives = 76/189 (40%), Gaps = 15/189 (7%)

Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
             +  W +     LL  L GH   V  +        L SGS D TVR+WD  +G+    +
Sbjct: 263 GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322

Query: 189 NL---GGEVGCMI--SEGPWIFIGVT--NFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDL 241
            L    G V  +    +G  +  G +    ++ W+ +T   L        V +++   D 
Sbjct: 323 TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDG 382

Query: 242 LFAGT--QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK--LYSGSMDNSIRV 297
               +   DG +  W      +      +L GH+  V SL    +   L SGS DN+IR+
Sbjct: 383 RVVSSGSTDGTVRLWD----LSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRL 438

Query: 298 WNLETLQCI 306
           W+L+T    
Sbjct: 439 WDLKTSLKS 447

Length = 466

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 10/124 (8%)

Query: 223 LSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKF---NVTTNCFEPAASLKGHS--LAVV 277
           L   GP+  V         LF  ++DG I+ W      +T N  +P   L+GH+  + +V
Sbjct: 72  LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIV 131

Query: 278 SLVVGA-NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD---QFLLSCSLDK 333
           S    A N L S   D  + VW++E  + ++ +  H+  + SL  W+     L + S DK
Sbjct: 132 SFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE-WNLDGSLLCTTSKDK 190

Query: 334 TIKV 337
            + +
Sbjct: 191 KLNI 194

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)

Query: 302 TLQCIQTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVW 338
           + + ++TL  HT  V S+  +    ++L S S D TIK+W
Sbjct: 1   SGELLKTLKGHTGPVTSV-AFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 39.1 bits (92), Expect = 7e-05
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 113 LCRNWVQGNCMYGEKCKFLHS 133
           LC+ + +G C  G++CKF H 
Sbjct: 6   LCKFFKRGYCPRGDRCKFAHP 26

Length = 27

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)

Query: 304 QCIQTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVW 338
           + ++TL  HT  V S+  +      L S S D T++VW
Sbjct: 2   KLLRTLKGHTGPVTSV-AFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178
            +LL  L+GH   V+ +        L SGS D T+++WD
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 18/39 (46%), Positives = 22/39 (56%)

Query: 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178
            KLL  L+GH   V+ +      + L SGS D TVRVWD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 41.2 bits (95), Expect = 8e-04
 Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 6/110 (5%)

Query: 286 LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC--WDQFLLSCSLDKTIKVWFATDS 343
           L +   D+ + + +L +      L  H   + S+      + LLS S D TIK+W   + 
Sbjct: 42  LLALLSDSLVSLPDLSS----LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNG 97

Query: 344 GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVIIC 393
             L  +     +  V  L          +L  S  D +V+ +DL +    
Sbjct: 98  EKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL 147

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 40.1 bits (93), Expect = 0.002
 Identities = 51/218 (23%), Positives = 86/218 (39%), Gaps = 23/218 (10%)

Query: 94  AGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVV 153
           A  SK S I   + IK+ +   N+ +G          +  W V    +L+T+++ H+K V
Sbjct: 530 ASRSKLSGICWNSYIKSQVASSNF-EG---------VVQVWDVARS-QLVTEMKEHEKRV 578

Query: 154 SGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGVINLGGEVGCM---ISEGPWIFIGVT 209
             I   S    L  SGS D +V++W    G   G I     + C+      G  +  G  
Sbjct: 579 WSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSA 638

Query: 210 NFVKAWNTQTNTDLSLSGPVGQ----VYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFE- 264
           +    +    N  L L   +G      Y   V +  L + + D  +  W  +++ +    
Sbjct: 639 DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINE 698

Query: 265 -PAASLKGHS--LAVVSLVVGANKLYSGSMDNSIRVWN 299
            P  S  GH+     V L V    + +GS  N + V++
Sbjct: 699 TPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	393
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.98
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.96
PTZ00420	568	coronin; Provisional	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.94
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.93
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.93
PTZ00421	493	coronin; Provisional	99.93
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.92
PTZ00420	568	coronin; Provisional	99.92
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.92
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.92
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.92
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG1539	910	consensus WD repeat protein [General function pred	99.91
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.91
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.91
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.91
KOG2048	691	consensus WD40 repeat protein [General function pr	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.9
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.89
KOG0289	506	consensus mRNA splicing factor [General function p	99.89
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.89
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.89
KOG0643	327	consensus Translation initiation factor 3, subunit	99.89
KOG0646	476	consensus WD40 repeat protein [General function pr	99.88
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.88
KOG1273	405	consensus WD40 repeat protein [General function pr	99.88
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.88
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.88
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.88
KOG2055	514	consensus WD40 repeat protein [General function pr	99.88
KOG0641	350	consensus WD40 repeat protein [General function pr	99.88
KOG1539	910	consensus WD repeat protein [General function pred	99.88
KOG1274	933	consensus WD40 repeat protein [General function pr	99.87
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.87
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG0639	705	consensus Transducin-like enhancer of split protei	99.87
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.86
KOG0267	825	consensus Microtubule severing protein katanin p80	99.85
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.85
KOG1188	376	consensus WD40 repeat protein [General function pr	99.85
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.85
KOG2048	691	consensus WD40 repeat protein [General function pr	99.85
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.85
KOG0267	825	consensus Microtubule severing protein katanin p80	99.85
KOG2096	420	consensus WD40 repeat protein [General function pr	99.84
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.84
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.84
KOG1274	933	consensus WD40 repeat protein [General function pr	99.84
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.83
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.83
KOG0639	705	consensus Transducin-like enhancer of split protei	99.83
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.83
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.82
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.82
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.82
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.81
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.81
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.81
KOG4328	498	consensus WD40 protein [Function unknown]	99.8
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.8
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.8
KOG2096	420	consensus WD40 repeat protein [General function pr	99.79
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.79
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.78
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.78
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.78
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.78
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.77
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.77
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.76
KOG1273	405	consensus WD40 repeat protein [General function pr	99.76
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.76
KOG0649	325	consensus WD40 repeat protein [General function pr	99.75
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.75
KOG2055	514	consensus WD40 repeat protein [General function pr	99.75
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.74
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.74
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.73
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.73
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.72
COG2319	466	FOG: WD40 repeat [General function prediction only	99.72
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.72
COG2319	466	FOG: WD40 repeat [General function prediction only	99.71
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.7
KOG4227	609	consensus WD40 repeat protein [General function pr	99.69
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.68
PRK11028	330	6-phosphogluconolactonase; Provisional	99.67
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.66
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.66
KOG0649	325	consensus WD40 repeat protein [General function pr	99.66
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.65
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.65
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.65
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.64
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.64
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.64
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.63
KOG1963	792	consensus WD40 repeat protein [General function pr	99.63
KOG1188	376	consensus WD40 repeat protein [General function pr	99.63
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.61
KOG1963	792	consensus WD40 repeat protein [General function pr	99.61
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.6
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.6
KOG1310	758	consensus WD40 repeat protein [General function pr	99.59
PRK01742	429	tolB translocation protein TolB; Provisional	99.58
KOG4227	609	consensus WD40 repeat protein [General function pr	99.58
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.58
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.56
KOG1334	559	consensus WD40 repeat protein [General function pr	99.54
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.54
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.54
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.54
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.53
KOG1334	559	consensus WD40 repeat protein [General function pr	99.53
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.53
KOG2321	703	consensus WD40 repeat protein [General function pr	99.53
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.52
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.5
PRK11028	330	6-phosphogluconolactonase; Provisional	99.48
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.48
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.47
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.47
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.46
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.45
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.44
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.41
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.4
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.4
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.4
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.39
PRK03629	429	tolB translocation protein TolB; Provisional	99.31
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.29
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.29
KOG1310	758	consensus WD40 repeat protein [General function pr	99.28
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.27
KOG4547	541	consensus WD40 repeat-containing protein [General	99.26
PRK04922	433	tolB translocation protein TolB; Provisional	99.25
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.25
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.23
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.22
PRK01742	429	tolB translocation protein TolB; Provisional	99.22
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.22
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.22
PRK02889	427	tolB translocation protein TolB; Provisional	99.2
KOG2321	703	consensus WD40 repeat protein [General function pr	99.19
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.18
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.18
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.14
PRK03629	429	tolB translocation protein TolB; Provisional	99.14
KOG2139	445	consensus WD40 repeat protein [General function pr	99.11
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.11
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.09
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.09
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.09
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.06
PRK05137	435	tolB translocation protein TolB; Provisional	99.06
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.05
KOG2139	445	consensus WD40 repeat protein [General function pr	99.03
PRK04922	433	tolB translocation protein TolB; Provisional	99.02
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.01
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.01
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.0
KOG2315	566	consensus Predicted translation initiation factor	98.98
PRK00178	430	tolB translocation protein TolB; Provisional	98.98
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.98
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.98
PRK05137	435	tolB translocation protein TolB; Provisional	98.96
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.96
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.94
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.94
PRK04792	448	tolB translocation protein TolB; Provisional	98.93
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.92
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.91
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.89
KOG2695	425	consensus WD40 repeat protein [General function pr	98.88
PRK02889	427	tolB translocation protein TolB; Provisional	98.87
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.87
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.86
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.84
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.83
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.82
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.81
KOG4547	541	consensus WD40 repeat-containing protein [General	98.8
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.79
KOG2315	566	consensus Predicted translation initiation factor	98.74
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.73
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.7
PRK00178	430	tolB translocation protein TolB; Provisional	98.67
PRK04792	448	tolB translocation protein TolB; Provisional	98.65
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.64
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.64
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.63
KOG2695	425	consensus WD40 repeat protein [General function pr	98.62
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.59
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.59
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.59
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.57
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.54
PRK01029	428	tolB translocation protein TolB; Provisional	98.52
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.52
COG4946	668	Uncharacterized protein related to the periplasmic	98.5
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.5
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.48
KOG2314	698	consensus Translation initiation factor 3, subunit	98.47
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.43
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.43
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.42
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.39
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.38
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.34
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.34
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.29
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.27
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.26
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.24
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.24
PRK01029	428	tolB translocation protein TolB; Provisional	98.23
PRK04043	419	tolB translocation protein TolB; Provisional	98.23
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.22
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.18
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.15
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.11
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.1
COG4946	668	Uncharacterized protein related to the periplasmic	98.08
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.07
PRK04043	419	tolB translocation protein TolB; Provisional	98.05
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.03
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.02
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.98
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.98
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.95
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.94
KOG3621	726	consensus WD40 repeat-containing protein [General	97.94
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.9
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.85
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.84
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.8
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.77
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.7
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.64
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.63
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.62
KOG2314	698	consensus Translation initiation factor 3, subunit	97.61
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.59
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.59
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.58
PHA02713	557	hypothetical protein; Provisional	97.57
KOG3621	726	consensus WD40 repeat-containing protein [General	97.53
PHA02713	557	hypothetical protein; Provisional	97.5
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.48
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.37
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.35
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.34
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.3
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.26
KOG2444	238	consensus WD40 repeat protein [General function pr	97.16
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.16
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.12
PRK02888	635	nitrous-oxide reductase; Validated	97.09
KOG2444	238	consensus WD40 repeat protein [General function pr	97.08
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.08
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.08
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.0
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.98
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.96
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.94
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.86
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.83
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.79
PRK02888	635	nitrous-oxide reductase; Validated	96.75
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.75
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.7
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.59
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.58
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.55
COG5276	370	Uncharacterized conserved protein [Function unknow	96.54
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.48
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.48
COG5276	370	Uncharacterized conserved protein [Function unknow	96.47
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.38
PHA02790	480	Kelch-like protein; Provisional	96.18
COG1520	370	FOG: WD40-like repeat [Function unknown]	96.13
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.96
PHA03098	534	kelch-like protein; Provisional	95.92
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.83
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.81
PHA03098	534	kelch-like protein; Provisional	95.78
KOG2395	644	consensus Protein involved in vacuole import and d	95.78
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.75
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.71
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.71
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	95.67
PHA02790	480	Kelch-like protein; Provisional	95.65
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.62
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.51
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.46
PRK13616	591	lipoprotein LpqB; Provisional	95.28
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.17
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.12
COG3391	381	Uncharacterized conserved protein [Function unknow	95.11
smart00356	27	ZnF_C3H1 zinc finger.	94.9
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	94.71
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.65
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.61
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.56
COG3391	381	Uncharacterized conserved protein [Function unknow	94.56
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	94.49
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.44
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.13
PRK13616	591	lipoprotein LpqB; Provisional	93.57
KOG2395	644	consensus Protein involved in vacuole import and d	93.51
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.37
PLN02153	341	epithiospecifier protein	92.92
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.71
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.06
COG1520	370	FOG: WD40-like repeat [Function unknown]	92.04
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	91.29
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.2
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	91.11
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	90.99
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.96
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.23
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	90.21
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	90.14
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	90.1
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	90.07
PF14727	418	PHTB1_N: PTHB1 N-terminus	90.0
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.93
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.52
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	89.45
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	89.33
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	89.09
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	89.01
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	88.87
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	88.63
KOG2377	657	consensus Uncharacterized conserved protein [Funct	88.53
PLN02193	470	nitrile-specifier protein	87.84
COG5167	776	VID27 Protein involved in vacuole import and degra	87.36
PLN02153	341	epithiospecifier protein	87.31
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	86.64
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	86.29
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	86.27
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	86.25
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	86.25
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	86.06
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	85.87
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	85.75
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	85.68
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	85.53
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	84.52
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	84.49
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	84.2
PF14727	418	PHTB1_N: PTHB1 N-terminus	83.7
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	83.4
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	83.23
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	83.22
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	83.08
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	83.03
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	82.94
PRK10115	686	protease 2; Provisional	82.65
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	82.59
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	82.31
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	82.06
PF12768	281	Rax2: Cortical protein marker for cell polarity	81.95
KOG2714	465	consensus SETA binding protein SB1 and related pro	81.7
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	81.12
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	81.06
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	81.06
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	80.48

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-42  Score=297.79  Aligned_cols=279  Identities=24%  Similarity=0.372  Sum_probs=244.2

Q ss_pred             ccceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 016224          104 NRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (393)
Q Consensus       104 ~~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~  181 (393)
                      ....|..+|.|++|+++  .+++|+.|.++++||..+. .++++.++|...|.|++|+||++.||+|+.||+|++||..+
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te-Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt  188 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE-TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT  188 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC-CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence            35568889999999987  5778999999999999998 89999999999999999999999999999999999999999


Q ss_pred             CeEEE-EEecCC-ceEEEE-------eCCCEEEE-EcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC-EEEEEeCCC
Q 016224          182 GQCAG-VINLGG-EVGCMI-------SEGPWIFI-GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDG  249 (393)
Q Consensus       182 ~~~~~-~~~~~~-~~~~~~-------~~~~~l~~-~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~-~l~~~~~dg  249 (393)
                      |+++. .+..+. .+.++.       +..+.+++ +.||.++|||+..+..+ .+.+|..+|+|+.|..+ ++++|+.|+
T Consensus       189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~Dr  268 (480)
T KOG0271|consen  189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDR  268 (480)
T ss_pred             CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCc
Confidence            87654 344333 343332       35556665 48999999999998877 88999999999999966 999999999


Q ss_pred             cEEEEEeccCCccccCceeecCceeeEEEEEEc-------------CC-------------------------EEEEecC
Q 016224          250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG-------------AN-------------------------KLYSGSM  291 (393)
Q Consensus       250 ~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-------------~~-------------------------~l~sg~~  291 (393)
                      +|++|+...+    .+...+++|...|..++.+             ++                         +|++|+.
T Consensus       269 tIkvw~a~dG----~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD  344 (480)
T KOG0271|consen  269 TIKVWRALDG----KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD  344 (480)
T ss_pred             eEEEEEccch----hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence            9999998886    6778889999999888765             22                         4999999


Q ss_pred             CCcEEEeeCCC-cceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCC
Q 016224          292 DNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE  368 (393)
Q Consensus       292 dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  368 (393)
                      |.++.+|+... .+++..+.+|...|+.+.|+  +.+++++|.|..|++||.++++.+..+.+|-..  |..++|+.|+.
T Consensus       345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~--VYqvawsaDsR  422 (480)
T KOG0271|consen  345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAA--VYQVAWSADSR  422 (480)
T ss_pred             CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccce--eEEEEeccCcc
Confidence            99999999764 56899999999999999999  569999999999999999999999999888765  99999998877


Q ss_pred             CCcEEEEEeCCCeEEEEeCCceee
Q 016224          369 GKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       369 ~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                         +|++++.|.++++|++++.+|
T Consensus       423 ---LlVS~SkDsTLKvw~V~tkKl  443 (480)
T KOG0271|consen  423 ---LLVSGSKDSTLKVWDVRTKKL  443 (480)
T ss_pred             ---EEEEcCCCceEEEEEeeeeee
Confidence               999999999999999998876

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.1e-42  Score=293.70  Aligned_cols=292  Identities=23%  Similarity=0.359  Sum_probs=255.3

Q ss_pred             CCCcccCCCCCCCcccccceeecceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEE
Q 016224           88 HSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYS  167 (393)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s  167 (393)
                      -++||+.++....++++.......|+|+++.++.+++|..|++|+|||..+- .+++.+.||++.|.|+.|.  .+.|++
T Consensus       176 idsNWr~Gr~~~~rinc~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n~~-~c~~~L~GHtGSVLCLqyd--~rviis  252 (499)
T KOG0281|consen  176 IESNWRCGRHLLQRINCRSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSL-ECLKILTGHTGSVLCLQYD--ERVIVS  252 (499)
T ss_pred             hhcchhccceeeeeecCCcccCCceEEEEecchhhhcccccCceEEeccccH-HHHHhhhcCCCcEEeeecc--ceEEEe
Confidence            3589999999999999999999999999999999999999999999999887 8899999999999999985  569999


Q ss_pred             EeCCCcEEEEECCCCeEEEEEecCCc-eEEE-EeCCCEEEEEcCCeEEEEECCCCcee----eecCCCCcEEEEEEeCCE
Q 016224          168 GSKDETVRVWDCASGQCAGVINLGGE-VGCM-ISEGPWIFIGVTNFVKAWNTQTNTDL----SLSGPVGQVYAMAVGNDL  241 (393)
Q Consensus       168 ~s~dg~v~iwd~~~~~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~i~v~d~~~~~~~----~~~~~~~~v~~l~~~~~~  241 (393)
                      |+.|.+|+|||+++++++.++-++.+ +..+ ++++-++.++.|.++.+||+.....+    .+.+|...|+.+.|+..+
T Consensus       253 GSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~ky  332 (499)
T KOG0281|consen  253 GSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY  332 (499)
T ss_pred             cCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccce
Confidence            99999999999999999998876643 4333 45666666779999999999887654    678999999999999999


Q ss_pred             EEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEE
Q 016224          242 LFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC  321 (393)
Q Consensus       242 l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~  321 (393)
                      +++++.|.+|++|++.+.    +.+..+.+|...|.|+.+.+.++++|+.|.+|++||++.|.+++.+++|+.-|.++.|
T Consensus       333 IVsASgDRTikvW~~st~----efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF  408 (499)
T KOG0281|consen  333 IVSASGDRTIKVWSTSTC----EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF  408 (499)
T ss_pred             EEEecCCceEEEEeccce----eeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee
Confidence            999999999999999987    7789999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCEEEEEeCCCcEEEEEcCCCcceEEEE-------eecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          322 WDQFLLSCSLDKTIKVWFATDSGNLEVTY-------THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       322 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      +.+.+++|+.||+|+|||+..........       ...+...|..+.|-     ...|++++.|.+|-|||.-.+.
T Consensus       409 d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD-----~fqIvsssHddtILiWdFl~~~  480 (499)
T KOG0281|consen  409 DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD-----EFQIISSSHDDTILIWDFLNGP  480 (499)
T ss_pred             cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec-----ceEEEeccCCCeEEEEEcCCCC
Confidence            99999999999999999997655432111       11223357777663     3378999999999999987664

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.2e-40  Score=285.07  Aligned_cols=269  Identities=23%  Similarity=0.357  Sum_probs=244.0

Q ss_pred             eecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCC--CCEEEEEeCCCcEEEEECCCCe
Q 016224          108 IKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG--SDKLYSGSKDETVRVWDCASGQ  183 (393)
Q Consensus       108 ~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~--~~~l~s~s~dg~v~iwd~~~~~  183 (393)
                      ...||..+.|+.+  .+++|+-+|.++||+..+. ..+.+|.+|.+.|.++.|+|.  +..||||+.||+|++|++++..
T Consensus       174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~  252 (459)
T KOG0272|consen  174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET  252 (459)
T ss_pred             CCCcceeeEeecCCCeEEEeecCCceeEeecCCc-ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence            3458888888865  5778999999999999998 899999999999999999996  5689999999999999999988


Q ss_pred             EEEEEecCCc-e--EEEEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEe
Q 016224          184 CAGVINLGGE-V--GCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF  256 (393)
Q Consensus       184 ~~~~~~~~~~-~--~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~  256 (393)
                      .+..+..+.. +  ..+.++|++|.++ .|.+-++||+.++..+ ...+|...|.+++|.++  ++++|+.|..-+|||+
T Consensus       253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl  332 (459)
T KOG0272|consen  253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL  332 (459)
T ss_pred             chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeec
Confidence            8888876543 2  3455899999976 8999999999999887 78899999999999998  9999999999999999


Q ss_pred             ccCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc---CCEEEEEeC
Q 016224          257 NVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSL  331 (393)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~  331 (393)
                      +++    ..+..+.+|...|.+++|+++  .||||+.|++++|||++..+.+.++.+|...|+.+.|+   |.+|+|++.
T Consensus       333 Rtg----r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy  408 (459)
T KOG0272|consen  333 RTG----RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY  408 (459)
T ss_pred             ccC----cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence            998    678889999999999999865  79999999999999999999999999999999999998   679999999


Q ss_pred             CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          332 DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       332 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                      |++++||..++..++..+.+|...  |.++..++++.   +|+|++.|.++++|.
T Consensus       409 D~t~kiWs~~~~~~~ksLaGHe~k--V~s~Dis~d~~---~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  409 DNTVKIWSTRTWSPLKSLAGHEGK--VISLDISPDSQ---AIATSSFDRTIKLWR  458 (459)
T ss_pred             CcceeeecCCCcccchhhcCCccc--eEEEEeccCCc---eEEEeccCceeeecc
Confidence            999999999999999999888766  99999988877   999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.3e-39  Score=277.32  Aligned_cols=276  Identities=24%  Similarity=0.387  Sum_probs=242.5

Q ss_pred             cccceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecC-----CCCEEEEEeCCCcEE
Q 016224          103 NNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-----GSDKLYSGSKDETVR  175 (393)
Q Consensus       103 ~~~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~-----~~~~l~s~s~dg~v~  175 (393)
                      .....|+.-|.|++|+||+  +++|+.||.|++||.+++.+..+.|.+|+..|++++|.|     ..++||+++.||.|+
T Consensus       151 ~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vr  230 (480)
T KOG0271|consen  151 FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVR  230 (480)
T ss_pred             eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEE
Confidence            3455688899999999985  568999999999999999888899999999999999954     668999999999999


Q ss_pred             EEECCCCeEEEEEecCC-ceEEEEeC-CCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeC------------
Q 016224          176 VWDCASGQCAGVINLGG-EVGCMISE-GPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGN------------  239 (393)
Q Consensus       176 iwd~~~~~~~~~~~~~~-~~~~~~~~-~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~------------  239 (393)
                      |||+..++++..+..+. ++.|+... ..++++| .|++|++|+...+... .+.+|...|+.|+.+.            
T Consensus       231 IWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t  310 (480)
T KOG0271|consen  231 IWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHT  310 (480)
T ss_pred             EEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccc
Confidence            99999999999888764 56666654 4566665 8899999999998877 8899999999998871            


Q ss_pred             -C-------------------------EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC--CEEEEecC
Q 016224          240 -D-------------------------LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSM  291 (393)
Q Consensus       240 -~-------------------------~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~  291 (393)
                       +                         .|++|+.|.++.+|+.....   +++..+.+|...|..+.|++  .++|+++.
T Consensus       311 ~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k---kpi~rmtgHq~lVn~V~fSPd~r~IASaSF  387 (480)
T KOG0271|consen  311 GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK---KPITRMTGHQALVNHVSFSPDGRYIASASF  387 (480)
T ss_pred             cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc---cchhhhhchhhheeeEEECCCccEEEEeec
Confidence             1                         39999999999999977654   67888899999999998875  58999999


Q ss_pred             CCcEEEeeCCCcceeeEeccCccceEEEEEcC--CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCC
Q 016224          292 DNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEG  369 (393)
Q Consensus       292 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  369 (393)
                      |..|++||.++|+.+.+|++|-..|..++|+.  ++|++||.|.++++||+++.+....+.+|..+  |.++.|+|++. 
T Consensus       388 DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DE--Vf~vDwspDG~-  464 (480)
T KOG0271|consen  388 DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADE--VFAVDWSPDGQ-  464 (480)
T ss_pred             ccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCce--EEEEEecCCCc-
Confidence            99999999999999999999999999999994  59999999999999999988777777777766  99999999877 


Q ss_pred             CcEEEEEeCCCeEEEEe
Q 016224          370 KPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       370 ~~~l~s~s~dg~I~iwd  386 (393)
                        .+++|+.|..+++|.
T Consensus       465 --rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  465 --RVASGGKDKVLRLWR  479 (480)
T ss_pred             --eeecCCCceEEEeec
Confidence              899999999999995

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=4.8e-37  Score=291.52  Aligned_cols=276  Identities=38%  Similarity=0.625  Sum_probs=246.4

Q ss_pred             eeecceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224          107 VIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG  186 (393)
Q Consensus       107 ~~~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  186 (393)
                      .+...++|.+|..+.+++++.|.+|++||..+++.+...+.+|.+.|.+++|...+.+|++|+.|.++++||+.+|+|..
T Consensus       206 ~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~  285 (537)
T KOG0274|consen  206 TDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH  285 (537)
T ss_pred             cCcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE
Confidence            45668999999999999999999999999999955555599999999999998888999999999999999999999999


Q ss_pred             EEecCCceEEEEeCCCEEEEE--cCCeEEEEECCCCceeeec-CCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccc
Q 016224          187 VINLGGEVGCMISEGPWIFIG--VTNFVKAWNTQTNTDLSLS-GPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCF  263 (393)
Q Consensus       187 ~~~~~~~~~~~~~~~~~l~~~--~~~~i~v~d~~~~~~~~~~-~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~  263 (393)
                      .+..+............+.++  .|.+|++|++.++..+.+. +|..+|.++..+.+++++|+.|++|++||+.+.    
T Consensus       286 ~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~----  361 (537)
T KOG0274|consen  286 SLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTG----  361 (537)
T ss_pred             EecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhc----
Confidence            999877766666555555444  8999999999999988554 499999999999999999999999999999966    


Q ss_pred             cCceeecCceeeEEEEEEcC-CEEEEecCCCcEEEeeCCCc-ceeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcC
Q 016224          264 EPAASLKGHSLAVVSLVVGA-NKLYSGSMDNSIRVWNLETL-QCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFAT  341 (393)
Q Consensus       264 ~~~~~~~~~~~~v~~l~~~~-~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~  341 (393)
                      +++..+.+|...|.++.+++ +++++|+.|++|++||+++. +++.++.+|...+..+.+.+++|++++.|++|++||..
T Consensus       362 ~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~  441 (537)
T KOG0274|consen  362 KCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAE  441 (537)
T ss_pred             eeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecc
Confidence            88999999999999999999 99999999999999999999 99999999999999999999999999999999999999


Q ss_pred             CCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          342 DSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       342 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      +++.+..+... +...+..+++.     +..+++++.||.+++||++++++
T Consensus       442 ~~~~~~~~~~~-~~~~v~~l~~~-----~~~il~s~~~~~~~l~dl~~~~~  486 (537)
T KOG0274|consen  442 EGECLRTLEGR-HVGGVSALALG-----KEEILCSSDDGSVKLWDLRSGTL  486 (537)
T ss_pred             cCceeeeeccC-CcccEEEeecC-----cceEEEEecCCeeEEEecccCch
Confidence            99998888774 22346666554     23799999999999999999864

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=8.3e-35  Score=242.28  Aligned_cols=270  Identities=15%  Similarity=0.225  Sum_probs=232.3

Q ss_pred             eeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC--
Q 016224          107 VIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG--  182 (393)
Q Consensus       107 ~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~--  182 (393)
                      .|.+.|+|+.|+.+  .+++++.||.+.|||.-+. ..++.+......|..++|+|.++++|.|+.|....||++.+.  
T Consensus        53 GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt-nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~  131 (343)
T KOG0286|consen   53 GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT-NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA  131 (343)
T ss_pred             ccccceeeeEecCCcCeEEeeccCCeEEEEEcccc-cceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccc
Confidence            46679999999987  5788999999999999887 667778888999999999999999999999999999999855  


Q ss_pred             ----eEEEEEecCCce-EE--EEeCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeC-C--EEEEEeCCCcE
Q 016224          183 ----QCAGVINLGGEV-GC--MISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGN-D--LLFAGTQDGAI  251 (393)
Q Consensus       183 ----~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~-~--~l~~~~~dg~I  251 (393)
                          ...+.+..+... .+  +..++.+|..+.|.+..+||+++++.. .+.+|.+.|.++.++| +  .|++|+-|+..
T Consensus       132 ~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~a  211 (343)
T KOG0286|consen  132 EGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSA  211 (343)
T ss_pred             cccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccce
Confidence                233444444433 22  224666666779999999999999988 8899999999999998 3  99999999999


Q ss_pred             EEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEecc--CccceEEEEEc--CCE
Q 016224          252 LAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTE--HTSVVMSLLCW--DQF  325 (393)
Q Consensus       252 ~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~--~~~  325 (393)
                      ++||++.+    ...+.+.+|...|.++.|.  |.-|++|+.|+++++||++..+.+..+..  -...|++++|+  |++
T Consensus       212 klWD~R~~----~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRl  287 (343)
T KOG0286|consen  212 KLWDVRSG----QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRL  287 (343)
T ss_pred             eeeeccCc----ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccE
Confidence            99999998    6789999999999999985  55899999999999999999988888863  34578999998  899


Q ss_pred             EEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          326 LLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       326 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                      |++|..|.++.+||.-.++....+.+|...  |.++..+|++.   .|+||+.|..|+||.
T Consensus       288 Lfagy~d~~c~vWDtlk~e~vg~L~GHeNR--vScl~~s~DG~---av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  288 LFAGYDDFTCNVWDTLKGERVGVLAGHENR--VSCLGVSPDGM---AVATGSWDSTLRIWA  343 (343)
T ss_pred             EEeeecCCceeEeeccccceEEEeeccCCe--eEEEEECCCCc---EEEecchhHheeecC
Confidence            999999999999999888888888877665  77777777766   899999999999994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-34  Score=239.01  Aligned_cols=275  Identities=20%  Similarity=0.293  Sum_probs=230.5

Q ss_pred             ceeecceEEeeEe---cCcEEEecCCCeEEEEECCC-----CcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEE
Q 016224          106 AVIKTDILCRNWV---QGNCMYGEKCKFLHSWTVGD-----GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW  177 (393)
Q Consensus       106 ~~~~~~i~c~~~~---~~~~~~g~~dg~i~vwd~~~-----~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iw  177 (393)
                      ..|...|+.++..   ++.++.++.|.++.+|++..     | .+++.+.||+..|..++.++||++.++++.|+++++|
T Consensus        12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G-~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlW   90 (315)
T KOG0279|consen   12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG-VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLW   90 (315)
T ss_pred             cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC-ceeeeeeccceEecceEEccCCceEEeccccceEEEE
Confidence            3456677777665   45677899999999999863     4 5688999999999999999999999999999999999


Q ss_pred             ECCCCeEEEEEecCCc-eEE--EEeCCCEEEEE-cCCeEEEEECCCCceeeecCC--CCcEEEEEEeCC----EEEEEeC
Q 016224          178 DCASGQCAGVINLGGE-VGC--MISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGP--VGQVYAMAVGND----LLFAGTQ  247 (393)
Q Consensus       178 d~~~~~~~~~~~~~~~-~~~--~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~--~~~v~~l~~~~~----~l~~~~~  247 (393)
                      |+.+++..+.|..+.. +.+  +.++++.+++| .|++|++|++......++..+  .+-|.++.|+|+    +|++++.
T Consensus        91 Dl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~  170 (315)
T KOG0279|consen   91 DLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASW  170 (315)
T ss_pred             EecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccC
Confidence            9999999988887654 333  34677777776 788999999999988866554  789999999997    8999999


Q ss_pred             CCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcC-C
Q 016224          248 DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD-Q  324 (393)
Q Consensus       248 dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~  324 (393)
                      |++|++||+++-    +....+.+|+..++.++++  |.++++|+.||.+.+||++.++.+.++. |...|.+++|++ +
T Consensus       171 DktvKvWnl~~~----~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnr  245 (315)
T KOG0279|consen  171 DKTVKVWNLRNC----QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNR  245 (315)
T ss_pred             CceEEEEccCCc----chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCc
Confidence            999999999986    6678888999999888775  6799999999999999999999988886 778999999995 4


Q ss_pred             EEEEEeCCCcEEEEEcCCCcceEEEEee-------cCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          325 FLLSCSLDKTIKVWFATDSGNLEVTYTH-------NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       325 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      +.+....+..|+|||+.+...+..+...       ......+.++|++++.   .|++|-.|+.|++|.+..
T Consensus       246 ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~---tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  246 YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQ---TLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCc---EEEeeecCCcEEEEEeec
Confidence            6667777788999999887766554321       2245678889988776   899999999999999853

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8.5e-35  Score=256.31  Aligned_cols=268  Identities=20%  Similarity=0.335  Sum_probs=236.4

Q ss_pred             ecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224          109 KTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG  186 (393)
Q Consensus       109 ~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  186 (393)
                      ...|+|++|+.+  .+++|+.||.+++|+...  .++.+|..|+++|.+|.|+..|+||++++.|+++.+||..+++..+
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G--~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q  312 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG--NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ  312 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCc--hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence            359999999955  466899999999999755  5888999999999999999999999999999999999999999999


Q ss_pred             EEecCCce---EEEEeCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCC
Q 016224          187 VINLGGEV---GCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT  260 (393)
Q Consensus       187 ~~~~~~~~---~~~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~  260 (393)
                      .+..+...   ..+..+..+..++.|+.|+++.+...... ++.+|.++|.+|.|+|.  +|++++.|++++||..... 
T Consensus       313 ~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-  391 (524)
T KOG0273|consen  313 QFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-  391 (524)
T ss_pred             eeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC-
Confidence            88877655   45667788888889999999999888777 88899999999999987  9999999999999998776 


Q ss_pred             ccccCceeecCceeeEEEEEEcC-----------CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEE
Q 016224          261 NCFEPAASLKGHSLAVVSLVVGA-----------NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLL  327 (393)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~l~~~~-----------~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~  327 (393)
                         .....+..|...|..+.|++           ..+++++.|++|++||+..+.++.+|..|..+|.+++|+  +.+++
T Consensus       392 ---~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylA  468 (524)
T KOG0273|consen  392 ---NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLA  468 (524)
T ss_pred             ---cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEE
Confidence               55678889999999998852           369999999999999999999999999999999999999  78999


Q ss_pred             EEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          328 SCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       328 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      +|+.||.|.||+.++++.+.....   ...+..++|+..+.   +|..+-.||.+++-|++
T Consensus       469 sGs~dg~V~iws~~~~~l~~s~~~---~~~Ifel~Wn~~G~---kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  469 SGSLDGCVHIWSTKTGKLVKSYQG---TGGIFELCWNAAGD---KLGACASDGSVCVLDLR  523 (524)
T ss_pred             ecCCCCeeEeccccchheeEeecC---CCeEEEEEEcCCCC---EEEEEecCCCceEEEec
Confidence            999999999999988776555443   34589999988765   78888889999999875

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-34  Score=246.57  Aligned_cols=273  Identities=21%  Similarity=0.335  Sum_probs=236.1

Q ss_pred             cceeecceEEeeEecCcEE--EecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC-
Q 016224          105 RAVIKTDILCRNWVQGNCM--YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-  181 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~~~--~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~-  181 (393)
                      .+.+..+|+.+-|.+...+  +++.|++|++||..++ ++.+.|++|.+.|.+|+|+..|++|++++.|-.+++||.++ 
T Consensus       104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg-~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~  182 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG-ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF  182 (406)
T ss_pred             hhccccceeeeeeccCceEEEEecCCceEEEEEccch-hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH
Confidence            3457779999999988544  5778999999999999 88999999999999999999999999999999999999987 


Q ss_pred             CeEEEEEecCCce---EEEEeCCCEEEE-EcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEE
Q 016224          182 GQCAGVINLGGEV---GCMISEGPWIFI-GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAW  254 (393)
Q Consensus       182 ~~~~~~~~~~~~~---~~~~~~~~~l~~-~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vw  254 (393)
                      .++++....+...   ..+.+.+.++++ +.|.+|+.|++.++..+ ++.+|...|..++.+.|  ++++++.|.+|++|
T Consensus       183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW  262 (406)
T KOG0295|consen  183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVW  262 (406)
T ss_pred             HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence            4555555544432   334566777765 58999999999999988 88999999999999998  89999999999999


Q ss_pred             EeccCCccccCceeecCceeeEEEEEEc------------C-----CEEEEecCCCcEEEeeCCCcceeeEeccCccceE
Q 016224          255 KFNVTTNCFEPAASLKGHSLAVVSLVVG------------A-----NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVM  317 (393)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~~~v~~l~~~------------~-----~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~  317 (393)
                      -+.+.    +....+..|.-+|-+++|-            +     .++.+++.|++|++||+.++.++.++.+|...|.
T Consensus       263 ~~~t~----~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr  338 (406)
T KOG0295|consen  263 VVATK----QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR  338 (406)
T ss_pred             Eeccc----hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence            99887    5556677788888777762            2     3799999999999999999999999999999999


Q ss_pred             EEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          318 SLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       318 ~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      .++|+  |+||+++..|+++++||+++.+++..+..|.+-  +.++.|..+.+   +++||+-|.++++|+-
T Consensus       339 ~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf--vt~lDfh~~~p---~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  339 GVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF--VTSLDFHKTAP---YVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcce--eEEEecCCCCc---eEEeccccceeeeeec
Confidence            99999  899999999999999999999998888866655  88888877766   9999999999999974

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.6e-35  Score=253.84  Aligned_cols=248  Identities=20%  Similarity=0.309  Sum_probs=214.4

Q ss_pred             CCCCCCcccCCCCCCCcccccceeecceEEeeEecC----cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecC
Q 016224           85 FNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG----NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS  160 (393)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~c~~~~~~----~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~  160 (393)
                      ++..-..|....-  ........|...+.++.|.|.    .+++++.||++++|++.+. .++..|.+|...|..++|+|
T Consensus       195 wsG~~kvW~~~~~--~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e-~~l~~l~gH~~RVs~VafHP  271 (459)
T KOG0272|consen  195 WSGLVKVWSVPQC--NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE-TPLQDLEGHLARVSRVAFHP  271 (459)
T ss_pred             cCCceeEeecCCc--ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC-cchhhhhcchhhheeeeecC
Confidence            3333455655433  222334457889999999976    5778999999999999988 89999999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-ceE--EEEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEE
Q 016224          161 GSDKLYSGSKDETVRVWDCASGQCAGVINLGG-EVG--CMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAM  235 (393)
Q Consensus       161 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~~--~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l  235 (393)
                      +|++|+|++.|.+-++||+++++.+.....+. .+.  .+.++|.++++| .|..-+|||+++++.+ .+.+|..+|.++
T Consensus       272 sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V  351 (459)
T KOG0272|consen  272 SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSV  351 (459)
T ss_pred             CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeE
Confidence            99999999999999999999987766555443 333  334689998886 8889999999999987 889999999999


Q ss_pred             EEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CCEEEEecCCCcEEEeeCCCcceeeEec
Q 016224          236 AVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQCIQTLT  310 (393)
Q Consensus       236 ~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~  310 (393)
                      .|+|+  .|++|+.|++++|||++..    ..+..+.+|..-|..+.++   |.+|+|++.|++++||..+++++++++.
T Consensus       352 ~fsPNGy~lATgs~Dnt~kVWDLR~r----~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa  427 (459)
T KOG0272|consen  352 AFSPNGYHLATGSSDNTCKVWDLRMR----SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA  427 (459)
T ss_pred             eECCCceEEeecCCCCcEEEeeeccc----ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc
Confidence            99999  8999999999999999987    5578889999999999987   4589999999999999999999999999


Q ss_pred             cCccceEEEEEc--CCEEEEEeCCCcEEEEE
Q 016224          311 EHTSVVMSLLCW--DQFLLSCSLDKTIKVWF  339 (393)
Q Consensus       311 ~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd  339 (393)
                      +|.+.|.++.++  +++|++++.|.++++|.
T Consensus       428 GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  428 GHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             CCccceEEEEeccCCceEEEeccCceeeecc
Confidence            999999999888  67899999999999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.1e-32  Score=224.82  Aligned_cols=262  Identities=19%  Similarity=0.305  Sum_probs=216.9

Q ss_pred             cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe--EEEEEecC-CceEE-
Q 016224          121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ--CAGVINLG-GEVGC-  196 (393)
Q Consensus       121 ~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~-~~~~~-  196 (393)
                      -+++++.|.+|++|.+.+| .+.++++...+.|..+.+.|+++.||+++.. .|++||++++.  .+.++..+ ..+.. 
T Consensus        12 iLvsA~YDhTIRfWqa~tG-~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFWQALTG-ICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAV   89 (311)
T ss_pred             EEEeccCcceeeeeehhcC-eEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEE
Confidence            4668999999999999999 9999999888999999999999999998875 89999999875  57777766 34433 


Q ss_pred             -EEeCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCc
Q 016224          197 -MISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGH  272 (393)
Q Consensus       197 -~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~  272 (393)
                       +..+++++++| .||+++|||++.........+..+|+++..+|+  .|+++..+|.|++||+.......+++   ...
T Consensus        90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li---Pe~  166 (311)
T KOG0315|consen   90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI---PED  166 (311)
T ss_pred             EEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC---CCC
Confidence             44699999987 788999999999777788888999999999998  99999999999999998864322222   222


Q ss_pred             eeeEEEEE--EcCCEEEEecCCCcEEEeeCCC------cceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCC
Q 016224          273 SLAVVSLV--VGANKLYSGSMDNSIRVWNLET------LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATD  342 (393)
Q Consensus       273 ~~~v~~l~--~~~~~l~sg~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~  342 (393)
                      ...|.++.  +++.+++.+...|..++|++-+      .+++..|+.|...+..+.++  +++|+++|.|.+++||+..+
T Consensus       167 ~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~  246 (311)
T KOG0315|consen  167 DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD  246 (311)
T ss_pred             CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence            34555555  5688999999999999999865      35677888999999998888  67999999999999999987


Q ss_pred             CcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          343 SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       343 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      .-++ .+....+...+...+|+.++.   ||+||+.|+.+++|+++.++
T Consensus       247 ~~kl-e~~l~gh~rWvWdc~FS~dg~---YlvTassd~~~rlW~~~~~k  291 (311)
T KOG0315|consen  247 FFKL-ELVLTGHQRWVWDCAFSADGE---YLVTASSDHTARLWDLSAGK  291 (311)
T ss_pred             ceee-EEEeecCCceEEeeeeccCcc---EEEecCCCCceeecccccCc
Confidence            6222 222233445799999988777   99999999999999999886

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=9.9e-33  Score=229.91  Aligned_cols=244  Identities=20%  Similarity=0.329  Sum_probs=217.4

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce--E-EEEeCCCEEEEE-cCCeEEEEE
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV--G-CMISEGPWIFIG-VTNFVKAWN  216 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~--~-~~~~~~~~l~~~-~~~~i~v~d  216 (393)
                      +..++|++|...|.++.|++|+++|+++|.||.+.|||.-+...++.++.+..-  . .+.|.+.++++| .|+...||+
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP  125 (343)
T ss_pred             eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence            556899999999999999999999999999999999999999888888887653  2 344789999986 899999999


Q ss_pred             CCCC--c-----eeeecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CCE
Q 016224          217 TQTN--T-----DLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANK  285 (393)
Q Consensus       217 ~~~~--~-----~~~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~  285 (393)
                      +.+.  +     ...+.+|.+.+.++.|-+| .|++++.|.+..+||++++    +....+.+|.+.|.++++.   ++.
T Consensus       126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g----~~~~~f~GH~gDV~slsl~p~~~nt  201 (343)
T KOG0286|consen  126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETG----QQTQVFHGHTGDVMSLSLSPSDGNT  201 (343)
T ss_pred             cccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccc----eEEEEecCCcccEEEEecCCCCCCe
Confidence            9855  2     1268899999999999888 9999999999999999998    6678899999999999875   578


Q ss_pred             EEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEe
Q 016224          286 LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCG  363 (393)
Q Consensus       286 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  363 (393)
                      +++|+.|+..+|||++.+.++++|.+|...|+++.|.  |.-+++|+.|++.++||++...++..+.......++.+++|
T Consensus       202 FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~F  281 (343)
T KOG0286|consen  202 FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAF  281 (343)
T ss_pred             EEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEE
Confidence            9999999999999999999999999999999999998  67899999999999999999988888877677778999999


Q ss_pred             eeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          364 MPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       364 ~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      +..+.   +|++|..|.++.+||.-.++
T Consensus       282 S~SGR---lLfagy~d~~c~vWDtlk~e  306 (343)
T KOG0286|consen  282 SKSGR---LLFAGYDDFTCNVWDTLKGE  306 (343)
T ss_pred             ccccc---EEEeeecCCceeEeeccccc
Confidence            77655   99999999999999975543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.8e-34  Score=250.12  Aligned_cols=271  Identities=19%  Similarity=0.311  Sum_probs=230.0

Q ss_pred             eecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEE
Q 016224          108 IKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA  185 (393)
Q Consensus       108 ~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  185 (393)
                      .+.+|..+.|.++  .+++|+..|.+.+|+... +.....+++|.++|+++.|++++.+++||+.+|.|++|+..-....
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk  173 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK  173 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCce-eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH
Confidence            3458899999987  578999999999999743 3445567899999999999999999999999999999998654333


Q ss_pred             EEEecC-CceEEEE---eCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEecc
Q 016224          186 GVINLG-GEVGCMI---SEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV  258 (393)
Q Consensus       186 ~~~~~~-~~~~~~~---~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~  258 (393)
                      ....++ ..+.++.   .|.+++.++.|+.|+|||....+.- .+.+|.-.|.++.|+|.  ++++++.|..|++||.++
T Consensus       174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS  253 (464)
T KOG0284|consen  174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS  253 (464)
T ss_pred             HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence            322333 4444443   3677888889999999999887664 78999999999999998  999999999999999999


Q ss_pred             CCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc---CCEEEEEeCCC
Q 016224          259 TTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDK  333 (393)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg  333 (393)
                      +    ..+.++.+|...|+.+.|+  +++|++++.|..++++|+++.+.+.++++|+..++++.|+   ..+|.+|+.||
T Consensus       254 g----~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg  329 (464)
T KOG0284|consen  254 G----SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG  329 (464)
T ss_pred             c----chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCC
Confidence            8    6788899999999999996  5699999999999999999999999999999999999998   57999999999


Q ss_pred             cEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          334 TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       334 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      .|..|.+...+.+.. ....++..|.+++|+|-+.   +|++|+.|.++++|.-
T Consensus       330 svvh~~v~~~~p~~~-i~~AHd~~iwsl~~hPlGh---il~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  330 SVVHWVVGLEEPLGE-IPPAHDGEIWSLAYHPLGH---ILATGSNDRTVRFWTR  379 (464)
T ss_pred             ceEEEeccccccccC-CCcccccceeeeeccccce---eEeecCCCcceeeecc
Confidence            999999874443333 3345556799999999877   9999999999999963

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.8e-32  Score=227.26  Aligned_cols=280  Identities=20%  Similarity=0.283  Sum_probs=235.5

Q ss_pred             CCcccccceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEE
Q 016224           99 NSNINNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRV  176 (393)
Q Consensus        99 ~~~~~~~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~i  176 (393)
                      ..++.....|++.|++++|.|++  +++|+.|..|.+|++....+-...+++|+++|..+.|.+|+..|++++.|.+|+.
T Consensus        37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~  116 (338)
T KOG0265|consen   37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG  116 (338)
T ss_pred             cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence            34456677899999999999874  4579999999999977655777889999999999999999999999999999999


Q ss_pred             EECCCCeEEEEEecCCceEEEEe---CCCEEE-EE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCC
Q 016224          177 WDCASGQCAGVINLGGEVGCMIS---EGPWIF-IG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDG  249 (393)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~~---~~~~l~-~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg  249 (393)
                      ||+++|++++.++.+........   -+..++ ++ .|+++++||+++...+.......+++++.|...  .+++|+-|+
T Consensus       117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn  196 (338)
T KOG0265|consen  117 WDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN  196 (338)
T ss_pred             EecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence            99999999999998877655443   344444 44 778999999999998888888899999999876  999999999


Q ss_pred             cEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCC----cceeeEeccCcc--ceE--EE
Q 016224          250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET----LQCIQTLTEHTS--VVM--SL  319 (393)
Q Consensus       250 ~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~----~~~~~~~~~~~~--~v~--~l  319 (393)
                      .|++||++..    .....+.+|...|+.++.+  +.++.+-+.|.++++||++-    .+++..+.+|..  .++  ..
T Consensus       197 ~ikvWd~r~~----d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c  272 (338)
T KOG0265|consen  197 DIKVWDLRKN----DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC  272 (338)
T ss_pred             ceeeeccccC----cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhccee
Confidence            9999999987    6678899999999998875  77999999999999999985    345777776543  333  34


Q ss_pred             EEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          320 LCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       320 ~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      +|+  +.++.+|+.|..+++||......+..+.+|...  |..+.|+|..+   +|.+++.|.+|++=++
T Consensus       273 swsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gs--vn~~~Fhp~e~---iils~~sdk~i~lgei  337 (338)
T KOG0265|consen  273 SWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGS--VNEVDFHPTEP---IILSCSSDKTIYLGEI  337 (338)
T ss_pred             eccCCCCccccccccceEEEeecccccEEEEcCCccee--EEEeeecCCCc---EEEEeccCceeEeecc
Confidence            455  568999999999999999877777777776654  99999999877   9999999999987554

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=8.2e-33  Score=258.12  Aligned_cols=233  Identities=23%  Similarity=0.380  Sum_probs=208.2

Q ss_pred             ceEEeeEecCcE--EEecCCCeEEEEECCCC------------------------------cEEEEEecCCcCCEEEEEe
Q 016224          111 DILCRNWVQGNC--MYGEKCKFLHSWTVGDG------------------------------FKLLTQLEGHQKVVSGITL  158 (393)
Q Consensus       111 ~i~c~~~~~~~~--~~g~~dg~i~vwd~~~~------------------------------~~~~~~l~~h~~~I~~i~~  158 (393)
                      .++|..|+++..  +.|..|..|++|.+...                              ....+++.+|+++|..+.|
T Consensus       380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF  459 (707)
T KOG0263|consen  380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF  459 (707)
T ss_pred             cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence            889999998853  45889999999998721                              0123567899999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEe
Q 016224          159 PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVG  238 (393)
Q Consensus       159 s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~  238 (393)
                      +|+.++|+++|.|++|++|.+.+..++-.                                     ..+|..+|..+.|+
T Consensus       460 sPd~rfLlScSED~svRLWsl~t~s~~V~-------------------------------------y~GH~~PVwdV~F~  502 (707)
T KOG0263|consen  460 SPDRRFLLSCSEDSSVRLWSLDTWSCLVI-------------------------------------YKGHLAPVWDVQFA  502 (707)
T ss_pred             cccccceeeccCCcceeeeecccceeEEE-------------------------------------ecCCCcceeeEEec
Confidence            99999999999999999999999877643                                     45899999999999


Q ss_pred             CC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC--CEEEEecCCCcEEEeeCCCcceeeEeccCcc
Q 016224          239 ND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQCIQTLTEHTS  314 (393)
Q Consensus       239 ~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  314 (393)
                      |.  +||+++.|++-++|.....    .+.+.+.+|-..|.|+.|.+  +++++|+.|.+|++||+.+|..++.|.+|.+
T Consensus       503 P~GyYFatas~D~tArLWs~d~~----~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~  578 (707)
T KOG0263|consen  503 PRGYYFATASHDQTARLWSTDHN----KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG  578 (707)
T ss_pred             CCceEEEecCCCceeeeeecccC----CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC
Confidence            98  9999999999999988775    77888999999999998875  4899999999999999999999999999999


Q ss_pred             ceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          315 VVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       315 ~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      +|.+++|+  |.+|++|+.|+.|.|||+.++..+..+.+|  ...+.++.|+.++.   +|++|+.|++|++||+..
T Consensus       579 ~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H--t~ti~SlsFS~dg~---vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  579 PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH--TGTIYSLSFSRDGN---VLASGGADNSVRLWDLTK  650 (707)
T ss_pred             ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc--cCceeEEEEecCCC---EEEecCCCCeEEEEEchh
Confidence            99999999  889999999999999999999988888888  44599999988776   999999999999999864

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=4.7e-34  Score=242.95  Aligned_cols=232  Identities=25%  Similarity=0.410  Sum_probs=208.5

Q ss_pred             CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CceEEEEeCCCEEEEE-cCCeEEEEECCCCcee-ee
Q 016224          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-GEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SL  225 (393)
Q Consensus       149 h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~  225 (393)
                      ....|.|+.+.  ...+++|..|.+|+|||..+.++...+..+ +.+.|+..+.+++++| .|.+|++||.++++.+ .+
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tl  273 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTL  273 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHH
Confidence            45789999884  568999999999999999999888877655 6678888888888887 7789999999999998 88


Q ss_pred             cCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcce
Q 016224          226 SGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQC  305 (393)
Q Consensus       226 ~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~  305 (393)
                      ..|...|..+.|++.++++++.|.+|.+||+..... ..+...+.+|...|..+.|+.+++++++.|.+|++|++.+++.
T Consensus       274 ihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~-it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~ef  352 (499)
T KOG0281|consen  274 IHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEF  352 (499)
T ss_pred             hhhcceeEEEEEeCCEEEEecCCceeEEEeccCchH-HHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceee
Confidence            899999999999999999999999999999988753 3556778899999999999999999999999999999999999


Q ss_pred             eeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEE
Q 016224          306 IQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFY  385 (393)
Q Consensus       306 ~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iw  385 (393)
                      ++++.+|...|.|+.+.++++++|+.|.+|++||+..+..+..+.+|.+-  |.++.|     +.+.|++|+.||+|++|
T Consensus       353 vRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeL--vRciRF-----d~krIVSGaYDGkikvW  425 (499)
T KOG0281|consen  353 VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL--VRCIRF-----DNKRIVSGAYDGKIKVW  425 (499)
T ss_pred             ehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHh--hhheee-----cCceeeeccccceEEEE
Confidence            99999999999999999999999999999999999999999999998876  666655     33379999999999999


Q ss_pred             eCCce
Q 016224          386 DLPSV  390 (393)
Q Consensus       386 d~~s~  390 (393)
                      |+..+
T Consensus       426 dl~aa  430 (499)
T KOG0281|consen  426 DLQAA  430 (499)
T ss_pred             ecccc
Confidence            99765

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.3e-31  Score=236.36  Aligned_cols=276  Identities=19%  Similarity=0.305  Sum_probs=230.2

Q ss_pred             eeecceEEeeEecC---cEEEecCCCeEEEEECCCC-cE--EEEEec------C----CcCCEEEEEecCCCCEEEEEeC
Q 016224          107 VIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDG-FK--LLTQLE------G----HQKVVSGITLPSGSDKLYSGSK  170 (393)
Q Consensus       107 ~~~~~i~c~~~~~~---~~~~g~~dg~i~vwd~~~~-~~--~~~~l~------~----h~~~I~~i~~s~~~~~l~s~s~  170 (393)
                      .|+.+|+|.+|+|-   .+.+|+.|-..++|++... ..  ....|+      +    -...|++++|+.+|..||+|+.
T Consensus       176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~  255 (524)
T KOG0273|consen  176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE  255 (524)
T ss_pred             cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence            37889999999875   3446889999999998741 01  111111      1    2368999999999999999999


Q ss_pred             CCcEEEEECCCCeEEEEEe-cCCceEEEE--eCCCEEEE-EcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC-EEEE
Q 016224          171 DETVRVWDCASGQCAGVIN-LGGEVGCMI--SEGPWIFI-GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFA  244 (393)
Q Consensus       171 dg~v~iwd~~~~~~~~~~~-~~~~~~~~~--~~~~~l~~-~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~-~l~~  244 (393)
                      ||.++||+.. |..+.++. +..++..+-  ..|.+|++ +.|+++.+||..+++.. .+.-|..+-..+.|-.+ .|++
T Consensus       256 ~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~t  334 (524)
T KOG0273|consen  256 DGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFAT  334 (524)
T ss_pred             CcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEee
Confidence            9999999986 45555554 456665554  36667776 49999999999999887 45556666578888665 9999


Q ss_pred             EeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc
Q 016224          245 GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW  322 (393)
Q Consensus       245 ~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~  322 (393)
                      .+.|+.|+|+.+...    .|..++.+|.+.|.++.|+  +.+|++++.|++++||..........+.+|...|..+.|+
T Consensus       335 s~td~~i~V~kv~~~----~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~ws  410 (524)
T KOG0273|consen  335 SSTDGCIHVCKVGED----RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWS  410 (524)
T ss_pred             cCCCceEEEEEecCC----CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeec
Confidence            999999999999877    7889999999999999999  6799999999999999999999999999999999999998


Q ss_pred             C-----------CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          323 D-----------QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       323 ~-----------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      +           ..+++++.|++|++||+..+.++..+..|..+  |.+++|+|++.   ++++|+.||.|++|+.++++
T Consensus       411 p~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~p--VysvafS~~g~---ylAsGs~dg~V~iws~~~~~  485 (524)
T KOG0273|consen  411 PTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEP--VYSVAFSPNGR---YLASGSLDGCVHIWSTKTGK  485 (524)
T ss_pred             CCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCc--eEEEEecCCCc---EEEecCCCCeeEeccccchh
Confidence            2           47999999999999999999998888777665  99999998877   99999999999999999987


Q ss_pred             e
Q 016224          392 I  392 (393)
Q Consensus       392 l  392 (393)
                      +
T Consensus       486 l  486 (524)
T KOG0273|consen  486 L  486 (524)
T ss_pred             e
Confidence            6

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.2e-30  Score=230.51  Aligned_cols=270  Identities=28%  Similarity=0.461  Sum_probs=226.4

Q ss_pred             eeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 016224          107 VIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC  184 (393)
Q Consensus       107 ~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~  184 (393)
                      .|..+|.|+.|+++  .+++++.+|.|++|++.++ +....+..|...+..+.|++++++|++++.||.|++||+.+++.
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~   85 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG-ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC   85 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC-CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc
Confidence            56789999999986  4557888999999999987 67788899999999999999999999999999999999998877


Q ss_pred             EEEEecCC-ceEEEE--eCCCEEEEEc-CCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEec
Q 016224          185 AGVINLGG-EVGCMI--SEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN  257 (393)
Q Consensus       185 ~~~~~~~~-~~~~~~--~~~~~l~~~~-~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~  257 (393)
                      +..+..+. .+.++.  +++.+++++. ++.|.+|++.+++.. .+..|...+.++.++++  ++++++.++.|++||++
T Consensus        86 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~  165 (289)
T cd00200          86 VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR  165 (289)
T ss_pred             eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc
Confidence            77776544 444433  4567888876 999999999977665 66678889999999995  77777779999999998


Q ss_pred             cCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcC--CEEEEEeCCC
Q 016224          258 VTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD--QFLLSCSLDK  333 (393)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg  333 (393)
                      ..    +....+..|...+.++.++++  .+++++.|+.|++||+++++.+..+..|...+.++.+++  .++++++.|+
T Consensus       166 ~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  241 (289)
T cd00200         166 TG----KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG  241 (289)
T ss_pred             cc----ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence            65    445666678888999998754  899999999999999999999999988999999999984  5777777799


Q ss_pred             cEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          334 TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       334 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                      .|++||+.+.+....+..+.  ..+..+.|+++..   +|++++.||.|++|+
T Consensus       242 ~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~---~l~~~~~d~~i~iw~  289 (289)
T cd00200         242 TIRVWDLRTGECVQTLSGHT--NSVTSLAWSPDGK---RLASGSADGTIRIWD  289 (289)
T ss_pred             cEEEEEcCCceeEEEccccC--CcEEEEEECCCCC---EEEEecCCCeEEecC
Confidence            99999998777666666443  4588999988755   899999999999996

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.3e-31  Score=227.38  Aligned_cols=274  Identities=21%  Similarity=0.344  Sum_probs=233.8

Q ss_pred             ceeecceEEeeEecCcE--EEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 016224          106 AVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ  183 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~~~--~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~  183 (393)
                      ..|-+-|.|+++.|.+.  .+|+.|++|.|||+.++ ++..++.+|...|..+++|+-..||++++.|+.|+.||++..+
T Consensus       148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg-~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk  226 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG-QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK  226 (460)
T ss_pred             hhccceEEEEeeCCCceeEEecCCCceeEEEEcccC-eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhh
Confidence            45778999999998864  46999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             EEEEEecC-CceEEEE--eCCCEEEE-EcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEe
Q 016224          184 CAGVINLG-GEVGCMI--SEGPWIFI-GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF  256 (393)
Q Consensus       184 ~~~~~~~~-~~~~~~~--~~~~~l~~-~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~  256 (393)
                      .++.+..+ ..+.++.  +.-..|++ +.|.++++||+++...+ .+.+|..+|..+.+.+-  .+++|+.|++|++||+
T Consensus       227 vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl  306 (460)
T KOG0285|consen  227 VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDL  306 (460)
T ss_pred             hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeee
Confidence            99888765 3444443  45566665 48889999999998877 89999999999999864  9999999999999999


Q ss_pred             ccCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc-CCEEEEEeCCC
Q 016224          257 NVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDK  333 (393)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg  333 (393)
                      +.+    +....+..|...|.+++.++.  .|++++.| .|+-|++..+..++.+.+|...|.++... +.++++|+..|
T Consensus       307 ~ag----kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng  381 (460)
T KOG0285|consen  307 RAG----KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNG  381 (460)
T ss_pred             ccC----ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEEEcCCce
Confidence            998    556778889999999998865  57777766 59999999999999999999999999987 77999999999


Q ss_pred             cEEEEEcCCCcceEEEEe------ecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          334 TIKVWFATDSGNLEVTYT------HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       334 ~i~iwd~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      .+.+||.+++...+....      ...+..+.+.+|...+.   .|+++..|.+|++|.-.
T Consensus       382 ~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~---rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  382 SIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGS---RLITGEADKTIKMYKED  439 (460)
T ss_pred             EEEEEecCcCcccccccccccCCccccccceeEEeecccCc---eEEeccCCcceEEEecc
Confidence            999999998877665532      22345577777755443   89999999999999753

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.8e-32  Score=217.86  Aligned_cols=245  Identities=20%  Similarity=0.281  Sum_probs=215.0

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc-eEEE--EeCC-CEEEEEcCCeEEEEE
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-VGCM--ISEG-PWIFIGVTNFVKAWN  216 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-~~~~--~~~~-~~l~~~~~~~i~v~d  216 (393)
                      +.++.+..|+++|..+.|+-+|+|.++++.|.+|++|+...+.+++++..++. +...  .+++ ++..+|.|..+.+||
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            45678899999999999999999999999999999999999999999987654 3332  2344 455567999999999


Q ss_pred             CCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCC
Q 016224          217 TQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDN  293 (393)
Q Consensus       217 ~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg  293 (393)
                      +.+++.. .+.+|..+|+.+.|+.+  .+++|+.|.++++||.++...  +|++.+......|.++...+..+++|+.||
T Consensus        88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~--ePiQildea~D~V~Si~v~~heIvaGS~DG  165 (307)
T KOG0316|consen   88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF--EPIQILDEAKDGVSSIDVAEHEIVAGSVDG  165 (307)
T ss_pred             cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCC--CccchhhhhcCceeEEEecccEEEeeccCC
Confidence            9999988 89999999999999988  999999999999999998764  888889888999999999999999999999


Q ss_pred             cEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCc
Q 016224          294 SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP  371 (393)
Q Consensus       294 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  371 (393)
                      +++.||++.|+....+-+|  +|+++.|+  ++..++++.|++|++.|-.+++.+....+|.....-+..++.....   
T Consensus       166 tvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdt---  240 (307)
T KOG0316|consen  166 TVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDT---  240 (307)
T ss_pred             cEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccce---
Confidence            9999999999887766544  78888887  7899999999999999999999999999988877777777766544   


Q ss_pred             EEEEEeCCCeEEEEeCCceee
Q 016224          372 VLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       372 ~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      .+++|++||.|++||+...++
T Consensus       241 hV~sgSEDG~Vy~wdLvd~~~  261 (307)
T KOG0316|consen  241 HVFSGSEDGKVYFWDLVDETQ  261 (307)
T ss_pred             eEEeccCCceEEEEEecccee
Confidence            899999999999999987654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.2e-32  Score=243.59  Aligned_cols=278  Identities=15%  Similarity=0.283  Sum_probs=235.1

Q ss_pred             ccceeecceEEeeEecC---cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 016224          104 NRAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA  180 (393)
Q Consensus       104 ~~~~~~~~i~c~~~~~~---~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~  180 (393)
                      ....|...|+++.|.+-   -+++++.|+.|+||++-+..++++++.+|..+|.+++|++++..++|++.|+.|++||++
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE  288 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE  288 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccc
Confidence            34568889999999873   345799999999999987559999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEecCCceEEEE--eCC-CEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEE
Q 016224          181 SGQCAGVINLGGEVGCMI--SEG-PWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILA  253 (393)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~--~~~-~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~v  253 (393)
                      +|+++..+.....+.++-  +++ ..+++| .|+.|+.||+++++.+ ....|.+.|..+.|-++  .+++.+.|++++|
T Consensus       289 TG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~ri  368 (503)
T KOG0282|consen  289 TGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRI  368 (503)
T ss_pred             cceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEE
Confidence            999999999988877765  344 455554 8999999999999987 77789999999999877  9999999999999


Q ss_pred             EEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCC---cceeeEeccCccce--EEEEEc--CCEE
Q 016224          254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLET---LQCIQTLTEHTSVV--MSLLCW--DQFL  326 (393)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~---~~~~~~~~~~~~~v--~~l~~~--~~~l  326 (393)
                      |+.+..... +.+.....|+.+...+.++++.+++-+.|+.|.+|.+..   ......|++|...-  ..+.|+  +.+|
T Consensus       369 We~~~~v~i-k~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l  447 (503)
T KOG0282|consen  369 WENRIPVPI-KNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTL  447 (503)
T ss_pred             EEcCCCccc-hhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeE
Confidence            999887442 344445567888888888899999999999999998754   23345677886554  455666  7899


Q ss_pred             EEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          327 LSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       327 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                      ++|+.||.+.+||.++.+.+..+..|..  .++.+.|+|..+.  .+||++.||.|++||
T Consensus       448 ~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~S--kvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  448 CSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPS--KVATCGWDGLIKIWD  503 (503)
T ss_pred             EeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcc--eeEecccCceeEecC
Confidence            9999999999999999888888887744  5999999998665  699999999999997

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.7e-30  Score=229.94  Aligned_cols=321  Identities=16%  Similarity=0.183  Sum_probs=260.9

Q ss_pred             CCCccCCCCcceeeccCCCCCCCCCCCCCCcccCCCCCCCcccccceeecceEEeeEecCcEE--EecCCCeEEEEECCC
Q 016224           61 PPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCM--YGEKCKFLHSWTVGD  138 (393)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~c~~~~~~~~~--~g~~dg~i~vwd~~~  138 (393)
                      |+.|...++.+.....+|.+.+-.|.+++....+...++.....+.+|..+++-..|+|.+.+  +|...|+|+|||...
T Consensus        11 ~~lPst~Rg~~~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~   90 (603)
T KOG0318|consen   11 ASLPSTERGVPIIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQ   90 (603)
T ss_pred             cCCCcccCCcceEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccC
Confidence            455667777777777788887788999898888888888888889999999999999999765  577889999999876


Q ss_pred             C-cEEEEEecCCcCCEEEEEecCCCCEEEEEeCC----CcEEEEECCCCeEEEEEecCCceEE-EE--eCC--CEEEEEc
Q 016224          139 G-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD----ETVRVWDCASGQCAGVINLGGEVGC-MI--SEG--PWIFIGV  208 (393)
Q Consensus       139 ~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~~~~~-~~--~~~--~~l~~~~  208 (393)
                      . .-+..+++.-.++|.+|+|+.|+++|+..+..    |.+.+||  +|..+..+..+..... +.  +..  +++.++.
T Consensus        91 ~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sd  168 (603)
T KOG0318|consen   91 KEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSD  168 (603)
T ss_pred             cceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccC
Confidence            3 23344778888999999999999999888753    4666776  6667777766654432 22  222  2334458


Q ss_pred             CCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeec---CceeeEEEEEEc
Q 016224          209 TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK---GHSLAVVSLVVG  282 (393)
Q Consensus       209 ~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~---~~~~~v~~l~~~  282 (393)
                      |+.|.+|+-...+.. .+..|...|.++.|+||  +|++++.||+|.+||-.++    +.+..+.   +|.+.|.+++|+
T Consensus       169 Dn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg----e~vg~l~~~~aHkGsIfalsWs  244 (603)
T KOG0318|consen  169 DNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG----EKVGELEDSDAHKGSIFALSWS  244 (603)
T ss_pred             CCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc----cEEEEecCCCCccccEEEEEEC
Confidence            889999998776655 77889999999999999  9999999999999999888    4445554   899999999997


Q ss_pred             C--CEEEEecCCCcEEEeeCCCcceeeEeccCcc---ceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCcc
Q 016224          283 A--NKLYSGSMDNSIRVWNLETLQCIQTLTEHTS---VVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHG  357 (393)
Q Consensus       283 ~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  357 (393)
                      +  .+|++++.|.+++|||+.+.++++++.....   .-..+.|..+.|++.+.+|+|.+++......+..+.+|...  
T Consensus       245 PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~--  322 (603)
T KOG0318|consen  245 PDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKS--  322 (603)
T ss_pred             CCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccc--
Confidence            4  5899999999999999999999999874432   33455667899999999999999999998888888888876  


Q ss_pred             EEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          358 VLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       358 v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      ++++..+++..   +|++|+.||.|.-|+..+|.-
T Consensus       323 ITaLtv~~d~~---~i~SgsyDG~I~~W~~~~g~~  354 (603)
T KOG0318|consen  323 ITALTVSPDGK---TIYSGSYDGHINSWDSGSGTS  354 (603)
T ss_pred             eeEEEEcCCCC---EEEeeccCceEEEEecCCccc
Confidence            77777777664   999999999999999998864

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=4.9e-30  Score=229.15  Aligned_cols=280  Identities=16%  Similarity=0.276  Sum_probs=227.4

Q ss_pred             cceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEec---CCcCCEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 016224          105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLE---GHQKVVSGITLPSGSDKLYSGSKDETVRVWDC  179 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~---~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~  179 (393)
                      ..+|...|.|+.|+|++  +++++.||+|.+||-.++ +.+..|.   +|++.|.+|+|+||+..|+|++.|.+++|||+
T Consensus       186 ~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg-e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdV  264 (603)
T KOG0318|consen  186 FREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG-EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDV  264 (603)
T ss_pred             ccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc-cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEe
Confidence            34567799999999985  446899999999999999 8888888   89999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCc-----eEEEEeCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcE
Q 016224          180 ASGQCAGVINLGGE-----VGCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAI  251 (393)
Q Consensus       180 ~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I  251 (393)
                      .+.++++++.....     +.++...+.++.++.+|.|.+++......+ .+.+|...|+++..+++  +|++|+.||.|
T Consensus       265 s~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I  344 (603)
T KOG0318|consen  265 STNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHI  344 (603)
T ss_pred             eccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceE
Confidence            99999999987654     567778888888999999999999988866 88999999999999998  99999999999


Q ss_pred             EEEEeccCCcccc-------Cc----------------------------------------------------------
Q 016224          252 LAWKFNVTTNCFE-------PA----------------------------------------------------------  266 (393)
Q Consensus       252 ~vwd~~~~~~~~~-------~~----------------------------------------------------------  266 (393)
                      .-|+...+.....       .+                                                          
T Consensus       345 ~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~  424 (603)
T KOG0318|consen  345 NSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVAC  424 (603)
T ss_pred             EEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEe
Confidence            9999765422100       00                                                          


Q ss_pred             ----eeec----------CceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcce--eeEeccCccceEEEEEc--CCEEEE
Q 016224          267 ----ASLK----------GHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQC--IQTLTEHTSVVMSLLCW--DQFLLS  328 (393)
Q Consensus       267 ----~~~~----------~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~--~~~l~s  328 (393)
                          ..+.          +......++..+++.++.|+.|+.|+||.+....+  ...+..|.+++++++++  +.||++
T Consensus       425 ~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~  504 (603)
T KOG0318|consen  425 ISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAA  504 (603)
T ss_pred             cCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEE
Confidence                0000          00111123333467899999999999999987554  33456799999999999  679999


Q ss_pred             EeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          329 CSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       329 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      +...+.+.+||+.+.+....... -+...+.+++|+|+..   +++||+-|..|.||++..
T Consensus       505 ~Da~rkvv~yd~~s~~~~~~~w~-FHtakI~~~aWsP~n~---~vATGSlDt~Viiysv~k  561 (603)
T KOG0318|consen  505 GDASRKVVLYDVASREVKTNRWA-FHTAKINCVAWSPNNK---LVATGSLDTNVIIYSVKK  561 (603)
T ss_pred             eccCCcEEEEEcccCceecceee-eeeeeEEEEEeCCCce---EEEeccccceEEEEEccC
Confidence            99999999999987665322222 2344699999999877   999999999999999864

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.2e-30  Score=223.44  Aligned_cols=277  Identities=17%  Similarity=0.261  Sum_probs=225.0

Q ss_pred             cceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224          105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      ...|+.+++++..+|+.  .++|+.|..-++|+..++ ....++.+|+..|+++.|+.+|.+||||+.+|.|+||+..++
T Consensus        60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g-e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg  138 (399)
T KOG0296|consen   60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG-EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG  138 (399)
T ss_pred             hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC-cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC
Confidence            45688899999999764  447999999999999999 788999999999999999999999999999999999999999


Q ss_pred             eEEEEEecC-Cce--EEEEeCCCEEEEE-cCCeEEEEECCCC-ceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEE
Q 016224          183 QCAGVINLG-GEV--GCMISEGPWIFIG-VTNFVKAWNTQTN-TDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK  255 (393)
Q Consensus       183 ~~~~~~~~~-~~~--~~~~~~~~~l~~~-~~~~i~v~d~~~~-~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd  255 (393)
                      .....+... ..+  ..+.+.+.+|++| .||.+-+|.+..+ ....+.+|..++++=.|.|+  .++++..||+|++|+
T Consensus       139 ~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn  218 (399)
T KOG0296|consen  139 GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWN  218 (399)
T ss_pred             ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEe
Confidence            888877522 222  3445778888887 8899999999995 44588999999999999998  999999999999999


Q ss_pred             eccCCccccCce-----------------eec------------------------------Cceee---EEEEEEcCC-
Q 016224          256 FNVTTNCFEPAA-----------------SLK------------------------------GHSLA---VVSLVVGAN-  284 (393)
Q Consensus       256 ~~~~~~~~~~~~-----------------~~~------------------------------~~~~~---v~~l~~~~~-  284 (393)
                      +.++....+...                 .+.                              .+...   |-++.++.. 
T Consensus       219 ~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l  298 (399)
T KOG0296|consen  219 PKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL  298 (399)
T ss_pred             cCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccccc
Confidence            988743211110                 000                              00111   111112222 


Q ss_pred             -EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcC-CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEE
Q 016224          285 -KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD-QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALC  362 (393)
Q Consensus       285 -~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  362 (393)
                       +.|+|+.||+|.|||+...++.+.+ .|...|+.+.|.+ .+|++++.+|.|++||.+++..+..+.+|...  |+.++
T Consensus       299 pL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~--Il~f~  375 (399)
T KOG0296|consen  299 PLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMG--ILDFA  375 (399)
T ss_pred             chhhcccccceEEEEecccchhheec-cCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchh--eeEEE
Confidence             4788999999999999887765555 4888899999997 89999999999999999999998888888766  88888


Q ss_pred             eeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          363 GMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       363 ~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      .+|+..   +++|+|.|++.+||+++
T Consensus       376 ls~~~~---~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  376 LSPQKR---LVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EcCCCc---EEEEecCCCeEEEEecC
Confidence            888665   99999999999999986

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.8e-30  Score=211.82  Aligned_cols=247  Identities=17%  Similarity=0.338  Sum_probs=208.7

Q ss_pred             ecceEEeeEecCcE-EEecCCCeEEEEECCCCcE-EEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224          109 KTDILCRNWVQGNC-MYGEKCKFLHSWTVGDGFK-LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG  186 (393)
Q Consensus       109 ~~~i~c~~~~~~~~-~~g~~dg~i~vwd~~~~~~-~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  186 (393)
                      +..|..+...+++. +.+...-.|++||+.++.. ++.++.+|.+.|+++.|..+|+.++||+.||+++|||++...+.+
T Consensus        40 dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR  119 (311)
T KOG0315|consen   40 DSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR  119 (311)
T ss_pred             ccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccch
Confidence            44778888887754 4566777999999997644 899999999999999999999999999999999999999999999


Q ss_pred             EEecCCceEEEE--eCCCEEEEE-cCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccC
Q 016224          187 VINLGGEVGCMI--SEGPWIFIG-VTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT  259 (393)
Q Consensus       187 ~~~~~~~~~~~~--~~~~~l~~~-~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~  259 (393)
                      .++...++.++.  ++...|+++ .++.|++||+......  .+......|.++...++  +++++...|..++|++-..
T Consensus       120 ~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~  199 (311)
T KOG0315|consen  120 NYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNH  199 (311)
T ss_pred             hccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCC
Confidence            999888886665  444455554 8889999999988544  33445678999999888  9999999999999998764


Q ss_pred             Cc--cccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCc-ceeeEeccCccceEEEEEc--CCEEEEEeCC
Q 016224          260 TN--CFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETL-QCIQTLTEHTSVVMSLLCW--DQFLLSCSLD  332 (393)
Q Consensus       260 ~~--~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d  332 (393)
                      ..  .++++..++.|...+...-++  .++|++++.|.+++||+.++. +....+++|...+...+|+  +.||++++.|
T Consensus       200 ~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd  279 (311)
T KOG0315|consen  200 QTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSD  279 (311)
T ss_pred             CccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCC
Confidence            33  256778888999988877665  569999999999999999987 6677889999999999998  7899999999


Q ss_pred             CcEEEEEcCCCcceEEEEeecCC
Q 016224          333 KTIKVWFATDSGNLEVTYTHNEE  355 (393)
Q Consensus       333 g~i~iwd~~~~~~~~~~~~~~~~  355 (393)
                      +.+++||+..++.+....+|...
T Consensus       280 ~~~rlW~~~~~k~v~qy~gh~K~  302 (311)
T KOG0315|consen  280 HTARLWDLSAGKEVRQYQGHHKA  302 (311)
T ss_pred             CceeecccccCceeeecCCcccc
Confidence            99999999999888887777655

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-30  Score=213.46  Aligned_cols=240  Identities=24%  Similarity=0.364  Sum_probs=200.1

Q ss_pred             EEEEEecCCcCCEEEEEecCC-CCEEEEEeCCCcEEEEECCC-----CeEEEEEecCCce---EEEEeCCCEEEEE-cCC
Q 016224          141 KLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCAS-----GQCAGVINLGGEV---GCMISEGPWIFIG-VTN  210 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~-~~~l~s~s~dg~v~iwd~~~-----~~~~~~~~~~~~~---~~~~~~~~~l~~~-~~~  210 (393)
                      .+..++++|++.|+.++..+. .+.|++++.|.++.+|++..     |..++.+..+...   ..+.+++.+.+++ .|+
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~   85 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG   85 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence            566789999999999999775 67899999999999998754     5567777775543   3345788887765 999


Q ss_pred             eEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecC--ceeeEEEEEEcCC-
Q 016224          211 FVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKG--HSLAVVSLVVGAN-  284 (393)
Q Consensus       211 ~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~-  284 (393)
                      .+++||+.+++.. .+.+|...|.+++|++|  .+++|+.|.+|++|+.....     ..++..  +...|.++.|.++ 
T Consensus        86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-----k~t~~~~~~~~WVscvrfsP~~  160 (315)
T KOG0279|consen   86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-----KYTIHEDSHREWVSCVRFSPNE  160 (315)
T ss_pred             eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-----EEEEecCCCcCcEEEEEEcCCC
Confidence            9999999998665 89999999999999998  99999999999999987642     223322  3788999999865 


Q ss_pred             ---EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEE
Q 016224          285 ---KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVL  359 (393)
Q Consensus       285 ---~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  359 (393)
                         +|++++.|++|++||+++.+...++.+|.+.++.+.++  |..+++|+.||.+.+||+++++.+..+   .+...|.
T Consensus       161 ~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl---~a~~~v~  237 (315)
T KOG0279|consen  161 SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL---EAFDIVN  237 (315)
T ss_pred             CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec---cCCCeEe
Confidence               79999999999999999999999999999999999998  779999999999999999988875443   3445699


Q ss_pred             EEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          360 ALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       360 ~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      +++|+|...    .++...+..|+|||+++..+
T Consensus       238 sl~fspnry----wL~~at~~sIkIwdl~~~~~  266 (315)
T KOG0279|consen  238 SLCFSPNRY----WLCAATATSIKIWDLESKAV  266 (315)
T ss_pred             eEEecCCce----eEeeccCCceEEEeccchhh
Confidence            999988654    55555666799999998754

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.4e-31  Score=240.86  Aligned_cols=242  Identities=17%  Similarity=0.332  Sum_probs=218.5

Q ss_pred             EEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce---EEEEeCCCEEEEE-cCCeEEEEECC
Q 016224          143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV---GCMISEGPWIFIG-VTNFVKAWNTQ  218 (393)
Q Consensus       143 ~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~-~~~~i~v~d~~  218 (393)
                      .+++..|+..|.++.|+|....++++-..|.|.|||.++...++.+......   ..+....+++++| .|..|++|+..
T Consensus         6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn   85 (794)
T KOG0276|consen    6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN   85 (794)
T ss_pred             hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence            3456679999999999999999999999999999999999999998865433   3355678888888 55699999999


Q ss_pred             CCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC---CEEEEecCC
Q 016224          219 TNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMD  292 (393)
Q Consensus       219 ~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~d  292 (393)
                      +.+.+ .+..|.+.|.+++.+|.  ++++++.|-.|++||.+..   +.+.+.+.+|...|+++++++   +.|++++-|
T Consensus        86 t~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~---wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD  162 (794)
T KOG0276|consen   86 TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE---WACEQTFEGHEHYVMQVAFNPKDPNTFASASLD  162 (794)
T ss_pred             cceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc---eeeeeEEcCcceEEEEEEecCCCccceeeeecc
Confidence            99888 88999999999999998  9999999999999999876   477899999999999999974   589999999


Q ss_pred             CcEEEeeCCCcceeeEeccCccceEEEEEc-C---CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCC
Q 016224          293 NSIRVWNLETLQCIQTLTEHTSVVMSLLCW-D---QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE  368 (393)
Q Consensus       293 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  368 (393)
                      ++|+||.+.+..+..++++|...|+++.+. +   .+|++|+.|.+|+|||..+..+++.+.+|...  |..++|+|.-+
T Consensus       163 rTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N--vs~v~fhp~lp  240 (794)
T KOG0276|consen  163 RTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN--VSFVFFHPELP  240 (794)
T ss_pred             ccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc--ceEEEecCCCc
Confidence            999999999999999999999999999998 3   39999999999999999999999999988876  88899999888


Q ss_pred             CCcEEEEEeCCCeEEEEeCCceee
Q 016224          369 GKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       369 ~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                         +|++|++||+|+||+-.|.++
T Consensus       241 ---iiisgsEDGTvriWhs~Ty~l  261 (794)
T KOG0276|consen  241 ---IIISGSEDGTVRIWNSKTYKL  261 (794)
T ss_pred             ---EEEEecCCccEEEecCcceeh
Confidence               999999999999999988764

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.1e-29  Score=208.10  Aligned_cols=277  Identities=22%  Similarity=0.333  Sum_probs=222.7

Q ss_pred             cceeecceEEeeEecCc---EEEecCCCeEEEEECCCC--cEEEEEe-cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEE
Q 016224          105 RAVIKTDILCRNWVQGN---CMYGEKCKFLHSWTVGDG--FKLLTQL-EGHQKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~---~~~g~~dg~i~vwd~~~~--~~~~~~l-~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd  178 (393)
                      ...|+..+..++|++..   +++++.|+.|++|+...+  +.+...+ .+|+..|.+++|+|.|++|+++|.|.++.||.
T Consensus        10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~   89 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWK   89 (312)
T ss_pred             ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEee
Confidence            34566689999999983   668999999999998742  3555555 47999999999999999999999999999998


Q ss_pred             CCCC--eEEEEEecC-CceEEE--EeCCCEEEEE-cCCeEEEEECCCCcee----eecCCCCcEEEEEEeC--CEEEEEe
Q 016224          179 CASG--QCAGVINLG-GEVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTDL----SLSGPVGQVYAMAVGN--DLLFAGT  246 (393)
Q Consensus       179 ~~~~--~~~~~~~~~-~~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~~----~~~~~~~~v~~l~~~~--~~l~~~~  246 (393)
                      -..+  +++.+++.+ .++.++  ..+|.+|++. .|+.|-+|.+..+..+    .++.|...|..+.|+|  ++|++++
T Consensus        90 k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~S  169 (312)
T KOG0645|consen   90 KEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCS  169 (312)
T ss_pred             cCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEec
Confidence            7654  677777765 455554  4688898875 7889999999866654    7889999999999999  4999999


Q ss_pred             CCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCC
Q 016224          247 QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ  324 (393)
Q Consensus       247 ~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~  324 (393)
                      .|.+|++|+-.. ...+++...+.+|...|.+++|+  |..|++++.|++|+||-..+.-    -..|...+..+.|...
T Consensus       170 YDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~~~  244 (312)
T KOG0645|consen  170 YDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWDNG  244 (312)
T ss_pred             cCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeeccc
Confidence            999999998775 45578899999999999999997  5699999999999999865211    1237788999999988


Q ss_pred             EEEEEeCCCcEEEEEcCCC---cceEEE--EeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          325 FLLSCSLDKTIKVWFATDS---GNLEVT--YTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       325 ~l~s~s~dg~i~iwd~~~~---~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      .|++++.|+.|++|.-...   .....+  ..+.++..|.++.|.|...  ..|++++.||.|++|.+.
T Consensus       245 ~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~--~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  245 VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS--NRLASGGDDGIVNFWELE  311 (312)
T ss_pred             ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC--CceeecCCCceEEEEEec
Confidence            9999999999999976532   111111  1233444699999999422  379999999999999975

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.98  E-value=5e-31  Score=225.26  Aligned_cols=241  Identities=27%  Similarity=0.460  Sum_probs=207.0

Q ss_pred             cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-ceEE--EEeCCCEEEE-EcCCeEEEE
Q 016224          140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG-EVGC--MISEGPWIFI-GVTNFVKAW  215 (393)
Q Consensus       140 ~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~~~--~~~~~~~l~~-~~~~~i~v~  215 (393)
                      +++.+.+++|.+.|.|+++.|..+.|+||+.|++++|||+.+|+...++..+- .+..  +..-..++++ +.|+.|+.|
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW  220 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence            57778899999999999999999999999999999999999999998888543 3333  3345667775 588899999


Q ss_pred             ECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEec
Q 016224          216 NTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGS  290 (393)
Q Consensus       216 d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~  290 (393)
                      |++.++.+ ...+|-..|.+++.+|.  .|++++.|.++++||+++.    ..+..+.+|...|..+.+.  .-.+++|+
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr----~~V~~l~GH~~~V~~V~~~~~dpqvit~S  296 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR----ASVHVLSGHTNPVASVMCQPTDPQVITGS  296 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc----ceEEEecCCCCcceeEEeecCCCceEEec
Confidence            99999988 78999999999999986  9999999999999999997    6678899999999999887  55899999


Q ss_pred             CCCcEEEeeCCCcceeeEeccCccceEEEEEcCC--EEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCC
Q 016224          291 MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ--FLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE  368 (393)
Q Consensus       291 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  368 (393)
                      .|++|++||++.++-..++..|...|.+++.+++  .+++++.| .|+-|++..+..+..+.+|..-  +.++....|  
T Consensus       297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~i--intl~~nsD--  371 (460)
T KOG0285|consen  297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAI--INTLSVNSD--  371 (460)
T ss_pred             CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccce--eeeeeeccC--
Confidence            9999999999999999999999999999999854  56666655 7999999998888777766655  555544332  


Q ss_pred             CCcEEEEEeCCCeEEEEeCCcee
Q 016224          369 GKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       369 ~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                       + ++++|++.|.|.+||.++|-
T Consensus       372 -~-v~~~G~dng~~~fwdwksg~  392 (460)
T KOG0285|consen  372 -G-VLVSGGDNGSIMFWDWKSGH  392 (460)
T ss_pred             -c-eEEEcCCceEEEEEecCcCc
Confidence             2 89999999999999998863

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.3e-29  Score=241.16  Aligned_cols=275  Identities=23%  Similarity=0.423  Sum_probs=226.9

Q ss_pred             eeecceEEeeEecCc--EEEecCCCeEEEEECCCCcE--EEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEEC-CC
Q 016224          107 VIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFK--LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC-AS  181 (393)
Q Consensus       107 ~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~--~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~-~~  181 (393)
                      .+...|+|+.|++++  +++++.++.+++|+.... +  +++.+.+|...|.+++|+|+++++++++.|++|+|||+ ..
T Consensus       157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~-~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~  235 (456)
T KOG0266|consen  157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGI-KSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD  235 (456)
T ss_pred             cccCceEEEEEcCCCCeEEEccCCCcEEEeecccc-cchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence            346799999999774  446889999999999766 5  77788999999999999999999999999999999999 55


Q ss_pred             CeEEEEEecCCc-eEE--EEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEE
Q 016224          182 GQCAGVINLGGE-VGC--MISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAW  254 (393)
Q Consensus       182 ~~~~~~~~~~~~-~~~--~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vw  254 (393)
                      +.+++++..+.. +.+  +.+.++++++| .|++|++||+++++.. .+.+|.+.|++++|+++  +|++++.|+.|++|
T Consensus       236 ~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vw  315 (456)
T KOG0266|consen  236 GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVW  315 (456)
T ss_pred             CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEE
Confidence            588888876644 333  34577777776 8889999999998877 89999999999999998  99999999999999


Q ss_pred             EeccCCccccCceeecCcee--eEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEE---EEc--CCE
Q 016224          255 KFNVTTNCFEPAASLKGHSL--AVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSL---LCW--DQF  325 (393)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~~--~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l---~~~--~~~  325 (393)
                      |+.++...  +...+..+..  .+.++.++  +.++++++.|+.+++||+..+..+..+.+|...+.++   ...  +.+
T Consensus       316 d~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (456)
T KOG0266|consen  316 DLETGSKL--CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL  393 (456)
T ss_pred             ECCCCcee--eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCe
Confidence            99987521  2344444433  47788775  6699999999999999999999999999988864333   112  779


Q ss_pred             EEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe--CCCeEEEEeCC
Q 016224          326 LLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC--NDNSVRFYDLP  388 (393)
Q Consensus       326 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s--~dg~I~iwd~~  388 (393)
                      +++|+.|+.|++||+.+...+..+..|. ...+..+.+++...   ++++++  .|+.|++|..+
T Consensus       394 i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~---~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  394 IYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTEN---LIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             EEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcC---eeeecCcCCCceEEEecCC
Confidence            9999999999999999888888877774 44578888888766   888888  69999999865

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=2.8e-29  Score=232.95  Aligned_cols=274  Identities=21%  Similarity=0.356  Sum_probs=217.3

Q ss_pred             cceEEeeEe--cCcEEEec-CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224          110 TDILCRNWV--QGNCMYGE-KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG  186 (393)
Q Consensus       110 ~~i~c~~~~--~~~~~~g~-~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  186 (393)
                      .+|..+.|+  .+-+.+|+ .=|.+-||+..+. ..+...++|...|++++++|||+++|||+.||.|+|||..++-|..
T Consensus       308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE-sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v  386 (893)
T KOG0291|consen  308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE-SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFV  386 (893)
T ss_pred             ceeeEEEecccCCEEEEcCCccceEEEEEeecc-ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEE
Confidence            466667776  33444544 4589999999988 8888999999999999999999999999999999999999999999


Q ss_pred             EEecCCce---EEEEeCCCEEEE-EcCCeEEEEECCCCceeeecCC--CCcEEEEEEeCC--EEEEEeCCC-cEEEEEec
Q 016224          187 VINLGGEV---GCMISEGPWIFI-GVTNFVKAWNTQTNTDLSLSGP--VGQVYAMAVGND--LLFAGTQDG-AILAWKFN  257 (393)
Q Consensus       187 ~~~~~~~~---~~~~~~~~~l~~-~~~~~i~v~d~~~~~~~~~~~~--~~~v~~l~~~~~--~l~~~~~dg-~I~vwd~~  257 (393)
                      +|..+...   ..+...++.+++ +.||+|+.||+...+.......  ..+..+++.+|.  ++.+|+.|. .|++|+++
T Consensus       387 TFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q  466 (893)
T KOG0291|consen  387 TFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ  466 (893)
T ss_pred             EeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee
Confidence            99876543   233456776665 5999999999999887733333  345567777754  777777776 49999999


Q ss_pred             cCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcc-eeeEeccCccceEEEEEc--CCEEEEEeCC
Q 016224          258 VTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQ-CIQTLTEHTSVVMSLLCW--DQFLLSCSLD  332 (393)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~--~~~l~s~s~d  332 (393)
                      ++    +++..+.+|.++|.+++++  ++.|++++.|.+|++||+-... .+.++. +...+..++|.  |+.|+++..|
T Consensus       467 TG----qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTld  541 (893)
T KOG0291|consen  467 TG----QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLD  541 (893)
T ss_pred             cC----eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEec
Confidence            98    6788899999999987765  7799999999999999986542 344444 66678888887  8899999999


Q ss_pred             CcEEEEEcCCCcceEEEEe------------------ecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          333 KTIKVWFATDSGNLEVTYT------------------HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       333 g~i~iwd~~~~~~~~~~~~------------------~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      |.|.+||+....+...+.+                  .......+.+++++|+.   +|++|+....|++|+++++-|
T Consensus       542 gqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~---~IlAgG~sn~iCiY~v~~~vl  616 (893)
T KOG0291|consen  542 GQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGK---CILAGGESNSICIYDVPEGVL  616 (893)
T ss_pred             ceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCC---EEEecCCcccEEEEECchhhe
Confidence            9999999987655432221                  11224578899988876   999999999999999998754

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=4.3e-29  Score=231.65  Aligned_cols=279  Identities=16%  Similarity=0.264  Sum_probs=223.8

Q ss_pred             cceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224          105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      ...|...++|+++++|  .+++|+.||+|+|||...+ -++.++..|++.|+.+.|+..++.|++.+.||+|+.||+...
T Consensus       346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY  424 (893)
T KOG0291|consen  346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY  424 (893)
T ss_pred             ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence            4456779999999999  4668999999999999999 788899999999999999999999999999999999999999


Q ss_pred             eEEEEEecCCceE--EEE--eCCCEEEEEc-CC-eEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEE
Q 016224          183 QCAGVINLGGEVG--CMI--SEGPWIFIGV-TN-FVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILA  253 (393)
Q Consensus       183 ~~~~~~~~~~~~~--~~~--~~~~~l~~~~-~~-~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~v  253 (393)
                      +..+++..+.++.  ++.  +.|.++++|. |. .|.+|++++|+.+ .+.+|.++|.+++|++.  .|++++.|.+|++
T Consensus       425 rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRi  504 (893)
T KOG0291|consen  425 RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRI  504 (893)
T ss_pred             ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEE
Confidence            9999999887764  344  4588888884 43 8999999999999 89999999999999987  9999999999999


Q ss_pred             EEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEecc--------------------
Q 016224          254 WKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTE--------------------  311 (393)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--------------------  311 (393)
                      ||+-.....   ..+ ..+...+..+++.  |+.|++++.||.|.+||...+..+.++.+                    
T Consensus       505 W~if~s~~~---vEt-l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa  580 (893)
T KOG0291|consen  505 WDIFSSSGT---VET-LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSA  580 (893)
T ss_pred             EEeeccCce---eee-EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcc
Confidence            999776322   222 2345566666665  78999999999999999987665544422                    


Q ss_pred             CccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEe--------------------------------------
Q 016224          312 HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYT--------------------------------------  351 (393)
Q Consensus       312 ~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------------------------------------  351 (393)
                      .....+.++++  |.+|++|+....|+|||+.++-.+..+..                                      
T Consensus       581 ~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i  660 (893)
T KOG0291|consen  581 KGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRI  660 (893)
T ss_pred             cCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccc
Confidence            12356777776  88999999999999999986543322110                                      


Q ss_pred             ----------------ecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          352 ----------------HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       352 ----------------~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                                      ....+.+..+.|+|.+.   -++.++..| |.||.+.+.-+
T Consensus       661 ~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgr---aFAaatTEG-l~IYsld~~~~  713 (893)
T KOG0291|consen  661 DIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGR---AFAAATTEG-LLIYSLDTTIL  713 (893)
T ss_pred             cccCCccccCCccccccCceEEEEEEEECCCcC---eeeeecccc-eEEEecCCceE
Confidence                            00134577888888765   788888776 78888876654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=3.1e-30  Score=238.84  Aligned_cols=269  Identities=21%  Similarity=0.356  Sum_probs=222.7

Q ss_pred             ecceEEeeEec---CcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE-
Q 016224          109 KTDILCRNWVQ---GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC-  184 (393)
Q Consensus       109 ~~~i~c~~~~~---~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~-  184 (393)
                      ...|+.+.|..   +.++.++..+.+++|+..+. .+ ..+.+|+..|.++....+|.+|+||+.|.++++|.++++.. 
T Consensus       323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~-~c-~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~  400 (775)
T KOG0319|consen  323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTS-YC-QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK  400 (775)
T ss_pred             chhheeeeecCCccceEEEEeCCCceEEEecCCC-ce-EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch
Confidence            34677777764   46778999999999998876 33 37899999999999767788999999999999998855432 


Q ss_pred             ---EEEEecC-CceEEEEe---CCCEEE-EEcCCeEEEEECCCCce----e------eecCCCCcEEEEEEeCC--EEEE
Q 016224          185 ---AGVINLG-GEVGCMIS---EGPWIF-IGVTNFVKAWNTQTNTD----L------SLSGPVGQVYAMAVGND--LLFA  244 (393)
Q Consensus       185 ---~~~~~~~-~~~~~~~~---~~~~l~-~~~~~~i~v~d~~~~~~----~------~~~~~~~~v~~l~~~~~--~l~~  244 (393)
                         +.....+ ..+.++..   ...+++ ++.|.++++|++...+.    .      ....|...|++++++|+  +++|
T Consensus       401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT  480 (775)
T KOG0319|consen  401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT  480 (775)
T ss_pred             hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence               2222222 33333331   233444 45899999999987321    1      33569999999999998  9999


Q ss_pred             EeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc
Q 016224          245 GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW  322 (393)
Q Consensus       245 ~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~  322 (393)
                      |+.|.+.++|++...    .....+.+|...|.++.|+++  .++|++.|++|+||.+.++.++++|.+|...|....|-
T Consensus       481 ~SqDktaKiW~le~~----~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~  556 (775)
T KOG0319|consen  481 GSQDKTAKIWDLEQL----RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFI  556 (775)
T ss_pred             cccccceeeecccCc----eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeee
Confidence            999999999999954    778999999999999999865  89999999999999999999999999999999998887


Q ss_pred             --CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          323 --DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       323 --~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                        +..|++++.||-|+||++++..+...+-.|...  |.++.-++...   +++||+.||.|.+|.=.
T Consensus       557 ~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Dr--vWaL~~~~~~~---~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  557 RNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDR--VWALSVSPLLD---MFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             eCCcEEEeccCCCcEEEEeccchhhhhhhhhccce--eEEEeecCccc---eeEecCCCeEEEEeecC
Confidence              789999999999999999999999998888765  88888887766   89999999999999743

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.4e-30  Score=223.18  Aligned_cols=276  Identities=18%  Similarity=0.254  Sum_probs=227.0

Q ss_pred             cceeecceEEeeEecCc--EEEecCCCeEEEEECC--CCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 016224          105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVG--DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA  180 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~--~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~  180 (393)
                      ...|.++|.-+.|++++  +++++.|.+..+|++.  ..+++.+++.+|..+|..|.||||.++|++++.|..+.+||+.
T Consensus       220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~  299 (519)
T KOG0293|consen  220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVD  299 (519)
T ss_pred             HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCC
Confidence            45678899999999885  4578999999999875  3367889999999999999999999999999999999999999


Q ss_pred             CCeEEEEEecC--Cc--eEEEEeCCCEEEEE-cCCeEEEEECCCCceeeecCC-CCcEEEEEEeCC--EEEEEeCCCcEE
Q 016224          181 SGQCAGVINLG--GE--VGCMISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGP-VGQVYAMAVGND--LLFAGTQDGAIL  252 (393)
Q Consensus       181 ~~~~~~~~~~~--~~--~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~-~~~v~~l~~~~~--~l~~~~~dg~I~  252 (393)
                      +|.+...+...  ..  ..++.+++..+++| .|+.+..||+..+..-...+. ...|.+++..+|  ++++.+.|..|+
T Consensus       300 tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~  379 (519)
T KOG0293|consen  300 TGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIR  379 (519)
T ss_pred             cchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEeccccee
Confidence            99998888765  22  34566899888887 788999999998776554443 356899998887  888888999999


Q ss_pred             EEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEE--EEc---CCE
Q 016224          253 AWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSL--LCW---DQF  325 (393)
Q Consensus       253 vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l--~~~---~~~  325 (393)
                      +++..+...     ..+.....+|++++.+  +.++++.-.+..|++||++..+.+..+.+|...-.-+  +|-   ..+
T Consensus       380 l~~~e~~~d-----r~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~f  454 (519)
T KOG0293|consen  380 LYNREARVD-----RGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKF  454 (519)
T ss_pred             eechhhhhh-----hccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcce
Confidence            999887532     1123344567777765  6688888899999999999999999999988654333  343   369


Q ss_pred             EEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          326 LLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       326 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      +++||+|++|+||+..+++.+..+.+|...  |.+++|.|..+  .++|++++||+|+||....
T Consensus       455 iaSGSED~kvyIWhr~sgkll~~LsGHs~~--vNcVswNP~~p--~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  455 IASGSEDSKVYIWHRISGKLLAVLSGHSKT--VNCVSWNPADP--EMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             EEecCCCceEEEEEccCCceeEeecCCcce--eeEEecCCCCH--HHhhccCCCCeEEEecCCc
Confidence            999999999999999999999999998865  89999998755  4899999999999998753

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2e-29  Score=229.35  Aligned_cols=266  Identities=17%  Similarity=0.282  Sum_probs=224.6

Q ss_pred             eecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEE
Q 016224          108 IKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA  185 (393)
Q Consensus       108 ~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  185 (393)
                      +...|-|+.+.|..  .+.+-..|.|.|||.++. ..++.++-..-+|.+..|-...+.+++|+.|..|+||++.+++.+
T Consensus        12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq-tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV   90 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ-TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV   90 (794)
T ss_pred             cCCceeeeecCCCCceEEEeeecCeeEEEecccc-eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceee
Confidence            55688999999886  446889999999999998 899999999999999999999999999999999999999999999


Q ss_pred             EEEecCCce-EEE--EeCCCEEEEEc-CCeEEEEECCCCce--eeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEe
Q 016224          186 GVINLGGEV-GCM--ISEGPWIFIGV-TNFVKAWNTQTNTD--LSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKF  256 (393)
Q Consensus       186 ~~~~~~~~~-~~~--~~~~~~l~~~~-~~~i~v~d~~~~~~--~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~  256 (393)
                      ..|..+... .++  .|...++++++ |-.|++||-+..=.  ..+.+|...|.+++|+|+   .+++++-|++|++|.+
T Consensus        91 ~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWsl  170 (794)
T KOG0276|consen   91 KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSL  170 (794)
T ss_pred             EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEc
Confidence            999987654 333  36777777764 55999999987643  388999999999999986   9999999999999999


Q ss_pred             ccCCccccCceeecCceeeEEEEEEc-CC---EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCC--EEEEEe
Q 016224          257 NVTTNCFEPAASLKGHSLAVVSLVVG-AN---KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ--FLLSCS  330 (393)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~l~~~-~~---~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s  330 (393)
                      .+.    .+..++.+|...|.++.+- +.   +|++|+.|.+|+|||.++.+|++++.+|...|..+.|.+.  .+++|+
T Consensus       171 gs~----~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs  246 (794)
T KOG0276|consen  171 GSP----HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS  246 (794)
T ss_pred             CCC----CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec
Confidence            887    6778899999999999984 22   8999999999999999999999999999999999999975  799999


Q ss_pred             CCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEE
Q 016224          331 LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVR  383 (393)
Q Consensus       331 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~  383 (393)
                      .||+++||+..+-+....+....  ..+.+++..+.+.   .++.|.+.|.|.
T Consensus       247 EDGTvriWhs~Ty~lE~tLn~gl--eRvW~I~~~k~~~---~i~vG~Deg~i~  294 (794)
T KOG0276|consen  247 EDGTVRIWNSKTYKLEKTLNYGL--ERVWCIAAHKGDG---KIAVGFDEGSVT  294 (794)
T ss_pred             CCccEEEecCcceehhhhhhcCC--ceEEEEeecCCCC---eEEEeccCCcEE
Confidence            99999999987655443333322  2477776655433   577777777654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=4.3e-28  Score=247.01  Aligned_cols=274  Identities=16%  Similarity=0.208  Sum_probs=215.2

Q ss_pred             eeecceEEeeEecCc--EEEecCCCeEEEEECCCCc-------EEEEEecCCcCCEEEEEecC-CCCEEEEEeCCCcEEE
Q 016224          107 VIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGF-------KLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRV  176 (393)
Q Consensus       107 ~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~-------~~~~~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~i  176 (393)
                      .|...|.+++|++++  +++|+.|+.|+||+..+..       .....+. +...|.+++|++ ++.+|++++.||+|++
T Consensus       481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~l  559 (793)
T PLN00181        481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQV  559 (793)
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence            367789999999764  5689999999999975320       1223344 356899999987 5789999999999999


Q ss_pred             EECCCCeEEEEEecC-CceEEEE--e-CCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCC
Q 016224          177 WDCASGQCAGVINLG-GEVGCMI--S-EGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQD  248 (393)
Q Consensus       177 wd~~~~~~~~~~~~~-~~~~~~~--~-~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~d  248 (393)
                      ||+.+++.+..+..+ ..+.++.  + ++.+|+++ .|+.|++||+.++..+....+...|.++.|.+.   +|++|+.|
T Consensus       560 Wd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~d  639 (793)
T PLN00181        560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSAD  639 (793)
T ss_pred             EECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCC
Confidence            999999988888654 3454443  2 56677665 789999999998877743344568999999542   99999999


Q ss_pred             CcEEEEEeccCCccccCceeecCceeeEEEEEEc-CCEEEEecCCCcEEEeeCCC------cceeeEeccCccceEEEEE
Q 016224          249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG-ANKLYSGSMDNSIRVWNLET------LQCIQTLTEHTSVVMSLLC  321 (393)
Q Consensus       249 g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~l~~  321 (393)
                      +.|++||++...   .+...+.+|...|.++.|. +.+|++++.|++|++||++.      .+++.++.+|...+..+.+
T Consensus       640 g~I~iwD~~~~~---~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~  716 (793)
T PLN00181        640 HKVYYYDLRNPK---LPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL  716 (793)
T ss_pred             CeEEEEECCCCC---ccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEE
Confidence            999999998753   3456677899999999885 67899999999999999974      3578889999999988888


Q ss_pred             c--CCEEEEEeCCCcEEEEEcCCCcceEEEE-----------eecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          322 W--DQFLLSCSLDKTIKVWFATDSGNLEVTY-----------THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       322 ~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      +  +.+|++|+.|+.|++|+...........           .......+.+++|++++.   +|++|+.||.|+||++
T Consensus       717 s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~---~lva~~~dG~I~i~~~  792 (793)
T PLN00181        717 SVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS---TLVAANSTGNIKILEM  792 (793)
T ss_pred             cCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCC---eEEEecCCCcEEEEec
Confidence            7  6799999999999999986553332211           112234589999988766   8999999999999997

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5e-29  Score=201.90  Aligned_cols=271  Identities=20%  Similarity=0.294  Sum_probs=218.7

Q ss_pred             eeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 016224          107 VIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC  184 (393)
Q Consensus       107 ~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~  184 (393)
                      -++.+|..+.|+-+  .+++.+.|.+|++|+...+ .+++++.+|..+|..++.+.|...+++|+.|..|.+||+++|+.
T Consensus        15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg-~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv   93 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKV   93 (307)
T ss_pred             ccccceEEEEEccCCCEEEEcCCCceEEeeccccc-ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCee
Confidence            35668999999855  5678999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             EEEEecCC-ceEEEEe--CCCEEEEE-cCCeEEEEECCCCcee---eecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEec
Q 016224          185 AGVINLGG-EVGCMIS--EGPWIFIG-VTNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFN  257 (393)
Q Consensus       185 ~~~~~~~~-~~~~~~~--~~~~l~~~-~~~~i~v~d~~~~~~~---~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~  257 (393)
                      ++.+..+. .+..+..  +...+++| .|..+++||.+.....   .+....+.|.++......+++|+.||+++.||++
T Consensus        94 ~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR  173 (307)
T KOG0316|consen   94 DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIR  173 (307)
T ss_pred             eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEee
Confidence            99998764 4444433  45566655 8899999999876543   5566788999999999999999999999999999


Q ss_pred             cCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc----CCEEEEEeCCC
Q 016224          258 VTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW----DQFLLSCSLDK  333 (393)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~----~~~l~s~s~dg  333 (393)
                      .+.    +.....+|.....+++.+++..++++.|++|++.|-.+|++++.+++|...-..+.+.    ...+++|++||
T Consensus       174 ~G~----l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG  249 (307)
T KOG0316|consen  174 KGT----LSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDG  249 (307)
T ss_pred             cce----eehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCc
Confidence            984    3344455544444444468899999999999999999999999999998876555443    56899999999


Q ss_pred             cEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          334 TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       334 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      .|.+||+.+...+..+.. .....+..+.++|..+   -|+++. ++.+.+|.-
T Consensus       250 ~Vy~wdLvd~~~~sk~~~-~~~v~v~dl~~hp~~~---~f~~A~-~~~~~~~~~  298 (307)
T KOG0316|consen  250 KVYFWDLVDETQISKLSV-VSTVIVTDLSCHPTMD---DFITAT-GHGDLFWYQ  298 (307)
T ss_pred             eEEEEEeccceeeeeecc-CCceeEEeeecccCcc---ceeEec-CCceeceee
Confidence            999999987766655544 3344588899998766   455554 345566643

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=7.7e-30  Score=208.78  Aligned_cols=235  Identities=17%  Similarity=0.263  Sum_probs=195.8

Q ss_pred             ecceEEeeEecC---cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECCCCeE
Q 016224          109 KTDILCRNWVQG---NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQC  184 (393)
Q Consensus       109 ~~~i~c~~~~~~---~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~~~~~  184 (393)
                      ...+..++|++.   .+++++.||.+++||+.....+++.+++|+.+|.++.|++ ..+.++++|.|++||+|+...++.
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S  139 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS  139 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence            346778888754   5668999999999998766689999999999999999987 567788889999999999987776


Q ss_pred             EEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCc
Q 016224          185 AGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTN  261 (393)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~  261 (393)
                      +.++                                     .+|...|....|+|.   ++++++.|+.+++||++... 
T Consensus       140 v~Tf-------------------------------------~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g-  181 (311)
T KOG0277|consen  140 VQTF-------------------------------------NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG-  181 (311)
T ss_pred             eEee-------------------------------------cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC-
Confidence            6554                                     578889999999876   99999999999999998873 


Q ss_pred             cccCceeecCceeeEEEEEEc---CCEEEEecCCCcEEEeeCCC-cceeeEeccCccceEEEEEcC---CEEEEEeCCCc
Q 016224          262 CFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCWD---QFLLSCSLDKT  334 (393)
Q Consensus       262 ~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~---~~l~s~s~dg~  334 (393)
                        +.+ .+..|...+.+..|+   .+.++||+.|+.|++||+++ ..++.++.+|.-.|..+.|++   ..|++++.|-+
T Consensus       182 --k~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT  258 (311)
T KOG0277|consen  182 --KFM-SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT  258 (311)
T ss_pred             --cee-EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce
Confidence              333 378899999999885   67899999999999999987 457889999999999999995   58999999999


Q ss_pred             EEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          335 IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       335 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      ++|||............+.. .-+..+.|++..++  ++++.+.|+.++||+.
T Consensus       259 ~riw~~~~~ds~~e~~~~Ht-EFv~g~Dws~~~~~--~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  259 VRIWDPERQDSAIETVDHHT-EFVCGLDWSLFDPG--QVASTGWDELLYVWNP  308 (311)
T ss_pred             EEecccccchhhhhhhhccc-eEEeccccccccCc--eeeecccccceeeecc
Confidence            99999975544333333222 24778888887443  8999999999999984

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3e-28  Score=223.73  Aligned_cols=267  Identities=21%  Similarity=0.341  Sum_probs=228.0

Q ss_pred             eEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-
Q 016224          112 ILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-  190 (393)
Q Consensus       112 i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-  190 (393)
                      ..-+.|+..+.+..+.+..|++|+..++ +.......+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.. 
T Consensus       180 ~nlldWss~n~laValg~~vylW~~~s~-~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~  258 (484)
T KOG0305|consen  180 LNLLDWSSANVLAVALGQSVYLWSASSG-SVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS  258 (484)
T ss_pred             hhHhhcccCCeEEEEecceEEEEecCCC-ceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence            3446788888888888889999999988 55555555589999999999999999999999999999999998888877 


Q ss_pred             -CCceEEEEeCCCEEEEE-cCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCcccc
Q 016224          191 -GGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFE  264 (393)
Q Consensus       191 -~~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~  264 (393)
                       ...+.++.-....+.+| .++.|..+|++..+..  .+.+|..+|..+.|+++  +|++|+.|+.+.|||....    +
T Consensus       259 h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~----~  334 (484)
T KOG0305|consen  259 HASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP----E  334 (484)
T ss_pred             cCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc----c
Confidence             45567777777777776 7889999999988766  48889999999999998  9999999999999999554    7


Q ss_pred             CceeecCceeeEEEEEEcC---CEEEEec--CCCcEEEeeCCCcceeeEeccCccceEEEEEcCC--EEEEE--eCCCcE
Q 016224          265 PAASLKGHSLAVVSLVVGA---NKLYSGS--MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ--FLLSC--SLDKTI  335 (393)
Q Consensus       265 ~~~~~~~~~~~v~~l~~~~---~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~--s~dg~i  335 (393)
                      +...+..|...|.+++|++   +.||+|+  .|+.|++||..+++.+..+. -...|.+|.|+..  -|+++  ..++.|
T Consensus       335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i  413 (484)
T KOG0305|consen  335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQI  413 (484)
T ss_pred             ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcE
Confidence            7888999999999999974   5788866  69999999999999998886 4568999999943  24443  347789


Q ss_pred             EEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          336 KVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       336 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      .||+..+...+..+.+|...  |+.++++|++.   .|++|+.|.++++|++-.
T Consensus       414 ~lw~~ps~~~~~~l~gH~~R--Vl~la~SPdg~---~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  414 TLWKYPSMKLVAELLGHTSR--VLYLALSPDGE---TIVTGAADETLRFWNLFD  462 (484)
T ss_pred             EEEeccccceeeeecCCcce--eEEEEECCCCC---EEEEecccCcEEeccccC
Confidence            99999998888888887765  99999999876   899999999999999854

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=1.9e-28  Score=211.11  Aligned_cols=274  Identities=20%  Similarity=0.279  Sum_probs=213.9

Q ss_pred             cccceeecceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecC---CCCEEEEEeCCCcEEEEEC
Q 016224          103 NNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS---GSDKLYSGSKDETVRVWDC  179 (393)
Q Consensus       103 ~~~~~~~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~---~~~~l~s~s~dg~v~iwd~  179 (393)
                      .....|+.-|..++-.+..+++|+.||.+++||.. | +...++.+|.++|.+++|.-   ....|++++.|.++++|.+
T Consensus        99 l~~~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~-G-k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~  176 (423)
T KOG0313|consen   99 LQCFLHDDWVSSVKGASKWILTGSYDGTSRIWDLK-G-KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW  176 (423)
T ss_pred             cccccchhhhhhhcccCceEEEeecCCeeEEEecC-C-ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence            34445666667777777889999999999999975 4 68889999999999999843   3346999999999999999


Q ss_pred             CCCeEEEEE-----ecCCceEEEE--eCCCEEEE-EcCCeEEEEECCCCc--------------------------eeee
Q 016224          180 ASGQCAGVI-----NLGGEVGCMI--SEGPWIFI-GVTNFVKAWNTQTNT--------------------------DLSL  225 (393)
Q Consensus       180 ~~~~~~~~~-----~~~~~~~~~~--~~~~~l~~-~~~~~i~v~d~~~~~--------------------------~~~~  225 (393)
                      +.++.....     .+...+.++.  +++..+++ +.|..|.+|+..+..                          .+.+
T Consensus       177 ~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl  256 (423)
T KOG0313|consen  177 NVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL  256 (423)
T ss_pred             cCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence            877543222     2334454444  46666655 499999999932211                          2377


Q ss_pred             cCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCC
Q 016224          226 SGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET  302 (393)
Q Consensus       226 ~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~  302 (393)
                      .+|..+|.++.|++. .+++++.|.+|+.||+.++..    ...+. -.....+++..  .++|++|+.|..|++||.++
T Consensus       257 ~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~----~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~  331 (423)
T KOG0313|consen  257 EGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGL----KSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRT  331 (423)
T ss_pred             cccccceeeEEEcCCCceEeecccceEEEEEeecccc----eeeee-cCcceeEeecccccceeeecCCCCceeecCCCC
Confidence            899999999999887 999999999999999999843    33333 23456677765  45899999999999999997


Q ss_pred             cc---eeeEeccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCc-ceEEEEeecCCccEEEEEeeeCCCCCcEEEE
Q 016224          303 LQ---CIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSG-NLEVTYTHNEEHGVLALCGMPDSEGKPVLLC  375 (393)
Q Consensus       303 ~~---~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s  375 (393)
                      +.   ..++|.+|...|.++.|+   ..+|++++.|+++++||+++.. .+..+.+|..  .++++.|...    .+|++
T Consensus       332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D--Kvl~vdW~~~----~~IvS  405 (423)
T KOG0313|consen  332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND--KVLSVDWNEG----GLIVS  405 (423)
T ss_pred             CCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc--eEEEEeccCC----ceEEe
Confidence            53   467889999999999999   3589999999999999999877 6777777654  5999988642    27999


Q ss_pred             EeCCCeEEEEeCCc
Q 016224          376 SCNDNSVRFYDLPS  389 (393)
Q Consensus       376 ~s~dg~I~iwd~~s  389 (393)
                      |+.|.+|+|+.-..
T Consensus       406 GGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  406 GGADNKLRIFKGSP  419 (423)
T ss_pred             ccCcceEEEecccc
Confidence            99999999997543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=3.1e-30  Score=223.91  Aligned_cols=232  Identities=22%  Similarity=0.369  Sum_probs=200.7

Q ss_pred             CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCceEE--EEeCCCEEEEE-cCCeEEEEECCCCceee
Q 016224          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-GGEVGC--MISEGPWIFIG-VTNFVKAWNTQTNTDLS  224 (393)
Q Consensus       149 h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~~~~~--~~~~~~~l~~~-~~~~i~v~d~~~~~~~~  224 (393)
                      -+.+|..|.|.|+|+.|++|+..|.+.+|+..+-.....++. ...+.+  +.+++.++++| .++.|++|+...+....
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~  174 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI  174 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence            457899999999999999999999999999743222222222 233433  45789999988 66799999999888876


Q ss_pred             ecCCC-CcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEee
Q 016224          225 LSGPV-GQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWN  299 (393)
Q Consensus       225 ~~~~~-~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd  299 (393)
                      +..|. ..|.+++|+|+  .|++++.||+|+|||....    +....+.+|.-.|.++.|.+.  +|++++.|..|++||
T Consensus       175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~----kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD  250 (464)
T KOG0284|consen  175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP----KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD  250 (464)
T ss_pred             hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC----chhheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence            66665 89999999987  9999999999999999887    445667899999999999865  799999999999999


Q ss_pred             CCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe
Q 016224          300 LETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC  377 (393)
Q Consensus       300 ~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s  377 (393)
                      .++++++.++..|+..|..+.|.  +++|+++|.|..++++|+++.+.+..+..|..+  ++++.|+|-.++  +|.+|+
T Consensus       251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd--v~~~~WhP~~~~--lftsgg  326 (464)
T KOG0284|consen  251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD--VTSLTWHPLNES--LFTSGG  326 (464)
T ss_pred             CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhh--heeecccccccc--ceeecc
Confidence            99999999999999999999998  679999999999999999988888888888877  999999998765  899999


Q ss_pred             CCCeEEEEeCC
Q 016224          378 NDNSVRFYDLP  388 (393)
Q Consensus       378 ~dg~I~iwd~~  388 (393)
                      .||.|..|.+.
T Consensus       327 ~Dgsvvh~~v~  337 (464)
T KOG0284|consen  327 SDGSVVHWVVG  337 (464)
T ss_pred             CCCceEEEecc
Confidence            99999999987

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.97  E-value=5.1e-29  Score=232.83  Aligned_cols=197  Identities=18%  Similarity=0.319  Sum_probs=180.5

Q ss_pred             cceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224          105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      ...|.++|+...|+|+.  +++++.|+++++|.+.+. ..+-.+++|..+|.++.|+|-|-|+||+|.|++.++|.....
T Consensus       447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~-s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~  525 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW-SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN  525 (707)
T ss_pred             eecCCCceeeeeecccccceeeccCCcceeeeecccc-eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence            45688999999999885  457999999999999997 888899999999999999999999999999999999998876


Q ss_pred             eEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCC
Q 016224          183 QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT  260 (393)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~  260 (393)
                      +..+.                                     +.+|...|.|+.|+|+  ++++|+.|.+|++||+.++ 
T Consensus       526 ~PlRi-------------------------------------faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G-  567 (707)
T KOG0263|consen  526 KPLRI-------------------------------------FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG-  567 (707)
T ss_pred             Cchhh-------------------------------------hcccccccceEEECCcccccccCCCCceEEEEEcCCC-
Confidence            65544                                     3588999999999999  9999999999999999998 


Q ss_pred             ccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEE
Q 016224          261 NCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIK  336 (393)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~  336 (393)
                         ..++.+.+|..+|.+++++  |.+|++|+.|+.|.+||+.+++++..+.+|++.|.++.|+  |..|++|+.|.+|+
T Consensus       568 ---~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~  644 (707)
T KOG0263|consen  568 ---NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVR  644 (707)
T ss_pred             ---cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEE
Confidence               5578889999999999986  6799999999999999999999999999999999999998  88999999999999


Q ss_pred             EEEcCCC
Q 016224          337 VWFATDS  343 (393)
Q Consensus       337 iwd~~~~  343 (393)
                      +||+...
T Consensus       645 lWD~~~~  651 (707)
T KOG0263|consen  645 LWDLTKV  651 (707)
T ss_pred             EEEchhh
Confidence            9998654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=5.1e-28  Score=224.23  Aligned_cols=268  Identities=18%  Similarity=0.284  Sum_probs=224.0

Q ss_pred             cCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEe-cCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEE
Q 016224          119 QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM  197 (393)
Q Consensus       119 ~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~-s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~  197 (393)
                      ....++...|..+.++|.++. ++.+.+-|..+.|.+|+| -|+.++||.++..+.++++++.+..+.-...+.+.+.++
T Consensus       293 ~~~~l~vtaeQnl~l~d~~~l-~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL  371 (775)
T KOG0319|consen  293 MSQLLLVTAEQNLFLYDEDEL-TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSL  371 (775)
T ss_pred             cCceEEEEccceEEEEEcccc-EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeee
Confidence            456778889999999999888 999999999999999999 678899999999999999999988877333333445555


Q ss_pred             E--eCCCEEEEE-cCCeEEEEECCCCcee-----eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCcccc--
Q 016224          198 I--SEGPWIFIG-VTNFVKAWNTQTNTDL-----SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFE--  264 (393)
Q Consensus       198 ~--~~~~~l~~~-~~~~i~v~d~~~~~~~-----~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~--  264 (393)
                      .  ..|.+++++ .|+++++|.++.+...     ...+|...|.+++++..   +|++++.|.+|++|++........  
T Consensus       372 ~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~  451 (775)
T KOG0319|consen  372 DVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPI  451 (775)
T ss_pred             eecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccc
Confidence            4  567677765 8889999988544322     56789999999999654   999999999999999987332211  


Q ss_pred             ---CceeecCceeeEEEEEEcC--CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEE
Q 016224          265 ---PAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKV  337 (393)
Q Consensus       265 ---~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~i  337 (393)
                         .......|...|.+++..+  .+++||+.|.+.+||+++..+...++.+|...|.++.|+  ++.++|+|.|++|+|
T Consensus       452 ~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKI  531 (775)
T KOG0319|consen  452 VLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKI  531 (775)
T ss_pred             eehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEE
Confidence               1123456888898888764  489999999999999999999999999999999999999  569999999999999


Q ss_pred             EEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          338 WFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       338 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      |.+.+..++..+.+|...  |....|..++.   .|++++.||.|++|++.+.++
T Consensus       532 W~is~fSClkT~eGH~~a--Vlra~F~~~~~---qliS~~adGliKlWnikt~eC  581 (775)
T KOG0319|consen  532 WSISTFSCLKTFEGHTSA--VLRASFIRNGK---QLISAGADGLIKLWNIKTNEC  581 (775)
T ss_pred             EEeccceeeeeecCccce--eEeeeeeeCCc---EEEeccCCCcEEEEeccchhh
Confidence            999999999999888765  88888887665   899999999999999998754

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=5.6e-28  Score=229.81  Aligned_cols=239  Identities=29%  Similarity=0.491  Sum_probs=217.8

Q ss_pred             cceeecceEEeeEe--cCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224          105 RAVIKTDILCRNWV--QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       105 ~~~~~~~i~c~~~~--~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      -..|.+.|.++++.  .+.+++|+.|.++++||..++ ++.+.+.+|.+.|.++...  ..++++|+.|.+|++|++.++
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg-~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~  321 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG-ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNG  321 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC-cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCc
Confidence            34578899999998  778899999999999999999 9999999999999998875  457888999999999999999


Q ss_pred             eEEEEEe-cCCceEEEEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeC-CEEEEEeCCCcEEEEEecc
Q 016224          183 QCAGVIN-LGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGN-DLLFAGTQDGAILAWKFNV  258 (393)
Q Consensus       183 ~~~~~~~-~~~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~-~~l~~~~~dg~I~vwd~~~  258 (393)
                      .++..+. +...+.++..++.++++| .|+.|++|++.+++.+ .+.+|...|+++.+.+ +.+++|+.|+.|++||+++
T Consensus       322 ~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~  401 (537)
T KOG0274|consen  322 ACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRT  401 (537)
T ss_pred             ceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCc
Confidence            9999999 777888888888888876 8889999999999988 8999999999999999 7999999999999999998


Q ss_pred             CCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEecc-CccceEEEEEcCCEEEEEeCCCcEEE
Q 016224          259 TTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCWDQFLLSCSLDKTIKV  337 (393)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~l~s~s~dg~i~i  337 (393)
                      ..   +++..+.+|..-+..+.+.+++|++++.|++|++||..++++++++.+ |...|.++......+++++.|+++++
T Consensus       402 ~~---~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l  478 (537)
T KOG0274|consen  402 KR---KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKL  478 (537)
T ss_pred             hh---hhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEE
Confidence            64   567889999999999999999999999999999999999999999998 67889999888788999999999999


Q ss_pred             EEcCCCcceEEE
Q 016224          338 WFATDSGNLEVT  349 (393)
Q Consensus       338 wd~~~~~~~~~~  349 (393)
                      ||++++.....+
T Consensus       479 ~dl~~~~~~~~l  490 (537)
T KOG0274|consen  479 WDLRSGTLIRTL  490 (537)
T ss_pred             EecccCchhhhh
Confidence            999988776655

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=6.8e-28  Score=201.83  Aligned_cols=242  Identities=22%  Similarity=0.405  Sum_probs=195.4

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC-CeEEEEEecCC-ceEEE--EeCCCEEE-EEcCCeEEEE
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-GQCAGVINLGG-EVGCM--ISEGPWIF-IGVTNFVKAW  215 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~-~~~~~--~~~~~~l~-~~~~~~i~v~  215 (393)
                      .++..+.+|++.|..+.|+|+|.+||||+.|..|.+|++.. -+-...++.+. .+..+  ..++..++ +|.|.+|+.|
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            44567789999999999999999999999999999999643 23334444333 33222  24666665 5699999999


Q ss_pred             ECCCCcee-eecCCCCcEEEEEEeC---CEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEe
Q 016224          216 NTQTNTDL-SLSGPVGQVYAMAVGN---DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSG  289 (393)
Q Consensus       216 d~~~~~~~-~~~~~~~~v~~l~~~~---~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg  289 (393)
                      |+++++.. ....|...|+++....   .++.+++.|+++++||++..    +.++.+. ....++++.|.  ++.+++|
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k----~~~~t~~-~kyqltAv~f~d~s~qv~sg  192 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK----EAIKTFE-NKYQLTAVGFKDTSDQVISG  192 (338)
T ss_pred             ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc----chhhccc-cceeEEEEEecccccceeec
Confidence            99999988 8889999999988543   28999999999999999986    4444443 45677888886  5689999


Q ss_pred             cCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCC----cceEEEEee--cCCccEEEE
Q 016224          290 SMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDS----GNLEVTYTH--NEEHGVLAL  361 (393)
Q Consensus       290 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~--~~~~~v~~~  361 (393)
                      +-|+.|++||++......++.+|..+|+.+..+  +.++++-+.|.++++||++..    .++..+.++  ..+...+..
T Consensus       193 gIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c  272 (338)
T KOG0265|consen  193 GIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC  272 (338)
T ss_pred             cccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhccee
Confidence            999999999999999999999999999999887  789999999999999999743    234555543  445667888


Q ss_pred             EeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          362 CGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       362 ~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      +|+|+..   .+..|+.|..+++||..+.
T Consensus       273 swsp~~~---~i~ags~dr~vyvwd~~~r  298 (338)
T KOG0265|consen  273 SWSPNGT---KITAGSADRFVYVWDTTSR  298 (338)
T ss_pred             eccCCCC---ccccccccceEEEeecccc
Confidence            8888776   8999999999999998764

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=5.4e-29  Score=213.22  Aligned_cols=270  Identities=14%  Similarity=0.235  Sum_probs=218.0

Q ss_pred             ceeecceEEeeEecCc---EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224          106 AVIKTDILCRNWVQGN---CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~~---~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      ..|...|.|++-.+..   +++|+.||.|+|||+.+. .++.+++.|.+.|..|++..  ..+++++.|.+|+.|.++- 
T Consensus        63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR-~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-  138 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR-ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-  138 (433)
T ss_pred             cccccccchhhcCcchhhhhhccccCceEEEEehhhh-hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-
Confidence            4677899999988764   668999999999999987 88999999999999999987  6799999999999999875 


Q ss_pred             eEEEEEecCCceEEEEe-CCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEec
Q 016224          183 QCAGVINLGGEVGCMIS-EGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFN  257 (393)
Q Consensus       183 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~  257 (393)
                      ..++++.....+..+.. ...-+++.....|.|||.+....+ .+.-....|.++.|+|.   +|+++..|+.|.+||++
T Consensus       139 ~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R  218 (433)
T KOG0268|consen  139 PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLR  218 (433)
T ss_pred             CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecc
Confidence            46666665555544432 223344445568999999877766 77778889999999986   88899999999999999


Q ss_pred             cCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCC-cceeeEeccCccceEEEEEc--CCEEEEEeCC
Q 016224          258 VTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD  332 (393)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d  332 (393)
                      +.....+.+..+     .-..|+|+++  .|++|++|..++.||++. .+++..+.+|...|.++.|+  |+-+++||.|
T Consensus       219 ~~~Pl~KVi~~m-----RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD  293 (433)
T KOG0268|consen  219 QASPLKKVILTM-----RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD  293 (433)
T ss_pred             cCCccceeeeec-----cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccccc
Confidence            985433332222     3356778765  589999999999999987 45678889999999999999  7899999999


Q ss_pred             CcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          333 KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       333 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      .+|+||....+..-..... ..-..|.++.|+.|+.   ++++||+|+.|++|...
T Consensus       294 ksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dsk---yi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  294 KSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSK---YIISGSDDGNVRLWKAK  345 (433)
T ss_pred             ceEEEeecCCCcchhhhhH-hhhheeeEEEEecccc---EEEecCCCcceeeeecc
Confidence            9999999987655443333 3334699999999887   99999999999999864

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=1.1e-27  Score=197.53  Aligned_cols=273  Identities=18%  Similarity=0.228  Sum_probs=219.1

Q ss_pred             ceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 016224          106 AVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ  183 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~  183 (393)
                      ..|+.+++-+.|+.+  -+++.+.|.++.||-..+| +.+.++.+|++.|++++.+-+.++|+||+.|.++++||+++|+
T Consensus         7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG-erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk   85 (327)
T KOG0643|consen    7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG-ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK   85 (327)
T ss_pred             ccCccccceEEecCCCcEEEEecCCCCceEEEecCC-ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence            347889999999855  4668999999999999899 8999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCCceEEEE--eCCCEEEEEcC------CeEEEEECCC-------Cc-eeeecCCCCcEEEEEEeCC--EEEEE
Q 016224          184 CAGVINLGGEVGCMI--SEGPWIFIGVT------NFVKAWNTQT-------NT-DLSLSGPVGQVYAMAVGND--LLFAG  245 (393)
Q Consensus       184 ~~~~~~~~~~~~~~~--~~~~~l~~~~~------~~i~v~d~~~-------~~-~~~~~~~~~~v~~l~~~~~--~l~~~  245 (393)
                      ++..++.+.++..+.  .++.++++..|      +.|.++|++.       .+ .+.+..+.+.++.+-|.+-  .|++|
T Consensus        86 ~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G  165 (327)
T KOG0643|consen   86 QLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG  165 (327)
T ss_pred             EEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe
Confidence            999999988876553  56777666533      4799999983       33 3467778899999999886  99999


Q ss_pred             eCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcC
Q 016224          246 TQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD  323 (393)
Q Consensus       246 ~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~  323 (393)
                      .+||.|.+||++++.   +.+.....|...|..+.++  ..++++++.|.+-++||.++.++++++.. ..+|++.++++
T Consensus       166 he~G~is~~da~~g~---~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP  241 (327)
T KOG0643|consen  166 HEDGSISIYDARTGK---ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISP  241 (327)
T ss_pred             cCCCcEEEEEcccCc---eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-cccccceeccc
Confidence            999999999999874   5566667788899988886  45899999999999999999999999974 55888888874


Q ss_pred             --CEEEEE-eCCCc-E------------EEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          324 --QFLLSC-SLDKT-I------------KVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       324 --~~l~s~-s~dg~-i------------~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                        ++++.| +.+-. |            ++|++-..+++..+.+|-.  ++.+++++|++.   ..++|++||.|++...
T Consensus       242 ~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG--PINsvAfhPdGk---sYsSGGEDG~VR~h~F  316 (327)
T KOG0643|consen  242 LLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG--PINSVAFHPDGK---SYSSGGEDGYVRLHHF  316 (327)
T ss_pred             ccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc--CcceeEECCCCc---ccccCCCCceEEEEEe
Confidence              344444 33211 1            2233222334444555544  588999999877   7899999999999765


Q ss_pred             C
Q 016224          388 P  388 (393)
Q Consensus       388 ~  388 (393)
                      .
T Consensus       317 d  317 (327)
T KOG0643|consen  317 D  317 (327)
T ss_pred             c
Confidence            4

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=4.8e-27  Score=223.60  Aligned_cols=244  Identities=27%  Similarity=0.441  Sum_probs=200.2

Q ss_pred             EEEecCC-cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe--EEEEEecCC-ce--EEEEeCCCEEEEE-cCCeEEEE
Q 016224          143 LTQLEGH-QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ--CAGVINLGG-EV--GCMISEGPWIFIG-VTNFVKAW  215 (393)
Q Consensus       143 ~~~l~~h-~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~-~~--~~~~~~~~~l~~~-~~~~i~v~  215 (393)
                      ...+..| ...|+++.|+++|++|++++.|+.+++|+..+.+  ....+..+. .+  ..+.+++++++++ .|.+|++|
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw  230 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW  230 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence            3445444 7899999999999999999999999999997777  455543222 22  3455788888876 77899999


Q ss_pred             ECCCC-cee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEe
Q 016224          216 NTQTN-TDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSG  289 (393)
Q Consensus       216 d~~~~-~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg  289 (393)
                      |+... ..+ .+.+|...|++++|+++  ++++|+.|++|++||++++    ++...+.+|...|.+++++  +++|+++
T Consensus       231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~----~~~~~l~~hs~~is~~~f~~d~~~l~s~  306 (456)
T KOG0266|consen  231 DLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG----ECVRKLKGHSDGISGLAFSPDGNLLVSA  306 (456)
T ss_pred             eccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC----eEEEeeeccCCceEEEEECCCCCEEEEc
Confidence            99444 554 88899999999999998  9999999999999999996    7789999999999999986  6689999


Q ss_pred             cCCCcEEEeeCCCcc--eeeEeccCccc--eEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEe
Q 016224          290 SMDNSIRVWNLETLQ--CIQTLTEHTSV--VMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCG  363 (393)
Q Consensus       290 ~~dg~i~iwd~~~~~--~~~~~~~~~~~--v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  363 (393)
                      +.|+.|++||+.+++  ++..+..+...  ++++.|+  +.++++++.|+.+++||+.....+.....|...  +.++..
T Consensus       307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~--~~~~~~  384 (456)
T KOG0266|consen  307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL--VRCIFS  384 (456)
T ss_pred             CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc--ceeEec
Confidence            999999999999999  66788776665  8999998  779999999999999999988888888877765  222221


Q ss_pred             eeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          364 MPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       364 ~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      .-...++.++++|+.|+.|++|++.++..
T Consensus       385 ~~~~~~~~~i~sg~~d~~v~~~~~~s~~~  413 (456)
T KOG0266|consen  385 PTLSTGGKLIYSGSEDGSVYVWDSSSGGI  413 (456)
T ss_pred             ccccCCCCeEEEEeCCceEEEEeCCccch
Confidence            11244556999999999999999997643

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.4e-27  Score=225.07  Aligned_cols=271  Identities=20%  Similarity=0.347  Sum_probs=221.9

Q ss_pred             ceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 016224          111 DILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI  188 (393)
Q Consensus       111 ~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~  188 (393)
                      .+-.+.|.|..  ++++--.|.|++||..-+ .++..|.+|.++|..|+|+|++.+++||+.|-.|+||++.+.+|+.++
T Consensus        11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~-tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL   89 (1202)
T KOG0292|consen   11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMG-TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL   89 (1202)
T ss_pred             cccceecCCCCCEEEEeecCceeeeehhhhh-hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh
Confidence            55667787775  557888999999999988 899999999999999999999999999999999999999999999988


Q ss_pred             ecCCce-EEE--EeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCc
Q 016224          189 NLGGEV-GCM--ISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN  261 (393)
Q Consensus       189 ~~~~~~-~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~  261 (393)
                      ..+-.. ..+  ...-.+++++ .|.+|+||+.++.+.+ .+.+|.-.|.|..|+|.  ++++++-|.+|+|||+..-..
T Consensus        90 ~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRk  169 (1202)
T KOG0292|consen   90 LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRK  169 (1202)
T ss_pred             ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhc
Confidence            776543 333  3466777765 6679999999999988 89999999999999994  999999999999999864211


Q ss_pred             c-------------------------ccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcc--eeeEeccC
Q 016224          262 C-------------------------FEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQ--CIQTLTEH  312 (393)
Q Consensus       262 ~-------------------------~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~--~~~~~~~~  312 (393)
                      .                         ......+.+|...|...+|.+.  .|++|+.|..|++|.+..-+  .+.+..+|
T Consensus       170 k~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH  249 (1202)
T KOG0292|consen  170 KNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGH  249 (1202)
T ss_pred             cCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcc
Confidence            0                         0112456789999999999985  79999999999999986533  36677899


Q ss_pred             ccceEEEEEcC--CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          313 TSVVMSLLCWD--QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       313 ~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      ...|.++.|++  +++++.|+|++|+|||+.....++.+...+..  -..++.+|...    |+.++.|+-+.+|.++
T Consensus       250 ~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendR--FW~laahP~lN----LfAAgHDsGm~VFkle  321 (1202)
T KOG0292|consen  250 YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDR--FWILAAHPELN----LFAAGHDSGMIVFKLE  321 (1202)
T ss_pred             cCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCe--EEEEEecCCcc----eeeeecCCceEEEEEc
Confidence            99999999996  79999999999999999888877777655544  55566666554    5555567777777765

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.7e-28  Score=207.10  Aligned_cols=230  Identities=24%  Similarity=0.383  Sum_probs=203.2

Q ss_pred             eeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 016224          107 VIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC  184 (393)
Q Consensus       107 ~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~  184 (393)
                      .|...+..+.|...+  +++.+.|-.+.+||.++-+++++.+.+|+..|.+++|-|-|.+|++++.|.+|+.|++.++.+
T Consensus       148 GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c  227 (406)
T KOG0295|consen  148 GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC  227 (406)
T ss_pred             ccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccccee
Confidence            355567888887553  456888888999999987788999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCceEEEE---eCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC-----------------EE
Q 016224          185 AGVINLGGEVGCMI---SEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-----------------LL  242 (393)
Q Consensus       185 ~~~~~~~~~~~~~~---~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~-----------------~l  242 (393)
                      +.++..+.+...+.   .+|.+++++ .|.++++|-+.++... .+..|.-+|.+++|.|.                 ++
T Consensus       228 v~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l  307 (406)
T KOG0295|consen  228 VKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVL  307 (406)
T ss_pred             EEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEE
Confidence            99999887654443   478888775 7789999999998665 77888889999988542                 78


Q ss_pred             EEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEE
Q 016224          243 FAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLL  320 (393)
Q Consensus       243 ~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~  320 (393)
                      .+++.|++|++||+.++    .++.++.+|...|..++++  |++|+++..|+++++||+++++++.++..|...++++.
T Consensus       308 ~s~SrDktIk~wdv~tg----~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lD  383 (406)
T KOG0295|consen  308 GSGSRDKTIKIWDVSTG----MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLD  383 (406)
T ss_pred             EeecccceEEEEeccCC----eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEe
Confidence            99999999999999998    7789999999999999998  78999999999999999999999999999999999999


Q ss_pred             Ec--CCEEEEEeCCCcEEEEEc
Q 016224          321 CW--DQFLLSCSLDKTIKVWFA  340 (393)
Q Consensus       321 ~~--~~~l~s~s~dg~i~iwd~  340 (393)
                      |.  -.++++|+-|.++++|.-
T Consensus       384 fh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  384 FHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             cCCCCceEEeccccceeeeeec
Confidence            98  459999999999999963

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=1.6e-26  Score=220.68  Aligned_cols=229  Identities=17%  Similarity=0.216  Sum_probs=173.6

Q ss_pred             ecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCC-CCEEEEEeCCCcEEEEECCCCeE-EEEEecCCceEEEEeCCC
Q 016224          125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQC-AGVINLGGEVGCMISEGP  202 (393)
Q Consensus       125 g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~-~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~  202 (393)
                      |+.++.|++|+.... ..+..+.+|.+.|.+++|+|+ +++|+||+.|++|+|||+.++.. ...+              
T Consensus        50 GG~~gvI~L~~~~r~-~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i--------------  114 (568)
T PTZ00420         50 GGLIGAIRLENQMRK-PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI--------------  114 (568)
T ss_pred             CCceeEEEeeecCCC-ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc--------------
Confidence            677899999998876 788899999999999999996 78999999999999999976432 1100              


Q ss_pred             EEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEE
Q 016224          203 WIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSL  279 (393)
Q Consensus       203 ~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l  279 (393)
                                      ......+.+|...|.+++|+|+   +|++++.|+.|++||++++.    ....+. |...|.++
T Consensus       115 ----------------~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~----~~~~i~-~~~~V~Sl  173 (568)
T PTZ00420        115 ----------------KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK----RAFQIN-MPKKLSSL  173 (568)
T ss_pred             ----------------ccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc----EEEEEe-cCCcEEEE
Confidence                            0011245678899999999996   56789999999999998863    233333 45678888


Q ss_pred             EEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEE-------cCCEEEEEeCCC----cEEEEEcCCCcce
Q 016224          280 VVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC-------WDQFLLSCSLDK----TIKVWFATDSGNL  346 (393)
Q Consensus       280 ~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~-------~~~~l~s~s~dg----~i~iwd~~~~~~~  346 (393)
                      +|+  +.+|++++.|+.|+|||+++++.+.++.+|.+.+.+..+       ++.+|++++.|+    +|+|||++.....
T Consensus       174 swspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p  253 (568)
T PTZ00420        174 KWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA  253 (568)
T ss_pred             EECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc
Confidence            885  678999999999999999999999999999876543322       256888888774    7999999864443


Q ss_pred             EEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          347 EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       347 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      .....+.....++...+  +.+.+.++++|+.|+.|++|++..+.
T Consensus       254 l~~~~ld~~~~~L~p~~--D~~tg~l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        254 LVTMSIDNASAPLIPHY--DESTGLIYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             eEEEEecCCccceEEee--eCCCCCEEEEEECCCeEEEEEccCCc
Confidence            33333333323322222  34455689999999999999997664

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=1.8e-26  Score=235.17  Aligned_cols=251  Identities=16%  Similarity=0.232  Sum_probs=193.3

Q ss_pred             CCeEEEEECCCCcEEEEE-----ecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC----e----EEEEEecCCce
Q 016224          128 CKFLHSWTVGDGFKLLTQ-----LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG----Q----CAGVINLGGEV  194 (393)
Q Consensus       128 dg~i~vwd~~~~~~~~~~-----l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~----~----~~~~~~~~~~~  194 (393)
                      +|.+++|+..+- +....     +..|...|++++|+|++++||+|+.|++|+||++.+.    .    ....+.....+
T Consensus       457 ~gl~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v  535 (793)
T PLN00181        457 EGLCKYLSFSKL-RVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKL  535 (793)
T ss_pred             hhhhhhhcccce-EEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCce
Confidence            677788887654 33333     3458999999999999999999999999999997542    1    12222333333


Q ss_pred             EEEE--e-CCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeC-C--EEEEEeCCCcEEEEEeccCCccccCc
Q 016224          195 GCMI--S-EGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGN-D--LLFAGTQDGAILAWKFNVTTNCFEPA  266 (393)
Q Consensus       195 ~~~~--~-~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~-~--~l~~~~~dg~I~vwd~~~~~~~~~~~  266 (393)
                      ..+.  + .+.+|+++ .|+.|++||+.+++.+ .+.+|...|++++|++ +  +|++|+.|+.|++||+++.    ...
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~----~~~  611 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG----VSI  611 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC----cEE
Confidence            3332  2 35566654 8999999999988766 7788999999999986 3  8999999999999999876    334


Q ss_pred             eeecCceeeEEEEEEc---CCEEEEecCCCcEEEeeCCCcc-eeeEeccCccceEEEEEc-CCEEEEEeCCCcEEEEEcC
Q 016224          267 ASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQ-CIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFAT  341 (393)
Q Consensus       267 ~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~  341 (393)
                      ..+..+ ..+.++.|.   +.+|++|+.|+.|++||+++.+ .+..+.+|...|.++.|. +.+|++++.|++|+|||++
T Consensus       612 ~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~  690 (793)
T PLN00181        612 GTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLS  690 (793)
T ss_pred             EEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCC
Confidence            444433 567788773   6799999999999999998765 577888999999999997 7799999999999999997


Q ss_pred             CC------cceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          342 DS------GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       342 ~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      ..      ..+..+..|..  .+..+.|++++.   +|++|+.|+.|++|+...
T Consensus       691 ~~~~~~~~~~l~~~~gh~~--~i~~v~~s~~~~---~lasgs~D~~v~iw~~~~  739 (793)
T PLN00181        691 MSISGINETPLHSFMGHTN--VKNFVGLSVSDG---YIATGSETNEVFVYHKAF  739 (793)
T ss_pred             CCccccCCcceEEEcCCCC--CeeEEEEcCCCC---EEEEEeCCCEEEEEECCC
Confidence            43      33444444443  466778877654   999999999999999753

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=1.9e-26  Score=189.66  Aligned_cols=272  Identities=19%  Similarity=0.320  Sum_probs=228.3

Q ss_pred             eeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEE--EecCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECCC
Q 016224          107 VIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLT--QLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCAS  181 (393)
Q Consensus       107 ~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~--~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~~  181 (393)
                      .|...+..++|+.+  .+++|+.|+++.+|+++.. +.+.  ...+|.+.|-.++|+| ..++|++++.|.+|++||++.
T Consensus        18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~   96 (313)
T KOG1407|consen   18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS   96 (313)
T ss_pred             hhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence            35568888999866  4668999999999999866 4443  4578999999999977 568999999999999999999


Q ss_pred             CeEEEEEecCCc--eEEEEeCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEe
Q 016224          182 GQCAGVINLGGE--VGCMISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF  256 (393)
Q Consensus       182 ~~~~~~~~~~~~--~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~  256 (393)
                      ++++..+.....  ...+.+++.+++++ .|..|.+.|.++.+..........+..+.|+.+  +|+.....|.|.|...
T Consensus        97 ~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsy  176 (313)
T KOG1407|consen   97 GKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSY  176 (313)
T ss_pred             CcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEec
Confidence            999998876543  45566888888876 788999999999998877777778888888644  7777777899999987


Q ss_pred             ccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCC
Q 016224          257 NVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD  332 (393)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d  332 (393)
                      ..-    +++..++.|...+.|+.++  |++||+|+.|-.+.+||+...-+++.+.-+.-+|..|.|+  +++||++|+|
T Consensus       177 psL----kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSED  252 (313)
T KOG1407|consen  177 PSL----KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASED  252 (313)
T ss_pred             ccc----ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCcc
Confidence            644    8889999999999999987  6799999999999999999999999999999999999998  8999999999


Q ss_pred             CcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC---------CeEEEEeCCc
Q 016224          333 KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND---------NSVRFYDLPS  389 (393)
Q Consensus       333 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d---------g~I~iwd~~s  389 (393)
                      -.|-|=++.++.++..+..   ..+...++|+|..+   +|+-++.|         |.|++|-+++
T Consensus       253 h~IDIA~vetGd~~~eI~~---~~~t~tVAWHPk~~---LLAyA~ddk~~d~~reag~vKiFG~~~  312 (313)
T KOG1407|consen  253 HFIDIAEVETGDRVWEIPC---EGPTFTVAWHPKRP---LLAYACDDKDGDSNREAGTVKIFGLSN  312 (313)
T ss_pred             ceEEeEecccCCeEEEeec---cCCceeEEecCCCc---eeeEEecCCCCccccccceeEEecCCC
Confidence            9999999999988776654   34578899999877   88777654         6788887664

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=2.2e-26  Score=218.53  Aligned_cols=211  Identities=16%  Similarity=0.251  Sum_probs=162.8

Q ss_pred             EecCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCcee
Q 016224          145 QLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL  223 (393)
Q Consensus       145 ~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~  223 (393)
                      .+.+|.+.|++++|+| ++++|++|+.|++|++||+.++......                              .....
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~------------------------------~~~l~  119 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI------------------------------SDPIV  119 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc------------------------------CcceE
Confidence            4779999999999999 8899999999999999999765321100                              01122


Q ss_pred             eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEe
Q 016224          224 SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVW  298 (393)
Q Consensus       224 ~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iw  298 (393)
                      .+.+|...|.+++|+|+   +|++++.|+.|++||+.++    +....+..|...|.+++|+  +++|++++.|++|++|
T Consensus       120 ~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg----~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIw  195 (493)
T PTZ00421        120 HLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG----KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNII  195 (493)
T ss_pred             EecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC----eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEE
Confidence            56789999999999985   8999999999999999876    4566778899999999986  6689999999999999


Q ss_pred             eCCCcceeeEeccCccce-EEEEEc--CCEEEEEe----CCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCc
Q 016224          299 NLETLQCIQTLTEHTSVV-MSLLCW--DQFLLSCS----LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP  371 (393)
Q Consensus       299 d~~~~~~~~~~~~~~~~v-~~l~~~--~~~l~s~s----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  371 (393)
                      |+++++.+.++.+|...+ ..+.|.  +..+++++    .|+.|++||+++...............+....|.++..   
T Consensus       196 D~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~---  272 (493)
T PTZ00421        196 DPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTN---  272 (493)
T ss_pred             ECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCC---
Confidence            999999999999887654 345555  45666554    47899999998765443333323333344555655544   


Q ss_pred             EEEEEe-CCCeEEEEeCCceee
Q 016224          372 VLLCSC-NDNSVRFYDLPSVII  392 (393)
Q Consensus       372 ~l~s~s-~dg~I~iwd~~s~~l  392 (393)
                      +|++++ .|+.|++||+.++++
T Consensus       273 ~L~lggkgDg~Iriwdl~~~~~  294 (493)
T PTZ00421        273 LLYIGSKGEGNIRCFELMNERL  294 (493)
T ss_pred             EEEEEEeCCCeEEEEEeeCCce
Confidence            777776 599999999998764

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=5.9e-26  Score=187.74  Aligned_cols=237  Identities=25%  Similarity=0.400  Sum_probs=194.4

Q ss_pred             EEEEEecCCcCCEEEEEecCC-CCEEEEEeCCCcEEEEECCCC---eEEEEEe--cCCceEE--EEeCCCEEEEE-cCCe
Q 016224          141 KLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASG---QCAGVIN--LGGEVGC--MISEGPWIFIG-VTNF  211 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~-~~~l~s~s~dg~v~iwd~~~~---~~~~~~~--~~~~~~~--~~~~~~~l~~~-~~~~  211 (393)
                      ..++.+++|++.|..++|+|. |..|||++.|..|++|+...+   .+...+.  +...+..  +.+.+++|+++ .|.+
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t   84 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT   84 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence            466789999999999999998 889999999999999999853   3443332  2233433  44689999876 8999


Q ss_pred             EEEEECCCCcee---eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC--C
Q 016224          212 VKAWNTQTNTDL---SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--N  284 (393)
Q Consensus       212 i~v~d~~~~~~~---~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~  284 (393)
                      +.||.-..++..   .+.+|..+|.+++|+++  +||+++.|.+|-||.+.. ...++....+..|...|..+.|.|  +
T Consensus        85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de-ddEfec~aVL~~HtqDVK~V~WHPt~d  163 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE-DDEFECIAVLQEHTQDVKHVIWHPTED  163 (312)
T ss_pred             EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC-CCcEEEEeeeccccccccEEEEcCCcc
Confidence            999988766533   88999999999999987  999999999999999984 445788899999999999999998  6


Q ss_pred             EEEEecCCCcEEEeeCC---CcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEE
Q 016224          285 KLYSGSMDNSIRVWNLE---TLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVL  359 (393)
Q Consensus       285 ~l~sg~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  359 (393)
                      +|++++.|.+|++|+-.   ..++++++.+|...|.+++|+  |..|++++.|++|+||-....      ....+...+.
T Consensus       164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~------~~~~~sr~~Y  237 (312)
T KOG0645|consen  164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD------LSGMHSRALY  237 (312)
T ss_pred             eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC------cchhcccceE
Confidence            89999999999999876   467899999999999999998  779999999999999976421      1122223466


Q ss_pred             EEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          360 ALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       360 ~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      .+.|. + .   .|++++.|+.|++|.-..
T Consensus       238 ~v~W~-~-~---~IaS~ggD~~i~lf~~s~  262 (312)
T KOG0645|consen  238 DVPWD-N-G---VIASGGGDDAIRLFKESD  262 (312)
T ss_pred             eeeec-c-c---ceEeccCCCEEEEEEecC
Confidence            67775 2 2   799999999999997653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=4e-26  Score=203.91  Aligned_cols=240  Identities=28%  Similarity=0.444  Sum_probs=195.1

Q ss_pred             EEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-ce--EEEEeCCCEEEEE-cCCeEEEEECC
Q 016224          143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG-EV--GCMISEGPWIFIG-VTNFVKAWNTQ  218 (393)
Q Consensus       143 ~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~--~~~~~~~~~l~~~-~~~~i~v~d~~  218 (393)
                      ++++++|..+|++++|+|++++|++++.||.|++|++.+++....+..+. .+  ..+.++++.++++ .++.|++|++.
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            34677999999999999999999999999999999999887666665543 33  2233566566655 68999999999


Q ss_pred             CCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC--CEEEEecCCC
Q 016224          219 TNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDN  293 (393)
Q Consensus       219 ~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg  293 (393)
                      .++.. .+..|...+.++.|+++  ++++++.++.|.+||+...    +....+..|...+.++.+++  .++++++.|+
T Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  157 (289)
T cd00200          82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG----KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG  157 (289)
T ss_pred             cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc----EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCC
Confidence            86555 67788889999999986  7777777999999999865    44566667888899999875  5677777799


Q ss_pred             cEEEeeCCCcceeeEeccCccceEEEEEcC--CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCc
Q 016224          294 SIRVWNLETLQCIQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP  371 (393)
Q Consensus       294 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  371 (393)
                      .|++||+++++.+..+..|...+.++.+.+  +.+++++.|+.|++||++.......+..+..  .+..+.|.++..   
T Consensus       158 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~---  232 (289)
T cd00200         158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSPDGY---  232 (289)
T ss_pred             cEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ceEEEEEcCCCc---
Confidence            999999999999999999999999999984  4899999999999999987666555544433  588899988733   


Q ss_pred             EEEEEeCCCeEEEEeCCcee
Q 016224          372 VLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       372 ~l~s~s~dg~I~iwd~~s~~  391 (393)
                      ++++++.||.|++|++.+++
T Consensus       233 ~~~~~~~~~~i~i~~~~~~~  252 (289)
T cd00200         233 LLASGSEDGTIRVWDLRTGE  252 (289)
T ss_pred             EEEEEcCCCcEEEEEcCCce
Confidence            78888889999999998654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=7.2e-26  Score=210.33  Aligned_cols=273  Identities=19%  Similarity=0.309  Sum_probs=230.6

Q ss_pred             cceeecceEEeeEecCcEEEec-CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 016224          105 RAVIKTDILCRNWVQGNCMYGE-KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ  183 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~~~~g~-~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~  183 (393)
                      ...|..+|..++++.++.++++ ..+.|++|+..+. ++++++..-  .+.+..|-|.++++++|...|.+.++|+.+..
T Consensus       369 ~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~-kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~  445 (888)
T KOG0306|consen  369 IGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTL-KCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASAS  445 (888)
T ss_pred             eccchhheeEEEeecCceeeeecCCCcEEEEEccCc-ceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence            4568889999999999877655 5679999999998 899998744  89999999999999999999999999999998


Q ss_pred             EEEEEecCCce-E--EEEeCCCEEE-EEcCCeEEEEECCCCc--------ee-----eecCCCCcEEEEEEeCC--EEEE
Q 016224          184 CAGVINLGGEV-G--CMISEGPWIF-IGVTNFVKAWNTQTNT--------DL-----SLSGPVGQVYAMAVGND--LLFA  244 (393)
Q Consensus       184 ~~~~~~~~~~~-~--~~~~~~~~l~-~~~~~~i~v~d~~~~~--------~~-----~~~~~~~~v~~l~~~~~--~l~~  244 (393)
                      .+.+++.+... -  ...+++..++ ++.|.+|++||..--.        .+     ........|.|+.++||  +|++
T Consensus       446 l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV  525 (888)
T KOG0306|consen  446 LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV  525 (888)
T ss_pred             hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE
Confidence            88888755443 2  3345665554 5699999999964211        11     23345678999999998  9999


Q ss_pred             EeCCCcEEEEEeccCCccccCceeecCceeeEEEEEE--cCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc
Q 016224          245 GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW  322 (393)
Q Consensus       245 ~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~  322 (393)
                      +--|.+|+||-+.+-    +....+.+|.-+|.++..  ++++++||+.|..|+||-+.-|.|-+++-+|...|+++.|-
T Consensus       526 sLLdnTVkVyflDtl----KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~  601 (888)
T KOG0306|consen  526 SLLDNTVKVYFLDTL----KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL  601 (888)
T ss_pred             EeccCeEEEEEecce----eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc
Confidence            999999999998876    667788999999988876  56799999999999999999999999999999999999998


Q ss_pred             C--CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          323 D--QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       323 ~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      +  .++.+++.|+.|+-||-...+.++.+.+|..+  +.+++.+|++.   +++++|.|.+|++|+-..
T Consensus       602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e--v~cLav~~~G~---~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE--VWCLAVSPNGS---FVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             ccceeEEEecCcceEEeechhhhhhheeeccchhe--eeeeEEcCCCC---eEEeccCCceeEeeeccC
Confidence            5  47999999999999999888888888888877  77777777665   999999999999998654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=1.5e-27  Score=211.39  Aligned_cols=245  Identities=21%  Similarity=0.278  Sum_probs=206.5

Q ss_pred             EEEEEecCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECCC-CeEEEEEecCCce-EE--EEeC-CCEEEEEcCCeEEE
Q 016224          141 KLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCAS-GQCAGVINLGGEV-GC--MISE-GPWIFIGVTNFVKA  214 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~-~~--~~~~-~~~l~~~~~~~i~v  214 (393)
                      +.++++.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++..+... ..  +..+ .++|.++.|+.|++
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence            57789999999999999999 889999999999999999876 8899999877543 22  3334 44666789999999


Q ss_pred             EECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEE--cCCEEEEe
Q 016224          215 WNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSG  289 (393)
Q Consensus       215 ~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg  289 (393)
                      ||+++|+..........++++.|+|+   .|++|+.|+.|+.||++++    +.++....|-+.|..+.|  ++.++++.
T Consensus       285 wDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~----kvvqeYd~hLg~i~~i~F~~~g~rFiss  360 (503)
T KOG0282|consen  285 WDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG----KVVQEYDRHLGAILDITFVDEGRRFISS  360 (503)
T ss_pred             eccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccch----HHHHHHHhhhhheeeeEEccCCceEeee
Confidence            99999999987777888999999887   8999999999999999998    678888889999999998  46799999


Q ss_pred             cCCCcEEEeeCCCcceeeEe---ccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcc---eEEEEeecCCccEEEEEe
Q 016224          290 SMDNSIRVWNLETLQCIQTL---TEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGN---LEVTYTHNEEHGVLALCG  363 (393)
Q Consensus       290 ~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~  363 (393)
                      +.|++++||+.+..-+++.+   ..|.-+...+...+.+++.-+.|+.|.||.+...-+   ...+.+|........+.|
T Consensus       361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f  440 (503)
T KOG0282|consen  361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF  440 (503)
T ss_pred             ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence            99999999999887665544   346666666666688999999999999998754332   345567777777888999


Q ss_pred             eeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          364 MPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       364 ~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      +||+.   +|++|+.||.+.+||..+.++
T Consensus       441 SpDG~---~l~SGdsdG~v~~wdwkt~kl  466 (503)
T KOG0282|consen  441 SPDGR---TLCSGDSDGKVNFWDWKTTKL  466 (503)
T ss_pred             cCCCC---eEEeecCCccEEEeechhhhh
Confidence            99877   999999999999999988654

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=3.7e-26  Score=192.24  Aligned_cols=276  Identities=16%  Similarity=0.255  Sum_probs=215.3

Q ss_pred             cceeecceEEeeEecCcEE--EecCCCeEEEEECCC-----------------CcEEEEEecCCcCCEEEEEecCCCCEE
Q 016224          105 RAVIKTDILCRNWVQGNCM--YGEKCKFLHSWTVGD-----------------GFKLLTQLEGHQKVVSGITLPSGSDKL  165 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~~~--~g~~dg~i~vwd~~~-----------------~~~~~~~l~~h~~~I~~i~~s~~~~~l  165 (393)
                      .+.|+.++.|.+|++++.+  +|+.|..|+|.|++.                 ....+++|-.|.++|+++.|+|....|
T Consensus       108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL  187 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL  187 (430)
T ss_pred             EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence            4679999999999988654  699999999999871                 124678899999999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCeEEE---EEecCCceEEE--EeCCCEEEEEcCC-eEEEEECCCCcee----eecCCCCcEEEE
Q 016224          166 YSGSKDETVRVWDCASGQCAG---VINLGGEVGCM--ISEGPWIFIGVTN-FVKAWNTQTNTDL----SLSGPVGQVYAM  235 (393)
Q Consensus       166 ~s~s~dg~v~iwd~~~~~~~~---~~~~~~~~~~~--~~~~~~l~~~~~~-~i~v~d~~~~~~~----~~~~~~~~v~~l  235 (393)
                      ++|+.|++|+++|+.+....+   .++...++.++  .+.|.+|++|.+. .+++||+.+-+..    .-.+|.+.|+++
T Consensus       188 iS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V  267 (430)
T KOG0640|consen  188 ISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQV  267 (430)
T ss_pred             EeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEE
Confidence            999999999999997654333   33444445444  4799999999776 9999999998876    345788999999


Q ss_pred             EEeCC--EEEEEeCCCcEEEEEeccCCccccCceeec-Cce-eeEEEEEE--cCCEEEEecCCCcEEEeeCCCcceeeEe
Q 016224          236 AVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK-GHS-LAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTL  309 (393)
Q Consensus       236 ~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~-~~~-~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~  309 (393)
                      .+++.  +.++++.||.|++||--+.    +++.++. .|. ..|++..|  +++++++.+.|..+++|.+.+++++.++
T Consensus       268 ~Ys~t~~lYvTaSkDG~IklwDGVS~----rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y  343 (430)
T KOG0640|consen  268 RYSSTGSLYVTASKDGAIKLWDGVSN----RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY  343 (430)
T ss_pred             EecCCccEEEEeccCCcEEeeccccH----HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence            99987  9999999999999997765    4444443 343 45677767  4779999999999999999999999998


Q ss_pred             ccCcc-----ceEEEEEc--CCEEEEEeC-CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCe
Q 016224          310 TEHTS-----VVMSLLCW--DQFLLSCSL-DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNS  381 (393)
Q Consensus       310 ~~~~~-----~v~~l~~~--~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~  381 (393)
                      .+-..     --+...|.  .+|++.-.+ .+.+.-||.++......+. ..+...+..+..+|..+   .+++++.|..
T Consensus       344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s-lgHn~a~R~i~HSP~~p---~FmTcsdD~r  419 (430)
T KOG0640|consen  344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS-LGHNGAVRWIVHSPVEP---AFMTCSDDFR  419 (430)
T ss_pred             ecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc-cCCCCCceEEEeCCCCC---ceeeecccce
Confidence            75421     11233344  556665443 5789999999877654433 34444588888888776   8999999999


Q ss_pred             EEEEeCC
Q 016224          382 VRFYDLP  388 (393)
Q Consensus       382 I~iwd~~  388 (393)
                      +++|--+
T Consensus       420 aRFWyrr  426 (430)
T KOG0640|consen  420 ARFWYRR  426 (430)
T ss_pred             eeeeeec
Confidence            9999643

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=4.6e-27  Score=198.80  Aligned_cols=240  Identities=19%  Similarity=0.340  Sum_probs=200.9

Q ss_pred             eecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEe--------cCCcCCEEEEEecCCCCEEEEEeCCCcEEEE
Q 016224          108 IKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQL--------EGHQKVVSGITLPSGSDKLYSGSKDETVRVW  177 (393)
Q Consensus       108 ~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l--------~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iw  177 (393)
                      .+..+-|..|+|++  +++|+.||.|.+||..+| ++.+.+        .-|..+|.||.|+.|..+||+|+.||.|++|
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~G-KlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTG-KLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccc-hhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            34567899999985  557999999999999988 554433        3578999999999999999999999999999


Q ss_pred             ECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEE
Q 016224          178 DCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK  255 (393)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd  255 (393)
                      .+++|+|++.|.                                    ..|...|+++.|+.|  .+++++.|.++++.-
T Consensus       291 ri~tG~ClRrFd------------------------------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHG  334 (508)
T KOG0275|consen  291 RIETGQCLRRFD------------------------------------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHG  334 (508)
T ss_pred             EEecchHHHHhh------------------------------------hhhccCeeEEEEccCcchhhcccccceEEEec
Confidence            999999987764                                    468889999999988  899999999999999


Q ss_pred             eccCCccccCceeecCceeeEEEEEE--cCCEEEEecCCCcEEEeeCCCcceeeEecc--CccceEEEEEc---CCEEEE
Q 016224          256 FNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLTE--HTSVVMSLLCW---DQFLLS  328 (393)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~---~~~l~s  328 (393)
                      +.++    +.++.+.+|...|....|  +|+++++++.||+|++|+..+.+++.+|+.  ...+|.++..-   +..+++
T Consensus       335 lKSG----K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV  410 (508)
T KOG0275|consen  335 LKSG----KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIV  410 (508)
T ss_pred             cccc----hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEE
Confidence            8887    778999999999988877  478999999999999999999999999974  44567777665   568999


Q ss_pred             EeCCCcEEEEEcCCCcceEEEEeecC-CccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          329 CSLDKTIKVWFATDSGNLEVTYTHNE-EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       329 ~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      +...++|.|-++. ++.+..+..... .....+.+.+|.++   ++++.++|+.++.|.+.+|+|
T Consensus       411 CNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGe---wiYcigED~vlYCF~~~sG~L  471 (508)
T KOG0275|consen  411 CNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGE---WIYCIGEDGVLYCFSVLSGKL  471 (508)
T ss_pred             EcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCc---EEEEEccCcEEEEEEeecCce
Confidence            9999999999984 555555544333 23355566666655   999999999999999998875

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.6e-26  Score=215.51  Aligned_cols=237  Identities=16%  Similarity=0.244  Sum_probs=191.4

Q ss_pred             eeecceEEeeEecCc--EEEecCCCeEEEEECCC--------------------------------C-------------
Q 016224          107 VIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGD--------------------------------G-------------  139 (393)
Q Consensus       107 ~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~--------------------------------~-------------  139 (393)
                      .|++.|.|+.|++++  +++|+.|+.|+||.+..                                .             
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            788999999999885  44799999999998765                                0             


Q ss_pred             --------------cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEE
Q 016224          140 --------------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIF  205 (393)
Q Consensus       140 --------------~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~  205 (393)
                                    .+++..+.||.+.|.+|.|+.+ ++|+|++.|.+|+||++...+|+..|                 
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F-----------------  406 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF-----------------  406 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-----------------
Confidence                          0345667799999999999965 58999999999999999998888776                 


Q ss_pred             EEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEE-
Q 016224          206 IGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV-  281 (393)
Q Consensus       206 ~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~-  281 (393)
                                           .|...|+|++|+|.   +|++|+-|++|+||++....     +.....-..-|+++++ 
T Consensus       407 ---------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~-----Vv~W~Dl~~lITAvcy~  460 (712)
T KOG0283|consen  407 ---------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK-----VVDWNDLRDLITAVCYS  460 (712)
T ss_pred             ---------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCe-----eEeehhhhhhheeEEec
Confidence                                 58889999999985   99999999999999998752     2222223356677666 


Q ss_pred             -cCCEEEEecCCCcEEEeeCCCcceeeEeccC--------ccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcceEEE
Q 016224          282 -GANKLYSGSMDNSIRVWNLETLQCIQTLTEH--------TSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVT  349 (393)
Q Consensus       282 -~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--------~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~  349 (393)
                       +|+..+.|+.+|.+++|+.+..+....+..+        ...|+.+.|.   .+.+++.+.|..|+|||.++...+..+
T Consensus       461 PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~Kf  540 (712)
T KOG0283|consen  461 PDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKF  540 (712)
T ss_pred             cCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhh
Confidence             5789999999999999999988776655321        2279999998   346888899999999999888888888


Q ss_pred             EeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          350 YTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       350 ~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      .+......-....|+.++.   +|+++++|..|++|+++..
T Consensus       541 KG~~n~~SQ~~Asfs~Dgk---~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  541 KGFRNTSSQISASFSSDGK---HIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             cccccCCcceeeeEccCCC---EEEEeecCceEEEEeCCCC
Confidence            7766555555666766544   9999999999999998543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=1.7e-25  Score=192.05  Aligned_cols=235  Identities=19%  Similarity=0.251  Sum_probs=191.6

Q ss_pred             cccccceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEE
Q 016224          101 NINNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (393)
Q Consensus       101 ~~~~~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd  178 (393)
                      .+-..+.|+..|+|+.|+.++  +++|..+|.|+||...++ .....+...-..|.-+.|+|-+..|+.|+.||.|.+|.
T Consensus        98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg-~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~  176 (399)
T KOG0296|consen   98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG-GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQ  176 (399)
T ss_pred             ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC-ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEE
Confidence            345567899999999999875  447999999999999998 56666666778899999999999999999999999999


Q ss_pred             CCCCeEEEEEecCCc---eEEEEeCCCEEEEE-cCCeEEEEECCCCcee-eec---------------------------
Q 016224          179 CASGQCAGVINLGGE---VGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLS---------------------------  226 (393)
Q Consensus       179 ~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~---------------------------  226 (393)
                      +.++...+.+..+..   ...+.++|+.++++ .|++|++||+.++..+ .+.                           
T Consensus       177 ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~  256 (399)
T KOG0296|consen  177 IPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV  256 (399)
T ss_pred             CCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc
Confidence            999777777776543   35677899999988 7889999999988743 111                           


Q ss_pred             ------------------------CCCCcEEEEEEeC---C--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEE
Q 016224          227 ------------------------GPVGQVYAMAVGN---D--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVV  277 (393)
Q Consensus       227 ------------------------~~~~~v~~l~~~~---~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~  277 (393)
                                              .+...+.++.+.|   .  +.|+|+-||+|.|||+....     .+..-.|...|.
T Consensus       257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~-----~R~~c~he~~V~  331 (399)
T KOG0296|consen  257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST-----LRHICEHEDGVT  331 (399)
T ss_pred             EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch-----hheeccCCCceE
Confidence                                    1111122222222   2  78889999999999998753     344456888899


Q ss_pred             EEEEcC-CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 016224          278 SLVVGA-NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFAT  341 (393)
Q Consensus       278 ~l~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~  341 (393)
                      .+.|.+ .+|++++.+|.|++||.++|+++.++.+|...|.+++.+  .++++++|.|++.+||+..
T Consensus       332 ~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  332 KLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            999987 689999999999999999999999999999999999988  5799999999999999864

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=9.5e-27  Score=190.31  Aligned_cols=275  Identities=15%  Similarity=0.238  Sum_probs=221.7

Q ss_pred             cceeecceEEeeEe---cCcE--EEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 016224          105 RAVIKTDILCRNWV---QGNC--MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC  179 (393)
Q Consensus       105 ~~~~~~~i~c~~~~---~~~~--~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~  179 (393)
                      ...|..+|..++|+   +++.  ++++.|+.-.+-+-+++ .-+.++.+|+++|++..+..+..+-|+++.|-+-+|||.
T Consensus        10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg-dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG-DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA   88 (334)
T ss_pred             EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC-CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence            44577799999998   4443  36999999999888898 899999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCceEEEE--eCCCEEEE-EcCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC--EEEEEeCCCcEE
Q 016224          180 ASGQCAGVINLGGEVGCMI--SEGPWIFI-GVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAIL  252 (393)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~  252 (393)
                      -+|..+..+.+..-+..+.  .+...|++ |.+..+++||++..+..  .+.+|.+.|..+.|...  .+++++.|++|+
T Consensus        89 ~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVR  168 (334)
T KOG0278|consen   89 VTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVR  168 (334)
T ss_pred             hhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceE
Confidence            9999999999887776554  45566665 48889999999876644  78899999999998544  788889999999


Q ss_pred             EEEeccCCccccCceeecCceeeEEEEEEc-CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEE
Q 016224          253 AWKFNVTTNCFEPAASLKGHSLAVVSLVVG-ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSC  329 (393)
Q Consensus       253 vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~  329 (393)
                      +||.+++.    .++.+. ...+|.++..+ ...+++-...+.|.+||..+..+++.++. ...|.+...+  ...+++|
T Consensus       169 LWD~rTgt----~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaG  242 (334)
T KOG0278|consen  169 LWDHRTGT----EVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAG  242 (334)
T ss_pred             EEEeccCc----EEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEec
Confidence            99999984    334433 34556666665 23455556678999999999999988874 3345555555  4689999


Q ss_pred             eCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          330 SLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       330 s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      +.|..++.||..+++.+... ...+..+|.++.|+|++.   ..++||.||+|+||.+..+
T Consensus       243 ged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE---~yAsGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  243 GEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGE---LYASGSEDGTIRLWQTTPG  299 (334)
T ss_pred             CcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCc---eeeccCCCceEEEEEecCC
Confidence            99999999999999887764 233445699999999887   8999999999999998654

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=5.4e-26  Score=214.41  Aligned_cols=240  Identities=21%  Similarity=0.379  Sum_probs=204.5

Q ss_pred             EEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CceEE--EEeCCCEEEEE-cCCeEEEEECCC
Q 016224          144 TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-GEVGC--MISEGPWIFIG-VTNFVKAWNTQT  219 (393)
Q Consensus       144 ~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~~~~--~~~~~~~l~~~-~~~~i~v~d~~~  219 (393)
                      ..+...+..|..++|+|....++++-..|.|++||++.+.++..|..+ +++..  +.+...++++| .|-.|++|+..+
T Consensus         3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~   82 (1202)
T KOG0292|consen    3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT   82 (1202)
T ss_pred             chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence            345667788999999999999999999999999999999999888654 45544  44677787776 555999999999


Q ss_pred             Ccee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC--CEEEEecCCCc
Q 016224          220 NTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNS  294 (393)
Q Consensus       220 ~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~  294 (393)
                      .+.+ ++.+|.+.|..+.|++.  .+++++.|.+|+||+..+.    ..+..+.+|...|+|..|.+  +.+++++-|.+
T Consensus        83 rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr----~~iavltGHnHYVMcAqFhptEDlIVSaSLDQT  158 (1202)
T KOG0292|consen   83 RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR----KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQT  158 (1202)
T ss_pred             ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC----ceEEEEecCceEEEeeccCCccceEEEecccce
Confidence            9988 99999999999999998  9999999999999999987    77889999999999999986  58999999999


Q ss_pred             EEEeeCCCcc-----------------------------eeeEeccCccceEEEEEcC--CEEEEEeCCCcEEEEEcCCC
Q 016224          295 IRVWNLETLQ-----------------------------CIQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDS  343 (393)
Q Consensus       295 i~iwd~~~~~-----------------------------~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~  343 (393)
                      |||||+...+                             ..+.+.+|...|+-++|++  ..|++|+.|..|++|.+.+.
T Consensus       159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet  238 (1202)
T KOG0292|consen  159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET  238 (1202)
T ss_pred             EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc
Confidence            9999985211                             1234678999999999997  68999999999999999877


Q ss_pred             cceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          344 GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       344 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      +..+.-.-..+...|.++.|+|..+   +|++.|+|++|+|||+..-
T Consensus       239 KaWEvDtcrgH~nnVssvlfhp~q~---lIlSnsEDksirVwDm~kR  282 (1202)
T KOG0292|consen  239 KAWEVDTCRGHYNNVSSVLFHPHQD---LILSNSEDKSIRVWDMTKR  282 (1202)
T ss_pred             cceeehhhhcccCCcceEEecCccc---eeEecCCCccEEEEecccc
Confidence            7655544445556699999998766   9999999999999999753

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4.2e-24  Score=180.74  Aligned_cols=245  Identities=14%  Similarity=0.184  Sum_probs=199.4

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC---CceEEEEe-CCCEEEEE--cCCeEEE
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG---GEVGCMIS-EGPWIFIG--VTNFVKA  214 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~---~~~~~~~~-~~~~l~~~--~~~~i~v  214 (393)
                      ++.+.+..-...|.+|.|+++|.+|++++.|.+++|||..+++.++++...   ....++.. +...+.++  .|.+|+.
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence            455667777889999999999999999999999999999999999988765   33455554 44444444  4789999


Q ss_pred             EECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecC
Q 016224          215 WNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSM  291 (393)
Q Consensus       215 ~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~  291 (393)
                      .++.+++.+ .+.+|...|.+|+.+|-  .+++++.|++|++||++..    ++...+.....++.++.+.|-++|++..
T Consensus        85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~----~cqg~l~~~~~pi~AfDp~GLifA~~~~  160 (311)
T KOG1446|consen   85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK----KCQGLLNLSGRPIAAFDPEGLIFALANG  160 (311)
T ss_pred             EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC----CCceEEecCCCcceeECCCCcEEEEecC
Confidence            999999988 78899999999999985  9999999999999999976    4455555556677777777888999988


Q ss_pred             CCcEEEeeCCCc--ceeeEecc---CccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCc-cEEEEEe
Q 016224          292 DNSIRVWNLETL--QCIQTLTE---HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH-GVLALCG  363 (393)
Q Consensus       292 dg~i~iwd~~~~--~~~~~~~~---~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~  363 (393)
                      ...|++||++..  .+..++..   .....+.+.|+  |++|+.+...+.+++.|.-++..+..+..+.... --...+|
T Consensus       161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f  240 (311)
T KOG1446|consen  161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF  240 (311)
T ss_pred             CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence            889999999863  44555543   36677889998  8899999999999999999888777776655443 2356778


Q ss_pred             eeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          364 MPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       364 ~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      .|++.   ++++|+.||+|.+|++++++.
T Consensus       241 tPds~---Fvl~gs~dg~i~vw~~~tg~~  266 (311)
T KOG1446|consen  241 TPDSK---FVLSGSDDGTIHVWNLETGKK  266 (311)
T ss_pred             CCCCc---EEEEecCCCcEEEEEcCCCcE
Confidence            88877   999999999999999998863

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=4e-25  Score=203.85  Aligned_cols=266  Identities=21%  Similarity=0.322  Sum_probs=215.3

Q ss_pred             eeecceEEeeEecCc-EEEecCCCeEEEEECCCC-cEEEEEecCCcCCEEE-EEecC-CCCEEEEEeCCCcEEEEECCCC
Q 016224          107 VIKTDILCRNWVQGN-CMYGEKCKFLHSWTVGDG-FKLLTQLEGHQKVVSG-ITLPS-GSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       107 ~~~~~i~c~~~~~~~-~~~g~~dg~i~vwd~~~~-~~~~~~l~~h~~~I~~-i~~s~-~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      .|+.+|..+...++. ++.++.||++++|+-..+ +-..+.+.+|.+-|.. +++.+ ++-+|++|+.|.+|.+|.....
T Consensus        12 gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~   91 (745)
T KOG0301|consen   12 GHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA   91 (745)
T ss_pred             cCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC
Confidence            466666666666665 667999999999997543 3334567889888887 88875 5557999999999999999999


Q ss_pred             eEEEEEecCCceEEEEe---CCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEecc
Q 016224          183 QCAGVINLGGEVGCMIS---EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNV  258 (393)
Q Consensus       183 ~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~  258 (393)
                      .....+..+..-.|..+   ++.++..+.|.++++|....-.. .+.+|...|.++..-|+ .+++|+.|.+|++|.-. 
T Consensus        92 ~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~-~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~-  169 (745)
T KOG0301|consen   92 EPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVY-SLQGHTASVWAVASLPENTYVTGSADKTIKLWKGG-  169 (745)
T ss_pred             CchhhhhccccceeeeecCCcCceEecccccceEEecchhhhc-ccCCcchheeeeeecCCCcEEeccCcceeeeccCC-
Confidence            99999887766555443   44445556999999998754332 48999999999998777 99999999999999652 


Q ss_pred             CCccccCceeecCceeeEEEEEEc-CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcE
Q 016224          259 TTNCFEPAASLKGHSLAVVSLVVG-ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTI  335 (393)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i  335 (393)
                           +.+..+.+|...|..+++- ...|++++.||.|++|++ +++++.++.+|+..|.++...  ++.++++++|+++
T Consensus       170 -----~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtl  243 (745)
T KOG0301|consen  170 -----TLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTL  243 (745)
T ss_pred             -----chhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceE
Confidence                 5578899999999999985 458999999999999999 799999999999999999854  6799999999999


Q ss_pred             EEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          336 KVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       336 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      +||+..  +..+.+. +.. ..+.++++.++++    |++|++||.||||-..
T Consensus       244 riW~~~--e~~q~I~-lPt-tsiWsa~~L~NgD----Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  244 RIWKKD--ECVQVIT-LPT-TSIWSAKVLLNGD----IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             EEeecC--ceEEEEe-cCc-cceEEEEEeeCCC----EEEeccCceEEEEEec
Confidence            999875  3333333 222 3588888888876    9999999999999875

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=6.6e-25  Score=184.13  Aligned_cols=259  Identities=18%  Similarity=0.234  Sum_probs=202.0

Q ss_pred             eecceEEeeEec--CcEE-EecCCCeEEEEECCC-CcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 016224          108 IKTDILCRNWVQ--GNCM-YGEKCKFLHSWTVGD-GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ  183 (393)
Q Consensus       108 ~~~~i~c~~~~~--~~~~-~g~~dg~i~vwd~~~-~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~  183 (393)
                      .+..|.+++|++  +.++ .|+-|++||+|+++. +.-.-+....|.++|.+++|+.||..+++|+.|+.+++||+.+++
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            345889999997  3444 699999999999986 322235567799999999999999999999999999999999998


Q ss_pred             EEEEEecCCceEEEE--eC--CCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEecc
Q 016224          184 CAGVINLGGEVGCMI--SE--GPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNV  258 (393)
Q Consensus       184 ~~~~~~~~~~~~~~~--~~--~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~  258 (393)
                      ....-.+..++..+.  ..  -..|++| .|.+|++||++....+......+.++++..-..+++++..+..|.+|+++.
T Consensus       106 ~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n  185 (347)
T KOG0647|consen  106 VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLEN  185 (347)
T ss_pred             eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCC
Confidence            877777777766543  32  2356665 999999999999998877788889999998888999999999999999988


Q ss_pred             CCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCc--ceeeEeccCcc---------ceEEEEEcC--CE
Q 016224          259 TTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETL--QCIQTLTEHTS---------VVMSLLCWD--QF  325 (393)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~~~---------~v~~l~~~~--~~  325 (393)
                      ....++.+.....+.....++..+.+..+.|+-+|.+.|..+..+  +.-.+|+.|..         .|.+|+|++  ..
T Consensus       186 ~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgt  265 (347)
T KOG0647|consen  186 PPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGT  265 (347)
T ss_pred             CcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccce
Confidence            765555444433344444455556667799999999999998876  44556677763         467888884  57


Q ss_pred             EEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCC
Q 016224          326 LLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE  368 (393)
Q Consensus       326 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  368 (393)
                      |++++.||++.+||-....++.....+..  ++.+..|+.++.
T Consensus       266 lvTaGsDGtf~FWDkdar~kLk~s~~~~q--pItcc~fn~~G~  306 (347)
T KOG0647|consen  266 LVTAGSDGTFSFWDKDARTKLKTSETHPQ--PITCCSFNRNGS  306 (347)
T ss_pred             EEEecCCceEEEecchhhhhhhccCcCCC--ccceeEecCCCC
Confidence            99999999999999876666555554444  477777766544

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=7.8e-25  Score=191.81  Aligned_cols=267  Identities=18%  Similarity=0.249  Sum_probs=212.4

Q ss_pred             ceEEeeEec--CcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 016224          111 DILCRNWVQ--GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI  188 (393)
Q Consensus       111 ~i~c~~~~~--~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~  188 (393)
                      .++.+...+  +.+++|+.|..+.++|...+ +.+.+++||...|+.+.|+++...+++++.|..|+||...........
T Consensus       221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~-q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~  299 (506)
T KOG0289|consen  221 GITALDIIPSSSKILTGGEDKTAVLFDKPSN-QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS  299 (506)
T ss_pred             CeeEEeecCCCCcceecCCCCceEEEecchh-hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence            666777666  57889999999999999998 999999999999999999999999999999999999998776655444


Q ss_pred             ecC-CceEE--EEeCCCEEEEE-cCCeEEEEECCCCceeeecCC---CCcEEEEEEeCC--EEEEEeCCCcEEEEEeccC
Q 016224          189 NLG-GEVGC--MISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGP---VGQVYAMAVGND--LLFAGTQDGAILAWKFNVT  259 (393)
Q Consensus       189 ~~~-~~~~~--~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~---~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~  259 (393)
                      ..+ .++..  ..+.+.+++.+ .|+...+.|++++..+....+   .-.+++.+|+||  +|.+|+.|+.|++||+...
T Consensus       300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~  379 (506)
T KOG0289|consen  300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ  379 (506)
T ss_pred             ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence            433 33433  34678877765 888999999999998844443   345899999999  8899999999999999987


Q ss_pred             CccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcceeeEeccCc-cceEEEEEc--CCEEEEEeCCCc
Q 016224          260 TNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHT-SVVMSLLCW--DQFLLSCSLDKT  334 (393)
Q Consensus       260 ~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~~--~~~l~s~s~dg~  334 (393)
                          .....+.+|.++|.+++|+.|  +|++++.|+.|++||+|..+...++.... ..+.++.|+  |.+|+.++.|=+
T Consensus       380 ----~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~  455 (506)
T KOG0289|consen  380 ----TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQ  455 (506)
T ss_pred             ----cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeE
Confidence                446788999999999999754  79999999999999999988888776433 368888887  889999988877


Q ss_pred             EEEEEcCCC--cceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          335 IKVWFATDS--GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       335 i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      |++++-.+.  .++..+..+.  .....+.|..   ..+++++++.|..++++.+
T Consensus       456 Vy~~~k~~k~W~~~~~~~~~s--g~st~v~Fg~---~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  456 VYICKKKTKSWTEIKELADHS--GLSTGVRFGE---HAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             EEEEecccccceeeehhhhcc--cccceeeecc---cceEEeeccchhheEEeec
Confidence            777764332  2233333333  2355666644   4449999999999998865

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=2.4e-25  Score=206.89  Aligned_cols=233  Identities=26%  Similarity=0.440  Sum_probs=204.2

Q ss_pred             cceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC-
Q 016224          105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-  181 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~-  181 (393)
                      ++.....+.|..|.|+  .+++|...|.+.++|+... .++.++++|.+.|++|+.+||+..++|||.|.+|++||..- 
T Consensus       408 RTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~  486 (888)
T KOG0306|consen  408 RTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASA-SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLV  486 (888)
T ss_pred             EEeccccEEEEEecCCCceEEEeccCCceEEEEeehh-hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEE
Confidence            3334447888899877  4668999999999999988 88888999999999999999999999999999999999631 


Q ss_pred             ----Ce--------EEEEEecCCceEEE--EeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEE
Q 016224          182 ----GQ--------CAGVINLGGEVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLF  243 (393)
Q Consensus       182 ----~~--------~~~~~~~~~~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~  243 (393)
                          +.        ..++++....+.++  .+++++|+++ .|+++++|-+.+-+.. .+.+|.-+|.+|..+++  +++
T Consensus       487 ~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSkliv  566 (888)
T KOG0306|consen  487 VSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIV  566 (888)
T ss_pred             eccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEE
Confidence                11        12445566666655  4789999999 8999999999998876 99999999999999998  999


Q ss_pred             EEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEE
Q 016224          244 AGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC  321 (393)
Q Consensus       244 ~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~  321 (393)
                      ||+.|..|++|-+.-+    .+.+.+.+|...|+++.|-++  .+++++.|+.|+-||-...+.++++.+|...|.+++.
T Consensus       567 TgSADKnVKiWGLdFG----DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav  642 (888)
T KOG0306|consen  567 TGSADKNVKIWGLDFG----DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAV  642 (888)
T ss_pred             eccCCCceEEeccccc----hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEE
Confidence            9999999999988887    677889999999999999754  6999999999999999999999999999999999998


Q ss_pred             c--CCEEEEEeCCCcEEEEEcCC
Q 016224          322 W--DQFLLSCSLDKTIKVWFATD  342 (393)
Q Consensus       322 ~--~~~l~s~s~dg~i~iwd~~~  342 (393)
                      .  |.+++++|.|.+|++|....
T Consensus       643 ~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  643 SPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             cCCCCeEEeccCCceeEeeeccC
Confidence            7  77999999999999997644

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.3e-25  Score=181.63  Aligned_cols=234  Identities=20%  Similarity=0.275  Sum_probs=189.4

Q ss_pred             eeEecCcEEEecCCCeEEEEECCCCc--EEEEEecCCcCCEEEEEec-C-CCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 016224          115 RNWVQGNCMYGEKCKFLHSWTVGDGF--KLLTQLEGHQKVVSGITLP-S-GSDKLYSGSKDETVRVWDCASGQCAGVINL  190 (393)
Q Consensus       115 ~~~~~~~~~~g~~dg~i~vwd~~~~~--~~~~~l~~h~~~I~~i~~s-~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~  190 (393)
                      +.|....+++++.|++|+|+.+..+-  +++.+|.+|+++|..++|. | -|.+||+++.||.|.||.-+.++-.+.   
T Consensus        19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~---   95 (299)
T KOG1332|consen   19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKA---   95 (299)
T ss_pred             hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhh---
Confidence            45667788999999999999998553  7889999999999999994 3 799999999999999999887742211   


Q ss_pred             CCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEEeccCCccccCc
Q 016224          191 GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVTTNCFEPA  266 (393)
Q Consensus       191 ~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~----~l~~~~~dg~I~vwd~~~~~~~~~~~  266 (393)
                                                      .....|...|++++|.|.    .|++++.||.|.|++++.. ......
T Consensus        96 --------------------------------~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~-g~w~t~  142 (299)
T KOG1332|consen   96 --------------------------------YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS-GGWTTS  142 (299)
T ss_pred             --------------------------------hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC-CCccch
Confidence                                            134578999999999987    8999999999999999876 223444


Q ss_pred             eeecCceeeEEEEEEcC----------------CEEEEecCCCcEEEeeCCCc--ceeeEeccCccceEEEEEcC-----
Q 016224          267 ASLKGHSLAVVSLVVGA----------------NKLYSGSMDNSIRVWNLETL--QCIQTLTEHTSVVMSLLCWD-----  323 (393)
Q Consensus       267 ~~~~~~~~~v~~l~~~~----------------~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~~~-----  323 (393)
                      .....|...|.+++|.+                ..|++|+.|..|+||+..++  +...+|.+|...|..++|.+     
T Consensus       143 ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~  222 (299)
T KOG1332|consen  143 KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLP  222 (299)
T ss_pred             hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCC
Confidence            55677999999998842                35999999999999999875  34456899999999999984     


Q ss_pred             -CEEEEEeCCCcEEEEEcCCC-cceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          324 -QFLLSCSLDKTIKVWFATDS-GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       324 -~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                       .+|++++.||++.||..... +.......+.....+..+.|+..+.   +|+.++.|+.|.+|.-
T Consensus       223 ~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn---~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  223 KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN---ILAVSGGDNKVTLWKE  285 (299)
T ss_pred             ceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecccc---EEEEecCCcEEEEEEe
Confidence             37999999999999987633 2222223334455688999988776   9999999999999974

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=7.1e-26  Score=207.34  Aligned_cols=227  Identities=27%  Similarity=0.392  Sum_probs=193.3

Q ss_pred             EEEecCCCeEEEEECCCCc-----EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe--EEEEEecCCce
Q 016224          122 CMYGEKCKFLHSWTVGDGF-----KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ--CAGVINLGGEV  194 (393)
Q Consensus       122 ~~~g~~dg~i~vwd~~~~~-----~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~~  194 (393)
                      +++|+.||.|++|++....     ..+..++.|.+.|.+|+...+++.|+++|.|-+|++|+...+.  ++.        
T Consensus        40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s--------  111 (735)
T KOG0308|consen   40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS--------  111 (735)
T ss_pred             EEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHh--------
Confidence            7899999999999987432     2477889999999999999999999999999999999987653  222        


Q ss_pred             EEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEE-eCC--EEEEEeCCCcEEEEEeccCCcc------ccC
Q 016224          195 GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAV-GND--LLFAGTQDGAILAWKFNVTTNC------FEP  265 (393)
Q Consensus       195 ~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~-~~~--~l~~~~~dg~I~vwd~~~~~~~------~~~  265 (393)
                                                   .+..|.+.|.|+++ .++  ++++|+-|+.|.+||++.+...      ...
T Consensus       112 -----------------------------tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t  162 (735)
T KOG0308|consen  112 -----------------------------TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT  162 (735)
T ss_pred             -----------------------------hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccc
Confidence                                         34679999999999 444  9999999999999999976320      112


Q ss_pred             ceeec-CceeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEc
Q 016224          266 AASLK-GHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFA  340 (393)
Q Consensus       266 ~~~~~-~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~  340 (393)
                      ...+. ++..+|++++.+++  .|++|+..+.|++||.++++.+..+++|+..|..+..+  |..++++|.||+|++||+
T Consensus       163 ~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdL  242 (735)
T KOG0308|consen  163 VNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDL  242 (735)
T ss_pred             cccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeec
Confidence            22333 78889999999865  89999999999999999999999999999999999887  789999999999999999


Q ss_pred             CCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          341 TDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       341 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      ....++..+..|...  +.++..+|+-.   .+++|+.||.|..=|+.+.
T Consensus       243 gqQrCl~T~~vH~e~--VWaL~~~~sf~---~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  243 GQQRCLATYIVHKEG--VWALQSSPSFT---HVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             cccceeeeEEeccCc--eEEEeeCCCcc---eEEecCCCCcEEecccCCc
Confidence            998888888877765  88888776665   8999999999999998874

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.94  E-value=4.6e-25  Score=190.25  Aligned_cols=254  Identities=20%  Similarity=0.314  Sum_probs=198.0

Q ss_pred             CCCCCCCCcccCCCCCCCcccccceeecceEEeeEe-c-C---cEEEecCCCeEEEEECCCCc---EEEEEecCCcCCEE
Q 016224           83 NNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWV-Q-G---NCMYGEKCKFLHSWTVGDGF---KLLTQLEGHQKVVS  154 (393)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~c~~~~-~-~---~~~~g~~dg~i~vwd~~~~~---~~~~~l~~h~~~I~  154 (393)
                      +.|..-.+.|.....   .+.....|.++|..+.|. . .   .+++++.|.++++|..+.+.   +.++.-+||+..|-
T Consensus       121 gsYDg~~riWd~~Gk---~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~  197 (423)
T KOG0313|consen  121 GSYDGTSRIWDLKGK---SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVD  197 (423)
T ss_pred             eecCCeeEEEecCCc---eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccccccee
Confidence            445555566665322   124456688899877774 2 2   37789999999999988652   23344459999999


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEECCCC-------------------------eEEEEEecC-CceEEE-EeCCCEEE-E
Q 016224          155 GITLPSGSDKLYSGSKDETVRVWDCASG-------------------------QCAGVINLG-GEVGCM-ISEGPWIF-I  206 (393)
Q Consensus       155 ~i~~s~~~~~l~s~s~dg~v~iwd~~~~-------------------------~~~~~~~~~-~~~~~~-~~~~~~l~-~  206 (393)
                      +|+..+++.++++|+.|.+|+||+.++.                         ..+-++..+ ..+..+ .++...++ +
T Consensus       198 sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~  277 (423)
T KOG0313|consen  198 SVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSV  277 (423)
T ss_pred             EEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEee
Confidence            9999999999999999999999993211                         011122222 223222 34444444 5


Q ss_pred             EcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC-
Q 016224          207 GVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA-  283 (393)
Q Consensus       207 ~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-  283 (393)
                      +.|.+|+.||+.++...........+.++.+++.  +|++|+.|..|++||.+.+... .....+.+|...|.++.|++ 
T Consensus       278 SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs-~v~~s~~gH~nwVssvkwsp~  356 (423)
T KOG0313|consen  278 SWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS-VVSQSLIGHKNWVSSVKWSPT  356 (423)
T ss_pred             cccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCc-eeEEeeecchhhhhheecCCC
Confidence            6999999999999998866666788999999987  9999999999999999988543 45678889999999999975 


Q ss_pred             --CEEEEecCCCcEEEeeCCCcc-eeeEeccCccceEEEEEc-CCEEEEEeCCCcEEEEEc
Q 016224          284 --NKLYSGSMDNSIRVWNLETLQ-CIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFA  340 (393)
Q Consensus       284 --~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~iwd~  340 (393)
                        .+|++++.|+++++||+|+-+ ++..+.+|...|.++.|. +.+|++|+.|.+|+|+..
T Consensus       357 ~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  357 NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             CceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEecc
Confidence              379999999999999999877 999999999999999999 669999999999999864

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=7e-26  Score=197.21  Aligned_cols=281  Identities=17%  Similarity=0.218  Sum_probs=223.9

Q ss_pred             CCCcccccc-eeecceEEeeEecC--cEEEecCCCeEEEEECCCC-cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCc
Q 016224           98 KNSNINNRA-VIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET  173 (393)
Q Consensus        98 ~~~~~~~~~-~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~  173 (393)
                      .|+...+.. .|...+-.+.|.++  .+.+|+.|..|++|++..+ ...+.+|.+..++|+++.|.+++.++++++.|+.
T Consensus       163 lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~  242 (459)
T KOG0288|consen  163 LPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKN  242 (459)
T ss_pred             cchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCc
Confidence            344444433 36678888888755  6778999999999998755 2477889999999999999999999999999999


Q ss_pred             EEEEECCCCeEEEEEecCCc-eEEEE---eCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCC
Q 016224          174 VRVWDCASGQCAGVINLGGE-VGCMI---SEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDG  249 (393)
Q Consensus       174 v~iwd~~~~~~~~~~~~~~~-~~~~~---~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg  249 (393)
                      +++|++...+...++..+.. +.+.-   .....+..+.|.+|++||+.........-....+..|..++..+++|-.|+
T Consensus       243 ~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~Dk  322 (459)
T KOG0288|consen  243 LRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDK  322 (459)
T ss_pred             eeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeeccccc
Confidence            99999999999988887654 33332   223333334888999999999887766666778888888877999999999


Q ss_pred             cEEEEEeccCCccccCceeecCceeeEEEEEE--cCCEEEEecCCCcEEEeeCCCcceeeEeccCc----cceEEEEEc-
Q 016224          250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLTEHT----SVVMSLLCW-  322 (393)
Q Consensus       250 ~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~l~~~-  322 (393)
                      +|++||.+..    .+......+. .|+++..  ++..|.+.+.|.++.++|+++.+....+.+..    ...+.+.|+ 
T Consensus       323 kvRfwD~Rs~----~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp  397 (459)
T KOG0288|consen  323 KVRFWDIRSA----DKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP  397 (459)
T ss_pred             ceEEEeccCC----ceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC
Confidence            9999999987    4444544443 7777765  56789999999999999999999888886422    235677777 


Q ss_pred             -CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          323 -DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       323 -~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                       +.|+++||.||.|+||++.+++....+........++++.|.|.+.   .|++++.++.+.+|-
T Consensus       398 d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~---~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  398 DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGS---GLLSADKQKAVTLWT  459 (459)
T ss_pred             CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCc---hhhcccCCcceEecC
Confidence             6799999999999999998887776666655555799999998766   799999999999993

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=6.7e-23  Score=165.55  Aligned_cols=278  Identities=18%  Similarity=0.260  Sum_probs=205.3

Q ss_pred             eecceEEeeEecCcEE--EecCCCeEEEEECCC------C--------cEEEEEecCCcCCEEEEEecCCCCEEEEEeCC
Q 016224          108 IKTDILCRNWVQGNCM--YGEKCKFLHSWTVGD------G--------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD  171 (393)
Q Consensus       108 ~~~~i~c~~~~~~~~~--~g~~dg~i~vwd~~~------~--------~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d  171 (393)
                      ....|..++|.+.+-+  .|+..++++|-....      +        .-+.+.-+.|++.|.|.+|+|+|++|++|+.|
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND  110 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence            3458889999977533  588999999865431      1        11233446789999999999999999999999


Q ss_pred             CcEEEEECCCCeEEE-----EEecC-CceEEEE------eCCCEEEEE--cCCeEEEEECCCCcee-eecCCCCcEEEEE
Q 016224          172 ETVRVWDCASGQCAG-----VINLG-GEVGCMI------SEGPWIFIG--VTNFVKAWNTQTNTDL-SLSGPVGQVYAMA  236 (393)
Q Consensus       172 g~v~iwd~~~~~~~~-----~~~~~-~~~~~~~------~~~~~l~~~--~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~  236 (393)
                      .+|++.-.+...+..     ++..+ +.+..+.      +.+.+|+++  .|-.|++-|...++.+ .+.+|.+.|.++-
T Consensus       111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly  190 (350)
T KOG0641|consen  111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY  190 (350)
T ss_pred             ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE
Confidence            999998765443321     22222 3333322      245666665  4457888888888776 8899999999875


Q ss_pred             -EeCCEEEEEeCCCcEEEEEeccCCccccCceeecC---ceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEec
Q 016224          237 -VGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKG---HSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLT  310 (393)
Q Consensus       237 -~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~---~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~  310 (393)
                       |+.-++++|++|.+|++||++-......+-..+.+   ....|.+++.+  +.+|++|-.|....+||++.++.++.|.
T Consensus       191 swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~  270 (350)
T KOG0641|consen  191 SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH  270 (350)
T ss_pred             EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC
Confidence             66669999999999999999876322111122222   23566677665  6799999999999999999999999999


Q ss_pred             cCccceEEEEEcC--CEEEEEeCCCcEEEEEcCCC--cceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          311 EHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDS--GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       311 ~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                      .|...|.++.|++  .||++++.|..|++-|+...  .++.......+...+..+.|+|..-   -+++.+.|.++.+|-
T Consensus       271 phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~---sfisssadkt~tlwa  347 (350)
T KOG0641|consen  271 PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDF---SFISSSADKTATLWA  347 (350)
T ss_pred             CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccc---eeeeccCcceEEEec
Confidence            9999999999994  48999999999999998532  1222233333344588899988655   689999999999998


Q ss_pred             CC
Q 016224          387 LP  388 (393)
Q Consensus       387 ~~  388 (393)
                      ++
T Consensus       348 ~~  349 (350)
T KOG0641|consen  348 LN  349 (350)
T ss_pred             cC
Confidence            75

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=2.1e-24  Score=190.51  Aligned_cols=274  Identities=18%  Similarity=0.252  Sum_probs=214.1

Q ss_pred             cceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEE---EEE-------------e-cCCcCCEEEEEecCCCCEE
Q 016224          105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKL---LTQ-------------L-EGHQKVVSGITLPSGSDKL  165 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~---~~~-------------l-~~h~~~I~~i~~s~~~~~l  165 (393)
                      ...|.-+++|++++++  ..++++.+++|.=|++.++...   +..             - +.|...|.+++.++|++||
T Consensus       138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyl  217 (479)
T KOG0299|consen  138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYL  217 (479)
T ss_pred             eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEE
Confidence            4456779999999988  5678999999999999877322   111             1 2788999999999999999


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEEecCC-ceEEEE---eCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC
Q 016224          166 YSGSKDETVRVWDCASGQCAGVINLGG-EVGCMI---SEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND  240 (393)
Q Consensus       166 ~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~---~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~  240 (393)
                      ++|+.|..|.||+.++.+.+..+..+. .+.++.   ...+++.++.|..|++|+++....+ ++.+|.+.|..|.....
T Consensus       218 atgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~r  297 (479)
T KOG0299|consen  218 ATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSR  297 (479)
T ss_pred             EecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcc
Confidence            999999999999999999999877654 444443   2566777889999999999998877 89999999999988665


Q ss_pred             --EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEE-cCCEEEEecCCCcEEEeeCCCcceeeEecc-C----
Q 016224          241 --LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV-GANKLYSGSMDNSIRVWNLETLQCIQTLTE-H----  312 (393)
Q Consensus       241 --~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~----  312 (393)
                        .+-+|+.|.++++|++...     ....+.++...+-|+++ +.+.|++|+.+|.|.+|++.+.+++.+... |    
T Consensus       298 eR~vtVGgrDrT~rlwKi~ee-----sqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~  372 (479)
T KOG0299|consen  298 ERCVTVGGRDRTVRLWKIPEE-----SQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP  372 (479)
T ss_pred             cceEEeccccceeEEEecccc-----ceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccC
Confidence              5555669999999999543     34556778888988887 677999999999999999999888877642 2    


Q ss_pred             -------ccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCc-ceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeE
Q 016224          313 -------TSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSG-NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSV  382 (393)
Q Consensus       313 -------~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I  382 (393)
                             ...|++|+..  .+++++|+.+|.|++|-+.++- .+..+....-..-|.+++|++++.  .+++..+....+
T Consensus       373 ~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk--~ivagiGkEhRl  450 (479)
T KOG0299|consen  373 ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGK--RIVAGIGKEHRL  450 (479)
T ss_pred             CccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCC--EEEEeccccccc
Confidence                   2267888877  5799999999999999997763 344555555556688999887754  344444444444


Q ss_pred             EEE
Q 016224          383 RFY  385 (393)
Q Consensus       383 ~iw  385 (393)
                      --|
T Consensus       451 GRW  453 (479)
T KOG0299|consen  451 GRW  453 (479)
T ss_pred             cee
Confidence            434

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=5.9e-25  Score=180.27  Aligned_cols=229  Identities=14%  Similarity=0.205  Sum_probs=178.1

Q ss_pred             EEEEecC-CCCEEEEEe-------CCCcEEEEECCCCeEEEEEe---cCCceEEE--E--eCCCEEEEEcCCeEEEEECC
Q 016224          154 SGITLPS-GSDKLYSGS-------KDETVRVWDCASGQCAGVIN---LGGEVGCM--I--SEGPWIFIGVTNFVKAWNTQ  218 (393)
Q Consensus       154 ~~i~~s~-~~~~l~s~s-------~dg~v~iwd~~~~~~~~~~~---~~~~~~~~--~--~~~~~l~~~~~~~i~v~d~~  218 (393)
                      .++.||| -.++||.+.       ..|++.|-++...+-+.+..   .....-.+  .  .++..+++..||++++||..
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            4678888 234444432       35899999987554444433   33332222  2  25566777899999999965


Q ss_pred             CCc--eeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CCEEEEec
Q 016224          219 TNT--DLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGS  290 (393)
Q Consensus       219 ~~~--~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~  290 (393)
                      ...  ...++.|..+|.++.|++.   .+++++.|++|++|+...+    ..+.++.+|...|....|+   ++.+++++
T Consensus        92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~----~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~S  167 (311)
T KOG0277|consen   92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP----NSVQTFNGHNSCIYQAAFSPHIPNLFASAS  167 (311)
T ss_pred             CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC----cceEeecCCccEEEEEecCCCCCCeEEEcc
Confidence            433  2378899999999999875   7888899999999998876    5578899999999999997   57899999


Q ss_pred             CCCcEEEeeCCCcceeeEeccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcc-eEEEEeecCCccEEEEEeeeC
Q 016224          291 MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGN-LEVTYTHNEEHGVLALCGMPD  366 (393)
Q Consensus       291 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~  366 (393)
                      .|+++++||++..-....+..|...+.+..|+   ...|+||+.|+.|++||++..+. +.++.+|.  -.|..+.|+|.
T Consensus       168 gd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~--~AVRkvk~Sph  245 (311)
T KOG0277|consen  168 GDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHG--LAVRKVKFSPH  245 (311)
T ss_pred             CCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCc--eEEEEEecCcc
Confidence            99999999998744444589999999999988   67899999999999999987664 34444444  45999999998


Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCce
Q 016224          367 SEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       367 ~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      ..+  +|++++.|-+++|||....
T Consensus       246 ~~~--lLaSasYDmT~riw~~~~~  267 (311)
T KOG0277|consen  246 HAS--LLASASYDMTVRIWDPERQ  267 (311)
T ss_pred             hhh--HhhhccccceEEecccccc
Confidence            654  8999999999999998754

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=8.1e-24  Score=178.23  Aligned_cols=260  Identities=14%  Similarity=0.181  Sum_probs=204.1

Q ss_pred             ecceEEeeEec--CcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224          109 KTDILCRNWVQ--GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG  186 (393)
Q Consensus       109 ~~~i~c~~~~~--~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  186 (393)
                      +..|..+.|++  +.++.++-||.+++||+... .+...++ |..++.+++|.+ ...+++|+.||.|+++|+.++....
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~-~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~   89 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN-SLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ   89 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccch-hhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCccee
Confidence            45788899984  36778999999999999876 5555665 999999999986 4579999999999999999998888


Q ss_pred             EEecCCceEEEEe---CCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccc
Q 016224          187 VINLGGEVGCMIS---EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCF  263 (393)
Q Consensus       187 ~~~~~~~~~~~~~---~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~  263 (393)
                      ...+...+.++..   .+.+++.++|++|++||.+.............|.++....+.|++|+.+..|.+||++.....+
T Consensus        90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~  169 (323)
T KOG1036|consen   90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPF  169 (323)
T ss_pred             eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchh
Confidence            8888888877763   6777778899999999999865554444555999999999999999999999999999875432


Q ss_pred             cCceeecCceeeEEEEEE--cCCEEEEecCCCcEEEeeCCCc----ceeeEeccCcc---------ceEEEEEcC--CEE
Q 016224          264 EPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETL----QCIQTLTEHTS---------VVMSLLCWD--QFL  326 (393)
Q Consensus       264 ~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~----~~~~~~~~~~~---------~v~~l~~~~--~~l  326 (393)
                      +  ..-..-.-.+.+++.  ++.-+++++-||.|.+=.+...    +....|+.|..         +|.+++|++  +.|
T Consensus       170 q--~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tf  247 (323)
T KOG1036|consen  170 Q--RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTF  247 (323)
T ss_pred             h--hccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceE
Confidence            1  111222334455554  4466899999999998766654    44556777643         689999995  579


Q ss_pred             EEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeC
Q 016224          327 LSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN  378 (393)
Q Consensus       327 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~  378 (393)
                      +||+.||.|.+||+.+.+.+..+...  +..|.+++|+.++.   .||.++.
T Consensus       248 aTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~---~LAia~s  294 (323)
T KOG1036|consen  248 ATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGS---LLAIASS  294 (323)
T ss_pred             EecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCC---eEEEEec
Confidence            99999999999999888777666554  44588888887766   8888864

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=6.5e-25  Score=193.61  Aligned_cols=251  Identities=19%  Similarity=0.284  Sum_probs=197.2

Q ss_pred             ccceeecceEEeeEecC---cEEEecCCCeEEEEECCCC---------cEEEEEecCCcCCEEEEEecCC-CCEEEEEeC
Q 016224          104 NRAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDG---------FKLLTQLEGHQKVVSGITLPSG-SDKLYSGSK  170 (393)
Q Consensus       104 ~~~~~~~~i~c~~~~~~---~~~~g~~dg~i~vwd~~~~---------~~~~~~l~~h~~~I~~i~~s~~-~~~l~s~s~  170 (393)
                      ....|.++|.-+.+.|.   -+.+++..+.|+|||..+-         ..+-..|.+|++.=++|+|++. .-+|++++.
T Consensus       119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~  198 (422)
T KOG0264|consen  119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD  198 (422)
T ss_pred             EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence            34567777777777654   3446789999999998732         1222378899998889999874 458999999


Q ss_pred             CCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeC
Q 016224          171 DETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQ  247 (393)
Q Consensus       171 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~  247 (393)
                      |++|.+||+........                              .......+.+|...|..++|++-   +|++++.
T Consensus       199 d~~i~lwdi~~~~~~~~------------------------------~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d  248 (422)
T KOG0264|consen  199 DHTICLWDINAESKEDK------------------------------VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD  248 (422)
T ss_pred             CCcEEEEeccccccCCc------------------------------cccceEEeecCCcceehhhccccchhhheeecC
Confidence            99999999976432100                              00112356789999999999875   9999999


Q ss_pred             CCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CCEEEEecCCCcEEEeeCCC-cceeeEeccCccceEEEEEcC
Q 016224          248 DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCWD  323 (393)
Q Consensus       248 dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~  323 (393)
                      |+.+.|||+++.  ..++.....+|...|.+++|+   +..||+|+.|++|.+||+|+ .+++.++.+|...|..|.|++
T Consensus       249 d~~L~iwD~R~~--~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP  326 (422)
T KOG0264|consen  249 DGKLMIWDTRSN--TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSP  326 (422)
T ss_pred             CCeEEEEEcCCC--CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCC
Confidence            999999999974  237778888999999999997   45899999999999999998 457899999999999999994


Q ss_pred             ---CEEEEEeCCCcEEEEEcCCCcc-----------eEEEEeec-CCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          324 ---QFLLSCSLDKTIKVWFATDSGN-----------LEVTYTHN-EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       324 ---~~l~s~s~dg~i~iwd~~~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                         ..|++++.|+.+.|||+..-..           .+.++.|. +...|..+.|.|..+  ..|++.++|+.+.||.+.
T Consensus       327 h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP--W~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  327 HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP--WTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCC--eEEEEecCCceEEEeecc
Confidence               5899999999999999974332           23334443 335688899988765  478899999999999986

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.2e-24  Score=182.19  Aligned_cols=280  Identities=17%  Similarity=0.247  Sum_probs=214.0

Q ss_pred             cceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECC--
Q 016224          105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA--  180 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~--  180 (393)
                      ...|+..|.-++-...  -+-+++.|.+.+||.++++ +++.++.+|.+.|.+|+|++.+.++++++.|++..||...  
T Consensus       144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg-~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~  222 (481)
T KOG0300|consen  144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG-ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVN  222 (481)
T ss_pred             hcccccceeeehhhcCCcceeecccccceeEEeeccc-cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhc
Confidence            3456667776665443  3446889999999999999 9999999999999999999999999999999999999731  


Q ss_pred             ----C--------Ce--------------------------EEEEEecCCceEE---EEeCCC-EEEEEcCCeEEEEECC
Q 016224          181 ----S--------GQ--------------------------CAGVINLGGEVGC---MISEGP-WIFIGVTNFVKAWNTQ  218 (393)
Q Consensus       181 ----~--------~~--------------------------~~~~~~~~~~~~~---~~~~~~-~l~~~~~~~i~v~d~~  218 (393)
                          .        ++                          .+..+..+..+..   +...++ .+.++.|.+-.+||++
T Consensus       223 ~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVE  302 (481)
T KOG0300|consen  223 WEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVE  302 (481)
T ss_pred             CcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeec
Confidence                1        00                          0001111111111   112344 4455699999999999


Q ss_pred             CCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc-CCEEEEecCCCc
Q 016224          219 TNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG-ANKLYSGSMDNS  294 (393)
Q Consensus       219 ~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~  294 (393)
                      +++.+ .+.+|....+.++-+|.  ++++.+.|.+.++||++..-   ..+..+.+|...|++..|. ++.+++|+.|.+
T Consensus       303 tge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI---~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrT  379 (481)
T KOG0300|consen  303 TGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI---QSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRT  379 (481)
T ss_pred             cCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhc---ceeeeecccccceeEEEEecCCceeecCCCce
Confidence            99998 88999999999999998  88999999999999999543   5677899999999999997 668999999999


Q ss_pred             EEEeeCCCc-ceeeEeccCccceEEEEEc-C-CEEEEEeCCCcEEEEEcCCCcceEEEE---eecCCccEEEEEeeeCCC
Q 016224          295 IRVWNLETL-QCIQTLTEHTSVVMSLLCW-D-QFLLSCSLDKTIKVWFATDSGNLEVTY---THNEEHGVLALCGMPDSE  368 (393)
Q Consensus       295 i~iwd~~~~-~~~~~~~~~~~~v~~l~~~-~-~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~  368 (393)
                      |++||+++. .++.++. -..+++.++.+ + ..|+.-..+..|++||+. +..+..+.   ...+...|.+.+|..+.+
T Consensus       380 vKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp  457 (481)
T KOG0300|consen  380 VKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHP  457 (481)
T ss_pred             EEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCc
Confidence            999999875 4566666 35577777777 4 467777777899999996 44433332   233344588888887766


Q ss_pred             CCcEEEEEeCCCeEEEEeCCcee
Q 016224          369 GKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       369 ~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      -. -|++++-|..+.-|++..-+
T Consensus       458 ~c-nLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  458 AC-NLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             cc-ccccccccceeeeeEecccC
Confidence            54 47888899999999987543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=5.7e-24  Score=189.11  Aligned_cols=265  Identities=20%  Similarity=0.271  Sum_probs=205.1

Q ss_pred             cceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 016224          110 TDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV  187 (393)
Q Consensus       110 ~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~  187 (393)
                      ++|..+.|++..  -+.....-.+.||+..+. ..++++...+..|.++.|-.||++|+.|+..|.|+|+|+.+...++.
T Consensus        27 ~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~-~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~  105 (487)
T KOG0310|consen   27 NSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTR-SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ  105 (487)
T ss_pred             CcceeEecCCCCCCceEEecccEEEEEecchh-hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH
Confidence            489999999742  233333456888998776 67777777889999999999999999999999999999766545555


Q ss_pred             EecCCc-e--EEEEe-CCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEecc
Q 016224          188 INLGGE-V--GCMIS-EGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNV  258 (393)
Q Consensus       188 ~~~~~~-~--~~~~~-~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~  258 (393)
                      +..+.. +  ..+.+ ++..++.+ .|+.+++||+.+...+ .+.+|.+.|.+.+++|-   ++++|+.||.|++||++.
T Consensus       106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~  185 (487)
T KOG0310|consen  106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS  185 (487)
T ss_pred             HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence            554433 2  23333 55666666 4558899999998876 78999999999999886   899999999999999998


Q ss_pred             CCccccCceeecCceeeEEEEEE--cCCEEEEecCCCcEEEeeCCC-cceeeEeccCccceEEEEEc--CCEEEEEeCCC
Q 016224          259 TTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDK  333 (393)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg  333 (393)
                      ..   ..+.++ .|..+|..+.+  ++..+++++ ...|++||+.+ ++.+..+..|...|+|+.+.  +..|++++.|+
T Consensus       186 ~~---~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~  260 (487)
T KOG0310|consen  186 LT---SRVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR  260 (487)
T ss_pred             CC---ceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccccc
Confidence            74   223333 47778877766  346777775 56899999985 55566666699999999998  48999999999


Q ss_pred             cEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          334 TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       334 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                      .|++||+.+.   ..........++++++.+|++.   .++.|-.||.+.+=+
T Consensus       261 ~VKVfd~t~~---Kvv~s~~~~~pvLsiavs~dd~---t~viGmsnGlv~~rr  307 (487)
T KOG0310|consen  261 HVKVFDTTNY---KVVHSWKYPGPVLSIAVSPDDQ---TVVIGMSNGLVSIRR  307 (487)
T ss_pred             ceEEEEccce---EEEEeeecccceeeEEecCCCc---eEEEecccceeeeeh
Confidence            9999997554   3444445566799999988766   899999999887653

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=9.5e-25  Score=190.15  Aligned_cols=232  Identities=20%  Similarity=0.304  Sum_probs=187.4

Q ss_pred             cceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEe-cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 016224          105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQL-EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l-~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~  181 (393)
                      ...|..+|.-+.|+||  .+++.+.+..+.+||+.++ ...+.+ ++|...+.+++|.||+..+++|+.|+++..||++.
T Consensus       265 lvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg-d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg  343 (519)
T KOG0293|consen  265 LVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG-DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG  343 (519)
T ss_pred             eecccCceEEEEECCCCCeEEecCchHheeeccCCcc-hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc
Confidence            4567789999999988  4567778888999999999 555544 45678999999999999999999999999999975


Q ss_pred             CeEEEEEecC--Cce--EEEEeCCCEEE-EEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEE
Q 016224          182 GQCAGVINLG--GEV--GCMISEGPWIF-IGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAW  254 (393)
Q Consensus       182 ~~~~~~~~~~--~~~--~~~~~~~~~l~-~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vw  254 (393)
                      .. ....+.-  ..+  ..+.++|+.++ ++.|..|++|+.++.....+.....+|++++.+.+  ++++.-.+..|++|
T Consensus       344 n~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LW  422 (519)
T KOG0293|consen  344 NI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLW  422 (519)
T ss_pred             ch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEe
Confidence            43 2222221  122  23446777766 46899999999998887767777889999999988  78888899999999


Q ss_pred             EeccCCccccCceeecCceeeE--EEEEEc---CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcC---CEE
Q 016224          255 KFNVTTNCFEPAASLKGHSLAV--VSLVVG---ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD---QFL  326 (393)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~~~v--~~l~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~---~~l  326 (393)
                      |+...    ..+..+.+|...-  ..-+|.   ..++++|++|+.|+||+..+++++.++.+|...|++++|++   .++
T Consensus       423 Dl~e~----~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~  498 (519)
T KOG0293|consen  423 DLEEN----KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMF  498 (519)
T ss_pred             ecchh----hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHh
Confidence            99955    5667777776543  333443   35899999999999999999999999999999999999994   589


Q ss_pred             EEEeCCCcEEEEEcCC
Q 016224          327 LSCSLDKTIKVWFATD  342 (393)
Q Consensus       327 ~s~s~dg~i~iwd~~~  342 (393)
                      |+++.||+|+||....
T Consensus       499 ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  499 ASASDDGTIRIWGPSD  514 (519)
T ss_pred             hccCCCCeEEEecCCc
Confidence            9999999999997653

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=4e-23  Score=196.39  Aligned_cols=219  Identities=16%  Similarity=0.202  Sum_probs=162.8

Q ss_pred             ceeecceEEeeEec-C--cEEEecCCCeEEEEECCCCc------EEEEEecCCcCCEEEEEecCCC-CEEEEEeCCCcEE
Q 016224          106 AVIKTDILCRNWVQ-G--NCMYGEKCKFLHSWTVGDGF------KLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVR  175 (393)
Q Consensus       106 ~~~~~~i~c~~~~~-~--~~~~g~~dg~i~vwd~~~~~------~~~~~l~~h~~~I~~i~~s~~~-~~l~s~s~dg~v~  175 (393)
                      ..|..+|.+++|++ +  .+++|+.|++|++||+.++.      +.+..+.+|...|.+|+|+|++ ++|++++.|++|+
T Consensus        72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVr  151 (493)
T PTZ00421         72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVN  151 (493)
T ss_pred             eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEE
Confidence            45778999999997 3  46789999999999997541      3567899999999999999975 7999999999999


Q ss_pred             EEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEE
Q 016224          176 VWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILA  253 (393)
Q Consensus       176 iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~v  253 (393)
                      |||+++++.+..+                                     ..|...|.+++|+++  +|++++.|+.|++
T Consensus       152 IWDl~tg~~~~~l-------------------------------------~~h~~~V~sla~spdG~lLatgs~Dg~IrI  194 (493)
T PTZ00421        152 VWDVERGKAVEVI-------------------------------------KCHSDQITSLEWNLDGSLLCTTSKDKKLNI  194 (493)
T ss_pred             EEECCCCeEEEEE-------------------------------------cCCCCceEEEEEECCCCEEEEecCCCEEEE
Confidence            9999987755433                                     467788999999988  8999999999999


Q ss_pred             EEeccCCccccCceeecCceeeE-EEEEEc--CCEEEEec----CCCcEEEeeCCCcc-eeeEeccCcc-ceEEEEEc--
Q 016224          254 WKFNVTTNCFEPAASLKGHSLAV-VSLVVG--ANKLYSGS----MDNSIRVWNLETLQ-CIQTLTEHTS-VVMSLLCW--  322 (393)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~v-~~l~~~--~~~l~sg~----~dg~i~iwd~~~~~-~~~~~~~~~~-~v~~l~~~--  322 (393)
                      ||++++    +.+..+..|.... ..+.|.  ++.+++++    .|+.|++||+++.. ++.....+.. .+....|+  
T Consensus       195 wD~rsg----~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d  270 (493)
T PTZ00421        195 IDPRDG----TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDED  270 (493)
T ss_pred             EECCCC----cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCC
Confidence            999986    4455666776543 234443  45666543    47999999998754 4444443333 34444454  


Q ss_pred             CCEEEEEe-CCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeC
Q 016224          323 DQFLLSCS-LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD  366 (393)
Q Consensus       323 ~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  366 (393)
                      +++|++++ .|+.|++||+.++...... ..........+++.|.
T Consensus       271 ~~~L~lggkgDg~Iriwdl~~~~~~~~~-~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        271 TNLLYIGSKGEGNIRCFELMNERLTFCS-SYSSVEPHKGLCMMPK  314 (493)
T ss_pred             CCEEEEEEeCCCeEEEEEeeCCceEEEe-eccCCCCCcceEeccc
Confidence            66788777 5999999999877654432 2223334667777764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.93  E-value=5.2e-25  Score=191.83  Aligned_cols=248  Identities=19%  Similarity=0.287  Sum_probs=199.2

Q ss_pred             CcccCCCCCCCcccccceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEE
Q 016224           90 NNYRAGNSKNSNINNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYS  167 (393)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s  167 (393)
                      .-|+....+...+..-...-+.|+.+.|..+  .+++++.|+.+++|++++. +..++|.+|++.|+++.|......+++
T Consensus       200 k~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~-r~~~TLsGHtdkVt~ak~~~~~~~vVs  278 (459)
T KOG0288|consen  200 KLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL-RLRHTLSGHTDKVTAAKFKLSHSRVVS  278 (459)
T ss_pred             hhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch-hhhhhhcccccceeeehhhccccceee
Confidence            4566655554455555566678999999755  4567999999999999998 999999999999999999887777999


Q ss_pred             EeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEE
Q 016224          168 GSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFA  244 (393)
Q Consensus       168 ~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~  244 (393)
                      |+.|.+|++||+....|.+++........+......+++| .|+.|++||+++..........+.|+++..+.+  .|++
T Consensus       279 gs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLs  358 (459)
T KOG0288|consen  279 GSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLS  358 (459)
T ss_pred             ccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEee
Confidence            9999999999999999998887776665555555566666 889999999999988866666679999999888  7888


Q ss_pred             EeCCCcEEEEEeccCCcc--ccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccc--eEEEE
Q 016224          245 GTQDGAILAWKFNVTTNC--FEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSV--VMSLL  320 (393)
Q Consensus       245 ~~~dg~I~vwd~~~~~~~--~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~l~  320 (393)
                      .+.|.++.+.|+++....  +.......+|.-.-..+++++.|+++|+.||.|+||++.++++...+......  |+++.
T Consensus       359 ssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~  438 (459)
T KOG0288|consen  359 SSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLS  438 (459)
T ss_pred             ecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEE
Confidence            899999999999986321  11111122333333445556779999999999999999999999988765554  99999


Q ss_pred             Ec--CCEEEEEeCCCcEEEE
Q 016224          321 CW--DQFLLSCSLDKTIKVW  338 (393)
Q Consensus       321 ~~--~~~l~s~s~dg~i~iw  338 (393)
                      |+  |..|++++.++.+.+|
T Consensus       439 W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  439 WNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             EcCCCchhhcccCCcceEec
Confidence            98  7899999999999999

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.1e-23  Score=176.18  Aligned_cols=240  Identities=15%  Similarity=0.211  Sum_probs=189.4

Q ss_pred             cceeecceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCC--EEEEEeCCCcEEEEECCCC
Q 016224          105 RAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD--KLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~--~l~s~s~dg~v~iwd~~~~  182 (393)
                      ...|..+|+|++.+.--+++|+.|-+|+|||+... ..+..+-.|.+.|+++.|.+...  .|++|+.||.|.+|+...-
T Consensus        39 ~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~-~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W  117 (362)
T KOG0294|consen   39 FSAHAGSITALAVSGPYVASGSSDETIHIYDMRKR-KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW  117 (362)
T ss_pred             ccccccceeEEEecceeEeccCCCCcEEEEeccch-hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe
Confidence            45578899999999999999999999999999988 77778888999999999988654  8999999999999999887


Q ss_pred             eEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCC
Q 016224          183 QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT  260 (393)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~  260 (393)
                      +++..+                                     ..|..+|+.++++|.  +-++.+.|+.++.||+-.+.
T Consensus       118 ~~~~sl-------------------------------------K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen  118 ELLKSL-------------------------------------KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             EEeeee-------------------------------------cccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence            766554                                     578888999999998  77788999999999998875


Q ss_pred             ccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc-CCEEEEEeCCCcEEEEE
Q 016224          261 NCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWF  339 (393)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~iwd  339 (393)
                      ..+.  ..+. +......+...|++|+.+..+ .|-+|.+.+-.....+... ..+.++.|. +..|++|..|+.|++||
T Consensus       161 ~a~v--~~L~-~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~~~~L~vG~d~~~i~~~D  235 (362)
T KOG0294|consen  161 VAFV--LNLK-NKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFLDGSELLVGGDNEWISLKD  235 (362)
T ss_pred             ccee--eccC-CcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeecCCceEEEecCCceEEEec
Confidence            4322  2222 333333334457788887765 5889999887766665533 456666666 78999999999999999


Q ss_pred             cCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          340 ATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      ..+...+..+..|...  |-++.+.-+ +...+|+|+|+||.|++||++.-
T Consensus       236 ~ds~~~~~~~~AH~~R--VK~i~~~~~-~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  236 TDSDTPLTEFLAHENR--VKDIASYTN-PEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             cCCCccceeeecchhh--eeeeEEEec-CCceEEEEeccCceEEEEEcccc
Confidence            9887777777777765  555553332 23349999999999999999765

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=4.7e-23  Score=173.65  Aligned_cols=235  Identities=15%  Similarity=0.160  Sum_probs=186.8

Q ss_pred             CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEe-CC-CEEEEEcCCeEEEEECCCCceeeec
Q 016224          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS-EG-PWIFIGVTNFVKAWNTQTNTDLSLS  226 (393)
Q Consensus       149 h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~~~~~i~v~d~~~~~~~~~~  226 (393)
                      .+..|++|.|+|.++.|+.+++||++++||+...+....+.+..++..... +. ..++.+.|+.|+.+|+.++....+.
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~ig   91 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIG   91 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeec
Confidence            478999999999999999999999999999999988888888888765543 33 4555569999999999999999999


Q ss_pred             CCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcc
Q 016224          227 GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQ  304 (393)
Q Consensus       227 ~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~  304 (393)
                      .|...|.+|.+.+.  .+++|+.|++|++||.+..    .....+. ....|.++...++.|++|+.|..|.+||+++..
T Consensus        92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~----~~~~~~d-~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen   92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK----VVVGTFD-QGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             cCCCceEEEEeeccCCeEEEcccCccEEEEecccc----ccccccc-cCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence            99999999999954  9999999999999999974    2233333 334899999999999999999999999999866


Q ss_pred             eeeEec--cCccceEEEEEcC--CEEEEEeCCCcEEEEEcCCC----cceEEEEeecC-------CccEEEEEeeeCCCC
Q 016224          305 CIQTLT--EHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDS----GNLEVTYTHNE-------EHGVLALCGMPDSEG  369 (393)
Q Consensus       305 ~~~~~~--~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~-------~~~v~~~~~~~~~~~  369 (393)
                      ......  .-+-.+.++++.+  .-.++++-||.|.+=.+...    .+...+..|..       -.+|.+++|+|-.. 
T Consensus       167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-  245 (323)
T KOG1036|consen  167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-  245 (323)
T ss_pred             chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc-
Confidence            543222  2344567777764  56888999999888665544    22233333322       24688999999866 


Q ss_pred             CcEEEEEeCCCeEEEEeCCcee
Q 016224          370 KPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       370 ~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                        .|+||+.||.|.+||+.+.+
T Consensus       246 --tfaTgGsDG~V~~Wd~~~rK  265 (323)
T KOG1036|consen  246 --TFATGGSDGIVNIWDLFNRK  265 (323)
T ss_pred             --eEEecCCCceEEEccCcchh
Confidence              89999999999999997653

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=5.5e-23  Score=196.49  Aligned_cols=220  Identities=14%  Similarity=0.105  Sum_probs=163.3

Q ss_pred             cceeecceEEeeEecC---cEEEecCCCeEEEEECCCCc-------EEEEEecCCcCCEEEEEecCCCCE-EEEEeCCCc
Q 016224          105 RAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDGF-------KLLTQLEGHQKVVSGITLPSGSDK-LYSGSKDET  173 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~---~~~~g~~dg~i~vwd~~~~~-------~~~~~l~~h~~~I~~i~~s~~~~~-l~s~s~dg~  173 (393)
                      ...|..+|.+++|+++   .+++|+.|++|+|||+.++.       ..+..+.+|...|.+++|+|++.. |++++.|++
T Consensus        70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt  149 (568)
T PTZ00420         70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF  149 (568)
T ss_pred             EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCe
Confidence            3457789999999974   46689999999999997541       234578899999999999998875 579999999


Q ss_pred             EEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcE
Q 016224          174 VRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAI  251 (393)
Q Consensus       174 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I  251 (393)
                      |+|||+.+++.+..+                                      .+...|.+++|+++  +|++++.|+.|
T Consensus       150 IrIWDl~tg~~~~~i--------------------------------------~~~~~V~SlswspdG~lLat~s~D~~I  191 (568)
T PTZ00420        150 VNIWDIENEKRAFQI--------------------------------------NMPKKLSSLKWNIKGNLLSGTCVGKHM  191 (568)
T ss_pred             EEEEECCCCcEEEEE--------------------------------------ecCCcEEEEEECCCCCEEEEEecCCEE
Confidence            999999988755332                                      13456899999987  88889999999


Q ss_pred             EEEEeccCCccccCceeecCceeeEEEEE-------EcCCEEEEecCCC----cEEEeeCCC-cceeeEeccCc--cceE
Q 016224          252 LAWKFNVTTNCFEPAASLKGHSLAVVSLV-------VGANKLYSGSMDN----SIRVWNLET-LQCIQTLTEHT--SVVM  317 (393)
Q Consensus       252 ~vwd~~~~~~~~~~~~~~~~~~~~v~~l~-------~~~~~l~sg~~dg----~i~iwd~~~-~~~~~~~~~~~--~~v~  317 (393)
                      ++||++++    +.+..+.+|...+.+..       .++++|++++.|+    .|+|||+++ .+++..+..+.  ..+.
T Consensus       192 rIwD~Rsg----~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~  267 (568)
T PTZ00420        192 HIIDPRKQ----EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLI  267 (568)
T ss_pred             EEEECCCC----cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceE
Confidence            99999987    45567778876543221       2456888877664    799999995 56666554332  2222


Q ss_pred             EEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCC
Q 016224          318 SLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDS  367 (393)
Q Consensus       318 ~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  367 (393)
                      .....  +.++++|+.|+.|++|++..+ .+..+.......+...++|+|..
T Consensus       268 p~~D~~tg~l~lsGkGD~tIr~~e~~~~-~~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        268 PHYDESTGLIYLIGKGDGNCRYYQHSLG-SIRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             EeeeCCCCCEEEEEECCCeEEEEEccCC-cEEeecccccCCCccceEEcccc
Confidence            22222  668999999999999999765 34444444455667788888863

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=1.2e-23  Score=173.25  Aligned_cols=239  Identities=15%  Similarity=0.204  Sum_probs=191.1

Q ss_pred             EEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC---ce--EEEEe--CCCEEEEEcCCeEEEEE
Q 016224          144 TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG---EV--GCMIS--EGPWIFIGVTNFVKAWN  216 (393)
Q Consensus       144 ~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~---~~--~~~~~--~~~~l~~~~~~~i~v~d  216 (393)
                      +.+++|...|.+|+|+.+|..|++|+.|+++++|+++..+........+   .+  .++.+  ...+.+++.|..|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            5678899999999999999999999999999999998875554443222   22  22222  34445556889999999


Q ss_pred             CCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCC
Q 016224          217 TQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMD  292 (393)
Q Consensus       217 ~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~d  292 (393)
                      ++.++..........-.-+.|+|+  +++++..|..|.+.|.++...    ... ......+..++|+  +++|+....-
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~----~~~-~~~~~e~ne~~w~~~nd~Fflt~Gl  168 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKI----VNE-EQFKFEVNEISWNNSNDLFFLTNGL  168 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccce----eeh-hcccceeeeeeecCCCCEEEEecCC
Confidence            999998866666666667788887  999999999999999987632    222 2233445555554  6677777778


Q ss_pred             CcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCC
Q 016224          293 NSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGK  370 (393)
Q Consensus       293 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  370 (393)
                      |+|.|......++++++++|.....||.|+  |++||+|+.|-.+.+||+.+.-++..+..+.-+  |..+.|+.++.  
T Consensus       169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp--VRTlSFS~dg~--  244 (313)
T KOG1407|consen  169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWP--VRTLSFSHDGR--  244 (313)
T ss_pred             ceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCc--eEEEEeccCcc--
Confidence            999999999999999999999999999998  789999999999999999888887777766554  88999988766  


Q ss_pred             cEEEEEeCCCeEEEEeCCceee
Q 016224          371 PVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       371 ~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                       +|+++|+|..|-|=++++|.-
T Consensus       245 -~lASaSEDh~IDIA~vetGd~  265 (313)
T KOG1407|consen  245 -MLASASEDHFIDIAEVETGDR  265 (313)
T ss_pred             -eeeccCccceEEeEecccCCe
Confidence             999999999998888888753

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=5.9e-25  Score=186.09  Aligned_cols=207  Identities=21%  Similarity=0.368  Sum_probs=178.9

Q ss_pred             CCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecC
Q 016224          148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSG  227 (393)
Q Consensus       148 ~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~  227 (393)
                      +.++.+.|..|+||+++|++|+.||-|.+||..+|+..+.++...                             .-.+.-
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA-----------------------------qd~fMM  261 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA-----------------------------QDNFMM  261 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh-----------------------------hcceee
Confidence            456778899999999999999999999999999998765443211                             113445


Q ss_pred             CCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeec-CceeeEEEEEEc--CCEEEEecCCCcEEEeeCCC
Q 016224          228 PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK-GHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET  302 (393)
Q Consensus       228 ~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~  302 (393)
                      +...|.|+.|+.|  +|++|+.||.|++|.++++    .++..+. .|...|+++.|+  +..+++++.|.++++--+.+
T Consensus       262 md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG----~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS  337 (508)
T KOG0275|consen  262 MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG----QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS  337 (508)
T ss_pred             cccceEEEeecccHHHhhccCcCCcEEEEEEecc----hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc
Confidence            7789999999998  9999999999999999998    5566665 799999999996  55899999999999999999


Q ss_pred             cceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCC
Q 016224          303 LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN  380 (393)
Q Consensus       303 ~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg  380 (393)
                      |++++.|++|...|+...|.  |.++++++.||+|++|+.++.+++..+.....+..+..+...|..+.  .++.+...+
T Consensus       338 GK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe--h~iVCNrsn  415 (508)
T KOG0275|consen  338 GKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE--HFIVCNRSN  415 (508)
T ss_pred             chhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc--eEEEEcCCC
Confidence            99999999999999999997  78999999999999999999999999888888888999988887654  577777888


Q ss_pred             eEEEEeCCc
Q 016224          381 SVRFYDLPS  389 (393)
Q Consensus       381 ~I~iwd~~s  389 (393)
                      +|+|-++..
T Consensus       416 tv~imn~qG  424 (508)
T KOG0275|consen  416 TVYIMNMQG  424 (508)
T ss_pred             eEEEEeccc
Confidence            999988753

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=1.7e-23  Score=184.85  Aligned_cols=240  Identities=20%  Similarity=0.369  Sum_probs=194.9

Q ss_pred             EEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEE-e-------------cC-----Cce--EEEEeCC
Q 016224          143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI-N-------------LG-----GEV--GCMISEG  201 (393)
Q Consensus       143 ~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~-------------~~-----~~~--~~~~~~~  201 (393)
                      ...+..|.-+|++++++|+..++++++.|++|.-|++.+++....+ +             .+     ..+  .++.+++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            5667789999999999999999999999999999999988744111 1             01     112  3345799


Q ss_pred             CEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEE
Q 016224          202 PWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVV  277 (393)
Q Consensus       202 ~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~  277 (393)
                      ++|++| .|..|.||+.++.+.+ .+.+|.+.|.+++|-..  .|++++.|.+|++|++...    ..+.++.+|+..|.
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~----s~vetlyGHqd~v~  290 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL----SYVETLYGHQDGVL  290 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh----HHHHHHhCCcccee
Confidence            999987 6778999999999988 67999999999999654  9999999999999999876    66788899999999


Q ss_pred             EEEEcC-CE-EEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc-CCEEEEEeCCCcEEEEEcCCCcceEEEEeec-
Q 016224          278 SLVVGA-NK-LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHN-  353 (393)
Q Consensus       278 ~l~~~~-~~-l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-  353 (393)
                      .|..-. .. +-+|+.|.++++|++.. +....+.+|.+.+-|++|- ...+++||.+|.|.+|++.+.+.+....... 
T Consensus       291 ~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHg  369 (479)
T KOG0299|consen  291 GIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHG  369 (479)
T ss_pred             eechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeecccc
Confidence            998753 34 55566999999999943 3445677888899999987 6799999999999999998776655443211 


Q ss_pred             ---------CCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          354 ---------EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       354 ---------~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                               ....+.+++..|.++   ++++|+.+|.|++|.+.++
T Consensus       370 v~~~~~~~~~~~Witsla~i~~sd---L~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  370 VIPELDPVNGNFWITSLAVIPGSD---LLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ccCCccccccccceeeeEecccCc---eEEecCCCCceEEEEecCC
Confidence                     112688888888777   9999999999999999876

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=5.4e-24  Score=200.93  Aligned_cols=241  Identities=14%  Similarity=0.225  Sum_probs=174.2

Q ss_pred             EEEEec-CCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-----------CceEEEEeC-----CCEE
Q 016224          142 LLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-----------GEVGCMISE-----GPWI  204 (393)
Q Consensus       142 ~~~~l~-~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-----------~~~~~~~~~-----~~~l  204 (393)
                      ..+.++ +|.+.|.+|.|++||+|||+|+.|+.|+||.+...+....-...           ..+......     ++..
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            344566 89999999999999999999999999999998763331111000           000000000     0111


Q ss_pred             EE--Ec-CCeE----EEEECCCCceeeecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccccCceeecCceeeE
Q 016224          205 FI--GV-TNFV----KAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV  276 (393)
Q Consensus       205 ~~--~~-~~~i----~v~d~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v  276 (393)
                      ..  +. ...+    +++-+.......+.+|.+.|.+|.|+.+ +|++++.|.+|++|++...    +++..+. |...|
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~----~CL~~F~-HndfV  412 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK----ECLKVFS-HNDFV  412 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc----ceeeEEe-cCCee
Confidence            11  11 1111    1112222223378899999999999998 9999999999999999876    5566654 99999


Q ss_pred             EEEEEc---CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEe
Q 016224          277 VSLVVG---ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYT  351 (393)
Q Consensus       277 ~~l~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  351 (393)
                      +|++|+   .++|++|+-|+.||||++...+.+.-...+ ..|+++++.  |++.+.|+.+|..++|+....+.......
T Consensus       413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I  491 (712)
T KOG0283|consen  413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI  491 (712)
T ss_pred             EEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence            999996   569999999999999999987776665554 789999988  88999999999999999876654433332


Q ss_pred             ecC------CccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          352 HNE------EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       352 ~~~------~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      +..      ...|+.+.|.|..++  .|++.+.|..|||+|+++-
T Consensus       492 ~~~~~Kk~~~~rITG~Q~~p~~~~--~vLVTSnDSrIRI~d~~~~  534 (712)
T KOG0283|consen  492 RLHNKKKKQGKRITGLQFFPGDPD--EVLVTSNDSRIRIYDGRDK  534 (712)
T ss_pred             eeccCccccCceeeeeEecCCCCC--eEEEecCCCceEEEeccch
Confidence            211      236999999987665  4777778999999999554

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=6.7e-23  Score=172.17  Aligned_cols=259  Identities=16%  Similarity=0.198  Sum_probs=201.1

Q ss_pred             CCCCcceeeccCCCC--CCCCCCCCCCcccCCCCCCCcccccceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcE
Q 016224           66 ANGAAAKRFANNTWG--RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFK  141 (393)
Q Consensus        66 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~  141 (393)
                      .+....+.++|....  ..++..+.-+.|...............|..++.|++|+.+  ..++|+.|+.+++||+.++  
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~--  104 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG--  104 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC--
Confidence            445556666664443  2345555556776655433333556678889999999977  4668999999999999998  


Q ss_pred             EEEEecCCcCCEEEEEecCCCC--EEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEE-cCCeEEEEECC
Q 016224          142 LLTQLEGHQKVVSGITLPSGSD--KLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIG-VTNFVKAWNTQ  218 (393)
Q Consensus       142 ~~~~l~~h~~~I~~i~~s~~~~--~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~v~d~~  218 (393)
                      .+.++..|.++|.++.|-+...  .|+|||+|++|+.||.+....+.++.+++.+-++.-...+++++ .++.|.+|+++
T Consensus       105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~  184 (347)
T KOG0647|consen  105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLE  184 (347)
T ss_pred             CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcC
Confidence            4556778999999999976554  89999999999999999999999999999998888777777776 78899999998


Q ss_pred             CCcee---eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCce---------eeEEEEEEcCC
Q 016224          219 TNTDL---SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHS---------LAVVSLVVGAN  284 (393)
Q Consensus       219 ~~~~~---~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~---------~~v~~l~~~~~  284 (393)
                      .+...   ......-++.+++...+  ..+.|+-+|.+.+..+.....  +.-..++.|.         -.|.+|+|.+.
T Consensus       185 n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~--~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~  262 (347)
T KOG0647|consen  185 NPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP--KDNFTFKCHRSTNSVNDDVYAVNSIAFHPV  262 (347)
T ss_pred             CCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc--cCceeEEEeccCCCCCCceEEecceEeecc
Confidence            76543   33345567888887665  779999999999999887533  2233444443         35677788754


Q ss_pred             --EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEE
Q 016224          285 --KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLS  328 (393)
Q Consensus       285 --~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s  328 (393)
                        .|+|++.||++.+||-.....+.+.+.|..+|++..|+  |.+++-
T Consensus       263 hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaY  310 (347)
T KOG0647|consen  263 HGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAY  310 (347)
T ss_pred             cceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEE
Confidence              69999999999999999888999999999999999998  555553

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=2.5e-23  Score=192.03  Aligned_cols=235  Identities=27%  Similarity=0.471  Sum_probs=191.3

Q ss_pred             cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceE------EEE-eC-CCEEEEEcCCe
Q 016224          140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG------CMI-SE-GPWIFIGVTNF  211 (393)
Q Consensus       140 ~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~------~~~-~~-~~~l~~~~~~~  211 (393)
                      +++.+++.+|+..|..+++.+. ..++++|.||++++|+-..++.+.......+..      +.. .+ +++++.+.|..
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~   82 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT   82 (745)
T ss_pred             ceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence            4788899999999999988654 479999999999999987666555333222211      112 23 44555669999


Q ss_pred             EEEEECCCCcee-eecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc-CCEEEE
Q 016224          212 VKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG-ANKLYS  288 (393)
Q Consensus       212 i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s  288 (393)
                      |.+|...+...+ .+.+|...|.++....+ .+++|+.|.++++|....      +...+.+|+..|.++..- .+.++|
T Consensus        83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~------l~~~l~gH~asVWAv~~l~e~~~vT  156 (745)
T KOG0301|consen   83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE------LVYSLQGHTASVWAVASLPENTYVT  156 (745)
T ss_pred             EEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchh------hhcccCCcchheeeeeecCCCcEEe
Confidence            999999998887 89999999999998777 889999999999997654      345689999999998764 558999


Q ss_pred             ecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCC-EEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCC
Q 016224          289 GSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ-FLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDS  367 (393)
Q Consensus       289 g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  367 (393)
                      |+.|.+|++|.-  ++.+++|.+|...|..+++-+. .+++++.||.|++|++ +++.+....+|...  +.++...++.
T Consensus       157 gsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~--vYsis~~~~~  231 (745)
T KOG0301|consen  157 GSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNF--VYSISMALSD  231 (745)
T ss_pred             ccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceE--EEEEEecCCC
Confidence            999999999985  7889999999999999998854 9999999999999999 67777777776654  7777654444


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCc
Q 016224          368 EGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       368 ~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      .   .++++++|++++||+...
T Consensus       232 ~---~Ivs~gEDrtlriW~~~e  250 (745)
T KOG0301|consen  232 G---LIVSTGEDRTLRIWKKDE  250 (745)
T ss_pred             C---eEEEecCCceEEEeecCc
Confidence            4   899999999999999763

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=6.6e-23  Score=189.75  Aligned_cols=271  Identities=17%  Similarity=0.231  Sum_probs=206.1

Q ss_pred             ceEEeeEec--CcEEEecCCCeEEEEECCCCcEE--EEEecCCcCCEEEEEecCC-----------CCEEEEEeCCCcEE
Q 016224          111 DILCRNWVQ--GNCMYGEKCKFLHSWTVGDGFKL--LTQLEGHQKVVSGITLPSG-----------SDKLYSGSKDETVR  175 (393)
Q Consensus       111 ~i~c~~~~~--~~~~~g~~dg~i~vwd~~~~~~~--~~~l~~h~~~I~~i~~s~~-----------~~~l~s~s~dg~v~  175 (393)
                      +...+.|.+  +.+...-.|..|+|||+.+-.+.  ...+--|...|+++.--|-           ...++|++.|++|+
T Consensus       326 D~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR  405 (1080)
T KOG1408|consen  326 DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR  405 (1080)
T ss_pred             ceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence            445556663  34556788999999999865222  2344459999998876551           13589999999999


Q ss_pred             EEECCCCeEEEEEe--------------------------------------c--CCceEEEEeCCCEEEEE-cCCeEEE
Q 016224          176 VWDCASGQCAGVIN--------------------------------------L--GGEVGCMISEGPWIFIG-VTNFVKA  214 (393)
Q Consensus       176 iwd~~~~~~~~~~~--------------------------------------~--~~~~~~~~~~~~~l~~~-~~~~i~v  214 (393)
                      +||++.+..-..+.                                      .  +-...++.+++++|++| .-|.+++
T Consensus       406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrV  485 (1080)
T KOG1408|consen  406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRV  485 (1080)
T ss_pred             EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEE
Confidence            99997532111110                                      0  00123445789999998 5569999


Q ss_pred             EECCCCcee-eecCCCCcEEEEEEeCC-----EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEE----------
Q 016224          215 WNTQTNTDL-SLSGPVGQVYAMAVGND-----LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS----------  278 (393)
Q Consensus       215 ~d~~~~~~~-~~~~~~~~v~~l~~~~~-----~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~----------  278 (393)
                      |++..-+.. .+..|..+|.|+.|+..     +|++++.|.-|.|||....   +.++.++.+|...|++          
T Consensus       486 y~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn---y~l~qtld~HSssITsvKFa~~gln~  562 (1080)
T KOG1408|consen  486 YDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN---YDLVQTLDGHSSSITSVKFACNGLNR  562 (1080)
T ss_pred             EEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc---cchhhhhcccccceeEEEEeecCCce
Confidence            999988776 88899999999999754     8999999999999998654   2444444444444433          


Q ss_pred             ---------------------------------------EEEcC--CEEEEecCCCcEEEeeCCCcceeeEecc---Ccc
Q 016224          279 ---------------------------------------LVVGA--NKLYSGSMDNSIRVWNLETLQCIQTLTE---HTS  314 (393)
Q Consensus       279 ---------------------------------------l~~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~---~~~  314 (393)
                                                             ++.++  +++++++.|..|+|||+++++..+.|++   |.+
T Consensus       563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG  642 (1080)
T KOG1408|consen  563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG  642 (1080)
T ss_pred             EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence                                                   33332  3688999999999999999999999985   545


Q ss_pred             ceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          315 VVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       315 ~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      ....+..+  +-||++...|.++.++|..+++++....+|.+.  |+.+.|.+|-.   .|++.+.||.|.||.++.
T Consensus       643 ~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~--VTG~kF~nDCk---HlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  643 DLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA--VTGVKFLNDCK---HLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             ceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchh--eeeeeecccch---hheeecCCceEEEEECch
Confidence            55555555  789999999999999999999999999988876  99999988766   899999999999999975

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.92  E-value=3.9e-24  Score=180.14  Aligned_cols=221  Identities=17%  Similarity=0.288  Sum_probs=173.3

Q ss_pred             EEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEE---EEEecCCceEEEEeCCCEEEEEcCCeEEEEECCC
Q 016224          143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA---GVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQT  219 (393)
Q Consensus       143 ~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~  219 (393)
                      ...+..|++++.+-+|++||.++|||+.|..|+|.|++..-..   ..+..+                        +.+.
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~------------------------~~qa  160 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISG------------------------DTQA  160 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccC------------------------Cccc
Confidence            3567789999999999999999999999999999998732111   011000                        0111


Q ss_pred             C-c-eeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCC
Q 016224          220 N-T-DLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDN  293 (393)
Q Consensus       220 ~-~-~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg  293 (393)
                      . . ..++..|.++|+++.|+|.  +|++++.|++|++||+.....  +..........+|.+++|.  |++|+.|....
T Consensus       161 ~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~sa--KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp  238 (430)
T KOG0640|consen  161 RHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSA--KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHP  238 (430)
T ss_pred             CCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHH--HHHHHHhhccceeeeEeecCCCceEEEecCCC
Confidence            1 1 1267889999999999998  999999999999999986532  1112222234567777764  78999999999


Q ss_pred             cEEEeeCCCcceeeEe---ccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCC
Q 016224          294 SIRVWNLETLQCIQTL---TEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE  368 (393)
Q Consensus       294 ~i~iwd~~~~~~~~~~---~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  368 (393)
                      ++++||+++.++...-   ..|.+.|+++.++  +++.++++.||.|+|||--+.+++..+........|.+..|..++.
T Consensus       239 ~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k  318 (430)
T KOG0640|consen  239 TLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK  318 (430)
T ss_pred             ceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe
Confidence            9999999998886554   4689999999998  7899999999999999998888888777666666677777766544


Q ss_pred             CCcEEEEEeCCCeEEEEeCCceee
Q 016224          369 GKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       369 ~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                         +|++++.|..|++|++.++.+
T Consensus       319 ---yiLsSG~DS~vkLWEi~t~R~  339 (430)
T KOG0640|consen  319 ---YILSSGKDSTVKLWEISTGRM  339 (430)
T ss_pred             ---EEeecCCcceeeeeeecCCce
Confidence               999999999999999999865

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.2e-22  Score=179.76  Aligned_cols=257  Identities=21%  Similarity=0.361  Sum_probs=199.7

Q ss_pred             CeEEEEECCCCcEEEEEecCC-cCCEEEEEecCCCCEEEEEe-CCCcEEEEECCCCeEEE-EEecCCceEEEE--eCCCE
Q 016224          129 KFLHSWTVGDGFKLLTQLEGH-QKVVSGITLPSGSDKLYSGS-KDETVRVWDCASGQCAG-VINLGGEVGCMI--SEGPW  203 (393)
Q Consensus       129 g~i~vwd~~~~~~~~~~l~~h-~~~I~~i~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~--~~~~~  203 (393)
                      ..+.+||+.+| ..+.++++- ...-.++..- ...+++++. .-..|.+|.+....... .+-.++.+.++.  +.|.+
T Consensus        18 ~~~~~~dl~TG-t~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~   95 (476)
T KOG0646|consen   18 INCIVWDLRTG-TSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYF   95 (476)
T ss_pred             cceeEEecCCC-ceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceE
Confidence            35899999999 555566654 2222222221 235666654 34689999997765444 555666777765  57889


Q ss_pred             EEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccC-----CccccCceeecCcee
Q 016224          204 IFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT-----TNCFEPAASLKGHSL  274 (393)
Q Consensus       204 l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~-----~~~~~~~~~~~~~~~  274 (393)
                      +++| ..+.|++|.+.+|..+ .+..|-..|+++.|+.|  +|++|+.||.|.+|.+..-     ....++...+..|.-
T Consensus        96 l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htl  175 (476)
T KOG0646|consen   96 LLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTL  175 (476)
T ss_pred             EEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcc
Confidence            9988 8899999999999988 77899999999999988  9999999999999987542     113467888999999


Q ss_pred             eEEEEEEcC----CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCc----
Q 016224          275 AVVSLVVGA----NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSG----  344 (393)
Q Consensus       275 ~v~~l~~~~----~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~----  344 (393)
                      +|+.+....    .+|++++.|.++++||+..+.++.++. ....+.+++.+  +..++.|+.+|.|.+.++....    
T Consensus       176 sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~  254 (476)
T KOG0646|consen  176 SITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSA  254 (476)
T ss_pred             eeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccc
Confidence            999998862    389999999999999999999988886 45577888888  6789999999999998775432    


Q ss_pred             ------------ceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          345 ------------NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       345 ------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                                  ....+.+|.....|++++.+.|+.   +|++|+.||.|+|||+.+..
T Consensus       255 ~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt---lLlSGd~dg~VcvWdi~S~Q  310 (476)
T KOG0646|consen  255 GVNQKGRHEENTQINVLVGHENESAITCLAISTDGT---LLLSGDEDGKVCVWDIYSKQ  310 (476)
T ss_pred             cccccccccccceeeeeccccCCcceeEEEEecCcc---EEEeeCCCCCEEEEecchHH
Confidence                        234455566656788888887776   99999999999999998754

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.91  E-value=9.3e-22  Score=185.17  Aligned_cols=277  Identities=17%  Similarity=0.263  Sum_probs=214.3

Q ss_pred             eEEeeEec---CcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 016224          112 ILCRNWVQ---GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI  188 (393)
Q Consensus       112 i~c~~~~~---~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~  188 (393)
                      |+.+..-+   +.++.|+..|.+.+|++.++ +.+.+++++.+.|+++.=+|-=+.+|.|..+|+|.|+++..++.+.++
T Consensus       162 Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~-K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF  240 (910)
T KOG1539|consen  162 ITALLHPSTYLNKIVVGSSQGRLQLWNVRTG-KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF  240 (910)
T ss_pred             eeeEecchhheeeEEEeecCCcEEEEEeccC-cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence            66655432   46788999999999999999 999999999999999999998889999999999999999999999999


Q ss_pred             ecC-CceEEEEe--CCCE-EEEE-cCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccC
Q 016224          189 NLG-GEVGCMIS--EGPW-IFIG-VTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT  259 (393)
Q Consensus       189 ~~~-~~~~~~~~--~~~~-l~~~-~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~  259 (393)
                      +.. +.+..+..  ||.. ++++ ..|.+.+||++..+.+  ....|.+.|....|-+.  .+++++.|..+++|=..++
T Consensus       241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~  320 (910)
T KOG1539|consen  241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG  320 (910)
T ss_pred             EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence            986 77766653  5654 4455 4579999999998877  44478788888888766  8888888888777744311


Q ss_pred             Ccc----------------------------------------------------------------c-------cCc--
Q 016224          260 TNC----------------------------------------------------------------F-------EPA--  266 (393)
Q Consensus       260 ~~~----------------------------------------------------------------~-------~~~--  266 (393)
                      ...                                                                +       .++  
T Consensus       321 dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~  400 (910)
T KOG1539|consen  321 DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE  400 (910)
T ss_pred             CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence            000                                                                0       000  


Q ss_pred             ------------------------------------eeec-----CceeeEEEE--EEcCCEEEEecCCCcEEEeeCCCc
Q 016224          267 ------------------------------------ASLK-----GHSLAVVSL--VVGANKLYSGSMDNSIRVWNLETL  303 (393)
Q Consensus       267 ------------------------------------~~~~-----~~~~~v~~l--~~~~~~l~sg~~dg~i~iwd~~~~  303 (393)
                                                          ..+.     .....+.++  ++.|++.+.|+..|.|.+|++++|
T Consensus       401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG  480 (910)
T KOG1539|consen  401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG  480 (910)
T ss_pred             eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC
Confidence                                                0000     011233444  445899999999999999999999


Q ss_pred             ceeeEe---ccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEE----------------------------
Q 016224          304 QCIQTL---TEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTY----------------------------  350 (393)
Q Consensus       304 ~~~~~~---~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------------------------  350 (393)
                      -...+|   ..|..+|+.++.+  ++.+++++.+|-+++||..+...+..+.                            
T Consensus       481 i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~v  560 (910)
T KOG1539|consen  481 IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRV  560 (910)
T ss_pred             eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEE
Confidence            999998   5899999999999  6789999999999999987543111100                            


Q ss_pred             --e---------ecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          351 --T---------HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       351 --~---------~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                        .         ..+...+++++|+|++.   +|++++.|++|++||++++.+
T Consensus       561 vD~~t~kvvR~f~gh~nritd~~FS~Dgr---WlisasmD~tIr~wDlpt~~l  610 (910)
T KOG1539|consen  561 VDVVTRKVVREFWGHGNRITDMTFSPDGR---WLISASMDSTIRTWDLPTGTL  610 (910)
T ss_pred             EEchhhhhhHHhhccccceeeeEeCCCCc---EEEEeecCCcEEEEeccCcce
Confidence              0         11335688999988776   999999999999999999876

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=5.7e-23  Score=182.78  Aligned_cols=232  Identities=21%  Similarity=0.314  Sum_probs=182.4

Q ss_pred             cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe---cCCceEEEEeCCCEEEEE-cCCeEEEEECCCCcee-e
Q 016224          150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN---LGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-S  224 (393)
Q Consensus       150 ~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~  224 (393)
                      .+.|++|+|+|...+=+.....-.|.||+..+....+++.   -.....++-++|+++++| ..|.|++||+.+...+ .
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~  105 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ  105 (487)
T ss_pred             cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH
Confidence            4689999999965433222333589999988876665443   222334556799999998 6789999996665444 8


Q ss_pred             ecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC---CEEEEecCCCcEEEe
Q 016224          225 LSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVW  298 (393)
Q Consensus       225 ~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~iw  298 (393)
                      +..|..+|..+.|++.   .|++|+.|+.+++||+.+..    ....+.+|+..|.+.++.+   .++++|+.||+|++|
T Consensus       106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~----v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~  181 (487)
T KOG0310|consen  106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY----VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW  181 (487)
T ss_pred             HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE----EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence            8999999999999986   89999999999999999873    3568899999999999863   489999999999999


Q ss_pred             eCCCc-ceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEe-ecCCccEEEEEeeeCCCCCcEEE
Q 016224          299 NLETL-QCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLL  374 (393)
Q Consensus       299 d~~~~-~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~  374 (393)
                      |++.. ..+.++. |..+|.++.+-  |..+++++ ...|+|||+.++.++..... |..  .|+++.+..++.   .|+
T Consensus       182 DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~K--tVTcL~l~s~~~---rLl  254 (487)
T KOG0310|consen  182 DTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNK--TVTCLRLASDST---RLL  254 (487)
T ss_pred             EeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccc--eEEEEEeecCCc---eEe
Confidence            99987 6666665 88899888886  46777765 45899999987766544443 444  588888876554   899


Q ss_pred             EEeCCCeEEEEeCCceee
Q 016224          375 CSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       375 s~s~dg~I~iwd~~s~~l  392 (393)
                      +++-|+.|++||+.+.++
T Consensus       255 S~sLD~~VKVfd~t~~Kv  272 (487)
T KOG0310|consen  255 SGSLDRHVKVFDTTNYKV  272 (487)
T ss_pred             ecccccceEEEEccceEE
Confidence            999999999999888765

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.91  E-value=8.5e-23  Score=197.62  Aligned_cols=257  Identities=20%  Similarity=0.251  Sum_probs=196.5

Q ss_pred             eecceEEeeEecCcEE--Eec--CCCeEEEEECCC-----------CcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCC
Q 016224          108 IKTDILCRNWVQGNCM--YGE--KCKFLHSWTVGD-----------GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE  172 (393)
Q Consensus       108 ~~~~i~c~~~~~~~~~--~g~--~dg~i~vwd~~~-----------~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg  172 (393)
                      +...|..+..+++...  +|+  .|+.++||+.+.           -.+.+.++..|.+.|+|+.|++||++||+|+.|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~   91 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR   91 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence            3446889999988544  577  788899998751           1245667788999999999999999999999999


Q ss_pred             cEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCc
Q 016224          173 TVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGA  250 (393)
Q Consensus       173 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~  250 (393)
                      .|.||+......-..+..               .|....+.-|.    ....+.+|...|..++|+|+  +|++++.|++
T Consensus        92 ~v~iW~~~~~~~~~~fgs---------------~g~~~~vE~wk----~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dns  152 (942)
T KOG0973|consen   92 LVMIWERAEIGSGTVFGS---------------TGGAKNVESWK----VVSILRGHDSDVLDVNWSPDDSLLVSVSLDNS  152 (942)
T ss_pred             eEEEeeecccCCcccccc---------------cccccccceee----EEEEEecCCCccceeccCCCccEEEEecccce
Confidence            999999875110000100               00011111121    12267889999999999998  9999999999


Q ss_pred             EEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcce-----------------------
Q 016224          251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQC-----------------------  305 (393)
Q Consensus       251 I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~-----------------------  305 (393)
                      |.+||..+.    +.+..+.+|...|..+.||  |++|++-+.|++|+||++.+...                       
T Consensus       153 Viiwn~~tF----~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS  228 (942)
T KOG0973|consen  153 VIIWNAKTF----ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS  228 (942)
T ss_pred             EEEEccccc----eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC
Confidence            999998875    7788999999999999998  67999999999999999654211                       


Q ss_pred             -----------------------------eeEeccCccceEEEEEcC-------C------------EEEEEeCCCcEEE
Q 016224          306 -----------------------------IQTLTEHTSVVMSLLCWD-------Q------------FLLSCSLDKTIKV  337 (393)
Q Consensus       306 -----------------------------~~~~~~~~~~v~~l~~~~-------~------------~l~s~s~dg~i~i  337 (393)
                                                   -..|-+|..++.++.|++       +            .+|+|+.|++|.|
T Consensus       229 PDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV  308 (942)
T KOG0973|consen  229 PDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV  308 (942)
T ss_pred             CCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEE
Confidence                                         122457899999999972       2            5789999999999


Q ss_pred             EEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          338 WFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       338 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      |.....+.+..... -....|..++|+|++-   .|+.+|.||+|.+..++..+
T Consensus       309 W~T~~~RPl~vi~~-lf~~SI~DmsWspdG~---~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  309 WNTALPRPLFVIHN-LFNKSIVDMSWSPDGF---SLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             EecCCCCchhhhhh-hhcCceeeeeEcCCCC---eEEEEecCCeEEEEEcchHH
Confidence            99866665544433 3345699999998876   79999999999999987654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.91  E-value=3.7e-24  Score=175.23  Aligned_cols=234  Identities=18%  Similarity=0.213  Sum_probs=186.1

Q ss_pred             cceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224          105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      ...|+..|.......+-  ..+++.|=+-+|||.-++ ..++.++ |+..|.+++|+.|.++|+||+.+..++|||++..
T Consensus        55 feghkgavw~~~l~~na~~aasaaadftakvw~a~tg-delhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p  132 (334)
T KOG0278|consen   55 FEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG-DELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP  132 (334)
T ss_pred             eeccCcceeeeecCchhhhhhhhcccchhhhhhhhhh-hhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCC
Confidence            45577788777776553  346888999999999999 7777776 9999999999999999999999999999999875


Q ss_pred             eE-EEEEe-cCCceEE--EE-eCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEe
Q 016224          183 QC-AGVIN-LGGEVGC--MI-SEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKF  256 (393)
Q Consensus       183 ~~-~~~~~-~~~~~~~--~~-~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~  256 (393)
                      +. ...+. +...+..  +. .+..+|.++.|++|++||.+++..+........|+++.++++ .+++....+.|.+||.
T Consensus       133 ~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwda  212 (334)
T KOG0278|consen  133 KAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDA  212 (334)
T ss_pred             CCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEecc
Confidence            42 22232 2233332  22 355555567889999999999999987788889999999998 8888888999999998


Q ss_pred             ccCCccccCceeecCceeeEEE--EEEcCCEEEEecCCCcEEEeeCCCcceeeEe-ccCccceEEEEEc--CCEEEEEeC
Q 016224          257 NVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVWNLETLQCIQTL-TEHTSVVMSLLCW--DQFLLSCSL  331 (393)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~--l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~~--~~~l~s~s~  331 (393)
                      .+-    .+++..+ -...|.+  +.++.+.+++|+.|..++.||..+++.+..+ ++|.++|.++.|+  |...++||.
T Consensus       213 ksf----~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE  287 (334)
T KOG0278|consen  213 KSF----GLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSE  287 (334)
T ss_pred             ccc----cceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCC
Confidence            775    4444433 2334444  4445568999999999999999999999996 8999999999999  678999999


Q ss_pred             CCcEEEEEcCCCcc
Q 016224          332 DKTIKVWFATDSGN  345 (393)
Q Consensus       332 dg~i~iwd~~~~~~  345 (393)
                      ||+|+||.....+.
T Consensus       288 DGTirlWQt~~~~~  301 (334)
T KOG0278|consen  288 DGTIRLWQTTPGKT  301 (334)
T ss_pred             CceEEEEEecCCCc
Confidence            99999998764443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2e-21  Score=179.22  Aligned_cols=278  Identities=15%  Similarity=0.219  Sum_probs=214.3

Q ss_pred             ceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCc-CCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224          106 AVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~-~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      .-...+|+|++|+..  .++.+-.+|.|.+|++..++-+...+.++. ..|.+|+|+ ++.+|++.+.+|.|.-||+.++
T Consensus        22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~l  100 (691)
T KOG2048|consen   22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTL  100 (691)
T ss_pred             eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccC
Confidence            344569999999854  456788999999999999877788888875 789999999 5668999999999999999999


Q ss_pred             eEEEEEecCCce---EEEEeCCCEEEEE-cCCeEEEEECCCCcee---eecCCCCcEEEEEEeCC--EEEEEeCCCcEEE
Q 016224          183 QCAGVINLGGEV---GCMISEGPWIFIG-VTNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGND--LLFAGTQDGAILA  253 (393)
Q Consensus       183 ~~~~~~~~~~~~---~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~---~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~v  253 (393)
                      +....+...+..   .++.+.+..+++| .||.+..++...++..   .+....+.|.+++|+++  .+++|+.||.|++
T Consensus       101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri  180 (691)
T KOG2048|consen  101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI  180 (691)
T ss_pred             ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence            998888766543   2334677778877 7788888888887765   44556789999999998  6999999999999


Q ss_pred             EEeccCCccccCcee---ec-CceeeEEEEEE-cCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEE
Q 016224          254 WKFNVTTNCFEPAAS---LK-GHSLAVVSLVV-GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFL  326 (393)
Q Consensus       254 wd~~~~~~~~~~~~~---~~-~~~~~v~~l~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l  326 (393)
                      ||...+.........   +. ....-|.++.+ ..+.|++|..-|+|++||...+.+++.+..|.+.|.+++..  ++++
T Consensus       181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~v  260 (691)
T KOG2048|consen  181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRV  260 (691)
T ss_pred             EEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeE
Confidence            999887542211111   11 13334555554 47799999999999999999999999999999999999988  5799


Q ss_pred             EEEeCCCcEEEEEcCCCcceEE--EEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          327 LSCSLDKTIKVWFATDSGNLEV--TYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       327 ~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      ++++.|++|.-|...+......  .....+...+.+++..++     .|++|+.|..+.+=....
T Consensus       261 fsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-----~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  261 FSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-----ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             EEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-----eEEecceeeEEEEccccc
Confidence            9999999999998866544111  111222334777766554     799999999888755543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.3e-20  Score=159.58  Aligned_cols=270  Identities=12%  Similarity=0.120  Sum_probs=204.2

Q ss_pred             ecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC--CCcEEEEECCCCeE
Q 016224          109 KTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK--DETVRVWDCASGQC  184 (393)
Q Consensus       109 ~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~--dg~v~iwd~~~~~~  184 (393)
                      ...|.++.|++++  +++.+.|..|+|||..++ +.++++..++-.|..++|......++.++.  |.+|+.-++.+.+.
T Consensus        14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g-~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky   92 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG-KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY   92 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCCeEEEEEcCCC-ceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence            3488999999774  445788889999999999 889999989999999999776666776666  89999999999999


Q ss_pred             EEEEecCCceEE-E--Ee-CCCEEEEEcCCeEEEEECCCCceee-ecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEec
Q 016224          185 AGVINLGGEVGC-M--IS-EGPWIFIGVTNFVKAWNTQTNTDLS-LSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN  257 (393)
Q Consensus       185 ~~~~~~~~~~~~-~--~~-~~~~l~~~~~~~i~v~d~~~~~~~~-~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~  257 (393)
                      ++.+..+..... +  .+ +..+|.++.|++|++||++..+.+- +.....+  .++|+|+  ++|++.....|++||++
T Consensus        93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~R  170 (311)
T KOG1446|consen   93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDLR  170 (311)
T ss_pred             EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEec
Confidence            999998765433 3  23 5556666799999999999777663 3222233  4567777  77777777799999999


Q ss_pred             cCCccccCceeec---CceeeEEEEEE--cCCEEEEecCCCcEEEeeCCCcceeeEeccCccce---EEEEE--cCCEEE
Q 016224          258 VTTNCFEPAASLK---GHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVV---MSLLC--WDQFLL  327 (393)
Q Consensus       258 ~~~~~~~~~~~~~---~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v---~~l~~--~~~~l~  327 (393)
                      .-..  .+...+.   +.......+.|  +|++|+.++..+.+++.|.-+|..+.++..+...-   .+..|  ++++++
T Consensus       171 s~dk--gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl  248 (311)
T KOG1446|consen  171 SFDK--GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVL  248 (311)
T ss_pred             ccCC--CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEE
Confidence            8643  2222222   33555666666  47799999999999999999999999998765433   33344  478999


Q ss_pred             EEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          328 SCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       328 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      +|+.||+|.+|+++++.++..+.+. ....+.++.|.|-..   +++++  +..+.+|=...
T Consensus       249 ~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~---mf~sa--~s~l~fw~p~~  304 (311)
T KOG1446|consen  249 SGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYA---MFVSA--SSNLVFWLPDE  304 (311)
T ss_pred             EecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCcee---eeeec--CceEEEEeccc
Confidence            9999999999999999988887774 334577777877644   55555  55788886543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=2.6e-22  Score=169.72  Aligned_cols=256  Identities=21%  Similarity=0.333  Sum_probs=198.7

Q ss_pred             CcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-ceEEEE
Q 016224          120 GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG-EVGCMI  198 (393)
Q Consensus       120 ~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~  198 (393)
                      ..+++...++++.       +++++.+.+|++.|+.++.......+.+++.|.+.+||.++++.|+..+..+. .+.++.
T Consensus       125 srivssFk~~t~~-------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsik  197 (481)
T KOG0300|consen  125 SRIVSSFKDGTVK-------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIK  197 (481)
T ss_pred             chheeeecCCcee-------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEE
Confidence            3444454555532       47888999999999999998888899999999999999999999999998764 444443


Q ss_pred             --eCCCEEEEE-cCCeEEEEE------CCCCc-----------------------------------eeeecCCCCcEEE
Q 016224          199 --SEGPWIFIG-VTNFVKAWN------TQTNT-----------------------------------DLSLSGPVGQVYA  234 (393)
Q Consensus       199 --~~~~~l~~~-~~~~i~v~d------~~~~~-----------------------------------~~~~~~~~~~v~~  234 (393)
                        +.+.+++++ .|++-+||.      +....                                   ...+.+|...|.+
T Consensus       198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a  277 (481)
T KOG0300|consen  198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA  277 (481)
T ss_pred             eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence              455566554 778888886      22110                                   1256678888888


Q ss_pred             EEEeC--CEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCC-cceeeEe
Q 016224          235 MAVGN--DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLET-LQCIQTL  309 (393)
Q Consensus       235 l~~~~--~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~-~~~~~~~  309 (393)
                      ..|-.  +.+++++.|.+..+||++++    +++..+.+|....+.++-.++  ++++.+.|.+.++||++. -..+..|
T Consensus       278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtg----e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VF  353 (481)
T KOG0300|consen  278 CDWLAGGQQMVTASWDRTANLWDVETG----EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVF  353 (481)
T ss_pred             hhhhcCcceeeeeeccccceeeeeccC----ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeee
Confidence            87743  48999999999999999998    778899999999888777654  688999999999999984 4457889


Q ss_pred             ccCccceEEEEEc-CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          310 TEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       310 ~~~~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      ++|...|+++.|. +..+++|+.|.+|+|||+++.............  +..++.+   .+.++|+.--.+..|++||+.
T Consensus       354 QGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~--~NRvavs---~g~~iIAiPhDNRqvRlfDln  428 (481)
T KOG0300|consen  354 QGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSP--ANRVAVS---KGHPIIAIPHDNRQVRLFDLN  428 (481)
T ss_pred             cccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCCc--cceeEee---cCCceEEeccCCceEEEEecC
Confidence            9999999999999 889999999999999999987654443333333  4444443   344488888888999999997


Q ss_pred             cee
Q 016224          389 SVI  391 (393)
Q Consensus       389 s~~  391 (393)
                      ...
T Consensus       429 G~R  431 (481)
T KOG0300|consen  429 GNR  431 (481)
T ss_pred             CCc
Confidence            543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=2e-22  Score=173.97  Aligned_cols=224  Identities=18%  Similarity=0.330  Sum_probs=179.2

Q ss_pred             EecCCCeEEEEECCC---------------CcEEEEEecCCcCCEEEEEecCC-CCEEEEEeCCCcEEEEECCCCeEEEE
Q 016224          124 YGEKCKFLHSWTVGD---------------GFKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGV  187 (393)
Q Consensus       124 ~g~~dg~i~vwd~~~---------------~~~~~~~l~~h~~~I~~i~~s~~-~~~l~s~s~dg~v~iwd~~~~~~~~~  187 (393)
                      +-+..|.|+||++..               .++++.++.+|...=+.|+|||- ...|+||.--+.|++|...++.-   
T Consensus       170 swse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W---  246 (440)
T KOG0302|consen  170 SWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSW---  246 (440)
T ss_pred             eecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCce---
Confidence            345678899999752               24678899999999999999993 23588888888999999877642   


Q ss_pred             EecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCcccc
Q 016224          188 INLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFE  264 (393)
Q Consensus       188 ~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~  264 (393)
                                                  .+..   ..+.+|...|-.|+|+|.   .|++++.||+|+|||++.+..  +
T Consensus       247 ----------------------------~vd~---~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~--~  293 (440)
T KOG0302|consen  247 ----------------------------KVDQ---RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK--K  293 (440)
T ss_pred             ----------------------------eecC---ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc--c
Confidence                                        1111   234569999999999986   999999999999999998754  3


Q ss_pred             CceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCC---cceeeEeccCccceEEEEEc---CCEEEEEeCCCcEE
Q 016224          265 PAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLET---LQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIK  336 (393)
Q Consensus       265 ~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~  336 (393)
                      .....+.|...|..|+|+.+  +|++|+.||+++|||+++   ++++.+|+.|..+|++|.|+   ...|++++.|.+|.
T Consensus       294 ~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qit  373 (440)
T KOG0302|consen  294 AAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQIT  373 (440)
T ss_pred             ceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEE
Confidence            34445889999999999854  799999999999999986   67889999999999999999   56899999999999


Q ss_pred             EEEcCCCc----------------ceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          337 VWFATDSG----------------NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       337 iwd~~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                      |||+.-..                ..+.++.|.....+-.+.|++--++  +|++.+.|| +.||.
T Consensus       374 iWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG--~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  374 IWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPG--LLVSTAIDG-FNVFK  436 (440)
T ss_pred             EEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCC--eEEEecccc-eeEEE
Confidence            99986321                1234556666666788899887776  889888888 45554

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=8.8e-22  Score=164.95  Aligned_cols=284  Identities=19%  Similarity=0.217  Sum_probs=209.2

Q ss_pred             CCcccccceeecceEEeeEecC---cEEEecCCCeEEEEECCCCc-----------EEE---EEecCCcCCEEEEEecC-
Q 016224           99 NSNINNRAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDGF-----------KLL---TQLEGHQKVVSGITLPS-  160 (393)
Q Consensus        99 ~~~~~~~~~~~~~i~c~~~~~~---~~~~g~~dg~i~vwd~~~~~-----------~~~---~~l~~h~~~I~~i~~s~-  160 (393)
                      +..-++...|.+.|..++..+.   ..++|+.||.|.+||++...           +++   ..-.+|+-.|.++.|-| 
T Consensus        33 n~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~  112 (397)
T KOG4283|consen   33 NNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI  112 (397)
T ss_pred             cCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee
Confidence            3334556667778888877533   45689999999999998431           010   11146888999999987 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEE-----EEeCCCEEEEEcCC-eEEEEECCCCcee-eecCCCCcEE
Q 016224          161 GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC-----MISEGPWIFIGVTN-FVKAWNTQTNTDL-SLSGPVGQVY  233 (393)
Q Consensus       161 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~-~i~v~d~~~~~~~-~~~~~~~~v~  233 (393)
                      |..++.+++.|.+++|||..+.+....|+.++.+-.     +.....++++|.++ .|++.|+..+..- .+.+|.+.|.
T Consensus       113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl  192 (397)
T KOG4283|consen  113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL  192 (397)
T ss_pred             cCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence            677899999999999999999999999988876533     22356677788555 9999999999877 8999999999


Q ss_pred             EEEEeCC---EEEEEeCCCcEEEEEeccCCcccc-----------CceeecCceeeEEEEEEc--CCEEEEecCCCcEEE
Q 016224          234 AMAVGND---LLFAGTQDGAILAWKFNVTTNCFE-----------PAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRV  297 (393)
Q Consensus       234 ~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~-----------~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~i  297 (393)
                      ++.|+|.   .|++|+.||.|++||++....++.           ..+.-..|.+.+..++|.  +.++++.+.|..+++
T Consensus       193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~  272 (397)
T KOG4283|consen  193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV  272 (397)
T ss_pred             EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence            9999997   899999999999999987643221           122244688889999985  668999999999999


Q ss_pred             eeCCCcceeeE-ec--cCccce-EE--EE-EcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCC
Q 016224          298 WNLETLQCIQT-LT--EHTSVV-MS--LL-CWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGK  370 (393)
Q Consensus       298 wd~~~~~~~~~-~~--~~~~~v-~~--l~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  370 (393)
                      |+..+|+.... +-  .|...+ ..  +. .+...++---.++.+.++.+-++..+..+..|..  .+.+..+-|+-+  
T Consensus       273 wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k--~i~c~~~~~~fq--  348 (397)
T KOG4283|consen  273 WNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLK--RINCAAYRPDFE--  348 (397)
T ss_pred             eecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccc--eeeEEeecCchh--
Confidence            99987753211 10  111111 01  11 1123344444568899999888888888877743  477777777665  


Q ss_pred             cEEEEEeCCCeEEEEeC
Q 016224          371 PVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       371 ~~l~s~s~dg~I~iwd~  387 (393)
                       ...+|+.|+.|..|-.
T Consensus       349 -~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  349 -QCFTGDMNGNIYMWSP  364 (397)
T ss_pred             -hhhccccCCccccccc
Confidence             6899999999999975

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=9.5e-23  Score=179.37  Aligned_cols=245  Identities=19%  Similarity=0.261  Sum_probs=180.8

Q ss_pred             cccceeec----ceEEeeEec--------C-cEEEecCCCeEEEEECCC--CcEEEEE------------------ecCC
Q 016224          103 NNRAVIKT----DILCRNWVQ--------G-NCMYGEKCKFLHSWTVGD--GFKLLTQ------------------LEGH  149 (393)
Q Consensus       103 ~~~~~~~~----~i~c~~~~~--------~-~~~~g~~dg~i~vwd~~~--~~~~~~~------------------l~~h  149 (393)
                      +.+.+|.-    .-.|++|..        + .++.|+.|..|.|||+.-  ...+..+                  -++|
T Consensus       163 nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gH  242 (463)
T KOG0270|consen  163 NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGH  242 (463)
T ss_pred             ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccc
Confidence            34455543    346888852        2 355799999999999861  1111111                  2379


Q ss_pred             cCCEEEEEecCC-CCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCC
Q 016224          150 QKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGP  228 (393)
Q Consensus       150 ~~~I~~i~~s~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~  228 (393)
                      +..|.+|+|... .+.|||||.|.+|++||+.++++..++                                     ..|
T Consensus       243 Tdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~-------------------------------------~~~  285 (463)
T KOG0270|consen  243 TDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSI-------------------------------------THH  285 (463)
T ss_pred             hHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceeh-------------------------------------hhc
Confidence            999999999764 578999999999999999999987655                                     357


Q ss_pred             CCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CCEEEEecCCCcEEEeeCCC
Q 016224          229 VGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLET  302 (393)
Q Consensus       229 ~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~  302 (393)
                      ...|.++.|++.   .|++|+.|++|.+.|.+..... ...-.   ..+.|-.++|+   .+.+++++.||+|+-+|+|.
T Consensus       286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s-~~~wk---~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~  361 (463)
T KOG0270|consen  286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS-GKEWK---FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRN  361 (463)
T ss_pred             CCceeEEEecCCCceEEEeccccceEEeeeccCcccc-CceEE---eccceEEEEecCCCceeEEEecCCceEEeeecCC
Confidence            789999999887   9999999999999999964221 11112   34567777776   45799999999999999997


Q ss_pred             -cceeeEeccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeC
Q 016224          303 -LQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN  378 (393)
Q Consensus       303 -~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~  378 (393)
                       ++++.++++|...|.+|+++   +.++++++.|+.|++|++..... .....+....++ -.+|.++....-+++.|+.
T Consensus       362 ~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~~~~~~r-l~c~~~~~~~a~~la~GG~  439 (463)
T KOG0270|consen  362 PGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEHSFKLGR-LHCFALDPDVAFTLAFGGE  439 (463)
T ss_pred             CCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccccccccc-eeecccCCCcceEEEecCc
Confidence             49999999999999999998   67999999999999999864432 222223222222 2233333333347889999


Q ss_pred             CCeEEEEeCCce
Q 016224          379 DNSVRFYDLPSV  390 (393)
Q Consensus       379 dg~I~iwd~~s~  390 (393)
                      .+.++|||+.+.
T Consensus       440 k~~~~vwd~~~~  451 (463)
T KOG0270|consen  440 KAVLRVWDIFTN  451 (463)
T ss_pred             cceEEEeecccC
Confidence            999999998764

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=1.5e-20  Score=170.28  Aligned_cols=260  Identities=17%  Similarity=0.185  Sum_probs=180.1

Q ss_pred             cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEE-EEEeCCCcEEEEECCCCeEEEEEecCCce--EEE
Q 016224          121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKL-YSGSKDETVRVWDCASGQCAGVINLGGEV--GCM  197 (393)
Q Consensus       121 ~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~~~~~--~~~  197 (393)
                      .+++++.|+.|++||..++ +.+..+..|.. +.+++|+|+++.+ ++++.++.|++||..+++.+..+......  ..+
T Consensus         3 ~~~s~~~d~~v~~~d~~t~-~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~   80 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATL-EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFAL   80 (300)
T ss_pred             EEEEecCCCEEEEEECCCC-ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEE
Confidence            3557889999999999988 77888876654 6789999999877 56678899999999999887776544332  334


Q ss_pred             EeCCCEEEEE--cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCC-cEEEEEeccCCccccCceee-cC
Q 016224          198 ISEGPWIFIG--VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDG-AILAWKFNVTTNCFEPAASL-KG  271 (393)
Q Consensus       198 ~~~~~~l~~~--~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg-~I~vwd~~~~~~~~~~~~~~-~~  271 (393)
                      .++++.++++  .++.+++||+.+.+.+........+..++++|+  +++++..++ .+.+||..+..    ..... ..
T Consensus        81 ~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~----~~~~~~~~  156 (300)
T TIGR03866        81 HPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE----IVDNVLVD  156 (300)
T ss_pred             CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe----EEEEEEcC
Confidence            4677776654  478999999998876644444445788999987  777777665 46777876642    22211 12


Q ss_pred             ceeeEEEEEEcCCEEE-EecCCCcEEEeeCCCcceeeEeccCcc-------ceEEEEEc--CCEEE-EEeCCCcEEEEEc
Q 016224          272 HSLAVVSLVVGANKLY-SGSMDNSIRVWNLETLQCIQTLTEHTS-------VVMSLLCW--DQFLL-SCSLDKTIKVWFA  340 (393)
Q Consensus       272 ~~~~v~~l~~~~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~l~~~--~~~l~-s~s~dg~i~iwd~  340 (393)
                      +......+..++.+|+ ++..++.|++||+++++.+..+..+..       ....+.++  +++++ +.+.++.|.+||+
T Consensus       157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~  236 (300)
T TIGR03866       157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA  236 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence            2222223334566665 455699999999999988776653211       12346666  56644 4455778999999


Q ss_pred             CCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEE-eCCCeEEEEeCCceee
Q 016224          341 TDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS-CNDNSVRFYDLPSVII  392 (393)
Q Consensus       341 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~-s~dg~I~iwd~~s~~l  392 (393)
                      .+.+....+. +.  ..+..+.|+|++.   +|+++ ..+|.|++||+.++++
T Consensus       237 ~~~~~~~~~~-~~--~~~~~~~~~~~g~---~l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       237 KTYEVLDYLL-VG--QRVWQLAFTPDEK---YLLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             CCCcEEEEEE-eC--CCcceEEECCCCC---EEEEEcCCCCeEEEEECCCCcE
Confidence            8765544332 22  3477888988765   77765 5699999999998874

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.90  E-value=6.8e-22  Score=176.93  Aligned_cols=277  Identities=15%  Similarity=0.196  Sum_probs=200.3

Q ss_pred             eeecceEEeeEecC--cEEEecCCCeEEEEECCCC---cEEEEEecC-CcCCEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 016224          107 VIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDG---FKLLTQLEG-HQKVVSGITLPSGSDKLYSGSKDETVRVWDCA  180 (393)
Q Consensus       107 ~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~---~~~~~~l~~-h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~  180 (393)
                      +|...|..+.+.+.  .+++|+.|.+|++||+...   .+..+.|+. ....|.+++|++.+..|+..+.....+|+|-.
T Consensus       165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd  244 (641)
T KOG0772|consen  165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD  244 (641)
T ss_pred             CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC
Confidence            45557888888655  5778999999999998733   222333332 34679999999999999988888899999976


Q ss_pred             CCeEEEEEecC----------Cce-----EEEEe--CCCEEEEEcCCeEEEEECCCCcee-------eecCCCCcEEEEE
Q 016224          181 SGQCAGVINLG----------GEV-----GCMIS--EGPWIFIGVTNFVKAWNTQTNTDL-------SLSGPVGQVYAMA  236 (393)
Q Consensus       181 ~~~~~~~~~~~----------~~~-----~~~~~--~~~~l~~~~~~~i~v~d~~~~~~~-------~~~~~~~~v~~l~  236 (393)
                      ..+.....+..          +++     .++.+  .+.+|.++.|+++++|++...+..       ...+..-.++.++
T Consensus       245 G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~  324 (641)
T KOG0772|consen  245 GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCA  324 (641)
T ss_pred             CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeee
Confidence            55544444322          222     22223  466888899999999999875532       1223456789999


Q ss_pred             EeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCcee--eEEEEEEc--CCEEEEecCCCcEEEeeCCCc-ceeeEe
Q 016224          237 VGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSL--AVVSLVVG--ANKLYSGSMDNSIRVWNLETL-QCIQTL  309 (393)
Q Consensus       237 ~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~--~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~-~~~~~~  309 (393)
                      |+++  +||+|+.||+|.+|+....... .....-..|..  .|++++|+  +++|++-+.|+++++||++.. +++.+.
T Consensus       325 ~nrdg~~iAagc~DGSIQ~W~~~~~~v~-p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~  403 (641)
T KOG0772|consen  325 WNRDGKLIAAGCLDGSIQIWDKGSRTVR-PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVR  403 (641)
T ss_pred             cCCCcchhhhcccCCceeeeecCCcccc-cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhh
Confidence            9998  9999999999999998554321 12233345665  78888885  889999999999999999974 455555


Q ss_pred             ccCc--cceEEEEEc--CCEEEEEeC------CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC
Q 016224          310 TEHT--SVVMSLLCW--DQFLLSCSL------DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND  379 (393)
Q Consensus       310 ~~~~--~~v~~l~~~--~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d  379 (393)
                      .+-.  .+-+.++|+  .++|++|..      .|.+.+||..+...+..+...  ...|..+.|+|.-.   .|+.|+.|
T Consensus       404 tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~--~aSvv~~~WhpkLN---Qi~~gsgd  478 (641)
T KOG0772|consen  404 TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS--TASVVRCLWHPKLN---QIFAGSGD  478 (641)
T ss_pred             cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--CceEEEEeecchhh---heeeecCC
Confidence            4322  234666777  457788764      577999999887777666554  45699999999765   68888899


Q ss_pred             CeEEEEeCCc
Q 016224          380 NSVRFYDLPS  389 (393)
Q Consensus       380 g~I~iwd~~s  389 (393)
                      |.+++|-=++
T Consensus       479 G~~~vyYdp~  488 (641)
T KOG0772|consen  479 GTAHVYYDPN  488 (641)
T ss_pred             CceEEEECcc
Confidence            9999875443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=2.3e-20  Score=166.80  Aligned_cols=265  Identities=17%  Similarity=0.226  Sum_probs=209.5

Q ss_pred             eeecceEEeeEecC-cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEE
Q 016224          107 VIKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA  185 (393)
Q Consensus       107 ~~~~~i~c~~~~~~-~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  185 (393)
                      ..+..|.|++|.++ ..++|..+|.|.||+..+. +..++...|.+.|.+++.-.+|.+| ||+.|..|..|| ..-+.+
T Consensus       244 ~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~-~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd-~~y~k~  320 (626)
T KOG2106|consen  244 REKKFVLCVTFLENGDVITGDSGGNILIWSKGTN-RISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWD-DNYRKL  320 (626)
T ss_pred             ccceEEEEEEEcCCCCEEeecCCceEEEEeCCCc-eEEeEeeecCCceEEEEEecCccEe-ecCccceEEecc-cccccc
Confidence            34468999999976 5778999999999999877 7777777999999999999998654 599999999999 555556


Q ss_pred             EEEecCC---ceEEEEeCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccC
Q 016224          186 GVINLGG---EVGCMISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT  259 (393)
Q Consensus       186 ~~~~~~~---~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~  259 (393)
                      +..+.++   .+..+.....-+.+| ..+.|..=.++.+-.+...+|......++.+|+  .|++++.|+.+++|+  ..
T Consensus       321 r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~  398 (626)
T KOG2106|consen  321 RETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH  398 (626)
T ss_pred             ccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CC
Confidence            6665553   455566533335555 677888888888888889999999999999887  999999999999998  22


Q ss_pred             CccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcE
Q 016224          260 TNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTI  335 (393)
Q Consensus       260 ~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i  335 (393)
                          ++.-.. .-..++.++.|+  + .++.|+..|...+.|.++...+..-.. .+++.++.++  |.+||.|+.|+.|
T Consensus       399 ----k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~i  471 (626)
T KOG2106|consen  399 ----KLEWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHI  471 (626)
T ss_pred             ----ceeEEE-EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeE
Confidence                222221 123344555554  5 899999999999999999666655555 8899999998  7899999999999


Q ss_pred             EEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          336 KVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       336 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                      +||-+...+........-....++.+.|++|++   +|.+-+-|-.|-.|.
T Consensus       472 yiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~---~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  472 YIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQ---FLVSNSGDYEILYWK  519 (626)
T ss_pred             EEEEECCCCcEEEEeeeecCceeEEeeecCCCc---eEEeccCceEEEEEc
Confidence            999998776655544433337899999998877   999999999999993

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.90  E-value=3.5e-22  Score=178.75  Aligned_cols=248  Identities=19%  Similarity=0.271  Sum_probs=183.0

Q ss_pred             EEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE----EEEEec-C-Cce--EEEEe-CCCEEEEEcCCeE
Q 016224          142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC----AGVINL-G-GEV--GCMIS-EGPWIFIGVTNFV  212 (393)
Q Consensus       142 ~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~----~~~~~~-~-~~~--~~~~~-~~~~l~~~~~~~i  212 (393)
                      ....+++|+..|+++++.|.|-+|+||+.|-+|++||+.....    .+.+.. . ..+  ..... .+.+|+++.....
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence            3457789999999999999999999999999999999875422    112211 1 112  22233 4455666777889


Q ss_pred             EEEECCCCcee-------------eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceee--cCcee
Q 016224          213 KAWNTQTNTDL-------------SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASL--KGHSL  274 (393)
Q Consensus       213 ~v~d~~~~~~~-------------~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~--~~~~~  274 (393)
                      +++|-...+..             ...+|...+++.+|+|.   .|++++.||++++||+.......+.+...  .+...
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence            99987765533             34679999999999997   89999999999999998765433322221  23445


Q ss_pred             eEEEEEEc--CCEEEEecCCCcEEEeeCCCcce---eeEeccCcc--ceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcc
Q 016224          275 AVVSLVVG--ANKLYSGSMDNSIRVWNLETLQC---IQTLTEHTS--VVMSLLCW--DQFLLSCSLDKTIKVWFATDSGN  345 (393)
Q Consensus       275 ~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~~--~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~  345 (393)
                      .+++.+|+  ++.||+|..||.|.+||......   ...-++|..  .|++|.|+  |++|++-+.|+++++||++..++
T Consensus       319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk  398 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK  398 (641)
T ss_pred             CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence            66777776  67899999999999999865332   233356777  89999998  89999999999999999997765


Q ss_pred             e-EEEEeecCCccEEEEEeeeCCCCCcEEEEEeC------CCeEEEEeCCceee
Q 016224          346 L-EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN------DNSVRFYDLPSVII  392 (393)
Q Consensus       346 ~-~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~------dg~I~iwd~~s~~l  392 (393)
                      . ...........-+.++|+|+..   +|++|..      .|.+.+||-.++.+
T Consensus       399 pL~~~tgL~t~~~~tdc~FSPd~k---li~TGtS~~~~~~~g~L~f~d~~t~d~  449 (641)
T KOG0772|consen  399 PLNVRTGLPTPFPGTDCCFSPDDK---LILTGTSAPNGMTAGTLFFFDRMTLDT  449 (641)
T ss_pred             chhhhcCCCccCCCCccccCCCce---EEEecccccCCCCCceEEEEeccceee
Confidence            3 3333444445567889998876   8888864      57899999877643

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=3.4e-21  Score=178.49  Aligned_cols=274  Identities=18%  Similarity=0.241  Sum_probs=207.7

Q ss_pred             ceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEec---------------CC-----c----CCEEEEEecCCCCEEE
Q 016224          111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLE---------------GH-----Q----KVVSGITLPSGSDKLY  166 (393)
Q Consensus       111 ~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~---------------~h-----~----~~I~~i~~s~~~~~l~  166 (393)
                      -..|+..+..-++.|+.+|.|++++..+- ..+.++.               .|     .    -.-.++.|++....|.
T Consensus       262 nAnCIcVs~r~I~cgCa~g~vrlFnp~tL-~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~kls  340 (1080)
T KOG1408|consen  262 NANCICVSSRLIACGCAKGMVRLFNPETL-DYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLS  340 (1080)
T ss_pred             ccceeeeecceEEEeeccceeeecCcchh-hhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEE
Confidence            34677778888899999999999987643 2222221               01     1    1234678899889999


Q ss_pred             EEeCCCcEEEEECCCCe----EEEEEec--------------CCceEEEEeCCCEEEEEcCCeEEEEECCCCc---e---
Q 016224          167 SGSKDETVRVWDCASGQ----CAGVINL--------------GGEVGCMISEGPWIFIGVTNFVKAWNTQTNT---D---  222 (393)
Q Consensus       167 s~s~dg~v~iwd~~~~~----~~~~~~~--------------~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~---~---  222 (393)
                      ..-.|..+.|||++.-.    +-..+.+              +.+.....+.+.++.++.|++|++|++....   .   
T Consensus       341 cVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrR  420 (1080)
T KOG1408|consen  341 CVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRR  420 (1080)
T ss_pred             EEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeec
Confidence            99999999999998643    2222222              1222334567788899999999999987632   0   


Q ss_pred             --------------------------------eeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCcee
Q 016224          223 --------------------------------LSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAAS  268 (393)
Q Consensus       223 --------------------------------~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~  268 (393)
                                                      .........+.+++++|+  .|++|..-|.++||++...    +....
T Consensus       421 Nils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l----~~~~~  496 (1080)
T KOG1408|consen  421 NILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL----EYTCF  496 (1080)
T ss_pred             ccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh----hhhhh
Confidence                                            011123346889999999  9999999999999999876    55677


Q ss_pred             ecCceeeEEEEEEc-----CCEEEEecCCCcEEEeeCC-CcceeeEeccCccceEEEEEc--C-----------------
Q 016224          269 LKGHSLAVVSLVVG-----ANKLYSGSMDNSIRVWNLE-TLQCIQTLTEHTSVVMSLLCW--D-----------------  323 (393)
Q Consensus       269 ~~~~~~~v~~l~~~-----~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~~--~-----------------  323 (393)
                      +..|...|.++.++     ..+|++++.|..|.|||+. +..+++++.+|...|+++.|.  +                 
T Consensus       497 ~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr  576 (1080)
T KOG1408|consen  497 MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFR  576 (1080)
T ss_pred             eecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhee
Confidence            88999999999987     2479999999999999985 466778888888888887764  1                 


Q ss_pred             --------------------------------CEEEEEeCCCcEEEEEcCCCcceEEEEeecC-CccEEEEEeeeCCCCC
Q 016224          324 --------------------------------QFLLSCSLDKTIKVWFATDSGNLEVTYTHNE-EHGVLALCGMPDSEGK  370 (393)
Q Consensus       324 --------------------------------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~  370 (393)
                                                      +++++++.|..|+|||+.++++...+.+... +.....+..-|.   +
T Consensus       577 ~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPS---g  653 (1080)
T KOG1408|consen  577 VNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPS---G  653 (1080)
T ss_pred             hhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCC---c
Confidence                                            4799999999999999999998888876443 355666665554   4


Q ss_pred             cEEEEEeCCCeEEEEeCCceee
Q 016224          371 PVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       371 ~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      .||++.+.|.++.++|..++++
T Consensus       654 iY~atScsdktl~~~Df~sgEc  675 (1080)
T KOG1408|consen  654 IYLATSCSDKTLCFVDFVSGEC  675 (1080)
T ss_pred             cEEEEeecCCceEEEEeccchh
Confidence            4999999999999999999875

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.89  E-value=5.1e-21  Score=168.02  Aligned_cols=233  Identities=19%  Similarity=0.292  Sum_probs=190.8

Q ss_pred             cccceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 016224          103 NNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA  180 (393)
Q Consensus       103 ~~~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~  180 (393)
                      .....|...|+.+.++++  ..++++.|-.|+||.+... ........|..+|+.+..+|.|+||++++.|++..+.|++
T Consensus       255 ~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~  333 (506)
T KOG0289|consen  255 ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS  333 (506)
T ss_pred             hhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-cCccccccccccceeeeeccCCcEEEEecCCceEEEEEcc
Confidence            334556778888899876  4567999999999999877 5666778899999999999999999999999999999999


Q ss_pred             CCeEEEEEecCCc-----eEEEEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcE
Q 016224          181 SGQCAGVINLGGE-----VGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAI  251 (393)
Q Consensus       181 ~~~~~~~~~~~~~-----~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I  251 (393)
                      ++.++........     ...+.+||.++.+| .|+.|++||+..+... .+.+|.++|..++|+.+  +|++++.|+.|
T Consensus       334 ~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V  413 (506)
T KOG0289|consen  334 SGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSV  413 (506)
T ss_pred             CCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeE
Confidence            9998887776422     23345788888877 7889999999998877 88899999999999998  99999999999


Q ss_pred             EEEEeccCCccccCceeec-CceeeEEEEEEc--CCEEEEecCCCcEEEeeCC--CcceeeEeccCccceEEEEEc--CC
Q 016224          252 LAWKFNVTTNCFEPAASLK-GHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLE--TLQCIQTLTEHTSVVMSLLCW--DQ  324 (393)
Q Consensus       252 ~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~l~~~--~~  324 (393)
                      ++||++....    ...+. .....+.++.++  |.+|+.++.|=.|++++-.  +.+++..+..|.+..+.+.|.  .+
T Consensus       414 ~lwDLRKl~n----~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq  489 (506)
T KOG0289|consen  414 KLWDLRKLKN----FKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQ  489 (506)
T ss_pred             EEEEehhhcc----cceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccce
Confidence            9999998642    22222 122357777775  7899999888777777743  567788888899899999997  57


Q ss_pred             EEEEEeCCCcEEEEEc
Q 016224          325 FLLSCSLDKTIKVWFA  340 (393)
Q Consensus       325 ~l~s~s~dg~i~iwd~  340 (393)
                      ++++++.|..++++.+
T Consensus       490 ~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  490 YLASTSMDAILRLYAL  505 (506)
T ss_pred             EEeeccchhheEEeec
Confidence            9999999999888754

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=6e-22  Score=181.79  Aligned_cols=230  Identities=21%  Similarity=0.349  Sum_probs=186.2

Q ss_pred             cEEEecCCCeEEEEECCCCc-EEEEEecCCcCCEEEEEe-cCCCCEEEEEeCCCcEEEEECCCCeE--EEEEecCCceEE
Q 016224          121 NCMYGEKCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQC--AGVINLGGEVGC  196 (393)
Q Consensus       121 ~~~~g~~dg~i~vwd~~~~~-~~~~~l~~h~~~I~~i~~-s~~~~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~~~  196 (393)
                      .+++++.|-+|++|+...+. -+..++..|++.|.|++. -++..++|||+.|+.|.|||++++..  +..+..      
T Consensus        87 tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~------  160 (735)
T KOG0308|consen   87 TLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN------  160 (735)
T ss_pred             ceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc------
Confidence            68899999999999987652 467788999999999999 78889999999999999999998843  222210      


Q ss_pred             EEeCCCEEEEEcCCeEEEEECCCCceeee-cCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCce
Q 016224          197 MISEGPWIFIGVTNFVKAWNTQTNTDLSL-SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHS  273 (393)
Q Consensus       197 ~~~~~~~l~~~~~~~i~v~d~~~~~~~~~-~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~  273 (393)
                                             -....+ .++...|++++.++.  .+++|+..+.|++||.++.    +.+..+.+|+
T Consensus       161 -----------------------~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~----~kimkLrGHT  213 (735)
T KOG0308|consen  161 -----------------------VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC----KKIMKLRGHT  213 (735)
T ss_pred             -----------------------cccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc----cceeeeeccc
Confidence                                   000112 278899999999998  8999999999999999998    5567778999


Q ss_pred             eeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCC--EEEEEeCCCcEEEEEcCCCcceEEE
Q 016224          274 LAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ--FLLSCSLDKTIKVWFATDSGNLEVT  349 (393)
Q Consensus       274 ~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~dg~i~iwd~~~~~~~~~~  349 (393)
                      ..|..+-.+  |+.+++++.||+|++||+...+++.++..|...|.++..++.  .+++|+.||.|..=|+++......+
T Consensus       214 dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli  293 (735)
T KOG0308|consen  214 DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI  293 (735)
T ss_pred             cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEe
Confidence            999998875  779999999999999999999999999999999999999864  7999999999999999886555555


Q ss_pred             EeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          350 YTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       350 ~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      ....+  ++..+.......   -+-+++.|+.|+-|.++
T Consensus       294 ck~da--Pv~~l~~~~~~~---~~WvtTtds~I~rW~~~  327 (735)
T KOG0308|consen  294 CKEDA--PVLKLHLHEHDN---SVWVTTTDSSIKRWKLE  327 (735)
T ss_pred             ecCCC--chhhhhhccccC---CceeeeccccceecCCc
Confidence            44433  355554443222   34777889999999765

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=5.7e-21  Score=161.49  Aligned_cols=204  Identities=17%  Similarity=0.246  Sum_probs=174.2

Q ss_pred             CCCCCCcccccceeecceEEeeEecC----cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC
Q 016224           95 GNSKNSNINNRAVIKTDILCRNWVQG----NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK  170 (393)
Q Consensus        95 ~~~~~~~~~~~~~~~~~i~c~~~~~~----~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~  170 (393)
                      .......+.....|.+.|+|+.|.+.    .+++|+.||.|.+|++..- +++..+++|.+.|+.|+.+|.+++-++.+.
T Consensus        69 Dm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~KLALsVg~  147 (362)
T KOG0294|consen   69 DMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGKLALSVGG  147 (362)
T ss_pred             eccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCceEEEEcC
Confidence            34444455667788999999999754    5789999999999999886 999999999999999999999999999999


Q ss_pred             CCcEEEEECCCCeEEEEEecCC--ceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC-EEEEEeC
Q 016224          171 DETVRVWDCASGQCAGVINLGG--EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQ  247 (393)
Q Consensus       171 dg~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~~  247 (393)
                      |+.+++||+-+|+.-.......  ....+.+.|..++++..+.|-+|.+.+...+........+.++.|... .|++|..
T Consensus       148 D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d  227 (362)
T KOG0294|consen  148 DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGD  227 (362)
T ss_pred             CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecC
Confidence            9999999999998777666553  445566899999999999999999999887755555577888888655 9999999


Q ss_pred             CCcEEEEEeccCCccccCceeecCceeeEEEEEEc----CCEEEEecCCCcEEEeeCCCc
Q 016224          248 DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG----ANKLYSGSMDNSIRVWNLETL  303 (393)
Q Consensus       248 dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~iwd~~~~  303 (393)
                      |+.|.+||....    .+...+.+|...|..+.+-    +.+|++++.||.|+|||++..
T Consensus       228 ~~~i~~~D~ds~----~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  228 NEWISLKDTDSD----TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             CceEEEeccCCC----ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            999999998875    7788899999999999853    358999999999999999865

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.89  E-value=1.8e-20  Score=155.17  Aligned_cols=227  Identities=20%  Similarity=0.259  Sum_probs=182.0

Q ss_pred             EecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce-EEEE--eCCCEEEEE-cCCeEEEEECCCC
Q 016224          145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV-GCMI--SEGPWIFIG-VTNFVKAWNTQTN  220 (393)
Q Consensus       145 ~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~--~~~~~l~~~-~~~~i~v~d~~~~  220 (393)
                      .+++|+.+|+.|.++.+|.+|+|++.|.+..||-..+|+.+.++..+... -++.  .+.+.+++| .|.++++||++++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            47899999999999999999999999999999999999999999877544 3333  356667765 8899999999999


Q ss_pred             ceeeecCCCCcEEEEEEeCC--EEEEEeC-----CCcEEEEEeccCCc---cccCceeecCceeeEEEEEEc--CCEEEE
Q 016224          221 TDLSLSGPVGQVYAMAVGND--LLFAGTQ-----DGAILAWKFNVTTN---CFEPAASLKGHSLAVVSLVVG--ANKLYS  288 (393)
Q Consensus       221 ~~~~~~~~~~~v~~l~~~~~--~l~~~~~-----dg~I~vwd~~~~~~---~~~~~~~~~~~~~~v~~l~~~--~~~l~s  288 (393)
                      +.+.......+|..+.|+.+  +++..+.     .+.|.++|++....   ..++...+..+...++..-|+  ++.|++
T Consensus        85 k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~  164 (327)
T KOG0643|consen   85 KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA  164 (327)
T ss_pred             cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE
Confidence            99988888899999999887  4444332     35699999985431   125566677777888888886  679999


Q ss_pred             ecCCCcEEEeeCCCc-ceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeee
Q 016224          289 GSMDNSIRVWNLETL-QCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMP  365 (393)
Q Consensus       289 g~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~  365 (393)
                      |..||.|.+||++++ +.+..-+.|...|+.+.++  ..++++++.|.+-++||..+...+..+.   .+.++.+.+++|
T Consensus       165 Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~---te~PvN~aaisP  241 (327)
T KOG0643|consen  165 GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT---TERPVNTAAISP  241 (327)
T ss_pred             ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee---ecccccceeccc
Confidence            999999999999997 5567778899999999998  5699999999999999998765544433   345688888888


Q ss_pred             CCCCCcEEEEEe
Q 016224          366 DSEGKPVLLCSC  377 (393)
Q Consensus       366 ~~~~~~~l~s~s  377 (393)
                      ..+   .++.|+
T Consensus       242 ~~d---~VilgG  250 (327)
T KOG0643|consen  242 LLD---HVILGG  250 (327)
T ss_pred             ccc---eEEecC
Confidence            655   455443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.2e-21  Score=173.43  Aligned_cols=234  Identities=18%  Similarity=0.245  Sum_probs=183.2

Q ss_pred             ceeecceEEeeEecCc-EEEec-CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC--
Q 016224          106 AVIKTDILCRNWVQGN-CMYGE-KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS--  181 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~~-~~~g~-~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~--  181 (393)
                      ....+++.|++-++.+ .++++ ..|.|++|.+.+| .++..+.+|=..|+++.|+-|+.+|+|||.||.|.+|.+..  
T Consensus        78 ~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG-~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv  156 (476)
T KOG0646|consen   78 IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSG-ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV  156 (476)
T ss_pred             cccccceeeeecCCCceEEEeecccCcEEEEEeccc-cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec
Confidence            3345679999988775 44555 9999999999999 89999999999999999999999999999999999998632  


Q ss_pred             -------CeEEEEEecCC-ceEEEE-----eCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEe
Q 016224          182 -------GQCAGVINLGG-EVGCMI-----SEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT  246 (393)
Q Consensus       182 -------~~~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~  246 (393)
                             -+....+..+. ++..+.     .+.+++.++.|.++++||+..+..+........+.+++.+|-  .+++|+
T Consensus       157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt  236 (476)
T KOG0646|consen  157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT  236 (476)
T ss_pred             ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC
Confidence                   23344444332 233332     245566678999999999999999877778889999999987  999999


Q ss_pred             CCCcEEEEEeccCCc------------cccCceeecCcee--eEEEEEE--cCCEEEEecCCCcEEEeeCCCcceeeEec
Q 016224          247 QDGAILAWKFNVTTN------------CFEPAASLKGHSL--AVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLT  310 (393)
Q Consensus       247 ~dg~I~vwd~~~~~~------------~~~~~~~~~~~~~--~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  310 (393)
                      .+|.|.+.++.....            .......+.+|..  .|+|++.  ++..|++|+.||.|.|||+.+.++++++.
T Consensus       237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence            999999988765431            1123455678877  8888876  58899999999999999999999999998


Q ss_pred             cCccceEEEEEc---CCEEEEEeCCCcEEEEEc
Q 016224          311 EHTSVVMSLLCW---DQFLLSCSLDKTIKVWFA  340 (393)
Q Consensus       311 ~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~  340 (393)
                      ...++|+.+.+.   ...++.-.....+-.|++
T Consensus       317 ~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l  349 (476)
T KOG0646|consen  317 TSKGPVTNLQINPLERGIILFEHKQPSLPNPHL  349 (476)
T ss_pred             hhccccceeEeeccccceecccccCccCCchHh
Confidence            888899988884   344443444445555554

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=2.9e-21  Score=177.87  Aligned_cols=227  Identities=23%  Similarity=0.330  Sum_probs=188.5

Q ss_pred             ecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecC-CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEE
Q 016224          109 KTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEG-HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA  185 (393)
Q Consensus       109 ~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~-h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  185 (393)
                      ...|+++.|+++  .+.+|..+|.|.|||..+. +.+..+.+ |...|-+++|.  +..+.+|+.|+.|..+|++..+..
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~-k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~  293 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ-KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV  293 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhc-cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence            679999999966  4567999999999999987 77888888 99999999998  668999999999999999987655


Q ss_pred             EE-EecCCceEE---EEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC---EEEEE--eCCCcEEEE
Q 016224          186 GV-INLGGEVGC---MISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAG--TQDGAILAW  254 (393)
Q Consensus       186 ~~-~~~~~~~~~---~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~~--~~dg~I~vw  254 (393)
                      .. +..+..-.|   +..++.++++| .|+.+.|||....... .+..|...|.+++|+|-   +||+|  +.|+.|++|
T Consensus       294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw  373 (484)
T KOG0305|consen  294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW  373 (484)
T ss_pred             hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence            54 554444333   34688899986 8999999999665544 89999999999999986   88886  479999999


Q ss_pred             EeccCCccccCceeecCceeeEEEEEEcCCE--EEE--ecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEE
Q 016224          255 KFNVTTNCFEPAASLKGHSLAVVSLVVGANK--LYS--GSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLS  328 (393)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~s--g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s  328 (393)
                      |..++    ..+.... ....|+.|.|+..+  |++  |..++.|.||+..+.+.+..+.+|...|..++++  +..+++
T Consensus       374 n~~~g----~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t  448 (484)
T KOG0305|consen  374 NTNTG----ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVT  448 (484)
T ss_pred             EcCCC----cEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEE
Confidence            99987    3333333 46789999998543  444  4567899999999999999999999999999998  679999


Q ss_pred             EeCCCcEEEEEcCCC
Q 016224          329 CSLDKTIKVWFATDS  343 (393)
Q Consensus       329 ~s~dg~i~iwd~~~~  343 (393)
                      |+.|.++++|++-..
T Consensus       449 ~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  449 GAADETLRFWNLFDE  463 (484)
T ss_pred             ecccCcEEeccccCC
Confidence            999999999998654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=9e-21  Score=160.30  Aligned_cols=268  Identities=13%  Similarity=0.169  Sum_probs=191.5

Q ss_pred             eEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 016224          112 ILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN  189 (393)
Q Consensus       112 i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  189 (393)
                      ..|++|+.-  .+.+|..+|.|.|||+.+- ..-+.+.+|..+|++++||++|+.|+|+|.|..|++||+..|.+++.+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF-RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEcccc-chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence            689999965  4557999999999999986 7888999999999999999999999999999999999999999999999


Q ss_pred             cCCceEEEE--e--CCCEEEEEcCCeEEEEECCCCceeee--cCCC--C-cEEEEEEeC--CEEEEEeCCCcEEEEEecc
Q 016224          190 LGGEVGCMI--S--EGPWIFIGVTNFVKAWNTQTNTDLSL--SGPV--G-QVYAMAVGN--DLLFAGTQDGAILAWKFNV  258 (393)
Q Consensus       190 ~~~~~~~~~--~--~~~~l~~~~~~~i~v~d~~~~~~~~~--~~~~--~-~v~~l~~~~--~~l~~~~~dg~I~vwd~~~  258 (393)
                      ...++-...  +  .+..+++-.+..-.+.++...+...+  ....  . .-.+..|++  +++++|+..|.+.++|..+
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t  184 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET  184 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence            888764432  2  34445554554444444443322211  1111  1 111223443  4999999999999999887


Q ss_pred             CCccccCceeecCce-eeEEEEEE--cCCEEEEecCCCcEEEeeCCCc-------c--eeeEecc--CccceEEEEEc--
Q 016224          259 TTNCFEPAASLKGHS-LAVVSLVV--GANKLYSGSMDNSIRVWNLETL-------Q--CIQTLTE--HTSVVMSLLCW--  322 (393)
Q Consensus       259 ~~~~~~~~~~~~~~~-~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~-------~--~~~~~~~--~~~~v~~l~~~--  322 (393)
                      .    +.+..++-.. ..|..+.+  .+..|+..+.|..||.|+++.-       +  +.+.++.  ....-.+++|+  
T Consensus       185 ~----e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d  260 (405)
T KOG1273|consen  185 L----ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD  260 (405)
T ss_pred             h----eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence            6    5555554433 55655555  5889999999999999998631       1  1122221  12233566676  


Q ss_pred             CCEEEEEeC-CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          323 DQFLLSCSL-DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       323 ~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      |.|++.++. ...++||....+..+..+.+...+ ....+.|.|..+   .|++- ..|.|++|....
T Consensus       261 geYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~DV~whp~rp---~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  261 GEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLDVNWHPVRP---IIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             ccEEEeccccceeEEEEecCCcceeeeecCCchh-heeeccccccee---eeeec-cCCceEEEEeec
Confidence            667776664 456999999888877777765533 477899999877   66666 789999998643

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=2.8e-20  Score=156.86  Aligned_cols=252  Identities=13%  Similarity=0.173  Sum_probs=183.1

Q ss_pred             ccceeecceEEeeEe--cCcEEEecCCCeEEEEECCCC---cEEEEEecCCcCCEEEEEe-cC-CCCEEEEEeCCCcEEE
Q 016224          104 NRAVIKTDILCRNWV--QGNCMYGEKCKFLHSWTVGDG---FKLLTQLEGHQKVVSGITL-PS-GSDKLYSGSKDETVRV  176 (393)
Q Consensus       104 ~~~~~~~~i~c~~~~--~~~~~~g~~dg~i~vwd~~~~---~~~~~~l~~h~~~I~~i~~-s~-~~~~l~s~s~dg~v~i  176 (393)
                      +.+.|+.-|.|+.|.  ....++++.|.+|+|||..+.   +.+....+.|.+.|..|.| +| -|+.+|+++.|+++.|
T Consensus         8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence            345677788898875  456778999999999996532   6778888999999999999 34 5899999999999999


Q ss_pred             EECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC----EEEEEeCCCcEE
Q 016224          177 WDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAIL  252 (393)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~----~l~~~~~dg~I~  252 (393)
                      |.-...+    +..++                    +-|.    +...+......|+++.|.|.    .|++++.||.|+
T Consensus        88 WEE~~~~----~~~~~--------------------~~Wv----~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lR  139 (361)
T KOG2445|consen   88 WEEQEKS----EEAHG--------------------RRWV----RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILR  139 (361)
T ss_pred             eeecccc----ccccc--------------------ceeE----EEEEeecCCcceeEEEecchhcceEEEEeccCcEEE
Confidence            9854211    11000                    0010    11255677889999999997    899999999999


Q ss_pred             EEEeccCCcc--ccCceeec-------CceeeEEEEEEcC-----CEEEEecCC-----CcEEEeeCCC----cceeeEe
Q 016224          253 AWKFNVTTNC--FEPAASLK-------GHSLAVVSLVVGA-----NKLYSGSMD-----NSIRVWNLET----LQCIQTL  309 (393)
Q Consensus       253 vwd~~~~~~~--~~~~~~~~-------~~~~~v~~l~~~~-----~~l~sg~~d-----g~i~iwd~~~----~~~~~~~  309 (393)
                      ||+.-.....  +.+..++.       .+..+..|++|++     .+|+.|+.+     +.++||....    ...+.++
T Consensus       140 IYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L  219 (361)
T KOG2445|consen  140 IYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL  219 (361)
T ss_pred             EEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc
Confidence            9987543221  22233332       4666778898874     357777765     4788887643    3456778


Q ss_pred             ccCccceEEEEEcC------CEEEEEeCCCcEEEEEcCCCc-----------------ceEEEEe-ecCCccEEEEEeee
Q 016224          310 TEHTSVVMSLLCWD------QFLLSCSLDKTIKVWFATDSG-----------------NLEVTYT-HNEEHGVLALCGMP  365 (393)
Q Consensus       310 ~~~~~~v~~l~~~~------~~l~s~s~dg~i~iwd~~~~~-----------------~~~~~~~-~~~~~~v~~~~~~~  365 (393)
                      .+|..+|++|+|.+      .+|++++.|| |+||.++...                 .++.+.. ..+...|..+.|.-
T Consensus       220 ~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm  298 (361)
T KOG2445|consen  220 PDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM  298 (361)
T ss_pred             CCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee
Confidence            89999999999984      3799999999 9999987311                 1222221 22334699999987


Q ss_pred             CCCCCcEEEEEeCCCeEEEEeC
Q 016224          366 DSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       366 ~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      .+.   +|++.+.||.||+|..
T Consensus       299 tGt---iLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  299 TGT---ILSSTGDDGCVRLWKA  317 (361)
T ss_pred             eee---EEeecCCCceeeehhh
Confidence            766   9999999999999975

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=3.3e-22  Score=186.75  Aligned_cols=227  Identities=18%  Similarity=0.261  Sum_probs=177.2

Q ss_pred             cCcEEEecCCCeEEEEECCC--CcEEEEEecCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceE
Q 016224          119 QGNCMYGEKCKFLHSWTVGD--GFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG  195 (393)
Q Consensus       119 ~~~~~~g~~dg~i~vwd~~~--~~~~~~~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~  195 (393)
                      .+.+++++..|.|.+||+..  ..+++..|..|+..|+++.|++ ...+|+|||.||+|++||++..+...++       
T Consensus       100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~-------  172 (839)
T KOG0269|consen  100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF-------  172 (839)
T ss_pred             hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc-------
Confidence            44567899999999999986  2377788999999999999987 5578999999999999999887765444       


Q ss_pred             EEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCc
Q 016224          196 CMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGH  272 (393)
Q Consensus       196 ~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~  272 (393)
                                                    .+....|..+.|+|.   .|+++.+.|.+++||++...   .....+..|
T Consensus       173 ------------------------------~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~---r~~~k~~AH  219 (839)
T KOG0269|consen  173 ------------------------------RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD---RCEKKLTAH  219 (839)
T ss_pred             ------------------------------cccchhhhceeeccCCCceEEEecCCceEEEeeccCch---hHHHHhhcc
Confidence                                          345667889999875   99999999999999999875   566778899


Q ss_pred             eeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcceeeEecc-CccceEEEEEcC---CEEEEEeC--CCcEEEEEcCCCc
Q 016224          273 SLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCWD---QFLLSCSL--DKTIKVWFATDSG  344 (393)
Q Consensus       273 ~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~---~~l~s~s~--dg~i~iwd~~~~~  344 (393)
                      .++|.++.|+++  +||||+.|+.|+|||..+.+.-..... ...++..+.|-+   ..|++++.  |-.|+|||++..-
T Consensus       220 ~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY  299 (839)
T KOG0269|consen  220 NGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY  299 (839)
T ss_pred             cCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc
Confidence            999999999865  799999999999999987554333332 345789999984   46888775  7789999998665


Q ss_pred             ceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          345 NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       345 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      ....... .+...+..++|-..  +...|.+++.||+|..-.++
T Consensus       300 IP~~t~~-eH~~~vt~i~W~~~--d~~~l~s~sKD~tv~qh~~k  340 (839)
T KOG0269|consen  300 IPYATFL-EHTDSVTGIAWDSG--DRINLWSCSKDGTVLQHLFK  340 (839)
T ss_pred             ccceeee-ccCccccceeccCC--CceeeEeecCccHHHHhhhh
Confidence            4433332 22234677777542  33479999999988654443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.88  E-value=1.5e-21  Score=172.41  Aligned_cols=211  Identities=21%  Similarity=0.315  Sum_probs=169.4

Q ss_pred             CCcCCEEEEEecCCC-CEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeec
Q 016224          148 GHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS  226 (393)
Q Consensus       148 ~h~~~I~~i~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~  226 (393)
                      .|.+.|..+...|.. .++|+.+..+.|.|||+.+.........                           .-...+.+.
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~---------------------------~~~Pdl~L~  174 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG---------------------------ECRPDLRLK  174 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc---------------------------cCCCceEEE
Confidence            499999999998854 6677788899999999876433221100                           011123567


Q ss_pred             CCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCcc---ccCceeecCceeeEEEEEEc---CCEEEEecCCCcEEE
Q 016224          227 GPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC---FEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRV  297 (393)
Q Consensus       227 ~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~---~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~i  297 (393)
                      +|...-++++|++.   .|++++.|++|.+||+......   ..+...+.+|...|..++|.   .+.|++.+.|+.+.|
T Consensus       175 gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~i  254 (422)
T KOG0264|consen  175 GHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMI  254 (422)
T ss_pred             eecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEE
Confidence            78777888999886   9999999999999999876542   45667788999999999986   458999999999999


Q ss_pred             eeCC--CcceeeEeccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcc-eEEEEeecCCccEEEEEeeeCCCCCc
Q 016224          298 WNLE--TLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKP  371 (393)
Q Consensus       298 wd~~--~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~  371 (393)
                      ||+|  +.++.....+|...|.+++|.   +..||+||.|++|.+||+++... +..+..|...  |..+.|+|...  .
T Consensus       255 wD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de--v~~V~WSPh~e--t  330 (422)
T KOG0264|consen  255 WDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDE--VFQVEWSPHNE--T  330 (422)
T ss_pred             EEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcc--eEEEEeCCCCC--c
Confidence            9999  567778888999999999998   56899999999999999998765 4445555554  99999999854  4


Q ss_pred             EEEEEeCCCeEEEEeCCc
Q 016224          372 VLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       372 ~l~s~s~dg~I~iwd~~s  389 (393)
                      +|++++.|+.+.+||+..
T Consensus       331 vLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  331 VLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             eeEecccCCcEEEEeccc
Confidence            999999999999999864

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=6.9e-21  Score=168.44  Aligned_cols=273  Identities=13%  Similarity=0.159  Sum_probs=211.8

Q ss_pred             ecceEEeeEecCc--EEEecCCCeEEEEECCCC-cEEEEEecCCcCCEEEEEecCCCC-EEEEEeCCCcEEEEECCCCeE
Q 016224          109 KTDILCRNWVQGN--CMYGEKCKFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQC  184 (393)
Q Consensus       109 ~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~-~~~~~~l~~h~~~I~~i~~s~~~~-~l~s~s~dg~v~iwd~~~~~~  184 (393)
                      ...|+|+.|.+..  +++++.|+.++||.++.. ...++.+.--..+|.+..|.|+|. .+++++....+..||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            4599999999884  557999999999998732 256677777789999999999998 999999999999999998876


Q ss_pred             EEEEecCCc----e--EEEEeCCCEEEE-EcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEE
Q 016224          185 AGVINLGGE----V--GCMISEGPWIFI-GVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK  255 (393)
Q Consensus       185 ~~~~~~~~~----~--~~~~~~~~~l~~-~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd  255 (393)
                      ...-...+.    +  -.+.+++.+|+. |..|.|.+....+++.+......+.|..++|+.+  .|++.+.+|.|.+||
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~n  372 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWN  372 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEe
Confidence            554332211    1  223467777765 6889999999999999877777889999999887  888888999999999


Q ss_pred             eccCCccccCceeecCc---eeeEEEEEEcCCEEEEecCCCcEEEeeCCC------cceeeEeccCccceEEEEEc--CC
Q 016224          256 FNVTTNCFEPAASLKGH---SLAVVSLVVGANKLYSGSMDNSIRVWNLET------LQCIQTLTEHTSVVMSLLCW--DQ  324 (393)
Q Consensus       256 ~~~~~~~~~~~~~~~~~---~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~l~~~--~~  324 (393)
                      ++..    ..+..+...   .+.-.|++.++.+||+|+..|.|.|||..+      .+++.++..-...|+++.|+  .+
T Consensus       373 l~~~----~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q  448 (514)
T KOG2055|consen  373 LRQN----SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ  448 (514)
T ss_pred             cCCc----ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence            9987    444444321   122345557788999999999999999753      56788888888899999998  45


Q ss_pred             EEEEEeC--CCcEEEEEcCCCcceEEEEeec-CCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          325 FLLSCSL--DKTIKVWFATDSGNLEVTYTHN-EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       325 ~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      .|+.+|.  +..+++-.+.+......+.... .-..+++++|+|.+.   +|+.|..+|.|.+|.+.
T Consensus       449 iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG---~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  449 ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSG---YLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCc---eEEeecCCCceeeEeec
Confidence            6666654  6789998886544333333222 224589999999876   99999999999999875

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1e-19  Score=147.27  Aligned_cols=240  Identities=20%  Similarity=0.299  Sum_probs=186.3

Q ss_pred             cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe----------------EEEEEecCCce--EEEEeCC
Q 016224          140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ----------------CAGVINLGGEV--GCMISEG  201 (393)
Q Consensus       140 ~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~----------------~~~~~~~~~~~--~~~~~~~  201 (393)
                      ++.+..+. .+..|.+++|+|.|.+.+.|+...+++|-.+..-.                +.+.-.+.+.+  .++.+.+
T Consensus        23 f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g  101 (350)
T KOG0641|consen   23 FEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG  101 (350)
T ss_pred             eEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc
Confidence            34455554 66789999999999999999999999987543210                11111223333  3455799


Q ss_pred             CEEEEE-cCCeEEEEECCC------CceeeecCCCCcEEEEEEeCC------EEEEEe-CCCcEEEEEeccCCccccCce
Q 016224          202 PWIFIG-VTNFVKAWNTQT------NTDLSLSGPVGQVYAMAVGND------LLFAGT-QDGAILAWKFNVTTNCFEPAA  267 (393)
Q Consensus       202 ~~l~~~-~~~~i~v~d~~~------~~~~~~~~~~~~v~~l~~~~~------~l~~~~-~dg~I~vwd~~~~~~~~~~~~  267 (393)
                      +++++| .|.+|++.....      +..+.+.-|.+.|..++|-.+      +|++++ .|..|++-|...+    ...+
T Consensus       102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g----~~~~  177 (350)
T KOG0641|consen  102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG----QGFH  177 (350)
T ss_pred             CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC----Ccce
Confidence            999998 677888866543      334578889999999999544      555543 5667777777766    6678


Q ss_pred             eecCceeeEEEE-EEcCCEEEEecCCCcEEEeeCCCcceeeEecc--C-----ccceEEEEEc--CCEEEEEeCCCcEEE
Q 016224          268 SLKGHSLAVVSL-VVGANKLYSGSMDNSIRVWNLETLQCIQTLTE--H-----TSVVMSLLCW--DQFLLSCSLDKTIKV  337 (393)
Q Consensus       268 ~~~~~~~~v~~l-~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~-----~~~v~~l~~~--~~~l~s~s~dg~i~i  337 (393)
                      .+.+|.+.|.++ +|++-++++|+.|.+|++||++-..++.++..  |     ...|.+++.+  |++|++|-.|..-.+
T Consensus       178 a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~l  257 (350)
T KOG0641|consen  178 ALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML  257 (350)
T ss_pred             eecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEE
Confidence            889999999887 58899999999999999999999888888752  2     3467777776  789999999999999


Q ss_pred             EEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          338 WFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       338 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      ||++.+..++.+..|..+  +.++.|+|...   |+++++.|..|++=|+..
T Consensus       258 ydirg~r~iq~f~phsad--ir~vrfsp~a~---yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  258 YDIRGGRMIQRFHPHSAD--IRCVRFSPGAH---YLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             EEeeCCceeeeeCCCccc--eeEEEeCCCce---EEEEecccceEEEeeccc
Confidence            999988888888777766  88899988665   999999999999999863

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.88  E-value=2.7e-19  Score=168.77  Aligned_cols=270  Identities=18%  Similarity=0.285  Sum_probs=195.8

Q ss_pred             eeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCC-EEEEEeCCCcEEEEECCCCe
Q 016224          107 VIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQ  183 (393)
Q Consensus       107 ~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~-~l~s~s~dg~v~iwd~~~~~  183 (393)
                      .+...|+++.-+|-  -++.|..+|+|.++++..+ +.+.+++...+.|++++|.-||+ .|++|+..|.+.+||++..+
T Consensus       200 ~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d-kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kk  278 (910)
T KOG1539|consen  200 EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD-KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKK  278 (910)
T ss_pred             ccccceeEeccCCcceEEEEeccCceEEEEEcccC-cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCe
Confidence            34468899988875  4557999999999999998 89999995569999999998886 55667777999999999877


Q ss_pred             EEEEEec-C-Cce--EEEEeCCCEEEE-EcCCeEEEE-------------------------------------------
Q 016224          184 CAGVINL-G-GEV--GCMISEGPWIFI-GVTNFVKAW-------------------------------------------  215 (393)
Q Consensus       184 ~~~~~~~-~-~~~--~~~~~~~~~l~~-~~~~~i~v~-------------------------------------------  215 (393)
                      .+..+.. + +.+  ..+.+...++++ +.|+.+++|                                           
T Consensus       279 l~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt  358 (910)
T KOG1539|consen  279 LINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRT  358 (910)
T ss_pred             eeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcc
Confidence            6655541 1 111  111222222222 234433333                                           


Q ss_pred             ---------------------------------------------------------------------ECCCCce--e-
Q 016224          216 ---------------------------------------------------------------------NTQTNTD--L-  223 (393)
Q Consensus       216 ---------------------------------------------------------------------d~~~~~~--~-  223 (393)
                                                                                           +.+....  . 
T Consensus       359 ~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~  438 (910)
T KOG1539|consen  359 LRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHV  438 (910)
T ss_pred             hhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEE
Confidence                                                                                 2222111  0 


Q ss_pred             ----eecCCCCcEEEEEEe--CCEEEEEeCCCcEEEEEeccCCccccCceee---cCceeeEEEEEEcC--CEEEEecCC
Q 016224          224 ----SLSGPVGQVYAMAVG--NDLLFAGTQDGAILAWKFNVTTNCFEPAASL---KGHSLAVVSLVVGA--NKLYSGSMD  292 (393)
Q Consensus       224 ----~~~~~~~~v~~l~~~--~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~---~~~~~~v~~l~~~~--~~l~sg~~d  292 (393)
                          .+......+++++.+  .++.+.|...|.|-+|+++++-    ....+   ..|..+|+.++.++  ..+++++.+
T Consensus       439 L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi----~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~  514 (910)
T KOG1539|consen  439 LDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI----HRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGAD  514 (910)
T ss_pred             ecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCe----eecccccCccccCceeEEEecCCCceEEEccCc
Confidence                111122445555554  4588889999999999998873    23334   57999999999985  469999999


Q ss_pred             CcEEEeeCCCcce-----------------------------------------eeEeccCccceEEEEEc--CCEEEEE
Q 016224          293 NSIRVWNLETLQC-----------------------------------------IQTLTEHTSVVMSLLCW--DQFLLSC  329 (393)
Q Consensus       293 g~i~iwd~~~~~~-----------------------------------------~~~~~~~~~~v~~l~~~--~~~l~s~  329 (393)
                      |.+++||.....+                                         ++.|.+|...|++++|+  |++|+++
T Consensus       515 Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisa  594 (910)
T KOG1539|consen  515 GILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISA  594 (910)
T ss_pred             ceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEe
Confidence            9999999875432                                         23356899999999999  7899999


Q ss_pred             eCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC-CeEEEEeC
Q 016224          330 SLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND-NSVRFYDL  387 (393)
Q Consensus       330 s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d-g~I~iwd~  387 (393)
                      +.|++|++||+.++..+..+..   +..++.+.|+|.++   +|+|...| .-|++|-=
T Consensus       595 smD~tIr~wDlpt~~lID~~~v---d~~~~sls~SPngD---~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  595 SMDSTIRTWDLPTGTLIDGLLV---DSPCTSLSFSPNGD---FLATVHVDQNGIYLWSN  647 (910)
T ss_pred             ecCCcEEEEeccCcceeeeEec---CCcceeeEECCCCC---EEEEEEecCceEEEEEc
Confidence            9999999999999877666554   34588999999887   99999998 66999963

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=4.7e-20  Score=175.62  Aligned_cols=236  Identities=18%  Similarity=0.209  Sum_probs=193.9

Q ss_pred             cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEEEEEe-cCCceEEEEeCCCE-EEEEcCCeEEEEECCCCcee
Q 016224          147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG-QCAGVIN-LGGEVGCMISEGPW-IFIGVTNFVKAWNTQTNTDL  223 (393)
Q Consensus       147 ~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~-~~~~~~~~~~~~~~-l~~~~~~~i~v~d~~~~~~~  223 (393)
                      ..|+..-+.|+|.++|++|++++.||.|++|+.... +.-..+. ....+.++...... ++++.+++|.+|.+..++..
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~   89 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED   89 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence            468999999999999999999999999999998765 4444444 45555666554444 44558889999999998876


Q ss_pred             -eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEe
Q 016224          224 -SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVW  298 (393)
Q Consensus       224 -~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iw  298 (393)
                       .+....-++.+++|+.+  +++.|+.|-.|++.++...    .....+.+|..+|.++.++  +++||+.+.||.|++|
T Consensus        90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~----s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw  165 (933)
T KOG1274|consen   90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS----SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW  165 (933)
T ss_pred             ceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc----chheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence             55666778899999887  9999999999999999887    4567889999999999998  4589999999999999


Q ss_pred             eCCCcceeeEeccC--------ccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCC
Q 016224          299 NLETLQCIQTLTEH--------TSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE  368 (393)
Q Consensus       299 d~~~~~~~~~~~~~--------~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  368 (393)
                      |+.++.+..++.+-        ...+..++|+  +..++....|+.|++|+....+....+........+..+.|+|.+.
T Consensus       166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~  245 (933)
T KOG1274|consen  166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK  245 (933)
T ss_pred             EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCc
Confidence            99999888777531        3455778888  4578888899999999998887777776655555588889988765


Q ss_pred             CCcEEEEEeCCCeEEEEeCCc
Q 016224          369 GKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       369 ~~~~l~s~s~dg~I~iwd~~s  389 (393)
                         |||+++.||.|.|||+++
T Consensus       246 ---YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  246 ---YIAASTLDGQILVWNVDT  263 (933)
T ss_pred             ---EEeeeccCCcEEEEeccc
Confidence               999999999999999984

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.87  E-value=3.1e-20  Score=155.72  Aligned_cols=237  Identities=23%  Similarity=0.346  Sum_probs=171.5

Q ss_pred             cCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECCCCe------------EEEEEecCC----ceE--EEEe-C-CCEEE
Q 016224          147 EGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQ------------CAGVINLGG----EVG--CMIS-E-GPWIF  205 (393)
Q Consensus       147 ~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~~~~------------~~~~~~~~~----~~~--~~~~-~-~~~l~  205 (393)
                      ..|.+.|.++...+ .++++++|+.||.|.+||++...            ++-..+++.    .+.  .+.+ + |-+..
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            45889999999977 78999999999999999997543            110111111    111  1223 3 44444


Q ss_pred             EEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC-----EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEE
Q 016224          206 IGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-----LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLV  280 (393)
Q Consensus       206 ~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~-----~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~  280 (393)
                      .+.|.++++||..+-+.......++.|++-+++|-     ++++|..+-.|++.|+..+    ...+.+.+|...|.++.
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG----s~sH~LsGHr~~vlaV~  195 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG----SFSHTLSGHRDGVLAVE  195 (397)
T ss_pred             ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC----cceeeeccccCceEEEE
Confidence            45999999999999888877777788888888773     8999999999999999998    66789999999999999


Q ss_pred             EcCC---EEEEecCCCcEEEeeCCCc-ceeeEe--------------ccCccceEEEEEc--CCEEEEEeCCCcEEEEEc
Q 016224          281 VGAN---KLYSGSMDNSIRVWNLETL-QCIQTL--------------TEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFA  340 (393)
Q Consensus       281 ~~~~---~l~sg~~dg~i~iwd~~~~-~~~~~~--------------~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~  340 (393)
                      |++.   .|++|+.||.|++||++.- -+...+              ..|.+.+..++|.  +.++++++.|..+++|+.
T Consensus       196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~  275 (397)
T KOG4283|consen  196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM  275 (397)
T ss_pred             eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence            9865   5999999999999999853 233333              3567788999998  789999999999999999


Q ss_pred             CCCcceEEEEee---cC---------CccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          341 TDSGNLEVTYTH---NE---------EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       341 ~~~~~~~~~~~~---~~---------~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      .+++....-.+.   +.         ....-.+.+.|.. +.-.|++..+-..|+.|+..
T Consensus       276 ~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~-~~lall~~~sgs~ir~l~~h  334 (397)
T KOG4283|consen  276 ESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPND-GSLALLNLLEGSFVRRLSTH  334 (397)
T ss_pred             ccCcccccccccccccccccceEEEeecccceEEEEecC-CeEEEEEccCceEEEeeecc
Confidence            876543222211   00         0001123344444 44466666666677777765

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.87  E-value=2.3e-20  Score=171.13  Aligned_cols=265  Identities=19%  Similarity=0.302  Sum_probs=183.7

Q ss_pred             EEEecCCCeEEEEECCCC-----cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEE--Ee-cCCc
Q 016224          122 CMYGEKCKFLHSWTVGDG-----FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV--IN-LGGE  193 (393)
Q Consensus       122 ~~~g~~dg~i~vwd~~~~-----~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~--~~-~~~~  193 (393)
                      ++.+..||.|.++|...-     .+.+.....|...|..+.|-|....|++++.|.++++||+.+.+++..  +. +...
T Consensus        67 LavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~S  146 (720)
T KOG0321|consen   67 LAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGS  146 (720)
T ss_pred             EEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccc
Confidence            446889999999998743     123466778999999999999778999999999999999999888766  32 2233


Q ss_pred             e--EEEEeCCCEEE-E-EcCCeEEEEECCCCcee----------------------------eecCCC----CcEEEEEE
Q 016224          194 V--GCMISEGPWIF-I-GVTNFVKAWNTQTNTDL----------------------------SLSGPV----GQVYAMAV  237 (393)
Q Consensus       194 ~--~~~~~~~~~l~-~-~~~~~i~v~d~~~~~~~----------------------------~~~~~~----~~v~~l~~  237 (393)
                      +  .++.+.+..++ + |.|+.|.|||++....-                            ....+.    +.|+.+.|
T Consensus       147 vkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f  226 (720)
T KOG0321|consen  147 VKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF  226 (720)
T ss_pred             cchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE
Confidence            3  33444444433 4 48999999998755410                            001122    23555666


Q ss_pred             eCC-EEEEEeC-CCcEEEEEeccCCccccC--c--eeecCc---eeeEEEEEEc--CCEEEEecCCCcEEEeeCCCc--c
Q 016224          238 GND-LLFAGTQ-DGAILAWKFNVTTNCFEP--A--ASLKGH---SLAVVSLVVG--ANKLYSGSMDNSIRVWNLETL--Q  304 (393)
Q Consensus       238 ~~~-~l~~~~~-dg~I~vwd~~~~~~~~~~--~--~~~~~~---~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~--~  304 (393)
                      -.+ .||+++. |+.|+|||++.....++.  .  ..+..|   ...+.++..+  |.+|++.+.|+.|++|++.+.  .
T Consensus       227 kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s  306 (720)
T KOG0321|consen  227 KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS  306 (720)
T ss_pred             eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC
Confidence            544 8888887 999999999986543221  1  122223   3455666665  688888888999999999863  3


Q ss_pred             eeeEeccCccc---e-EEEEEcCCEEEEEeCCCcEEEEEcCCCcce-EEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC
Q 016224          305 CIQTLTEHTSV---V-MSLLCWDQFLLSCSLDKTIKVWFATDSGNL-EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND  379 (393)
Q Consensus       305 ~~~~~~~~~~~---v-~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d  379 (393)
                      ++..+.++...   + ..+.+++.++++|+.|...++|.+.+.+.. ..+.+|..  .|+.++|.|....  -++++++|
T Consensus       307 P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~--eVt~V~w~pS~~t--~v~TcSdD  382 (720)
T KOG0321|consen  307 PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTR--EVTTVRWLPSATT--PVATCSDD  382 (720)
T ss_pred             chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcce--EEEEEeeccccCC--CceeeccC
Confidence            34444444322   1 345566899999999999999999876543 33444544  4888888876543  26777999


Q ss_pred             CeEEEEeCCce
Q 016224          380 NSVRFYDLPSV  390 (393)
Q Consensus       380 g~I~iwd~~s~  390 (393)
                      ..+++|++..+
T Consensus       383 ~~~kiW~l~~~  393 (720)
T KOG0321|consen  383 FRVKIWRLSNG  393 (720)
T ss_pred             cceEEEeccCc
Confidence            99999999654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=3.8e-20  Score=163.62  Aligned_cols=280  Identities=15%  Similarity=0.161  Sum_probs=199.7

Q ss_pred             cceeecceEEeeEecCc----EEEecCCCeEEEEECC---CCcEEEEEecCCcCCEEEEEecC-CCCEEEEEeCCCcEEE
Q 016224          105 RAVIKTDILCRNWVQGN----CMYGEKCKFLHSWTVG---DGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRV  176 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~----~~~g~~dg~i~vwd~~---~~~~~~~~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~i  176 (393)
                      ...+...|+|++|.|..    +++|+..|.|-+||+.   ....-+..+..|..+|.+|.|+| +-..+++.|.||+|++
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence            44567799999999752    4469999999999994   22345677889999999999999 4578999999999999


Q ss_pred             EECCCCeEEEEEecCCceEEEE------eCCCEEEEEcCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC---EEEEE
Q 016224          177 WDCASGQCAGVINLGGEVGCMI------SEGPWIFIGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAG  245 (393)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~---~l~~~  245 (393)
                      -|++.......+.....-..+.      .+...++...-|...+||.+++..-  .+.-|...|..++++|-   +|+++
T Consensus       262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~  341 (498)
T KOG4328|consen  262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATA  341 (498)
T ss_pred             eeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeec
Confidence            9998876554444432221111      2445566666679999999987653  66778889999999986   99999


Q ss_pred             eCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCC----CcceeeEeccCcc----c
Q 016224          246 TQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLE----TLQCIQTLTEHTS----V  315 (393)
Q Consensus       246 ~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~----~~~~~~~~~~~~~----~  315 (393)
                      +.|++.+|||++.-.....+......|...|.+..|+  +..|++.+.|..|+|||..    ...+..++. |..    .
T Consensus       342 s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~Rw  420 (498)
T KOG4328|consen  342 SLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRW  420 (498)
T ss_pred             ccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCccccc
Confidence            9999999999998765444455666799999988886  3469999999999999983    333444443 221    1


Q ss_pred             e--EEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEE-EEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          316 V--MSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLA-LCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       316 v--~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      +  ....|.  ..++++|-.-..|-|+|-..++.+..+...... .|.+ ..|+|-..  .+++.++..|.|+||--+
T Consensus       421 lT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~~~--~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  421 LTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPMRD--TLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             ccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccccc--ceeccCCccceEEEEecC
Confidence            1  233455  458889988899999998665544444433221 2333 45666543  144455567889988644

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.87  E-value=2e-20  Score=167.08  Aligned_cols=266  Identities=16%  Similarity=0.264  Sum_probs=205.3

Q ss_pred             cceEEeeE-e-cCcEEEecCCCeEEEEECCCC--cEEEEEecC--CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 016224          110 TDILCRNW-V-QGNCMYGEKCKFLHSWTVGDG--FKLLTQLEG--HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ  183 (393)
Q Consensus       110 ~~i~c~~~-~-~~~~~~g~~dg~i~vwd~~~~--~~~~~~l~~--h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~  183 (393)
                      ++|.|..- + +...|+.+..|.|+|||+...  ..++..|..  ....|.++.+.|||+.|++|+.-.+|.|||+....
T Consensus       419 GEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapT  498 (705)
T KOG0639|consen  419 GEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPT  498 (705)
T ss_pred             CcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCC
Confidence            46666654 3 346667777889999999742  234444443  45789999999999999999999999999998765


Q ss_pred             EEEEEecCC--c---eEEEEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEE
Q 016224          184 CAGVINLGG--E---VGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAW  254 (393)
Q Consensus       184 ~~~~~~~~~--~---~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vw  254 (393)
                      ..-..+...  .   ...+.++.++.++. .||.|.|||+.....+ .+.+|.+.+.||.++++  .|.+|+-|.+|+.|
T Consensus       499 prikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcW  578 (705)
T KOG0639|consen  499 PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCW  578 (705)
T ss_pred             cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeeh
Confidence            433333222  1   12344678877765 9999999999999888 89999999999999987  99999999999999


Q ss_pred             EeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEe
Q 016224          255 KFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCS  330 (393)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s  330 (393)
                      |++.+..    ... ......|.++...  +++|+.|-..+.+.|.... +.....+..|...|.++.|.  |+++++.+
T Consensus       579 Dlregrq----lqq-hdF~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStG  652 (705)
T KOG0639|consen  579 DLREGRQ----LQQ-HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTG  652 (705)
T ss_pred             hhhhhhh----hhh-hhhhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecC
Confidence            9998742    111 1234567777654  6799999999999988865 44456677899999999998  99999999


Q ss_pred             CCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          331 LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       331 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      .|.-+..|...-+..+.   ...+...|++...+.+..   +|+||+.|..-.||.+
T Consensus       653 kDnlLnawrtPyGasiF---qskE~SsVlsCDIS~ddk---yIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  653 KDNLLNAWRTPYGASIF---QSKESSSVLSCDISFDDK---YIVTGSGDKKATVYEV  703 (705)
T ss_pred             chhhhhhccCcccccee---eccccCcceeeeeccCce---EEEecCCCcceEEEEE
Confidence            99999999887665443   334455688888776655   9999999999888876

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.86  E-value=1.6e-21  Score=167.66  Aligned_cols=237  Identities=16%  Similarity=0.229  Sum_probs=184.2

Q ss_pred             EEEEEecCCcCCEEEEEecCCC-CEEEEEeCCCcEEEEECCCCeEEEEEecCC-ceEEEE-eCCCEEEEEcCCeEEEEEC
Q 016224          141 KLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVINLGG-EVGCMI-SEGPWIFIGVTNFVKAWNT  217 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~~i~v~d~  217 (393)
                      ..+..|.+|.+.|.+++=+|.. ..++||+.||.|+|||+.+..+..++..+. .+..+. ..+.++.+|.|.+|+.|-+
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeec
Confidence            4567789999999999999977 789999999999999999999999998876 444443 3577888899999999998


Q ss_pred             CCCceeeecCCCCcEEEEEEeC--CEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC---CEEEEecCC
Q 016224          218 QTNTDLSLSGPVGQVYAMAVGN--DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMD  292 (393)
Q Consensus       218 ~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~d  292 (393)
                      ......++ .....+..+.-+.  +.++++++  .|.|||.+..    .++..+.--...|.++.+++   ..|+++.+|
T Consensus       137 ~~~p~~ti-lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~----~Pv~smswG~Dti~svkfNpvETsILas~~sD  209 (433)
T KOG0268|consen  137 DGPPLHTI-LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD----NPVSSMSWGADSISSVKFNPVETSILASCASD  209 (433)
T ss_pred             cCCcceee-eccccccccccccccccccccCc--eeeecccccC----CccceeecCCCceeEEecCCCcchheeeeccC
Confidence            77422222 2234444554433  37777765  4899999876    56677776677889999985   368999999


Q ss_pred             CcEEEeeCCCcceeeEeccCccceEEEEEcC--CEEEEEeCCCcEEEEEcCCCcce-EEEEeecCCccEEEEEeeeCCCC
Q 016224          293 NSIRVWNLETLQCIQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDSGNL-EVTYTHNEEHGVLALCGMPDSEG  369 (393)
Q Consensus       293 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~  369 (393)
                      +.|.|||+++.++++.+. -.-..+.|+|++  ..++++++|..++.||++..... .....|.  ..|+++.|+|.+. 
T Consensus       210 rsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhv--sAV~dVdfsptG~-  285 (433)
T KOG0268|consen  210 RSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHV--SAVMDVDFSPTGQ-  285 (433)
T ss_pred             CceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccc--eeEEEeccCCCcc-
Confidence            999999999999887764 233457788885  36889999999999999876543 3333343  3499999999877 


Q ss_pred             CcEEEEEeCCCeEEEEeCCce
Q 016224          370 KPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       370 ~~~l~s~s~dg~I~iwd~~s~  390 (393)
                        -|++||.|.+|+||.+..+
T Consensus       286 --EfvsgsyDksIRIf~~~~~  304 (433)
T KOG0268|consen  286 --EFVSGSYDKSIRIFPVNHG  304 (433)
T ss_pred             --hhccccccceEEEeecCCC
Confidence              7999999999999998765

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=1.5e-21  Score=181.22  Aligned_cols=227  Identities=20%  Similarity=0.356  Sum_probs=186.7

Q ss_pred             ceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 016224          106 AVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ  183 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~  183 (393)
                      ..|...+-|+.....  .++.|+.|-.+-+|.+... -.+..|.+|..+|.+|.|+++..+|++|+.+|+|++||+++.+
T Consensus        25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp-~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk  103 (825)
T KOG0267|consen   25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP-NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK  103 (825)
T ss_pred             hhhhhhhceeeeeccceeeccCCCceeeccccccCC-chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence            345566777765332  4557999999999998876 5566799999999999999999999999999999999999877


Q ss_pred             EEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCc
Q 016224          184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN  261 (393)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~  261 (393)
                      .+++                                     +.+|...+..+.|+|-  +++.|+.|..+.+||++..  
T Consensus       104 ~vrt-------------------------------------Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~--  144 (825)
T KOG0267|consen  104 IVRT-------------------------------------LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK--  144 (825)
T ss_pred             hhhh-------------------------------------hhccccCcceeeeccceEEeccccccccceehhhhcc--
Confidence            6543                                     4688889999999998  7888999999999999976  


Q ss_pred             cccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcC--CEEEEEeCCCcEEE
Q 016224          262 CFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKV  337 (393)
Q Consensus       262 ~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~i  337 (393)
                        -+...+.+|...+..+.+.  |.+++.++.|.+++|||+..|+.+.+|..|.+.+.++.+++  -++++|+.|++|++
T Consensus       145 --Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f  222 (825)
T KOG0267|consen  145 --GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRF  222 (825)
T ss_pred             --CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeee
Confidence              5567778888877776664  67999999999999999999999999999999999999884  47889999999999


Q ss_pred             EEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC
Q 016224          338 WFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND  379 (393)
Q Consensus       338 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d  379 (393)
                      ||+++.+.+......  ...+.+..|.++..   .+++|..+
T Consensus       223 ~dletfe~I~s~~~~--~~~v~~~~fn~~~~---~~~~G~q~  259 (825)
T KOG0267|consen  223 WDLETFEVISSGKPE--TDGVRSLAFNPDGK---IVLSGEQI  259 (825)
T ss_pred             eccceeEEeeccCCc--cCCceeeeecCCce---eeecCchh
Confidence            999765544433332  45688999988766   67776554

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=9.2e-21  Score=154.91  Aligned_cols=205  Identities=20%  Similarity=0.225  Sum_probs=163.1

Q ss_pred             ecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeee
Q 016224          146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSL  225 (393)
Q Consensus       146 l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~  225 (393)
                      -..|++.|.++...--|++|||++.|++|+|+.++......                                  ....+
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~----------------------------------ll~~L   52 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSK----------------------------------LLAEL   52 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCce----------------------------------eeeEe
Confidence            35799999999998899999999999999999987654311                                  11267


Q ss_pred             cCCCCcEEEEEEe-CC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC----EEEEecCCCcEEE
Q 016224          226 SGPVGQVYAMAVG-ND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN----KLYSGSMDNSIRV  297 (393)
Q Consensus       226 ~~~~~~v~~l~~~-~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~l~sg~~dg~i~i  297 (393)
                      .+|.++|..+.|. |.   +|++++.||.|.||.-..+  .+........|...|.+++|-++    .|++++.||.|.|
T Consensus        53 ~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g--~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsv  130 (299)
T KOG1332|consen   53 TGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG--RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSV  130 (299)
T ss_pred             cCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC--chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEE
Confidence            8999999999994 44   9999999999999987766  35667778889999999998643    6999999999999


Q ss_pred             eeCCCc---ceeeEeccCccceEEEEEcC----------------CEEEEEeCCCcEEEEEcCCCcceE--EEEeecCCc
Q 016224          298 WNLETL---QCIQTLTEHTSVVMSLLCWD----------------QFLLSCSLDKTIKVWFATDSGNLE--VTYTHNEEH  356 (393)
Q Consensus       298 wd~~~~---~~~~~~~~~~~~v~~l~~~~----------------~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~  356 (393)
                      .+.++.   ........|.-.|++++|.+                +.|++|+.|..|+||+..+..-..  .+..|.  .
T Consensus       131 l~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~--d  208 (299)
T KOG1332|consen  131 LTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHK--D  208 (299)
T ss_pred             EEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcc--h
Confidence            988753   22334567999999999872                469999999999999987653222  233443  4


Q ss_pred             cEEEEEeeeCC-CCCcEEEEEeCCCeEEEEeCC
Q 016224          357 GVLALCGMPDS-EGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       357 ~v~~~~~~~~~-~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      .|..++|.|.- -...+|++++.||+|.||-..
T Consensus       209 wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  209 WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             hhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence            58899999864 234489999999999999765

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=9.6e-20  Score=155.72  Aligned_cols=262  Identities=15%  Similarity=0.164  Sum_probs=189.5

Q ss_pred             cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecC--CCCEEEEEeCCCcEEEEECCCCeEEEEEecC----Cce
Q 016224          121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS--GSDKLYSGSKDETVRVWDCASGQCAGVINLG----GEV  194 (393)
Q Consensus       121 ~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~----~~~  194 (393)
                      .++++-..|.|++||..++ +.+..+++|...+..+.|..  ....+.+|+.||+|++||++.......+...    .+.
T Consensus        42 ~vav~lSngsv~lyd~~tg-~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTG-QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eEEEEecCCeEEEEeccch-hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            3667889999999999998 89999999999999999966  4578999999999999999987666555433    234


Q ss_pred             EEEEe--CCCEEEEE-----cCCeEEEEECCCCce-e--eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCc
Q 016224          195 GCMIS--EGPWIFIG-----VTNFVKAWNTQTNTD-L--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTN  261 (393)
Q Consensus       195 ~~~~~--~~~~l~~~-----~~~~i~v~d~~~~~~-~--~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~  261 (393)
                      .++..  .+.++++|     .+-.|.+||++..+. +  -...|.+.|++++|+|.   +|++|+.||-|.+||+.....
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            45543  56777776     345899999998877 3  45679999999999886   999999999999999987643


Q ss_pred             cccCceeecCceeeEEEEEEcCC---EEEEecCCCcEEEeeCCCcceeeEeccCc-------------cceEEEEEc-CC
Q 016224          262 CFEPAASLKGHSLAVVSLVVGAN---KLYSGSMDNSIRVWNLETLQCIQTLTEHT-------------SVVMSLLCW-DQ  324 (393)
Q Consensus       262 ~~~~~~~~~~~~~~v~~l~~~~~---~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-------------~~v~~l~~~-~~  324 (393)
                      . ..+.....|...|..+.|.++   .|.+-+...+..+|+++.+.+...+....             ..|...... ..
T Consensus       201 e-DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~  279 (376)
T KOG1188|consen  201 E-DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD  279 (376)
T ss_pred             h-hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence            3 334444567888999999754   69999999999999999887655553221             011122111 23


Q ss_pred             EEEEEeC-CCcEEEEEcCC---C---cceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          325 FLLSCSL-DKTIKVWFATD---S---GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       325 ~l~s~s~-dg~i~iwd~~~---~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      .++.++. -++..++-+..   +   ..+..+.++ +..-|.++.|.....   +++||++||.+.+|..+
T Consensus       280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~-~~eiVR~i~~~~~~~---~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG-HEEIVRDILFDVKND---VLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             eEEEeccccCceeEEEeeecccccccCccccccCC-cHHHHHHHhhhcccc---eeeccCCCceEEEEecC
Confidence            4444444 56666654431   1   122223332 233477777764444   99999999999999953

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.85  E-value=7.5e-20  Score=158.16  Aligned_cols=217  Identities=20%  Similarity=0.254  Sum_probs=163.4

Q ss_pred             EecCCcCCEEEEEecCCC--CEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCce
Q 016224          145 QLEGHQKVVSGITLPSGS--DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTD  222 (393)
Q Consensus       145 ~l~~h~~~I~~i~~s~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~  222 (393)
                      ..-.|.+.|..+.-++-+  .+.++=+..|.|+||++...  +..+...                   .+.+-+......
T Consensus       146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~--l~~l~~~-------------------~~~~~~s~~~Pl  204 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPH--LNALSEP-------------------GLEVKDSEFRPL  204 (440)
T ss_pred             cccccccccceeeecccCCcceeeeecccCcEEEEEchhh--hhhhcCc-------------------cccccccccCce
Confidence            344688888888877644  56666677899999998542  1111100                   011112233334


Q ss_pred             eeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC---CEEEEecCCCcEE
Q 016224          223 LSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIR  296 (393)
Q Consensus       223 ~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~  296 (393)
                      .++.+|...=+.|+|+|-   .|++|.--+.|++|...++.-. .-...+.+|...|-.|.|++   +.|++++.||+|+
T Consensus       205 ~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~-vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIr  283 (440)
T KOG0302|consen  205 FTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK-VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIR  283 (440)
T ss_pred             EEecccCccceeeecccccccccccCccccceEeeeeccCcee-ecCccccccccchhhhccCCccCceEEeeecCceEE
Confidence            478899999999999995   7899989999999998875422 12345667999999999964   5899999999999


Q ss_pred             EeeCCCc---ceeeEeccCccceEEEEEcC--CEEEEEeCCCcEEEEEcCCC---cceEEEEeecCCccEEEEEeeeCCC
Q 016224          297 VWNLETL---QCIQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDS---GNLEVTYTHNEEHGVLALCGMPDSE  368 (393)
Q Consensus       297 iwd~~~~---~~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~  368 (393)
                      |||+|.+   .++.+ +.|.+.|+.|.|+.  .+|++|+.||+++|||++..   ..+..+..|...  |+++.|+|...
T Consensus       284 IWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p--ItsieW~p~e~  360 (440)
T KOG0302|consen  284 IWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP--ITSIEWHPHED  360 (440)
T ss_pred             EEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC--eeEEEeccccC
Confidence            9999987   33333 78999999999993  38999999999999999854   345566666654  99999998754


Q ss_pred             CCcEEEEEeCCCeEEEEeCC
Q 016224          369 GKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       369 ~~~~l~s~s~dg~I~iwd~~  388 (393)
                      .  .|++++.|.+|.|||+.
T Consensus       361 s--~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  361 S--VIAASGEDNQITIWDLS  378 (440)
T ss_pred             c--eEEeccCCCcEEEEEee
Confidence            3  79999999999999985

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.2e-18  Score=161.04  Aligned_cols=235  Identities=19%  Similarity=0.345  Sum_probs=184.8

Q ss_pred             CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE-EEEEecC--CceE--EEEeCCCEEEEEcCCeEEEEECCCCcee
Q 016224          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC-AGVINLG--GEVG--CMISEGPWIFIGVTNFVKAWNTQTNTDL  223 (393)
Q Consensus       149 h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~--~~~~--~~~~~~~~l~~~~~~~i~v~d~~~~~~~  223 (393)
                      -..+|++|||+.+++.||.+-.||.|.||++..+=. ...+..+  ..+.  ++...++++.++.+|.|.-||+.+.+..
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~  103 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQK  103 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCcee
Confidence            457999999999999999999999999999988643 3344433  2233  3344666667789999999999999887


Q ss_pred             -eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEe
Q 016224          224 -SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVW  298 (393)
Q Consensus       224 -~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iw  298 (393)
                       .+....+.|.+++.+|.  .+++|+.||.++.++...+..  +....+....+.+.+++|+++  .+++|+.||.|++|
T Consensus       104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I--~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw  181 (691)
T KOG2048|consen  104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI--TYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW  181 (691)
T ss_pred             EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE--EEEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence             77788899999999987  999999999777776665533  333455556789999999855  68999999999999


Q ss_pred             eCCCcceeeEec--------cCccceEEEEEc-CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCC
Q 016224          299 NLETLQCIQTLT--------EHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEG  369 (393)
Q Consensus       299 d~~~~~~~~~~~--------~~~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  369 (393)
                      |..++..+....        ....-|.++.+- ...|++|...|+|++||...+..++....|..+  |.+++..++.+ 
T Consensus       182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~ad--Vl~Lav~~~~d-  258 (691)
T KOG2048|consen  182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDAD--VLALAVADNED-  258 (691)
T ss_pred             EcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcc--eeEEEEcCCCC-
Confidence            999887766221        123345666665 789999999999999999988888888777776  77777665544 


Q ss_pred             CcEEEEEeCCCeEEEEeCCce
Q 016224          370 KPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       370 ~~~l~s~s~dg~I~iwd~~s~  390 (393)
                        ++++++.|+.|..|...+.
T Consensus       259 --~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  259 --RVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             --eEEEccCCCceEEEEecCC
Confidence              8999999999988877654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=2.3e-19  Score=163.56  Aligned_cols=242  Identities=21%  Similarity=0.282  Sum_probs=164.3

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEe----CCCEEEEEcCCeEEEEE
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS----EGPWIFIGVTNFVKAWN  216 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~i~v~d  216 (393)
                      .+-..+.+|++.|.+|...|.|..|++|+.||+|+||.+.++.|++++...+.+.++..    +..+|+++....+.+.+
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn  470 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN  470 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence            34457789999999999999999999999999999999999999999988877766542    33344444333333333


Q ss_pred             CCCCc--------------------------------------eeeecCCCCcEEEEEEeCC--EEEEEeC---CCcEEE
Q 016224          217 TQTNT--------------------------------------DLSLSGPVGQVYAMAVGND--LLFAGTQ---DGAILA  253 (393)
Q Consensus       217 ~~~~~--------------------------------------~~~~~~~~~~v~~l~~~~~--~l~~~~~---dg~I~v  253 (393)
                      ..-+.                                      ......|...|..+.|+..  +|++...   ...|.|
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli  550 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI  550 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence            22110                                      0012223444555555443  4444332   234555


Q ss_pred             EEeccCCcc--c-----------------------------------cCceeecCceeeEEEEEEc--CCEEEEecCCCc
Q 016224          254 WKFNVTTNC--F-----------------------------------EPAASLKGHSLAVVSLVVG--ANKLYSGSMDNS  294 (393)
Q Consensus       254 wd~~~~~~~--~-----------------------------------~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~  294 (393)
                      +++.....+  +                                   ++++.+......|..++.+  |+.|+.|+.|+.
T Consensus       551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k  630 (733)
T KOG0650|consen  551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK  630 (733)
T ss_pred             EecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe
Confidence            544332111  0                                   2233333334445555554  689999999999


Q ss_pred             EEEeeCCC-cceeeEeccCccceEEEEEcCC--EEEEEeCCCcEEEEEcC------CCc---ceEEEEeecC--CccEEE
Q 016224          295 IRVWNLET-LQCIQTLTEHTSVVMSLLCWDQ--FLLSCSLDKTIKVWFAT------DSG---NLEVTYTHNE--EHGVLA  360 (393)
Q Consensus       295 i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~dg~i~iwd~~------~~~---~~~~~~~~~~--~~~v~~  360 (393)
                      +..+|+.- .++.+++..|...+++++++++  ++++|+.||++.|+.-.      ..-   .+..+.+|..  ...|+.
T Consensus       631 ~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd  710 (733)
T KOG0650|consen  631 MCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLD  710 (733)
T ss_pred             eEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEe
Confidence            99999974 4678899999999999999975  69999999999998532      111   2333444433  356889


Q ss_pred             EEeeeCCCCCcEEEEEeCCCeEEEE
Q 016224          361 LCGMPDSEGKPVLLCSCNDNSVRFY  385 (393)
Q Consensus       361 ~~~~~~~~~~~~l~s~s~dg~I~iw  385 (393)
                      ..|+|..+   +|++++.||+|++|
T Consensus       711 ~~wHP~qp---WLfsAGAd~tirlf  732 (733)
T KOG0650|consen  711 TIWHPRQP---WLFSAGADGTIRLF  732 (733)
T ss_pred             ecccCCCc---eEEecCCCceEEee
Confidence            99999877   99999999999998

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=2e-21  Score=180.38  Aligned_cols=212  Identities=26%  Similarity=0.438  Sum_probs=179.2

Q ss_pred             CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEE
Q 016224          128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIG  207 (393)
Q Consensus       128 dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  207 (393)
                      .-.+++||..       .+..|...|.++..-..++.+++|+.|..+-+|.+.....+.                     
T Consensus        13 ~t~Lr~~~~~-------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---------------------   64 (825)
T KOG0267|consen   13 ATKLRVWDTR-------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---------------------   64 (825)
T ss_pred             eeccccccch-------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---------------------
Confidence            3455677643       235688888888887778899999999999899886544332                     


Q ss_pred             cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--C
Q 016224          208 VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--A  283 (393)
Q Consensus       208 ~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~  283 (393)
                                      .+.+|...|.++.|+..  +|++|+.+|+|++||+...    +.++.+.+|...+.++.|+  +
T Consensus        65 ----------------S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA----k~vrtLtgh~~~~~sv~f~P~~  124 (825)
T KOG0267|consen   65 ----------------SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA----KIVRTLTGHLLNITSVDFHPYG  124 (825)
T ss_pred             ----------------eeeccCCcceeeecCcchhhhcccccCCceeeeehhhh----hhhhhhhccccCcceeeeccce
Confidence                            35789999999999987  8999999999999999977    6677899999999999998  4


Q ss_pred             CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEE
Q 016224          284 NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLAL  361 (393)
Q Consensus       284 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~  361 (393)
                      .+++.|+.|..+++||++..-+.+.+.+|...+..+.++  |.++++++.|..++|||+..++.+..+..|...  +..+
T Consensus       125 ~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~--v~sl  202 (825)
T KOG0267|consen  125 EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGK--VQSL  202 (825)
T ss_pred             EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccccc--cccc
Confidence            588999999999999999999999999999999999988  679999999999999999888777777766654  6777


Q ss_pred             EeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          362 CGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       362 ~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      .|+|..-   ++++|+.|++|++||++++++
T Consensus       203 e~hp~e~---Lla~Gs~d~tv~f~dletfe~  230 (825)
T KOG0267|consen  203 EFHPLEV---LLAPGSSDRTVRFWDLETFEV  230 (825)
T ss_pred             ccCchhh---hhccCCCCceeeeeccceeEE
Confidence            7777654   899999999999999998876

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.4e-19  Score=153.33  Aligned_cols=206  Identities=19%  Similarity=0.279  Sum_probs=148.6

Q ss_pred             EEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCcee
Q 016224          144 TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL  223 (393)
Q Consensus       144 ~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~  223 (393)
                      ..|++|.+.|++++|+.||++|+|++.|++|+||+++.-....                                 -+.+
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e---------------------------------Hr~~  126 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE---------------------------------HRCI  126 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh---------------------------------hhHh
Confidence            4678999999999999999999999999999999987632110                                 0111


Q ss_pred             eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccC--------ceeecCceeeEEEEEE--cCCEEEEec
Q 016224          224 SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEP--------AASLKGHSLAVVSLVV--GANKLYSGS  290 (393)
Q Consensus       224 ~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~--------~~~~~~~~~~v~~l~~--~~~~l~sg~  290 (393)
                      ...-.-+..+.+.|.||   .++..-...++++|.+...+...-.        ....+.|...+..+-.  ++.+|++++
T Consensus       127 R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas  206 (420)
T KOG2096|consen  127 RQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSAS  206 (420)
T ss_pred             hccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEec
Confidence            11222335678889988   6666667778999987654321000        1112335556655544  356899999


Q ss_pred             CCCcEEEeeCCCcceeeEeccCccceE--EEEEcCCEEEEEeCCCcEEEEEcCCC--------cceEEEEeecCCccEEE
Q 016224          291 MDNSIRVWNLETLQCIQTLTEHTSVVM--SLLCWDQFLLSCSLDKTIKVWFATDS--------GNLEVTYTHNEEHGVLA  360 (393)
Q Consensus       291 ~dg~i~iwd~~~~~~~~~~~~~~~~v~--~l~~~~~~l~s~s~dg~i~iwd~~~~--------~~~~~~~~~~~~~~v~~  360 (393)
                      .|..|.+||++ |+.+.++......-+  ++..+|+++++++..-.|++|.+--.        .....+.+|.  ..|+.
T Consensus       207 ~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~--saV~~  283 (420)
T KOG2096|consen  207 LDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ--SAVLA  283 (420)
T ss_pred             CCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch--hheee
Confidence            99999999999 899988876554443  44455899999999999999986321        1233444554  45999


Q ss_pred             EEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          361 LCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       361 ~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      ++|++++.   .++|.|.||+++|||+.
T Consensus       284 ~aFsn~S~---r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  284 AAFSNSST---RAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             eeeCCCcc---eeEEEecCCcEEEeecc
Confidence            99998877   89999999999999975

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=9.8e-20  Score=170.42  Aligned_cols=229  Identities=17%  Similarity=0.280  Sum_probs=169.3

Q ss_pred             CEEEEEecCCCCEEEEEeCCCcEEEEECCCCe----EEEEEecCCceEE-------EEeCCCEEEE-EcCCeEEEEECCC
Q 016224          152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQ----CAGVINLGGEVGC-------MISEGPWIFI-GVTNFVKAWNTQT  219 (393)
Q Consensus       152 ~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~~~~-------~~~~~~~l~~-~~~~~i~v~d~~~  219 (393)
                      ...+|...++-..|+.++.. .++|+.+....    +...+........       -....++|++ +..|.|.+||+..
T Consensus        41 ~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk  119 (839)
T KOG0269|consen   41 KANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK  119 (839)
T ss_pred             ccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence            34455666777777777654 67787765432    2222111111100       1124555665 4788999999987


Q ss_pred             ---Ccee-eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CCEEEEe
Q 016224          220 ---NTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSG  289 (393)
Q Consensus       220 ---~~~~-~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg  289 (393)
                         ++.+ .+..|...+.++.|++.   +|++|++||.|++||++..    .....+.+....|..+.|.   ++.|+++
T Consensus       120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~----~S~~t~~~nSESiRDV~fsp~~~~~F~s~  195 (839)
T KOG0269|consen  120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK----KSKSTFRSNSESIRDVKFSPGYGNKFASI  195 (839)
T ss_pred             cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc----cccccccccchhhhceeeccCCCceEEEe
Confidence               3333 78899999999999764   9999999999999999987    4456666678888888886   5689999


Q ss_pred             cCCCcEEEeeCCC-cceeeEeccCccceEEEEEcC--CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeC
Q 016224          290 SMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD  366 (393)
Q Consensus       290 ~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  366 (393)
                      ...|.+++||++. .++...+.+|.++|.++.|++  .+||||+.|++|+|||..+.+...... .....++..+.|-|.
T Consensus       196 ~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~t-InTiapv~rVkWRP~  274 (839)
T KOG0269|consen  196 HDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHT-INTIAPVGRVKWRPA  274 (839)
T ss_pred             cCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeE-EeecceeeeeeeccC
Confidence            9999999999986 566788899999999999994  599999999999999997655433333 233456889999998


Q ss_pred             CCCCcEEEEEe--CCCeEEEEeCC
Q 016224          367 SEGKPVLLCSC--NDNSVRFYDLP  388 (393)
Q Consensus       367 ~~~~~~l~s~s--~dg~I~iwd~~  388 (393)
                      .+.  .|++++  .|-.|+|||+.
T Consensus       275 ~~~--hLAtcsmv~dtsV~VWDvr  296 (839)
T KOG0269|consen  275 RSY--HLATCSMVVDTSVHVWDVR  296 (839)
T ss_pred             ccc--hhhhhhccccceEEEEeec
Confidence            663  566665  48899999986

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.84  E-value=2.3e-18  Score=154.14  Aligned_cols=272  Identities=15%  Similarity=0.212  Sum_probs=202.8

Q ss_pred             eeecceEEeeEecC-cEEEecCCCeEEEEECCCC----------c-----------------------------EEEEEe
Q 016224          107 VIKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDG----------F-----------------------------KLLTQL  146 (393)
Q Consensus       107 ~~~~~i~c~~~~~~-~~~~g~~dg~i~vwd~~~~----------~-----------------------------~~~~~l  146 (393)
                      .|+..|.|+....+ .+++|+.|..|..||-.-.          +                             ....+.
T Consensus       285 aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v  364 (626)
T KOG2106|consen  285 AHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTV  364 (626)
T ss_pred             ecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEE
Confidence            68889999988755 6778999999999983200          0                             001233


Q ss_pred             cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEE--EeCCCEEEEE-cCCeEEEEECCCCcee
Q 016224          147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTDL  223 (393)
Q Consensus       147 ~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~~  223 (393)
                      ++|......++.+|+.+.++|++.|++|++|+  ..+.+.+.....+..+.  .+.+ .+++| ..|...+.|.++...+
T Consensus       365 ~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv  441 (626)
T KOG2106|consen  365 QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLV  441 (626)
T ss_pred             EecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeE
Confidence            57999999999999999999999999999999  56677666666665554  4667 66666 7889999999998888


Q ss_pred             eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEee
Q 016224          224 SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWN  299 (393)
Q Consensus       224 ~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd  299 (393)
                      ++.....++++++|+|+  +||+|+.|+.|++|.+......+.......+  .+|+.+.|+  +++|.+-+.|-.|..|.
T Consensus       442 ~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  442 TIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             EEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC--ceeEEeeecCCCceEEeccCceEEEEEc
Confidence            77666999999999998  9999999999999999887665544444444  889999986  66899999999999996


Q ss_pred             CCCcceeeEec------------------cCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcc---eEEEEeecCCc
Q 016224          300 LETLQCIQTLT------------------EHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGN---LEVTYTHNEEH  356 (393)
Q Consensus       300 ~~~~~~~~~~~------------------~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~  356 (393)
                      ....+.+...+                  .+...+..++-+  .+++++|...|+|++|...-.+.   ......|.  .
T Consensus       520 ~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs--~  597 (626)
T KOG2106|consen  520 PSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHS--S  597 (626)
T ss_pred             cccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeecccc--c
Confidence            54333222211                  122223223222  57899999999999998753332   22333343  4


Q ss_pred             cEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          357 GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       357 ~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      .+..++|.....   .|++.+.|..|..|++.
T Consensus       598 ~vt~V~Fl~~d~---~li~tg~D~Si~qW~lv  626 (626)
T KOG2106|consen  598 HVTNVAFLCKDS---HLISTGKDTSIMQWRLV  626 (626)
T ss_pred             eeEEEEEeeCCc---eEEecCCCceEEEEEeC
Confidence            488899987655   67777799999999873

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=4.3e-18  Score=162.37  Aligned_cols=255  Identities=17%  Similarity=0.169  Sum_probs=195.7

Q ss_pred             ceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 016224          106 AVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ  183 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~  183 (393)
                      ..|....+-+.|.++  .+++.+.||.|++|+.....+.-.++.-+...|.+++..  +.+|++|+.+++|.+|...+++
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence            345555666777655  455799999999999765422233344488889888875  4599999999999999998764


Q ss_pred             ---EEEEEecCCceEEEEeCCCEEEEEc-CCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEe
Q 016224          184 ---CAGVINLGGEVGCMISEGPWIFIGV-TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF  256 (393)
Q Consensus       184 ---~~~~~~~~~~~~~~~~~~~~l~~~~-~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~  256 (393)
                         .+..+..+-...++..+|.++++|. |-.|++.++...... .+.+|..+|.++.|+|+  +||+.+.||.|++||+
T Consensus        88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~  167 (933)
T KOG1274|consen   88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL  167 (933)
T ss_pred             ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence               5667777777888888999999874 558999999877655 89999999999999998  9999999999999999


Q ss_pred             ccCCccccCceeec---Cc-eeeEEEEEEcC--CEEEEecCCCcEEEeeCCCcceeeEecc--CccceEEEEEc--CCEE
Q 016224          257 NVTTNCFEPAASLK---GH-SLAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQCIQTLTE--HTSVVMSLLCW--DQFL  326 (393)
Q Consensus       257 ~~~~~~~~~~~~~~---~~-~~~v~~l~~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~--~~~l  326 (393)
                      ..+.....+.....   .. ...+..++|++  ..|+....|+.|++|+..+++....+..  +...+..+.|+  |+||
T Consensus       168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi  247 (933)
T KOG1274|consen  168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI  247 (933)
T ss_pred             ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE
Confidence            98743221111111   11 33456677764  4788889999999999999998888764  44458888888  8899


Q ss_pred             EEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCC
Q 016224          327 LSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE  368 (393)
Q Consensus       327 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  368 (393)
                      |+++.||.|.|||..+.      ..|.....|.+++|.|+.+
T Consensus       248 AAs~~~g~I~vWnv~t~------~~~~~~~~Vc~~aw~p~~n  283 (933)
T KOG1274|consen  248 AASTLDGQILVWNVDTH------ERHEFKRAVCCEAWKPNAN  283 (933)
T ss_pred             eeeccCCcEEEEecccc------hhccccceeEEEecCCCCC
Confidence            99999999999999762      2255555688889988766

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.83  E-value=3.4e-19  Score=151.62  Aligned_cols=244  Identities=17%  Similarity=0.234  Sum_probs=185.0

Q ss_pred             eeecceEEeeEecC------cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCC-CEEEEEeCCCcEEEEEC
Q 016224          107 VIKTDILCRNWVQG------NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDC  179 (393)
Q Consensus       107 ~~~~~i~c~~~~~~------~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~-~~l~s~s~dg~v~iwd~  179 (393)
                      .++...+-+.|+-+      -+++|+.-|.|+|.|+.++ ++...+.+|...|..|.|.|+. ++|+++|.|.+|++|++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~-~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI  165 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG-QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI  165 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh-hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence            34555566666522      2456889999999999998 8999999999999999999964 79999999999999999


Q ss_pred             CCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEec
Q 016224          180 ASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN  257 (393)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~  257 (393)
                      ++..|+..+..                                  ..+|.+.|.++.|+.+  +|++++.|.+|++|++.
T Consensus       166 ~~~~Cv~VfGG----------------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~  211 (385)
T KOG1034|consen  166 QTDVCVAVFGG----------------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN  211 (385)
T ss_pred             cCCeEEEEecc----------------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence            99999877642                                  3589999999999887  99999999999999988


Q ss_pred             cCCcc--cc---------------------Cc-eeecCceeeEEEEEEcCCEEEEecCCCcEEEeeC-CCcce-------
Q 016224          258 VTTNC--FE---------------------PA-ASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNL-ETLQC-------  305 (393)
Q Consensus       258 ~~~~~--~~---------------------~~-~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~-~~~~~-------  305 (393)
                      .....  .+                     +. .+..-|...|-|+.|-++++++-+-++.|..|.. +-.+.       
T Consensus       212 ~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~  291 (385)
T KOG1034|consen  212 VKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPP  291 (385)
T ss_pred             hhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCC
Confidence            42110  00                     00 1223467777777788999999999999999987 21221       


Q ss_pred             ------eeEeccCccceEEEEEc----CCEEEEEeCCCcEEEEEcCCCcce--EEEEeecCCccEEEEEeeeCCCCCcEE
Q 016224          306 ------IQTLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNL--EVTYTHNEEHGVLALCGMPDSEGKPVL  373 (393)
Q Consensus       306 ------~~~~~~~~~~v~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~l  373 (393)
                            +.++.-....+.-+.|.    .++|+.|...|.|.+||++..+..  ..+........|...+|+.++.   +|
T Consensus       292 es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs---~l  368 (385)
T KOG1034|consen  292 ESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS---IL  368 (385)
T ss_pred             ccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc---EE
Confidence                  23344444455555554    678999999999999999876552  2233334445688888877665   99


Q ss_pred             EEEeCCCeEEEEeCC
Q 016224          374 LCSCNDNSVRFYDLP  388 (393)
Q Consensus       374 ~s~s~dg~I~iwd~~  388 (393)
                      +..++|++|.-||..
T Consensus       369 v~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  369 VLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEEeCCCcEEEEEee
Confidence            999999999999864

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.83  E-value=9.1e-19  Score=169.95  Aligned_cols=241  Identities=17%  Similarity=0.230  Sum_probs=188.4

Q ss_pred             CCcccccceeecceEEeeEecCc--EEEecCCCeEEEEECCC-----------------CcEEEEEecCCcCCEEEEEec
Q 016224           99 NSNINNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGD-----------------GFKLLTQLEGHQKVVSGITLP  159 (393)
Q Consensus        99 ~~~~~~~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~-----------------~~~~~~~l~~h~~~I~~i~~s  159 (393)
                      +.+.-....|...|.|+.|++++  +++|+.|+.|.||....                 .++.+..+.+|...|..++|+
T Consensus        59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS  138 (942)
T ss_pred             chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence            34444456788999999999884  55799999999998762                 135788999999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc-e--EEEEeCCCEEEEE-cCCeEEEEECCCCcee-eec------CC
Q 016224          160 SGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-V--GCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLS------GP  228 (393)
Q Consensus       160 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-~--~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~------~~  228 (393)
                      |++.+|++++.|++|.|||..+.+.+..+..+.. +  ..+.+-|+++++- .|++|++|++..-... .+.      ..
T Consensus       139 p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~  218 (942)
T KOG0973|consen  139 PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPL  218 (942)
T ss_pred             CCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCC
Confidence            9999999999999999999999999888876643 3  3455789999984 7889999997663322 222      23


Q ss_pred             CCcEEEEEEeCC--EEEEEeC----CCcEEEEEeccCCccccCceeecCceeeEEEEEEcC-------C-----------
Q 016224          229 VGQVYAMAVGND--LLFAGTQ----DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA-------N-----------  284 (393)
Q Consensus       229 ~~~v~~l~~~~~--~l~~~~~----dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-------~-----------  284 (393)
                      ......+.|+||  +|++...    -..+.|.+-.+    ++....+.+|..++.++.|++       +           
T Consensus       219 ~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t----Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y  294 (942)
T KOG0973|consen  219 TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT----WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYY  294 (942)
T ss_pred             cceeeecccCCCcCeecchhhccCCcceeEEEecCC----ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcce
Confidence            346788999999  6766432    23466665432    466678899999999999852       1           


Q ss_pred             -EEEEecCCCcEEEeeCCCcceeeEec-cCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCC
Q 016224          285 -KLYSGSMDNSIRVWNLETLQCIQTLT-EHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDS  343 (393)
Q Consensus       285 -~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~  343 (393)
                       .+|+|+.|++|.||.....+++.... -....|..++|+  |-.|+++|.||+|.++...+.
T Consensus       295 ~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  295 CIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             EEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence             57899999999999998777765543 346689999999  678999999999999988643

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.83  E-value=1.2e-19  Score=162.26  Aligned_cols=231  Identities=21%  Similarity=0.385  Sum_probs=183.1

Q ss_pred             CCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC---eEEEEEecC---Cce--EEEEeCCCEEEEE-cCCeEEEEECC
Q 016224          148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG---QCAGVINLG---GEV--GCMISEGPWIFIG-VTNFVKAWNTQ  218 (393)
Q Consensus       148 ~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~---~~~~~~~~~---~~~--~~~~~~~~~l~~~-~~~~i~v~d~~  218 (393)
                      .|..-|.++..+...++++||+. |.|+|||+...   ..+..+..-   .-+  .-+.++++.|++| .-.++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            48889999999999999999986 68999999653   223333222   112  2234788888877 55599999998


Q ss_pred             CCcee---eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecC
Q 016224          219 TNTDL---SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSM  291 (393)
Q Consensus       219 ~~~~~---~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~  291 (393)
                      .....   .+....-..++++.++|  ..++++.||.|.|||+...    ..+..+.+|...+.||..+  |..|.+|+-
T Consensus       496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq----~~VrqfqGhtDGascIdis~dGtklWTGGl  571 (705)
T KOG0639|consen  496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISKDGTKLWTGGL  571 (705)
T ss_pred             CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc----eeeecccCCCCCceeEEecCCCceeecCCC
Confidence            87654   33344456778888998  8899999999999999987    6788999999999999886  779999999


Q ss_pred             CCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCC
Q 016224          292 DNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEG  369 (393)
Q Consensus       292 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  369 (393)
                      |.+||.||+++++.+.... ....|.++-+.  +++|+.|-..+.+.|......+   ....|.++.-|+++.|.+.+. 
T Consensus       572 DntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~---kyqlhlheScVLSlKFa~cGk-  646 (705)
T KOG0639|consen  572 DNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE---KYQLHLHESCVLSLKFAYCGK-  646 (705)
T ss_pred             ccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCcc---ceeecccccEEEEEEecccCc-
Confidence            9999999999988776554 45678888776  7899999999999998775443   334455666799999988776 


Q ss_pred             CcEEEEEeCCCeEEEEeCCce
Q 016224          370 KPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       370 ~~~l~s~s~dg~I~iwd~~s~  390 (393)
                        ++++.+.|+.+..|..+-|
T Consensus       647 --wfvStGkDnlLnawrtPyG  665 (705)
T KOG0639|consen  647 --WFVSTGKDNLLNAWRTPYG  665 (705)
T ss_pred             --eeeecCchhhhhhccCccc
Confidence              9999999999999998765

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=3.3e-20  Score=180.63  Aligned_cols=238  Identities=18%  Similarity=0.277  Sum_probs=187.8

Q ss_pred             cceEEeeEecC-----c-EEEecCCCeEEEEECCC-----CcEEEEEecCCcCCEEEEEecCCC-CEEEEEeCCCcEEEE
Q 016224          110 TDILCRNWVQG-----N-CMYGEKCKFLHSWTVGD-----GFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVW  177 (393)
Q Consensus       110 ~~i~c~~~~~~-----~-~~~g~~dg~i~vwd~~~-----~~~~~~~l~~h~~~I~~i~~s~~~-~~l~s~s~dg~v~iw  177 (393)
                      ..-.+++|...     + ++-|..||.|.+||...     ....+.+...|++.|..+.|++.+ +.||+|+.||.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            35677888522     2 45588999999999764     245677888999999999999965 599999999999999


Q ss_pred             ECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEE
Q 016224          178 DCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAW  254 (393)
Q Consensus       178 d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vw  254 (393)
                      |+.+-+.-...                                   ......+.|.+++|+..   .|++++.+|.+.||
T Consensus       145 Dlnn~~tP~~~-----------------------------------~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iW  189 (1049)
T KOG0307|consen  145 DLNKPETPFTP-----------------------------------GSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIW  189 (1049)
T ss_pred             ccCCcCCCCCC-----------------------------------CCCCCcccceEeccchhhhHHhhccCCCCCceec
Confidence            99874322111                                   01235678999999887   89999999999999


Q ss_pred             EeccCCccccCceeecCce--eeEEEEEEcCC---EEEEecCCC---cEEEeeCCC-cceeeEeccCccceEEEEEc---
Q 016224          255 KFNVTTNCFEPAASLKGHS--LAVVSLVVGAN---KLYSGSMDN---SIRVWNLET-LQCIQTLTEHTSVVMSLLCW---  322 (393)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~--~~v~~l~~~~~---~l~sg~~dg---~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~---  322 (393)
                      |++..    +++..+..+.  ..+..+.|+++   .|++++.|.   .|.+||+|. ..+++++++|...|.++.|.   
T Consensus       190 Dlr~~----~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D  265 (1049)
T KOG0307|consen  190 DLRKK----KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQD  265 (1049)
T ss_pred             cccCC----CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCC
Confidence            99987    3344444443  34678889865   577766553   799999985 56788889999999999998   


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          323 DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       323 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      ..+|++++.|++|.+|+..+++.+..+..  ....+..+.|.|..++  +|++++-||.|.||.+.+.
T Consensus       266 ~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv~w~pr~P~--~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  266 PRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDVQWCPRNPS--VMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             chhhhcccCCCCeeEecCCCceEeeecCC--CCcceeeeeecCCCcc--hhhhheeccceeeeeeecC
Confidence            46999999999999999999887777665  3456999999998765  7899999999999998765

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.82  E-value=7.8e-19  Score=152.77  Aligned_cols=209  Identities=19%  Similarity=0.278  Sum_probs=161.6

Q ss_pred             EecCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCcee
Q 016224          145 QLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL  223 (393)
Q Consensus       145 ~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~  223 (393)
                      .+.+|+++|..++|+| +.+.|||||.|.+|+||++..+.....+.                              ....
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt------------------------------epvv  125 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT------------------------------EPVV  125 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc------------------------------cceE
Confidence            4568999999999998 56789999999999999998765543332                              2233


Q ss_pred             eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEe
Q 016224          224 SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVW  298 (393)
Q Consensus       224 ~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iw  298 (393)
                      .+.+|...|--+.|+|.   .|++++.|.+|.+||+.++.    .+..+. |...|.+++|+  |.+|++.+.|..|+||
T Consensus       126 ~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge----ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~  200 (472)
T KOG0303|consen  126 ELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE----ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVI  200 (472)
T ss_pred             EEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc----eeeecC-CCCeEEEEEeccCCceeeeecccceeEEE
Confidence            67899999999999986   89999999999999999984    344455 99999999985  7899999999999999


Q ss_pred             eCCCcceeeEeccCccce-EEEEEc--CCEEEEEe---CCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcE
Q 016224          299 NLETLQCIQTLTEHTSVV-MSLLCW--DQFLLSCS---LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPV  372 (393)
Q Consensus       299 d~~~~~~~~~~~~~~~~v-~~l~~~--~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  372 (393)
                      |.++++.+..-.+|.+.- ..+.|-  +.++.||-   .+.++-+||..+.+....+.......+|+---|-++..  -+
T Consensus       201 dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~--iv  278 (472)
T KOG0303|consen  201 DPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTS--IV  278 (472)
T ss_pred             cCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCC--EE
Confidence            999999999988887653 222232  55444443   37889999998777666666555556676666655543  24


Q ss_pred             EEEEeCCCeEEEEeCCce
Q 016224          373 LLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       373 l~s~s~dg~I~iwd~~s~  390 (393)
                      .++|-.|+.||.|++..-
T Consensus       279 Yl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  279 YLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             EEEecCCcceEEEEecCC
Confidence            456667999999998653

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.82  E-value=1.1e-18  Score=160.32  Aligned_cols=238  Identities=19%  Similarity=0.318  Sum_probs=173.3

Q ss_pred             cccceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEE--ecCCcCCEEEEEecCC-CCEEEEEeCCCcEEEE
Q 016224          103 NNRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQ--LEGHQKVVSGITLPSG-SDKLYSGSKDETVRVW  177 (393)
Q Consensus       103 ~~~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~--l~~h~~~I~~i~~s~~-~~~l~s~s~dg~v~iw  177 (393)
                      ..-.-|.+.|..+.|.++  .+++++.|.++++||+++. +++..  +.+|...|.+++|.+. ...+++|+.||.|.||
T Consensus        94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s-~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW  172 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS-RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW  172 (720)
T ss_pred             cccccccceeEeeccCCCceeEEEccCCceeeeeeeccc-eeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence            445668889999999987  4667999999999999988 77766  8999999999999985 5678999999999999


Q ss_pred             ECCCCeEE---------------------------EEEec-C----CceEE-EEeCCCEEEE-E-cCCeEEEEECCCCce
Q 016224          178 DCASGQCA---------------------------GVINL-G----GEVGC-MISEGPWIFI-G-VTNFVKAWNTQTNTD  222 (393)
Q Consensus       178 d~~~~~~~---------------------------~~~~~-~----~~~~~-~~~~~~~l~~-~-~~~~i~v~d~~~~~~  222 (393)
                      |+.-...-                           ..... .    ..+.. ++.|...|++ | .|+.|+|||++....
T Consensus       173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~  252 (720)
T KOG0321|consen  173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT  252 (720)
T ss_pred             EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence            98633200                           00000 0    11122 2345666664 4 589999999988764


Q ss_pred             e---------eecCC---CCcEEEEEEeC--CEEEEEeCCCcEEEEEeccCCccccCceeecCceee---E-EEEEEcCC
Q 016224          223 L---------SLSGP---VGQVYAMAVGN--DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA---V-VSLVVGAN  284 (393)
Q Consensus       223 ~---------~~~~~---~~~v~~l~~~~--~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~---v-~~l~~~~~  284 (393)
                      .         .+..+   .-.+.++..+.  .+|++.+.|+.|++|++.....  .+...+.++...   + ..+.+++.
T Consensus       253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~--sP~~~~sg~~~~sf~vks~lSpd~~  330 (720)
T KOG0321|consen  253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSI--SPVAEFSGKLNSSFYVKSELSPDDC  330 (720)
T ss_pred             ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCc--CchhhccCcccceeeeeeecCCCCc
Confidence            3         11112   22355566554  4777777899999999987654  444555544322   2 34567788


Q ss_pred             EEEEecCCCcEEEeeCCCcc-eeeEeccCccceEEEEEcC---CEEEEEeCCCcEEEEEcCCC
Q 016224          285 KLYSGSMDNSIRVWNLETLQ-CIQTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVWFATDS  343 (393)
Q Consensus       285 ~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~~---~~l~s~s~dg~i~iwd~~~~  343 (393)
                      ++++|+.|...++|.+.+.+ ....+.+|.-.|++++|.+   .-+++++.|..++||++..+
T Consensus       331 ~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  331 SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            99999999999999998754 4566789999999999984   35788899999999998543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.82  E-value=5.3e-18  Score=144.15  Aligned_cols=260  Identities=20%  Similarity=0.283  Sum_probs=195.1

Q ss_pred             ceEEeeEecCc--EEEecCCCeEEEEECCCC-----------cEEEEEec-CCcCCEEEEEec-------CCCCEEEEEe
Q 016224          111 DILCRNWVQGN--CMYGEKCKFLHSWTVGDG-----------FKLLTQLE-GHQKVVSGITLP-------SGSDKLYSGS  169 (393)
Q Consensus       111 ~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~-----------~~~~~~l~-~h~~~I~~i~~s-------~~~~~l~s~s  169 (393)
                      ..-.+.|+|++  +++-+.|..+++|++...           ++...+++ .....|...+|-       |+..++++.+
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            34567899884  557889999999998621           11111111 134567777773       6788999999


Q ss_pred             CCCcEEEEECCCCeEEEEEecCC--------ceEEEEeCCCEEEEEcCCeEEEEEC-CCCcee---e-----ecCCCCcE
Q 016224          170 KDETVRVWDCASGQCAGVINLGG--------EVGCMISEGPWIFIGVTNFVKAWNT-QTNTDL---S-----LSGPVGQV  232 (393)
Q Consensus       170 ~dg~v~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~i~v~d~-~~~~~~---~-----~~~~~~~v  232 (393)
                      .|.-|++||.-+|+....+..-.        ...++.++|..|++|..+.|+++|+ +.++..   .     ..+..+-+
T Consensus       131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii  210 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII  210 (406)
T ss_pred             ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence            99999999999999887775422        2345568999999999999999999 555532   1     23346778


Q ss_pred             EEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecC-CCcEEEeeCCC-cce
Q 016224          233 YAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSM-DNSIRVWNLET-LQC  305 (393)
Q Consensus       233 ~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~-dg~i~iwd~~~-~~~  305 (393)
                      .+++|+|-   .+++++....+-||.-...    .++..+.+|.+.|+.+.|.  |+.|++|.. |-.|..||++. +.+
T Consensus       211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p  286 (406)
T KOG2919|consen  211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP  286 (406)
T ss_pred             eeeeccCCCCcceeeecccceeeeEecCCC----CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence            89999986   8999999999888876655    6778888999999999985  788888874 77999999986 566


Q ss_pred             eeEeccCcc-ceEEEEEc----CCEEEEEeCCCcEEEEEcCCCcc-eEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC
Q 016224          306 IQTLTEHTS-VVMSLLCW----DQFLLSCSLDKTIKVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND  379 (393)
Q Consensus       306 ~~~~~~~~~-~v~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d  379 (393)
                      +..+..|.. .-..|.|+    +++|++|+.||.|++||++.... +..+..+.  ..+..++++|.-+   ++++++..
T Consensus       287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s--d~vNgvslnP~mp---ilatssGq  361 (406)
T KOG2919|consen  287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS--DTVNGVSLNPIMP---ILATSSGQ  361 (406)
T ss_pred             hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc--ccccceecCcccc---eeeeccCc
Confidence            777877766 33455555    78999999999999999988554 44433333  3478888888776   77777643

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.81  E-value=2.2e-17  Score=153.09  Aligned_cols=282  Identities=21%  Similarity=0.286  Sum_probs=201.1

Q ss_pred             ceeecceEEeeEe---c-C-cEEEecCCCeEEEEECCCCc--------------------EEE----------EEecCCc
Q 016224          106 AVIKTDILCRNWV---Q-G-NCMYGEKCKFLHSWTVGDGF--------------------KLL----------TQLEGHQ  150 (393)
Q Consensus       106 ~~~~~~i~c~~~~---~-~-~~~~g~~dg~i~vwd~~~~~--------------------~~~----------~~l~~h~  150 (393)
                      ..|..-|..++|.   . + .+++++.|..|+||.+.-+-                    ..+          ..+.||.
T Consensus       188 ~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe  267 (764)
T KOG1063|consen  188 EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE  267 (764)
T ss_pred             eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc
Confidence            3466667777775   2 2 24469999999999864210                    111          2335999


Q ss_pred             CCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe--EEEEEecC---C----ceEEEE-eCCCEEEE-EcCCeEEEEECCC
Q 016224          151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ--CAGVINLG---G----EVGCMI-SEGPWIFI-GVTNFVKAWNTQT  219 (393)
Q Consensus       151 ~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~---~----~~~~~~-~~~~~l~~-~~~~~i~v~d~~~  219 (393)
                      +.|.++.|+|.+..|++++.|.++.+|...+..  =+.....+   +    -..++. +++..+++ |..|..++|..+.
T Consensus       268 DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d  347 (764)
T KOG1063|consen  268 DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD  347 (764)
T ss_pred             cceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccC
Confidence            999999999999999999999999999877652  22222222   1    123333 45555554 6888999999544


Q ss_pred             Cce----eeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCC---------------------------------
Q 016224          220 NTD----LSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT---------------------------------  260 (393)
Q Consensus       220 ~~~----~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~---------------------------------  260 (393)
                      ...    ..+.+|...|.+++|+|.  +|++.+.|.+-++|-.-..+                                 
T Consensus       348 ~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAd  427 (764)
T KOG1063|consen  348 KTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGAD  427 (764)
T ss_pred             ccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeeccc
Confidence            332    266789999999999876  88888888777765311000                                 


Q ss_pred             ---------------------------------------------ccc--------------------------------
Q 016224          261 ---------------------------------------------NCF--------------------------------  263 (393)
Q Consensus       261 ---------------------------------------------~~~--------------------------------  263 (393)
                                                                   ..+                                
T Consensus       428 EKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Ed  507 (764)
T KOG1063|consen  428 EKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTED  507 (764)
T ss_pred             ceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHH
Confidence                                                         000                                


Q ss_pred             --------cCceeecCceeeEEEEEEc--CCEEEEecCC-----CcEEEeeCCCcceeeEeccCccceEEEEEc--CCEE
Q 016224          264 --------EPAASLKGHSLAVVSLVVG--ANKLYSGSMD-----NSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFL  326 (393)
Q Consensus       264 --------~~~~~~~~~~~~v~~l~~~--~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l  326 (393)
                              ..++.+.+|...|.+++.+  ++++|+++..     ..|++|+..+...++.+.+|.-.|+.+.|+  +++|
T Consensus       508 qLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~L  587 (764)
T KOG1063|consen  508 QLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYL  587 (764)
T ss_pred             HHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEE
Confidence                    0013345788889999887  7789988753     469999999999999999999999999999  7899


Q ss_pred             EEEeCCCcEEEEEcCCCcceEEEE--eecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          327 LSCSLDKTIKVWFATDSGNLEVTY--THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       327 ~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      ++.+.|.++.+|...+......-+  ...+..-|.+..|+|+..   +|+|+|.|.+|++|..+..
T Consensus       588 LsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~---~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  588 LSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK---YFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             EEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc---eeEEecCCceEEEEeccCc
Confidence            999999999999875443322211  122233477888888776   8999999999999998765

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.81  E-value=3.4e-18  Score=152.80  Aligned_cols=259  Identities=14%  Similarity=0.132  Sum_probs=184.2

Q ss_pred             cEEEecCCCeEEEEECCCCcEEEEEecCCc--CCEEEEEecCCCC-EEEEEeCCCcEEEEECCCC--eEEEEEecCC-ce
Q 016224          121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ--KVVSGITLPSGSD-KLYSGSKDETVRVWDCASG--QCAGVINLGG-EV  194 (393)
Q Consensus       121 ~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~--~~I~~i~~s~~~~-~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~-~~  194 (393)
                      ++.+++...++++||+... .....+..|+  -.|.++.|+.... .+++.+.|..|++|.-...  +....-.... ..
T Consensus         4 Nl~~aS~gd~~kl~D~s~~-~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~   82 (673)
T KOG4378|consen    4 NLHVASTGDKTKLSDFSDL-ETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNA   82 (673)
T ss_pred             ceeeeccCCceEEeecccc-cCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchH
Confidence            4566777788999998754 3333443333  3488999976553 2334456889999975432  1211111111 11


Q ss_pred             EE--EEeCCCEEEE-EcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCcee
Q 016224          195 GC--MISEGPWIFI-GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAAS  268 (393)
Q Consensus       195 ~~--~~~~~~~l~~-~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~  268 (393)
                      .|  ..+...++++ |..+.|+|||++..... .+..|...|+++.++..  +|++++..|.|.|..+.++..    ...
T Consensus        83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~----tt~  158 (673)
T KOG4378|consen   83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK----TTT  158 (673)
T ss_pred             HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc----ccc
Confidence            22  2334455555 47789999999966655 78899999999999765  999999999999999988742    233


Q ss_pred             ecCc-eeeEEEEEEcC---CEEEEecCCCcEEEeeCCCcceeeEe-ccCccceEEEEEc---CCEEEEEeCCCcEEEEEc
Q 016224          269 LKGH-SLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTL-TEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFA  340 (393)
Q Consensus       269 ~~~~-~~~v~~l~~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~  340 (393)
                      +... ...|.-+.++.   .+|.+++.+|.|.+||+....++..+ +.|..+...|+|+   +.+|++.+.|.+|.+||+
T Consensus       159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~  238 (673)
T KOG4378|consen  159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDI  238 (673)
T ss_pred             eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeec
Confidence            3322 33444566653   36889999999999999988877665 5799999999998   458999999999999999


Q ss_pred             CCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          341 TDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       341 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      +.......+.   ...+..+++|++++.   +|+.|...|.|..||++..
T Consensus       239 ~s~~s~~~l~---y~~Plstvaf~~~G~---~L~aG~s~G~~i~YD~R~~  282 (673)
T KOG4378|consen  239 RSQASTDRLT---YSHPLSTVAFSECGT---YLCAGNSKGELIAYDMRST  282 (673)
T ss_pred             ccccccceee---ecCCcceeeecCCce---EEEeecCCceEEEEecccC
Confidence            8554433332   233477888877766   9999999999999999864

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=7.2e-19  Score=155.12  Aligned_cols=201  Identities=20%  Similarity=0.279  Sum_probs=155.2

Q ss_pred             cceeecceEEeeEec---CcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECC
Q 016224          105 RAVIKTDILCRNWVQ---GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCA  180 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~---~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~  180 (393)
                      ...|...|..+.|..   +-+++|+.|.+|.+||+.++ ++..++..|.+.|.+++|+| ...+|++|+.|++|.+.|++
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g-~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R  317 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG-KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR  317 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC-CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence            345777788888864   34668999999999999999 89999999999999999988 56899999999999999998


Q ss_pred             CCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEec
Q 016224          181 SGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFN  257 (393)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~  257 (393)
                      ......                                  .   .....+.|-.++|.+.   .+++++.||+|+-+|++
T Consensus       318 ~~~~s~----------------------------------~---~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R  360 (463)
T KOG0270|consen  318 DPSNSG----------------------------------K---EWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR  360 (463)
T ss_pred             CccccC----------------------------------c---eEEeccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence            522110                                  0   1122456677777664   89999999999999999


Q ss_pred             cCCccccCceeecCceeeEEEEEEc---CCEEEEecCCCcEEEeeCCCcce--eeEeccCccceEEEEEc---CCEEEEE
Q 016224          258 VTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQC--IQTLTEHTSVVMSLLCW---DQFLLSC  329 (393)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~---~~~l~s~  329 (393)
                      ...   +++.+++.|...|.+|+++   ++++++++.|+.|++|++..-..  +..-...-+...|.++.   ...++.|
T Consensus       361 ~~~---~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~G  437 (463)
T KOG0270|consen  361 NPG---KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFG  437 (463)
T ss_pred             CCC---CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEec
Confidence            876   7889999999999999997   56899999999999999875333  21111111223444444   3478889


Q ss_pred             eCCCcEEEEEcCCCcce
Q 016224          330 SLDKTIKVWFATDSGNL  346 (393)
Q Consensus       330 s~dg~i~iwd~~~~~~~  346 (393)
                      +..+.++|||+.+...+
T Consensus       438 G~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  438 GEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             CccceEEEeecccChhH
Confidence            99999999999776544

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.80  E-value=2.3e-18  Score=152.52  Aligned_cols=210  Identities=20%  Similarity=0.284  Sum_probs=161.2

Q ss_pred             EEEEEecCCcCCEEEEEecCCC--CEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECC
Q 016224          141 KLLTQLEGHQKVVSGITLPSGS--DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQ  218 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~--~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~  218 (393)
                      ......+-|...|++++|+|..  +++|+|+.-|+|-+||+.+.+..                                 
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d---------------------------------  223 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD---------------------------------  223 (498)
T ss_pred             eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc---------------------------------
Confidence            4455667789999999999965  58899999999999999633211                                 


Q ss_pred             CCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCC
Q 016224          219 TNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDN  293 (393)
Q Consensus       219 ~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg  293 (393)
                      ......+..|..+|.+|.|+|.   .+++.+.||+|++-|++....  +.+............+.+.  ...++.+..=|
T Consensus       224 ~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~--e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G  301 (498)
T KOG4328|consen  224 KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNIS--EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG  301 (498)
T ss_pred             cCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhh--HHHhhcCccceeeeeccccCCCccEEEeeccc
Confidence            1112245688999999999986   899999999999999987643  3344443344445555554  34566676667


Q ss_pred             cEEEeeCCCcce-eeEeccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcceE--EEEeecCCccEEEEEeeeCC
Q 016224          294 SIRVWNLETLQC-IQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLE--VTYTHNEEHGVLALCGMPDS  367 (393)
Q Consensus       294 ~i~iwd~~~~~~-~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~  367 (393)
                      ...+||+++... ...+.-|...|.++++.   +.+|+|++.|++++|||++......  .+....+...|.+..|+|.+
T Consensus       302 ~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~  381 (498)
T KOG4328|consen  302 NFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG  381 (498)
T ss_pred             ceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence            999999998654 66777899999999998   5689999999999999998655433  35555556679999999986


Q ss_pred             CCCcEEEEEeCCCeEEEEeCC
Q 016224          368 EGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       368 ~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      .   .|+|.+.|..|+|||..
T Consensus       382 g---tl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  382 G---TLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             C---ceEeeccCCceEEeecc
Confidence            5   49999999999999984

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.80  E-value=1.6e-16  Score=143.84  Aligned_cols=233  Identities=13%  Similarity=0.109  Sum_probs=162.5

Q ss_pred             eEEeeEecCc--E-EEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEE-eCCCcEEEEECCCCeEEEE
Q 016224          112 ILCRNWVQGN--C-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG-SKDETVRVWDCASGQCAGV  187 (393)
Q Consensus       112 i~c~~~~~~~--~-~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~-s~dg~v~iwd~~~~~~~~~  187 (393)
                      +.++.|++++  + ++++.++.|++||..++ +.+..+..+.. +..++|+|+++.++++ +.|+.|++||+.+.+.+..
T Consensus        33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~  110 (300)
T TIGR03866        33 PRGITLSKDGKLLYVCASDSDTIQVIDLATG-EVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE  110 (300)
T ss_pred             CCceEECCCCCEEEEEECCCCeEEEEECCCC-cEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence            4567888764  3 34678899999999988 66777765544 5678999999977655 5689999999999888877


Q ss_pred             EecCCce--EEEEeCCCEEEEEcC--CeEEEEECCCCceeeecCCCCcEEEEEEeCC--EE-EEEeCCCcEEEEEeccCC
Q 016224          188 INLGGEV--GCMISEGPWIFIGVT--NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGTQDGAILAWKFNVTT  260 (393)
Q Consensus       188 ~~~~~~~--~~~~~~~~~l~~~~~--~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~~~~dg~I~vwd~~~~~  260 (393)
                      +......  ..+.+++.+++++..  ..+.+||..+++..........+..+.|+++  .| +++..++.|++||+.+..
T Consensus       111 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~  190 (300)
T TIGR03866       111 IPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK  190 (300)
T ss_pred             eeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce
Confidence            7644332  344578888887643  3677889988776533233345677888887  55 445569999999998763


Q ss_pred             ccccCceeecC-----c--eeeEEEEEE--cCCEE-EEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEE
Q 016224          261 NCFEPAASLKG-----H--SLAVVSLVV--GANKL-YSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLS  328 (393)
Q Consensus       261 ~~~~~~~~~~~-----~--~~~v~~l~~--~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s  328 (393)
                      .    ...+..     +  ......+.+  +++++ ++.+.++.|.+||+++++.+..+. +...+.++.|+  +++|++
T Consensus       191 ~----~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~  265 (300)
T TIGR03866       191 V----IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLT  265 (300)
T ss_pred             e----eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEE
Confidence            2    222111     1  111223444  45664 444567789999999988876654 34468888887  668877


Q ss_pred             E-eCCCcEEEEEcCCCcceEEEEe
Q 016224          329 C-SLDKTIKVWFATDSGNLEVTYT  351 (393)
Q Consensus       329 ~-s~dg~i~iwd~~~~~~~~~~~~  351 (393)
                      + +.++.|++||+.+.+.+..+..
T Consensus       266 ~~~~~~~i~v~d~~~~~~~~~~~~  289 (300)
T TIGR03866       266 TNGVSNDVSVIDVAALKVIKSIKV  289 (300)
T ss_pred             EcCCCCeEEEEECCCCcEEEEEEc
Confidence            6 5689999999998877776654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.80  E-value=1.4e-17  Score=152.87  Aligned_cols=158  Identities=18%  Similarity=0.225  Sum_probs=123.0

Q ss_pred             CcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCcc---ccCceeecCceeeEEEEEEcC---CEEEEecCCCcEEEeeC
Q 016224          230 GQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC---FEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNL  300 (393)
Q Consensus       230 ~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~---~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~iwd~  300 (393)
                      ..|+.+.|+|-   .|++++.||.|++|.+..+...   ..+...+..|...|+++.|.+   +.|++++.|-+|++||+
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl  707 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL  707 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence            35667777763   8999999999999999875432   356677889999999999984   68999999999999999


Q ss_pred             CCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeC
Q 016224          301 ETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN  378 (393)
Q Consensus       301 ~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~  378 (393)
                      ++++....+.+|.+.|..++|+  |+.+++.+.||+|++|..++.+.............-..+.|..++.   ++++.+-
T Consensus       708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr---~viv~Gf  784 (1012)
T KOG1445|consen  708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGR---IVIVVGF  784 (1012)
T ss_pred             hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCc---EEEEecc
Confidence            9999999999999999999999  7899999999999999998766543322222223344566666544   6766655


Q ss_pred             C----CeEEEEeCCce
Q 016224          379 D----NSVRFYDLPSV  390 (393)
Q Consensus       379 d----g~I~iwd~~s~  390 (393)
                      |    ..|.+||.++.
T Consensus       785 dk~SeRQv~~Y~Aq~l  800 (1012)
T KOG1445|consen  785 DKSSERQVQMYDAQTL  800 (1012)
T ss_pred             cccchhhhhhhhhhhc
Confidence            4    45777776543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=7.7e-17  Score=136.89  Aligned_cols=274  Identities=14%  Similarity=0.160  Sum_probs=180.7

Q ss_pred             cceeecceEEeeEecC--cEEEecCCCeEEEEECCCCc----EEEEEecCCcCCEEEEEecCCCCEE-EEEeCCCcEEEE
Q 016224          105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGF----KLLTQLEGHQKVVSGITLPSGSDKL-YSGSKDETVRVW  177 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~----~~~~~l~~h~~~I~~i~~s~~~~~l-~s~s~dg~v~iw  177 (393)
                      .-.|...|+|++|+.+  .+++.+.|+.|++|++.+=.    +.++. .-.-+.-+.++|.||-+-+ ++.-...++++|
T Consensus        82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy  160 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY  160 (420)
T ss_pred             hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence            4468889999999877  46689999999999987520    11111 1112355778999987654 445556689999


Q ss_pred             ECCCCe---EEEEEe------c----CCceE--EEEeCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC-
Q 016224          178 DCASGQ---CAGVIN------L----GGEVG--CMISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-  240 (393)
Q Consensus       178 d~~~~~---~~~~~~------~----~~~~~--~~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~-  240 (393)
                      .+...+   ....+.      .    ...+.  .+...+.+|.+. .|..|.+|+++......+......-+..+.+|+ 
T Consensus       161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~G  240 (420)
T KOG2096|consen  161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDG  240 (420)
T ss_pred             EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCC
Confidence            875322   111110      0    01111  123456677654 778999999994444466666666777888888 


Q ss_pred             -EEEEEeCCCcEEEEEeccCCc----cccCceeecCceeeEEEEEEcC--CEEEEecCCCcEEEeeCCC-------ccee
Q 016224          241 -LLFAGTQDGAILAWKFNVTTN----CFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLET-------LQCI  306 (393)
Q Consensus       241 -~l~~~~~dg~I~vwd~~~~~~----~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~iwd~~~-------~~~~  306 (393)
                       ++++++..--|++|.+--...    .......+++|...|.+++|++  .++++.+.||+++|||+.-       .+.+
T Consensus       241 RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~L  320 (420)
T KOG2096|consen  241 RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKIL  320 (420)
T ss_pred             cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHh
Confidence             888999999999998743321    1244567899999999999975  4899999999999999852       1222


Q ss_pred             eEec-----cCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC
Q 016224          307 QTLT-----EHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND  379 (393)
Q Consensus       307 ~~~~-----~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d  379 (393)
                      ++..     ....++ .+..+  ++.|+. +....|++|..++++....+.. .+...+.+++|.+++.   +++|++ |
T Consensus       321 k~g~~pl~aag~~p~-RL~lsP~g~~lA~-s~gs~l~~~~se~g~~~~~~e~-~h~~~Is~is~~~~g~---~~atcG-d  393 (420)
T KOG2096|consen  321 KEGSAPLHAAGSEPV-RLELSPSGDSLAV-SFGSDLKVFASEDGKDYPELED-IHSTTISSISYSSDGK---YIATCG-D  393 (420)
T ss_pred             hcCCcchhhcCCCce-EEEeCCCCcEEEe-ecCCceEEEEcccCccchhHHH-hhcCceeeEEecCCCc---EEeeec-c
Confidence            2221     111222 44444  555554 4566899999988766554443 3334588999988766   788776 6


Q ss_pred             CeEEEEe
Q 016224          380 NSVRFYD  386 (393)
Q Consensus       380 g~I~iwd  386 (393)
                      ..++++.
T Consensus       394 r~vrv~~  400 (420)
T KOG2096|consen  394 RYVRVIR  400 (420)
T ss_pred             eeeeeec
Confidence            6788765

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.79  E-value=6.1e-18  Score=139.99  Aligned_cols=274  Identities=16%  Similarity=0.242  Sum_probs=189.4

Q ss_pred             eeecceEEeeEecC-cEEEecCCCeEEEEECCCCcEEEEEec-CCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 016224          107 VIKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC  184 (393)
Q Consensus       107 ~~~~~i~c~~~~~~-~~~~g~~dg~i~vwd~~~~~~~~~~l~-~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~  184 (393)
                      .|...++|+.|..+ .++.|..-|.|++|++.+. +.+..++ .|...|+.+.--|+ ..|.+-+.|+.+.+|++..+..
T Consensus        12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~-r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~   89 (323)
T KOG0322|consen   12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTE-RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAF   89 (323)
T ss_pred             cccchheehhhccchhhhcccccceEEEEEeecC-ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcce
Confidence            34557888877644 6778999999999999988 6666677 67889999998887 5788999999999999987654


Q ss_pred             EEEEecCCceE-----EEEeC---C-CEEEEEcCC--eEEEEECCCCcee-----eecCCCCcEEEEEEeCC-----EEE
Q 016224          185 AGVINLGGEVG-----CMISE---G-PWIFIGVTN--FVKAWNTQTNTDL-----SLSGPVGQVYAMAVGND-----LLF  243 (393)
Q Consensus       185 ~~~~~~~~~~~-----~~~~~---~-~~l~~~~~~--~i~v~d~~~~~~~-----~~~~~~~~v~~l~~~~~-----~l~  243 (393)
                      +..-.......     ++...   . ..++.-..+  .+++-|......+     ......+.+.+..+.-+     +|+
T Consensus        90 i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll  169 (323)
T KOG0322|consen   90 ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLL  169 (323)
T ss_pred             EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEE
Confidence            43322111100     01111   1 122221111  1233333222222     11234456777764322     788


Q ss_pred             EEeCCCcEEEEEeccCCccc------cCceeecCceeeEEEEEEcC--CEEEEecCCCcEEEeeCCC--cce--eeEecc
Q 016224          244 AGTQDGAILAWKFNVTTNCF------EPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLET--LQC--IQTLTE  311 (393)
Q Consensus       244 ~~~~dg~I~vwd~~~~~~~~------~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~iwd~~~--~~~--~~~~~~  311 (393)
                      +|.++|.+.+||+..+....      +.......|..+|.++.++.  +.=++|+.+..+..|++..  +.+  -.++..
T Consensus       170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l  249 (323)
T KOG0322|consen  170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL  249 (323)
T ss_pred             EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe
Confidence            99999999999999864321      23344567899999999874  3457788888899998863  222  122222


Q ss_pred             Cccce--EEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          312 HTSVV--MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       312 ~~~~v--~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      ....|  ..|..+++.+++++.|+.||||..++...+..+..|..  .+.+++|+|+.+   +++.++.|++|.+|++
T Consensus       250 knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa--gvn~vAfspd~~---lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  250 KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA--GVNAVAFSPDCE---LMAAASKDARISLWKL  322 (323)
T ss_pred             cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc--ceeEEEeCCCCc---hhhhccCCceEEeeec
Confidence            22233  45566689999999999999999999999999988885  499999999877   9999999999999987

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.78  E-value=2.3e-16  Score=136.57  Aligned_cols=233  Identities=16%  Similarity=0.190  Sum_probs=182.7

Q ss_pred             CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE-EEEEecCCceEEEEeCCCEEE-EEcC--CeEEEEECCCCceee
Q 016224          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC-AGVINLGGEVGCMISEGPWIF-IGVT--NFVKAWNTQTNTDLS  224 (393)
Q Consensus       149 h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~l~-~~~~--~~i~v~d~~~~~~~~  224 (393)
                      ....|..+.|..+...|..|+.||. ++++.+.... .........+.-+.....+++ ++.+  +.+++++++.+..+-
T Consensus         4 ~~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~IC   82 (391)
T KOG2110|consen    4 KKPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTIC   82 (391)
T ss_pred             CCcceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEE
Confidence            3456777789999999999999984 7888765433 222222233344444444444 5533  369999999888886


Q ss_pred             ecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceee---cCceeeEEEEEEcCC--EEEEec--CCCcEEE
Q 016224          225 LSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASL---KGHSLAVVSLVVGAN--KLYSGS--MDNSIRV  297 (393)
Q Consensus       225 ~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~---~~~~~~v~~l~~~~~--~l~sg~--~dg~i~i  297 (393)
                      -......|.++.++.+.|++.-++. |+|||++..    ++++++   ..+...+.+++++..  +++--+  ..|.|.|
T Consensus        83 e~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~M----klLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l  157 (391)
T KOG2110|consen   83 EIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDM----KLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL  157 (391)
T ss_pred             EEecCCceEEEEEccceEEEEEccc-EEEEecccc----eeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence            6666789999999999887776665 999999987    444444   345667888888743  776533  4689999


Q ss_pred             eeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCc-EEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEE
Q 016224          298 WNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKT-IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLL  374 (393)
Q Consensus       298 wd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  374 (393)
                      ||+.+.+.+.++..|.+.+.+++|+  |.+|||+|..|+ |||+.+.+++++..+........+.+++|+++++   +|+
T Consensus       158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~---~L~  234 (391)
T KOG2110|consen  158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ---FLA  234 (391)
T ss_pred             EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC---eEE
Confidence            9999999999999999999999998  889999999997 8999999999999998877788899999999887   999


Q ss_pred             EEeCCCeEEEEeCCce
Q 016224          375 CSCNDNSVRFYDLPSV  390 (393)
Q Consensus       375 s~s~dg~I~iwd~~s~  390 (393)
                      +.++.++|++|.++.-
T Consensus       235 ~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  235 ASSNTETVHIFKLEKV  250 (391)
T ss_pred             EecCCCeEEEEEeccc
Confidence            9999999999998753

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=5.1e-17  Score=137.34  Aligned_cols=209  Identities=13%  Similarity=0.258  Sum_probs=153.1

Q ss_pred             cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeec
Q 016224          147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS  226 (393)
Q Consensus       147 ~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~  226 (393)
                      .+|.+-|+++.|.+.|+++|||+.|++|+|||..+..-.....                                 -...
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T---------------------------------s~Wr   56 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT---------------------------------SSWR   56 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe---------------------------------eeEE
Confidence            4799999999999999999999999999999975543221110                                 1345


Q ss_pred             CCCCcEEEEEEe-CC---EEEEEeCCCcEEEEEeccCC-----ccccCceeecCceeeEEEEEEcCC----EEEEecCCC
Q 016224          227 GPVGQVYAMAVG-ND---LLFAGTQDGAILAWKFNVTT-----NCFEPAASLKGHSLAVVSLVVGAN----KLYSGSMDN  293 (393)
Q Consensus       227 ~~~~~v~~l~~~-~~---~l~~~~~dg~I~vwd~~~~~-----~~~~~~~~~~~~~~~v~~l~~~~~----~l~sg~~dg  293 (393)
                      .|.+.|..+.|. |.   .+++++.|+++.||.-....     ..+.....+......|+.+.|.+.    .|++++.||
T Consensus        57 ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG  136 (361)
T KOG2445|consen   57 AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADG  136 (361)
T ss_pred             ecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCc
Confidence            788899999985 43   89999999999999763221     123445566777889999999754    699999999


Q ss_pred             cEEEeeCCC------cceeeEec-------cCccceEEEEEc-----CCEEEEEeCC-----CcEEEEEcCCCc-ceEEE
Q 016224          294 SIRVWNLET------LQCIQTLT-------EHTSVVMSLLCW-----DQFLLSCSLD-----KTIKVWFATDSG-NLEVT  349 (393)
Q Consensus       294 ~i~iwd~~~------~~~~~~~~-------~~~~~v~~l~~~-----~~~l~s~s~d-----g~i~iwd~~~~~-~~~~~  349 (393)
                      .||||+.-.      ..+..+++       .+..+..|+.|+     ..+|+.|+.+     +.++||...+.. +....
T Consensus       137 ~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv  216 (361)
T KOG2445|consen  137 ILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV  216 (361)
T ss_pred             EEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeee
Confidence            999997643      33334443       456677888887     3577877766     589999876554 22222


Q ss_pred             Ee-ecCCccEEEEEeeeCC-CCCcEEEEEeCCCeEEEEeCCc
Q 016224          350 YT-HNEEHGVLALCGMPDS-EGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       350 ~~-~~~~~~v~~~~~~~~~-~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      .. .....+|.+++|.|.. ..-.+|++++.|| |+||++..
T Consensus       217 a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~  257 (361)
T KOG2445|consen  217 AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV  257 (361)
T ss_pred             hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence            11 2344569999999964 2334899999999 99999874

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.78  E-value=7.3e-17  Score=149.69  Aligned_cols=266  Identities=20%  Similarity=0.269  Sum_probs=191.3

Q ss_pred             eEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCC---EEEEEeCCCcEEEEECCCCeE--EEEEec
Q 016224          116 NWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD---KLYSGSKDETVRVWDCASGQC--AGVINL  190 (393)
Q Consensus       116 ~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~---~l~s~s~dg~v~iwd~~~~~~--~~~~~~  190 (393)
                      .|.+...++-+....|.+||..+. .....+.+|..+|+|+.|-|+++   ++++|+.|+.|.+|.++....  +..+++
T Consensus        21 sw~~~~~vafGa~~~Iav~dp~k~-~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g   99 (764)
T KOG1063|consen   21 SWGPGGLVAFGAGPAIAVADPEKI-LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG   99 (764)
T ss_pred             cccccceEEecCCceEEEeCcccc-eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecC
Confidence            456777777777889999998876 78889999999999999998877   899999999999999985543  444444


Q ss_pred             C-CceEEEEeCCCEEEE-EcCCeEEEEECCCCcee-----eecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEEeccC
Q 016224          191 G-GEVGCMISEGPWIFI-GVTNFVKAWNTQTNTDL-----SLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVT  259 (393)
Q Consensus       191 ~-~~~~~~~~~~~~l~~-~~~~~i~v~d~~~~~~~-----~~~~~~~~v~~l~~~~~----~l~~~~~dg~I~vwd~~~~  259 (393)
                      . ..+.++.......++ +.++.+.+|+.+..+..     .+....--..|+++.++    +++.|+.+..|.++.-.. 
T Consensus       100 ~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~-  178 (764)
T KOG1063|consen  100 HCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSA-  178 (764)
T ss_pred             cceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCC-
Confidence            2 233344333333343 58999999999666522     11111122234444443    777888888888886653 


Q ss_pred             CccccCceeecCceeeEEEEEEc---C-C-EEEEecCCCcEEEeeCCCcc---------------------eeeE-----
Q 016224          260 TNCFEPAASLKGHSLAVVSLVVG---A-N-KLYSGSMDNSIRVWNLETLQ---------------------CIQT-----  308 (393)
Q Consensus       260 ~~~~~~~~~~~~~~~~v~~l~~~---~-~-~l~sg~~dg~i~iwd~~~~~---------------------~~~~-----  308 (393)
                       ..+.....+.+|...|.+++|.   + + +|++++.|..||||.+.-+.                     ...+     
T Consensus       179 -d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~i  257 (764)
T KOG1063|consen  179 -DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRI  257 (764)
T ss_pred             -cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEE
Confidence             3467788999999999999985   2 2 69999999999999764221                     1111     


Q ss_pred             -----eccCccceEEEEEcC--CEEEEEeCCCcEEEEEcCCCcceEEE--E-e--ecCCccEEEEEeeeCCCCCcEEEEE
Q 016224          309 -----LTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDSGNLEVT--Y-T--HNEEHGVLALCGMPDSEGKPVLLCS  376 (393)
Q Consensus       309 -----~~~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~--~-~--~~~~~~v~~~~~~~~~~~~~~l~s~  376 (393)
                           +.+|...|.++.|++  ..|+++|.|.++.+|...+..-+-.-  . +  .....+-....|+|++.   .+++-
T Consensus       258 s~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~---~ii~~  334 (764)
T KOG1063|consen  258 SFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN---VIIAH  334 (764)
T ss_pred             ehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC---EEEEe
Confidence                 248999999999994  47999999999999987655322211  1 1  11123467778888765   89999


Q ss_pred             eCCCeEEEEeC
Q 016224          377 CNDNSVRFYDL  387 (393)
Q Consensus       377 s~dg~I~iwd~  387 (393)
                      +.-|..++|..
T Consensus       335 g~~Gg~hlWkt  345 (764)
T KOG1063|consen  335 GRTGGFHLWKT  345 (764)
T ss_pred             cccCcEEEEec
Confidence            99999999983

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.78  E-value=1.4e-16  Score=151.22  Aligned_cols=256  Identities=13%  Similarity=0.185  Sum_probs=181.5

Q ss_pred             CeEEEEECCCCcEEEEEecCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECCCCeE--EEEE-----ecCCceEEEE--
Q 016224          129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQC--AGVI-----NLGGEVGCMI--  198 (393)
Q Consensus       129 g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~~~~~--~~~~-----~~~~~~~~~~--  198 (393)
                      +.+.||++.+...+...+. -...|+++.|+| +..+|+.|..+|.|.+||+..+..  ...+     .+..++..+.  
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            4799999987655555555 568999999998 567888889999999999987755  2222     2233333322  


Q ss_pred             ---eCCCEEEEEcCCeEEEEECCCCcee-------eec------CCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccC
Q 016224          199 ---SEGPWIFIGVTNFVKAWNTQTNTDL-------SLS------GPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVT  259 (393)
Q Consensus       199 ---~~~~~l~~~~~~~i~v~d~~~~~~~-------~~~------~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~  259 (393)
                         .+..++.++.||.|..|+++.-...       ...      .....+++++|.+.   .|++|+++|.|..-+-...
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence               1345777889999999988764431       111      23346788888654   9999999999987443333


Q ss_pred             Ccc----ccCceeecCceeeEEEEEEcC---CEEEEecCCCcEEEeeCC-CcceeeEeccCccceEEEEEc---CCEEEE
Q 016224          260 TNC----FEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLE-TLQCIQTLTEHTSVVMSLLCW---DQFLLS  328 (393)
Q Consensus       260 ~~~----~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~~---~~~l~s  328 (393)
                      ...    ++....+..|.+.|.++.+++   ..|++++ |.+|+||... ...++..+..+...+++++|+   +..+++
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~  459 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT  459 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence            222    244556677899999998873   4566665 9999999988 777888888888889999999   458999


Q ss_pred             EeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          329 CSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       329 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      +..||.|.|||+.....-..............+.|++.   +++|++|...|++++|++..
T Consensus       460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~---g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPN---GKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             EcCCCceehhhhhccccCCcccccccccccceeecCCC---CcEEEEecCCCcEEEEEcCc
Confidence            99999999999975443222221111222333444443   44999999999999999964

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=3.9e-17  Score=157.87  Aligned_cols=264  Identities=19%  Similarity=0.277  Sum_probs=185.8

Q ss_pred             cEEEecCCCeEEEEECCCCcEEEEEecCC---cCCEEEEEecC--CCCEEEEEeCCCcEEEEEC-CCC----eEEEEEec
Q 016224          121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGH---QKVVSGITLPS--GSDKLYSGSKDETVRVWDC-ASG----QCAGVINL  190 (393)
Q Consensus       121 ~~~~g~~dg~i~vwd~~~~~~~~~~l~~h---~~~I~~i~~s~--~~~~l~s~s~dg~v~iwd~-~~~----~~~~~~~~  190 (393)
                      .++++...-.|+|||.+.+ +.+..|..+   ...|+.+.+-.  |..+|++|+.||.|+||+- ..+    +.+.....
T Consensus      1078 ~i~~ad~r~~i~vwd~e~~-~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~ 1156 (1387)
T KOG1517|consen 1078 QIAAADDRERIRVWDWEKG-RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSS 1156 (1387)
T ss_pred             eeEEcCCcceEEEEecccC-ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeecc
Confidence            3445555678999999988 677666544   47899999843  5678999999999999973 222    23322211


Q ss_pred             -------CCceEEE---Ee-CCCEEEEEcCCeEEEEECCCCcee--eecCCCCcEEEEEEeC---CEEEEEeCCCcEEEE
Q 016224          191 -------GGEVGCM---IS-EGPWIFIGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGN---DLLFAGTQDGAILAW  254 (393)
Q Consensus       191 -------~~~~~~~---~~-~~~~l~~~~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~---~~l~~~~~dg~I~vw  254 (393)
                             ......+   .. .|.++++|.-..|+|||.......  ...+....|+++.-+-   +.+++|..||.|++|
T Consensus      1157 Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvy 1236 (1387)
T KOG1517|consen 1157 LSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVY 1236 (1387)
T ss_pred             ccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEe
Confidence                   1111122   22 566666677789999999988766  3444556677776543   499999999999999


Q ss_pred             EeccCCccccCceeecCceee--EEEEEEcC--C-EEEEecCCCcEEEeeCCCcceeeEe--ccCc--c-ceEEEEEc--
Q 016224          255 KFNVTTNCFEPAASLKGHSLA--VVSLVVGA--N-KLYSGSMDNSIRVWNLETLQCIQTL--TEHT--S-VVMSLLCW--  322 (393)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~~~--v~~l~~~~--~-~l~sg~~dg~i~iwd~~~~~~~~~~--~~~~--~-~v~~l~~~--  322 (393)
                      |.+..... .++...+.|...  |..+.+..  - .|++|+.||.|++||++.......+  ..|.  + ..+++..+  
T Consensus      1237 D~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~h 1315 (1387)
T KOG1517|consen 1237 DRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEH 1315 (1387)
T ss_pred             ecccCCcc-ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccC
Confidence            99876542 456667778777  88888863  2 5999999999999999974332222  2232  3 47888877  


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcceEEEEee-----cCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          323 DQFLLSCSLDKTIKVWFATDSGNLEVTYTH-----NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       323 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      ...+|+|+. +.|+||++. ++++..+...     .....+.+++|+|...   ++++|+.|..|.||..+...
T Consensus      1316 apiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~---llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1316 APIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRL---LLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             CCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhH---hhhhccCCceEEEeecCCcC
Confidence            468888888 999999985 4444433322     1224578899988766   89999999999999876543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.77  E-value=4.5e-17  Score=150.44  Aligned_cols=267  Identities=16%  Similarity=0.205  Sum_probs=197.2

Q ss_pred             ceEEeeEecCc-EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 016224          111 DILCRNWVQGN-CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN  189 (393)
Q Consensus       111 ~i~c~~~~~~~-~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  189 (393)
                      .|..++|.|++ .+.-..+..+.+||..+| .++.++++|++.|.+++|+.||+++|||+.|..|.+|+-. .+-+-.+.
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG-~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~LkYS   91 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDG-TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILKYS   91 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCc-ccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceeeec
Confidence            67778888874 344556678999999999 8999999999999999999999999999999999999954 34455667


Q ss_pred             cCCceEEEEe--CCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccC
Q 016224          190 LGGEVGCMIS--EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEP  265 (393)
Q Consensus       190 ~~~~~~~~~~--~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~  265 (393)
                      +...+.|+..  -...+++..-...-+|......... ......+.+++|..|  +|+.|-.+|+|.+-+-.....  ..
T Consensus        92 H~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek--~~  168 (1081)
T KOG1538|consen   92 HNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK--VK  168 (1081)
T ss_pred             cCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc--eE
Confidence            7778888763  4556666666667788876654432 233567889999888  999999999999885443211  22


Q ss_pred             ceeecCceeeEEEEEEcC-------CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEE
Q 016224          266 AASLKGHSLAVVSLVVGA-------NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIK  336 (393)
Q Consensus       266 ~~~~~~~~~~v~~l~~~~-------~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~  336 (393)
                      +....+...+|.+++|++       +.+++.....++.++.+. |+.+..-+.-.-.-.|+.+.  |.+++.|+.|+.++
T Consensus       169 I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~  247 (1081)
T KOG1538|consen  169 IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLS  247 (1081)
T ss_pred             EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceE
Confidence            333345778899999963       368888888888888875 45444322222223445444  88999999999999


Q ss_pred             EEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          337 VWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       337 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      +|.- ++-.+..+.  ..+..+..+...|+++   +++.|+.||+|.-|++..
T Consensus       248 ~fTR-~GvrLGTvg--~~D~WIWtV~~~PNsQ---~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  248 LFTR-DGVRLGTVG--EQDSWIWTVQAKPNSQ---YVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             EEee-cCeEEeecc--ccceeEEEEEEccCCc---eEEEEEccCeeehhhhHH
Confidence            9953 344443333  3556789999888777   899999999999998753

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.76  E-value=1e-16  Score=134.43  Aligned_cols=208  Identities=17%  Similarity=0.241  Sum_probs=164.4

Q ss_pred             eEEEEECCCCc--------EEEEEec-CCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE-EEEEecCCce-----
Q 016224          130 FLHSWTVGDGF--------KLLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC-AGVINLGGEV-----  194 (393)
Q Consensus       130 ~i~vwd~~~~~--------~~~~~l~-~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~-----  194 (393)
                      .+.||.+....        +++..|. .+-+.|.|+.|.|++..|++-. |..|.+|+++++.. +..+......     
T Consensus        94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~  172 (370)
T KOG1007|consen   94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHS  172 (370)
T ss_pred             eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccce
Confidence            46799987542        2333443 4567999999999999998876 88999999998765 4444333221     


Q ss_pred             ---EEEE--eCCCEEEEEcCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCcccc
Q 016224          195 ---GCMI--SEGPWIFIGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFE  264 (393)
Q Consensus       195 ---~~~~--~~~~~l~~~~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~  264 (393)
                         ..+.  .++..+++..++++..||+++....  ....|...|..+.|+|+   +|++++.||.|++||.+..+   .
T Consensus       173 ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---~  249 (370)
T KOG1007|consen  173 FTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---F  249 (370)
T ss_pred             ecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC---c
Confidence               1122  3788899999999999999987766  45678899999999998   89999999999999999875   7


Q ss_pred             CceeecCceeeEEEEEEcC---CEEEEecCCCcEEEeeCCCc-----------------------------ceeeEeccC
Q 016224          265 PAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETL-----------------------------QCIQTLTEH  312 (393)
Q Consensus       265 ~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~iwd~~~~-----------------------------~~~~~~~~~  312 (393)
                      ++..+.+|.-.|.++.+++   .++++|+.|..|.+|....-                             -.+.++..|
T Consensus       250 pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh  329 (370)
T KOG1007|consen  250 PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH  329 (370)
T ss_pred             cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc
Confidence            8889999999999999974   47999999999999964321                             124577889


Q ss_pred             ccceEEEEEc---CCEEEEEeCCCcEEEEEcC
Q 016224          313 TSVVMSLLCW---DQFLLSCSLDKTIKVWFAT  341 (393)
Q Consensus       313 ~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~  341 (393)
                      ...|.+++|+   +=.+++-+.||.+.|=.+.
T Consensus       330 EDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  330 EDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             ccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            9999999999   3378899999999886553

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=5.5e-17  Score=137.55  Aligned_cols=246  Identities=14%  Similarity=0.200  Sum_probs=170.2

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc-e--EEEEeCCCEEEEE-cCCeEEEEE
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-V--GCMISEGPWIFIG-VTNFVKAWN  216 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-~--~~~~~~~~~l~~~-~~~~i~v~d  216 (393)
                      ++..++. |.. -.|+.|++.|.+||+|..||.|.|||+.+...-+.+..+.. +  .++.++|+.|+++ .|..|.+||
T Consensus        16 el~~tld-~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwD   93 (405)
T KOG1273|consen   16 ELTHTLD-NPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWD   93 (405)
T ss_pred             hhceecc-CCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEe
Confidence            3444554 333 78899999999999999999999999999876666665533 2  4455788888765 888999999


Q ss_pred             CCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEE---EEEEcCCEEEEec
Q 016224          217 TQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVV---SLVVGANKLYSGS  290 (393)
Q Consensus       217 ~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~---~l~~~~~~l~sg~  290 (393)
                      +..+..+.......+|....|+|.   .+++.-.+..-.+.++.......-+.. -.+....+.   .+.-.|+++++|.
T Consensus        94 l~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d-~d~dln~sas~~~fdr~g~yIitGt  172 (405)
T KOG1273|consen   94 LLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKD-DDGDLNSSASHGVFDRRGKYIITGT  172 (405)
T ss_pred             ccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCC-CccccccccccccccCCCCEEEEec
Confidence            999998877778889999999986   444444444455555554321111100 011111111   1233488999999


Q ss_pred             CCCcEEEeeCCCcceeeEeccCc-cceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcce----EEEEeecC-----CccE
Q 016224          291 MDNSIRVWNLETLQCIQTLTEHT-SVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNL----EVTYTHNE-----EHGV  358 (393)
Q Consensus       291 ~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~~-----~~~v  358 (393)
                      ..|.+.++|..+.+++..++... ..|..+.++  +++|+.-+.|..||.|+++.--..    +....|+-     ...-
T Consensus       173 sKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W  252 (405)
T KOG1273|consen  173 SKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW  252 (405)
T ss_pred             CcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence            99999999999999999998766 677788777  889999999999999998632111    11111111     1123


Q ss_pred             EEEEeeeCCCCCcEEEEEeC-CCeEEEEeCCceee
Q 016224          359 LALCGMPDSEGKPVLLCSCN-DNSVRFYDLPSVII  392 (393)
Q Consensus       359 ~~~~~~~~~~~~~~l~s~s~-dg~I~iwd~~s~~l  392 (393)
                      ..++|+.++.   |++.++. -..++||+-..|.|
T Consensus       253 k~ccfs~dge---Yv~a~s~~aHaLYIWE~~~GsL  284 (405)
T KOG1273|consen  253 KKCCFSGDGE---YVCAGSARAHALYIWEKSIGSL  284 (405)
T ss_pred             hheeecCCcc---EEEeccccceeEEEEecCCcce
Confidence            3566766544   6666554 57799999988865

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.76  E-value=8.1e-17  Score=135.14  Aligned_cols=240  Identities=13%  Similarity=0.189  Sum_probs=176.1

Q ss_pred             eeecceEEeeEecCcE-----EEecCCCeEEEEECCCC---cEEEEEe-----cCCcCCEEEEEecC-CCCEEEEEeCCC
Q 016224          107 VIKTDILCRNWVQGNC-----MYGEKCKFLHSWTVGDG---FKLLTQL-----EGHQKVVSGITLPS-GSDKLYSGSKDE  172 (393)
Q Consensus       107 ~~~~~i~c~~~~~~~~-----~~g~~dg~i~vwd~~~~---~~~~~~l-----~~h~~~I~~i~~s~-~~~~l~s~s~dg  172 (393)
                      .|.-+++-+.|.++..     +.++.+..+++|.+...   .++...|     ..+..++++..|+. +-++|.++|-|-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT  173 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT  173 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence            5667899999998863     35888889999998742   1222222     34678999999976 678999999999


Q ss_pred             cEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCC
Q 016224          173 TVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDG  249 (393)
Q Consensus       173 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg  249 (393)
                      +..|||++++..-.                                  -..++..|..+|..++|...   .|++.+.||
T Consensus       174 TCTiWdie~~~~~~----------------------------------vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDG  219 (364)
T KOG0290|consen  174 TCTIWDIETGVSGT----------------------------------VKTQLIAHDKEVYDIAFLKGSRDVFASVGADG  219 (364)
T ss_pred             eEEEEEEeeccccc----------------------------------eeeEEEecCcceeEEEeccCccceEEEecCCC
Confidence            99999999872200                                  01156789999999999874   999999999


Q ss_pred             cEEEEEeccCCccccCceeecCceeeEEEEEEc---CCEEEEecCC-CcEEEeeCCC-cceeeEeccCccceEEEEEc--
Q 016224          250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMD-NSIRVWNLET-LQCIQTLTEHTSVVMSLLCW--  322 (393)
Q Consensus       250 ~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~d-g~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~--  322 (393)
                      +|++||++..... ..+.+-.....+...++|+   ++++|+-..| ..|.|.|++. ..++.+++.|.+.|+.++|.  
T Consensus       220 SvRmFDLR~leHS-TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPh  298 (364)
T KOG0290|consen  220 SVRMFDLRSLEHS-TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPH  298 (364)
T ss_pred             cEEEEEecccccc-eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCC
Confidence            9999999986432 2222222225567788886   5677776554 5799999986 56789999999999999998  


Q ss_pred             -CCEEEEEeCCCcEEEEEcCCCcc---eEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEE
Q 016224          323 -DQFLLSCSLDKTIKVWFATDSGN---LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRF  384 (393)
Q Consensus       323 -~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~i  384 (393)
                       ...|++++.|.++.|||+.+...   ...+........|..+.|++..++  .|+.+.. ..+.+
T Consensus       299 S~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~D--wiai~~~-kklei  361 (364)
T KOG0290|consen  299 SSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPD--WIAICFG-KKLEI  361 (364)
T ss_pred             CCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCC--EEEEEec-CeeeE
Confidence             56899999999999999975433   111222234456899999987665  5666643 44544

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.6e-15  Score=124.48  Aligned_cols=265  Identities=13%  Similarity=0.200  Sum_probs=183.9

Q ss_pred             eEEeeEecCc--EEEecCCCeEEEEECCC---------CcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 016224          112 ILCRNWVQGN--CMYGEKCKFLHSWTVGD---------GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA  180 (393)
Q Consensus       112 i~c~~~~~~~--~~~g~~dg~i~vwd~~~---------~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~  180 (393)
                      |..-+|++..  ++.|..+|.|.+..+.+         +...+...++|..+|..++|.  ..+|++|+ ||.|+-|..+
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~   89 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWN   89 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeeh
Confidence            3344555442  55799999999998752         334566679999999999998  44677766 5999999876


Q ss_pred             CCeE------EEEEecC--------CceEEEE---eCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEE-eCC-
Q 016224          181 SGQC------AGVINLG--------GEVGCMI---SEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAV-GND-  240 (393)
Q Consensus       181 ~~~~------~~~~~~~--------~~~~~~~---~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~-~~~-  240 (393)
                      +...      +.....+        .++..+.   ..+.+++++.|+.++-||+++++.. .+.+|.+.|.++.- +.+ 
T Consensus        90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~  169 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG  169 (325)
T ss_pred             hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence            4322      1111111        1222332   4688889999999999999999988 89999999999988 333 


Q ss_pred             EEEEEeCCCcEEEEEeccCCcc-----ccCceeecCc-eeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCcc
Q 016224          241 LLFAGTQDGAILAWKFNVTTNC-----FEPAASLKGH-SLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTS  314 (393)
Q Consensus       241 ~l~~~~~dg~I~vwd~~~~~~~-----~~~~~~~~~~-~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  314 (393)
                      .+++|++||++++||.++.+..     ++....+..| ...|.+++.+.+.|++|+ ...+.+|.++..++...|. -..
T Consensus       170 qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa  247 (325)
T KOG0649|consen  170 QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP-IPA  247 (325)
T ss_pred             ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEe-ccc
Confidence            9999999999999999987432     1111112223 345788999999998886 4679999999998888876 456


Q ss_pred             ceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          315 VVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       315 ~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                      .+..+.|..+.+++++....|.-|.+. + .+...... .....+...+....  -++|-.++....+.|+.
T Consensus       248 ~v~~v~F~~d~vl~~G~g~~v~~~~l~-G-vl~a~ip~-~s~~c~s~s~~~~p--~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  248 RVHLVDFVDDCVLIGGEGNHVQSYTLN-G-VLQANIPV-ESTACYSASWQTSP--IKFISIAGFSNKLHILK  314 (325)
T ss_pred             ceeEeeeecceEEEeccccceeeeeec-c-EEEEeccC-CccceeeecccCCc--eEEEEecccceeeeeee
Confidence            778889999999999999999999874 2 22222211 11223444333221  23566667777777653

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.75  E-value=5.1e-17  Score=149.33  Aligned_cols=111  Identities=23%  Similarity=0.378  Sum_probs=95.3

Q ss_pred             EEEEEEc---CCEEEEecCCCcEEEeeCCC-------cceeeEeccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCC
Q 016224          276 VVSLVVG---ANKLYSGSMDNSIRVWNLET-------LQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATD  342 (393)
Q Consensus       276 v~~l~~~---~~~l~sg~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~  342 (393)
                      |+.+.|+   ..+|++++.||.|++|.+..       .++...+..|...|+++.|+   .+.|++++.|.+|++||+.+
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~  709 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN  709 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence            4566665   45799999999999999864       34567788999999999999   57999999999999999999


Q ss_pred             CcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          343 SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       343 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      ......+.+|...  +..++|+|++.   .+++.+.||+|++|+.++.+
T Consensus       710 ~~~~~~l~gHtdq--If~~AWSpdGr---~~AtVcKDg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  710 AKLYSRLVGHTDQ--IFGIAWSPDGR---RIATVCKDGTLRVYEPRSRE  753 (1012)
T ss_pred             hhhhheeccCcCc--eeEEEECCCCc---ceeeeecCceEEEeCCCCCC
Confidence            8887888887765  99999999877   89999999999999987653

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=3e-16  Score=139.38  Aligned_cols=236  Identities=17%  Similarity=0.247  Sum_probs=171.0

Q ss_pred             cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC--eEEEEEecCC-c--eEEEEeCCC-EEEEE-cCCeEEEEECCCCce
Q 016224          150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASG--QCAGVINLGG-E--VGCMISEGP-WIFIG-VTNFVKAWNTQTNTD  222 (393)
Q Consensus       150 ~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~-~--~~~~~~~~~-~l~~~-~~~~i~v~d~~~~~~  222 (393)
                      .+.|++|.|+|....|++++.|++++||.++..  ..++.+.... +  ...+.++|. .++++ ....++.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            478999999999999999999999999998643  3444444432 2  244556777 55554 666999999999887


Q ss_pred             eeec---CCC-CcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCc
Q 016224          223 LSLS---GPV-GQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNS  294 (393)
Q Consensus       223 ~~~~---~~~-~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~  294 (393)
                      ..+.   ++. ..+....++++  +|+..+..|.|.+....++    +.+..++ -.+.|..+.|+  +..|++.+.+|.
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~----eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~Ge  367 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK----ELITSFK-IEGVVSDFTFSSDSKELLASGGTGE  367 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh----hhhheee-eccEEeeEEEecCCcEEEEEcCCce
Confidence            6443   332 34566667776  9999999999999987776    5555554 35667777775  668888889999


Q ss_pred             EEEeeCCCcceeeEeccCccc-eEEEE--EcCCEEEEEeCCCcEEEEEcCCCc---ceEEE-EeecCCccEEEEEeeeCC
Q 016224          295 IRVWNLETLQCIQTLTEHTSV-VMSLL--CWDQFLLSCSLDKTIKVWFATDSG---NLEVT-YTHNEEHGVLALCGMPDS  367 (393)
Q Consensus       295 i~iwd~~~~~~~~~~~~~~~~-v~~l~--~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~-~~~~~~~~v~~~~~~~~~  367 (393)
                      |.+||+++..+++.+....+. -++++  ..+.|||+|+..|.|.|||..+..   ....+ ...+-...|..+.|+++.
T Consensus       368 V~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~  447 (514)
T KOG2055|consen  368 VYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA  447 (514)
T ss_pred             EEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch
Confidence            999999999999998743322 24444  448899999999999999965321   11111 112223457888888877


Q ss_pred             CCCcEEEEEeC--CCeEEEEeCCceeeC
Q 016224          368 EGKPVLLCSCN--DNSVRFYDLPSVIIC  393 (393)
Q Consensus       368 ~~~~~l~s~s~--dg~I~iwd~~s~~lc  393 (393)
                      +   +|+.+|.  +..+++-.+++..++
T Consensus       448 q---iLAiaS~~~knalrLVHvPS~TVF  472 (514)
T KOG2055|consen  448 Q---ILAIASRVKKNALRLVHVPSCTVF  472 (514)
T ss_pred             h---hhhhhhhccccceEEEeccceeee
Confidence            6   7777664  788999999988764

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.74  E-value=1.3e-16  Score=142.69  Aligned_cols=204  Identities=14%  Similarity=0.193  Sum_probs=163.3

Q ss_pred             cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeC
Q 016224          121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISE  200 (393)
Q Consensus       121 ~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  200 (393)
                      .+++|+..+.|+|||+... .+.+.+++|++.|+++.+.-...|||+++..|.|.|..+.++.....|..+         
T Consensus        93 y~~sgG~~~~Vkiwdl~~k-l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~---------  162 (673)
T KOG4378|consen   93 YEISGGQSGCVKIWDLRAK-LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID---------  162 (673)
T ss_pred             eeeccCcCceeeehhhHHH-HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC---------
Confidence            5667999999999999965 677889999999999999999999999999999999999988766555422         


Q ss_pred             CCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEE
Q 016224          201 GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVV  277 (393)
Q Consensus       201 ~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~  277 (393)
                                                 ....|.-+.|++.   +|.+++.+|.|.+||+.....   .......|..+..
T Consensus       163 ---------------------------sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp---~~~~~~~HsAP~~  212 (673)
T KOG4378|consen  163 ---------------------------SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP---IFHASEAHSAPCR  212 (673)
T ss_pred             ---------------------------CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc---ccchhhhccCCcC
Confidence                                       1234557778776   889999999999999988742   2344567888888


Q ss_pred             EEEEc---CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcc-eEEEEe
Q 016224          278 SLVVG---ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGN-LEVTYT  351 (393)
Q Consensus       278 ~l~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~  351 (393)
                      .++|+   +.+|++.+.|..|.+||++..+....+. -..+..+++|.  |.+|+.|...|.|..||++..+. +..+..
T Consensus       213 gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa  291 (673)
T KOG4378|consen  213 GICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA  291 (673)
T ss_pred             cceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee
Confidence            88876   3479999999999999999877776665 34577888887  77999999999999999986654 344444


Q ss_pred             ecCCccEEEEEeeeCC
Q 016224          352 HNEEHGVLALCGMPDS  367 (393)
Q Consensus       352 ~~~~~~v~~~~~~~~~  367 (393)
                      |..  .|.+++|-+..
T Consensus       292 h~~--sVt~vafq~s~  305 (673)
T KOG4378|consen  292 HDA--SVTRVAFQPSP  305 (673)
T ss_pred             ccc--ceeEEEeeecc
Confidence            444  48888887753

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=5.1e-17  Score=147.57  Aligned_cols=243  Identities=17%  Similarity=0.280  Sum_probs=168.6

Q ss_pred             cceEEeeEe--cCcEEEecCCCeEEEEECC-------CCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 016224          110 TDILCRNWV--QGNCMYGEKCKFLHSWTVG-------DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA  180 (393)
Q Consensus       110 ~~i~c~~~~--~~~~~~g~~dg~i~vwd~~-------~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~  180 (393)
                      .-|..++|.  ...+++++.|++|.+|+++       ...+++.+|.+|.++|.|++++++++.+++|+.||+|+.|++.
T Consensus       295 d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p  374 (577)
T KOG0642|consen  295 DCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLP  374 (577)
T ss_pred             hhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccC
Confidence            344444554  4467889999999999993       2257889999999999999999999999999999999999875


Q ss_pred             CCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEe
Q 016224          181 SGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF  256 (393)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~  256 (393)
                      ...--                             +|......+  .+.+|.+.|+.+++++.  .|++++.||+++.|+.
T Consensus       375 ~n~dp-----------------------------~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~  425 (577)
T KOG0642|consen  375 PNQDP-----------------------------DDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEP  425 (577)
T ss_pred             CCCCc-----------------------------ccccCcchhccceeccccceeeeeecccccceeeecCCceEEeecc
Confidence            22100                             111111111  56799999999999876  9999999999999998


Q ss_pred             ccCCccccCceeecCceeeEEEEEEcCC---EEEEecCCCcEEEeeCCCcceeeEeccCc-------cceEEEEEc--CC
Q 016224          257 NVTTNCFEPAASLKGHSLAVVSLVVGAN---KLYSGSMDNSIRVWNLETLQCIQTLTEHT-------SVVMSLLCW--DQ  324 (393)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~l~~~--~~  324 (393)
                      .....+  .......| ..-.++.+-..   +.++...-+.-.++|+...+.+..+....       ..+..+...  ..
T Consensus       426 ~~~~~~--~f~~~~e~-g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~  502 (577)
T KOG0642|consen  426 TEESPC--TFGEPKEH-GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD  502 (577)
T ss_pred             CCcCcc--ccCCcccc-CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC
Confidence            766431  01111122 22234444332   33333334444445555555444443211       223444444  56


Q ss_pred             EEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          325 FLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       325 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      +.+++..|+.|+++|..++..+.....|...  +.++++.|.+.   +|++++.|+.|++|.+..
T Consensus       503 ~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~s--vtslai~~ng~---~l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  503 ITFTAHEDRSIRFFDNKTGKILHSMVAHKDS--VTSLAIDPNGP---YLMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             eeEecccCCceecccccccccchheeeccce--ecceeecCCCc---eEEeecCCceeehhhccc
Confidence            8999999999999999988887777766654  77788777666   999999999999999854

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.73  E-value=1e-15  Score=128.48  Aligned_cols=256  Identities=17%  Similarity=0.193  Sum_probs=184.5

Q ss_pred             CCCeEEEEECCCC--cEEEEEecCCcCCEEEEEecC-CCCEEEEEeCC-------CcEEEEECCCCeE---------EEE
Q 016224          127 KCKFLHSWTVGDG--FKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKD-------ETVRVWDCASGQC---------AGV  187 (393)
Q Consensus       127 ~dg~i~vwd~~~~--~~~~~~l~~h~~~I~~i~~s~-~~~~l~s~s~d-------g~v~iwd~~~~~~---------~~~  187 (393)
                      .|+.|++.+++.+  .-.-..|..|.+.|..|+-+| +.+.|+|+-.+       -.+.||.+.+...         +..
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~  117 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS  117 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence            4677888776643  123346677889999999999 55666776542       2467998865422         222


Q ss_pred             Ee--cCCceEEE--EeCCCEEEEEcCCeEEEEECCCCcee--e-----ecCCCCcEEEEEEeCC---EEEEEeCCCcEEE
Q 016224          188 IN--LGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDL--S-----LSGPVGQVYAMAVGND---LLFAGTQDGAILA  253 (393)
Q Consensus       188 ~~--~~~~~~~~--~~~~~~l~~~~~~~i~v~d~~~~~~~--~-----~~~~~~~v~~l~~~~~---~l~~~~~dg~I~v  253 (393)
                      +.  ..+.+.++  .+++..+++-.++.|.+|++.....+  .     ...+....++-+|+|.   .-+....|+++..
T Consensus       118 Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~  197 (370)
T KOG1007|consen  118 LDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQF  197 (370)
T ss_pred             CCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEE
Confidence            22  11233443  47888888888999999999987763  1     1224556777888884   4455567999999


Q ss_pred             EEeccCCccccCceeecCceeeEEEEEEcCC---EEEEecCCCcEEEeeCCC-cceeeEeccCccceEEEEEc---CCEE
Q 016224          254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGAN---KLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW---DQFL  326 (393)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~---~~~l  326 (393)
                      ||+++...   ....-..|...|..+.++++   +|++++.||.|+|||.+. ..+++++.+|...|.++.|.   .++|
T Consensus       198 ~D~RT~~~---~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi  274 (370)
T KOG1007|consen  198 WDLRTMKK---NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI  274 (370)
T ss_pred             EEccchhh---hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence            99997642   23334568888999999976   599999999999999985 66799999999999999998   6789


Q ss_pred             EEEeCCCcEEEEEcCCCc-----------------------------ceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe
Q 016224          327 LSCSLDKTIKVWFATDSG-----------------------------NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC  377 (393)
Q Consensus       327 ~s~s~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s  377 (393)
                      ++++.|..|.+|....-.                             .++.+  ..++..|.+++|+...+  -+|++-+
T Consensus       275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty--dehEDSVY~~aWSsadP--WiFASLS  350 (370)
T KOG1007|consen  275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY--DEHEDSVYALAWSSADP--WIFASLS  350 (370)
T ss_pred             EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc--cccccceEEEeeccCCC--eeEEEec
Confidence            999999999999654211                             01111  22345699999986644  3788899


Q ss_pred             CCCeEEEEeCCc
Q 016224          378 NDNSVRFYDLPS  389 (393)
Q Consensus       378 ~dg~I~iwd~~s  389 (393)
                      .||.+.|=.++.
T Consensus       351 YDGRviIs~V~r  362 (370)
T KOG1007|consen  351 YDGRVIISSVPR  362 (370)
T ss_pred             cCceEEeecCCh
Confidence            999999877654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.73  E-value=3.5e-16  Score=133.20  Aligned_cols=235  Identities=16%  Similarity=0.162  Sum_probs=162.3

Q ss_pred             CEEEEEecCCCCEEEEEeCCCcEEEEECCCCe------------EEEEEe--cCCce--EEEE-------eCCCEEEE-E
Q 016224          152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQ------------CAGVIN--LGGEV--GCMI-------SEGPWIFI-G  207 (393)
Q Consensus       152 ~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~------------~~~~~~--~~~~~--~~~~-------~~~~~l~~-~  207 (393)
                      -...+.|+|||..|++-+.|..+.+|++....            ...++.  .+..+  .++.       ++..++++ +
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            34567899999999999999999999974210            111111  12222  1121       34445554 4


Q ss_pred             cCCeEEEEECCCCcee---eecCCCCc---EEEEEEeCC-EEEEEeCCCcEEEEEec-cCCccccCcee----ecCceee
Q 016224          208 VTNFVKAWNTQTNTDL---SLSGPVGQ---VYAMAVGND-LLFAGTQDGAILAWKFN-VTTNCFEPAAS----LKGHSLA  275 (393)
Q Consensus       208 ~~~~i~v~d~~~~~~~---~~~~~~~~---v~~l~~~~~-~l~~~~~dg~I~vwd~~-~~~~~~~~~~~----~~~~~~~  275 (393)
                      .+.-|++||.-+++..   ....|...   ..+++|+|| .-+.++....|++||+. .+... ....+    -.+..+-
T Consensus       131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c-~vy~t~~~~k~gq~gi  209 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDC-PVYTTVTKGKFGQKGI  209 (406)
T ss_pred             ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCC-cchhhhhcccccccce
Confidence            7889999999999876   33344444   458999999 44444578899999994 33321 11111    1234666


Q ss_pred             EEEEEEcC---CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeC-CCcEEEEEcCCCcce-EE
Q 016224          276 VVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL-DKTIKVWFATDSGNL-EV  348 (393)
Q Consensus       276 v~~l~~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~-dg~i~iwd~~~~~~~-~~  348 (393)
                      +.++++++   ..++.|+....+-|+.-..+.++..+-+|.+.|+.+.|.  |+.|++|+. |-.|..||++..+.+ ..
T Consensus       210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~  289 (406)
T KOG2919|consen  210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA  289 (406)
T ss_pred             eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence            78888874   479999999999999988999999999999999999998  778888876 779999999876543 33


Q ss_pred             EEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          349 TYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       349 ~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      +..|... .-..+.|--+ +.+++|++|+.||.|++||+..
T Consensus       290 L~rhv~~-TNQRI~FDld-~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  290 LERHVGD-TNQRILFDLD-PKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             hhhhccC-ccceEEEecC-CCCceeeccCCCccEEEEecCC
Confidence            3444331 1223334333 3344999999999999999986

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=3.4e-17  Score=159.91  Aligned_cols=229  Identities=22%  Similarity=0.296  Sum_probs=165.3

Q ss_pred             cCCCeEEEEECC--CCc---EEEEEecCCcCCEEEEEecCCCCE----EEEEeCCCcEEEEECCCCeEEEEEecCCceEE
Q 016224          126 EKCKFLHSWTVG--DGF---KLLTQLEGHQKVVSGITLPSGSDK----LYSGSKDETVRVWDCASGQCAGVINLGGEVGC  196 (393)
Q Consensus       126 ~~dg~i~vwd~~--~~~---~~~~~l~~h~~~I~~i~~s~~~~~----l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~  196 (393)
                      +.+.++.||.+.  +..   +.+..++ -...-+.++|.+.+..    ||.|..||.|.+||...-..-.          
T Consensus        36 st~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~----------  104 (1049)
T KOG0307|consen   36 STSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANA----------  104 (1049)
T ss_pred             ccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccCc----------
Confidence            345556666544  321   2333333 3456788999876654    8889999999999976520000          


Q ss_pred             EEeCCCEEEEEcCCeEEEEECCCCce-eeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCc
Q 016224          197 MISEGPWIFIGVTNFVKAWNTQTNTD-LSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGH  272 (393)
Q Consensus       197 ~~~~~~~l~~~~~~~i~v~d~~~~~~-~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~  272 (393)
                                            .... .....|.+.|..+.|++.   +|++|+.||.|.|||+......+.+-  -...
T Consensus       105 ----------------------~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~--~~~~  160 (1049)
T KOG0307|consen  105 ----------------------SEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG--SQAP  160 (1049)
T ss_pred             ----------------------chHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC--CCCC
Confidence                                  0011 156789999999999875   99999999999999999864332222  2235


Q ss_pred             eeeEEEEEEcC---CEEEEecCCCcEEEeeCCCcceeeEeccCcc--ceEEEEEcCC---EEEEEeCCC---cEEEEEcC
Q 016224          273 SLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLTEHTS--VVMSLLCWDQ---FLLSCSLDK---TIKVWFAT  341 (393)
Q Consensus       273 ~~~v~~l~~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~l~~~~~---~l~s~s~dg---~i~iwd~~  341 (393)
                      ...|.+++|+.   ..|++++.+|.+.|||++..+.+-.+..+..  .+..+.|+++   .|++++.|.   .|.+||++
T Consensus       161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR  240 (1049)
T KOG0307|consen  161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR  240 (1049)
T ss_pred             cccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc
Confidence            67899999984   4699999999999999999888888876655  3578889843   566666654   49999998


Q ss_pred             CCcce-EEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceeeC
Q 016224          342 DSGNL-EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVIIC  393 (393)
Q Consensus       342 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~lc  393 (393)
                      ..... ..+..|.  .+++++.|.+.+  ..+|++++.|+.|.+|+.+++++.
T Consensus       241 ~assP~k~~~~H~--~GilslsWc~~D--~~lllSsgkD~~ii~wN~~tgEvl  289 (1049)
T KOG0307|consen  241 FASSPLKILEGHQ--RGILSLSWCPQD--PRLLLSSGKDNRIICWNPNTGEVL  289 (1049)
T ss_pred             ccCCchhhhcccc--cceeeeccCCCC--chhhhcccCCCCeeEecCCCceEe
Confidence            65544 3333444  459999998764  349999999999999999998863

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.72  E-value=9.6e-14  Score=130.72  Aligned_cols=278  Identities=27%  Similarity=0.436  Sum_probs=201.4

Q ss_pred             cceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCc-CCEEEEEe-cCCCC-EEEEEeC-CCcEEEEE
Q 016224          105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-KVVSGITL-PSGSD-KLYSGSK-DETVRVWD  178 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~-~~I~~i~~-s~~~~-~l~s~s~-dg~v~iwd  178 (393)
                      ...+...+.+..+....  +..++.|+.+.+|+...+...+..+..+. ..+..+.+ ++++. +++..+. |+.+.+|+
T Consensus        61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  140 (466)
T COG2319          61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWD  140 (466)
T ss_pred             eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEE
Confidence            44566788888888654  34577899999999988743677777644 47888888 78777 5555444 99999999


Q ss_pred             CCC-CeEEEEEecCC-ceE--EEEeCCCEEEEEc--CCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEE-eCC
Q 016224          179 CAS-GQCAGVINLGG-EVG--CMISEGPWIFIGV--TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAG-TQD  248 (393)
Q Consensus       179 ~~~-~~~~~~~~~~~-~~~--~~~~~~~~l~~~~--~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~-~~d  248 (393)
                      ... ......+..+. .+.  .+.+++..++.+.  ++.+++|+....... .+..|...|.+++++++  .++++ +.|
T Consensus       141 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  220 (466)
T COG2319         141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD  220 (466)
T ss_pred             ecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCC
Confidence            987 56666555543 333  3345676666663  899999999986655 66779999999999987  24444 899


Q ss_pred             CcEEEEEeccCCccccCce-eecCceee-EEEEEEcCCEEEEecCCCcEEEeeCCCcce-eeEeccCccceEEEEEcC--
Q 016224          249 GAILAWKFNVTTNCFEPAA-SLKGHSLA-VVSLVVGANKLYSGSMDNSIRVWNLETLQC-IQTLTEHTSVVMSLLCWD--  323 (393)
Q Consensus       249 g~I~vwd~~~~~~~~~~~~-~~~~~~~~-v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~~~--  323 (393)
                      +.|.+||....    .... .+..|... +..+..++..+++++.|+.+++||++.... +..+..|...+.++.+.+  
T Consensus       221 ~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  296 (466)
T COG2319         221 GTIRLWDLSTG----KLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG  296 (466)
T ss_pred             CcEEEEECCCC----cEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCC
Confidence            99999987743    3333 46666665 344445566888999999999999987664 555567888999998884  


Q ss_pred             CEEEEEeCCCcEEEEEcCCCcceEEEE--eecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          324 QFLLSCSLDKTIKVWFATDSGNLEVTY--THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       324 ~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      ..+++++.|+.+.+||...........  .+..  .+..+.+ ... ...++..+..|+.+.+|++...
T Consensus       297 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~-~~~~~~~~~~d~~~~~~~~~~~  361 (466)
T COG2319         297 KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSF-SPD-GSLLVSGGSDDGTIRLWDLRTG  361 (466)
T ss_pred             CEEEEeeCCCcEEEEEcCCCceEEEeeecccCC--ceEEEEE-CCC-CCEEEEeecCCCcEEeeecCCC
Confidence            677889999899999887776655554  3332  4777777 422 2223444468899999998765

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.72  E-value=2.2e-16  Score=134.61  Aligned_cols=242  Identities=17%  Similarity=0.291  Sum_probs=168.3

Q ss_pred             ecCCcCCEEEEEecC-----CCCEEEEEeCCCcEEEEECCCCe---EEEEEecCCc----eEEEE----e-CCCEEEE-E
Q 016224          146 LEGHQKVVSGITLPS-----GSDKLYSGSKDETVRVWDCASGQ---CAGVINLGGE----VGCMI----S-EGPWIFI-G  207 (393)
Q Consensus       146 l~~h~~~I~~i~~s~-----~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~~----~~~~~----~-~~~~l~~-~  207 (393)
                      ...|+.+|..++|.+     +-+.+++++. ..+.+|.+...-   .++.+.....    ..+..    . .+.++++ |
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            356889999999974     2345666665 478899876543   2333322211    12211    1 2455655 5


Q ss_pred             cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc-
Q 016224          208 VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG-  282 (393)
Q Consensus       208 ~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-  282 (393)
                      .-|.|++.|+.+++.. .+.+|...|..+.+.|+   ++++++.|.+|++|++++... .....-..+|...|.++.|+ 
T Consensus       113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C-v~VfGG~egHrdeVLSvD~~~  191 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC-VAVFGGVEGHRDEVLSVDFSL  191 (385)
T ss_pred             ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE-EEEecccccccCcEEEEEEcC
Confidence            7889999999999887 88999999999999987   999999999999999998732 12334457899999999997 


Q ss_pred             -CCEEEEecCCCcEEEeeCCCcce------e-------------------e---EeccCccceEEEEEcCCEEEEEeCCC
Q 016224          283 -ANKLYSGSMDNSIRVWNLETLQC------I-------------------Q---TLTEHTSVVMSLLCWDQFLLSCSLDK  333 (393)
Q Consensus       283 -~~~l~sg~~dg~i~iwd~~~~~~------~-------------------~---~~~~~~~~v~~l~~~~~~l~s~s~dg  333 (393)
                       +++|++++.|.+|++|++...+.      .                   -   +-..|...|-|+.|.++++++-|-++
T Consensus       192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscen  271 (385)
T KOG1034|consen  192 DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCEN  271 (385)
T ss_pred             CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCc
Confidence             67999999999999999973211      0                   0   12347777888888899999999999


Q ss_pred             cEEEEEcCC-CcceEE---------EE-eec-CCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          334 TIKVWFATD-SGNLEV---------TY-THN-EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       334 ~i~iwd~~~-~~~~~~---------~~-~~~-~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      .|..|..-+ .+.+..         +. ... ....+.-+.|..+. -+++|+.|...|.|.+|||+..
T Consensus       272 aI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq~g~v~vwdL~~~  339 (385)
T KOG1034|consen  272 AIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQSGKVYVWDLDNN  339 (385)
T ss_pred             eEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccCCCcEEEEECCCC
Confidence            999998721 111111         11 111 11123334443332 2238999999999999999764

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.71  E-value=1.6e-13  Score=129.16  Aligned_cols=276  Identities=27%  Similarity=0.442  Sum_probs=199.1

Q ss_pred             cccceeecceEEeeEecCc--EEEecC-CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCC-EEEEEeCCCcEEEEE
Q 016224          103 NNRAVIKTDILCRNWVQGN--CMYGEK-CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWD  178 (393)
Q Consensus       103 ~~~~~~~~~i~c~~~~~~~--~~~g~~-dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~-~l~s~s~dg~v~iwd  178 (393)
                      .....|...|.++.|+++.  ++.++. ++.+++|++.++ ..+..+.+|...|.+++|+|++. ++++++.|+.|++||
T Consensus       149 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd  227 (466)
T COG2319         149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD  227 (466)
T ss_pred             EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC-ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEE
Confidence            3344566788899998876  445654 999999999986 78888999999999999999998 555669999999999


Q ss_pred             CCCCeEEE-EEecCCce--EEEEeCCCEEE-EEcCCeEEEEECCCCce-e-eecCCCCcEEEEEEeCC--EEEEEeCCCc
Q 016224          179 CASGQCAG-VINLGGEV--GCMISEGPWIF-IGVTNFVKAWNTQTNTD-L-SLSGPVGQVYAMAVGND--LLFAGTQDGA  250 (393)
Q Consensus       179 ~~~~~~~~-~~~~~~~~--~~~~~~~~~l~-~~~~~~i~v~d~~~~~~-~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~  250 (393)
                      ...+.... .+..+...  ..+.+++.+++ ++.++.+++|+...... . ....|...+.++.+.|+  .+++++.|+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~  307 (466)
T COG2319         228 LSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT  307 (466)
T ss_pred             CCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCc
Confidence            98777777 45444332  24445665665 45889999999987664 3 44578899999999984  6777888899


Q ss_pred             EEEEEeccCCccccCceee--cCceeeEEEEEEcC--CEEEEe-cCCCcEEEeeCCCcceeeEeccCccceEEEEEcC--
Q 016224          251 ILAWKFNVTTNCFEPAASL--KGHSLAVVSLVVGA--NKLYSG-SMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD--  323 (393)
Q Consensus       251 I~vwd~~~~~~~~~~~~~~--~~~~~~v~~l~~~~--~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--  323 (393)
                      +.+||+.....    ....  ..|...+..+.+..  ..++.+ ..|+.+.+|++.............. +..+.+..  
T Consensus       308 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  382 (466)
T COG2319         308 VRLWDLETGKL----LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDG  382 (466)
T ss_pred             EEEEEcCCCce----EEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEECCCC
Confidence            99998876632    2222  35666677777732  355555 6889999999988773333333322 56665554  


Q ss_pred             CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          324 QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       324 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      ..+..+..++.+.+|+..............  ..+....+.++..   .+++++.++.+++|++.+
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         383 RVVSSGSTDGTVRLWDLSTGSLLRNLDGHT--SRVTSLDFSPDGK---SLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             CEEEEecCCCceEEEecccCeeeeeccCCC--CcEEEEEECCCCc---EEEEecCCCcEEEEeccC
Confidence            223337889999999998766554444332  3466677766555   888889999999999876

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=1.5e-15  Score=138.85  Aligned_cols=229  Identities=18%  Similarity=0.279  Sum_probs=166.9

Q ss_pred             cceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCC--EEEEEeC----------
Q 016224          105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD--KLYSGSK----------  170 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~--~l~s~s~----------  170 (393)
                      ...|.+.|.|+...+.  -+++|+.||+|+||.+.++ .++++++ -.+.|.||+|+|.+.  .||++-.          
T Consensus       396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg-Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~  473 (733)
T KOG0650|consen  396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG-RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF  473 (733)
T ss_pred             EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc-eEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence            4567888888877655  4667999999999999999 7887776 456888888888654  3333221          


Q ss_pred             ----------------------CCcEEEEECC------CCeEE--------EEEe-------------------------
Q 016224          171 ----------------------DETVRVWDCA------SGQCA--------GVIN-------------------------  189 (393)
Q Consensus       171 ----------------------dg~v~iwd~~------~~~~~--------~~~~-------------------------  189 (393)
                                            |+.+..|.-.      .+-++        ..+.                         
T Consensus       474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL  553 (733)
T KOG0650|consen  474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL  553 (733)
T ss_pred             cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence                                  1223344321      01011        1111                         


Q ss_pred             -----------cCCceEE--EEeCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeC--CEEEEEeCCCcEEE
Q 016224          190 -----------LGGEVGC--MISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGN--DLLFAGTQDGAILA  253 (393)
Q Consensus       190 -----------~~~~~~~--~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~--~~l~~~~~dg~I~v  253 (393)
                                 ..+.+.+  +.+...+++++....|++||+..+..+ .+......|..|++++  +.|+.++.|+.+..
T Consensus       554 SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~W  633 (733)
T KOG0650|consen  554 SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCW  633 (733)
T ss_pred             ccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEE
Confidence                       0011111  224566788889999999999887666 5666677899999998  59999999999999


Q ss_pred             EEeccCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCC------C---cceeeEeccCccc----eEE
Q 016224          254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLE------T---LQCIQTLTEHTSV----VMS  318 (393)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~------~---~~~~~~~~~~~~~----v~~  318 (393)
                      +|+...+   ++.+.+.-|...+.++++.+.  +|++|+.||++.|+--.      .   --++..+.+|...    |..
T Consensus       634 fDldlss---kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd  710 (733)
T KOG0650|consen  634 FDLDLSS---KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLD  710 (733)
T ss_pred             EEcccCc---chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEe
Confidence            9998876   667788889999999999987  59999999999998532      1   2346778888776    888


Q ss_pred             EEEcC--CEEEEEeCCCcEEEE
Q 016224          319 LLCWD--QFLLSCSLDKTIKVW  338 (393)
Q Consensus       319 l~~~~--~~l~s~s~dg~i~iw  338 (393)
                      ..|++  -+|++++.||+|++|
T Consensus       711 ~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  711 TIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ecccCCCceEEecCCCceEEee
Confidence            88985  489999999999998

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=1.1e-14  Score=127.07  Aligned_cols=279  Identities=15%  Similarity=0.149  Sum_probs=194.0

Q ss_pred             cccceeecceEEeeEecCcE--EEecCCCeEEEEECCCC-----cEEEEEec-CCcCCEEEEEecCCCCEEEEEeCCCcE
Q 016224          103 NNRAVIKTDILCRNWVQGNC--MYGEKCKFLHSWTVGDG-----FKLLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETV  174 (393)
Q Consensus       103 ~~~~~~~~~i~c~~~~~~~~--~~g~~dg~i~vwd~~~~-----~~~~~~l~-~h~~~I~~i~~s~~~~~l~s~s~dg~v  174 (393)
                      +....|.+-|..++|+.+..  ++|+.|..+++|+++..     .+++.... .|.+.|.|++|....++|++|..+++|
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            44556778899999997754  46889999999998732     14444433 356999999999999999999999999


Q ss_pred             EEEECCCCeEEEEEecCCc---eEEE--Ee-CCCEEEEEcCCeEEEEECCCCc----eeeecCCCCcEEEEEEeCC---E
Q 016224          175 RVWDCASGQCAGVINLGGE---VGCM--IS-EGPWIFIGVTNFVKAWNTQTNT----DLSLSGPVGQVYAMAVGND---L  241 (393)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~---~~~~--~~-~~~~l~~~~~~~i~v~d~~~~~----~~~~~~~~~~v~~l~~~~~---~  241 (393)
                      .+.|+++.+.+..+.....   +-.+  .+ ++.++++..++.|.+||.+...    .+.+.........+.|+|.   +
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL  209 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence            9999999999988877653   3222  23 4555566788999999998765    2234445566778889886   8


Q ss_pred             EEEEeCCCcEEEEEeccCCccccCc---eeecCceeeEEEEEE--cCCEEEEecCCCcEEEeeCCCcce-eeEeccCc--
Q 016224          242 LFAGTQDGAILAWKFNVTTNCFEPA---ASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQC-IQTLTEHT--  313 (393)
Q Consensus       242 l~~~~~dg~I~vwd~~~~~~~~~~~---~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~--  313 (393)
                      |++.+..+-+-+||.+......-..   ..+......-+..-|  +|+.|++--....-.+||+.+.++ +..+. |.  
T Consensus       210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~  288 (609)
T KOG4227|consen  210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPN  288 (609)
T ss_pred             EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCC
Confidence            9999999999999998765321111   111111222244445  467777766666677888877444 33333 22  


Q ss_pred             -----cceEEEEEcCC-EEEEEeCCCcEEEEEcCCCc-----------------------ceEEEEeecCCccEEEEEee
Q 016224          314 -----SVVMSLLCWDQ-FLLSCSLDKTIKVWFATDSG-----------------------NLEVTYTHNEEHGVLALCGM  364 (393)
Q Consensus       314 -----~~v~~l~~~~~-~l~s~s~dg~i~iwd~~~~~-----------------------~~~~~~~~~~~~~v~~~~~~  364 (393)
                           ..+.+++|.++ -+++|+.+-.|++|.+....                       .+.++.+|..  -+..+.|+
T Consensus       289 GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRS--v~NQVRF~  366 (609)
T KOG4227|consen  289 GYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRS--VPNQVRFS  366 (609)
T ss_pred             cceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccc--cccceeec
Confidence                 24567777755 58899999999999875211                       1223333333  36678887


Q ss_pred             eCCCCCcEEEEEeCCCeEEEEeC
Q 016224          365 PDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       365 ~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      |...   +|++.+-...++||.-
T Consensus       367 ~H~~---~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  367 QHNN---LLVSSGVENSFKLWSD  386 (609)
T ss_pred             CCcc---eEeccchhhheecccc
Confidence            7665   8888889999999963

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.68  E-value=1e-16  Score=151.44  Aligned_cols=269  Identities=15%  Similarity=0.225  Sum_probs=201.2

Q ss_pred             cceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224          105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      ...|.+.|+|..|...  .+++|+.|..++||..+++ .++..+.||++.|+.++.+.+..+++++|.|..|++|.+..+
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~  264 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG  264 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccch-hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence            3457789999999754  5778999999999999998 899999999999999999999999999999999999999999


Q ss_pred             eEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCcee-e----ecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEE
Q 016224          183 QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL-S----LSGPVGQVYAMAVGND--LLFAGTQDGAILAWK  255 (393)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~-~----~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd  255 (393)
                      ..+..+..+......+....+-.++.||++++||.+-.... .    .......+.++.|..+  .+++++.|+.-..|.
T Consensus       265 ~pvsvLrghtgavtaiafsP~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e  344 (1113)
T KOG0644|consen  265 APVSVLRGHTGAVTAIAFSPRASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHE  344 (1113)
T ss_pred             chHHHHhccccceeeeccCccccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccch
Confidence            99888876654444333333446678899999998822111 1    1112344556666554  788899998887776


Q ss_pred             eccCCccccCceeecCceeeEEEEEE---cCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc---CCEEEEE
Q 016224          256 FNVTTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSC  329 (393)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~  329 (393)
                      +....          .+...+.-+..   ...+.+++-.+-.+.+|++.+|++.+.+.+|...+..+.++   +....++
T Consensus       345 ~~~l~----------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msa  414 (1113)
T KOG0644|consen  345 FEQLA----------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSA  414 (1113)
T ss_pred             hhHhh----------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhc
Confidence            54321          11111111111   12467777788899999999999999999999999999887   4567899


Q ss_pred             eCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          330 SLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       330 s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      +.||...|||+-.+..+......  ...+..-.|++++.   .++....-|.++|.....
T Consensus       415 g~dgst~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgt---s~~lsd~hgql~i~g~gq  469 (1113)
T KOG0644|consen  415 GYDGSTIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGT---SIALSDDHGQLYILGTGQ  469 (1113)
T ss_pred             cCCCceEeeecccCCcceeeecc--cceeeccccCCCCc---eEecCCCCCceEEeccCC
Confidence            99999999999888777666533  34477778877765   677777778888876543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.67  E-value=3.2e-13  Score=124.33  Aligned_cols=260  Identities=16%  Similarity=0.251  Sum_probs=158.7

Q ss_pred             EecCCCeEEEEECCC-C-cEEEEEecCCcCCEEEEEecCCCCEEEEEe-CCCcEEEEECC-CCeE--EEEEecCCce--E
Q 016224          124 YGEKCKFLHSWTVGD-G-FKLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVWDCA-SGQC--AGVINLGGEV--G  195 (393)
Q Consensus       124 ~g~~dg~i~vwd~~~-~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s-~dg~v~iwd~~-~~~~--~~~~~~~~~~--~  195 (393)
                      +...++.|++|++.+ + .+.+..+. +......++++|++++|++++ .++.|.+|++. +++.  +.........  .
T Consensus         7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i   85 (330)
T PRK11028          7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHI   85 (330)
T ss_pred             EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEE
Confidence            356789999999964 3 23555554 446677899999999987765 47899999997 3432  3333333222  3


Q ss_pred             EEEeCCCEEEEE--cCCeEEEEECCCCc----eeeecCCCCcEEEEEEeCC--EE-EEEeCCCcEEEEEeccCCcccc--
Q 016224          196 CMISEGPWIFIG--VTNFVKAWNTQTNT----DLSLSGPVGQVYAMAVGND--LL-FAGTQDGAILAWKFNVTTNCFE--  264 (393)
Q Consensus       196 ~~~~~~~~l~~~--~~~~i~v~d~~~~~----~~~~~~~~~~v~~l~~~~~--~l-~~~~~dg~I~vwd~~~~~~~~~--  264 (393)
                      .+.+++++++++  .++.|.+|++.+..    .............++++|+  ++ ++...++.|.+||+........  
T Consensus        86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~  165 (330)
T PRK11028         86 STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE  165 (330)
T ss_pred             EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence            344688888876  47899999997432    1222223345677888887  44 5556679999999976321100  


Q ss_pred             -CceeecCceeeEEEEEE--cCCEEEEecC-CCcEEEeeCCC--c--ceeeEeccCc------cceEEEEEc--CCEEEE
Q 016224          265 -PAASLKGHSLAVVSLVV--GANKLYSGSM-DNSIRVWNLET--L--QCIQTLTEHT------SVVMSLLCW--DQFLLS  328 (393)
Q Consensus       265 -~~~~~~~~~~~v~~l~~--~~~~l~sg~~-dg~i~iwd~~~--~--~~~~~~~~~~------~~v~~l~~~--~~~l~s  328 (393)
                       ....... ......+.+  ++++++++.. ++.|.+||+..  +  +.+.++....      .....+.++  +++|++
T Consensus       166 ~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv  244 (330)
T PRK11028        166 PAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA  244 (330)
T ss_pred             CCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE
Confidence             0011111 112233444  5668777765 89999999973  2  3344443221      122345555  678887


Q ss_pred             Ee-CCCcEEEEEcCCCcceEEEEee-cCCccEEEEEeeeCCCCCcEEEEEeC-CCeEEEEeCC
Q 016224          329 CS-LDKTIKVWFATDSGNLEVTYTH-NEEHGVLALCGMPDSEGKPVLLCSCN-DNSVRFYDLP  388 (393)
Q Consensus       329 ~s-~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~s~s~-dg~I~iwd~~  388 (393)
                      +. .++.|.+|++........+..+ ........+.++|++.   +|+++.. +++|.+|++.
T Consensus       245 ~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~---~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        245 CDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGK---YLIAAGQKSHHISVYEID  304 (330)
T ss_pred             ecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCC---EEEEEEccCCcEEEEEEc
Confidence            75 4789999999654432222222 1112344677777644   6776654 8999999874

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.66  E-value=2.5e-14  Score=125.40  Aligned_cols=256  Identities=15%  Similarity=0.229  Sum_probs=164.8

Q ss_pred             eecceEEeeEecC---cEEEecCCCeEEEEECCCC--------cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEE
Q 016224          108 IKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDG--------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRV  176 (393)
Q Consensus       108 ~~~~i~c~~~~~~---~~~~g~~dg~i~vwd~~~~--------~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~i  176 (393)
                      ...+++.+.|..+   .+.+|+.|..|++|-+..+        .+.+..|..|..+|+++.|+|+|++||||+.+|.|.+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            3447888877654   4568999999999987632        2456688899999999999999999999999999999


Q ss_pred             EECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEE
Q 016224          177 WDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAW  254 (393)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vw  254 (393)
                      |....-...   ....  ..-.....++                ....+.+|...|..++|+++  ++++++.|..+++|
T Consensus        92 Wk~~~~~~~---~~d~--e~~~~ke~w~----------------v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~  150 (434)
T KOG1009|consen   92 WKQGDVRIF---DADT--EADLNKEKWV----------------VKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLW  150 (434)
T ss_pred             EEecCcCCc---cccc--hhhhCccceE----------------EEEEecccccchhhhhccCCCceeeeeeccceEEEE
Confidence            987641100   0000  0000000000                01256679999999999998  99999999999999


Q ss_pred             EeccCCccccCceeecCceeeEEEEEEcC--CEEEEecCCCcEEEeeCCCc-----------------------------
Q 016224          255 KFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETL-----------------------------  303 (393)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~iwd~~~~-----------------------------  303 (393)
                      |+..+    .....+.+|...+..++|++  .++++-+.|...+.+++...                             
T Consensus       151 Dv~~G----~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhD  226 (434)
T KOG1009|consen  151 DVHAG----QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHD  226 (434)
T ss_pred             Eeccc----eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeec
Confidence            99987    44555666666666666652  34555444443333332211                             


Q ss_pred             ----------------------------------------------ceeeEeccCccceEEEEEcC--------------
Q 016224          304 ----------------------------------------------QCIQTLTEHTSVVMSLLCWD--------------  323 (393)
Q Consensus       304 ----------------------------------------------~~~~~~~~~~~~v~~l~~~~--------------  323 (393)
                                                                    +++..+.....++..+.+++              
T Consensus       227 eTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~  306 (434)
T KOG1009|consen  227 ETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFL  306 (434)
T ss_pred             CchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccc
Confidence                                                          11111112222233333321              


Q ss_pred             -----CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          324 -----QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       324 -----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                           +++++......|.|||..+...+...... +-..++.++|++++.   +|+..|.||...+--++..+|
T Consensus       307 ~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~---~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  307 FVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGS---VLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             cccccceEEEEeecceEEEeccccccceEEEeee-eeeeecceeecCCCc---EEEEeccCCceEEEEEcchhc
Confidence                 23334444568999998776666554432 234589999988766   999999999887766665543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.66  E-value=2.9e-14  Score=121.53  Aligned_cols=221  Identities=18%  Similarity=0.201  Sum_probs=169.9

Q ss_pred             ecceEEeeEecC--cEEEecCCCeEEEEECCCC--cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECC-CCe
Q 016224          109 KTDILCRNWVQG--NCMYGEKCKFLHSWTVGDG--FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA-SGQ  183 (393)
Q Consensus       109 ~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~--~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~-~~~  183 (393)
                      ..+|+|.+|+.+  .++++.....|.||.....  ++..++++.|...|+.|+|+|..+.|++++.|..-.||... .++
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence            359999999987  4556778889999987643  57899999999999999999999999999999999999984 333


Q ss_pred             EEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCc
Q 016224          184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN  261 (393)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~  261 (393)
                      -..+                                   +.+..+....+++.|+|+  .|++|+....|.||-++....
T Consensus        90 Wkpt-----------------------------------lvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd  134 (361)
T KOG1523|consen   90 WKPT-----------------------------------LVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND  134 (361)
T ss_pred             eccc-----------------------------------eeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc
Confidence            2221                                   244567788999999997  999999999999998887654


Q ss_pred             cccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCC------------------CcceeeEeccCccceEEEEE
Q 016224          262 CFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLE------------------TLQCIQTLTEHTSVVMSLLC  321 (393)
Q Consensus       262 ~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~------------------~~~~~~~~~~~~~~v~~l~~  321 (393)
                      -+...+.-+.+...|.+++|.++  +|++|+.|+..+||..-                  -|+++.++....+.+..+.|
T Consensus       135 WWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f  214 (361)
T KOG1523|consen  135 WWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF  214 (361)
T ss_pred             eehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe
Confidence            44444445567888999999855  78999999999999642                  13455556566778999999


Q ss_pred             c--CCEEEEEeCCCcEEEEEcCCCcc-eEEEEeecCCccEEEEEeeeC
Q 016224          322 W--DQFLLSCSLDKTIKVWFATDSGN-LEVTYTHNEEHGVLALCGMPD  366 (393)
Q Consensus       322 ~--~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~  366 (393)
                      +  |..|+-.+.|..+.+-|.....+ +.....  ...+.+++.|...
T Consensus       215 s~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~--~~lP~ls~~~ise  260 (361)
T KOG1523|consen  215 SPSGNRLAWVGHDSTVSFVDAAGPSERVQSVAT--AQLPLLSVSWISE  260 (361)
T ss_pred             CCCCCEeeEecCCCceEEeecCCCchhccchhh--ccCCceeeEeecC
Confidence            8  88999999999999999866542 222222  1245666666543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=5.2e-14  Score=115.64  Aligned_cols=182  Identities=16%  Similarity=0.265  Sum_probs=141.6

Q ss_pred             ceEEeeEe--cCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 016224          111 DILCRNWV--QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI  188 (393)
Q Consensus       111 ~i~c~~~~--~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~  188 (393)
                      +|..+-..  .+.+++++.|+.++-||+++| +..+++++|++.|.++.--.....++||+.||+++|||+.+++++..+
T Consensus       116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~i  194 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAGGDGVIYQVDLEDG-RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMI  194 (325)
T ss_pred             ccceeEeccCCCcEEEecCCeEEEEEEecCC-EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEe
Confidence            55555444  457888889999999999999 999999999999999998555567999999999999999999999888


Q ss_pred             ecCC-----------ceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEec
Q 016224          189 NLGG-----------EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFN  257 (393)
Q Consensus       189 ~~~~-----------~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~  257 (393)
                      ..-.           -+.++.-+..++++|....+.+|+++..+..........+..+.|..+.++++++...|.-|.+.
T Consensus       195 e~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  195 EPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             ccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeeeeec
Confidence            6432           23556678899999999999999999999998888889999999999999999999999999876


Q ss_pred             cCCccccCceeecCceeeEEEEEEc--CC-EEEEecCCCcEEEe
Q 016224          258 VTTNCFEPAASLKGHSLAVVSLVVG--AN-KLYSGSMDNSIRVW  298 (393)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~l~~~--~~-~l~sg~~dg~i~iw  298 (393)
                      ..     +..........+++.+++  +- +|-.++....+.|+
T Consensus       275 Gv-----l~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  275 GV-----LQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             cE-----EEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            53     222233333344555554  22 34445555555554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.65  E-value=4.8e-14  Score=138.80  Aligned_cols=255  Identities=19%  Similarity=0.242  Sum_probs=171.0

Q ss_pred             EECCCCcEEEEEecCCcCCEEEEEecCCC-CEEEEEeCCCcEEEEECCCC-------eEEEEEe-cCCceE--EEEeCCC
Q 016224          134 WTVGDGFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASG-------QCAGVIN-LGGEVG--CMISEGP  202 (393)
Q Consensus       134 wd~~~~~~~~~~l~~h~~~I~~i~~s~~~-~~l~s~s~dg~v~iwd~~~~-------~~~~~~~-~~~~~~--~~~~~~~  202 (393)
                      |+. .| .++..+..|+..|..++.+++. .+++|||.||+|++||+.+-       +...++. ....+.  .+...+.
T Consensus      1034 W~p-~G-~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNP-RG-ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred             CCc-cc-eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence            554 34 7899999999999999997655 99999999999999998642       2233333 233333  3345566


Q ss_pred             EEEE-EcCCeEEEEECCCCc--ee------ee-cCCCCcEEEEE-EeC---C-EEEEEeCCCcEEEEEeccCCccccCce
Q 016224          203 WIFI-GVTNFVKAWNTQTNT--DL------SL-SGPVGQVYAMA-VGN---D-LLFAGTQDGAILAWKFNVTTNCFEPAA  267 (393)
Q Consensus       203 ~l~~-~~~~~i~v~d~~~~~--~~------~~-~~~~~~v~~l~-~~~---~-~l~~~~~dg~I~vwd~~~~~~~~~~~~  267 (393)
                      .+++ +.||.|++.++....  ..      .. ....+.+.+|. +..   . .++.++.-+.|..||++.....+....
T Consensus      1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred             eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence            5555 589999999887622  11      11 11233444443 322   2 788899999999999998754433332


Q ss_pred             eecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEec-cCccceEEEEEc---C--CEEEEEe--CCCcEEE
Q 016224          268 SLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLT-EHTSVVMSLLCW---D--QFLLSCS--LDKTIKV  337 (393)
Q Consensus       268 ~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~---~--~~l~s~s--~dg~i~i  337 (393)
                      .  ...+.|++++.+  ++.+++|+..|.+.+||++-+.++..+. .+..++..+...   +  ...++++  ..+.|.+
T Consensus      1192 ~--~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1192 Q--LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred             C--ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence            2  345678888876  5689999999999999999998888876 355677776665   3  4555544  4678999


Q ss_pred             EEcCCCcceEEEEeecCC--------c------cEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          338 WFATDSGNLEVTYTHNEE--------H------GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       338 wd~~~~~~~~~~~~~~~~--------~------~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      |++.++.....+......        .      ......+......+.++++|+.|..|+.||...-+.
T Consensus      1270 wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             eecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence            999888665555443110        0      011111111123445899999999999999876544

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.65  E-value=1.7e-14  Score=121.38  Aligned_cols=244  Identities=15%  Similarity=0.218  Sum_probs=168.5

Q ss_pred             ceEEeeEe----cC-cEEEec----CCCeEEEEECC--CCcEEEEE-ecCCcCCEEEEEecCCC-----CEEEEEeCCCc
Q 016224          111 DILCRNWV----QG-NCMYGE----KCKFLHSWTVG--DGFKLLTQ-LEGHQKVVSGITLPSGS-----DKLYSGSKDET  173 (393)
Q Consensus       111 ~i~c~~~~----~~-~~~~g~----~dg~i~vwd~~--~~~~~~~~-l~~h~~~I~~i~~s~~~-----~~l~s~s~dg~  173 (393)
                      +++.+.|+    .. .+..|+    ..+.|.|-.+.  ++ +.+.. --.|.-+++.+-|.|+.     ++|||++  ..
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~-e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~  122 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG-ELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF  122 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC-ceeccCCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence            66777777    11 233444    34566665544  33 22221 13589999999999876     3566654  38


Q ss_pred             EEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEe---CCEEEEEeCCCc
Q 016224          174 VRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVG---NDLLFAGTQDGA  250 (393)
Q Consensus       174 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~---~~~l~~~~~dg~  250 (393)
                      +++|.+...+.....+.      .                   +.+.   +...+..+++++.|+   |+++.+.+-|-+
T Consensus       123 LRlWri~~ee~~~~~~~------~-------------------L~~~---kns~~~aPlTSFDWne~dp~~igtSSiDTT  174 (364)
T KOG0290|consen  123 LRLWRIGDEESRVELQS------V-------------------LNNN---KNSEFCAPLTSFDWNEVDPNLIGTSSIDTT  174 (364)
T ss_pred             EEEEeccCcCCceehhh------h-------------------hccC---cccccCCcccccccccCCcceeEeecccCe
Confidence            99999874321111100      0                   0000   123456788888886   459999999999


Q ss_pred             EEEEEeccCCccccCceeecCceeeEEEEEEcC---CEEEEecCCCcEEEeeCCCcceeeEe---ccCccceEEEEEc--
Q 016224          251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTL---TEHTSVVMSLLCW--  322 (393)
Q Consensus       251 I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~l~~~--  322 (393)
                      ..|||++.+.. ......+..|...|..++|..   +.|++.+.||.||+||++..+.-..+   .....+...++|+  
T Consensus       175 CTiWdie~~~~-~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkq  253 (364)
T KOG0290|consen  175 CTIWDIETGVS-GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ  253 (364)
T ss_pred             EEEEEEeeccc-cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcC
Confidence            99999998621 234567788999999999974   47999999999999999976543222   2235567888887  


Q ss_pred             -CCEEEEEeCC-CcEEEEEcCCCcc-eEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          323 -DQFLLSCSLD-KTIKVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       323 -~~~l~s~s~d-g~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                       .+++++-..| ..|.|.|++.... +..+..|..  .|.+++|.|.+..  .|+|++.|..+-+||+.+.
T Consensus       254 DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a--~VNgIaWaPhS~~--hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  254 DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA--SVNGIAWAPHSSS--HICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             CchHHhhhhcCCceEEEEEecCCCcceehhhcCcc--cccceEecCCCCc--eeeecCCcceEEEEecccc
Confidence             5688887766 4699999987654 344455544  5999999998654  7999999999999999764

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.65  E-value=1.2e-13  Score=117.75  Aligned_cols=230  Identities=13%  Similarity=0.190  Sum_probs=169.0

Q ss_pred             CEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe---cCCceEEEEeCCCE-EEEE-cC------CeEEEEECCCC
Q 016224          152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN---LGGEVGCMISEGPW-IFIG-VT------NFVKAWNTQTN  220 (393)
Q Consensus       152 ~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~-l~~~-~~------~~i~v~d~~~~  220 (393)
                      ...+++|+.|...++.|..+| .+||+++--+.....+   .+-.+.-+....++ .++| ..      +.|.|||-...
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            344589999988888877665 7999987533221111   11112222333333 3344 22      47999997777


Q ss_pred             ceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecC--ceeeEEEEEEcCC--EEEE-ecCCCcE
Q 016224          221 TDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKG--HSLAVVSLVVGAN--KLYS-GSMDNSI  295 (393)
Q Consensus       221 ~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~--~l~s-g~~dg~i  295 (393)
                      +.+.......+|.++.+.++.+++.- .+.|+||.+....   +.+..+..  .....+++....+  +||. |-.-|.|
T Consensus        86 ~~i~el~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~---k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv  161 (346)
T KOG2111|consen   86 RCIIELSFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNP---KLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV  161 (346)
T ss_pred             cEEEEEEeccceeeEEEcCCeEEEEe-cCeEEEEEcCCCh---hheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence            77777778889999999999777764 6789999988543   33333322  2334566665432  4444 4467999


Q ss_pred             EEeeCCCcce--eeEeccCccceEEEEEc--CCEEEEEeCCCc-EEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCC
Q 016224          296 RVWNLETLQC--IQTLTEHTSVVMSLLCW--DQFLLSCSLDKT-IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGK  370 (393)
Q Consensus       296 ~iwd~~~~~~--~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  370 (393)
                      +|-|+...+.  ...+.+|...|.+++..  |..+||+|..|+ |||||..++..+.++........+.+++|+|+..  
T Consensus       162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s--  239 (346)
T KOG2111|consen  162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS--  239 (346)
T ss_pred             EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc--
Confidence            9999986554  47788999999999988  889999999998 8999999999999998888888899999999887  


Q ss_pred             cEEEEEeCCCeEEEEeCCc
Q 016224          371 PVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       371 ~~l~s~s~dg~I~iwd~~s  389 (393)
                       +|+++|+.|+|+|+.+..
T Consensus       240 -~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  240 -WLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             -EEEEEcCCCeEEEEEeec
Confidence             999999999999999865

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.64  E-value=1.9e-12  Score=112.59  Aligned_cols=224  Identities=14%  Similarity=0.146  Sum_probs=169.1

Q ss_pred             ceEEeeEecCcEE--EecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCC--cEEEEECCCCeEEE
Q 016224          111 DILCRNWVQGNCM--YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE--TVRVWDCASGQCAG  186 (393)
Q Consensus       111 ~i~c~~~~~~~~~--~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg--~v~iwd~~~~~~~~  186 (393)
                      .+.+..|..+..+  .|+.||. +++..+.-.+. .........|.-+-|+.  .++|..+.+.  .+++.+...+..+.
T Consensus         7 ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~-~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~IC   82 (391)
T KOG2110|consen    7 TINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKC-FSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTIC   82 (391)
T ss_pred             ceeeeeeccceeEEEccCCCce-eEEecCchHHh-hcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEE
Confidence            4555567766433  4777775 56766543231 11122234455556654  4676666654  49999999999999


Q ss_pred             EEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCcee-ee---cCCCCcEEEEEEeCC--EEEEE--eCCCcEEEEEecc
Q 016224          187 VINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL-SL---SGPVGQVYAMAVGND--LLFAG--TQDGAILAWKFNV  258 (393)
Q Consensus       187 ~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~---~~~~~~v~~l~~~~~--~l~~~--~~dg~I~vwd~~~  258 (393)
                      .+..+.++.++--+.+.|++.....|+|||+++.+.+ ++   ..+...+.++.+++.  +|+.-  ...|.|.+||..+
T Consensus        83 e~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n  162 (391)
T KOG2110|consen   83 EIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN  162 (391)
T ss_pred             EEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc
Confidence            9999999999988888888887777999999999887 22   235556777777765  66653  3578999999987


Q ss_pred             CCccccCceeecCceeeEEEEEEc--CCEEEEecCCCc-EEEeeCCCcceeeEeccCc--cceEEEEEc--CCEEEEEeC
Q 016224          259 TTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNS-IRVWNLETLQCIQTLTEHT--SVVMSLLCW--DQFLLSCSL  331 (393)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~-i~iwd~~~~~~~~~~~~~~--~~v~~l~~~--~~~l~s~s~  331 (393)
                      -    ++...+..|.+.+.+++++  |.+|||++..|+ ||||.+.+|+.+.+|+-..  ..|.+++|+  .++|++.|.
T Consensus       163 l----~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~  238 (391)
T KOG2110|consen  163 L----QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN  238 (391)
T ss_pred             c----eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence            6    6678888999999999986  779999999885 6899999999999997443  456889998  679999999


Q ss_pred             CCcEEEEEcCC
Q 016224          332 DKTIKVWFATD  342 (393)
Q Consensus       332 dg~i~iwd~~~  342 (393)
                      .++|+||.+.+
T Consensus       239 TeTVHiFKL~~  249 (391)
T KOG2110|consen  239 TETVHIFKLEK  249 (391)
T ss_pred             CCeEEEEEecc
Confidence            99999998864

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.64  E-value=1.4e-15  Score=135.37  Aligned_cols=223  Identities=13%  Similarity=0.165  Sum_probs=179.4

Q ss_pred             CCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEE--EEeCCCEEEEEcCCeEEEEECCCCceeeecCC
Q 016224          151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC--MISEGPWIFIGVTNFVKAWNTQTNTDLSLSGP  228 (393)
Q Consensus       151 ~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~  228 (393)
                      -.-..+.++.+|++|+.|+.-|.|-.+|..+++....+...+.+..  ++....+++++..+.++|||-..-+...+.. 
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~-  208 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKR-  208 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhh-
Confidence            3446788999999999999999999999999999999888776644  4568888999999999999977655544444 


Q ss_pred             CCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC--CEEEEecCCCcEEEeeCCCcc
Q 016224          229 VGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQ  304 (393)
Q Consensus       229 ~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~iwd~~~~~  304 (393)
                      ...|..+.|-|.  +|++++..|.+..-|+..+    +++..+..-.+.+..+.-++  ..+-+|...|+|.+|.....+
T Consensus       209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G----klVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske  284 (545)
T KOG1272|consen  209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTG----KLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE  284 (545)
T ss_pred             cCchhhhcccchhheeeecccCCceEEEeechh----hhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence            457888999998  8889999999999999998    55666666666677777664  468889999999999999999


Q ss_pred             eeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeE
Q 016224          305 CIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSV  382 (393)
Q Consensus       305 ~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I  382 (393)
                      ++..+-.|.++|.+|+++  |.|++|.+.|..++|||++....+..... ..  +...++++..+    +|+.+ ....|
T Consensus       285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~--~a~~ls~Sqkg----lLA~~-~G~~v  356 (545)
T KOG1272|consen  285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PH--PASNLSLSQKG----LLALS-YGDHV  356 (545)
T ss_pred             hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CC--Ccccccccccc----ceeee-cCCee
Confidence            999999999999999998  88999999999999999998876666555 22  34445544322    34444 44578


Q ss_pred             EEEe
Q 016224          383 RFYD  386 (393)
Q Consensus       383 ~iwd  386 (393)
                      .||.
T Consensus       357 ~iw~  360 (545)
T KOG1272|consen  357 QIWK  360 (545)
T ss_pred             eeeh
Confidence            8985

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.64  E-value=5.9e-15  Score=128.84  Aligned_cols=162  Identities=19%  Similarity=0.290  Sum_probs=133.5

Q ss_pred             eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCcc---ccCceeecCceeeEEEEEEcC---CEEEEecCCCc
Q 016224          224 SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC---FEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNS  294 (393)
Q Consensus       224 ~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~---~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~  294 (393)
                      ...+|..+|..++|+|-   .+|+|++|.+|.||++-.....   .+++..+.+|...|-.+.|.+   +.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            56789999999999874   9999999999999998764322   366788999999999999984   58999999999


Q ss_pred             EEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcE
Q 016224          295 IRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPV  372 (393)
Q Consensus       295 i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  372 (393)
                      |.+||+.+++.+-++. |...|.++.|+  |.+|++.+.|.+|+|||.++++.+..-..|....... ..|..++.   +
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~R-aifl~~g~---i  230 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPAR-AIFLASGK---I  230 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcce-eEEeccCc---e
Confidence            9999999999999988 99999999998  8899999999999999999998887776666554333 44554433   5


Q ss_pred             EEEEe---CCCeEEEEeCCce
Q 016224          373 LLCSC---NDNSVRFYDLPSV  390 (393)
Q Consensus       373 l~s~s---~dg~I~iwd~~s~  390 (393)
                      +.||-   ++.++-+||....
T Consensus       231 ~tTGfsr~seRq~aLwdp~nl  251 (472)
T KOG0303|consen  231 FTTGFSRMSERQIALWDPNNL  251 (472)
T ss_pred             eeeccccccccceeccCcccc
Confidence            55543   4788999987654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.63  E-value=1.3e-12  Score=111.53  Aligned_cols=230  Identities=13%  Similarity=0.175  Sum_probs=166.1

Q ss_pred             ceEEeeEecC-cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe-CC------CcEEEEECCCC
Q 016224          111 DILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS-KD------ETVRVWDCASG  182 (393)
Q Consensus       111 ~i~c~~~~~~-~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s-~d------g~v~iwd~~~~  182 (393)
                      ....+.|..| .+++...|.-.+||+.+-- +.....+.+...+.-+..---.++|+-.+ .+      ..|.|||-...
T Consensus         7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~-ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPF-KESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEecCceEEEecCch-hhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            3445788766 5677667777899997642 33222333333322222222345665433 32      48999998888


Q ss_pred             eEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCcee----eecCCCCcEEEEEEeCC--EEE-EEeCCCcEEEEE
Q 016224          183 QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL----SLSGPVGQVYAMAVGND--LLF-AGTQDGAILAWK  255 (393)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~----~~~~~~~~v~~l~~~~~--~l~-~~~~dg~I~vwd  255 (393)
                      +++.++....++..+.-....|++-..+.|.+|....+..+    ..........+++-..+  +|+ -|-.-|.|.|-|
T Consensus        86 ~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~d  165 (346)
T KOG2111|consen   86 RCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVD  165 (346)
T ss_pred             cEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEE
Confidence            99999999999999999999999999999999998854322    22222333555554444  333 356779999999


Q ss_pred             eccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCc-EEEeeCCCcceeeEecc--CccceEEEEEc--CCEEEE
Q 016224          256 FNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNS-IRVWNLETLQCIQTLTE--HTSVVMSLLCW--DQFLLS  328 (393)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~-i~iwd~~~~~~~~~~~~--~~~~v~~l~~~--~~~l~s  328 (393)
                      +.....  .....+..|...|.+++.+  |.++||++..|+ |||||.++++++.+++-  ....|.+++|+  ..+|++
T Consensus       166 L~~~~~--~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav  243 (346)
T KOG2111|consen  166 LASTKP--NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV  243 (346)
T ss_pred             hhhcCc--CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE
Confidence            987642  2346778899999999886  789999999986 78999999999999973  45678999999  568999


Q ss_pred             EeCCCcEEEEEcCCC
Q 016224          329 CSLDKTIKVWFATDS  343 (393)
Q Consensus       329 ~s~dg~i~iwd~~~~  343 (393)
                      +|..|+|.||.++..
T Consensus       244 sSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  244 SSDKGTLHIFSLRDT  258 (346)
T ss_pred             EcCCCeEEEEEeecC
Confidence            999999999998753

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=3.7e-13  Score=128.72  Aligned_cols=282  Identities=14%  Similarity=0.226  Sum_probs=191.0

Q ss_pred             ccceeecceEEeeEecCc--EEEecCCCeEEEEECCC---CcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEE
Q 016224          104 NRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGD---GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (393)
Q Consensus       104 ~~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~---~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd  178 (393)
                      ...+|...++|.++++..  +++|..||.|.+|.--.   .....+.+.=|...|.+++|+++|.+|+||+..|.+.+|.
T Consensus       200 ~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq  279 (792)
T KOG1963|consen  200 ITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQ  279 (792)
T ss_pred             hhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEe
Confidence            344566668999999875  44688999999996332   2244567788999999999999999999999999999999


Q ss_pred             CCCCeEEEEEecCCceEEE--EeCCCEEEE-EcCCeEEEEECCCCcee-eec-----------CCCCcEEEEEEeCC--E
Q 016224          179 CASGQCAGVINLGGEVGCM--ISEGPWIFI-GVTNFVKAWNTQTNTDL-SLS-----------GPVGQVYAMAVGND--L  241 (393)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~--~~~~~~l~~-~~~~~i~v~d~~~~~~~-~~~-----------~~~~~v~~l~~~~~--~  241 (393)
                      +++++....-..+..+..+  .+++...+. -.|+.|.+....+.... .+.           ...+-.+.++++|.  .
T Consensus       280 ~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~  359 (792)
T KOG1963|consen  280 LETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS  359 (792)
T ss_pred             ecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence            9999855445566665443  356665554 58999999887655433 111           12445667778774  8


Q ss_pred             EEEEeCCCcEEEEEeccCCccccCceeec-------CceeeEEEEEEc--CCEEEEec--------CC--CcEEEeeCCC
Q 016224          242 LFAGTQDGAILAWKFNVTTNCFEPAASLK-------GHSLAVVSLVVG--ANKLYSGS--------MD--NSIRVWNLET  302 (393)
Q Consensus       242 l~~~~~dg~I~vwd~~~~~~~~~~~~~~~-------~~~~~v~~l~~~--~~~l~sg~--------~d--g~i~iwd~~~  302 (393)
                      ++..+..|.|.+||+.+....++......       .+...+++++.+  +++++|.-        .|  -.+++|-...
T Consensus       360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~  439 (792)
T KOG1963|consen  360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP  439 (792)
T ss_pred             eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence            88889999999999988765433322211       123344444432  66777653        23  3577886543


Q ss_pred             cc----eeeEe-ccCccceEEEEEc----CCEEEEEeCCCcEEEEEcCCCcce------E--EEEeecCCccEEEEEeee
Q 016224          303 LQ----CIQTL-TEHTSVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNL------E--VTYTHNEEHGVLALCGMP  365 (393)
Q Consensus       303 ~~----~~~~~-~~~~~~v~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~~------~--~~~~~~~~~~v~~~~~~~  365 (393)
                      ..    +...+ ..|...+...++.    ....++++.||.++||-+...+..      .  ....+.+..++.+.+|+.
T Consensus       440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~  519 (792)
T KOG1963|consen  440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ  519 (792)
T ss_pred             CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence            32    22222 3577666666555    237899999999999988432211      1  111222445688888887


Q ss_pred             CCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          366 DSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       366 ~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      |+.    +++.+.|++|.+||..+
T Consensus       520 dGs----lla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  520 DGS----LLAVSFDDTITIWDYDT  539 (792)
T ss_pred             CCc----EEEEecCCEEEEecCCC
Confidence            765    66777889999999987

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=1.6e-14  Score=124.03  Aligned_cols=180  Identities=17%  Similarity=0.284  Sum_probs=127.8

Q ss_pred             cCCeEEEEECCCCcee-eecCCCCcEEEEEEeC----CEEEEEeCCCcEEEEEeccCCccccCceeecCce-eeEEEEEE
Q 016224          208 VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGN----DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHS-LAVVSLVV  281 (393)
Q Consensus       208 ~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~----~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~-~~v~~l~~  281 (393)
                      ..+.|++||..++..+ .+.++...+..+.|..    +.+.+++.||+|++||++....  ........+. .+..+++.
T Consensus        48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e--~a~~~~~~~~~~~f~~ld~  125 (376)
T KOG1188|consen   48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE--SARISWTQQSGTPFICLDL  125 (376)
T ss_pred             cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh--hhheeccCCCCCcceEeec
Confidence            4444555555444444 4566677777777744    4999999999999999998754  3334444454 45566766


Q ss_pred             c--CCEEEEec----CCCcEEEeeCCCcce-eeEe-ccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcceEE-E
Q 016224          282 G--ANKLYSGS----MDNSIRVWNLETLQC-IQTL-TEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEV-T  349 (393)
Q Consensus       282 ~--~~~l~sg~----~dg~i~iwd~~~~~~-~~~~-~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~-~  349 (393)
                      +  ++.+++|+    .+-.|.+||+|..+. +..+ ..|...|+++.|.   +++|++||.||-|.|||++....-.. +
T Consensus       126 nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~  205 (376)
T KOG1188|consen  126 NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALL  205 (376)
T ss_pred             cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHH
Confidence            4  55677765    367899999998765 5554 5799999999998   57999999999999999975532211 1


Q ss_pred             EeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          350 YTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       350 ~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      ...+....|..+.|+...-  +.|.+-+..++..+|+++.+.
T Consensus       206 ~viN~~sSI~~igw~~~~y--krI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  206 HVINHGSSIHLIGWLSKKY--KRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             HhhcccceeeeeeeecCCc--ceEEEEEccCceeEEEccCCC
Confidence            2233445578888876542  258888999999999998764

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=3.4e-14  Score=137.89  Aligned_cols=232  Identities=18%  Similarity=0.233  Sum_probs=159.6

Q ss_pred             CEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc----eEE--EEe--CCC-EEEEEcCCeEEEEECCCC--
Q 016224          152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE----VGC--MIS--EGP-WIFIGVTNFVKAWNTQTN--  220 (393)
Q Consensus       152 ~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~----~~~--~~~--~~~-~l~~~~~~~i~v~d~~~~--  220 (393)
                      .-..+.|+|-...++++...-.|+|||.+.+++...|..+..    +..  ++.  +.. +++++.||.|+||+--..  
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence            455678888888999998778999999999999888876543    222  222  333 445569999999975332  


Q ss_pred             ---cee-ee---cC----CCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CC
Q 016224          221 ---TDL-SL---SG----PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---AN  284 (393)
Q Consensus       221 ---~~~-~~---~~----~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~  284 (393)
                         +.+ ..   .+    ..+.-.-+.|...  .|++++.-..|+|||......   ......+....+++++.+   ++
T Consensus      1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~---~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV---VADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred             CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee---EeecccCCCccceeecccccCCc
Confidence               222 11   11    1111123344433  777777789999999987632   111222345567777764   78


Q ss_pred             EEEEecCCCcEEEeeCCCc---ceeeEeccCccc--eEEEEEc--C-CEEEEEeCCCcEEEEEcCCCcce--EEEEeecC
Q 016224          285 KLYSGSMDNSIRVWNLETL---QCIQTLTEHTSV--VMSLLCW--D-QFLLSCSLDKTIKVWFATDSGNL--EVTYTHNE  354 (393)
Q Consensus       285 ~l~sg~~dg~i~iwd~~~~---~~~~~~~~~~~~--v~~l~~~--~-~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~  354 (393)
                      .+++|..||.|++||.+..   ..+..++.|...  |..+.+.  | ..|++|+.||.|++||++.....  ..+..+-.
T Consensus      1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred             eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc
Confidence            9999999999999999863   357778888887  8888887  2 26999999999999999874221  11222221


Q ss_pred             -CccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          355 -EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       355 -~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                       ....+++..++..+   ++++|+. +.|+||++..-
T Consensus      1303 yGs~lTal~VH~hap---iiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1303 YGSALTALTVHEHAP---IIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred             cCccceeeeeccCCC---eeeecCc-ceEEEEecChh
Confidence             22377787777776   8999988 99999998643

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=6.8e-13  Score=126.96  Aligned_cols=269  Identities=21%  Similarity=0.263  Sum_probs=192.7

Q ss_pred             EecC-cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCC---CEEEEEeCCCcEEEEECCCCeEEEEEecCC
Q 016224          117 WVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS---DKLYSGSKDETVRVWDCASGQCAGVINLGG  192 (393)
Q Consensus       117 ~~~~-~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~---~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~  192 (393)
                      |+++ ..+++..+..|.||.+.++ ++++.+.+|..+++.+.+.|..   .++++++.||+|++||...+..++++....
T Consensus        24 fSnD~k~l~~~~~~~V~VyS~~Tg-~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~  102 (792)
T KOG1963|consen   24 FSNDAKFLFLCTGNFVKVYSTATG-ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL  102 (792)
T ss_pred             cccCCcEEEEeeCCEEEEEecchH-hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC
Confidence            4544 5667888899999999999 8889999999999999997754   478899999999999999998888775433


Q ss_pred             ceEEEE-------------------------------------------------------------eCCCEEEEEcCCe
Q 016224          193 EVGCMI-------------------------------------------------------------SEGPWIFIGVTNF  211 (393)
Q Consensus       193 ~~~~~~-------------------------------------------------------------~~~~~l~~~~~~~  211 (393)
                      ++..+.                                                             ..+.+.....+..
T Consensus       103 ~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~  182 (792)
T KOG1963|consen  103 PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCK  182 (792)
T ss_pred             ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeee
Confidence            221110                                                             0122222334456


Q ss_pred             EEEEECCCCcee-----eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--
Q 016224          212 VKAWNTQTNTDL-----SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--  282 (393)
Q Consensus       212 i~v~d~~~~~~~-----~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--  282 (393)
                      +.+|+.......     .-..|...+++.+++|+  +++++..||.|.+|.--...........+.-|...|.+++|+  
T Consensus       183 ~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~  262 (792)
T KOG1963|consen  183 IHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD  262 (792)
T ss_pred             EEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC
Confidence            677777664422     12345566788888887  999999999999996544222223445667788889888885  


Q ss_pred             CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecC------
Q 016224          283 ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE------  354 (393)
Q Consensus       283 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------  354 (393)
                      |.+|++|+..+.+.+|.+.+++ .+-+.--.++|..+.++  +.+.+....|.+|.+....+......+.+...      
T Consensus       263 G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k  341 (792)
T KOG1963|consen  263 GAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTK  341 (792)
T ss_pred             CceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccc
Confidence            7799999999999999999988 44455567788888888  56888888899999998765443333332211      


Q ss_pred             ---CccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          355 ---EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       355 ---~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                         ..-.+.+++.|...   .++-.+..|.|.+||+-+-
T Consensus       342 ~~~~~l~t~~~idpr~~---~~vln~~~g~vQ~ydl~td  377 (792)
T KOG1963|consen  342 TRPQSLTTGVSIDPRTN---SLVLNGHPGHVQFYDLYTD  377 (792)
T ss_pred             ccccccceeEEEcCCCC---ceeecCCCceEEEEecccc
Confidence               12244556655333   5777778999999998654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.60  E-value=1.7e-13  Score=130.30  Aligned_cols=231  Identities=13%  Similarity=0.151  Sum_probs=161.5

Q ss_pred             eecceEEeeEec---CcEEEecCCCeEEEEECCCCcEE-E----EEecCCcCCEEEEEecCCC--CEEEEEeCCCcEEEE
Q 016224          108 IKTDILCRNWVQ---GNCMYGEKCKFLHSWTVGDGFKL-L----TQLEGHQKVVSGITLPSGS--DKLYSGSKDETVRVW  177 (393)
Q Consensus       108 ~~~~i~c~~~~~---~~~~~g~~dg~i~vwd~~~~~~~-~----~~l~~h~~~I~~i~~s~~~--~~l~s~s~dg~v~iw  177 (393)
                      -..+|+|+.|.+   ..++.|..+|.|.+||+..+... .    .....|..+++.+.|..+.  .-+++++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            345899999874   45677999999999999865221 2    2234689999999995543  559999999999999


Q ss_pred             ECCCCeEE-EEE-----e-------cCCceEEEE---eC-CCEEEEEcCCeEEEEE---CCCCc------eeeecCCCCc
Q 016224          178 DCASGQCA-GVI-----N-------LGGEVGCMI---SE-GPWIFIGVTNFVKAWN---TQTNT------DLSLSGPVGQ  231 (393)
Q Consensus       178 d~~~~~~~-~~~-----~-------~~~~~~~~~---~~-~~~l~~~~~~~i~v~d---~~~~~------~~~~~~~~~~  231 (393)
                      +++.-... ...     .       ......++.   .+ ..+++...+|.|..-+   .....      ......|.+.
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            87653321 111     1       001112221   13 3344445777776633   33333      2255678899


Q ss_pred             EEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC---EEEEecCCCcEEEeeCCC--c
Q 016224          232 VYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN---KLYSGSMDNSIRVWNLET--L  303 (393)
Q Consensus       232 v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~l~sg~~dg~i~iwd~~~--~  303 (393)
                      |+++.++|-   .|++++ |-+|++|......   .++..+..+...+++++|++.   .|+++..||.|.+||+..  .
T Consensus       401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~---~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~  476 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA---SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE  476 (555)
T ss_pred             eEeeecCCCccceeeeec-cceeEeccccCCC---CcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc
Confidence            999998875   555555 9999999876322   667777778888999999854   699999999999999964  4


Q ss_pred             ceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCC
Q 016224          304 QCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATD  342 (393)
Q Consensus       304 ~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~  342 (393)
                      .++.+...+....+.+.++  ++.|++|...|++.+|++..
T Consensus       477 ~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  477 EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            5566665565555666666  67899999999999999853

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.60  E-value=3.7e-13  Score=132.70  Aligned_cols=233  Identities=18%  Similarity=0.222  Sum_probs=158.8

Q ss_pred             eeecceEEeeEecCc---EEEecCCCeEEEEECCCC------cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEE
Q 016224          107 VIKTDILCRNWVQGN---CMYGEKCKFLHSWTVGDG------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW  177 (393)
Q Consensus       107 ~~~~~i~c~~~~~~~---~~~g~~dg~i~vwd~~~~------~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iw  177 (393)
                      +|+..+..++.+.+.   +++|+.||+|++|+...-      .+...++......+.++.+.+.++.+|.++.||.|++.
T Consensus      1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred             hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEE
Confidence            455566667766543   568999999999997631      23334455567889999999999999999999999999


Q ss_pred             ECCCCe-------EEEEEe--cCCceEEEE----eCCC-EEEEE-cCCeEEEEECCCCcee---eecCCCCcEEEEEEeC
Q 016224          178 DCASGQ-------CAGVIN--LGGEVGCMI----SEGP-WIFIG-VTNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGN  239 (393)
Q Consensus       178 d~~~~~-------~~~~~~--~~~~~~~~~----~~~~-~l~~~-~~~~i~v~d~~~~~~~---~~~~~~~~v~~l~~~~  239 (393)
                      +++...       +.+...  ..+.+..+.    .... .++.+ .-+.|..||++.....   +.....+.|++++.+|
T Consensus      1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp 1205 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP 1205 (1431)
T ss_pred             EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC
Confidence            987621       111111  122333332    1233 44444 6679999999987755   4455678899999998


Q ss_pred             C--EEEEEeCCCcEEEEEeccCCccccCceee-cCceeeEEEEEEc---C--CE-EEEec-CCCcEEEeeCCCcceeeEe
Q 016224          240 D--LLFAGTQDGAILAWKFNVTTNCFEPAASL-KGHSLAVVSLVVG---A--NK-LYSGS-MDNSIRVWNLETLQCIQTL  309 (393)
Q Consensus       240 ~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~---~--~~-l~sg~-~dg~i~iwd~~~~~~~~~~  309 (393)
                      .  .+++|+..|.+.+||++-...    +... ..+...+..+..+   +  .. +.+++ ..+.|.+|++.++.+..++
T Consensus      1206 ~~~WlviGts~G~l~lWDLRF~~~----i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1206 WCNWLVIGTSRGQLVLWDLRFRVP----ILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred             CceEEEEecCCceEEEEEeecCce----eecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence            7  999999999999999998742    3322 2344566666554   2  33 34444 5789999999998776666


Q ss_pred             ccC-c----------------cc---eEEEEEc-CCEEEEEeCCCcEEEEEcCCC
Q 016224          310 TEH-T----------------SV---VMSLLCW-DQFLLSCSLDKTIKVWFATDS  343 (393)
Q Consensus       310 ~~~-~----------------~~---v~~l~~~-~~~l~s~s~dg~i~iwd~~~~  343 (393)
                      ... .                ..   +.+.... +.++++|+.|..|+.||....
T Consensus      1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence            432 1                11   1111122 568999999999999998643

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=2.2e-14  Score=130.18  Aligned_cols=165  Identities=18%  Similarity=0.263  Sum_probs=127.6

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCC
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN  220 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~  220 (393)
                      .+.++|.||++.|.+++|+.+|.+|++||.|-.+.|||.-..+.+..+.                               
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-------------------------------   89 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS-------------------------------   89 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-------------------------------
Confidence            3446789999999999999999999999999999999998777665543                               


Q ss_pred             ceeeecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEEeccCCc------cccCceeecCceeeEEEEEEc---CCEEE
Q 016224          221 TDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVTTN------CFEPAASLKGHSLAVVSLVVG---ANKLY  287 (393)
Q Consensus       221 ~~~~~~~~~~~v~~l~~~~~----~l~~~~~dg~I~vwd~~~~~~------~~~~~~~~~~~~~~v~~l~~~---~~~l~  287 (393)
                           .+|...|.++.|-|.    ++++|..|..|+++|+...+.      ..+.......|...|..|+..   ++.+.
T Consensus        90 -----TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfw  164 (758)
T KOG1310|consen   90 -----TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFW  164 (758)
T ss_pred             -----cccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEE
Confidence                 578899999999775    899999999999999985321      123445566788888777764   47899


Q ss_pred             EecCCCcEEEeeCCCcce-eeE---------eccCccceEEEEEc---CCEEEEEeCCCcEEEEEcC
Q 016224          288 SGSMDNSIRVWNLETLQC-IQT---------LTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFAT  341 (393)
Q Consensus       288 sg~~dg~i~iwd~~~~~~-~~~---------~~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~  341 (393)
                      ++++||+|+-+|++.... -..         +...--...++..+   +.+|++|+.|-..++||.+
T Consensus       165 sasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  165 SASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             EecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            999999999999986221 111         11111233566666   5699999999999999943

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=2.6e-13  Score=129.09  Aligned_cols=228  Identities=12%  Similarity=0.005  Sum_probs=152.3

Q ss_pred             CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC---CcEEEEECCCCeEEEE--EecCCceEEEEeCCC
Q 016224          128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCASGQCAGV--INLGGEVGCMISEGP  202 (393)
Q Consensus       128 dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d---g~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~  202 (393)
                      +..|.+||.+.. . .+.+..|...+.+.+|+|||+.|+.++.+   ..|.+||+.+++....  +........+.++++
T Consensus       183 ~~~i~i~d~dg~-~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~  260 (429)
T PRK01742        183 PYEVRVADYDGF-N-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGS  260 (429)
T ss_pred             eEEEEEECCCCC-C-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCC
Confidence            578999998654 3 45677788899999999999999988754   3699999988764333  322233455668888


Q ss_pred             EEEEE--cCCe--EEEEECCCCceeeecCCCCcEEEEEEeCC--E-EEEEeCCCcEEEEEeccCCccccCceeecCceee
Q 016224          203 WIFIG--VTNF--VKAWNTQTNTDLSLSGPVGQVYAMAVGND--L-LFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA  275 (393)
Q Consensus       203 ~l~~~--~~~~--i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~-l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~  275 (393)
                      .|+.+  .++.  |.+||+.++....+..+...+....|+|+  . ++++..++...+|++........   .+ .+...
T Consensus       261 ~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~---~l-~~~~~  336 (429)
T PRK01742        261 RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS---LV-GGRGY  336 (429)
T ss_pred             EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE---Ee-cCCCC
Confidence            77764  4564  55667777777777777778889999998  4 44555678899998865432111   11 22222


Q ss_pred             EEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcC--CCcceEEEEe
Q 016224          276 VVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFAT--DSGNLEVTYT  351 (393)
Q Consensus       276 v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~  351 (393)
                      ...++.++++|+..+.++ +.+||+.+++.......+  ....+.|+  +++|+.++.++.+.+|++.  ++.....+..
T Consensus       337 ~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~  413 (429)
T PRK01742        337 SAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG  413 (429)
T ss_pred             CccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence            233455677888777665 556999888754332222  22344555  7799999999988888763  4555555544


Q ss_pred             ecCCccEEEEEeeeC
Q 016224          352 HNEEHGVLALCGMPD  366 (393)
Q Consensus       352 ~~~~~~v~~~~~~~~  366 (393)
                      +..  .+...+|+|.
T Consensus       414 ~~g--~~~~p~wsp~  426 (429)
T PRK01742        414 SDG--QVKFPAWSPY  426 (429)
T ss_pred             CCC--CCCCcccCCC
Confidence            433  3666777764

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=1.6e-13  Score=119.96  Aligned_cols=241  Identities=13%  Similarity=0.147  Sum_probs=168.2

Q ss_pred             EEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC------CeEEEEEecC--CceEEEE--eCCCEEEEE-cCCeE
Q 016224          144 TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS------GQCAGVINLG--GEVGCMI--SEGPWIFIG-VTNFV  212 (393)
Q Consensus       144 ~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~------~~~~~~~~~~--~~~~~~~--~~~~~l~~~-~~~~i  212 (393)
                      +.+.+|.+.|.+|.|+.++++|++|+.|..+++|+++.      .+.+.....+  ..+.++.  ..+.++++| .+++|
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            45678999999999999999999999999999999864      3445444433  3344444  366777776 78899


Q ss_pred             EEEECCCCceeeecCCCC---cEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CC
Q 016224          213 KAWNTQTNTDLSLSGPVG---QVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---AN  284 (393)
Q Consensus       213 ~v~d~~~~~~~~~~~~~~---~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~  284 (393)
                      .+.|+++.+.+....|..   .|+.+..+|.  .|++.+.++.|.+||.+.......+.. +........++.|+   +.
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-~AN~~~~F~t~~F~P~~P~  208 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL-PANSGKNFYTAEFHPETPA  208 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee-ecCCCccceeeeecCCCce
Confidence            999999999886555554   8999999885  999999999999999998754323222 22233445566666   45


Q ss_pred             EEEEecCCCcEEEeeCCCcce-eeE------eccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCC
Q 016224          285 KLYSGSMDNSIRVWNLETLQC-IQT------LTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE  355 (393)
Q Consensus       285 ~l~sg~~dg~i~iwd~~~~~~-~~~------~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  355 (393)
                      +|++.+..+-+-+||.+..+. +..      +......-.++.|+  |..|++--....-.+||+.+..+......|...
T Consensus       209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~  288 (609)
T KOG4227|consen  209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPN  288 (609)
T ss_pred             eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCC
Confidence            899999999999999985332 111      11112223556666  666666655556677888665544433333331


Q ss_pred             -----ccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          356 -----HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       356 -----~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                           ..+-+++|.-+-    .+++|+.+-.|++|.++.
T Consensus       289 GY~N~~T~KS~~F~~D~----~v~tGSD~~~i~~WklP~  323 (609)
T KOG4227|consen  289 GYCNIKTIKSMTFIDDY----TVATGSDHWGIHIWKLPR  323 (609)
T ss_pred             cceeeeeeeeeeeecce----eeeccCcccceEEEecCC
Confidence                 234556665443    499999999999999874

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.58  E-value=6e-14  Score=127.07  Aligned_cols=202  Identities=12%  Similarity=0.154  Sum_probs=152.0

Q ss_pred             CcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEe
Q 016224          120 GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS  199 (393)
Q Consensus       120 ~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  199 (393)
                      +.++..+.||.+.+.+- .+ +..+.+..|.++|.+-.|+|||.-|+|++.||.|++|.-. |-...             
T Consensus        76 d~~~i~s~DGkf~il~k-~~-rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRS-------------  139 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNK-SA-RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRS-------------  139 (737)
T ss_pred             ceEEEEcCCceEEEecc-cc-hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHH-------------
Confidence            45678899999999873 34 6667889999999999999999999999999999999843 21111             


Q ss_pred             CCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeE
Q 016224          200 EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV  276 (393)
Q Consensus       200 ~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v  276 (393)
                                              .+.....+|.|++|.|+   .+++.  .+.+.+=.+...    ..+...+.|.+-|
T Consensus       140 ------------------------tl~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~n----~k~i~WkAHDGii  189 (737)
T KOG1524|consen  140 ------------------------TVVQNEESIRCARWAPNSNSIVFCQ--GGHISIKPLAAN----SKIIRWRAHDGLV  189 (737)
T ss_pred             ------------------------HHhhcCceeEEEEECCCCCceEEec--CCeEEEeecccc----cceeEEeccCcEE
Confidence                                    22345678999999887   44443  455555544443    3345678899999


Q ss_pred             EEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecC
Q 016224          277 VSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE  354 (393)
Q Consensus       277 ~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  354 (393)
                      .+++|+  .+.+++|++|-..++||.. |+.+.+-..|..+|++++|.++.++..+.-.+++            + ....
T Consensus       190 L~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R------------~-~~p~  255 (737)
T KOG1524|consen  190 LSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEKDYLLWSYNTAR------------F-SSPR  255 (737)
T ss_pred             EEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccccceeeeeeeeee------------e-cCCC
Confidence            999998  5689999999999999965 7788888899999999999965433333333444            1 1222


Q ss_pred             CccEEEEEeeeCCCCCcEEEEEeCCCeEEE
Q 016224          355 EHGVLALCGMPDSEGKPVLLCSCNDNSVRF  384 (393)
Q Consensus       355 ~~~v~~~~~~~~~~~~~~l~s~s~dg~I~i  384 (393)
                      ...+..++|++|+.   .+++|+..|.|.+
T Consensus       256 ~GSifnlsWS~DGT---Q~a~gt~~G~v~~  282 (737)
T KOG1524|consen  256 VGSIFNLSWSADGT---QATCGTSTGQLIV  282 (737)
T ss_pred             ccceEEEEEcCCCc---eeeccccCceEEE
Confidence            34689999999877   7999998888754

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.56  E-value=4.1e-15  Score=140.83  Aligned_cols=238  Identities=18%  Similarity=0.306  Sum_probs=175.3

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc-eEEEE--eCCCEEEEE-cCCeEEEEE
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-VGCMI--SEGPWIFIG-VTNFVKAWN  216 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~--~~~~~l~~~-~~~~i~v~d  216 (393)
                      +.++.|.+|..+|+|..|...|.++++|+.|..|+||..+++.++.....+.. +..+.  ..+.+++++ .|..|++|.
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            45567789999999999999999999999999999999999999988876643 33332  344455544 777999999


Q ss_pred             CCCCcee-eecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCC
Q 016224          217 TQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDN  293 (393)
Q Consensus       217 ~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg  293 (393)
                      +..+..+ .+.+|.+.|++++|+|-.  +.+.||++++||.+-....+.+.-.-......+.++.+.  +..++|++.|+
T Consensus       261 l~~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~  338 (1113)
T KOG0644|consen  261 LPDGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG  338 (1113)
T ss_pred             cCCCchHHHHhccccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence            9999988 889999999999999964  778999999999984322222211111122344455553  55799999999


Q ss_pred             cEEEeeCCCcceeeEeccCccceEEEEE---cCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCC
Q 016224          294 SIRVWNLETLQCIQTLTEHTSVVMSLLC---WDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGK  370 (393)
Q Consensus       294 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  370 (393)
                      .-..|.+.....      +...+.-+..   ...+.+++-.+-.+.+|++.++.....+.+|.+.  +..+.++|..+  
T Consensus       339 ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~--~yvLd~Hpfn~--  408 (1113)
T KOG0644|consen  339 EARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDE--VYVLDVHPFNP--  408 (1113)
T ss_pred             ccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccc--eeeeeecCCCc--
Confidence            998887653221      1111111111   1356777778889999999998888888888776  67777888755  


Q ss_pred             cEEEEEeCCCeEEEEeCCce
Q 016224          371 PVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       371 ~~l~s~s~dg~I~iwd~~s~  390 (393)
                      ++..+++.||...|||+-.|
T Consensus       409 ri~msag~dgst~iwdi~eg  428 (1113)
T KOG0644|consen  409 RIAMSAGYDGSTIIWDIWEG  428 (1113)
T ss_pred             HhhhhccCCCceEeeecccC
Confidence            36678999999999998655

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=7.4e-14  Score=125.17  Aligned_cols=278  Identities=18%  Similarity=0.182  Sum_probs=199.3

Q ss_pred             ceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecC--CCCEEEEEeCCCcEEEEECCC
Q 016224          106 AVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS--GSDKLYSGSKDETVRVWDCAS  181 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~--~~~~l~s~s~dg~v~iwd~~~  181 (393)
                      ..|++-|.-+.|...  .+++|+.|..|.+||...+...+.-..+|...|..-.|-|  +.+.|++++.||.|++=.+..
T Consensus       139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~  218 (559)
T KOG1334|consen  139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE  218 (559)
T ss_pred             cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence            346677777777744  4567999999999999988566666678999999888977  446899999999999987654


Q ss_pred             -CeEEEE---EecCCceEE--EEe--CCCEEEEEcCCeEEEEECCCCcee----eecCCCC---cEEEEEEeCC---EEE
Q 016224          182 -GQCAGV---INLGGEVGC--MIS--EGPWIFIGVTNFVKAWNTQTNTDL----SLSGPVG---QVYAMAVGND---LLF  243 (393)
Q Consensus       182 -~~~~~~---~~~~~~~~~--~~~--~~~~l~~~~~~~i~v~d~~~~~~~----~~~~~~~---~v~~l~~~~~---~l~  243 (393)
                       +.+..+   .++.+++.-  +.+  ...++.+|.|+.+.-+|++.....    ....+..   ....++.+|.   .++
T Consensus       219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~fa  298 (559)
T KOG1334|consen  219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFA  298 (559)
T ss_pred             ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccc
Confidence             333322   233333332  333  455677789999999999877543    2222233   4567777765   899


Q ss_pred             EEeCCCcEEEEEeccCCcc--------ccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCC--c--------
Q 016224          244 AGTQDGAILAWKFNVTTNC--------FEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET--L--------  303 (393)
Q Consensus       244 ~~~~dg~I~vwd~~~~~~~--------~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~--~--------  303 (393)
                      +++.|..+++||.+.-...        +.+..........|+++.++  +.-|++...|-.|+++.-..  |        
T Consensus       299 VgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~  378 (559)
T KOG1334|consen  299 VGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSP  378 (559)
T ss_pred             cCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcc
Confidence            9999999999998764321        11111122345678899886  44577777888999995432  2        


Q ss_pred             --ceeeE-eccCcc--ceEEEEEcC---CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEE
Q 016224          304 --QCIQT-LTEHTS--VVMSLLCWD---QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLC  375 (393)
Q Consensus       304 --~~~~~-~~~~~~--~v~~l~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s  375 (393)
                        ..+.. +++|..  .|..+.|.|   .|+++||.-|.|.||+-.+++.+..+.+..+  -|.++.-+|..+   +||+
T Consensus       379 ~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~--VVNCLEpHP~~P---vLAs  453 (559)
T KOG1334|consen  379 REQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH--VVNCLEPHPHLP---VLAS  453 (559)
T ss_pred             hhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc--eEeccCCCCCCc---hhhc
Confidence              22333 777754  578888885   5999999999999999988877766665544  488888888877   9999


Q ss_pred             EeCCCeEEEEeCC
Q 016224          376 SCNDNSVRFYDLP  388 (393)
Q Consensus       376 ~s~dg~I~iwd~~  388 (393)
                      ++-|..|+||-..
T Consensus       454 SGid~DVKIWTP~  466 (559)
T KOG1334|consen  454 SGIDHDVKIWTPL  466 (559)
T ss_pred             cCCccceeeecCC
Confidence            9999999999763

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.54  E-value=4.7e-14  Score=125.67  Aligned_cols=256  Identities=16%  Similarity=0.219  Sum_probs=194.7

Q ss_pred             EEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 016224          113 LCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL  190 (393)
Q Consensus       113 ~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~  190 (393)
                      +-+.|..+  .++.|+.-|.|-.+|..++ ++..++. -...|.++.|-.+.+++|++- ...+.|||- .|..++.+.-
T Consensus       133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~-~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHClk~  208 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTK-KLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCLKR  208 (545)
T ss_pred             eeeeecCCccEEEecCCccceeeeecccc-eeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEeehhh
Confidence            44556544  5778999999999999998 7877776 456799999988888887765 458999995 4666666655


Q ss_pred             CCceEE--EEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCcccc
Q 016224          191 GGEVGC--MISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFE  264 (393)
Q Consensus       191 ~~~~~~--~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~  264 (393)
                      ...+..  +.+..-+|+++ ..|.++.-|+.+++.+ .+....+.+..|.-+|-  .+-+|...|+|.+|.....    +
T Consensus       209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk----e  284 (545)
T KOG1272|consen  209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK----E  284 (545)
T ss_pred             cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc----c
Confidence            544433  34555555554 6679999999999988 66777788888888886  8889999999999988776    7


Q ss_pred             CceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcC-
Q 016224          265 PAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFAT-  341 (393)
Q Consensus       265 ~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~-  341 (393)
                      ++..+..|.++|.+++++  |.+++|.+.|..++|||+++...+.++.. ..+...++++.+-+++.+....|.||.-. 
T Consensus       285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d~~  363 (545)
T KOG1272|consen  285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWKDAL  363 (545)
T ss_pred             hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccceeeecCCeeeeehhhh
Confidence            778888899999999997  67999999999999999999887777765 45677888888878888888899999532 


Q ss_pred             C--CcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCC
Q 016224          342 D--SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN  380 (393)
Q Consensus       342 ~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg  380 (393)
                      .  +..-.....|.-...|..+.|.|..+   +|-.|-.-|
T Consensus       364 ~~s~~~~~pYm~H~~~~~V~~l~FcP~ED---vLGIGH~~G  401 (545)
T KOG1272|consen  364 KGSGHGETPYMNHRCGGPVEDLRFCPYED---VLGIGHAGG  401 (545)
T ss_pred             cCCCCCCcchhhhccCcccccceeccHHH---eeeccccCC
Confidence            2  12223344455556788888888755   454444333

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.54  E-value=1.2e-13  Score=114.70  Aligned_cols=232  Identities=18%  Similarity=0.225  Sum_probs=151.3

Q ss_pred             cceeecceEEeeEec-CcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCC-----C----CEEEEEeCCC-c
Q 016224          105 RAVIKTDILCRNWVQ-GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG-----S----DKLYSGSKDE-T  173 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~-~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~-----~----~~l~s~s~dg-~  173 (393)
                      +..+...|+.++..+ +.+.+-+.|..+.+|++..+ ..+   ..|+-.+.++-|.+.     +    +.++.=+... .
T Consensus        52 r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s-~~i---~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde  127 (323)
T KOG0322|consen   52 RLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYS-AFI---SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE  127 (323)
T ss_pred             hhhccceeeceeecCCcchhhcCCCceEEEEEccCc-ceE---EEeeeeccccccccceeccCCCcchhheecCCcccch
Confidence            345566888888877 56778999999999998865 222   234444555555332     1    1111111100 0


Q ss_pred             EEEEECCCCeEEEEEecC-----CceEEEE---eCC--CEEEEE-cCCeEEEEECCCCcee-----------eecCCCCc
Q 016224          174 VRVWDCASGQCAGVINLG-----GEVGCMI---SEG--PWIFIG-VTNFVKAWNTQTNTDL-----------SLSGPVGQ  231 (393)
Q Consensus       174 v~iwd~~~~~~~~~~~~~-----~~~~~~~---~~~--~~l~~~-~~~~i~v~d~~~~~~~-----------~~~~~~~~  231 (393)
                      +.+=|......+......     +.+.+..   .++  -++++| .++.+.+||+.++..+           ....|..+
T Consensus       128 ~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qp  207 (323)
T KOG0322|consen  128 THKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQP  207 (323)
T ss_pred             hhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCc
Confidence            111121111111111110     1122222   122  244566 7789999999997322           34568899


Q ss_pred             EEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCcee--ecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceee
Q 016224          232 VYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAAS--LKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQ  307 (393)
Q Consensus       232 v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~  307 (393)
                      |.++.+.+.  .=++|+.+..+..|+++...........  ++.....-..|-.+++.+|+++.|+.||||..++.+++.
T Consensus       208 vlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA  287 (323)
T KOG0322|consen  208 VLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA  287 (323)
T ss_pred             ceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchh
Confidence            999999865  6778888899999998876443232222  222222334566788899999999999999999999999


Q ss_pred             EeccCccceEEEEEcC--CEEEEEeCCCcEEEEEc
Q 016224          308 TLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFA  340 (393)
Q Consensus       308 ~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~  340 (393)
                      .++.|.+.|++++|++  ..+++++.|++|.+|++
T Consensus       288 VLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  288 VLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            9999999999999994  58999999999999986

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.54  E-value=5.7e-13  Score=129.59  Aligned_cols=266  Identities=18%  Similarity=0.235  Sum_probs=176.8

Q ss_pred             ecceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEe------cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224          109 KTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQL------EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       109 ~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l------~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      -.+..|.++.. ..+.++..-.|.+||+..+ .++..+      ..|...  ... .-.+.+++++..-+.+..=+....
T Consensus         7 ~~~l~~~~~~~-~~llag~gp~i~~yd~~s~-~li~~~~~~~~~~~H~~e--~~~-~l~~~~~v~~~~~~~v~~~~~~~~   81 (967)
T KOG0974|consen    7 LGPLNLPQLVS-DYLLAGSGPEILVYDLSSG-CLIRHLIQSKILEVHRGE--GKV-KLLSGKIVTCAKSDEVYVKEASNQ   81 (967)
T ss_pred             cccccchhhcc-ceeeecCCCceEEeeCCch-hHhhhhhhhccccccccc--ccc-eeccceEEEEEeecceeecchhhh
Confidence            34667777766 5556666778999999877 443332      234100  000 012334555554433332222111


Q ss_pred             eEEEEEecCCceEEEEe-CCCEEEEEcCCeEEEEECCCCceeeecCCCCcEE--EE---EEeCC--EEEEEeCCCcEEEE
Q 016224          183 QCAGVINLGGEVGCMIS-EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVY--AM---AVGND--LLFAGTQDGAILAW  254 (393)
Q Consensus       183 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~--~l---~~~~~--~l~~~~~dg~I~vw  254 (393)
                      ........-.. ..+.- +.+..+...++.+.+||...........+.....  ++   -++++  ++++|+.-+.|.+|
T Consensus        82 ~~~~~s~wi~g-~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW  160 (967)
T KOG0974|consen   82 IIERFSDWIFG-AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVW  160 (967)
T ss_pred             hhhhccccccc-cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEE
Confidence            10000000000 11222 3444455688899999999888775444444332  22   22444  89999999999999


Q ss_pred             EeccCCccccCceeecCceeeEEEEEE--cCCEEEEecCCCcEEEeeCCCcceee-EeccCccceEEEEEcCCEEEEEeC
Q 016224          255 KFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQ-TLTEHTSVVMSLLCWDQFLLSCSL  331 (393)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~~l~s~s~  331 (393)
                      +....    .....+.+|.+.+.++.+  ++.++++.+.|.++++|++.+.+... +.-+|...+..+.+.+..+++++.
T Consensus       161 ~~~~d----n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~ge  236 (967)
T KOG0974|consen  161 KPHED----NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGE  236 (967)
T ss_pred             ecccc----CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEecc
Confidence            99843    222368899999999998  68899999999999999999988776 667899999999999889999999


Q ss_pred             CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          332 DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       332 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      |-+.++|+.. ...+..+..|.. ..+..+...+...   .++|++.|+.+++|++..
T Consensus       237 dctcrvW~~~-~~~l~~y~~h~g-~~iw~~~~~~~~~---~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  237 DCTCRVWGVN-GTQLEVYDEHSG-KGIWKIAVPIGVI---IKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ceEEEEEecc-cceehhhhhhhh-cceeEEEEcCCce---EEEeeccCcchhhhhhhc
Confidence            9999999763 455555555443 3577777766555   899999999999999854

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=8.2e-14  Score=126.99  Aligned_cols=205  Identities=22%  Similarity=0.300  Sum_probs=147.4

Q ss_pred             cceeecceEEeeEecC--cEEEecCCCeEEEEECC------CC---cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCc
Q 016224          105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVG------DG---FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET  173 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~------~~---~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~  173 (393)
                      ...|+.+|.|+....+  .+++|+.||+|+.|++.      +.   ..+...+.||++.|+.+++|+....|++++.||+
T Consensus       340 fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgT  419 (577)
T KOG0642|consen  340 FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGT  419 (577)
T ss_pred             EecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCce
Confidence            4468899999999865  67889999999999654      11   2455688999999999999999999999999999


Q ss_pred             EEEEECCCCeEEEEEecC---CceEEEEe-CC--CEEEEE-cCCeEEEEECCCCceeeecC--------CCCcEEEEEEe
Q 016224          174 VRVWDCASGQCAGVINLG---GEVGCMIS-EG--PWIFIG-VTNFVKAWNTQTNTDLSLSG--------PVGQVYAMAVG  238 (393)
Q Consensus       174 v~iwd~~~~~~~~~~~~~---~~~~~~~~-~~--~~l~~~-~~~~i~v~d~~~~~~~~~~~--------~~~~v~~l~~~  238 (393)
                      |++|+...... .++...   .....+.. ..  .+.+++ .-+.-.++++.....+.+..        ....+.-+..+
T Consensus       420 vr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~  498 (577)
T KOG0642|consen  420 VRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSH  498 (577)
T ss_pred             EEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEec
Confidence            99999876655 333322   11122221 11  112221 22333344444433332111        12345666677


Q ss_pred             CC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC--CEEEEecCCCcEEEeeCCCcceeeEeccCcc
Q 016224          239 ND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQCIQTLTEHTS  314 (393)
Q Consensus       239 ~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  314 (393)
                      +.  +.+++..|+.|+++|..++    .++.....|...++++++++  -+|++++.|+.+++|.+....++.....|..
T Consensus       499 ~~~~~~~~~hed~~Ir~~dn~~~----~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~  574 (577)
T KOG0642|consen  499 PTADITFTAHEDRSIRFFDNKTG----KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK  574 (577)
T ss_pred             CCCCeeEecccCCceeccccccc----ccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccccc
Confidence            76  9999999999999999887    77788888999999999874  4899999999999999988888877766653

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=1.1e-13  Score=124.08  Aligned_cols=249  Identities=17%  Similarity=0.202  Sum_probs=177.7

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEE----EE---eCCCEEEEEcCCeEE
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC----MI---SEGPWIFIGVTNFVK  213 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~----~~---~~~~~l~~~~~~~i~  213 (393)
                      .+...|..|.+.|..|.|...|..|+||+.|..|.+||...++....+..+.....    +.   .+..++.++.|+.++
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            55667899999999999999999999999999999999998887777654422111    22   244555567999998


Q ss_pred             EEECCCCcee----eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCce---eeEEEEEEc-
Q 016224          214 AWNTQTNTDL----SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHS---LAVVSLVVG-  282 (393)
Q Consensus       214 v~d~~~~~~~----~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~---~~v~~l~~~-  282 (393)
                      +-.+.....+    .+..|.+.|.-++..|+   .|.+++.|+.+.-+|++......... .-..+.   ....+++.+ 
T Consensus       213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~v~L~~Ia~~P  291 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKERVGLYTIAVDP  291 (559)
T ss_pred             eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccceeeeeEecCC
Confidence            8776544332    56779999999998766   89999999999999999875432222 222222   245666765 


Q ss_pred             --CCEEEEecCCCcEEEeeCCCcce------eeEecc------CccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCc--
Q 016224          283 --ANKLYSGSMDNSIRVWNLETLQC------IQTLTE------HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSG--  344 (393)
Q Consensus       283 --~~~l~sg~~dg~i~iwd~~~~~~------~~~~~~------~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~--  344 (393)
                        .+.+++++.|-.+++||.+....      +..+..      ....|++++++  +.-|+++-.|-.|+++...-+.  
T Consensus       292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~  371 (559)
T KOG1334|consen  292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS  371 (559)
T ss_pred             CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence              35899999999999999875322      233322      23467999998  4567777778889999543211  


Q ss_pred             ----------c-eEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          345 ----------N-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       345 ----------~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                                . ...+.+|.....|-.+.|.  ++...|+++|+.=|.|.||+-.++++
T Consensus       372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFf--GPrsEyVvSGSDCGhIFiW~K~t~ei  428 (559)
T KOG1334|consen  372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFF--GPRSEYVVSGSDCGHIFIWDKKTGEI  428 (559)
T ss_pred             CCCCCcchhhccchhhcccccccccceeeec--cCccceEEecCccceEEEEecchhHH
Confidence                      1 1224556655566666654  33444999999999999999888765

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=2e-13  Score=120.51  Aligned_cols=192  Identities=19%  Similarity=0.185  Sum_probs=134.9

Q ss_pred             EEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 016224          113 LCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL  190 (393)
Q Consensus       113 ~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~  190 (393)
                      .+++|+.+  .+.+|+.||++|||+..+. ..+.....|.+.|.+|.|+|||++|++.+.| ..+||+++++..+.....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc-hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            66777765  4557999999999998887 6777788899999999999999999999999 999999999965544321


Q ss_pred             CCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC------EEEE-EeCCCcEEEEEeccCCcc-
Q 016224          191 GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND------LLFA-GTQDGAILAWKFNVTTNC-  262 (393)
Q Consensus       191 ~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~------~l~~-~~~dg~I~vwd~~~~~~~-  262 (393)
                      .                                   ........+.|+.+      ++++ ....+.|..||+...... 
T Consensus       226 ~-----------------------------------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~  270 (398)
T KOG0771|consen  226 F-----------------------------------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN  270 (398)
T ss_pred             c-----------------------------------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc
Confidence            1                                   11112223333222      2222 233445666655443221 


Q ss_pred             -ccCceeecCceeeEEEEEE--cCCEEEEecCCCcEEEeeCCCcceeeEec-cCccceEEEEEcC--CEEEEEeCCCcEE
Q 016224          263 -FEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLT-EHTSVVMSLLCWD--QFLLSCSLDKTIK  336 (393)
Q Consensus       263 -~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~--~~l~s~s~dg~i~  336 (393)
                       .+..+.... ...|.+++.  +|++++.|+.||.|-|++..+.+.++-++ .|...|+.+.|++  +++++.+.|.++.
T Consensus       271 ~l~~~~~~~~-~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~  349 (398)
T KOG0771|consen  271 FLRLRKKIKR-FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAA  349 (398)
T ss_pred             ccchhhhhhc-cCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCcee
Confidence             111111222 234555554  68899999999999999999988877765 7999999999994  5889999999888


Q ss_pred             EEEcCC
Q 016224          337 VWFATD  342 (393)
Q Consensus       337 iwd~~~  342 (393)
                      |..+.-
T Consensus       350 v~~l~v  355 (398)
T KOG0771|consen  350 VTKLAV  355 (398)
T ss_pred             EEEEee
Confidence            887653

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=2e-12  Score=118.29  Aligned_cols=235  Identities=17%  Similarity=0.240  Sum_probs=168.4

Q ss_pred             CCcCCEEEEEecCCCCEEE-EEeCCCcEEEEECCCCeEEEEEecCCceEEE-----------------------------
Q 016224          148 GHQKVVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGVINLGGEVGCM-----------------------------  197 (393)
Q Consensus       148 ~h~~~I~~i~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~-----------------------------  197 (393)
                      .|...-+.|..+|||+|++ ||-.--.|++||+..-.....-.....+..+                             
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            4778889999999999875 5666789999999765433322222111110                             


Q ss_pred             --------------EeCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCC
Q 016224          198 --------------ISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT  260 (393)
Q Consensus       198 --------------~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~  260 (393)
                                    .+...++++|....|+-++++.|+.+ .+....+.++++..++.  +|++|+.+|.|..||.+...
T Consensus       129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks  208 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS  208 (703)
T ss_pred             eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence                          01345667778889999999999988 55555688999999886  89999999999999998864


Q ss_pred             ccccC--ceeecCce-----eeEEEEEEcC--CEEEEecCCCcEEEeeCCCcceeeEec-cCccceEEEEEcC----CEE
Q 016224          261 NCFEP--AASLKGHS-----LAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQCIQTLT-EHTSVVMSLLCWD----QFL  326 (393)
Q Consensus       261 ~~~~~--~~~~~~~~-----~~v~~l~~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~----~~l  326 (393)
                      ....+  ......|.     ..|+++.|++  -.+++|+.+|.|.|||+++.+++..-. +..-+|..+.|..    ..+
T Consensus       209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v  288 (703)
T KOG2321|consen  209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKV  288 (703)
T ss_pred             hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceE
Confidence            32111  11222233     3489999975  379999999999999999988765443 2345778888852    334


Q ss_pred             EEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          327 LSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       327 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      ++ .....++|||-.+++....+...   ..+..+|+.|++.   +++++-.+..+..|=+++
T Consensus       289 ~S-~Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p~sG---m~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  289 VS-MDKRILKIWDECTGKPMASIEPT---SDLNDFCFVPGSG---MFFTANESSKMHTYYIPS  344 (703)
T ss_pred             Ee-cchHHhhhcccccCCceeecccc---CCcCceeeecCCc---eEEEecCCCcceeEEccc
Confidence            43 34568999999888876665443   2378899999876   899999988888776664

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.52  E-value=4.2e-11  Score=112.32  Aligned_cols=265  Identities=14%  Similarity=0.138  Sum_probs=173.3

Q ss_pred             EecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEE
Q 016224          117 WVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC  196 (393)
Q Consensus       117 ~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~  196 (393)
                      ...+.+++++.++.|+.+|..++ +.+...+...........  ++..++.++.++.|..+|..+|+.+........+..
T Consensus        63 v~~~~v~v~~~~g~v~a~d~~tG-~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~  139 (377)
T TIGR03300        63 VAGGKVYAADADGTVVALDAETG-KRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLS  139 (377)
T ss_pred             EECCEEEEECCCCeEEEEEccCC-cEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeec
Confidence            34667888999999999999999 666555544322222222  467888899999999999999999888776654332


Q ss_pred             --EEeCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcE-----EEEEEeCCEEEEEeCCCcEEEEEeccCCccccCcee
Q 016224          197 --MISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQV-----YAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAAS  268 (393)
Q Consensus       197 --~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v-----~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~  268 (393)
                        ...++.+++...++.+..+|.++++.+ ........+     ....+..+.++++..++.+..+|.+++...++....
T Consensus       140 ~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~  219 (377)
T TIGR03300       140 PPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVA  219 (377)
T ss_pred             CCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccc
Confidence              223455555557889999999998876 322221111     112233457888888999999999887543321110


Q ss_pred             ec-Cce-----eeE-EEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcC
Q 016224          269 LK-GHS-----LAV-VSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFAT  341 (393)
Q Consensus       269 ~~-~~~-----~~v-~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~  341 (393)
                      .. +..     ..+ ......++.+++++.+|.++.||.++++.+.....  .........+..++.++.||.|..+|..
T Consensus       220 ~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~~~~~~vyv~~~~G~l~~~d~~  297 (377)
T TIGR03300       220 LPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA--SSYQGPAVDDNRLYVTDADGVVVALDRR  297 (377)
T ss_pred             cCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc--CCccCceEeCCEEEEECCCCeEEEEECC
Confidence            00 000     000 11223467888888999999999999988776652  1223444568888889999999999998


Q ss_pred             CCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          342 DSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       342 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      +++.+......... .......  .+.   .|++++.+|.|+++|..+|++
T Consensus       298 tG~~~W~~~~~~~~-~~ssp~i--~g~---~l~~~~~~G~l~~~d~~tG~~  342 (377)
T TIGR03300       298 SGSELWKNDELKYR-QLTAPAV--VGG---YLVVGDFEGYLHWLSREDGSF  342 (377)
T ss_pred             CCcEEEccccccCC-ccccCEE--ECC---EEEEEeCCCEEEEEECCCCCE
Confidence            87655433221111 0111111  122   788999999999999998875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.50  E-value=1.3e-12  Score=121.47  Aligned_cols=229  Identities=12%  Similarity=0.200  Sum_probs=167.9

Q ss_pred             ccceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 016224          104 NRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (393)
Q Consensus       104 ~~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~  181 (393)
                      .--.|+..|+|++|+.++  +.+|+.|+.|.+|+..-. -. ..+ .|.+.|.||.|+|-...|+|++-. ..-+|..+.
T Consensus        48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G~-LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~q  123 (1081)
T KOG1538|consen   48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-GI-LKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQ  123 (1081)
T ss_pred             ccccccceEEEEEEccCCceeccCCCceeEEEeccccc-ce-eee-ccCCeeeEeecCchHHHhhhcchh-hccccChhh
Confidence            344578899999999774  446999999999986532 12 222 499999999999999999999875 567888764


Q ss_pred             CeEEEEEecCCceE--EEEeCCCEEEEE-cCCeEEEEECCCCceeee---cCCCCcEEEEEEeCC-------EEEEEeCC
Q 016224          182 GQCAGVINLGGEVG--CMISEGPWIFIG-VTNFVKAWNTQTNTDLSL---SGPVGQVYAMAVGND-------LLFAGTQD  248 (393)
Q Consensus       182 ~~~~~~~~~~~~~~--~~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~---~~~~~~v~~l~~~~~-------~l~~~~~d  248 (393)
                      .... ..+....+.  ++..+|.+++.| .+|+|.+-+....+...+   .+..++|.+++|+|.       .+++....
T Consensus       124 K~V~-K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~  202 (1081)
T KOG1538|consen  124 KSVS-KHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWG  202 (1081)
T ss_pred             hhHH-hhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecc
Confidence            3322 222222222  234689999998 888999987666555544   347889999999875       88999999


Q ss_pred             CcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEE
Q 016224          249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFL  326 (393)
Q Consensus       249 g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l  326 (393)
                      .++.++.+.......+....   ....+.+...+|.+++.|+.|+.+.+|- +.|-.+.++......|+.+...  ++++
T Consensus       203 qTLSFy~LsG~~Igk~r~L~---FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v  278 (1081)
T KOG1538|consen  203 QTLSFYQLSGKQIGKDRALN---FDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYV  278 (1081)
T ss_pred             ceeEEEEecceeecccccCC---CCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceE
Confidence            99999988754221111111   2222334445789999999999999997 5577778887788889888776  6799


Q ss_pred             EEEeCCCcEEEEEcC
Q 016224          327 LSCSLDKTIKVWFAT  341 (393)
Q Consensus       327 ~s~s~dg~i~iwd~~  341 (393)
                      +.|+.||+|-.|++.
T Consensus       279 ~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  279 VVGCQDGTIACYNLI  293 (1081)
T ss_pred             EEEEccCeeehhhhH
Confidence            999999999999764

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.48  E-value=8.4e-11  Score=108.24  Aligned_cols=229  Identities=10%  Similarity=0.075  Sum_probs=139.9

Q ss_pred             ceEEeeEecCc--EEE-ecCCCeEEEEECC-CC-cEEEEEecCCcCCEEEEEecCCCCEEEEEeC-CCcEEEEECCCC--
Q 016224          111 DILCRNWVQGN--CMY-GEKCKFLHSWTVG-DG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCASG--  182 (393)
Q Consensus       111 ~i~c~~~~~~~--~~~-g~~dg~i~vwd~~-~~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~-dg~v~iwd~~~~--  182 (393)
                      ....+.+++++  +++ +..++.|.+|+++ ++ .+.+.... .......|+|+|++++|++++. ++.|.+|++++.  
T Consensus        36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~  114 (330)
T PRK11028         36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI  114 (330)
T ss_pred             CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC
Confidence            34566777663  333 3467899999986 33 12233332 3345678999999999988875 889999999742  


Q ss_pred             --eEEEEEecCC--ceEEEEeCCCEEEEE--cCCeEEEEECCCCceee-------ecCCCCcEEEEEEeCC--EEEEEeC
Q 016224          183 --QCAGVINLGG--EVGCMISEGPWIFIG--VTNFVKAWNTQTNTDLS-------LSGPVGQVYAMAVGND--LLFAGTQ  247 (393)
Q Consensus       183 --~~~~~~~~~~--~~~~~~~~~~~l~~~--~~~~i~v~d~~~~~~~~-------~~~~~~~v~~l~~~~~--~l~~~~~  247 (393)
                        +.+..+....  ....+.++++++++.  .++.|.+||+.+...+.       ..........+.|+|+  +++++..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~  194 (330)
T PRK11028        115 PVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE  194 (330)
T ss_pred             CCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec
Confidence              2233332221  223355688888665  56799999998643221       1112344678899998  6666665


Q ss_pred             -CCcEEEEEeccCCccccCceeecCc------eeeEEEE--EEcCCEEEEec-CCCcEEEeeCCCcc----eeeEeccCc
Q 016224          248 -DGAILAWKFNVTTNCFEPAASLKGH------SLAVVSL--VVGANKLYSGS-MDNSIRVWNLETLQ----CIQTLTEHT  313 (393)
Q Consensus       248 -dg~I~vwd~~~~~~~~~~~~~~~~~------~~~v~~l--~~~~~~l~sg~-~dg~i~iwd~~~~~----~~~~~~~~~  313 (393)
                       ++.|.+|++.......+....+...      ......+  ..++++++++. .++.|.+|++....    .+..+... 
T Consensus       195 ~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-  273 (330)
T PRK11028        195 LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-  273 (330)
T ss_pred             CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-
Confidence             8999999998532222222222211      1112234  45567888775 47899999986433    22222211 


Q ss_pred             cceEEEEEc--CCEEEEEeC-CCcEEEEEcC
Q 016224          314 SVVMSLLCW--DQFLLSCSL-DKTIKVWFAT  341 (393)
Q Consensus       314 ~~v~~l~~~--~~~l~s~s~-dg~i~iwd~~  341 (393)
                      .....+.++  +++|+++.. +++|.+|++.
T Consensus       274 ~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        274 TQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            122345555  778887765 8999999885

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.48  E-value=4.4e-13  Score=117.68  Aligned_cols=165  Identities=26%  Similarity=0.359  Sum_probs=132.0

Q ss_pred             cCCEEEEEecCCCC-EEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCC
Q 016224          150 QKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGP  228 (393)
Q Consensus       150 ~~~I~~i~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~  228 (393)
                      ..+|..+.|.+++. .|+||+.|..|+||.++.++.-..                     +..|..       .-.+..|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~---------------------~~~V~y-------~s~Ls~H   64 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG---------------------DMKVEY-------LSSLSRH   64 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC---------------------ceeEEE-------eecccCC
Confidence            46899999988766 999999999999999876542110                     000000       1156789


Q ss_pred             CCcEEEEEEeCC--EEEEEeCCCcEEEEEeccC------------CccccCceeecCceeeEEEEEEc--CCEEEEecCC
Q 016224          229 VGQVYAMAVGND--LLFAGTQDGAILAWKFNVT------------TNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMD  292 (393)
Q Consensus       229 ~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~------------~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~d  292 (393)
                      ...|+.+.|+|+  +|++|+.+|.|.+|.....            .+.+.....+.+|...+..++|.  ++++++++.|
T Consensus        65 ~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~d  144 (434)
T KOG1009|consen   65 TRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVD  144 (434)
T ss_pred             cceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeecc
Confidence            999999999998  9999999999999987621            11133445677899999999986  5689999999


Q ss_pred             CcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCC
Q 016224          293 NSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATD  342 (393)
Q Consensus       293 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~  342 (393)
                      ..+++||+..|+.+..+..|...+..++|+  ++++++-+.|...+.+.+..
T Consensus       145 ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  145 NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL  196 (434)
T ss_pred             ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeee
Confidence            999999999999999999999999999999  78999999998777776653

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=1.3e-12  Score=115.34  Aligned_cols=189  Identities=19%  Similarity=0.207  Sum_probs=130.4

Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEE
Q 016224          154 SGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVY  233 (393)
Q Consensus       154 ~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~  233 (393)
                      ..++|+.++..|++++.||++|||+......+.                                     ....|...|.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l-------------------------------------~e~~~~~eV~  190 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL-------------------------------------EEIAHHAEVK  190 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhh-------------------------------------hhHhhcCccc
Confidence            678999999999999999999999976554332                                     3457889999


Q ss_pred             EEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeec--CceeeEEEEEE--cC---C-EEE-EecCCCcEEEeeCCC
Q 016224          234 AMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK--GHSLAVVSLVV--GA---N-KLY-SGSMDNSIRVWNLET  302 (393)
Q Consensus       234 ~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~--~~~~~v~~l~~--~~---~-~l~-sg~~dg~i~iwd~~~  302 (393)
                      ++.|+||  +|++-+.| ..+||+.+++..    +....  ........+-|  ++   . +++ .....+.|+.||+..
T Consensus       191 DL~FS~dgk~lasig~d-~~~VW~~~~g~~----~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~  265 (398)
T KOG0771|consen  191 DLDFSPDGKFLASIGAD-SARVWSVNTGAA----LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISL  265 (398)
T ss_pred             cceeCCCCcEEEEecCC-ceEEEEeccCch----hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeee
Confidence            9999999  88888888 999999998732    11111  11111112222  22   2 222 233345666666543


Q ss_pred             cce-----eeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEE
Q 016224          303 LQC-----IQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLC  375 (393)
Q Consensus       303 ~~~-----~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s  375 (393)
                      ...     ..+.......|.+++.+  |++++.|+.||.|-|++..+.+.+.... +.+...|+.+.|+|+..   ++++
T Consensus       266 w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr---~~~s  341 (398)
T KOG0771|consen  266 WSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSR---YLAS  341 (398)
T ss_pred             eccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcC---cccc
Confidence            211     12222233467777777  8899999999999999998777665544 34445799999999877   7888


Q ss_pred             EeCCCeEEEEeCC
Q 016224          376 SCNDNSVRFYDLP  388 (393)
Q Consensus       376 ~s~dg~I~iwd~~  388 (393)
                      -+.|..+.|..+.
T Consensus       342 vSs~~~~~v~~l~  354 (398)
T KOG0771|consen  342 VSSDNEAAVTKLA  354 (398)
T ss_pred             cccCCceeEEEEe
Confidence            8888888887664

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.47  E-value=1e-10  Score=109.69  Aligned_cols=253  Identities=15%  Similarity=0.102  Sum_probs=164.4

Q ss_pred             ecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceE--
Q 016224          118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG--  195 (393)
Q Consensus       118 ~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~--  195 (393)
                      ..+.+++++.++.++.+|..++ +.+....... .+.+.-.. .+..++.++.+|.|..||.++|+.+..+.......  
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG-~~~W~~~~~~-~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~  180 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDG-KELWRAKLSS-EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL  180 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCC-cEeeeeccCc-eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence            3566778899999999999998 5655544322 22211111 34577778889999999999999888776544321  


Q ss_pred             -----EEEeCCCEEEEEcCCeEEEEECCCCcee-eec--CCCC---------cEEEEEEeCCEEEEEeCCCcEEEEEecc
Q 016224          196 -----CMISEGPWIFIGVTNFVKAWNTQTNTDL-SLS--GPVG---------QVYAMAVGNDLLFAGTQDGAILAWKFNV  258 (393)
Q Consensus       196 -----~~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~--~~~~---------~v~~l~~~~~~l~~~~~dg~I~vwd~~~  258 (393)
                           ....++.+++...++.+..+|.++++.+ ...  ....         ......+..+.+++++.+|.++.||..+
T Consensus       181 ~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t  260 (377)
T TIGR03300       181 RGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS  260 (377)
T ss_pred             cCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC
Confidence                 1223443333446789999999998765 211  0000         0112233456888889999999999988


Q ss_pred             CCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEecc-CccceEEEEEcCCEEEEEeCCCcEEE
Q 016224          259 TTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCWDQFLLSCSLDKTIKV  337 (393)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~l~s~s~dg~i~i  337 (393)
                      +...+..    ..  .........++.++.++.||.|..+|..+++.+..... ......+....+..|++++.+|.|.+
T Consensus       261 G~~~W~~----~~--~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~  334 (377)
T TIGR03300       261 GRVLWKR----DA--SSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHW  334 (377)
T ss_pred             CcEEEee----cc--CCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEE
Confidence            7433221    11  11223445678888899999999999999988766632 22223344446889999999999999


Q ss_pred             EEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEE
Q 016224          338 WFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFY  385 (393)
Q Consensus       338 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iw  385 (393)
                      +|..+++.+.....+...  +   ..+|--.++ .|+.++.||.|+.|
T Consensus       335 ~d~~tG~~~~~~~~~~~~--~---~~sp~~~~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       335 LSREDGSFVARLKTDGSG--I---ASPPVVVGD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             EECCCCCEEEEEEcCCCc--c---ccCCEEECC-EEEEEeCCceEEEe
Confidence            999888777665543322  1   111111122 58888899999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.46  E-value=1.2e-10  Score=107.60  Aligned_cols=259  Identities=15%  Similarity=0.196  Sum_probs=161.0

Q ss_pred             EecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEE--EeCC
Q 016224          124 YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEG  201 (393)
Q Consensus       124 ~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~  201 (393)
                      +-..++.|.+.|..+. +.+.++......-..+.|+||++++++++.||.|.++|+.+.+.+.++........+  .+++
T Consensus        11 ~~~~~~~v~viD~~t~-~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG   89 (369)
T PF02239_consen   11 VERGSGSVAVIDGATN-KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDG   89 (369)
T ss_dssp             EEGGGTEEEEEETTT--SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TT
T ss_pred             EecCCCEEEEEECCCC-eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCC
Confidence            4667899999999987 888888865554455789999999999999999999999999999999887766544  4699


Q ss_pred             CEEEEE--cCCeEEEEECCCCceee-ecC-------CCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCcee
Q 016224          202 PWIFIG--VTNFVKAWNTQTNTDLS-LSG-------PVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAAS  268 (393)
Q Consensus       202 ~~l~~~--~~~~i~v~d~~~~~~~~-~~~-------~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~  268 (393)
                      ++++++  ..+.+.++|.++.+.+. +..       ....+.++..++.   ++++--+.+.|.+.|......  .....
T Consensus        90 ~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~--~~~~~  167 (369)
T PF02239_consen   90 KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN--LKVTT  167 (369)
T ss_dssp             TEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC--EEEEE
T ss_pred             CEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc--cceee
Confidence            999987  67899999999988762 211       3456777777665   444445558888888766521  11111


Q ss_pred             ecCceeeEEEEEEc--CCEE-EEecCCCcEEEeeCCCcceeeEec----cCccceEEEE-------E----cCCEEEEEe
Q 016224          269 LKGHSLAVVSLVVG--ANKL-YSGSMDNSIRVWNLETLQCIQTLT----EHTSVVMSLL-------C----WDQFLLSCS  330 (393)
Q Consensus       269 ~~~~~~~v~~l~~~--~~~l-~sg~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~l~-------~----~~~~l~s~s  330 (393)
                      +. -........++  ++++ ++...+..|-++|.++++.+..+.    .|..+...+-       |    .+.+.++.-
T Consensus       168 i~-~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~i  246 (369)
T PF02239_consen  168 IK-VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLI  246 (369)
T ss_dssp             EE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEE
T ss_pred             ec-ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccc
Confidence            11 12223344554  5565 445667899999999988877653    2333333321       1    133333333


Q ss_pred             CCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEE----eCCCeEEEEeCCceee
Q 016224          331 LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS----CNDNSVRFYDLPSVII  392 (393)
Q Consensus       331 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~----s~dg~I~iwd~~s~~l  392 (393)
                      ....+.+||..+.+.+..+.....  + .-+..+|+++   ++...    ...++|.++|..+.++
T Consensus       247 g~~~v~v~d~~~wkvv~~I~~~G~--g-lFi~thP~s~---~vwvd~~~~~~~~~v~viD~~tl~~  306 (369)
T PF02239_consen  247 GTDPVSVHDDYAWKVVKTIPTQGG--G-LFIKTHPDSR---YVWVDTFLNPDADTVQVIDKKTLKV  306 (369)
T ss_dssp             E--TTT-STTTBTSEEEEEE-SSS--S---EE--TT-S---EEEEE-TT-SSHT-EEEEECCGTEE
T ss_pred             cCCccccchhhcCeEEEEEECCCC--c-ceeecCCCCc---cEEeeccCCCCCceEEEEECcCcce
Confidence            344666788877777777665433  2 5566677665   78777    5568999999998764

...

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.45  E-value=7.8e-12  Score=109.55  Aligned_cols=211  Identities=15%  Similarity=0.166  Sum_probs=152.5

Q ss_pred             eecceEEeeEecCcEEEecCCCeEEEEECCCC---cEEEEEecCCcCCEEEEEecCCC-CEEEEEeCC--CcEEEEECCC
Q 016224          108 IKTDILCRNWVQGNCMYGEKCKFLHSWTVGDG---FKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKD--ETVRVWDCAS  181 (393)
Q Consensus       108 ~~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~---~~~~~~l~~h~~~I~~i~~s~~~-~~l~s~s~d--g~v~iwd~~~  181 (393)
                      ...+|..+...++.++++..+|.+.+|..+.+   ...+..+..+ ..+..|.-++.. .++++|+..  ..++|||++.
T Consensus       104 ~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~  182 (412)
T KOG3881|consen  104 GTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ  182 (412)
T ss_pred             ccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeeccc
Confidence            44577888888899999999999999998843   1334445444 456666666644 455668988  8999999988


Q ss_pred             CeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeC---C-EEEEEeCCCcEEEEEec
Q 016224          182 GQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN---D-LLFAGTQDGAILAWKFN  257 (393)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~---~-~l~~~~~dg~I~vwd~~  257 (393)
                      .+.+..-+....  ..          .+=.|.+|                ++++.|-+   . .|++++.-+.|++||.+
T Consensus       183 ~~qiw~aKNvpn--D~----------L~LrVPvW----------------~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~  234 (412)
T KOG3881|consen  183 SKQIWSAKNVPN--DR----------LGLRVPVW----------------ITDIRFLEGSPNYKFATITRYHQVRLYDTR  234 (412)
T ss_pred             ceeeeeccCCCC--cc----------ccceeeee----------------eccceecCCCCCceEEEEecceeEEEecCc
Confidence            754433221100  00          00022233                34555533   2 89999999999999998


Q ss_pred             cCCccccCceeecCceeeEEEEE--EcCCEEEEecCCCcEEEeeCCCcceeeE-eccCccceEEEEEcCC--EEEEEeCC
Q 016224          258 VTTNCFEPAASLKGHSLAVVSLV--VGANKLYSGSMDNSIRVWNLETLQCIQT-LTEHTSVVMSLLCWDQ--FLLSCSLD  332 (393)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~l~--~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~--~l~s~s~d  332 (393)
                      .+.   +++..+.-...+++++.  ++++++++|..-+.+..||++.++.+.. +++-.+.+.+|..++.  ++++++.|
T Consensus       235 ~qR---RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLD  311 (412)
T KOG3881|consen  235 HQR---RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLD  311 (412)
T ss_pred             ccC---cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccc
Confidence            664   56666655555555554  5688999999999999999999998877 8899999999999955  99999999


Q ss_pred             CcEEEEEcCCCcceEEEE
Q 016224          333 KTIKVWFATDSGNLEVTY  350 (393)
Q Consensus       333 g~i~iwd~~~~~~~~~~~  350 (393)
                      ..|||+|+.+.+.+...+
T Consensus       312 RyvRIhD~ktrkll~kvY  329 (412)
T KOG3881|consen  312 RYVRIHDIKTRKLLHKVY  329 (412)
T ss_pred             eeEEEeecccchhhhhhh
Confidence            999999998865544433

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.44  E-value=2.6e-12  Score=116.62  Aligned_cols=229  Identities=17%  Similarity=0.176  Sum_probs=159.8

Q ss_pred             CCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce--EEEE----------eCCCEEEEEcCCeEEEE
Q 016224          148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV--GCMI----------SEGPWIFIGVTNFVKAW  215 (393)
Q Consensus       148 ~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~----------~~~~~l~~~~~~~i~v~  215 (393)
                      .|...|.++.|+.....+.+++.+..++-||+ +.........+...  ..+.          ....+++++.||.+.+.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~-~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDV-SRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecc-cchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            46777789999887776666655544444444 33333333322211  1111          13446777899999998


Q ss_pred             ECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC---EEEEec
Q 016224          216 NTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN---KLYSGS  290 (393)
Q Consensus       216 d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~l~sg~  290 (393)
                      +-...-......|.+.+.+-.|+++  -|+++++||.|++|.-..     -+...+.....+|.|++|.++   .+++.+
T Consensus        91 ~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-----MLRStl~Q~~~~v~c~~W~p~S~~vl~c~g  165 (737)
T KOG1524|consen   91 NKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-----MLRSTVVQNEESIRCARWAPNSNSIVFCQG  165 (737)
T ss_pred             cccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-----hHHHHHhhcCceeEEEEECCCCCceEEecC
Confidence            8776666688899999999999999  899999999999997443     233445556778999999754   455554


Q ss_pred             CCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCC
Q 016224          291 MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE  368 (393)
Q Consensus       291 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  368 (393)
                        +.+.|=-+.....+-.++.|.+-|.++.|+  .+.+++|++|-..+|||.. +..+.  ....++.++++++|.|+ .
T Consensus       166 --~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf--~S~~~ey~ITSva~npd-~  239 (737)
T KOG1524|consen  166 --GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLF--TSAAEEYAITSVAFNPE-K  239 (737)
T ss_pred             --CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-Ccccc--cCChhccceeeeeeccc-c
Confidence              456666666666778899999999999999  6799999999999999974 44333  33444556999999998 3


Q ss_pred             CCcEEEEEeCCCeEEEEeCCceee
Q 016224          369 GKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       369 ~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                         .++.+|. +++++=..+.|.+
T Consensus       240 ---~~~v~S~-nt~R~~~p~~GSi  259 (737)
T KOG1524|consen  240 ---DYLLWSY-NTARFSSPRVGSI  259 (737)
T ss_pred             ---ceeeeee-eeeeecCCCccce
Confidence               4666654 4666555554443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.41  E-value=2e-12  Score=117.42  Aligned_cols=136  Identities=18%  Similarity=0.335  Sum_probs=104.1

Q ss_pred             eeecceEEeeEecC---cEEEecCCCeEEEEECCC--------------C--cE-----------EEEEecCCcCCEEEE
Q 016224          107 VIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGD--------------G--FK-----------LLTQLEGHQKVVSGI  156 (393)
Q Consensus       107 ~~~~~i~c~~~~~~---~~~~g~~dg~i~vwd~~~--------------~--~~-----------~~~~l~~h~~~I~~i  156 (393)
                      ..+..++|+.|.++   .++++-.+|.+++||..-              +  +.           ++..+.--+..|...
T Consensus       217 i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f  296 (636)
T KOG2394|consen  217 INKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEF  296 (636)
T ss_pred             ccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccce
Confidence            34469999999854   345677899999997531              0  11           111122234578888


Q ss_pred             EecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEE
Q 016224          157 TLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMA  236 (393)
Q Consensus       157 ~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~  236 (393)
                      +|+|||++||+.+.||.++|+|..+.+.+..+                                     ...-+...|++
T Consensus       297 ~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m-------------------------------------kSYFGGLLCvc  339 (636)
T KOG2394|consen  297 AFSPDGKYLATVSQDGFLRIFDFDTQELLGVM-------------------------------------KSYFGGLLCVC  339 (636)
T ss_pred             eEcCCCceEEEEecCceEEEeeccHHHHHHHH-------------------------------------HhhccceEEEE
Confidence            99999999999999999999998876654322                                     33456788999


Q ss_pred             EeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC
Q 016224          237 VGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA  283 (393)
Q Consensus       237 ~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~  283 (393)
                      |+||  ++++|++|.-|.||.+...    +.+..-++|...|..++|++
T Consensus       340 WSPDGKyIvtGGEDDLVtVwSf~er----RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  340 WSPDGKYIVTGGEDDLVTVWSFEER----RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EcCCccEEEecCCcceEEEEEeccc----eEEEeccccccceeeEeecc
Confidence            9999  9999999999999999876    66778889999999999997

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.40  E-value=2.9e-11  Score=106.00  Aligned_cols=239  Identities=10%  Similarity=0.139  Sum_probs=163.1

Q ss_pred             CcCCEEEEEecCC--CCEEEEEeCCCcEEEEECCCCeEEEEEe------c-CCceEEEE-eCCCEEEEEcCCeEEEEECC
Q 016224          149 HQKVVSGITLPSG--SDKLYSGSKDETVRVWDCASGQCAGVIN------L-GGEVGCMI-SEGPWIFIGVTNFVKAWNTQ  218 (393)
Q Consensus       149 h~~~I~~i~~s~~--~~~l~s~s~dg~v~iwd~~~~~~~~~~~------~-~~~~~~~~-~~~~~l~~~~~~~i~v~d~~  218 (393)
                      ....|+.++|.-+  .+.|...+.|-.+..+.+....+.....      . ...+..+. .++.++++-.+|.+.+|..+
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k  133 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDK  133 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEecc
Confidence            3467788888544  3456666577788888877766555431      1 11222222 46777777799999999998


Q ss_pred             CCc-----eeeecCCCCcEEEEEEeC---CEEEEEeCC--CcEEEEEeccCCccccCceeec---Cc--eeeEEEEEEc-
Q 016224          219 TNT-----DLSLSGPVGQVYAMAVGN---DLLFAGTQD--GAILAWKFNVTTNCFEPAASLK---GH--SLAVVSLVVG-  282 (393)
Q Consensus       219 ~~~-----~~~~~~~~~~v~~l~~~~---~~l~~~~~d--g~I~vwd~~~~~~~~~~~~~~~---~~--~~~v~~l~~~-  282 (393)
                      .+.     ...+.. ...+..|.-++   .++++|+..  ..+.+||+.+..+.+.....-.   +-  ...++.+.|- 
T Consensus       134 ~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~  212 (412)
T KOG3881|consen  134 SGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE  212 (412)
T ss_pred             CCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence            443     333322 24455555444   388889999  8899999998754332211111   11  2233445552 


Q ss_pred             ---CCEEEEecCCCcEEEeeCCC-cceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCc
Q 016224          283 ---ANKLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH  356 (393)
Q Consensus       283 ---~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~  356 (393)
                         ...|++++.-+.+++||.+. .+++..|..-..+++++...  ++++++|..-+.+..||++.+..+..... .-..
T Consensus       213 g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k-g~tG  291 (412)
T KOG3881|consen  213 GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK-GITG  291 (412)
T ss_pred             CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccC-CccC
Confidence               34799999999999999986 46788888777788777655  78999999999999999988766555222 2223


Q ss_pred             cEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          357 GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       357 ~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      .+.++..+|..+   +|++++-|..|||+|+.+-++
T Consensus       292 sirsih~hp~~~---~las~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  292 SIRSIHCHPTHP---VLASCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             CcceEEEcCCCc---eEEeeccceeEEEeecccchh
Confidence            477787777666   999999999999999998544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.40  E-value=3.7e-09  Score=95.86  Aligned_cols=253  Identities=13%  Similarity=0.118  Sum_probs=163.3

Q ss_pred             CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC----------CCcEEEEECCCCeEEEEEecCCc-----
Q 016224          129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK----------DETVRVWDCASGQCAGVINLGGE-----  193 (393)
Q Consensus       129 g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~----------dg~v~iwd~~~~~~~~~~~~~~~-----  193 (393)
                      +.|.+.|..+. +.+.++..-..+-. + ++||++.|+.+..          +..|.+||..+.+.+..+..+..     
T Consensus        27 ~~v~ViD~~~~-~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAG-RVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCC-EEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence            89999999998 88888875444433 4 9999999988766          78999999999999999987654     


Q ss_pred             -----eEEEEeCCCEEEEEc---CCeEEEEECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccc-c
Q 016224          194 -----VGCMISEGPWIFIGV---TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCF-E  264 (393)
Q Consensus       194 -----~~~~~~~~~~l~~~~---~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~-~  264 (393)
                           ...+.+++++|++..   ++.|.+.|+.+++.+....-.+...-+..+++.+.+-+.||......+....... .
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~  183 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK  183 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence                 455668999999763   6799999999999884433344444444444444455566666655444332110 0


Q ss_pred             CceeecCc-----eeeEEEEEE-cCCEEEEecCCCcEEEeeCCC-----cceeeEeccC-------ccceEEEEEc--CC
Q 016224          265 PAASLKGH-----SLAVVSLVV-GANKLYSGSMDNSIRVWNLET-----LQCIQTLTEH-------TSVVMSLLCW--DQ  324 (393)
Q Consensus       265 ~~~~~~~~-----~~~v~~l~~-~~~~l~sg~~dg~i~iwd~~~-----~~~~~~~~~~-------~~~v~~l~~~--~~  324 (393)
                      ....+...     ..+  .+.. ++.+++.... |+|.+.|+..     .+.+..+...       .+...-++++  ++
T Consensus       184 ~~~vf~~~~~~v~~rP--~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~  260 (352)
T TIGR02658       184 PTEVFHPEDEYLINHP--AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD  260 (352)
T ss_pred             eeeeecCCccccccCC--ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence            00011110     111  2233 5666666666 9999999543     3333333211       1222336665  56


Q ss_pred             EEEEEe----------CCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe-CCCeEEEEeCCceee
Q 016224          325 FLLSCS----------LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDLPSVII  392 (393)
Q Consensus       325 ~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s-~dg~I~iwd~~s~~l  392 (393)
                      .+++..          ..+.|.++|..+.+.+..+...   ..+..+.++|+.  +++|++.. .++.|.++|+.++++
T Consensus       261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG---~~~~~iavS~Dg--kp~lyvtn~~s~~VsViD~~t~k~  334 (352)
T TIGR02658       261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG---HEIDSINVSQDA--KPLLYALSTGDKTLYIFDAETGKE  334 (352)
T ss_pred             EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC---CceeeEEECCCC--CeEEEEeCCCCCcEEEEECcCCeE
Confidence            666532          1257999999888777666543   247788888763  32555554 688999999999865

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.40  E-value=8.2e-12  Score=113.52  Aligned_cols=183  Identities=15%  Similarity=0.156  Sum_probs=126.7

Q ss_pred             cEEEecCCCeEEEEECCCCcEEEEEe----cCCcCCEEEEEecCC-CCEEEEEeCCCcEEEEECCCCeEEEEEecCCceE
Q 016224          121 NCMYGEKCKFLHSWTVGDGFKLLTQL----EGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG  195 (393)
Q Consensus       121 ~~~~g~~dg~i~vwd~~~~~~~~~~l----~~h~~~I~~i~~s~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~  195 (393)
                      .++.|-.-|.|.+.|.... +..+.+    .-.+..|++|.|-|. ...++.+-.+|.+.++|.+-.     .....+..
T Consensus       187 dllIGf~tGqvq~idp~~~-~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-----~~~t~p~~  260 (636)
T KOG2394|consen  187 DLLIGFTTGQVQLIDPINF-EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-----CGATAPSY  260 (636)
T ss_pred             ceEEeeccCceEEecchhh-HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-----ccCCCCcc
Confidence            3556777777877775432 221111    123588999999874 455666778999999987211     01111111


Q ss_pred             EEEeCCCEEEEE------cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCce
Q 016224          196 CMISEGPWIFIG------VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAA  267 (393)
Q Consensus       196 ~~~~~~~~l~~~------~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~  267 (393)
                      ....++..+...      .++-+.-|          .--.+.|..++|++|  +||+.+.||.++|||+.+.    +++.
T Consensus       261 ~~~k~~~~f~i~t~ksk~~rNPv~~w----------~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~----eLlg  326 (636)
T KOG2394|consen  261 QALKDGDQFAILTSKSKKTRNPVARW----------HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ----ELLG  326 (636)
T ss_pred             cccCCCCeeEEeeeeccccCCcccee----------EeccccccceeEcCCCceEEEEecCceEEEeeccHH----HHHH
Confidence            222233333322      11222222          223448889999999  9999999999999999886    5555


Q ss_pred             eecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcC
Q 016224          268 SLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD  323 (393)
Q Consensus       268 ~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~  323 (393)
                      .++..-+...|++|+  +++|++|++|-.|.||.+..++.+..=++|...|..++|++
T Consensus       327 ~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  327 VMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             HHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            556666777888885  67999999999999999999999999999999999999996

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.39  E-value=1.8e-10  Score=106.51  Aligned_cols=271  Identities=12%  Similarity=0.077  Sum_probs=162.7

Q ss_pred             eeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe-CCCcEEEEECCCCeEEEEEecC
Q 016224          115 RNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVWDCASGQCAGVINLG  191 (393)
Q Consensus       115 ~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~  191 (393)
                      +.+++++  +++.+.||.|.++|+.+. +.+++++.-. .-.++++++||++++++. .++.|.++|.++.+.++.+...
T Consensus        42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~-~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~  119 (369)
T PF02239_consen   42 LKFSPDGRYLYVANRDGTVSVIDLATG-KVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG  119 (369)
T ss_dssp             EE-TT-SSEEEEEETTSEEEEEETTSS-SEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred             EEecCCCCEEEEEcCCCeEEEEECCcc-cEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence            4567754  556788999999999998 8888887554 457899999999998775 6899999999999999888653


Q ss_pred             C--------ceEEEE--eCCC-EEEEEc-CCeEEEEECCCCcee--eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEE
Q 016224          192 G--------EVGCMI--SEGP-WIFIGV-TNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAW  254 (393)
Q Consensus       192 ~--------~~~~~~--~~~~-~l~~~~-~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vw  254 (393)
                      .        .+..+.  +... +++.-. .+.|.+.|....+.+  .............|+++   ++++...+..|-++
T Consensus       120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~vi  199 (369)
T PF02239_consen  120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVI  199 (369)
T ss_dssp             EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred             cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEE
Confidence            2        223332  4555 444444 468888888776543  34445567788899988   44556677889999


Q ss_pred             EeccCCccccCceeecCceeeEE-----------EEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc-
Q 016224          255 KFNVTTNCFEPAASLKGHSLAVV-----------SLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-  322 (393)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~~~v~-----------~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-  322 (393)
                      |..+.............|.....           ...-.+...++.-....+.+||..+.+.++++...... .-+..+ 
T Consensus       200 D~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP  278 (369)
T PF02239_consen  200 DTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP  278 (369)
T ss_dssp             ETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T
T ss_pred             eeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC
Confidence            98775321110000112332222           22222333333333456778999999999999876666 444444 


Q ss_pred             -CCEEEEE----eCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe-C-CCeEEEEeCCceee
Q 016224          323 -DQFLLSC----SLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-N-DNSVRFYDLPSVII  392 (393)
Q Consensus       323 -~~~l~s~----s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s-~-dg~I~iwd~~s~~l  392 (393)
                       ++++.+.    ...++|.++|.++.+....+... ....+..+.|++++.   .+..+. . ++.|.+||..+.++
T Consensus       279 ~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~-~~~~~~h~ef~~dG~---~v~vS~~~~~~~i~v~D~~Tl~~  351 (369)
T PF02239_consen  279 DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPG-PGKRVVHMEFNPDGK---EVWVSVWDGNGAIVVYDAKTLKE  351 (369)
T ss_dssp             T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHH-HT--EEEEEE-TTSS---EEEEEEE--TTEEEEEETTTTEE
T ss_pred             CCccEEeeccCCCCCceEEEEECcCcceeEEEecc-CCCcEeccEECCCCC---EEEEEEecCCCEEEEEECCCcEE
Confidence             6688877    44589999999877444333222 223488888988765   444433 3 33799999999875

...

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=7.5e-10  Score=105.25  Aligned_cols=225  Identities=10%  Similarity=-0.029  Sum_probs=139.4

Q ss_pred             CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC---CCcEEEEECCCCeEEEEEecCC--ceEEEEeCCCE
Q 016224          129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK---DETVRVWDCASGQCAGVINLGG--EVGCMISEGPW  203 (393)
Q Consensus       129 g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~  203 (393)
                      ..|.+||.+.. .. +.+..+...+...+|+|||+.|+..+.   +..|.+|++.+++.........  ....+.++++.
T Consensus       179 ~~l~~~d~dg~-~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~  256 (429)
T PRK03629        179 YELRVSDYDGY-NQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSK  256 (429)
T ss_pred             eeEEEEcCCCC-CC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCE
Confidence            37888988754 22 334456778999999999999987643   4579999999886544433322  23456688987


Q ss_pred             EEEE--cCC--eEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEe-CCCcEEEE--EeccCCccccCceeecCcee
Q 016224          204 IFIG--VTN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT-QDGAILAW--KFNVTTNCFEPAASLKGHSL  274 (393)
Q Consensus       204 l~~~--~~~--~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~-~dg~I~vw--d~~~~~~~~~~~~~~~~~~~  274 (393)
                      |+..  .++  .|.+||+.+++...+..+...+....|+|+  .|+..+ .++...+|  |+..+.     ...+..+..
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~-----~~~lt~~~~  331 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA-----PQRITWEGS  331 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC-----eEEeecCCC
Confidence            7754  333  699999999887777666667888999998  555444 44555555  444332     112221222


Q ss_pred             eE--EEEEEcCCEEEEecCC---CcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCc---EEEEEcCCCc
Q 016224          275 AV--VSLVVGANKLYSGSMD---NSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKT---IKVWFATDSG  344 (393)
Q Consensus       275 ~v--~~l~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~---i~iwd~~~~~  344 (393)
                      ..  ..++.++++|+..+.+   ..|.+||+.+++.. .+... .......|+  +++|+..+.++.   +.++++ +++
T Consensus       332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~  408 (429)
T PRK03629        332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGR  408 (429)
T ss_pred             CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCC
Confidence            22  3344567777665433   35888999887643 33321 112234454  778888887764   667776 344


Q ss_pred             ceEEEEeecCCccEEEEEeee
Q 016224          345 NLEVTYTHNEEHGVLALCGMP  365 (393)
Q Consensus       345 ~~~~~~~~~~~~~v~~~~~~~  365 (393)
                      ....+..+..  .+...+|+|
T Consensus       409 ~~~~l~~~~~--~~~~p~Wsp  427 (429)
T PRK03629        409 FKARLPATDG--QVKFPAWSP  427 (429)
T ss_pred             CeEECccCCC--CcCCcccCC
Confidence            4454544333  355666665

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.29  E-value=4.8e-09  Score=90.37  Aligned_cols=262  Identities=13%  Similarity=0.188  Sum_probs=164.4

Q ss_pred             ceEEeeEecCcEE---EecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCC-EEEEEeCCCcEEEEECCCCeEEE
Q 016224          111 DILCRNWVQGNCM---YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQCAG  186 (393)
Q Consensus       111 ~i~c~~~~~~~~~---~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~  186 (393)
                      .|.-+.|..+.+.   ....++.|.+|++.+. +-...++....++.+++|||||+ +|.+...|-.|.||.+.+.+...
T Consensus        50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~  128 (447)
T KOG4497|consen   50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL  128 (447)
T ss_pred             HhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence            5566778877544   4778999999999987 77778888999999999999995 55566779999999998876554


Q ss_pred             EEecCC--ceEEEEeCCCEEEEE-------------------------------------cCCeEEEEECCCCceeeecC
Q 016224          187 VINLGG--EVGCMISEGPWIFIG-------------------------------------VTNFVKAWNTQTNTDLSLSG  227 (393)
Q Consensus       187 ~~~~~~--~~~~~~~~~~~l~~~-------------------------------------~~~~i~v~d~~~~~~~~~~~  227 (393)
                      .-....  ....+.+++++.+..                                     .++.+.+||.--.-.+-...
T Consensus       129 ~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe  208 (447)
T KOG4497|consen  129 LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE  208 (447)
T ss_pred             ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee
Confidence            332222  223333454444332                                     12244455543322222223


Q ss_pred             CCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccC---------------C------c-----------------------
Q 016224          228 PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT---------------T------N-----------------------  261 (393)
Q Consensus       228 ~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~---------------~------~-----------------------  261 (393)
                      ..-.+..+.|+|.  +|++|+.|+.+++.+--+-               .      +                       
T Consensus       209 ~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~  288 (447)
T KOG4497|consen  209 RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHI  288 (447)
T ss_pred             eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCc
Confidence            3346778889984  9999999999988652110               0      0                       


Q ss_pred             ------ccc------------CceeecCceeeEEEEEEcCC--EEEEecC--CCcEEEeeCCCcceeeEeccCccceEEE
Q 016224          262 ------CFE------------PAASLKGHSLAVVSLVVGAN--KLYSGSM--DNSIRVWNLETLQCIQTLTEHTSVVMSL  319 (393)
Q Consensus       262 ------~~~------------~~~~~~~~~~~v~~l~~~~~--~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l  319 (393)
                            .++            +...+......+--++|+.+  ++++-..  -+.+-+||++..+....+ ....+|...
T Consensus       289 ~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf  367 (447)
T KOG4497|consen  289 WEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAF  367 (447)
T ss_pred             cccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEE
Confidence                  000            00000111223344566533  4444332  357999999987765444 366789999


Q ss_pred             EEcCC--EEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCC
Q 016224          320 LCWDQ--FLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN  380 (393)
Q Consensus       320 ~~~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg  380 (393)
                      .|++.  .|+.+.....+++|...-   ............+..+.|..+++   .++-.+.|.
T Consensus       368 ~WdP~~prL~vctg~srLY~W~psg---~~~V~vP~~GF~i~~l~W~~~g~---~i~l~~kDa  424 (447)
T KOG4497|consen  368 EWDPGRPRLVVCTGKSRLYFWAPSG---PRVVGVPKKGFNIQKLQWLQPGE---FIVLCGKDA  424 (447)
T ss_pred             EeCCCCceEEEEcCCceEEEEcCCC---ceEEecCCCCceeeeEEecCCCc---EEEEEcCCc
Confidence            99943  566666677899998753   22333334446789999988776   677777764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.29  E-value=6.4e-09  Score=98.07  Aligned_cols=257  Identities=12%  Similarity=0.131  Sum_probs=165.8

Q ss_pred             EecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce--
Q 016224          117 WVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV--  194 (393)
Q Consensus       117 ~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~--  194 (393)
                      ...+.++.++.++.++.+|.+++ +.+-+.+.......+...  .+..++.+..++.|..+|.++|+.+..+....+.  
T Consensus       118 v~~~~v~v~~~~g~l~ald~~tG-~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~  194 (394)
T PRK11138        118 VAGGKVYIGSEKGQVYALNAEDG-EVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT  194 (394)
T ss_pred             EECCEEEEEcCCCEEEEEECCCC-CCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccc
Confidence            34667788999999999999999 665555433221111112  2456777888999999999999998887654221  


Q ss_pred             -----EEEEeCCCEEEEEcCCeEEEEECCCCcee-eec--CCCC--c-------EEEEEEeCCEEEEEeCCCcEEEEEec
Q 016224          195 -----GCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLS--GPVG--Q-------VYAMAVGNDLLFAGTQDGAILAWKFN  257 (393)
Q Consensus       195 -----~~~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~--~~~~--~-------v~~l~~~~~~l~~~~~dg~I~vwd~~  257 (393)
                           .....++.+++...++.+..+|..+++.+ ...  ....  .       .....+..+.+++++.+|.+..+|..
T Consensus       195 ~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~  274 (394)
T PRK11138        195 LRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR  274 (394)
T ss_pred             ccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence                 11223455555567889999999988765 211  1100  0       01122345577788889999999998


Q ss_pred             cCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccC-ccceEEEEEcCCEEEEEeCCCcEE
Q 016224          258 VTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEH-TSVVMSLLCWDQFLLSCSLDKTIK  336 (393)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~l~s~s~dg~i~  336 (393)
                      ++...++..  +.    ....+...++.++.++.++.+..+|..+++.+.....- .....+....+.+|+.++.||.|.
T Consensus       275 tG~~~W~~~--~~----~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~  348 (394)
T PRK11138        275 SGQIVWKRE--YG----SVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLH  348 (394)
T ss_pred             CCCEEEeec--CC----CccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEE
Confidence            875433221  11    11234556788888999999999999999876554321 122333444578899999999999


Q ss_pred             EEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          337 VWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       337 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      +.|..+++.+.........  +.+   .|--.++ .|+.++.||.|+.++++
T Consensus       349 ~ld~~tG~~~~~~~~~~~~--~~s---~P~~~~~-~l~v~t~~G~l~~~~~~  394 (394)
T PRK11138        349 WINREDGRFVAQQKVDSSG--FLS---EPVVADD-KLLIQARDGTVYAITRP  394 (394)
T ss_pred             EEECCCCCEEEEEEcCCCc--cee---CCEEECC-EEEEEeCCceEEEEeCC
Confidence            9999988766554432221  111   1111122 68888999999988764

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=1.7e-11  Score=111.83  Aligned_cols=158  Identities=22%  Similarity=0.254  Sum_probs=122.7

Q ss_pred             eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCcee-ecCceeeEEEEEEc----CCEEEEecCCCcEE
Q 016224          224 SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAAS-LKGHSLAVVSLVVG----ANKLYSGSMDNSIR  296 (393)
Q Consensus       224 ~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~-~~~~~~~v~~l~~~----~~~l~sg~~dg~i~  296 (393)
                      .+.+|.+.|.++.|+.+  +|++|+.|-.+.|||.-..    +++.. -.+|...|.++.|-    ..++++|..|..|+
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~----KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY----KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhc----ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            67899999999999987  9999999999999998754    44444 45799999999884    44799999999999


Q ss_pred             EeeCCC----------cceeeEeccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcceEEEE--------eecCC
Q 016224          297 VWNLET----------LQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTY--------THNEE  355 (393)
Q Consensus       297 iwd~~~----------~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~~~  355 (393)
                      +||+..          .+....+..|...|..|+..   +..+.++++||+|+-+|+++......-.        ....-
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            999984          33456677888888888776   4689999999999999998743211111        11122


Q ss_pred             ccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          356 HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       356 ~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      ....++..+|..+  .+|+.|+.|--.++||.
T Consensus       201 ielk~ltisp~rp--~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  201 IELKCLTISPSRP--YYLAVGGSDPFARLYDR  230 (758)
T ss_pred             heeeeeeecCCCC--ceEEecCCCchhhhhhh
Confidence            3455666776644  48999999999999994

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.27  E-value=8.5e-09  Score=97.26  Aligned_cols=264  Identities=13%  Similarity=0.120  Sum_probs=167.3

Q ss_pred             ecCcEEEecCCCeEEEEECCCCcEEEEEecCCc-C---------CEE-EEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224          118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-K---------VVS-GITLPSGSDKLYSGSKDETVRVWDCASGQCAG  186 (393)
Q Consensus       118 ~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~-~---------~I~-~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  186 (393)
                      ..+.+++++.++.|.-+|..++ +.+-..+... .         .+. .+..  ++..++.++.+|.+..+|.++|+.+.
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W  144 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTG-KEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAW  144 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCC-cEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcc
Confidence            5667788888999999999998 5555443221 0         000 0111  35678888899999999999999988


Q ss_pred             EEecCCceEE--EEeCCCEEEEEcCCeEEEEECCCCcee-eecCCCCc-----EEEEEEeCCEEEEEeCCCcEEEEEecc
Q 016224          187 VINLGGEVGC--MISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQ-----VYAMAVGNDLLFAGTQDGAILAWKFNV  258 (393)
Q Consensus       187 ~~~~~~~~~~--~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~-----v~~l~~~~~~l~~~~~dg~I~vwd~~~  258 (393)
                      ..........  +..++.+++...++.+..+|.++++.+ ........     ..+-....+.++.++.+|.+..+|..+
T Consensus       145 ~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~  224 (394)
T PRK11138        145 QTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQ  224 (394)
T ss_pred             cccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccC
Confidence            8876654332  234555555557889999999999977 33221110     011122345777788899999999888


Q ss_pred             CCccccCceeec--Cce----eeE-EEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCCEEEEEeC
Q 016224          259 TTNCFEPAASLK--GHS----LAV-VSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSL  331 (393)
Q Consensus       259 ~~~~~~~~~~~~--~~~----~~v-~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~  331 (393)
                      +...++......  .+.    ..+ .+-...++.++.++.++.+..+|..+++.+.+....  ....+...+..|+.++.
T Consensus       225 G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~~~~~vy~~~~  302 (394)
T PRK11138        225 GQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAVDGGRIYLVDQ  302 (394)
T ss_pred             ChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEEECCEEEEEcC
Confidence            754432111000  000    000 111234667888888999999999999887655421  22234556788888999


Q ss_pred             CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          332 DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       332 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      +|.+..+|..+++.+-........ ...+....  .  + +|+.++.||.|++.|..+|++
T Consensus       303 ~g~l~ald~~tG~~~W~~~~~~~~-~~~sp~v~--~--g-~l~v~~~~G~l~~ld~~tG~~  357 (394)
T PRK11138        303 NDRVYALDTRGGVELWSQSDLLHR-LLTAPVLY--N--G-YLVVGDSEGYLHWINREDGRF  357 (394)
T ss_pred             CCeEEEEECCCCcEEEcccccCCC-cccCCEEE--C--C-EEEEEeCCCEEEEEECCCCCE
Confidence            999999999887654332211111 01111110  2  2 688899999999999999875

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.26  E-value=2e-09  Score=99.38  Aligned_cols=178  Identities=20%  Similarity=0.250  Sum_probs=136.5

Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce----EE----E------------------EeCCCEEEEE-cCCe
Q 016224          159 PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV----GC----M------------------ISEGPWIFIG-VTNF  211 (393)
Q Consensus       159 s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~----~~----~------------------~~~~~~l~~~-~~~~  211 (393)
                      +|...++|....||.+++|+..+++....+......    .+    +                  ..+...++-| ..|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            345679999999999999999999887777532211    11    1                  1133455556 6679


Q ss_pred             EEEEECCCCcee---eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CC
Q 016224          212 VKAWNTQTNTDL---SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--AN  284 (393)
Q Consensus       212 i~v~d~~~~~~~---~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~  284 (393)
                      |.+|+...++..   ....|.+.|.++.++.+  .|.+++.|+.+..|+....    ............+.++.+.  +.
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~----~~~~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK----VIIRIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc----eeeeeeccCCCccceEEEcCCCC
Confidence            999999999876   33579999999999888  8999999999999999876    4556666666666666665  44


Q ss_pred             EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc-------CCEEEE-EeCCCcEEEEEcCC
Q 016224          285 KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-------DQFLLS-CSLDKTIKVWFATD  342 (393)
Q Consensus       285 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-------~~~l~s-~s~dg~i~iwd~~~  342 (393)
                      .+++++  +.|++||+++++.+.+|.+|.++|.++.|-       |.++++ ...+..+.+|-+..
T Consensus       158 ~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  158 ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            788776  689999999999999999999999999886       456554 45566788887654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=1.6e-09  Score=103.38  Aligned_cols=206  Identities=16%  Similarity=0.065  Sum_probs=129.2

Q ss_pred             CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC---CcEEEEECCCCeEEEEEecCCc--eEEEEeCCCE
Q 016224          129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCASGQCAGVINLGGE--VGCMISEGPW  203 (393)
Q Consensus       129 g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~  203 (393)
                      ..|.+||....  ..+.+..|...+.+.+|+||++.|+..+.+   ..|.+||+.+++..........  ...+.++++.
T Consensus       184 ~~l~i~D~~g~--~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        184 YALQVADSDGY--NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEEECCCCC--CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCE
Confidence            46889998644  334556677889999999999999988743   4699999988876544333322  2345678887


Q ss_pred             EEEE--cCC--eEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEe-CCCc--EEEEEeccCCccccCceeecCcee
Q 016224          204 IFIG--VTN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT-QDGA--ILAWKFNVTTNCFEPAASLKGHSL  274 (393)
Q Consensus       204 l~~~--~~~--~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~-~dg~--I~vwd~~~~~~~~~~~~~~~~~~~  274 (393)
                      ++..  .++  .|++||+.+++...+..+.......+|+++  .|+..+ .+|.  |+++|+..+..  +.+ ...+...
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~--~~l-t~~g~~~  338 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA--ERL-TFQGNYN  338 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe--EEe-ecCCCCc
Confidence            6543  333  699999999887776666666677899987  555444 4555  55555544321  111 1222221


Q ss_pred             eEEEEEEcCCEEEEecCCC---cEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCC---CcEEEEEcC
Q 016224          275 AVVSLVVGANKLYSGSMDN---SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD---KTIKVWFAT  341 (393)
Q Consensus       275 ~v~~l~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d---g~i~iwd~~  341 (393)
                      .-.+++.++++|+..+.++   .|.+||+.+++.. .+. +........|+  +++|+..+.+   +.|.++++.
T Consensus       339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~  411 (433)
T PRK04922        339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD  411 (433)
T ss_pred             cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            1234445677777654332   6999999887654 343 22233445566  6666655543   357777774

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.25  E-value=3.7e-10  Score=97.64  Aligned_cols=191  Identities=21%  Similarity=0.337  Sum_probs=135.6

Q ss_pred             ecceEEeeEecC--cEEEecCCCeEEEEECCCCc---EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 016224          109 KTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGF---KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ  183 (393)
Q Consensus       109 ~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~---~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~  183 (393)
                      ..+++++.+..+  .++.|-..|++.-+.+...+   ..++....|...|..+.|+...+.+++.+.|..+.---.+.+.
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~  147 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN  147 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence            346777888766  45678888999888766332   4556667899999999999999999999999776544444555


Q ss_pred             EEEEEecCCceEEEEeCCCEEEEE-cCCeEEEEEC---CCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEec
Q 016224          184 CAGVINLGGEVGCMISEGPWIFIG-VTNFVKAWNT---QTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN  257 (393)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~v~d~---~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~  257 (393)
                      .+..+...........+-.+.++| ..+.|....+   .-+....+.+|...+.+++|.+.  .|++|..|..|.+||+.
T Consensus       148 ~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig  227 (404)
T KOG1409|consen  148 RLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG  227 (404)
T ss_pred             cccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence            444333222211111111155555 4444444333   33344488999999999999887  99999999999999998


Q ss_pred             cCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCC
Q 016224          258 VTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET  302 (393)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~  302 (393)
                      ...   .....+.+|...|..+..-  -..+++++.||.|.+||.+.
T Consensus       228 g~~---g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  228 GRK---GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             CCc---ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            764   4456677888888877654  35799999999999999874

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.23  E-value=1.2e-08  Score=89.16  Aligned_cols=214  Identities=17%  Similarity=0.123  Sum_probs=138.0

Q ss_pred             CCcEEEEECCCCeEEEEEecCC---ceE-EEE-eCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCCEEEE
Q 016224          171 DETVRVWDCASGQCAGVINLGG---EVG-CMI-SEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFA  244 (393)
Q Consensus       171 dg~v~iwd~~~~~~~~~~~~~~---~~~-~~~-~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~~l~~  244 (393)
                      +|+|..||..+|+.+.......   ... ... .++.+++...++.+..||..+++.+ ................+.+++
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v   81 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYV   81 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccccc
Confidence            6899999999999999997632   222 133 3444444458899999999999877 332211111113556667788


Q ss_pred             EeCCCcEEEEEeccCCccccC-ceeecCc-eeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccc-------
Q 016224          245 GTQDGAILAWKFNVTTNCFEP-AASLKGH-SLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSV-------  315 (393)
Q Consensus       245 ~~~dg~I~vwd~~~~~~~~~~-~~~~~~~-~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-------  315 (393)
                      ++.++.|+.+|..++...++. ....... ........+.++.++.+..++.|..+|+++|+.+.........       
T Consensus        82 ~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~  161 (238)
T PF13360_consen   82 GTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISS  161 (238)
T ss_dssp             EETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEE
T ss_pred             ccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceee
Confidence            888899999998888654331 1111111 1223345556889999999999999999999998888664422       


Q ss_pred             ----eEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          316 ----VMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       316 ----v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                          ...+.+.+..++.++.++.+.-+|+.+++.+.  .....  ..... ..  ..++ .|+.++.++.|..||+.+|+
T Consensus       162 ~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w--~~~~~--~~~~~-~~--~~~~-~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  162 FSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLW--SKPIS--GIYSL-PS--VDGG-TLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             ETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEE--EECSS---ECEC-EE--CCCT-EEEEEETTTEEEEEETTTTE
T ss_pred             ecccccceEEECCEEEEEcCCCeEEEEECCCCCEEE--EecCC--CccCC-ce--eeCC-EEEEEeCCCEEEEEECCCCC
Confidence                13334445588888888864444998887542  11111  12221 11  2233 67777799999999999997


Q ss_pred             e
Q 016224          392 I  392 (393)
Q Consensus       392 l  392 (393)
                      +
T Consensus       234 ~  234 (238)
T PF13360_consen  234 V  234 (238)
T ss_dssp             E
T ss_pred             E
Confidence            5

...

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.22  E-value=1.4e-08  Score=88.82  Aligned_cols=216  Identities=18%  Similarity=0.105  Sum_probs=142.5

Q ss_pred             CCCeEEEEECCCCcEEEEEecCC--cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce--EEEEeCCC
Q 016224          127 KCKFLHSWTVGDGFKLLTQLEGH--QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV--GCMISEGP  202 (393)
Q Consensus       127 ~dg~i~vwd~~~~~~~~~~l~~h--~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~  202 (393)
                      .+|+|..||..++ +.+....--  .....+. ..+++.++++++.++.|..||..+|+.+..+......  .....++.
T Consensus         1 ~~g~l~~~d~~tG-~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~   78 (238)
T PF13360_consen    1 DDGTLSALDPRTG-KELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGR   78 (238)
T ss_dssp             -TSEEEEEETTTT-EEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTE
T ss_pred             CCCEEEEEECCCC-CEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccc
Confidence            3688999999999 666666431  1222211 2235678888899999999999999999988875442  22455666


Q ss_pred             EEEEEcCCeEEEEECCCCcee-e-ecCC-----CCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCcee-
Q 016224          203 WIFIGVTNFVKAWNTQTNTDL-S-LSGP-----VGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSL-  274 (393)
Q Consensus       203 ~l~~~~~~~i~v~d~~~~~~~-~-~~~~-----~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~-  274 (393)
                      +++...++.+..+|..+++.+ . ....     ........+..+.++++..++.|..+|+.++...++.......-.. 
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~  158 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP  158 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence            666677889999999999987 3 2221     1123345556778899998999999999988543221111000001 


Q ss_pred             ------eEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEE-EEEcCCEEEEEeCCCcEEEEEcCCCcce
Q 016224          275 ------AVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMS-LLCWDQFLLSCSLDKTIKVWFATDSGNL  346 (393)
Q Consensus       275 ------~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~~~~~l~s~s~dg~i~iwd~~~~~~~  346 (393)
                            ....+.+.++.++.++.++.+..+|+.+++.+....  ...+.. ....+..|+.++.++.|..||+++++..
T Consensus       159 ~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  159 ISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             eeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence                  113334445588888888864444999998665333  222333 5556888888889999999999988754

...

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=8.7e-10  Score=105.00  Aligned_cols=206  Identities=13%  Similarity=0.130  Sum_probs=129.9

Q ss_pred             eeecceEEeeEecCc--EEEecC---CCeEEEEECCCCc-EEEEEecCCcCCEEEEEecCCCCEEEEEe-CCCcEEEE--
Q 016224          107 VIKTDILCRNWVQGN--CMYGEK---CKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVW--  177 (393)
Q Consensus       107 ~~~~~i~c~~~~~~~--~~~g~~---dg~i~vwd~~~~~-~~~~~l~~h~~~I~~i~~s~~~~~l~s~s-~dg~v~iw--  177 (393)
                      .+...+....|++++  +++.+.   +..|++||+.++. +.+..+.+|.   ..++|+||++.|+.++ .+|.+.||  
T Consensus       201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~  277 (429)
T PRK01742        201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVM  277 (429)
T ss_pred             cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEE
Confidence            345578899999885  444432   3479999998772 2344455443   4689999999888764 68876655  


Q ss_pred             ECCCCeEEEEEecCCc--eEEEEeCCCEEEEE--cCCeEEEEECC--CCceeeecCCCCcEEEEEEeCC--EEEEEeCCC
Q 016224          178 DCASGQCAGVINLGGE--VGCMISEGPWIFIG--VTNFVKAWNTQ--TNTDLSLSGPVGQVYAMAVGND--LLFAGTQDG  249 (393)
Q Consensus       178 d~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~--~~~~i~v~d~~--~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg  249 (393)
                      |+.+++..........  ...+.++++.++..  .++...+|++.  .+....+ .+..  ....|+|+  .|+..+.++
T Consensus       278 d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~  354 (429)
T PRK01742        278 GANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN  354 (429)
T ss_pred             ECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC
Confidence            6666654433322222  24456788866644  35667777654  3333222 3333  45678887  666666654


Q ss_pred             cEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeC--CCcceeeEeccCccceEEEEEcC
Q 016224          250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNL--ETLQCIQTLTEHTSVVMSLLCWD  323 (393)
Q Consensus       250 ~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~l~~~~  323 (393)
                       +.+||+.++...  .+  ...+...-.++++++++|+.++.++.+.+|++  .+++.++.+..|.+.+...+|++
T Consensus       355 -i~~~Dl~~g~~~--~l--t~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp  425 (429)
T PRK01742        355 -VVKQDLTSGSTE--VL--SSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSP  425 (429)
T ss_pred             -EEEEECCCCCeE--Ee--cCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCC
Confidence             666998776421  11  11111122345566889999999998888876  35888888988888888777764

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.22  E-value=8.5e-10  Score=94.59  Aligned_cols=206  Identities=16%  Similarity=0.112  Sum_probs=153.9

Q ss_pred             ecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeee
Q 016224          146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSL  225 (393)
Q Consensus       146 l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~  225 (393)
                      +.--..+|+|.+|++|...+|.+-....|.||.....+.-...                                  ..+
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~----------------------------------htl   51 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPA----------------------------------HTL   51 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceec----------------------------------eeh
Confidence            3334579999999999999999999999999987665422111                                  256


Q ss_pred             cCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCC
Q 016224          226 SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLE  301 (393)
Q Consensus       226 ~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~  301 (393)
                      ..|...|+.+.|++.  .|++++.|..-++|....+ ..+++...+..+....+++.|.  ++.|++|+.-..|.||-++
T Consensus        52 s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~-~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E  130 (361)
T KOG1523|consen   52 SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG-GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYE  130 (361)
T ss_pred             hhhCcceeEEeecCCCCceeEccCCCCccccccCCC-CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEe
Confidence            789999999999987  8999999999999988533 3357777777888899999987  5689999999999999886


Q ss_pred             Ccce----eeEeccCccceEEEEEcC--CEEEEEeCCCcEEEEEcC-----CCc-------c--eEEE--EeecCCccEE
Q 016224          302 TLQC----IQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFAT-----DSG-------N--LEVT--YTHNEEHGVL  359 (393)
Q Consensus       302 ~~~~----~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~-----~~~-------~--~~~~--~~~~~~~~v~  359 (393)
                      ...-    .+.-+.+...|+++.|.+  -+|++|+.|+..+||..-     +..       +  +..+  ........+.
T Consensus       131 ~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh  210 (361)
T KOG1523|consen  131 QENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVH  210 (361)
T ss_pred             cccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCcee
Confidence            5322    112235678899999993  478899999999999642     100       0  0000  0013445788


Q ss_pred             EEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          360 ALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       360 ~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      .+.|+|.+.   .|+-.+.|..|.+=|...
T Consensus       211 ~v~fs~sG~---~lawv~Hds~v~~~da~~  237 (361)
T KOG1523|consen  211 GVLFSPSGN---RLAWVGHDSTVSFVDAAG  237 (361)
T ss_pred             eeEeCCCCC---EeeEecCCCceEEeecCC
Confidence            999988766   899899999998877543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.22  E-value=5.8e-10  Score=109.04  Aligned_cols=189  Identities=17%  Similarity=0.254  Sum_probs=148.0

Q ss_pred             cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEE-------eCCCEEEEE-cCCeEEEEECCCCc
Q 016224          150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI-------SEGPWIFIG-VTNFVKAWNTQTNT  221 (393)
Q Consensus       150 ~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~-~~~~i~v~d~~~~~  221 (393)
                      ...|..-.+..+...++.+..+..+.+||...+.....+..........       .+.-++++| .-+.|.+|+.....
T Consensus        87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn  166 (967)
T KOG0974|consen   87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN  166 (967)
T ss_pred             cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence            3445555666677889999999999999998887777776665432211       133345555 67899999988544


Q ss_pred             ee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEe
Q 016224          222 DL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVW  298 (393)
Q Consensus       222 ~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iw  298 (393)
                      .. .+.+|.+.|.++.++.+  ++++.+.|.++++|++.+..   ......-+|+..+..+.+.++++++++.|-+.++|
T Consensus       167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~---~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW  243 (967)
T KOG0974|consen  167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSRE---VLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVW  243 (967)
T ss_pred             CcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccc---ccCcccccccceeEEEEeccceeEEeccceEEEEE
Confidence            44 68999999999999776  99999999999999999874   23346678999999999999999999999999999


Q ss_pred             eCCCcceeeEeccCcc-ceEEEEEc--CCEEEEEeCCCcEEEEEcCC
Q 016224          299 NLETLQCIQTLTEHTS-VVMSLLCW--DQFLLSCSLDKTIKVWFATD  342 (393)
Q Consensus       299 d~~~~~~~~~~~~~~~-~v~~l~~~--~~~l~s~s~dg~i~iwd~~~  342 (393)
                      +.. ++.+..+..|.. .+..++..  ...++|++.|+.+++||+..
T Consensus       244 ~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  244 GVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            765 555668887765 46777777  34788999999999999854

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=6.1e-09  Score=99.11  Aligned_cols=207  Identities=14%  Similarity=0.080  Sum_probs=124.6

Q ss_pred             CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC---CcEEEEECCCCeEEEEEecCC--ceEEEEeCCCE
Q 016224          129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCASGQCAGVINLGG--EVGCMISEGPW  203 (393)
Q Consensus       129 g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~  203 (393)
                      ..|.++|.+.  ...+.+..+...+.+.+|+||++.|+..+.+   ..|.+||+.+++.........  ....+.++++.
T Consensus       176 ~~L~~~D~dG--~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDADG--QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECCCC--CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence            4677777643  3334555678899999999999999887643   359999999887654433332  23455678887


Q ss_pred             EEEE--cCCe--EEEEECCCCceeeecCCCCcEEEEEEeCC--EEE-EEeCCCcEEEEEeccCCccccCceeecCceeeE
Q 016224          204 IFIG--VTNF--VKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLF-AGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV  276 (393)
Q Consensus       204 l~~~--~~~~--i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~-~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v  276 (393)
                      |+..  .++.  |.++|...+....+..+........|+|+  .|+ +...++...+|.+.......+.+ .+.+....-
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-t~~g~~~~~  332 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-TFTGSYNTS  332 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-ecCCCCcCc
Confidence            7643  4554  55556666665566555556677889988  444 44445677777665332111111 122211112


Q ss_pred             EEEEEcCCEEEEecCCC---cEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCC-c--EEEEEc
Q 016224          277 VSLVVGANKLYSGSMDN---SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDK-T--IKVWFA  340 (393)
Q Consensus       277 ~~l~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg-~--i~iwd~  340 (393)
                      ..+++++++|+..+.++   .|.+||+.+++... +... .......|+  +++|+..+.++ .  +.+.++
T Consensus       333 ~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        333 PRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             eEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence            34555678877666544   69999998876543 3322 223455666  66666655443 3  444454

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.19  E-value=6.6e-10  Score=102.13  Aligned_cols=192  Identities=14%  Similarity=0.241  Sum_probs=145.8

Q ss_pred             cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeC
Q 016224          121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISE  200 (393)
Q Consensus       121 ~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  200 (393)
                      .+++++....|+-.+++.| +.+..|....+.+.+|..++...+|+.|+.+|.|..||.++...+..+.....+...   
T Consensus       147 Dly~~gsg~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~---  222 (703)
T KOG2321|consen  147 DLYLVGSGSEVYRLNLEQG-RFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSH---  222 (703)
T ss_pred             cEEEeecCcceEEEEcccc-ccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCC---
Confidence            5667777888999999999 888889888899999999999999999999999999999988777766543321110   


Q ss_pred             CCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEE
Q 016224          201 GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS  278 (393)
Q Consensus       201 ~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~  278 (393)
                                             ........|+++.|+.+  .+++|+.+|.|.|||++....   .+..-.+...+|..
T Consensus       223 -----------------------pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p---l~~kdh~~e~pi~~  276 (703)
T KOG2321|consen  223 -----------------------PGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP---LLVKDHGYELPIKK  276 (703)
T ss_pred             -----------------------ccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc---eeecccCCccceee
Confidence                                   11123346999999987  899999999999999999753   22233344567888


Q ss_pred             EEEcC----CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCc
Q 016224          279 LVVGA----NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSG  344 (393)
Q Consensus       279 l~~~~----~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~  344 (393)
                      +.|..    +.+++. ....++|||-.+|+....+..-. .+..+++.  ..+++++-.+..+..|=+...+
T Consensus       277 l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG  346 (703)
T KOG2321|consen  277 LDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS-DLNDFCFVPGSGMFFTANESSKMHTYYIPSLG  346 (703)
T ss_pred             ecccccCCCceEEec-chHHhhhcccccCCceeeccccC-CcCceeeecCCceEEEecCCCcceeEEccccC
Confidence            88842    345444 56789999999999988887433 47666665  5688999888888877665544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.18  E-value=4.3e-10  Score=115.26  Aligned_cols=211  Identities=15%  Similarity=0.235  Sum_probs=147.0

Q ss_pred             cceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEe-cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224          110 TDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQL-EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG  186 (393)
Q Consensus       110 ~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l-~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  186 (393)
                      ..+.|+.-.+.  ..++|+.||.+++|....+ +.+..+ ..-.+.|+.+.|+.+|+.+..+..||.+.+|.+. .+...
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~-~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~ 2286 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG-QQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYT 2286 (2439)
T ss_pred             CceeeecCCCCCceEEecCCCceEEEEeccCC-CeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cccee
Confidence            35666655544  4668999999999999887 444433 3344899999999999999999999999999987 33333


Q ss_pred             EEecCC-ceEEEEeCCCEEEE-E---cCCeEEEEECCCCc--eeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEec
Q 016224          187 VINLGG-EVGCMISEGPWIFI-G---VTNFVKAWNTQTNT--DLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN  257 (393)
Q Consensus       187 ~~~~~~-~~~~~~~~~~~l~~-~---~~~~i~v~d~~~~~--~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~  257 (393)
                      ..+.+. ....+..-+..+++ |   .++.+.+||.....  ......|.+.++++++.|.  +|++|+.+|.|++||++
T Consensus      2287 s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~r 2366 (2439)
T KOG1064|consen 2287 SWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIR 2366 (2439)
T ss_pred             ccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehH
Confidence            333332 22222222233443 3   44599999976443  3345889999999999998  99999999999999999


Q ss_pred             cCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEecc-C--ccce----EEEEEc-CCEEEEE
Q 016224          258 VTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTE-H--TSVV----MSLLCW-DQFLLSC  329 (393)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~--~~~v----~~l~~~-~~~l~s~  329 (393)
                      ..    ++.+.++.       +. ...+|++|+..|.|+||++.....++++.. |  .+..    ..+... .+.|.+|
T Consensus      2367 qr----ql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsC 2434 (2439)
T KOG1064|consen 2367 QR----QLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSC 2434 (2439)
T ss_pred             HH----HHHHHhhh-------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeeccCceEEEe
Confidence            86    33444432       22 456899999999999999999888887753 1  1110    111111 4567777


Q ss_pred             eCCCc
Q 016224          330 SLDKT  334 (393)
Q Consensus       330 s~dg~  334 (393)
                      +.|++
T Consensus      2435 gad~~ 2439 (2439)
T KOG1064|consen 2435 GADGT 2439 (2439)
T ss_pred             cCCCC
Confidence            77763

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.18  E-value=1.9e-09  Score=93.41  Aligned_cols=237  Identities=14%  Similarity=0.212  Sum_probs=152.5

Q ss_pred             CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-----EEEEEecCCc-------------e--EEEEe---CCCEEE
Q 016224          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ-----CAGVINLGGE-------------V--GCMIS---EGPWIF  205 (393)
Q Consensus       149 h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~-----~~~~~~~~~~-------------~--~~~~~---~~~~l~  205 (393)
                      ...-|.+|.|...|++||||..+|.|.++.-+...     ....++.+.+             +  ..+..   ...+|+
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            34678999999999999999999999999754322     2222322211             1  11222   234677


Q ss_pred             EEcCCeEEEEECCCCcee-------------------------------------eecCCCCcEEEEEEeCC-EEEEEeC
Q 016224          206 IGVTNFVKAWNTQTNTDL-------------------------------------SLSGPVGQVYAMAVGND-LLFAGTQ  247 (393)
Q Consensus       206 ~~~~~~i~v~d~~~~~~~-------------------------------------~~~~~~~~v~~l~~~~~-~l~~~~~  247 (393)
                      ++.|.+|++|.+......                                     -...|.-.|.++.++.| ..+....
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD  183 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD  183 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence            789999999987643210                                     11346677888999888 5555568


Q ss_pred             CCcEEEEEeccCCccccCceeecCc-----eeeEEEEEEcC---CEEEEecCCCcEEEeeCCCcceee----Ee------
Q 016224          248 DGAILAWKFNVTTNCFEPAASLKGH-----SLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQ----TL------  309 (393)
Q Consensus       248 dg~I~vwd~~~~~~~~~~~~~~~~~-----~~~v~~l~~~~---~~l~sg~~dg~i~iwd~~~~~~~~----~~------  309 (393)
                      |=.|.+|++.-....+..+- ++.+     ..-|++..|++   +.|+-.+..|+|++-|++...+..    .+      
T Consensus       184 dLRINLWnlei~d~sFnIVD-IKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVD-IKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             ceeeeeccccccCCceeEEE-ccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence            89999999887654433221 1211     23355556654   478888899999999998532211    11      


Q ss_pred             ------ccCccceEEEEEc--CCEEEEEeCCCcEEEEEcC-CCcceEEEEeecCC-------------ccEEEEEeeeCC
Q 016224          310 ------TEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFAT-DSGNLEVTYTHNEE-------------HGVLALCGMPDS  367 (393)
Q Consensus       310 ------~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~-------------~~v~~~~~~~~~  367 (393)
                            ..--..|..+.|+  |+||++-.. -+|++||+. +.+.+.....|...             ..-..++|+-+.
T Consensus       263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~  341 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND  341 (433)
T ss_pred             cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence                  1112356777887  678887543 589999994 44555555544311             123445665544


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCce
Q 016224          368 EGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       368 ~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      .   +++||+..+.++++++..|
T Consensus       342 ~---~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  342 S---YVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             c---eEecccccceEEEecCCCC
Confidence            4   8999999999999996654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.14  E-value=3.7e-10  Score=115.72  Aligned_cols=192  Identities=15%  Similarity=0.196  Sum_probs=150.1

Q ss_pred             cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce--EEE--E-eCCCEEEEEcCCeEEEEECCCCc
Q 016224          147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV--GCM--I-SEGPWIFIGVTNFVKAWNTQTNT  221 (393)
Q Consensus       147 ~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~--~~~--~-~~~~~l~~~~~~~i~v~d~~~~~  221 (393)
                      +.|-..|.++.-+|...+-+||+.||.|++|....++.+..+...+..  ..+  . ..+++-++..||.+.+|......
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~ 2284 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKP 2284 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcc
Confidence            345577888888899999999999999999999999888877755442  211  1 24556666799999999999666


Q ss_pred             eeeecCCCCcEEEEEEeCCEEEEEe---CCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEE
Q 016224          222 DLSLSGPVGQVYAMAVGNDLLFAGT---QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIR  296 (393)
Q Consensus       222 ~~~~~~~~~~v~~l~~~~~~l~~~~---~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~  296 (393)
                      ....+.|......+.|-...+++++   .++.+.+||....... ..+.  ..|...++++++-++  .|++|+.+|.|+
T Consensus      2285 ~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~-s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMN-SLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred             eeccccCCccccceeeeehhhhccccCCCCCcccchhcccCccc-ceee--eecCCCceEEEEcCcceEEEecCCcCcEE
Confidence            6688889999999999888777764   5688999997654322 2233  668888888877654  799999999999


Q ss_pred             EeeCCCcceeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEE
Q 016224          297 VWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVT  349 (393)
Q Consensus       297 iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  349 (393)
                      +||++..+++++++.       +. ...++++++..|.|+||++.+...+..+
T Consensus      2362 l~D~rqrql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             EeehHHHHHHHHhhh-------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence            999999999888875       22 4678999999999999999876555444

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=1e-08  Score=97.46  Aligned_cols=209  Identities=13%  Similarity=0.047  Sum_probs=130.4

Q ss_pred             eecceEEeeEecCc--EEEe---cCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEE-eCCC--cEEEEEC
Q 016224          108 IKTDILCRNWVQGN--CMYG---EKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG-SKDE--TVRVWDC  179 (393)
Q Consensus       108 ~~~~i~c~~~~~~~--~~~g---~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~-s~dg--~v~iwd~  179 (393)
                      +...+....|++++  +++.   ..+..|++|++.++ +.. .+......+...+|+|||+.|+.. +.+|  .|.+||+
T Consensus       197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G-~~~-~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~  274 (429)
T PRK03629        197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG-AVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  274 (429)
T ss_pred             CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCC-CeE-EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence            34478889999885  3332   23568999999877 322 222233344568999999988765 4455  5889999


Q ss_pred             CCCeEEEEEecCCc--eEEEEeCCCEEEEE-cC-C--eEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeC-C--
Q 016224          180 ASGQCAGVINLGGE--VGCMISEGPWIFIG-VT-N--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ-D--  248 (393)
Q Consensus       180 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~-~~-~--~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~-d--  248 (393)
                      .+++..........  ...+.++++.|+.. .+ +  .|.++++.++....+...........|+|+  .|+..+. +  
T Consensus       275 ~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~  354 (429)
T PRK03629        275 ASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ  354 (429)
T ss_pred             CCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCC
Confidence            98876554443322  23455788877654 32 3  566667877766555544455667888887  5555443 3  


Q ss_pred             CcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCc---EEEeeCCCcceeeEeccCccceEEEEEcC
Q 016224          249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNS---IRVWNLETLQCIQTLTEHTSVVMSLLCWD  323 (393)
Q Consensus       249 g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~---i~iwd~~~~~~~~~~~~~~~~v~~l~~~~  323 (393)
                      ..|.+||+.++..  ..+.  ......-..++.++.+|+..+.++.   +.++++ +++....+..|.+.+...+|++
T Consensus       355 ~~I~~~dl~~g~~--~~Lt--~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        355 QHIAKQDLATGGV--QVLT--DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             ceEEEEECCCCCe--EEeC--CCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence            3478888876532  1111  1111222345567888888877764   677777 4666677777777777776653

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.11  E-value=1.8e-07  Score=81.91  Aligned_cols=270  Identities=16%  Similarity=0.178  Sum_probs=166.7

Q ss_pred             ceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecC-CcCCEEEEEecCCC-CEEEEEeCCCcEEEEECCCC----
Q 016224          111 DILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEG-HQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASG----  182 (393)
Q Consensus       111 ~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~-h~~~I~~i~~s~~~-~~l~s~s~dg~v~iwd~~~~----  182 (393)
                      .+.-++|++.  .++++..|-.|++|+...  +....++. -...|++++|-|.+ ..|+.|... -|.+|.....    
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~kss--t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~  176 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS--TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN  176 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCC--CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence            5566778764  344688999999999765  33334442 45789999998854 566666654 6899986432    


Q ss_pred             eE--------EEEEecC--CceEEEE--eCCCEEEEE--cCCeEEEEECCCCceeeec-CCCCcEEEEEEeCC--EEEEE
Q 016224          183 QC--------AGVINLG--GEVGCMI--SEGPWIFIG--VTNFVKAWNTQTNTDLSLS-GPVGQVYAMAVGND--LLFAG  245 (393)
Q Consensus       183 ~~--------~~~~~~~--~~~~~~~--~~~~~l~~~--~~~~i~v~d~~~~~~~~~~-~~~~~v~~l~~~~~--~l~~~  245 (393)
                      ..        ...++.+  ..+..+.  .++..++++  .+..|.+||..++..+.+. ...+.+.-+.|+|+  +|+++
T Consensus       177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA  256 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA  256 (445)
T ss_pred             cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence            11        1122222  2333333  467777765  5669999999999888655 45677889999998  99999


Q ss_pred             eCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCE-EEEecCCCcEEEeeCC--Cc-----------ceeeEe
Q 016224          246 TQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANK-LYSGSMDNSIRVWNLE--TL-----------QCIQTL  309 (393)
Q Consensus       246 ~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~-l~sg~~dg~i~iwd~~--~~-----------~~~~~~  309 (393)
                      +-|+..++|+....-   ....-.. -.+.|..-.|+  |.+ |++.+..-.|+--...  ..           .++..+
T Consensus       257 t~davfrlw~e~q~w---t~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL  332 (445)
T KOG2139|consen  257 TCDAVFRLWQENQSW---TKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADL  332 (445)
T ss_pred             cccceeeeehhcccc---eecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccc
Confidence            999999999655432   1111111 22366666665  443 4444433333221111  10           011111


Q ss_pred             c-----cC----ccceEEEEEc--CCEEEEEeCCCc--------EEEEEcCCCcceEEEE-eecCCccEEEEEeeeCCCC
Q 016224          310 T-----EH----TSVVMSLLCW--DQFLLSCSLDKT--------IKVWFATDSGNLEVTY-THNEEHGVLALCGMPDSEG  369 (393)
Q Consensus       310 ~-----~~----~~~v~~l~~~--~~~l~s~s~dg~--------i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~  369 (393)
                      .     ..    .+...+++|+  |.+|++.-..+.        |.+||.+..-.++... +......-..++|.|....
T Consensus       333 ~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~  412 (445)
T KOG2139|consen  333 QEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNE  412 (445)
T ss_pred             hhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccC
Confidence            1     11    3456788888  788888765433        6788877655444432 2222223556788887777


Q ss_pred             CcEEEEEeCCCeEEEEeC
Q 016224          370 KPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       370 ~~~l~s~s~dg~I~iwd~  387 (393)
                      +++|..+=+.|.+.-|++
T Consensus       413 g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  413 GRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             CcEEEEEeccCceEeeee
Confidence            778888888899888876

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.11  E-value=6e-09  Score=88.48  Aligned_cols=132  Identities=20%  Similarity=0.294  Sum_probs=97.8

Q ss_pred             EEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CCEEEEecCCCcEEEeeCC-Cccee
Q 016224          233 YAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLE-TLQCI  306 (393)
Q Consensus       233 ~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~-~~~~~  306 (393)
                      .++.|++.  .++++-.+|.+.+-+.....  .+..+..+.|..++...+|+   ++.+++|+.|+.+..||++ .++.+
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~--le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i  202 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYETEMV--LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI  202 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEecceee--eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence            44555544  78888889998865544432  24455788899888888875   6799999999999999999 34444


Q ss_pred             eE-eccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCC
Q 016224          307 QT-LTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE  368 (393)
Q Consensus       307 ~~-~~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  368 (393)
                      .. .+-|...|.+|..+   +.+|++|+.|..|++||.++..+.  +.......+|..+.++|...
T Consensus       203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP--l~~~~v~GGVWRi~~~p~~~  266 (339)
T KOG0280|consen  203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP--LFKAKVGGGVWRIKHHPEIF  266 (339)
T ss_pred             eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc--cccCccccceEEEEecchhh
Confidence            44 55788999999888   459999999999999999865543  22233335688888888654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.09  E-value=2.7e-06  Score=78.65  Aligned_cols=266  Identities=13%  Similarity=0.175  Sum_probs=156.6

Q ss_pred             EEecCC----CeEEEEEC--CCC-cEEEEEecCCcCCEEEEEecCCCCEEEEEeC----CCcEEEEECCCC--e--EEEE
Q 016224          123 MYGEKC----KFLHSWTV--GDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSK----DETVRVWDCASG--Q--CAGV  187 (393)
Q Consensus       123 ~~g~~d----g~i~vwd~--~~~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~----dg~v~iwd~~~~--~--~~~~  187 (393)
                      ++|+..    +.|++|++  +++ .+.+..+. -......|+++|++++|+++..    ++.|..|++...  +  .+..
T Consensus         3 ~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~   81 (345)
T PF10282_consen    3 YVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS   81 (345)
T ss_dssp             EEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence            445544    78898888  344 12222222 3455677889999999999977    579999988764  3  3333


Q ss_pred             Ee-cCCce--EEEEeCCCEEEEE--cCCeEEEEECCCC-ceee---ec-----------CCCCcEEEEEEeCC--EEEE-
Q 016224          188 IN-LGGEV--GCMISEGPWIFIG--VTNFVKAWNTQTN-TDLS---LS-----------GPVGQVYAMAVGND--LLFA-  244 (393)
Q Consensus       188 ~~-~~~~~--~~~~~~~~~l~~~--~~~~i~v~d~~~~-~~~~---~~-----------~~~~~v~~l~~~~~--~l~~-  244 (393)
                      .. .....  ..+.+++++|+++  .++.|.++++... ....   ..           .......++.++|+  ++++ 
T Consensus        82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~  161 (345)
T PF10282_consen   82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP  161 (345)
T ss_dssp             EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred             eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence            43 22222  2233688888887  5789999999874 3221   11           23456788999998  4444 


Q ss_pred             EeCCCcEEEEEeccCCccccCceeec-CceeeEEEEEEc--CCEE-EEecCCCcEEEeeCC--Ccc--eeeEeccC----
Q 016224          245 GTQDGAILAWKFNVTTNCFEPAASLK-GHSLAVVSLVVG--ANKL-YSGSMDNSIRVWNLE--TLQ--CIQTLTEH----  312 (393)
Q Consensus       245 ~~~dg~I~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~--~~~l-~sg~~dg~i~iwd~~--~~~--~~~~~~~~----  312 (393)
                      --....|.+|++............+. .....-..+.++  ++++ ++.-.++.|.++++.  +++  .++.+...    
T Consensus       162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~  241 (345)
T PF10282_consen  162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF  241 (345)
T ss_dssp             ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred             ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence            44556899999987653222222221 122233455554  5565 455568899999988  332  23333211    


Q ss_pred             --ccceEEEEEc--CCEEEEEe-CCCcEEEEEcC-CCcceEEEEeec-CCccEEEEEeeeCCCCCcEEEEEe-CCCeEEE
Q 016224          313 --TSVVMSLLCW--DQFLLSCS-LDKTIKVWFAT-DSGNLEVTYTHN-EEHGVLALCGMPDSEGKPVLLCSC-NDNSVRF  384 (393)
Q Consensus       313 --~~~v~~l~~~--~~~l~s~s-~dg~i~iwd~~-~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~l~s~s-~dg~I~i  384 (393)
                        ......|.++  +++|+++. .++.|.+|++. ..+.+..+.... .......+.++|++.   +|+++. .++.|.+
T Consensus       242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~---~l~Va~~~s~~v~v  318 (345)
T PF10282_consen  242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGR---YLYVANQDSNTVSV  318 (345)
T ss_dssp             CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSS---EEEEEETTTTEEEE
T ss_pred             cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCC---EEEEEecCCCeEEE
Confidence              1145667776  77766654 57789999994 334444433322 233467788877654   666665 6789999


Q ss_pred             EeC--Cceee
Q 016224          385 YDL--PSVII  392 (393)
Q Consensus       385 wd~--~s~~l  392 (393)
                      |++  .+|+|
T Consensus       319 f~~d~~tG~l  328 (345)
T PF10282_consen  319 FDIDPDTGKL  328 (345)
T ss_dssp             EEEETTTTEE
T ss_pred             EEEeCCCCcE
Confidence            976  46654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.09  E-value=4e-10  Score=103.16  Aligned_cols=271  Identities=15%  Similarity=0.195  Sum_probs=180.2

Q ss_pred             cceeecceEEeeEe--cCcEEEecCCCeEEEEECCCC------cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEE
Q 016224          105 RAVIKTDILCRNWV--QGNCMYGEKCKFLHSWTVGDG------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRV  176 (393)
Q Consensus       105 ~~~~~~~i~c~~~~--~~~~~~g~~dg~i~vwd~~~~------~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~i  176 (393)
                      .+.|...|..++-.  .+.+++++.|++|++|.+...      ..+..+++.|+.+|.++.|-.+-++++++  ||.|.+
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHl  808 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHL  808 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCccee
Confidence            44555566655443  346778999999999998732      13677889999999999999888888765  789999


Q ss_pred             EECCCCeEEEEEec------CCceEEEEe-CCCEEEEE--cCCeEEEEECCCCcee---e---ecCCCCcEEEEEEeCC-
Q 016224          177 WDCASGQCAGVINL------GGEVGCMIS-EGPWIFIG--VTNFVKAWNTQTNTDL---S---LSGPVGQVYAMAVGND-  240 (393)
Q Consensus       177 wd~~~~~~~~~~~~------~~~~~~~~~-~~~~l~~~--~~~~i~v~d~~~~~~~---~---~~~~~~~v~~l~~~~~-  240 (393)
                      ||.--++.+..+..      ...+.++.. +..++.++  ...+|+++|.+..+..   .   ..+....+.++++.+. 
T Consensus       809 WDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~G  888 (1034)
T KOG4190|consen  809 WDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKG  888 (1034)
T ss_pred             ecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCc
Confidence            99877776654322      123444444 45555555  6679999999987754   1   2345567888888665 


Q ss_pred             -EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEE-EcCCEEEEecCCCcEEE-eeCCCcceeeEeccCccceE
Q 016224          241 -LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLV-VGANKLYSGSMDNSIRV-WNLETLQCIQTLTEHTSVVM  317 (393)
Q Consensus       241 -~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~-~~~~~l~sg~~dg~i~i-wd~~~~~~~~~~~~~~~~v~  317 (393)
                       .++++-.+|.|.+.|.+++.    .+............++ ++...++....|.++.+ |-.-++......+....+..
T Consensus       889 N~lAa~LSnGci~~LDaR~G~----vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepah  964 (1034)
T KOG4190|consen  889 NKLAAALSNGCIAILDARNGK----VINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH  964 (1034)
T ss_pred             chhhHHhcCCcEEEEecCCCc----eeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchh
Confidence             99999999999999999883    3333332222223332 34556777778899998 98777766666555444444


Q ss_pred             EEEEcCCEEEEEeCCCcEEEEEcCCC----cceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEE
Q 016224          318 SLLCWDQFLLSCSLDKTIKVWFATDS----GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRF  384 (393)
Q Consensus       318 ~l~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~i  384 (393)
                      -+.-.|.-|+++.....+.+|--...    ..+..+.........++++-.|-..   -++.|.+.|.|.+
T Consensus       965 flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~---afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  965 FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNC---AFLAGNEHGAIAL 1032 (1034)
T ss_pred             hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccc---hhhccCCCCceee
Confidence            44434667888877778888843211    1112223333344566676666544   5777888888875

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.09  E-value=7.9e-09  Score=89.58  Aligned_cols=238  Identities=22%  Similarity=0.260  Sum_probs=162.7

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEE-CCCCeEEEEEec--CCceEEE--EeCCCEEEEE-cCCeEEE
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD-CASGQCAGVINL--GGEVGCM--ISEGPWIFIG-VTNFVKA  214 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd-~~~~~~~~~~~~--~~~~~~~--~~~~~~l~~~-~~~~i~v  214 (393)
                      .+++.++||.+.|++...-|-.+-+++.+.|.+++||- .+.++.-..+.+  +.+..++  ..+...|+++ ..+++.-
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte   94 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE   94 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence            56778899999999999988888899999999999995 444554444433  3333333  3577788888 4457777


Q ss_pred             EECCCCc----ee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCce--eeEEEEEEcCCE
Q 016224          215 WNTQTNT----DL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHS--LAVVSLVVGANK  285 (393)
Q Consensus       215 ~d~~~~~----~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~--~~v~~l~~~~~~  285 (393)
                      +.+...-    .. ....|...|..+-|+..  .+++.+.|..+.---.+.+..       +.++.  ....++.++-.+
T Consensus        95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~-------lg~Y~~~~~~t~~~~d~~~  167 (404)
T KOG1409|consen   95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR-------LGGYNFETPASALQFDALY  167 (404)
T ss_pred             EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc-------ccceEeeccCCCCceeeEE
Confidence            7654321    11 45678899999998755  888888888775444443321       11111  011111222115


Q ss_pred             EEEecCCCcEEEeeC--CCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcc-eEEEEeecCCccEEE
Q 016224          286 LYSGSMDNSIRVWNL--ETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGN-LEVTYTHNEEHGVLA  360 (393)
Q Consensus       286 l~sg~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~  360 (393)
                      ...|...|.|.+-.+  ....++.++.+|...++++.|+  ...|.+|..|..+.+||+.-... ......|..  .|..
T Consensus       168 ~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~--kV~~  245 (404)
T KOG1409|consen  168 AFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND--KVQA  245 (404)
T ss_pred             EEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchh--hhhh
Confidence            566666676666544  4567899999999999999999  56899999999999999964332 233344444  3667


Q ss_pred             EEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          361 LCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       361 ~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      +.+.+...   .+++++.||.|.+|++...
T Consensus       246 l~~~~~t~---~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  246 LSYAQHTR---QLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             hhhhhhhe---eeeeccCCCeEEEEeccce
Confidence            76666555   7999999999999998753

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.06  E-value=1.8e-08  Score=87.49  Aligned_cols=237  Identities=10%  Similarity=0.184  Sum_probs=153.9

Q ss_pred             ceeecceEEeeEec--CcEEEecCCCeEEEEECCCC----cEEEEEecCCc------------CCEEEEEecCCC--CEE
Q 016224          106 AVIKTDILCRNWVQ--GNCMYGEKCKFLHSWTVGDG----FKLLTQLEGHQ------------KVVSGITLPSGS--DKL  165 (393)
Q Consensus       106 ~~~~~~i~c~~~~~--~~~~~g~~dg~i~vwd~~~~----~~~~~~l~~h~------------~~I~~i~~s~~~--~~l  165 (393)
                      .....-|.|+.|..  +.+++|..+|.|.++.-+..    +.....++.|.            ..|..|.|.+++  ..+
T Consensus        22 vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F  101 (433)
T KOG1354|consen   22 VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF  101 (433)
T ss_pred             echhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence            33344678888864  45778999999999975433    22555666664            568889997755  466


Q ss_pred             EEEeCCCcEEEEECCCCeEEE---------------EEec------C----------------CceEE--EEeCCCEEEE
Q 016224          166 YSGSKDETVRVWDCASGQCAG---------------VINL------G----------------GEVGC--MISEGPWIFI  206 (393)
Q Consensus       166 ~s~s~dg~v~iwd~~~~~~~~---------------~~~~------~----------------~~~~~--~~~~~~~l~~  206 (393)
                      +....|.+|++|.+.......               .++.      .                -.+.+  +-++...+++
T Consensus       102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS  181 (433)
T KOG1354|consen  102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS  181 (433)
T ss_pred             EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence            777889999999886432111               0100      0                01111  1246777777


Q ss_pred             EcCCeEEEEECCCCc-e---eee-----cCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceee-----
Q 016224          207 GVTNFVKAWNTQTNT-D---LSL-----SGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASL-----  269 (393)
Q Consensus       207 ~~~~~i~v~d~~~~~-~---~~~-----~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~-----  269 (393)
                      +.|=.|.+|+++--. .   +-+     .....-|++..|+|.   .|+-.+..|+|++.|++....+-.....+     
T Consensus       182 ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped  261 (433)
T KOG1354|consen  182 ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED  261 (433)
T ss_pred             ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence            788899999986432 1   122     223345788889886   88889999999999999654321111111     


Q ss_pred             -------cCceeeEEEEEEc--CCEEEEecCCCcEEEeeC-CCcceeeEeccCcc------------ce---EEEEEcCC
Q 016224          270 -------KGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNL-ETLQCIQTLTEHTS------------VV---MSLLCWDQ  324 (393)
Q Consensus       270 -------~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~-~~~~~~~~~~~~~~------------~v---~~l~~~~~  324 (393)
                             .+--..|..+.|+  |+++++-. --+|++||+ ...+++.+++.|..            .|   ..++|+|+
T Consensus       262 p~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~  340 (433)
T KOG1354|consen  262 PSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN  340 (433)
T ss_pred             CcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence                   1112345666665  56777654 368999999 45677777776642            12   45667755


Q ss_pred             --EEEEEeCCCcEEEEEcCCC
Q 016224          325 --FLLSCSLDKTIKVWFATDS  343 (393)
Q Consensus       325 --~l~s~s~dg~i~iwd~~~~  343 (393)
                        +++||+....++++++..+
T Consensus       341 ~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  341 DSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             cceEecccccceEEEecCCCC
Confidence              9999999999999995433

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.06  E-value=8.6e-08  Score=91.62  Aligned_cols=206  Identities=12%  Similarity=0.016  Sum_probs=130.6

Q ss_pred             CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC---CCcEEEEECCCCeEEEEEecCCc--eEEEEeCCCE
Q 016224          129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK---DETVRVWDCASGQCAGVINLGGE--VGCMISEGPW  203 (393)
Q Consensus       129 g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~  203 (393)
                      ..|.+||.+..  ..+.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++..........  ...+.++++.
T Consensus       182 ~~l~~~d~dg~--~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        182 KRLAIMDQDGA--NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             eEEEEECCCCC--CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence            47888887544  44556678889999999999999988764   46899999998876544333332  2345678887


Q ss_pred             EEEE--cCC--eEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEe-CCC--cEEEEEeccCCccccCceeecCcee
Q 016224          204 IFIG--VTN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT-QDG--AILAWKFNVTTNCFEPAASLKGHSL  274 (393)
Q Consensus       204 l~~~--~~~--~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~-~dg--~I~vwd~~~~~~~~~~~~~~~~~~~  274 (393)
                      |+..  .++  .|.+||+.++....+..+........|+|+  .|+..+ .+|  .|+++|+..+..     ..+..+..
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-----~~lt~~~~  334 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-----RRISFGGG  334 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-----EEeecCCC
Confidence            6543  333  688889999887777777767778899988  555444 444  577777665421     22221222


Q ss_pred             eEEE--EEEcCCEEEEecCC---CcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCC------CcEEEEEcC
Q 016224          275 AVVS--LVVGANKLYSGSMD---NSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD------KTIKVWFAT  341 (393)
Q Consensus       275 ~v~~--l~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d------g~i~iwd~~  341 (393)
                      .+..  ++.++++|+....+   ..|.+||+.++.. ..+.. ...+....|+  +++|+..+.+      ..|.++|+.
T Consensus       335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~  412 (435)
T PRK05137        335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT  412 (435)
T ss_pred             cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence            2333  44467777665433   3688899865443 33332 2234556666  5666654432      257777775


Q ss_pred             CC
Q 016224          342 DS  343 (393)
Q Consensus       342 ~~  343 (393)
                      ..
T Consensus       413 g~  414 (435)
T PRK05137        413 GR  414 (435)
T ss_pred             CC
Confidence            43

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.05  E-value=3.3e-08  Score=83.21  Aligned_cols=130  Identities=14%  Similarity=0.252  Sum_probs=88.7

Q ss_pred             CcEEEEEeccCCccccCceeec-CceeeEEEEEEcC--CEE--EEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc-
Q 016224          249 GAILAWKFNVTTNCFEPAASLK-GHSLAVVSLVVGA--NKL--YSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-  322 (393)
Q Consensus       249 g~I~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~~--~~l--~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-  322 (393)
                      +...+|.++....   +...+. ....+|.+++|++  +.|  +.|..+..|.+||++ ++.+..+.  ...+..+.|+ 
T Consensus        37 ~~~~l~~~~~~~~---~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP  110 (194)
T PF08662_consen   37 GEFELFYLNEKNI---PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP  110 (194)
T ss_pred             eeEEEEEEecCCC---ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC
Confidence            3455666644432   222222 2344699999974  454  345567899999997 67777764  4567888888 


Q ss_pred             -CCEEEEEeC---CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeC------CCeEEEEeCCcee
Q 016224          323 -DQFLLSCSL---DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN------DNSVRFYDLPSVI  391 (393)
Q Consensus       323 -~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~------dg~I~iwd~~s~~  391 (393)
                       |++|++++.   .|.|.+||.++.+.+....    ...+..+.|+|++.   +|+++..      |+.++||++....
T Consensus       111 ~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~WsPdGr---~~~ta~t~~r~~~dng~~Iw~~~G~~  182 (194)
T PF08662_consen  111 DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWSPDGR---YLATATTSPRLRVDNGFKIWSFQGRL  182 (194)
T ss_pred             CCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEcCCCC---EEEEEEeccceeccccEEEEEecCeE
Confidence             689988875   4679999998655543322    22478899998877   8888764      7899999986443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.03  E-value=2.8e-08  Score=86.81  Aligned_cols=187  Identities=21%  Similarity=0.237  Sum_probs=125.6

Q ss_pred             cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCC
Q 016224          150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPV  229 (393)
Q Consensus       150 ~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~  229 (393)
                      +..+..++|++.-..+|++..|-.|++||-.. ++...++                                    ....
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lk------------------------------------s~sQ  140 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLK------------------------------------SVSQ  140 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceec------------------------------------chhh
Confidence            34677788888777788888888899888655 2222221                                    2235


Q ss_pred             CcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccC----------ceeecCceeeEEEEEEc--CCEEEEec-CCC
Q 016224          230 GQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEP----------AASLKGHSLAVVSLVVG--ANKLYSGS-MDN  293 (393)
Q Consensus       230 ~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~----------~~~~~~~~~~v~~l~~~--~~~l~sg~-~dg  293 (393)
                      ..|++++|-|.   .|++|+..| |.+|...........          +....+| ..|+++.|+  +..+++++ .|.
T Consensus       141 rnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gss  218 (445)
T KOG2139|consen  141 RNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSS  218 (445)
T ss_pred             cceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcc
Confidence            67899999876   788887665 889976543221111          1223344 688999996  55777777 467


Q ss_pred             cEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCc
Q 016224          294 SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP  371 (393)
Q Consensus       294 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  371 (393)
                      .|.|||..++..+.-..-..+.+.-+.|+  +++|+++.-|+..++|........+.....  ...+..-+|+|.+.  .
T Consensus       219 si~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg--sgrvqtacWspcGs--f  294 (445)
T KOG2139|consen  219 SIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG--SGRVQTACWSPCGS--F  294 (445)
T ss_pred             eEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc--CCceeeeeecCCCC--E
Confidence            99999999988766554456677888888  679999999999999965433222222211  22688889998865  2


Q ss_pred             EEEEEeCC
Q 016224          372 VLLCSCND  379 (393)
Q Consensus       372 ~l~s~s~d  379 (393)
                      +|++.+..
T Consensus       295 LLf~~sgs  302 (445)
T KOG2139|consen  295 LLFACSGS  302 (445)
T ss_pred             EEEEEcCC
Confidence            44554433

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=4.3e-08  Score=93.56  Aligned_cols=208  Identities=13%  Similarity=0.073  Sum_probs=124.7

Q ss_pred             eecceEEeeEecCc--EEEec---CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEE-EEeCCC--cEEEEEC
Q 016224          108 IKTDILCRNWVQGN--CMYGE---KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDE--TVRVWDC  179 (393)
Q Consensus       108 ~~~~i~c~~~~~~~--~~~g~---~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~-s~s~dg--~v~iwd~  179 (393)
                      +...+....|++++  +++.+   ....|++||+.++ +. ..+..+.....+.+|+||++.|+ +.+.+|  .|.+||+
T Consensus       202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g-~~-~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~  279 (433)
T PRK04922        202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATG-QR-ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL  279 (433)
T ss_pred             CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCC-CE-EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence            44577888999874  44444   3347999999877 32 23333445556789999998775 555665  5999999


Q ss_pred             CCCeEEEEEecCC--ceEEEEeCCCEEEEEc--CC--eEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCC-C-
Q 016224          180 ASGQCAGVINLGG--EVGCMISEGPWIFIGV--TN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQD-G-  249 (393)
Q Consensus       180 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~--~~--~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~d-g-  249 (393)
                      .+++.........  ....+.++++.++...  ++  .|.++++.+++...+..........+|+|+  .++..+.+ + 
T Consensus       280 ~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~  359 (433)
T PRK04922        280 GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQ  359 (433)
T ss_pred             CCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCc
Confidence            9887654333222  1235567888777553  23  577778877765544433344556889887  55554433 2 


Q ss_pred             -cEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecC---CCcEEEeeCCCcceeeEeccCccceEEEEEc
Q 016224          250 -AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSM---DNSIRVWNLETLQCIQTLTEHTSVVMSLLCW  322 (393)
Q Consensus       250 -~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~  322 (393)
                       .|.+||+.++..  ..+.  .+....-..++.++++++..+.   ...|.++|+. +.....+..+.+.+...+|+
T Consensus       360 ~~I~v~d~~~g~~--~~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~ws  431 (433)
T PRK04922        360 YRIAVMDLSTGSV--RTLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWS  431 (433)
T ss_pred             eeEEEEECCCCCe--EECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccC
Confidence             589999876532  1111  1111111234455776665554   3468888885 44455565555555555544

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.01  E-value=1.9e-09  Score=92.82  Aligned_cols=217  Identities=11%  Similarity=0.069  Sum_probs=145.9

Q ss_pred             EEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceE--EEEeCCCEEEEE--cCCeEEEEECCCCcee-eecCCCC
Q 016224          156 ITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG--CMISEGPWIFIG--VTNFVKAWNTQTNTDL-SLSGPVG  230 (393)
Q Consensus       156 i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~--~~~~i~v~d~~~~~~~-~~~~~~~  230 (393)
                      ..|||+|+++|+++.- .+.|-|.++-+..+.+..-..+.  -+..+..+++++  .++.|.+|++...+-. .+.....
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a   92 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA   92 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCC
Confidence            5799999999999876 78888888776655444333332  233566666665  6779999999988876 7788888


Q ss_pred             cEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCC---cEEEeeCCCcc
Q 016224          231 QVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDN---SIRVWNLETLQ  304 (393)
Q Consensus       231 ~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg---~i~iwd~~~~~  304 (393)
                      .+.+++|+|+   +|.+...+-+|.+|.+.+....   ......|.....++..++++.+..+.-.   .+.|......+
T Consensus        93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~---~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~  169 (447)
T KOG4497|consen   93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY---LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI  169 (447)
T ss_pred             cceeeeECCCcceEeeeecceeEEEEEEeccceeE---EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence            9999999998   7888889999999999886421   1122234444555555677766665421   22333333445


Q ss_pred             eeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEE
Q 016224          305 CIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRF  384 (393)
Q Consensus       305 ~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~i  384 (393)
                      .+..++..+-..+.+.|+++       +..+.+||.--..++   .......++..+.|+|.++   +|+.|+.|+.+|+
T Consensus       170 ll~~f~~dT~DltgieWsPd-------g~~laVwd~~Leykv---~aYe~~lG~k~v~wsP~~q---flavGsyD~~lrv  236 (447)
T KOG4497|consen  170 LLKEFKLDTIDLTGIEWSPD-------GNWLAVWDNVLEYKV---YAYERGLGLKFVEWSPCNQ---FLAVGSYDQMLRV  236 (447)
T ss_pred             HHHhcCCCcccccCceECCC-------CcEEEEecchhhhee---eeeeeccceeEEEeccccc---eEEeeccchhhhh
Confidence            56666666666788888743       345667774322221   1222234577888888766   9999999999998


Q ss_pred             EeCCc
Q 016224          385 YDLPS  389 (393)
Q Consensus       385 wd~~s  389 (393)
                      -+--+
T Consensus       237 lnh~t  241 (447)
T KOG4497|consen  237 LNHFT  241 (447)
T ss_pred             hceee
Confidence            66433

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.01  E-value=4.2e-08  Score=83.45  Aligned_cols=148  Identities=14%  Similarity=0.170  Sum_probs=102.3

Q ss_pred             EEEEEeCCCcEEEEEeccCCcc--ccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcce--eeEeccCcc
Q 016224          241 LLFAGTQDGAILAWKFNVTTNC--FEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQC--IQTLTEHTS  314 (393)
Q Consensus       241 ~l~~~~~dg~I~vwd~~~~~~~--~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~~~~  314 (393)
                      .++-+...|.|.++........  ++++...+-......++.|+  +..++++-.+|.+.+-+.....+  +++++.|.-
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~  166 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF  166 (339)
T ss_pred             eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce
Confidence            6677778888988876543211  11111111111122344443  66899999999999777665544  448899999


Q ss_pred             ceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          315 VVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       315 ~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      ......|+   ++.+.+|+.|+.+..||++..+.........+..+|.++..+|.  ...+|+||+.|..|++||.++.
T Consensus       167 E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~--~~~~I~TGsYDe~i~~~DtRnm  243 (339)
T KOG0280|consen  167 EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPP--KPTYIATGSYDECIRVLDTRNM  243 (339)
T ss_pred             eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCC--CCceEEEeccccceeeeehhcc
Confidence            99988887   67999999999999999995553322223334456888877765  3459999999999999999854

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.00  E-value=1.4e-07  Score=89.78  Aligned_cols=197  Identities=13%  Similarity=0.027  Sum_probs=121.6

Q ss_pred             CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC---CcEEEEECCCCeEEEEEecCCc--eEEEEeCCC
Q 016224          128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCASGQCAGVINLGGE--VGCMISEGP  202 (393)
Q Consensus       128 dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~  202 (393)
                      ...|.++|....  ..+.+..+...+...+|+||+++|+.+..+   ..|.+||+.+++..........  ...+.++++
T Consensus       169 ~~~l~~~d~~g~--~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       169 RYELQVADYDGA--NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGS  246 (417)
T ss_pred             cceEEEEcCCCC--CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC
Confidence            346888887543  234455577789999999999999987654   4799999998865544433322  234557887


Q ss_pred             EEEEE--cC--CeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEe-CCC--cEEEEEeccCCccccCceeecCce
Q 016224          203 WIFIG--VT--NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT-QDG--AILAWKFNVTTNCFEPAASLKGHS  273 (393)
Q Consensus       203 ~l~~~--~~--~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~-~dg--~I~vwd~~~~~~~~~~~~~~~~~~  273 (393)
                      .++..  .+  ..|++|++.++....+..+........|+++  .|+..+ .++  .|+++|+..+.     ...+..+.
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-----~~~l~~~~  321 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-----VRRLTFRG  321 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-----EEEeecCC
Confidence            66643  23  3699999998877666655555556788887  554443 344  46667765542     12222222


Q ss_pred             eeEEEEEE--cCCEEEEecCCC---cEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCC
Q 016224          274 LAVVSLVV--GANKLYSGSMDN---SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDK  333 (393)
Q Consensus       274 ~~v~~l~~--~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg  333 (393)
                      .......+  ++++++..+.++   .|.+||+.++.. ..+.... ......|+  +++|+..+.++
T Consensus       322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~-~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTG-LDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCC-CCCCceECCCCCEEEEEEeCC
Confidence            33334444  567777777665   789999987543 3332221 22233444  66776666543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=4.4e-07  Score=83.79  Aligned_cols=265  Identities=10%  Similarity=0.093  Sum_probs=157.3

Q ss_pred             eEEeeEecCc-EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEE-----eCC-----CcEEEEECC
Q 016224          112 ILCRNWVQGN-CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG-----SKD-----ETVRVWDCA  180 (393)
Q Consensus       112 i~c~~~~~~~-~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~-----s~d-----g~v~iwd~~  180 (393)
                      ....++++++ ++.-+.+..+.|++.... ..+.+...-  .++++.|+|-+.+|.|=     ..+     ..+++|+++
T Consensus        37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~-~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve  113 (566)
T KOG2315|consen   37 CNVFAYSNNGRLFAYSDNQVVKVFEIATL-KVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE  113 (566)
T ss_pred             ceeEEEcCCCcEEEEEcCCeEEEEEccCC-cEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeeec
Confidence            4455666664 556677788999998887 333333322  78999999999998763     122     357799999


Q ss_pred             CCeEEEEEecCCce--EEEEeCCCEEEE-EcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC----EEEE-----EeCC
Q 016224          181 SGQCAGVINLGGEV--GCMISEGPWIFI-GVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFA-----GTQD  248 (393)
Q Consensus       181 ~~~~~~~~~~~~~~--~~~~~~~~~l~~-~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~----~l~~-----~~~d  248 (393)
                      ++.....+......  ..-++....+++ -..+.+++|+....+...-.-|...|..+.++|.    .+++     .+.-
T Consensus       114 t~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaP  193 (566)
T KOG2315|consen  114 TGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAP  193 (566)
T ss_pred             cceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCC
Confidence            86555544433222  111122222222 3555677777666444433344555555555543    2222     1222


Q ss_pred             CcEEEEEeccCCcc-----------------------------------------------------ccCceeecCceee
Q 016224          249 GAILAWKFNVTTNC-----------------------------------------------------FEPAASLKGHSLA  275 (393)
Q Consensus       249 g~I~vwd~~~~~~~-----------------------------------------------------~~~~~~~~~~~~~  275 (393)
                      ..|++|........                                                     ...... -...++
T Consensus       194 a~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~-L~k~GP  272 (566)
T KOG2315|consen  194 ASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP-LLKEGP  272 (566)
T ss_pred             cEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe-cCCCCC
Confidence            33555543310000                                                     000011 112567


Q ss_pred             EEEEEEcCC--E--EEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeC---CCcEEEEEcCCCcce
Q 016224          276 VVSLVVGAN--K--LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL---DKTIKVWFATDSGNL  346 (393)
Q Consensus       276 v~~l~~~~~--~--l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~---dg~i~iwd~~~~~~~  346 (393)
                      |.++.|+.+  .  ++-|-+--++.|||++ +.++..+  ..++-+++.|+  |++|+.++.   -|.+-|||+.+.+.+
T Consensus       273 Vhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i  349 (566)
T KOG2315|consen  273 VHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI  349 (566)
T ss_pred             ceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence            778888643  2  4456677788888876 5555555  45666777777  778877776   488999999886655


Q ss_pred             EEEEeecCCccEEEEEeeeCCCCCcEEEEEeC------CCeEEEEeCCce
Q 016224          347 EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN------DNSVRFYDLPSV  390 (393)
Q Consensus       347 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~------dg~I~iwd~~s~  390 (393)
                      ..+...    ..+-+.|+|+++   +|+|++.      |+.++||++..-
T Consensus       350 ~~~~a~----~tt~~eW~PdGe---~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  350 AKFKAA----NTTVFEWSPDGE---YFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             cccccC----CceEEEEcCCCc---EEEEEeccccEEecCCeEEEEecCc
Confidence            544432    355688888877   8888764      788999998643

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=1.9e-07  Score=89.20  Aligned_cols=205  Identities=14%  Similarity=0.091  Sum_probs=123.6

Q ss_pred             eEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC---CcEEEEECCCCeEEEEEecCCc--eEEEEeCCCEE
Q 016224          130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCASGQCAGVINLGGE--VGCMISEGPWI  204 (393)
Q Consensus       130 ~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~l  204 (393)
                      .|.++|.+.+ . .+.+..+...+...+|+|||+.|+..+.+   ..|.+||+.+++..........  ...+.++++.|
T Consensus       180 ~l~~~d~~g~-~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        180 TLQRSDYDGA-R-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEEECCCCC-C-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEE
Confidence            4777787654 3 34455677889999999999999876644   3689999998876544333322  34556788877


Q ss_pred             EEE--cCC--eEEEEECCCCceeeecCCCCcEEEEEEeCC--EE-EEEeCCC--cEEEEEeccCCccccCceeecCceee
Q 016224          205 FIG--VTN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGTQDG--AILAWKFNVTTNCFEPAASLKGHSLA  275 (393)
Q Consensus       205 ~~~--~~~--~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~~~~dg--~I~vwd~~~~~~~~~~~~~~~~~~~~  275 (393)
                      +..  .++  .|.++|+.+++...+..+........|+|+  .| ++...++  .|+++|+..+..  +.+ ...+....
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~--~~l-t~~~~~~~  334 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA--ERV-TFVGNYNA  334 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEe-ecCCCCcc
Confidence            643  333  788999999887766666666677889887  44 4444444  466666655431  111 11222222


Q ss_pred             EEEEEEcCCEEEEecC-CC--cEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeC-CC--cEEEEEcC
Q 016224          276 VVSLVVGANKLYSGSM-DN--SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL-DK--TIKVWFAT  341 (393)
Q Consensus       276 v~~l~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~-dg--~i~iwd~~  341 (393)
                      ...++.+++.|+..+. ++  .|.+||+.+++. ..+.. ........|+  +++++..+. ++  .|.++++.
T Consensus       335 ~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        335 RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             ceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            2344556777665553 33  588899988764 33321 1111233444  666665544 33  35566663

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.98  E-value=4.8e-08  Score=82.17  Aligned_cols=127  Identities=11%  Similarity=0.184  Sum_probs=88.7

Q ss_pred             EEEEECCCCcEEEEEecC-CcCCEEEEEecCCCCEEEEE--eCCCcEEEEECCCCeEEEEEecCC-ceEEEEeCCCEEEE
Q 016224          131 LHSWTVGDGFKLLTQLEG-HQKVVSGITLPSGSDKLYSG--SKDETVRVWDCASGQCAGVINLGG-EVGCMISEGPWIFI  206 (393)
Q Consensus       131 i~vwd~~~~~~~~~~l~~-h~~~I~~i~~s~~~~~l~s~--s~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~l~~  206 (393)
                      ..+|.++........+.- ..++|.+++|+|+++.||+.  ..+..|.+||++ ++.+..+.... ....+.++|+++++
T Consensus        39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~  117 (194)
T PF08662_consen   39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVL  117 (194)
T ss_pred             EEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCCceEEEECCCCCEEEE
Confidence            444444322133444433 34579999999999987654  467899999996 66666665432 23455689998887


Q ss_pred             Ec----CCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeC------CCcEEEEEeccC
Q 016224          207 GV----TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ------DGAILAWKFNVT  259 (393)
Q Consensus       207 ~~----~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~------dg~I~vwd~~~~  259 (393)
                      +.    .|.|.+||.++.+.+....|. .+..++|+|+  +|++++.      |..++||++...
T Consensus       118 ~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  118 AGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             EEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            52    457999999988877655555 4789999999  7776654      788899998643

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.98  E-value=4.3e-08  Score=86.83  Aligned_cols=153  Identities=16%  Similarity=0.195  Sum_probs=108.3

Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEECCCCe----EEEEEecCCce--EEEE-eCCCEEEEE---cCCeEEEEECCCCceee
Q 016224          155 GITLPSGSDKLYSGSKDETVRVWDCASGQ----CAGVINLGGEV--GCMI-SEGPWIFIG---VTNFVKAWNTQTNTDLS  224 (393)
Q Consensus       155 ~i~~s~~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~~--~~~~-~~~~~l~~~---~~~~i~v~d~~~~~~~~  224 (393)
                      .+..++++++||.+..+....++++....    ...........  ..+. .+...+++-   ....+.+|....+....
T Consensus        67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~  146 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP  146 (390)
T ss_pred             ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcch
Confidence            34456677777777777666666654432    33333333222  2222 344444443   33466777777677778


Q ss_pred             ecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC-EEEEecCCCcEEEeeCC
Q 016224          225 LSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN-KLYSGSMDNSIRVWNLE  301 (393)
Q Consensus       225 ~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~l~sg~~dg~i~iwd~~  301 (393)
                      +.+|...++.+++++|  +++++..|..|++-.+....   ....-..+|...|..++.-.+ .|++++.|++|++||++
T Consensus       147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f---~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~  223 (390)
T KOG3914|consen  147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF---VIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDIT  223 (390)
T ss_pred             hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc---chhhhccccHhheeeeeeccCceeeecCCCCcEEEEecc
Confidence            8999999999999998  99999999999998766542   333445689999999998755 57999999999999999


Q ss_pred             CcceeeEec
Q 016224          302 TLQCIQTLT  310 (393)
Q Consensus       302 ~~~~~~~~~  310 (393)
                      +++++.++.
T Consensus       224 sgk~L~t~d  232 (390)
T KOG3914|consen  224 SGKLLDTCD  232 (390)
T ss_pred             cCCcccccc
Confidence            999987764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.96  E-value=2e-07  Score=89.12  Aligned_cols=193  Identities=10%  Similarity=-0.005  Sum_probs=119.7

Q ss_pred             eeecceEEeeEecCc--EEEec---CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEE-EEeCCCc--EEEEE
Q 016224          107 VIKTDILCRNWVQGN--CMYGE---KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDET--VRVWD  178 (393)
Q Consensus       107 ~~~~~i~c~~~~~~~--~~~g~---~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~-s~s~dg~--v~iwd  178 (393)
                      .+...+.+..|++++  +++.+   .+..|++||+.++ +. ..+..+...+...+|+|||+.|+ +.+.++.  |.+||
T Consensus       199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g-~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d  276 (435)
T PRK05137        199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG-QR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMD  276 (435)
T ss_pred             cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC-cE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEE
Confidence            455688999999884  34433   3568999999887 33 34555677788899999998775 5566655  77779


Q ss_pred             CCCCeEEEEEecCCc--eEEEEeCCCEEEEEcC----CeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCC--
Q 016224          179 CASGQCAGVINLGGE--VGCMISEGPWIFIGVT----NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQD--  248 (393)
Q Consensus       179 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~----~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~d--  248 (393)
                      +.+++..........  ...+.++++.++...+    ..|.++|+.++....+......+....|+|+  .|+....+  
T Consensus       277 ~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~  356 (435)
T PRK05137        277 LRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGG  356 (435)
T ss_pred             CCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCC
Confidence            888776543333221  2445678887765432    2788899888776655555556677889988  55554432  


Q ss_pred             -CcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCC------CcEEEeeCCCcce
Q 016224          249 -GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD------NSIRVWNLETLQC  305 (393)
Q Consensus       249 -g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d------g~i~iwd~~~~~~  305 (393)
                       ..|.+||+..+..  ..+.  ......-..++.+++.|+..+.+      ..|.++|+..+..
T Consensus       357 ~~~i~~~d~~~~~~--~~lt--~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        357 QFSIGVMKPDGSGE--RILT--SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             ceEEEEEECCCCce--Eecc--CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence             3577888754321  1111  11211222344456666554332      3577888765443

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.96  E-value=1.4e-09  Score=99.69  Aligned_cols=213  Identities=16%  Similarity=0.218  Sum_probs=143.2

Q ss_pred             EEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCC
Q 016224          142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG-QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN  220 (393)
Q Consensus       142 ~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~  220 (393)
                      .+..+.+|+..|..++--.+.+-+++++.|++|++|.+... ..+.+                               ..
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~t-------------------------------sa  775 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGT-------------------------------SA  775 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccc-------------------------------ce
Confidence            34577899999999988778889999999999999998642 11110                               01


Q ss_pred             ceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCce-eecCceeeEEEEEE-cCCEEEEe-cCCCcEEE
Q 016224          221 TDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAA-SLKGHSLAVVSLVV-GANKLYSG-SMDNSIRV  297 (393)
Q Consensus       221 ~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~-~~~~~~~~v~~l~~-~~~~l~sg-~~dg~i~i  297 (393)
                      ...+...|..+|.++.|-.+.-..++.||.|.+||.-.+....+... .-.+..+.|.++.- +...+++| +...+|++
T Consensus       776 CQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl  855 (1034)
T KOG4190|consen  776 CQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKL  855 (1034)
T ss_pred             eeeEhhhccCcccceeeeeccceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhhee
Confidence            12366789999999999888656667799999999766532111111 11223345566543 33444444 78899999


Q ss_pred             eeCCCcceeeEecc-----CccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCC
Q 016224          298 WNLETLQCIQTLTE-----HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGK  370 (393)
Q Consensus       298 wd~~~~~~~~~~~~-----~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  370 (393)
                      +|.+.++....++.     ....+.+++..  |+.++++-..|.|.+.|.+++..+.......-+  .+.++    .+..
T Consensus       856 ~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecd--llqla----apsd  929 (1034)
T KOG4190|consen  856 FDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECD--LLQLA----APSD  929 (1034)
T ss_pred             eecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccch--hhhhc----Cchh
Confidence            99999887776653     34556666665  889999999999999999988765544332222  33332    2223


Q ss_pred             cEEEEEeCCCeEEE-EeCCcee
Q 016224          371 PVLLCSCNDNSVRF-YDLPSVI  391 (393)
Q Consensus       371 ~~l~s~s~dg~I~i-wd~~s~~  391 (393)
                      +.|+....|.++.+ |..-++.
T Consensus       930 q~L~~saldHslaVnWhaldgi  951 (1034)
T KOG4190|consen  930 QALAQSALDHSLAVNWHALDGI  951 (1034)
T ss_pred             HHHHhhcccceeEeeehhcCCe
Confidence            36676667777777 7655543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.94  E-value=1.2e-05  Score=74.48  Aligned_cols=229  Identities=14%  Similarity=0.182  Sum_probs=139.0

Q ss_pred             EEeeEecCc--EEEec----CCCeEEEEECCC--C-cEEEEEecCCcCCEEEEEecCCCCEEEEEeC-CCcEEEEECCC-
Q 016224          113 LCRNWVQGN--CMYGE----KCKFLHSWTVGD--G-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCAS-  181 (393)
Q Consensus       113 ~c~~~~~~~--~~~g~----~dg~i~vwd~~~--~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~-dg~v~iwd~~~-  181 (393)
                      ..+.+++++  +++..    ..+.|..|.+..  + .+.+.+.......-..++++|++++|+++.. +|.|.++++.. 
T Consensus        40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~  119 (345)
T PF10282_consen   40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD  119 (345)
T ss_dssp             CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC
Confidence            455665542  33322    467898888765  3 2344444434456667999999999999874 89999999987 


Q ss_pred             CeEEEE---Eec-----------CCc--eEEEEeCCCEEEEE--cCCeEEEEECCCCc--ee---e-ecCCCCcEEEEEE
Q 016224          182 GQCAGV---INL-----------GGE--VGCMISEGPWIFIG--VTNFVKAWNTQTNT--DL---S-LSGPVGQVYAMAV  237 (393)
Q Consensus       182 ~~~~~~---~~~-----------~~~--~~~~~~~~~~l~~~--~~~~i~v~d~~~~~--~~---~-~~~~~~~v~~l~~  237 (393)
                      +.....   +..           ...  ...+.++++++++.  ..+.|.+|++....  ..   . ..........+.|
T Consensus       120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f  199 (345)
T PF10282_consen  120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF  199 (345)
T ss_dssp             SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE
T ss_pred             cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE
Confidence            443332   211           112  23445788988886  44589999997765  21   1 2345567889999


Q ss_pred             eCC---EEEEEeCCCcEEEEEeccCCccccCceeecCc------eeeEEE--EEEcCCEEEEe-cCCCcEEEeeCC--Cc
Q 016224          238 GND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGH------SLAVVS--LVVGANKLYSG-SMDNSIRVWNLE--TL  303 (393)
Q Consensus       238 ~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~------~~~v~~--l~~~~~~l~sg-~~dg~i~iwd~~--~~  303 (393)
                      +++   .+++.-.++.|.++++......++.+......      ......  ++.++++|+++ ..++.|.+|++.  ++
T Consensus       200 ~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g  279 (345)
T PF10282_consen  200 SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG  279 (345)
T ss_dssp             -TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT
T ss_pred             cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC
Confidence            998   45566678889999998433222222222111      112334  44457776654 467899999983  23


Q ss_pred             --ceeeEeccCccceEEEEEc--CCEEEEEe-CCCcEEEEEcC
Q 016224          304 --QCIQTLTEHTSVVMSLLCW--DQFLLSCS-LDKTIKVWFAT  341 (393)
Q Consensus       304 --~~~~~~~~~~~~v~~l~~~--~~~l~s~s-~dg~i~iwd~~  341 (393)
                        +.+..+......-..+.++  +++|+++. .++.|.+|++.
T Consensus       280 ~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  280 TLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             TEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             ceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence              3344444333445677775  78888776 56789999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.94  E-value=2.9e-08  Score=83.01  Aligned_cols=189  Identities=19%  Similarity=0.245  Sum_probs=124.3

Q ss_pred             ceEEeeEecCc-EEEecCCCeEEEEECC-----------CCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEE
Q 016224          111 DILCRNWVQGN-CMYGEKCKFLHSWTVG-----------DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (393)
Q Consensus       111 ~i~c~~~~~~~-~~~g~~dg~i~vwd~~-----------~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd  178 (393)
                      .+..+.++.+. ++.+..++.+......           .+....+.+..|+++=.+-+.+--++.++++..||.+.+++
T Consensus        38 ~~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s  117 (319)
T KOG4714|consen   38 KLSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS  117 (319)
T ss_pred             EEEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence            36666666553 4456666655554433           22233444444554444444444567899999999999999


Q ss_pred             CCCCe----EEEEEecCCceEEEEeCCCEEEEE------cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC---EEEE
Q 016224          179 CASGQ----CAGVINLGGEVGCMISEGPWIFIG------VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFA  244 (393)
Q Consensus       179 ~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~------~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~  244 (393)
                      .+.-.    .+..........+....+.++.++      .-+..+.|+++..+.+ ........|.+++-+|.   ++++
T Consensus       118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~c  197 (319)
T KOG4714|consen  118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCC  197 (319)
T ss_pred             chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEE
Confidence            76521    111222222333444555555554      3346677777766554 22223334888888876   8999


Q ss_pred             EeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CCEEEEecCCCcEEEeeCCC
Q 016224          245 GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLET  302 (393)
Q Consensus       245 ~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~  302 (393)
                      |+.||.+-+||.+...   -+...+..|..++..+.|.   +..|+++++||.+..||..+
T Consensus       198 gt~dg~~~l~d~rn~~---~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  198 GTDDGIVGLWDARNVA---MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ecCCCeEEEEEccccc---chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            9999999999999874   5567788899999999986   56899999999999999875

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.93  E-value=2.4e-07  Score=88.65  Aligned_cols=226  Identities=12%  Similarity=0.001  Sum_probs=127.5

Q ss_pred             eEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC-C--cEEEEECCCCeEEEEEecCC--ceEEEEeCCCEE
Q 016224          130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD-E--TVRVWDCASGQCAGVINLGG--EVGCMISEGPWI  204 (393)
Q Consensus       130 ~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d-g--~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~l  204 (393)
                      .|.++|.+.. .. +.+..+...+.+..|+|||+.|+..+.+ +  .|.+||+.+++.........  ....+.++++.|
T Consensus       199 ~l~i~d~dG~-~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYDGY-NE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCCCC-Cc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEE
Confidence            6677776544 22 3455567788999999999998876543 2  58889998886544332222  234566788877


Q ss_pred             EEE--cCC--eEEEEECCCCceeeecCCCCcEEEEEEeCC--EE-EEEeCCCc--EEEEEeccCCccccCceeecCceee
Q 016224          205 FIG--VTN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGTQDGA--ILAWKFNVTTNCFEPAASLKGHSLA  275 (393)
Q Consensus       205 ~~~--~~~--~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~~~~dg~--I~vwd~~~~~~~~~~~~~~~~~~~~  275 (393)
                      +..  .++  .|.++|+.+++...+..+........|+|+  .| ++...++.  |+++|+.++..  +.+ ...++...
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~--~~L-t~~g~~~~  353 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV--SRL-TFEGEQNL  353 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEE-ecCCCCCc
Confidence            643  344  588889998887766666666778889988  44 44444555  55555554421  111 12222221


Q ss_pred             EEEEEEcCCEEEEecC-CC--cEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEe-CCCc--EEEEEcCCCcceE
Q 016224          276 VVSLVVGANKLYSGSM-DN--SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCS-LDKT--IKVWFATDSGNLE  347 (393)
Q Consensus       276 v~~l~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s-~dg~--i~iwd~~~~~~~~  347 (393)
                      -..++.++++|+..+. ++  .|.++|+.+++.. .+.... ......|+  +++|+..+ .++.  +.+++. ++....
T Consensus       354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~  430 (448)
T PRK04792        354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKA  430 (448)
T ss_pred             CeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceE
Confidence            2244556777665543 34  4566788877643 332221 11122344  66655444 3443  666666 344434


Q ss_pred             EEEeecCCccEEEEEeee
Q 016224          348 VTYTHNEEHGVLALCGMP  365 (393)
Q Consensus       348 ~~~~~~~~~~v~~~~~~~  365 (393)
                      .+.....  .+....|+|
T Consensus       431 ~l~~~~g--~~~~p~Wsp  446 (448)
T PRK04792        431 RLPAGQG--EVKSPAWSP  446 (448)
T ss_pred             ECcCCCC--CcCCCccCC
Confidence            3333222  234455544

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.92  E-value=5.4e-07  Score=75.90  Aligned_cols=223  Identities=9%  Similarity=-0.003  Sum_probs=138.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCc-e---E-EEEeCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEE
Q 016224          162 SDKLYSGSKDETVRVWDCASGQCAGVIN-LGGE-V---G-CMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYA  234 (393)
Q Consensus       162 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~-~---~-~~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~  234 (393)
                      -.+||.|+..|...+|.+.+.+....+- .... +   . ......+++.++.|.++++.++..+... ......-.+.+
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns  163 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS  163 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence            3589999999999999998765433322 1111 1   1 1123455667778888888877655433 11111133788


Q ss_pred             EEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCccee-e--
Q 016224          235 MAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCI-Q--  307 (393)
Q Consensus       235 l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~-~--  307 (393)
                      +.++++  ++++.+....|..|.+......... .........-.+.+|+  ...+|++..||++.|||++..... .  
T Consensus       164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~  242 (344)
T KOG4532|consen  164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI  242 (344)
T ss_pred             eEEcCCCceEEEecCCCcceEEEeCCccceeee-eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence            889887  8888899999999998876532111 1222222333444554  458999999999999999874332 2  


Q ss_pred             --EeccCccceEEEEEc-C---CEEEEEeCCCcEEEEEcCCCcceEEEEeecCC------ccEEEEEeeeCCCCCcEEEE
Q 016224          308 --TLTEHTSVVMSLLCW-D---QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE------HGVLALCGMPDSEGKPVLLC  375 (393)
Q Consensus       308 --~~~~~~~~v~~l~~~-~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~l~s  375 (393)
                        +-..|.+.+..+.|+ +   ++|+..-.-+.+.+.|+++....+.+......      ..+..-+|..+.+   -+.+
T Consensus       243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~---s~~v  319 (344)
T KOG4532|consen  243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE---SNDV  319 (344)
T ss_pred             cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCc---cccc
Confidence              223588999999998 2   35665556678999999998876665542221      2245555544433   3444


Q ss_pred             EeCCCeEEEEeCCc
Q 016224          376 SCNDNSVRFYDLPS  389 (393)
Q Consensus       376 ~s~dg~I~iwd~~s  389 (393)
                      .+++ .+.-|++.+
T Consensus       320 ~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  320 KNEL-QGAEYNILS  332 (344)
T ss_pred             ccch-hhheeeccc
Confidence            4443 345555443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=1.1e-07  Score=91.32  Aligned_cols=183  Identities=15%  Similarity=0.072  Sum_probs=134.9

Q ss_pred             eecceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 016224          108 IKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV  187 (393)
Q Consensus       108 ~~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~  187 (393)
                      ....++|++++...+++|+-+|.|++.+....  . .+...|+..      ..+|.+++|||.||+|.|-.+.+.+...+
T Consensus        38 ~~D~is~~av~~~~~~~GtH~g~v~~~~~~~~--~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   38 QNDAISCCAVHDKFFALGTHRGAVYLTTCQGN--P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hhhHHHHHHhhcceeeeccccceEEEEecCCc--c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            44578899999989999999999999997654  2 344446544      56899999999999999999887766544


Q ss_pred             EecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC-------EEEEEeCCCcEEEEEeccCC
Q 016224          188 INLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-------LLFAGTQDGAILAWKFNVTT  260 (393)
Q Consensus       188 ~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~-------~l~~~~~dg~I~vwd~~~~~  260 (393)
                      +.                                      ...++.+++++|+       .+++|+.-| +.++.-+--.
T Consensus       109 ~d--------------------------------------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg  149 (846)
T KOG2066|consen  109 YD--------------------------------------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG  149 (846)
T ss_pred             Ee--------------------------------------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence            42                                      3456778888887       789999888 7776433221


Q ss_pred             ccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccce------EEEEEcCCEEEEEeCCCc
Q 016224          261 NCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVV------MSLLCWDQFLLSCSLDKT  334 (393)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v------~~l~~~~~~l~s~s~dg~  334 (393)
                      .  .....+..-.++|.++.|.++++|-++.+| |++||+.+++.+..++.....+      ..+.|.+...+.-+...+
T Consensus       150 n--k~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~  226 (846)
T KOG2066|consen  150 N--KDSVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDS  226 (846)
T ss_pred             C--ccceeeecCccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCe
Confidence            1  111234556789999999999999998777 8999999988888776443333      456676554444556668


Q ss_pred             EEEEEcC
Q 016224          335 IKVWFAT  341 (393)
Q Consensus       335 i~iwd~~  341 (393)
                      |+|..++
T Consensus       227 v~i~~I~  233 (846)
T KOG2066|consen  227 VKICSIK  233 (846)
T ss_pred             EEEEEEe
Confidence            9998887

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.89  E-value=4.2e-08  Score=95.10  Aligned_cols=178  Identities=16%  Similarity=0.184  Sum_probs=138.7

Q ss_pred             CCEEEEEcCCeEEEEECCCCceeeecCC-CCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEE
Q 016224          201 GPWIFIGVTNFVKAWNTQTNTDLSLSGP-VGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSL  279 (393)
Q Consensus       201 ~~~l~~~~~~~i~v~d~~~~~~~~~~~~-~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l  279 (393)
                      ..++..|....+..+|+.+.+....... ...|.-|+.+...+++|...|+|.+-|.++-    +.++++..|++.+..+
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~----~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSF----ETIHTFDAHSGSISDF  223 (1118)
T ss_pred             cceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcC----ceeeeeeccccceeee
Confidence            3445556777888999999887744443 3358888888889999999999999998876    7889999999999999


Q ss_pred             EEcCCEEEEecC---------CCcEEEeeCCCcceeeEeccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcc--
Q 016224          280 VVGANKLYSGSM---------DNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGN--  345 (393)
Q Consensus       280 ~~~~~~l~sg~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~--  345 (393)
                      ...|+.|++++.         |..|+|||++..+.+.-+.-+.++ .-+.|.   ...+++++..|+..+-|..+...  
T Consensus       224 Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~  302 (1118)
T KOG1275|consen  224 DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP  302 (1118)
T ss_pred             eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc
Confidence            999999999874         667999999998887777655544 223333   45789999999999999543332  


Q ss_pred             eEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          346 LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       346 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                      ......+.....+.++.+++.++   .|+.|..+|.|.+|.
T Consensus       303 ~~~~~v~p~~s~i~~fDiSsn~~---alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  303 AGVKMVNPNGSGISAFDISSNGD---ALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cceeEEccCCCcceeEEecCCCc---eEEEecccCcEeeec
Confidence            23344445555588888887766   899999999999996

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.88  E-value=5.6e-09  Score=90.55  Aligned_cols=149  Identities=21%  Similarity=0.311  Sum_probs=114.6

Q ss_pred             CCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeC--CEEEEEeCCCcEEEEEeccCCcc-ccCceeecCceeeEE
Q 016224          201 GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN--DLLFAGTQDGAILAWKFNVTTNC-FEPAASLKGHSLAVV  277 (393)
Q Consensus       201 ~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~I~vwd~~~~~~~-~~~~~~~~~~~~~v~  277 (393)
                      +..+++|.+..|-+-|++++....+. ..+.|.++.|..  ++++.|+.+|.|..+|++..... ..+...+ -|...|+
T Consensus       225 gyhfs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvt  302 (425)
T KOG2695|consen  225 GYHFSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVT  302 (425)
T ss_pred             eeeecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchh
Confidence            44466788889999999998877666 677899998876  39999999999999999986322 1222222 3777887


Q ss_pred             EEE---EcCCEEEEecCCCcEEEeeCCCcce---eeEeccCccceEEEEEc----CCEEEEEeCCCcEEEEEcCCCcceE
Q 016224          278 SLV---VGANKLYSGSMDNSIRVWNLETLQC---IQTLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNLE  347 (393)
Q Consensus       278 ~l~---~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~~~  347 (393)
                      ++.   +++.+|++.+.+|+|++||++.-++   +.++.+|-..-.-+-+.    ...+++++.|...+||.++.+..+.
T Consensus       303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~  382 (425)
T KOG2695|consen  303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC  382 (425)
T ss_pred             hhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence            765   4678999999999999999998777   88888886554433332    5689999999999999998877665


Q ss_pred             EEEe
Q 016224          348 VTYT  351 (393)
Q Consensus       348 ~~~~  351 (393)
                      .+..
T Consensus       383 tipf  386 (425)
T KOG2695|consen  383 TIPF  386 (425)
T ss_pred             ccCC
Confidence            5443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.87  E-value=3.9e-07  Score=86.83  Aligned_cols=207  Identities=9%  Similarity=0.025  Sum_probs=117.5

Q ss_pred             eecceEEeeEecCc--EEEecC---CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEE-EEeCCCcEEEEE--C
Q 016224          108 IKTDILCRNWVQGN--CMYGEK---CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDETVRVWD--C  179 (393)
Q Consensus       108 ~~~~i~c~~~~~~~--~~~g~~---dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~-s~s~dg~v~iwd--~  179 (393)
                      +...+.+..|++++  +++.+.   ...|++||+.++ +.. .+......+...+|+||++.|+ +.+.+|...||.  +
T Consensus       194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g-~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~  271 (427)
T PRK02889        194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATG-RRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA  271 (427)
T ss_pred             CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCC-CEE-EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence            44577889999875  334332   346999999887 332 3333445667899999998886 567788767665  4


Q ss_pred             CCCeEEEEEecCC---ceEEEEeCCCEEEEEc--CCe--EEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCC-
Q 016224          180 ASGQCAGVINLGG---EVGCMISEGPWIFIGV--TNF--VKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDG-  249 (393)
Q Consensus       180 ~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~--~~~--i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg-  249 (393)
                      ..+.. ..+....   ....+.++++.++...  ++.  |..++..++....+...........|+|+  .|+..+.++ 
T Consensus       272 ~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g  350 (427)
T PRK02889        272 DGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGG  350 (427)
T ss_pred             CCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCC
Confidence            44443 3332221   1234667888776542  344  44445555554433322333446778887  666555443 


Q ss_pred             --cEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCC---cEEEeeCCCcceeeEeccCccceEEEEEc
Q 016224          250 --AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDN---SIRVWNLETLQCIQTLTEHTSVVMSLLCW  322 (393)
Q Consensus       250 --~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~~  322 (393)
                        .|.+||+.++..  ..+  .......-.+++.++++|+..+.++   .+.+.++ +++....+..+.+.+...+|+
T Consensus       351 ~~~I~v~d~~~g~~--~~l--t~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~ws  423 (427)
T PRK02889        351 AFKLYVQDLATGQV--TAL--TDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWG  423 (427)
T ss_pred             cEEEEEEECCCCCe--EEc--cCCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccC
Confidence              599999877632  111  1111112223444566666655433   3555566 355555565555555555554

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.87  E-value=8.5e-06  Score=74.19  Aligned_cols=222  Identities=12%  Similarity=0.089  Sum_probs=134.5

Q ss_pred             ecCCCeEEEEECCCCcEEEEEecCCc-------CCEEEEEecCCCCEEEEEe-C-CCcEEEEECCCCeEEEEEecCCceE
Q 016224          125 GEKCKFLHSWTVGDGFKLLTQLEGHQ-------KVVSGITLPSGSDKLYSGS-K-DETVRVWDCASGQCAGVINLGGEVG  195 (393)
Q Consensus       125 g~~dg~i~vwd~~~~~~~~~~l~~h~-------~~I~~i~~s~~~~~l~s~s-~-dg~v~iwd~~~~~~~~~~~~~~~~~  195 (393)
                      |-.+..|.+||+.+. +.+.++..-.       ..-..++++|||++|+... . +..|.+.|+.+++.+.++..+....
T Consensus        73 G~~~d~V~v~D~~t~-~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~  151 (352)
T TIGR02658        73 GKRTDYVEVIDPQTH-LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH  151 (352)
T ss_pred             CCCCCEEEEEECccC-cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE
Confidence            447899999999998 8887776422       2334688999999999776 3 6899999999999999998765433


Q ss_pred             EEE-eCCCEEEEEcCCeEEEEECCC-Ccee----ee-cCCCCcEEEE-EEeC-C--EEEEEeCCCcEEEEEeccCCccc-
Q 016224          196 CMI-SEGPWIFIGVTNFVKAWNTQT-NTDL----SL-SGPVGQVYAM-AVGN-D--LLFAGTQDGAILAWKFNVTTNCF-  263 (393)
Q Consensus       196 ~~~-~~~~~l~~~~~~~i~v~d~~~-~~~~----~~-~~~~~~v~~l-~~~~-~--~l~~~~~dg~I~vwd~~~~~~~~-  263 (393)
                      .+. ++..+.+...|+......+.. ++..    .+ ......+..- .|.+ +  ++++... |.|.+.|+....... 
T Consensus       152 vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~  230 (352)
T TIGR02658       152 IFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL  230 (352)
T ss_pred             EEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec
Confidence            322 333344444444333322211 1111    01 0100000000 2233 3  5555555 999999975543211 


Q ss_pred             cCceeecC-------ceee--EEEEEEcCCEEEEec----------CCCcEEEeeCCCcceeeEeccCccceEEEEEc--
Q 016224          264 EPAASLKG-------HSLA--VVSLVVGANKLYSGS----------MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--  322 (393)
Q Consensus       264 ~~~~~~~~-------~~~~--v~~l~~~~~~l~sg~----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--  322 (393)
                      .....+..       ....  ..++..++++++...          ..+.|.++|..+++.+..+.. ...+..+.++  
T Consensus       231 ~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~D  309 (352)
T TIGR02658       231 PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQD  309 (352)
T ss_pred             ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCC
Confidence            11111110       1111  244444567666532          225899999999999998874 3366777777  


Q ss_pred             CC-EEEEEe-CCCcEEEEEcCCCcceEEE
Q 016224          323 DQ-FLLSCS-LDKTIKVWFATDSGNLEVT  349 (393)
Q Consensus       323 ~~-~l~s~s-~dg~i~iwd~~~~~~~~~~  349 (393)
                      ++ +|++.. .++.|.++|..+.+.+..+
T Consensus       310 gkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       310 AKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            56 666555 6788999999888777665

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.86  E-value=1.3e-08  Score=61.43  Aligned_cols=38  Identities=37%  Similarity=0.663  Sum_probs=36.7

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEE
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd  178 (393)
                      +++.++++|.+.|++|+|+|++++|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            67889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.84  E-value=1.7e-06  Score=82.87  Aligned_cols=104  Identities=16%  Similarity=0.152  Sum_probs=78.8

Q ss_pred             EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCC-EEEEEeC----------CCcEEEEEcCCCcceEEE-Eee
Q 016224          285 KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ-FLLSCSL----------DKTIKVWFATDSGNLEVT-YTH  352 (393)
Q Consensus       285 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~s~s~----------dg~i~iwd~~~~~~~~~~-~~~  352 (393)
                      +++.|+..|+|.++|+.++.....+..|...|.++.|-|. .|++.+.          -+.+.|-|++++...... ...
T Consensus       439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~  518 (1062)
T KOG1912|consen  439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK  518 (1062)
T ss_pred             eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence            4788999999999999999999999999999999999865 3444433          244678888877543322 123


Q ss_pred             cCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          353 NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       353 ~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      ..+.++..+..+..+.   ||+..-.|.-+.+||+++..
T Consensus       519 ~despI~~irvS~~~~---yLai~Fr~~plEiwd~kt~~  554 (1062)
T KOG1912|consen  519 PDESPIRAIRVSSSGR---YLAILFRREPLEIWDLKTLR  554 (1062)
T ss_pred             CCcCcceeeeecccCc---eEEEEecccchHHHhhccch
Confidence            4455677776655444   99999999999999997654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.83  E-value=3.2e-07  Score=87.71  Aligned_cols=275  Identities=12%  Similarity=0.147  Sum_probs=171.6

Q ss_pred             EeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCC------------CCEEEEEeCCCcEEEEECCC
Q 016224          114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG------------SDKLYSGSKDETVRVWDCAS  181 (393)
Q Consensus       114 c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~------------~~~l~s~s~dg~v~iwd~~~  181 (393)
                      .+.|++.+++.-+....|.+-|..+- +.+..+..|+..|+.+.|.|.            .-+||++...|.|.+||...
T Consensus        20 A~Dw~~~GLiAygshslV~VVDs~s~-q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~   98 (1062)
T KOG1912|consen   20 AADWSPSGLIAYGSHSLVSVVDSRSL-QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL   98 (1062)
T ss_pred             ccccCccceEEEecCceEEEEehhhh-hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh
Confidence            46788888887666678888898887 899999999999999999752            13678888899999999998


Q ss_pred             CeEEEEEecCCce---EEEEe---CC-CEE-EEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC---EEEEEeCCC
Q 016224          182 GQCAGVINLGGEV---GCMIS---EG-PWI-FIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDG  249 (393)
Q Consensus       182 ~~~~~~~~~~~~~---~~~~~---~~-~~l-~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~~~~dg  249 (393)
                      +..+..++.+...   .++..   +. .+| +.....++.+|+..+|+.+ ..........++.++|-   .+..-+..|
T Consensus        99 ~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g  178 (1062)
T KOG1912|consen   99 ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKG  178 (1062)
T ss_pred             hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCc
Confidence            8887777765432   23332   33 233 3457789999999999987 55555556667888774   666667778


Q ss_pred             cEEEEEeccCCccccCceee---cCcee-------------------e------EEEEEEcCC--EEEEecCCCcEEEee
Q 016224          250 AILAWKFNVTTNCFEPAASL---KGHSL-------------------A------VVSLVVGAN--KLYSGSMDNSIRVWN  299 (393)
Q Consensus       250 ~I~vwd~~~~~~~~~~~~~~---~~~~~-------------------~------v~~l~~~~~--~l~sg~~dg~i~iwd  299 (393)
                      .+.+-+.-...+.-.+.+.+   ..|..                   .      ...++|.+.  .++-......+.++|
T Consensus       179 ~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~d  258 (1062)
T KOG1912|consen  179 FVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFD  258 (1062)
T ss_pred             eEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEc
Confidence            77777654332211111111   11111                   0      011233332  122333466799999


Q ss_pred             CCCcceeeEeccCcc--ceEEEEEc--CCEEEEEeCCCcEEEEEcCCC----------------cceEEEEeecCCccEE
Q 016224          300 LETLQCIQTLTEHTS--VVMSLLCW--DQFLLSCSLDKTIKVWFATDS----------------GNLEVTYTHNEEHGVL  359 (393)
Q Consensus       300 ~~~~~~~~~~~~~~~--~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~----------------~~~~~~~~~~~~~~v~  359 (393)
                      ++-..++.......+  ++..+...  .+.|++...||.+.||--+..                .+...+...+.. ...
T Consensus       259 le~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~  337 (1062)
T KOG1912|consen  259 LEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPV  337 (1062)
T ss_pred             chhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhc-ccc
Confidence            998888777665444  34444444  357999999999999966542                112222222211 122


Q ss_pred             EEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          360 ALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       360 ~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      .....|..+.  .++.--.+|.+.+|.+.++++
T Consensus       338 ~~~~cPs~~s--a~avl~s~g~~~~w~l~~~ri  368 (1062)
T KOG1912|consen  338 IGASCPSTPS--ALAVLYSSGDSTFWQLSNGRI  368 (1062)
T ss_pred             eeecCCCChh--hhhhhhhcchhHHHhhhcCCc
Confidence            2222333222  344445678889999987654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.82  E-value=5.1e-06  Score=80.47  Aligned_cols=264  Identities=14%  Similarity=0.154  Sum_probs=158.1

Q ss_pred             ecCcEEEecCCCeEEEEECCCCcEEEEEecCCcC------CEE--EEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 016224          118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK------VVS--GITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN  189 (393)
Q Consensus       118 ~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~------~I~--~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  189 (393)
                      ..+.+++++.++.|+-.|..++ +.+-.++....      .+.  .++.. ++..++.++.++.|.-+|.++|+.+..+.
T Consensus        60 ~~g~vy~~~~~g~l~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~  137 (488)
T cd00216          60 VDGDMYFTTSHSALFALDAATG-KVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFG  137 (488)
T ss_pred             ECCEEEEeCCCCcEEEEECCCC-hhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence            4566778888999999999998 55555443222      110  11111 22678888999999999999999998887


Q ss_pred             cCCce------E--EEEeCCCEEEEE----------cCCeEEEEECCCCcee-eecCC-C-------------------C
Q 016224          190 LGGEV------G--CMISEGPWIFIG----------VTNFVKAWNTQTNTDL-SLSGP-V-------------------G  230 (393)
Q Consensus       190 ~~~~~------~--~~~~~~~~l~~~----------~~~~i~v~d~~~~~~~-~~~~~-~-------------------~  230 (393)
                      .....      .  ....+ .+++++          .++.+..+|..+++.+ ..... .                   .
T Consensus       138 ~~~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~  216 (488)
T cd00216         138 NNDQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG  216 (488)
T ss_pred             CCCCcCcceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence            65441      1  11223 444443          2568899999999876 32211 1                   0


Q ss_pred             cE-EEEEEe--CCEEEEEeCCC------------------cEEEEEeccCCccccCceee------cCceee-EEEEE-E
Q 016224          231 QV-YAMAVG--NDLLFAGTQDG------------------AILAWKFNVTTNCFEPAASL------KGHSLA-VVSLV-V  281 (393)
Q Consensus       231 ~v-~~l~~~--~~~l~~~~~dg------------------~I~vwd~~~~~~~~~~~~~~------~~~~~~-v~~l~-~  281 (393)
                      .+ ....++  .+.+++++.++                  .|..+|..+++..++.....      .....+ +..+. .
T Consensus       217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~  296 (488)
T cd00216         217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK  296 (488)
T ss_pred             CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence            01 123343  34788887665                  78899998886544321110      111111 11121 3


Q ss_pred             cCC---EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCCEEEEE------------------eCCCcEEEEEc
Q 016224          282 GAN---KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSC------------------SLDKTIKVWFA  340 (393)
Q Consensus       282 ~~~---~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~------------------s~dg~i~iwd~  340 (393)
                      ++.   .++.++.+|.+...|.++|+.+.......   ..+..++..++.+                  ..+|.|.-.|+
T Consensus       297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~  373 (488)
T cd00216         297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP  373 (488)
T ss_pred             CCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeC
Confidence            443   58888999999999999999887764221   1122223333332                  24678888888


Q ss_pred             CCCcceEEEEeecCC------ccE--EEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          341 TDSGNLEVTYTHNEE------HGV--LALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       341 ~~~~~~~~~~~~~~~------~~v--~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      .+++.+-........      ...  ..+.    . .+.+|+.++.||.|+.+|..+|++
T Consensus       374 ~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~----~-~g~~v~~g~~dG~l~ald~~tG~~  428 (488)
T cd00216         374 KTGKVVWEKREGTIRDSWNIGFPHWGGSLA----T-AGNLVFAGAADGYFRAFDATTGKE  428 (488)
T ss_pred             CCCcEeeEeeCCccccccccCCcccCcceE----e-cCCeEEEECCCCeEEEEECCCCce
Confidence            888765554432100      000  0111    1 122788889999999999999976

The alignment model contains an 8-bladed beta-propeller.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.81  E-value=6.6e-07  Score=85.22  Aligned_cols=201  Identities=13%  Similarity=0.063  Sum_probs=120.0

Q ss_pred             cceEEeeEecCc--EEEec---CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEE-EeCCC--cEEEEECCC
Q 016224          110 TDILCRNWVQGN--CMYGE---KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYS-GSKDE--TVRVWDCAS  181 (393)
Q Consensus       110 ~~i~c~~~~~~~--~~~g~---~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s-~s~dg--~v~iwd~~~  181 (393)
                      ..+....|++++  +++..   ....|++||+.++ +.. .+..+...+.+++|+||++.|+. .+.++  .|.+||+.+
T Consensus       190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g-~~~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~  267 (417)
T TIGR02800       190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG-QRE-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG  267 (417)
T ss_pred             CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC-CEE-EeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC
Confidence            356777898874  33333   2358999999887 332 33345566778999999987764 44444  588999988


Q ss_pred             CeEEEEEecCCc--eEEEEeCCCEEEEE-c-CC--eEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCC---c
Q 016224          182 GQCAGVINLGGE--VGCMISEGPWIFIG-V-TN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDG---A  250 (393)
Q Consensus       182 ~~~~~~~~~~~~--~~~~~~~~~~l~~~-~-~~--~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg---~  250 (393)
                      ++..........  ...+.++++.|+.. . .+  .|.++++.+++...+..+...+....|+++  +++....++   .
T Consensus       268 ~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~  347 (417)
T TIGR02800       268 KQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFN  347 (417)
T ss_pred             CCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceE
Confidence            765444333221  22445678876654 2 22  688889888776666555666778889887  666666655   7


Q ss_pred             EEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCC---cEEEeeCCCcceeeEeccCccceE
Q 016224          251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDN---SIRVWNLETLQCIQTLTEHTSVVM  317 (393)
Q Consensus       251 I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~v~  317 (393)
                      |.+||+..+..  +.+.. ... ..-..++.++++|+..+.++   .+.+.+.. ++....+..+.+.+.
T Consensus       348 i~~~d~~~~~~--~~l~~-~~~-~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~  412 (417)
T TIGR02800       348 IAVMDLDGGGE--RVLTD-TGL-DESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVR  412 (417)
T ss_pred             EEEEeCCCCCe--EEccC-CCC-CCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcC
Confidence            88888876421  11111 111 11124455677776665543   35555543 444455544333333

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.80  E-value=5.8e-07  Score=83.48  Aligned_cols=181  Identities=19%  Similarity=0.172  Sum_probs=133.3

Q ss_pred             EEEE-EcCCeEEEEECCCCceeeecC----CCCcEEEEEEe------C--------------C--EEEEEeCCCcEEEEE
Q 016224          203 WIFI-GVTNFVKAWNTQTNTDLSLSG----PVGQVYAMAVG------N--------------D--LLFAGTQDGAILAWK  255 (393)
Q Consensus       203 ~l~~-~~~~~i~v~d~~~~~~~~~~~----~~~~v~~l~~~------~--------------~--~l~~~~~dg~I~vwd  255 (393)
                      +++. ..||.+++|+...++...-..    ..+..++..|.      |              +  .++-|...|.|.+|+
T Consensus         7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys   86 (541)
T KOG4547|consen    7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS   86 (541)
T ss_pred             eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence            3443 488999999999988763222    22333343331      1              2  788899999999999


Q ss_pred             eccCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCC--EEEEEeC
Q 016224          256 FNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ--FLLSCSL  331 (393)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~  331 (393)
                      +..+...  ....-..|.+.|.++.+..+  .|++++.|+.+..|+....+.+..+......+.+++++++  .+++++ 
T Consensus        87 ~~~g~it--~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-  163 (541)
T KOG4547|consen   87 VAGGEIT--AKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-  163 (541)
T ss_pred             ecCCeEE--EEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-
Confidence            9887431  12223468899999987754  6999999999999999999999999999999999988855  777775 


Q ss_pred             CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeC--CC-CCcEEEEEeCCCeEEEEeCCc
Q 016224          332 DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD--SE-GKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       332 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~-~~~~l~s~s~dg~I~iwd~~s  389 (393)
                       ++|++||+++.+.+..+.+|...  +..+.|...  +. +..+|.+...+.-|.+|-+..
T Consensus       164 -~~ik~~~~~~kevv~~ftgh~s~--v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  164 -RQIKVLDIETKEVVITFTGHGSP--VRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             -ceEEEEEccCceEEEEecCCCcc--eEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence             58999999999988888888776  566665544  22 333555555666788887653

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.79  E-value=3e-08  Score=93.98  Aligned_cols=210  Identities=20%  Similarity=0.311  Sum_probs=141.5

Q ss_pred             CeEEEEECCC--CcEEEEEecCCcCCEEEEEecCCC-CEEEEEeCCCcEEEEECCCCeE-EEEEec---C-CceEEEEeC
Q 016224          129 KFLHSWTVGD--GFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQC-AGVINL---G-GEVGCMISE  200 (393)
Q Consensus       129 g~i~vwd~~~--~~~~~~~l~~h~~~I~~i~~s~~~-~~l~s~s~dg~v~iwd~~~~~~-~~~~~~---~-~~~~~~~~~  200 (393)
                      ..-.+|++..  ....-..+.+|+.+|+.+-|++.. ..|++++.|-.|..||+++... +..+..   . ..+.--..+
T Consensus        91 qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~  170 (1081)
T KOG0309|consen   91 QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD  170 (1081)
T ss_pred             chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccC
Confidence            3445788752  225556788999999999998854 6889999999999999987642 222221   1 122222346


Q ss_pred             CCEEEEEcCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceee
Q 016224          201 GPWIFIGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA  275 (393)
Q Consensus       201 ~~~l~~~~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~  275 (393)
                      +..++.+..+.|.+||.+.+...  .+.+|...|..+.|..-   .+.+.+.|++|+.||........+...+   ...+
T Consensus       171 p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt---t~~p  247 (1081)
T KOG0309|consen  171 PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT---TNFP  247 (1081)
T ss_pred             cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc---ccCc
Confidence            77777788889999999987644  78889999999998765   8999999999999998876542221111   1111


Q ss_pred             EE-----------EEEE--cCCEEEEecCCCcEEEeeCCC-cceeeEeccCccceEEEEEc------------CCEEEEE
Q 016224          276 VV-----------SLVV--GANKLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW------------DQFLLSC  329 (393)
Q Consensus       276 v~-----------~l~~--~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~------------~~~l~s~  329 (393)
                      |.           ++-+  .++.+..---+.....|+..+ .+++++|.+|...|..+.|.            +-.|++=
T Consensus       248 iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTW  327 (1081)
T KOG0309|consen  248 IWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTW  327 (1081)
T ss_pred             ceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEe
Confidence            11           1111  112222222233334444433 56799999999999777664            1269999


Q ss_pred             eCCCcEEEEEcC
Q 016224          330 SLDKTIKVWFAT  341 (393)
Q Consensus       330 s~dg~i~iwd~~  341 (393)
                      +.|..+++|-+.
T Consensus       328 SkD~~lrlWpI~  339 (1081)
T KOG0309|consen  328 SKDQTLRLWPID  339 (1081)
T ss_pred             ecCCceEeeecc
Confidence            999999999765

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.74  E-value=2.8e-06  Score=78.61  Aligned_cols=220  Identities=12%  Similarity=0.150  Sum_probs=144.7

Q ss_pred             EEeeEecCcEEEe-cCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCC--CEEEE-----EeCCCcEEEEECCCCeE
Q 016224          113 LCRNWVQGNCMYG-EKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS--DKLYS-----GSKDETVRVWDCASGQC  184 (393)
Q Consensus       113 ~c~~~~~~~~~~g-~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~--~~l~s-----~s~dg~v~iwd~~~~~~  184 (393)
                      .|.+|+.+..+.+ -..+.+++|+..+-....+.|  |...|+.+.+||..  ..||+     .+.-..|+||.+.....
T Consensus       129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~  206 (566)
T KOG2315|consen  129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ  206 (566)
T ss_pred             cccccccchhhhhhhhcceEEEEecCCccceeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence            6888987765543 355689999987642333333  68899999999863  34443     34556899998863322


Q ss_pred             E-----EEEecCCceEEEEe-CCC--EEEEE--c---------CCeEEEEECCCCceeeecCCCCcEEEEEEeCC----E
Q 016224          185 A-----GVINLGGEVGCMIS-EGP--WIFIG--V---------TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----L  241 (393)
Q Consensus       185 ~-----~~~~~~~~~~~~~~-~~~--~l~~~--~---------~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~----~  241 (393)
                      -     ++|-....+..... -+.  ++++.  .         +.++++++++......-....++|.++.|+++    -
T Consensus       207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~  286 (566)
T KOG2315|consen  207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFA  286 (566)
T ss_pred             cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEE
Confidence            1     12222223322222 122  22222  1         23788888885555555556899999999998    3


Q ss_pred             EEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEE--cCCEEEEecC---CCcEEEeeCCCcceeeEeccCccce
Q 016224          242 LFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSM---DNSIRVWNLETLQCIQTLTEHTSVV  316 (393)
Q Consensus       242 l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~~~v  316 (393)
                      ++.|-.=-.+.|||++..     ++..+..  ++-.++-|  .|++++.++-   -|.+-|||+.+.+++..+..-...+
T Consensus       287 VvyGfMPAkvtifnlr~~-----~v~df~e--gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~  359 (566)
T KOG2315|consen  287 VVYGFMPAKVTIFNLRGK-----PVFDFPE--GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTV  359 (566)
T ss_pred             EEEecccceEEEEcCCCC-----EeEeCCC--CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceE
Confidence            444556678999998863     3444432  33344445  4777766654   5899999999999999998777766


Q ss_pred             EEEEEcCCEEEEEeC------CCcEEEEEcC
Q 016224          317 MSLLCWDQFLLSCSL------DKTIKVWFAT  341 (393)
Q Consensus       317 ~~l~~~~~~l~s~s~------dg~i~iwd~~  341 (393)
                      ..-+.+|++|+|+..      |+.++||+..
T Consensus       360 ~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             EEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            666666899998875      7889999984

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.73  E-value=2.8e-05  Score=81.65  Aligned_cols=233  Identities=14%  Similarity=0.132  Sum_probs=136.4

Q ss_pred             EEEEecCC-CCEEEEEeCCCcEEEEECCCCeEEEEEecC----------------Cce-EEEEeCCCEEEEE--cCCeEE
Q 016224          154 SGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVINLG----------------GEV-GCMISEGPWIFIG--VTNFVK  213 (393)
Q Consensus       154 ~~i~~s~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~----------------~~~-~~~~~~~~~l~~~--~~~~i~  213 (393)
                      ..+++++. ++++++-+..+.|.+||.. ++.+..+...                .+. ..+.+++..|+++  ..+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            35778764 5566666778899999986 4444433321                111 2233456655554  346899


Q ss_pred             EEECCCCceeeecCC-----------------CCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCcc-cc---Cceee
Q 016224          214 AWNTQTNTDLSLSGP-----------------VGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC-FE---PAASL  269 (393)
Q Consensus       214 v~d~~~~~~~~~~~~-----------------~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~-~~---~~~~~  269 (393)
                      ++|..++....+.+.                 ......++++++   ++++...++.|++||...+... +.   .....
T Consensus       650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~  729 (1057)
T PLN02919        650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL  729 (1057)
T ss_pred             EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence            999888765443211                 123457888873   6677778899999998664210 00   00000


Q ss_pred             cCc------eeeEEEEEE--cCC-EEEEecCCCcEEEeeCCCcceeeEe-------------ccCc--------cceEEE
Q 016224          270 KGH------SLAVVSLVV--GAN-KLYSGSMDNSIRVWNLETLQCIQTL-------------TEHT--------SVVMSL  319 (393)
Q Consensus       270 ~~~------~~~v~~l~~--~~~-~l~sg~~dg~i~iwd~~~~~~~~~~-------------~~~~--------~~v~~l  319 (393)
                      .++      -.....+++  +++ ++++-+.++.|++||+.++......             ..+.        ..-..+
T Consensus       730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv  809 (1057)
T PLN02919        730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV  809 (1057)
T ss_pred             CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence            010      011234555  455 4556667899999999876532111             0000        012456


Q ss_pred             EEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecC------------CccEEEEEeeeCCCCCcEEEEEeCCCeEEEE
Q 016224          320 LCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE------------EHGVLALCGMPDSEGKPVLLCSCNDNSVRFY  385 (393)
Q Consensus       320 ~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iw  385 (393)
                      +++  ++.+++-+.+++|++||..++... .+.....            -.....+++.+++.   ++++-+.++.|++|
T Consensus       810 avd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~---lyVaDt~Nn~Irvi  885 (1057)
T PLN02919        810 LCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGR---LFVADTNNSLIRYL  885 (1057)
T ss_pred             eEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCC---EEEEECCCCEEEEE
Confidence            665  667788888999999998765432 2222110            11345667766543   88888899999999


Q ss_pred             eCCcee
Q 016224          386 DLPSVI  391 (393)
Q Consensus       386 d~~s~~  391 (393)
                      |+.+++
T Consensus       886 d~~~~~  891 (1057)
T PLN02919        886 DLNKGE  891 (1057)
T ss_pred             ECCCCc
Confidence            998865

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.70  E-value=7.7e-08  Score=91.32  Aligned_cols=215  Identities=17%  Similarity=0.174  Sum_probs=145.7

Q ss_pred             cCCEEEEEecCCCCEEEEEeCCCcEEEEECCC-CeEEEEEecCCce----EEEE--e-CCCEEEEEcCCeEEEEECCCCc
Q 016224          150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-GQCAGVINLGGEV----GCMI--S-EGPWIFIGVTNFVKAWNTQTNT  221 (393)
Q Consensus       150 ~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~----~~~~--~-~~~~l~~~~~~~i~v~d~~~~~  221 (393)
                      ..++.++..+|.|+-++.++.-|. .+-|+.. ....+.+.+-.+.    ..+.  + ...+++......-.+|++....
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS  102 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence            356777889999999999888764 4556554 3333333322221    1111  2 2334444455567788876433


Q ss_pred             ----eeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCC
Q 016224          222 ----DLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMD  292 (393)
Q Consensus       222 ----~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~d  292 (393)
                          .+.+.+|...|+.+.|++.   .+++++.|-.+..||+++..   .+......-......++|+  ...+.+.+..
T Consensus       103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~---~p~ys~~~w~s~asqVkwnyk~p~vlasshg  179 (1081)
T KOG0309|consen  103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH---RPFYSTSSWRSAASQVKWNYKDPNVLASSHG  179 (1081)
T ss_pred             ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC---cceeeeecccccCceeeecccCcchhhhccC
Confidence                2367899999999999765   99999999999999999875   4444444444455566775  2234455567


Q ss_pred             CcEEEeeCCC-cceeeEeccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCC
Q 016224          293 NSIRVWNLET-LQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE  368 (393)
Q Consensus       293 g~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  368 (393)
                      ..|++||++. +.++.++++|...|..+.|.   ...+.+++.|++|+.||........... .....++..-.+.|.++
T Consensus       180 ~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~-vtt~~piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  180 NDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT-VTTNFPIWRGRYLPFGE  258 (1081)
T ss_pred             CceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee-ccccCcceeccccccCc
Confidence            7899999986 46788899999999999887   4578999999999999987554322222 22234567777777765


Q ss_pred             C
Q 016224          369 G  369 (393)
Q Consensus       369 ~  369 (393)
                      +
T Consensus       259 g  259 (1081)
T KOG0309|consen  259 G  259 (1081)
T ss_pred             e
Confidence            4

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.67  E-value=4.9e-06  Score=79.57  Aligned_cols=208  Identities=14%  Similarity=0.051  Sum_probs=117.6

Q ss_pred             eecceEEeeEecCc--EEEecC---CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEE-EEeCCC--cEEEEEC
Q 016224          108 IKTDILCRNWVQGN--CMYGEK---CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDE--TVRVWDC  179 (393)
Q Consensus       108 ~~~~i~c~~~~~~~--~~~g~~---dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~-s~s~dg--~v~iwd~  179 (393)
                      +...+....|++++  +++.+.   ...|.+||+.++ +.. .+....+.+...+|+|||+.|+ +.+.+|  .|.+||+
T Consensus       197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g-~~~-~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~  274 (430)
T PRK00178        197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG-RRE-QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL  274 (430)
T ss_pred             CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC-CEE-EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence            44567888999774  334332   247999999877 332 2333344556789999999887 445555  5888899


Q ss_pred             CCCeEEEEEecCCc--eEEEEeCCCEEEEEc--C--CeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeC-CC-
Q 016224          180 ASGQCAGVINLGGE--VGCMISEGPWIFIGV--T--NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ-DG-  249 (393)
Q Consensus       180 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~--~--~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~-dg-  249 (393)
                      .+++..........  ...+.++++.++...  +  ..|.++++.+++...+...........|+|+  .++.... ++ 
T Consensus       275 ~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~  354 (430)
T PRK00178        275 ASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGN  354 (430)
T ss_pred             CCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCc
Confidence            88775543332211  234556787666542  2  2688888888776544322233345678877  5544443 33 


Q ss_pred             -cEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCC---CcEEEeeCCCcceeeEeccCccceEEEEEc
Q 016224          250 -AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD---NSIRVWNLETLQCIQTLTEHTSVVMSLLCW  322 (393)
Q Consensus       250 -~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~  322 (393)
                       .|.++|+.++..  ..+..  .....-..++.+++.++..+.+   ..|.++++. +.....+..+.+.+...+|+
T Consensus       355 ~~l~~~dl~tg~~--~~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws  426 (430)
T PRK00178        355 FHVAAQDLQRGSV--RILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWS  426 (430)
T ss_pred             eEEEEEECCCCCE--EEccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccC
Confidence             477888876532  11111  1111112455567766555433   346677774 34344454444444444443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.65  E-value=6.3e-06  Score=78.90  Aligned_cols=207  Identities=10%  Similarity=0.031  Sum_probs=116.2

Q ss_pred             ecceEEeeEecCc--EEEec-CC--CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEE-EeCCCc--EEEEECC
Q 016224          109 KTDILCRNWVQGN--CMYGE-KC--KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYS-GSKDET--VRVWDCA  180 (393)
Q Consensus       109 ~~~i~c~~~~~~~--~~~g~-~d--g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s-~s~dg~--v~iwd~~  180 (393)
                      ...+....|++++  +++.+ .+  ..|++||+.++ +.. .+..........+|+||++.|+. .+.+|.  |.++|+.
T Consensus       217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg-~~~-~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~  294 (448)
T PRK04792        217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ-VRE-KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA  294 (448)
T ss_pred             CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC-CeE-EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence            4467788999885  33332 22  36899999876 322 22222233456899999998765 566665  7778888


Q ss_pred             CCeEEEEEecCC--ceEEEEeCCCEEEEEc--CC--eEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEE-EeCCCc-
Q 016224          181 SGQCAGVINLGG--EVGCMISEGPWIFIGV--TN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFA-GTQDGA-  250 (393)
Q Consensus       181 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~~--~~--~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~-~~~dg~-  250 (393)
                      +++.........  ....+.++++.++...  ++  .|.++|+.+++...+...........|+|+  .|+. ...++. 
T Consensus       295 tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~  374 (448)
T PRK04792        295 TKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKF  374 (448)
T ss_pred             CCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCce
Confidence            876544333221  2234567888776542  22  677888888776544322233345678887  4444 444554 


Q ss_pred             -EEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEec-CCC--cEEEeeCCCcceeeEeccCccceEEEEEc
Q 016224          251 -ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGS-MDN--SIRVWNLETLQCIQTLTEHTSVVMSLLCW  322 (393)
Q Consensus       251 -I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~  322 (393)
                       |.++|+.++..  ..+.  ......-.+++.++++|+..+ .++  .+.+++. +++....+..+.+.+...+|+
T Consensus       375 ~I~~~dl~~g~~--~~lt--~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Ws  445 (448)
T PRK04792        375 NIARQDLETGAM--QVLT--STRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWS  445 (448)
T ss_pred             EEEEEECCCCCe--EEcc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccC
Confidence             44556655431  1111  111111124555677655444 344  3677776 466666666555555555554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.64  E-value=0.00021  Score=63.22  Aligned_cols=257  Identities=13%  Similarity=0.145  Sum_probs=153.3

Q ss_pred             CCeEEEEECCCC--cEEEEEecCCcCCEEEEEecCCCCEEEEEeCC---CcEEEEECCC--CeEEE--EEecC--C-ceE
Q 016224          128 CKFLHSWTVGDG--FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---ETVRVWDCAS--GQCAG--VINLG--G-EVG  195 (393)
Q Consensus       128 dg~i~vwd~~~~--~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d---g~v~iwd~~~--~~~~~--~~~~~--~-~~~  195 (393)
                      +.-|++|++.+.  ......+-.+.+..+-|+|+|++++|+++-.+   |.|..|.++.  |+...  .....  . ...
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            567999998743  12222334577889999999999999998654   7888887765  44322  22222  2 234


Q ss_pred             EEEeCCCEEEEE--cCCeEEEEECCC-Ccee---eecCCCCc----------EEEEEEeCC--EEEEEe-CCCcEEEEEe
Q 016224          196 CMISEGPWIFIG--VTNFVKAWNTQT-NTDL---SLSGPVGQ----------VYAMAVGND--LLFAGT-QDGAILAWKF  256 (393)
Q Consensus       196 ~~~~~~~~l~~~--~~~~i~v~d~~~-~~~~---~~~~~~~~----------v~~l~~~~~--~l~~~~-~dg~I~vwd~  256 (393)
                      ++..++++++++  ..+.|.++-++. +...   .+..|.+.          +....+.|+  +|++.. .-..|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            455688899987  567999999976 3322   33444444          777888888  444443 3456999999


Q ss_pred             ccCCccccCceeecCceeeEEEEEEc--CCEEEE-ecCCCcEEEeeCCCc-ceeeEecc---------CccceEEEEEc-
Q 016224          257 NVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYS-GSMDNSIRVWNLETL-QCIQTLTE---------HTSVVMSLLCW-  322 (393)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s-g~~dg~i~iwd~~~~-~~~~~~~~---------~~~~v~~l~~~-  322 (393)
                      ..+.........+ .....-..|.|.  +++.+. .--+++|.+|..... ..+..++.         ......+|..+ 
T Consensus       175 ~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~  253 (346)
T COG2706         175 DDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP  253 (346)
T ss_pred             ccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence            8664332222222 223334556665  455444 446899999988762 22222221         12234455555 


Q ss_pred             -CCEEEEEeC-CCcEEEEEcCCCcc-eEEEEeecCC-ccEEEEEeeeCCCCCcEEEEEeC-CCeEEEEeCC
Q 016224          323 -DQFLLSCSL-DKTIKVWFATDSGN-LEVTYTHNEE-HGVLALCGMPDSEGKPVLLCSCN-DNSVRFYDLP  388 (393)
Q Consensus       323 -~~~l~s~s~-dg~i~iwd~~~~~~-~~~~~~~~~~-~~v~~~~~~~~~~~~~~l~s~s~-dg~I~iwd~~  388 (393)
                       |++|.++.. ...|.+|.+..... +........+ ..-..+.+.+.+.   +|+++.. +..|.+|.+.
T Consensus       254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~---~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGR---FLIAANQKSDNITVFERD  321 (346)
T ss_pred             CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCC---EEEEEccCCCcEEEEEEc
Confidence             778877654 44788888875533 3333322222 2255666655544   7777665 4568888764

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.64  E-value=0.00022  Score=63.69  Aligned_cols=256  Identities=13%  Similarity=0.155  Sum_probs=152.3

Q ss_pred             CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC----------CCcEEEEECCCCeEEEEEecCCc--e--
Q 016224          129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK----------DETVRVWDCASGQCAGVINLGGE--V--  194 (393)
Q Consensus       129 g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~----------dg~v~iwd~~~~~~~~~~~~~~~--~--  194 (393)
                      +.++|+|.+++ +.+-.+..--  .-.+..+|+++.+++++.          .-.|.+||..+-+....+..+..  .  
T Consensus        17 ~rv~viD~d~~-k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~   93 (342)
T PF06433_consen   17 SRVYVIDADSG-KLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV   93 (342)
T ss_dssp             EEEEEEETTTT-EEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred             ceEEEEECCCC-cEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence            47999999998 7777775322  223567899999987642          34899999999999988877653  1  


Q ss_pred             ------EEEEeCCCEEEEE---cCCeEEEEECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCcccc-
Q 016224          195 ------GCMISEGPWIFIG---VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFE-  264 (393)
Q Consensus       195 ------~~~~~~~~~l~~~---~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~-  264 (393)
                            ..+..+++++++-   -...|.|.|+..++.+......+...-.-..++-|.+-|.||++.-..+....+... 
T Consensus        94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~  173 (342)
T PF06433_consen   94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK  173 (342)
T ss_dssp             S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred             cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence                  2344578888775   334888899988888755555555444455566888999999999999885432111 


Q ss_pred             CceeecCceeeEE-EEE--EcCCEEEEecCCCcEEEeeCCCcce--eeEeccC----------ccceEEEEEc--CCEEE
Q 016224          265 PAASLKGHSLAVV-SLV--VGANKLYSGSMDNSIRVWNLETLQC--IQTLTEH----------TSVVMSLLCW--DQFLL  327 (393)
Q Consensus       265 ~~~~~~~~~~~v~-~l~--~~~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~~----------~~~v~~l~~~--~~~l~  327 (393)
                      ....+.....++. .-.  -.++.++--+.+|.|+--|+.....  ...+..-          .+.-.-++++  .+.|+
T Consensus       174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly  253 (342)
T PF06433_consen  174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY  253 (342)
T ss_dssp             EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred             eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence            0011111111111 111  1344566677888888888765432  1222110          0011223343  23333


Q ss_pred             EEe---C-----CC--cEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe-CCCeEEEEeCCceee
Q 016224          328 SCS---L-----DK--TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDLPSVII  392 (393)
Q Consensus       328 s~s---~-----dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s-~dg~I~iwd~~s~~l  392 (393)
                      +--   .     |+  .|-++|+.+.+.+..+....   .+.++..+.+  ++++|++.+ .++.|.+||..+|++
T Consensus       254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~---~~~Si~Vsqd--~~P~L~~~~~~~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH---PIDSIAVSQD--DKPLLYALSAGDGTLDVYDAATGKL  324 (342)
T ss_dssp             EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE---EESEEEEESS--SS-EEEEEETTTTEEEEEETTT--E
T ss_pred             EEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC---ccceEEEccC--CCcEEEEEcCCCCeEEEEeCcCCcE
Confidence            221   1     22  26677888887777665422   2546666654  455777654 589999999999975

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.63  E-value=3.3e-05  Score=65.21  Aligned_cols=267  Identities=16%  Similarity=0.194  Sum_probs=137.9

Q ss_pred             ceEEeeEe-cCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEE-EEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 016224          111 DILCRNWV-QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVS-GITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI  188 (393)
Q Consensus       111 ~i~c~~~~-~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~-~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~  188 (393)
                      .|-|.+.. .+-++.|...|.+++.+.++| .....+..-. .|. .-...+++.++..|+.|++....|..+..++...
T Consensus        54 RiE~sa~vvgdfVV~GCy~g~lYfl~~~tG-s~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks  131 (354)
T KOG4649|consen   54 RIECSAIVVGDFVVLGCYSGGLYFLCVKTG-SQIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS  131 (354)
T ss_pred             eeeeeeEEECCEEEEEEccCcEEEEEecch-hheeeeeehh-hhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence            44444433 445778999999999999999 5555554322 222 2234678999999999999999999999999888


Q ss_pred             ecCCceEE---EEe-CCCEEEEEcCCeEEEEECCCCceeeec--CCCCcEEE--EEEeCCEEEEEeCCCcE--------E
Q 016224          189 NLGGEVGC---MIS-EGPWIFIGVTNFVKAWNTQTNTDLSLS--GPVGQVYA--MAVGNDLLFAGTQDGAI--------L  252 (393)
Q Consensus       189 ~~~~~~~~---~~~-~~~~l~~~~~~~i~v~d~~~~~~~~~~--~~~~~v~~--l~~~~~~l~~~~~dg~I--------~  252 (393)
                      +.++.+..   +.+ ++.+.++...|.+.--+..+.....+-  ....++.+  +...+ .+..++.||.+        .
T Consensus       132 kcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~-sv~i~~VdG~l~~f~~sG~q  210 (354)
T KOG4649|consen  132 KCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGS-SVIITTVDGVLTSFDESGRQ  210 (354)
T ss_pred             ccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccc-eEEEEEeccEEEEEcCCCcE
Confidence            77655422   223 455555556665555454444222111  11122221  11111 22333344444        3


Q ss_pred             EEEeccCCccccCceeecCceeeEEEEEEc-CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEE-----c-CCE
Q 016224          253 AWKFNVTTNCFEPAASLKGHSLAVVSLVVG-ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC-----W-DQF  325 (393)
Q Consensus       253 vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~-----~-~~~  325 (393)
                      +|..+++...+.  ..-..|. ....+.+. .+-+.+......-.+|..++|...+.+-..+   ..+.+     + +++
T Consensus       211 vwr~~t~GpIf~--~Pc~s~P-s~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~---l~F~~h~~~~S~~~l  284 (354)
T KOG4649|consen  211 VWRPATKGPIFM--EPCESRP-SCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPK---LRFDLHSPGISYPKL  284 (354)
T ss_pred             EEeecCCCceec--ccccCCC-cceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcc---cceeccCCCCcchhh
Confidence            555555432211  0111111 11222222 2333333333344567766664433322111   01111     1 457


Q ss_pred             EEEEeCCCcEEEEEcCC--------CcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          326 LLSCSLDKTIKVWFATD--------SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       326 l~s~s~dg~i~iwd~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      |..++.||++.|.-.+.        +.+++.+....-...+.   -+|.--++ .|+.|+.|..|+-||+.+.
T Consensus       285 l~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~~el~~eIF---sSPvii~g-rl~igcRDdYv~cldl~~~  353 (354)
T KOG4649|consen  285 LRRSSGDGKVMILMTSKSLAEISSNGGELQNLEAIELSNEIF---SSPVIIDG-RLLIGCRDDYVRCLDLDTW  353 (354)
T ss_pred             hhhhcCCCcEEEEEecccccccccCCCccceEEEeecCcccc---cCCeEEcc-EEEEEEccCeEEEEecccc
Confidence            78889999998874321        12222222111111111   11111122 5888999999999999875

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.62  E-value=1.1e-07  Score=82.63  Aligned_cols=140  Identities=20%  Similarity=0.208  Sum_probs=100.5

Q ss_pred             EEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCc-----ceeeEeccCccc
Q 016224          243 FAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETL-----QCIQTLTEHTSV  315 (393)
Q Consensus       243 ~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~-----~~~~~~~~~~~~  315 (393)
                      ++.+.+..|.+-|+.++..     ..+. ....|.++.|.  ++++..|...|.|..+|++.+     .+.+.+. |...
T Consensus       228 fs~G~sqqv~L~nvetg~~-----qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ss  300 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-----QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSS  300 (425)
T ss_pred             ecccccceeEEEEeecccc-----cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcc
Confidence            5566677788888888642     2232 45566666664  679999999999999999864     3444443 7888


Q ss_pred             eEEEE---EcCCEEEEEeCCCcEEEEEcCCCcc---eEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          316 VMSLL---CWDQFLLSCSLDKTIKVWFATDSGN---LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       316 v~~l~---~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      |+++.   +++++|++.+.+|+|++||++..+.   +....+|.....-.  -++-+. .+..+++++.|-..|||.+.+
T Consensus       301 vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l--~~~v~~-eeg~I~s~GdDcytRiWsl~~  377 (425)
T KOG2695|consen  301 VTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL--PAHVKE-EEGSIFSVGDDCYTRIWSLDS  377 (425)
T ss_pred             hhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccc--cccccc-ccceEEEccCeeEEEEEeccc
Confidence            87764   5688999999999999999987766   55666654432222  222222 333788899999999999998


Q ss_pred             eee
Q 016224          390 VII  392 (393)
Q Consensus       390 ~~l  392 (393)
                      +.|
T Consensus       378 ghL  380 (425)
T KOG2695|consen  378 GHL  380 (425)
T ss_pred             Cce
Confidence            865

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.59  E-value=9.8e-05  Score=77.67  Aligned_cols=219  Identities=11%  Similarity=0.112  Sum_probs=131.4

Q ss_pred             EecCCCeEEEEECCCCcEEEEEecC-C-------------cCCEEEEEecCCCCEEEEEeC-CCcEEEEECCCCeEEEEE
Q 016224          124 YGEKCKFLHSWTVGDGFKLLTQLEG-H-------------QKVVSGITLPSGSDKLYSGSK-DETVRVWDCASGQCAGVI  188 (393)
Q Consensus       124 ~g~~dg~i~vwd~~~~~~~~~~l~~-h-------------~~~I~~i~~s~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~  188 (393)
                      +-+..+.|++||....  .+..+.+ .             -..-..|+++++++.|+.+.. ...|+++|..++.. .++
T Consensus       585 aDs~n~rI~v~d~~G~--~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tl  661 (1057)
T PLN02919        585 SDSNHNRIVVTDLDGN--FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTL  661 (1057)
T ss_pred             EECCCCeEEEEeCCCC--EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEE
Confidence            3456678999997643  3333322 1             123578999998887776655 46799999877653 222


Q ss_pred             ec-------------------CCce-EEEEe-CCCEEEEE-cCCeEEEEECCCCceeeecCC---------------CCc
Q 016224          189 NL-------------------GGEV-GCMIS-EGPWIFIG-VTNFVKAWNTQTNTDLSLSGP---------------VGQ  231 (393)
Q Consensus       189 ~~-------------------~~~~-~~~~~-~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~---------------~~~  231 (393)
                      ..                   ..+. ..+.+ ++.++++. .++.|++||..++....+.+.               ...
T Consensus       662 ag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~  741 (1057)
T PLN02919        662 AGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQ  741 (1057)
T ss_pred             eccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccC
Confidence            11                   1111 23334 34444443 567999999987765432211               123


Q ss_pred             EEEEEEeCC---EEEEEeCCCcEEEEEeccCCccc---------cCceeecCc--------eeeEEEEEE--cCCEEEEe
Q 016224          232 VYAMAVGND---LLFAGTQDGAILAWKFNVTTNCF---------EPAASLKGH--------SLAVVSLVV--GANKLYSG  289 (393)
Q Consensus       232 v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~---------~~~~~~~~~--------~~~v~~l~~--~~~~l~sg  289 (393)
                      ...|+++++   ++++-+.++.|++||+.++....         .....+...        -.....+++  +++.+++-
T Consensus       742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVAD  821 (1057)
T PLN02919        742 PSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVAD  821 (1057)
T ss_pred             ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEE
Confidence            556888886   55666778999999987643110         000000000        001134444  46678888


Q ss_pred             cCCCcEEEeeCCCcceeeEecc-------------CccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcc
Q 016224          290 SMDNSIRVWNLETLQCIQTLTE-------------HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGN  345 (393)
Q Consensus       290 ~~dg~i~iwd~~~~~~~~~~~~-------------~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~  345 (393)
                      +.++.|++||..++........             .-.....++++  ++.+++-+.++.|++||+.+...
T Consensus       822 s~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        822 SYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            8899999999987765432210             11134566665  67888888899999999987653

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.59  E-value=8.1e-05  Score=72.17  Aligned_cols=224  Identities=12%  Similarity=0.062  Sum_probs=138.7

Q ss_pred             CcEEEecCCCeEEEEECCCCcEEEEEecCCcCC--EEEEEecC--CCCEEEEEe---------CCCcEEEEECCCCeEEE
Q 016224          120 GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV--VSGITLPS--GSDKLYSGS---------KDETVRVWDCASGQCAG  186 (393)
Q Consensus       120 ~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~--I~~i~~s~--~~~~l~s~s---------~dg~v~iwd~~~~~~~~  186 (393)
                      +.+++++.++.|+-+|.+++ +.+-+++.....  -..+.-+|  .+.+++.++         .+|.|..+|..+|+.+.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG-~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W  189 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETG-KQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW  189 (488)
T ss_pred             CeEEEecCCCeEEEEECCCC-CEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence            67788999999999999999 666555433221  00111111  124555554         36889999999999988


Q ss_pred             EEecCCce------------------------EEEEeCCCEEEEE-cCC------------------eEEEEECCCCcee
Q 016224          187 VINLGGEV------------------------GCMISEGPWIFIG-VTN------------------FVKAWNTQTNTDL  223 (393)
Q Consensus       187 ~~~~~~~~------------------------~~~~~~~~~l~~~-~~~------------------~i~v~d~~~~~~~  223 (393)
                      .++.....                        ..+...+..++++ .++                  .|.-+|..+++..
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~  269 (488)
T cd00216         190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK  269 (488)
T ss_pred             EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence            87653110                        0111234555555 332                  6999999999887


Q ss_pred             -eec--CCCC---------cEEEEE-EeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEE
Q 016224          224 -SLS--GPVG---------QVYAMA-VGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLY  287 (393)
Q Consensus       224 -~~~--~~~~---------~v~~l~-~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~  287 (393)
                       ...  .+..         .+..+. .+..   .+++++.+|.+..+|.++++..++....       ...++.+++.++
T Consensus       270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-------~~~~~~~~~~vy  342 (488)
T cd00216         270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-------EQPMAYDPGLVY  342 (488)
T ss_pred             EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-------ccccccCCceEE
Confidence             322  1110         111111 2222   6788889999999999998654332111       011222334444


Q ss_pred             Ee------------------cCCCcEEEeeCCCcceeeEeccCc--------cce--EEEEEcCCEEEEEeCCCcEEEEE
Q 016224          288 SG------------------SMDNSIRVWNLETLQCIQTLTEHT--------SVV--MSLLCWDQFLLSCSLDKTIKVWF  339 (393)
Q Consensus       288 sg------------------~~dg~i~iwd~~~~~~~~~~~~~~--------~~v--~~l~~~~~~l~s~s~dg~i~iwd  339 (393)
                      .+                  ..+|.|.-.|+.+++.+.+.....        .+.  ..+...+..|+.++.||.|+.+|
T Consensus       343 v~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald  422 (488)
T cd00216         343 LGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD  422 (488)
T ss_pred             EccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence            32                  246889999999999887765431        111  23456688999999999999999


Q ss_pred             cCCCcceEEEEe
Q 016224          340 ATDSGNLEVTYT  351 (393)
Q Consensus       340 ~~~~~~~~~~~~  351 (393)
                      ..+++.+.....
T Consensus       423 ~~tG~~lW~~~~  434 (488)
T cd00216         423 ATTGKELWKFRT  434 (488)
T ss_pred             CCCCceeeEEEC
Confidence            999987766543

The alignment model contains an 8-bladed beta-propeller.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=1.4e-06  Score=78.51  Aligned_cols=240  Identities=15%  Similarity=0.109  Sum_probs=162.7

Q ss_pred             eecceEEeeEe-cCcEEEecCCCeEEEEECC--CCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC-CCcEEEEECCCCe
Q 016224          108 IKTDILCRNWV-QGNCMYGEKCKFLHSWTVG--DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCASGQ  183 (393)
Q Consensus       108 ~~~~i~c~~~~-~~~~~~g~~dg~i~vwd~~--~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~-dg~v~iwd~~~~~  183 (393)
                      |...|+-+.-. .+-+.+++.||.++.|--.  .+.+.+..+..|-..|.+++.+.++.++.|.+. |..++++|+++-.
T Consensus         8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D   87 (558)
T KOG0882|consen    8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD   87 (558)
T ss_pred             ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence            33445544443 4456689999999999754  355677788889999999999999999999887 9999999998876


Q ss_pred             EEEEEe---cCCceEEEEeCCC---EEEEE--cCCeEEEEECCCCcee---eecCCCCcEEEEEEeCC--EEEEEeCCCc
Q 016224          184 CAGVIN---LGGEVGCMISEGP---WIFIG--VTNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGND--LLFAGTQDGA  250 (393)
Q Consensus       184 ~~~~~~---~~~~~~~~~~~~~---~l~~~--~~~~i~v~d~~~~~~~---~~~~~~~~v~~l~~~~~--~l~~~~~dg~  250 (393)
                      .+..++   .+..+....+.|.   .++++  .++.+.++|-......   ...-|..+|..+.+.+-  .+++....|.
T Consensus        88 minmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm  167 (558)
T KOG0882|consen   88 MINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM  167 (558)
T ss_pred             hhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce
Confidence            654444   3444455555552   45554  6779999998765532   45568999999999875  7888888999


Q ss_pred             EEEEEeccCC------ccccCc-----eeecCceeeEEEEE--EcCCEEEEecCCCcEEEeeCCCcceeeEecc------
Q 016224          251 ILAWKFNVTT------NCFEPA-----ASLKGHSLAVVSLV--VGANKLYSGSMDNSIRVWNLETLQCIQTLTE------  311 (393)
Q Consensus       251 I~vwd~~~~~------~~~~~~-----~~~~~~~~~v~~l~--~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~------  311 (393)
                      |.-|.....-      ..+++.     ..+........++.  +++..+.+-+.|..|+++++++++.++.+..      
T Consensus       168 VEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~  247 (558)
T KOG0882|consen  168 VEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQ  247 (558)
T ss_pred             eEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhh
Confidence            9999877410      001111     01111222334444  4577899999999999999999887665521      


Q ss_pred             --------------------------Ccc-ceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEE
Q 016224          312 --------------------------HTS-VVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEV  348 (393)
Q Consensus       312 --------------------------~~~-~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~  348 (393)
                                                |.. .-+.+.|+  +++|+-++.=| |++.++.+......
T Consensus       248 ~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri  312 (558)
T KOG0882|consen  248 YQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRI  312 (558)
T ss_pred             hccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEE
Confidence                                      111 11344454  67777776543 77788776654443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.57  E-value=0.00011  Score=63.15  Aligned_cols=228  Identities=13%  Similarity=0.139  Sum_probs=122.5

Q ss_pred             cCcEEEecCCCeEEEEECCCCcEEE-EEecCCc---CCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce
Q 016224          119 QGNCMYGEKCKFLHSWTVGDGFKLL-TQLEGHQ---KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV  194 (393)
Q Consensus       119 ~~~~~~g~~dg~i~vwd~~~~~~~~-~~l~~h~---~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  194 (393)
                      ++.+++.-.|..|.|-...+.+..+ .+.+.++   -.=..++||||+.+||.+...|+|+++|+.. ..+..+..... 
T Consensus         8 ~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~-   85 (282)
T PF15492_consen    8 DGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMS-   85 (282)
T ss_pred             CCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccc-
Confidence            4456667788888888777664332 3333332   3456799999999999999999999999865 33333322110 


Q ss_pred             EEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeC-----C---EEEEEeCCCcEEEEEeccCC-ccccC
Q 016224          195 GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN-----D---LLFAGTQDGAILAWKFNVTT-NCFEP  265 (393)
Q Consensus       195 ~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~-----~---~l~~~~~dg~I~vwd~~~~~-~~~~~  265 (393)
                        .                           .......|..|.|-+     .   .|++-..+|.++-|-+..++ ..+..
T Consensus        86 --~---------------------------~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e  136 (282)
T PF15492_consen   86 --F---------------------------PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQE  136 (282)
T ss_pred             --c---------------------------CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCccee
Confidence              0                           001122333333321     1   56666777888777764332 11222


Q ss_pred             ceee--cC-ceeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc---CCEEE-EEeCCCc--
Q 016224          266 AASL--KG-HSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLL-SCSLDKT--  334 (393)
Q Consensus       266 ~~~~--~~-~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~-s~s~dg~--  334 (393)
                      ...+  .. +...|.++.+++.  +|+.|+....      +++.    -++....+++-..-   +.+.. +...|+.  
T Consensus       137 ~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~  206 (282)
T PF15492_consen  137 NHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITA  206 (282)
T ss_pred             eEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccc
Confidence            2222  22 3567888888754  5555553221      0000    00111122222211   22222 2222221  


Q ss_pred             ----EEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          335 ----IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       335 ----i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                          ..+|.+.+.+ +.. ........+..+..+|++.   +|++...+|.|.+|++++.++
T Consensus       207 ~~~~~~~~~~~~~~-~fs-~~~~~~d~i~kmSlSPdg~---~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  207 SSKRRGLLRIPSFK-FFS-RQGQEQDGIFKMSLSPDGS---LLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             cccccceeecccee-eee-ccccCCCceEEEEECCCCC---EEEEEEcCCeEEEEecCcchh
Confidence                1233322111 111 1123345688899988877   999999999999999998754

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.54  E-value=2.4e-05  Score=66.25  Aligned_cols=190  Identities=11%  Similarity=0.015  Sum_probs=124.8

Q ss_pred             cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECCCCeEEEEEecC---CceEE
Q 016224          121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVINLG---GEVGC  196 (393)
Q Consensus       121 ~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~---~~~~~  196 (393)
                      .++.|+..|...+|...+..........|...|+-+.=.- ..-.+..++.|.++++.+++-+.........   .....
T Consensus        86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~  165 (344)
T KOG4532|consen   86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLH  165 (344)
T ss_pred             EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeE
Confidence            4556889999999999876455555555665544332111 2234667788889999888765443333322   22334


Q ss_pred             EEeCCCEEEE-EcCCeEEEEECCCCcee----eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccc-cCcee
Q 016224          197 MISEGPWIFI-GVTNFVKAWNTQTNTDL----SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCF-EPAAS  268 (393)
Q Consensus       197 ~~~~~~~l~~-~~~~~i~v~d~~~~~~~----~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~-~~~~~  268 (393)
                      +.++++++++ |....|..|.+......    ......+.-.+..|+..  .+|++.+||++.|||++...... +....
T Consensus       166 ~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sst  245 (344)
T KOG4532|consen  166 YSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISST  245 (344)
T ss_pred             EcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhccc
Confidence            4568888876 56678999988765433    22333444556677765  99999999999999998764321 22223


Q ss_pred             ecCceeeEEEEEEc-C---CEEEEecCCCcEEEeeCCCcceeeEec
Q 016224          269 LKGHSLAVVSLVVG-A---NKLYSGSMDNSIRVWNLETLQCIQTLT  310 (393)
Q Consensus       269 ~~~~~~~v~~l~~~-~---~~l~sg~~dg~i~iwd~~~~~~~~~~~  310 (393)
                      -..|.+.+....|+ +   ++|+..-.-+.+.+-|+++++..+.+.
T Consensus       246 rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~  291 (344)
T KOG4532|consen  246 RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV  291 (344)
T ss_pred             CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence            34578888888886 2   356666667899999999987665553

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.52  E-value=8.8e-05  Score=70.58  Aligned_cols=231  Identities=13%  Similarity=0.017  Sum_probs=125.8

Q ss_pred             CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEE---EEEeCCC--cEEEEECCCCeEEEEEecCC--ceEEEEeCC
Q 016224          129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKL---YSGSKDE--TVRVWDCASGQCAGVINLGG--EVGCMISEG  201 (393)
Q Consensus       129 g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l---~s~s~dg--~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~  201 (393)
                      ..|.+.|.+.+ .. +.+......+.+=+|+|||+.+   ++...+|  .|.+.++.+++.........  ....+.++|
T Consensus       165 ~~l~~~d~dG~-~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG  242 (428)
T PRK01029        165 GELWSVDYDGQ-NL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRK  242 (428)
T ss_pred             ceEEEEcCCCC-Cc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCC
Confidence            46777777654 22 3344455667778999999752   3444443  57777888876554443332  334566889


Q ss_pred             CEEEEEcC--C----eEEEEECCCC---ceeeecC-CCCcEEEEEEeCC--EEEE-EeCCCcEEEEEeccCCccccCcee
Q 016224          202 PWIFIGVT--N----FVKAWNTQTN---TDLSLSG-PVGQVYAMAVGND--LLFA-GTQDGAILAWKFNVTTNCFEPAAS  268 (393)
Q Consensus       202 ~~l~~~~~--~----~i~v~d~~~~---~~~~~~~-~~~~v~~l~~~~~--~l~~-~~~dg~I~vwd~~~~~~~~~~~~~  268 (393)
                      +.|+...+  +    .+..|++..+   ....+.. .........|+||  .|+. ...+|...+|.+...... .....
T Consensus       243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g-~~~~~  321 (428)
T PRK01029        243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG-QSPRL  321 (428)
T ss_pred             CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc-cceEE
Confidence            87776432  2    3444676642   3333332 2234467789998  4444 445676566654321100 11122


Q ss_pred             ecCceeeEEEE--EEcCCEEEEecCC---CcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEE-eC--CCcEEEE
Q 016224          269 LKGHSLAVVSL--VVGANKLYSGSMD---NSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSC-SL--DKTIKVW  338 (393)
Q Consensus       269 ~~~~~~~v~~l--~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~-s~--dg~i~iw  338 (393)
                      +..+...+...  +++++.|+..+.+   ..|.+||+.+++... +......+....|+  +++|+.. ..  ...|.++
T Consensus       322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v  400 (428)
T PRK01029        322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI  400 (428)
T ss_pred             eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence            22222233334  4457777655432   469999999887643 33333345667776  5666543 32  3468888


Q ss_pred             EcCCCcceEEEEeecCCccEEEEEeeeC
Q 016224          339 FATDSGNLEVTYTHNEEHGVLALCGMPD  366 (393)
Q Consensus       339 d~~~~~~~~~~~~~~~~~~v~~~~~~~~  366 (393)
                      |+..++. ..+.....  .+...+|+|.
T Consensus       401 dl~~g~~-~~Lt~~~g--~~~~p~Ws~~  425 (428)
T PRK01029        401 SLITKKT-RKIVIGSG--EKRFPSWGAF  425 (428)
T ss_pred             ECCCCCE-EEeecCCC--cccCceecCC
Confidence            8865543 33332222  2445666654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.52  E-value=8.9e-06  Score=77.51  Aligned_cols=250  Identities=12%  Similarity=0.096  Sum_probs=149.1

Q ss_pred             ceEEeeEecC--cEEEecCCCeEEEEECCCC--------------cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcE
Q 016224          111 DILCRNWVQG--NCMYGEKCKFLHSWTVGDG--------------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETV  174 (393)
Q Consensus       111 ~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~--------------~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v  174 (393)
                      ...|+.|+.+  .+..|+.||.++|-.+.+.              ...-+++.||+..|.-+.|+.+.+.|-|...+|.|
T Consensus        16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI   95 (1189)
T KOG2041|consen   16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI   95 (1189)
T ss_pred             eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence            6789999854  4667999999999877632              12235778999999999999999999999999999


Q ss_pred             EEEECCCCeEEEEEec---CCceEE--EEeCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEe
Q 016224          175 RVWDCASGQCAGVINL---GGEVGC--MISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT  246 (393)
Q Consensus       175 ~iwd~~~~~~~~~~~~---~~~~~~--~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~  246 (393)
                      .||-+-+++-...+..   ...+.+  +..+|..+... .||.|.+=.++.++.....-.......+.|++|  .++.+-
T Consensus        96 iVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~  175 (1189)
T KOG2041|consen   96 IVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKK  175 (1189)
T ss_pred             EEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhh
Confidence            9999877643222111   111222  22455555543 667776666666555422222233457889998  666677


Q ss_pred             CCCcEEEEEeccCCcc-ccCc------eeecCceeeEEEEEEc----------CCEEEEecCCCcEEEeeCCCcceeeEe
Q 016224          247 QDGAILAWKFNVTTNC-FEPA------ASLKGHSLAVVSLVVG----------ANKLYSGSMDNSIRVWNLETLQCIQTL  309 (393)
Q Consensus       247 ~dg~I~vwd~~~~~~~-~~~~------~~~~~~~~~v~~l~~~----------~~~l~sg~~dg~i~iwd~~~~~~~~~~  309 (393)
                      ..|.+.++|....-.. .+..      ..+......+..+.|.          --.|+.+...|.+.|-.-.+-.....+
T Consensus       176 ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~  255 (1189)
T KOG2041|consen  176 ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV  255 (1189)
T ss_pred             cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE
Confidence            7899999997653211 0000      0111112234455553          125888888888877654432222222


Q ss_pred             ccCccceEEEEEc--CCEEEEEeCCC---------cEEEEEcCCCcceEEEEeecCCccEEEEEee
Q 016224          310 TEHTSVVMSLLCW--DQFLLSCSLDK---------TIKVWFATDSGNLEVTYTHNEEHGVLALCGM  364 (393)
Q Consensus       310 ~~~~~~v~~l~~~--~~~l~s~s~dg---------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  364 (393)
                      .. .-.+....|+  |..|+.++.|.         .|.+|.. -+..+..+......  +++++|-
T Consensus       256 dt-gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~--It~lsWE  317 (1189)
T KOG2041|consen  256 DT-GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSC--ITGLSWE  317 (1189)
T ss_pred             ec-ccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCce--eeeeEEc
Confidence            21 1345666776  66788777642         4555543 23334444433333  5566653

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.50  E-value=5.9e-05  Score=68.78  Aligned_cols=130  Identities=12%  Similarity=0.132  Sum_probs=96.0

Q ss_pred             ecceEEeeEe--cCcEEEecCCC-eEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEE
Q 016224          109 KTDILCRNWV--QGNCMYGEKCK-FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA  185 (393)
Q Consensus       109 ~~~i~c~~~~--~~~~~~g~~dg-~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  185 (393)
                      +..|.-..+.  +...+.|..|| .|-|+|..++  .++.+...-+.|.++..+++|++++.+-....+.+.|++++...
T Consensus       359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~--e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~  436 (668)
T COG4946         359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG--EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR  436 (668)
T ss_pred             CCceEEEEEccCCcceEEeccCCceEEEEecCCc--eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence            3344444443  45778899999 9999999887  44566777889999999999999999998899999999998765


Q ss_pred             EEEecCCce---EEEEeCCCEEEEE-cC----CeEEEEECCCCceeeecCCCCcEEEEEEeCC
Q 016224          186 GVINLGGEV---GCMISEGPWIFIG-VT----NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND  240 (393)
Q Consensus       186 ~~~~~~~~~---~~~~~~~~~l~~~-~~----~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~  240 (393)
                      ..-+.....   ..+.+++++++-+ -+    ..|+++|+.+++..........=.+-+|.++
T Consensus       437 ~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d  499 (668)
T COG4946         437 LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPD  499 (668)
T ss_pred             EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCC
Confidence            433333222   2344688888876 33    4899999999998866665555556677776

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.50  E-value=5.6e-06  Score=71.36  Aligned_cols=234  Identities=14%  Similarity=0.211  Sum_probs=142.9

Q ss_pred             CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-E----EEEEecCC-------------ceE--EEE-e--CCCEEE
Q 016224          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ-C----AGVINLGG-------------EVG--CMI-S--EGPWIF  205 (393)
Q Consensus       149 h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~-~----~~~~~~~~-------------~~~--~~~-~--~~~~l~  205 (393)
                      ....|+++.|...|.||++|...|.|.++.-+... |    ...++.+.             .+.  .+. +  -..+|+
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            35679999999999999999999999999865432 1    11222221             111  112 2  345788


Q ss_pred             EEcCCeEEEEECCCCc-------------------------------------e-------eeecCCCCcEEEEEEeCC-
Q 016224          206 IGVTNFVKAWNTQTNT-------------------------------------D-------LSLSGPVGQVYAMAVGND-  240 (393)
Q Consensus       206 ~~~~~~i~v~d~~~~~-------------------------------------~-------~~~~~~~~~v~~l~~~~~-  240 (393)
                      ++.|.+|++|.+....                                     .       +....|.-.+.++.++.+ 
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            8999999999876541                                     0       011345666778888887 


Q ss_pred             EEEEEeCCCcEEEEEeccCCccccCceeecCc-----eeeEEEEEEcC---CEEEEecCCCcEEEeeCCCccee------
Q 016224          241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGH-----SLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCI------  306 (393)
Q Consensus       241 ~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~-----~~~v~~l~~~~---~~l~sg~~dg~i~iwd~~~~~~~------  306 (393)
                      ..+....|-.|.+|++......+..+ .++.|     ..-|++..|++   +.+.-.+..|.|++-|++...+.      
T Consensus       185 et~lSaDdLrINLWnl~i~D~sFnIV-DiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLSADDLRINLWNLEIIDGSFNIV-DIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeeeccceeeeeccccccCCceEEE-eccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            55555678899999987765443322 22222     22345555653   45677778899999999843211      


Q ss_pred             eE----------eccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcce-EEEEeec----------CC---ccEEE
Q 016224          307 QT----------LTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNL-EVTYTHN----------EE---HGVLA  360 (393)
Q Consensus       307 ~~----------~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~----------~~---~~v~~  360 (393)
                      ..          +..-...|..+.|+  |+++++-+ --+|+|||++..+.. ..+..|.          ..   ..-..
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe  342 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE  342 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence            11          11223456777887  55666554 358999999865543 2222211          00   11233


Q ss_pred             EEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          361 LCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       361 ~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      +.|+.+..   .+++|+..+..-+|-+
T Consensus       343 isfSgd~~---~v~sgsy~NNfgiyp~  366 (460)
T COG5170         343 ISFSGDDK---HVLSGSYSNNFGIYPT  366 (460)
T ss_pred             EEecCCcc---cccccccccceeeecc
Confidence            45544433   6888888777777753

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.48  E-value=2.3e-06  Score=76.09  Aligned_cols=145  Identities=15%  Similarity=0.175  Sum_probs=92.8

Q ss_pred             EEEEEeCCCcEEEEEeccCCccccCceee--cCceeeEEEEEEcCCE--EEEecCCCcEEEeeCCCcceeeEeccCccce
Q 016224          241 LLFAGTQDGAILAWKFNVTTNCFEPAASL--KGHSLAVVSLVVGANK--LYSGSMDNSIRVWNLETLQCIQTLTEHTSVV  316 (393)
Q Consensus       241 ~l~~~~~dg~I~vwd~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~--l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v  316 (393)
                      +++++..+....++++.......++....  ......+..+..+...  .-..+....+.+|....+. ...+-+|-..+
T Consensus        76 llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-~~~~lGhvSml  154 (390)
T KOG3914|consen   76 LVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR-CEPILGHVSML  154 (390)
T ss_pred             EEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC-cchhhhhhhhh
Confidence            77777777777788777654311222221  1122223333333222  2234455666777766544 34455899999


Q ss_pred             EEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEE-eecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          317 MSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTY-THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       317 ~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      +.++++  +++|+++..|..|+|-.......+..+. +|.+-  |..++..++    ..|+++|.|++|++||+.+|+.
T Consensus       155 ~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eF--VS~isl~~~----~~LlS~sGD~tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  155 LDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEF--VSTISLTDN----YLLLSGSGDKTLRLWDITSGKL  227 (390)
T ss_pred             heeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhh--eeeeeeccC----ceeeecCCCCcEEEEecccCCc
Confidence            999998  6799999999999998776554444433 35554  555554433    2589999999999999999975

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=9.3e-05  Score=68.78  Aligned_cols=266  Identities=11%  Similarity=0.099  Sum_probs=156.3

Q ss_pred             eEEeeEecCcEEEec-CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC-----------CCcEEEEEC
Q 016224          112 ILCRNWVQGNCMYGE-KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-----------DETVRVWDC  179 (393)
Q Consensus       112 i~c~~~~~~~~~~g~-~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~-----------dg~v~iwd~  179 (393)
                      -+-+.|||-+.++.+ --.-|.+|--.+ +..++.+. |. .|.-+.|||..+||+|=+.           ...+.|||+
T Consensus       213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~-f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQGIALWGGES-FDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEeccceeeecCcc-HHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            356788887655433 344577886443 34555554 54 5888999999999999753           158999999


Q ss_pred             CCCeEEEEEecCC------ceEEEEeCCCEEEEEcCCeEEEEECCCCceee-ecCCCCcEEEEEEeCC--EEEEEeC--C
Q 016224          180 ASGQCAGVINLGG------EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLS-LSGPVGQVYAMAVGND--LLFAGTQ--D  248 (393)
Q Consensus       180 ~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~-~~~~~~~v~~l~~~~~--~l~~~~~--d  248 (393)
                      .+|...+.+....      ++..+..++++++.-..+.|.||+...-..+. ..-....|....|+|.  +||-=+.  +
T Consensus       290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~  369 (698)
T KOG2314|consen  290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN  369 (698)
T ss_pred             cccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence            9999998887632      23445568899888777999999988755542 2223456778888886  3332111  1


Q ss_pred             ---CcEEEEEeccCCccccCceeecCceeeEEEEEE--cCCEEEEe----------cCCCcEEEeeCCCcceeeEeccCc
Q 016224          249 ---GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSG----------SMDNSIRVWNLETLQCIQTLTEHT  313 (393)
Q Consensus       249 ---g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg----------~~dg~i~iwd~~~~~~~~~~~~~~  313 (393)
                         -.+.+..+.+.    +.+....-+...=..+.|  +|++|..-          +.-..+.|+.++....--..-.-.
T Consensus       370 ~~parvtL~evPs~----~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk  445 (698)
T KOG2314|consen  370 NIPARVTLMEVPSK----REIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK  445 (698)
T ss_pred             CCcceEEEEecCcc----ceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecc
Confidence               11223332222    112222223333334455  35565432          222245555555433322222345


Q ss_pred             cceEEEEEc--CCEEEEEe-C--CCcEEEEEcCC-CcceEEEEeecCCccEEEEEeeeCCCCCcEEEEE---eCCCeEEE
Q 016224          314 SVVMSLLCW--DQFLLSCS-L--DKTIKVWFATD-SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS---CNDNSVRF  384 (393)
Q Consensus       314 ~~v~~l~~~--~~~l~s~s-~--dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~---s~dg~I~i  384 (393)
                      ..|..++|.  |+.+++-+ .  ..++.+|.+.+ ......+..... .....+.|+|.+.   +++.+   |..|.+.+
T Consensus       446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~---fvvva~l~s~~g~l~F  521 (698)
T KOG2314|consen  446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGR---FVVVAALVSRRGDLEF  521 (698)
T ss_pred             hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCc---EEEEEEecccccceEE
Confidence            677788887  44443332 2  45789998873 333333222222 3467788888765   66655   45788999


Q ss_pred             EeCC
Q 016224          385 YDLP  388 (393)
Q Consensus       385 wd~~  388 (393)
                      +|+.
T Consensus       522 ~D~~  525 (698)
T KOG2314|consen  522 YDTD  525 (698)
T ss_pred             Eecc
Confidence            9986

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.43  E-value=2.1e-06  Score=72.09  Aligned_cols=140  Identities=11%  Similarity=0.173  Sum_probs=88.5

Q ss_pred             cCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC-----CCcEEEEECCCCeEEEEE-ecCC
Q 016224          119 QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-----DETVRVWDCASGQCAGVI-NLGG  192 (393)
Q Consensus       119 ~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~-----dg~v~iwd~~~~~~~~~~-~~~~  192 (393)
                      ...++++..||.+.+.+.+.-++..+.+..-...-.+.+....++.|.++..     -+..++|+++..+....- ....
T Consensus       101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~  180 (319)
T KOG4714|consen  101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALD  180 (319)
T ss_pred             CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccc
Confidence            4567789999999999977543333333322222223333344555555432     235566665443222111 1112


Q ss_pred             ceEEEE--e-CCCEEEEE-cCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEecc
Q 016224          193 EVGCMI--S-EGPWIFIG-VTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNV  258 (393)
Q Consensus       193 ~~~~~~--~-~~~~l~~~-~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~  258 (393)
                      .+.++.  + ...++++| .+|.+.+||.+.....  .+..|+.++..+-|+|.   .|+++++||.+..||..+
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            233332  2 34556666 7789999999988655  67889999999999886   999999999999999775

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.43  E-value=0.00022  Score=73.84  Aligned_cols=262  Identities=10%  Similarity=0.039  Sum_probs=154.4

Q ss_pred             cceEEeeEecC--cEEEecCCCeEEEE----ECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 016224          110 TDILCRNWVQG--NCMYGEKCKFLHSW----TVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ  183 (393)
Q Consensus       110 ~~i~c~~~~~~--~~~~g~~dg~i~vw----d~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~  183 (393)
                      ..|..+.|..+  .++.+..+|.|.+.    +..+.  .+...-.-...|.+++||||++.|+....+++|.+.. .+.+
T Consensus        76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~--~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd  152 (928)
T PF04762_consen   76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDED--EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFD  152 (928)
T ss_pred             CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc--eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccce
Confidence            47888888765  46778899999998    54433  2333333468999999999999999999999998886 4556


Q ss_pred             EEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCce---------------eeecCCCCcEEEEEEeCC--EEEEEe
Q 016224          184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTD---------------LSLSGPVGQVYAMAVGND--LLFAGT  246 (393)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~---------------~~~~~~~~~v~~l~~~~~--~l~~~~  246 (393)
                      .+.+......   -....+.+.+|+...=.-|.-..++.               -.+. ....-..|+|-+|  +||+.+
T Consensus       153 ~i~E~~l~~~---~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss  228 (928)
T PF04762_consen  153 PISEVPLDSD---DFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSS  228 (928)
T ss_pred             EEEEeecCcc---ccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEE
Confidence            6665554321   11224555565443322222222221               0122 4446677889887  777766


Q ss_pred             C---C---CcEEEEEeccCCccccCceeecCceeeEEEEEE--cCCEEEEecC---CCcEEEeeCCCcceeeEec----c
Q 016224          247 Q---D---GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSM---DNSIRVWNLETLQCIQTLT----E  311 (393)
Q Consensus       247 ~---d---g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~---dg~i~iwd~~~~~~~~~~~----~  311 (393)
                      .   .   ..|+||+-+.     .+......-.+--.+++|  +|++||+...   ...|.+|. ++|..-..|.    .
T Consensus       229 ~~~~~~~~R~iRVy~ReG-----~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~  302 (928)
T PF04762_consen  229 VEPETGSRRVIRVYSREG-----ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDP  302 (928)
T ss_pred             EEcCCCceeEEEEECCCc-----eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCC
Confidence            4   3   4688887552     111111111111234455  6778887664   34566666 4444444443    3


Q ss_pred             CccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcc-eEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          312 HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       312 ~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      ....|..+.|+  +..|+..-.| .|.+|...+-.- +...........+..+.|+|..+.  .|...+.+|.+..+++
T Consensus       303 ~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~--~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  303 EEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPL--RLHVLTSNGQYEIYDF  378 (928)
T ss_pred             CCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCC--EEEEEecCCcEEEEEE
Confidence            45678999998  5677776554 499998765431 111112222233445889887553  4666666667765553

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.42  E-value=0.00038  Score=62.26  Aligned_cols=226  Identities=14%  Similarity=0.086  Sum_probs=137.2

Q ss_pred             EeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE-------
Q 016224          114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG-------  186 (393)
Q Consensus       114 c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-------  186 (393)
                      |..-..+.++.|+.+| |++++...........  +...|..|...++-+.|++-+ |+.+.++++..-....       
T Consensus         2 c~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~   77 (275)
T PF00780_consen    2 CADSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF   77 (275)
T ss_pred             CcccCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence            4455567788999998 8999984332333333  233399999998877776654 5999999987654333       


Q ss_pred             --------EEecCCceEEEE-----eCCCEEEEEcCCeEEEEECCCC-----ceeeecCCCCcEEEEEEeCCEEEEEeCC
Q 016224          187 --------VINLGGEVGCMI-----SEGPWIFIGVTNFVKAWNTQTN-----TDLSLSGPVGQVYAMAVGNDLLFAGTQD  248 (393)
Q Consensus       187 --------~~~~~~~~~~~~-----~~~~~l~~~~~~~i~v~d~~~~-----~~~~~~~~~~~v~~l~~~~~~l~~~~~d  248 (393)
                              .+.....+..+.     .....++++....|.+|.....     +..........+.+++|.++.++.|..+
T Consensus        78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~  157 (275)
T PF00780_consen   78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSK  157 (275)
T ss_pred             cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCC
Confidence                    111222233333     2455777788888888877653     2334445568899999999988888755


Q ss_pred             CcEEEEEeccCCccccCceeec----------CceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceee--EeccCccce
Q 016224          249 GAILAWKFNVTTNCFEPAASLK----------GHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQ--TLTEHTSVV  316 (393)
Q Consensus       249 g~I~vwd~~~~~~~~~~~~~~~----------~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~--~~~~~~~~v  316 (393)
                      + ..+.|+.++...  .+....          ....++..+..+.+.++.+. |..-...|. .|+..+  .+.- ....
T Consensus       158 ~-f~~idl~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~-~~~g~fv~~-~G~~~r~~~i~W-~~~p  231 (275)
T PF00780_consen  158 G-FYLIDLNTGSPS--ELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY-DNIGVFVNK-NGEPSRKSTIQW-SSAP  231 (275)
T ss_pred             c-eEEEecCCCCce--EEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe-cceEEEEcC-CCCcCcccEEEc-CCch
Confidence            5 778888865321  111111          11223444555534333332 333334444 344333  2222 2355


Q ss_pred             EEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEE
Q 016224          317 MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTY  350 (393)
Q Consensus       317 ~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  350 (393)
                      .++.+...||++.+.+ .|.||++.+++.++.+.
T Consensus       232 ~~~~~~~pyli~~~~~-~iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  232 QSVAYSSPYLIAFSSN-SIEVRSLETGELVQTIP  264 (275)
T ss_pred             hEEEEECCEEEEECCC-EEEEEECcCCcEEEEEE
Confidence            6777787888887765 59999999887766655

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.39  E-value=0.0001  Score=67.81  Aligned_cols=264  Identities=11%  Similarity=0.074  Sum_probs=160.0

Q ss_pred             ceEEeeEecCcEEE-ecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCC---------------cE
Q 016224          111 DILCRNWVQGNCMY-GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE---------------TV  174 (393)
Q Consensus       111 ~i~c~~~~~~~~~~-g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg---------------~v  174 (393)
                      ++....|++.+.++ ...-..|.+|.-.... .+..+. | ..|..+.|+|.++||.|=+..+               .+
T Consensus        34 p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~-~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~  110 (561)
T COG5354          34 PVAYVSESPLGTYLFSEHAAGVECWGGPSKA-KLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNV  110 (561)
T ss_pred             chhheeecCcchheehhhccceEEccccchh-heeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccCce
Confidence            67778888876554 4445579999987763 444443 3 4688999999999999976543               49


Q ss_pred             EEEECCCCeEEEEEecCCce------EEEEeCCCEEEEEcCCeEEEEECCCCcee--eecCC-CCcEEEEEEeCC----E
Q 016224          175 RVWDCASGQCAGVINLGGEV------GCMISEGPWIFIGVTNFVKAWNTQTNTDL--SLSGP-VGQVYAMAVGND----L  241 (393)
Q Consensus       175 ~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~i~v~d~~~~~~~--~~~~~-~~~v~~l~~~~~----~  241 (393)
                      .+||+.++..+..+......      .-+..+..+++--....++++++ +....  .+... ...|....++|.    .
T Consensus       111 ~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~  189 (561)
T COG5354         111 FVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDE  189 (561)
T ss_pred             eEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCce
Confidence            99999999999888765433      23334555555446778999997 33322  11111 355677777775    3


Q ss_pred             EEE-----EeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEe----c-------CCCcEEEeeCCCc
Q 016224          242 LFA-----GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSG----S-------MDNSIRVWNLETL  303 (393)
Q Consensus       242 l~~-----~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg----~-------~dg~i~iwd~~~~  303 (393)
                      |+.     ....+++++|.+.....    +....-....-..+.|+  +++|+.-    .       ....++|++++..
T Consensus       190 la~~tPEk~~kpa~~~i~sIp~~s~----l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~  265 (561)
T COG5354         190 LAYWTPEKLNKPAMVRILSIPKNSV----LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER  265 (561)
T ss_pred             EEEEccccCCCCcEEEEEEccCCCe----eeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc
Confidence            332     45677888888874421    11111111222344554  4442211    1       2356888888743


Q ss_pred             ceeeEeccCccceEEEEEc--CCE--EEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC
Q 016224          304 QCIQTLTEHTSVVMSLLCW--DQF--LLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND  379 (393)
Q Consensus       304 ~~~~~~~~~~~~v~~l~~~--~~~--l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d  379 (393)
                      . +.....-.++|..+.|.  ++.  +++|-.+-.+.++|++..  +.......   .-..+.|+|...   +++.++-|
T Consensus       266 ~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~---~rNT~~fsp~~r---~il~agF~  336 (561)
T COG5354         266 S-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQ---KRNTIFFSPHER---YILFAGFD  336 (561)
T ss_pred             c-cceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCc---ccccccccCccc---EEEEecCC
Confidence            3 33333567899999996  333  445567889999998754  22222111   123455655544   77766544


Q ss_pred             ---CeEEEEeCCcee
Q 016224          380 ---NSVRFYDLPSVI  391 (393)
Q Consensus       380 ---g~I~iwd~~s~~  391 (393)
                         |.|-+||...-.
T Consensus       337 nl~gni~i~~~~~rf  351 (561)
T COG5354         337 NLQGNIEIFDPAGRF  351 (561)
T ss_pred             ccccceEEeccCCce
Confidence               667788776543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.38  E-value=1.2e-05  Score=78.57  Aligned_cols=176  Identities=13%  Similarity=0.140  Sum_probs=129.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-ceEEEEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEE
Q 016224          161 GSDKLYSGSKDETVRVWDCASGQCAGVINLGG-EVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAV  237 (393)
Q Consensus       161 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~  237 (393)
                      ++..++-|+....+..+|+.+.+..+...... .+..+..+++++++| ..|+|.+-|..+.+.+ ++..|.+.|.++..
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv  225 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV  225 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence            34567778888889999999998888877665 466667888999998 7789999999999887 89999999999999


Q ss_pred             eCCEEEEEeC---------CCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CCEEEEecCCCcEEEeeCCC---
Q 016224          238 GNDLLFAGTQ---------DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLET---  302 (393)
Q Consensus       238 ~~~~l~~~~~---------dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~---  302 (393)
                      ..++|++++.         |..|+|||++....    +..+.-+..+ .-+.+.   ...+++.+..|...+-|..+   
T Consensus       226 ~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra----l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN  300 (1118)
T KOG1275|consen  226 QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA----LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN  300 (1118)
T ss_pred             cCCeEEEeecccccccccccchhhhhhhhhhhc----cCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence            9998888876         45578999998632    2222222111 112222   45688888999999999432   


Q ss_pred             c-ceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 016224          303 L-QCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFAT  341 (393)
Q Consensus       303 ~-~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~  341 (393)
                      . .-+..+......+.++.++  ++.|+.+..+|.|.+|.-+
T Consensus       301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence            2 1233333344457777666  7899999999999999743

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.34  E-value=0.0018  Score=57.49  Aligned_cols=236  Identities=10%  Similarity=0.144  Sum_probs=142.2

Q ss_pred             eeecceEEeeEecCc--EEEec---CCCeEEEEECCC--C-cEEEEEecCCcCCEEEEEecCCCCEEEEEeC-CCcEEEE
Q 016224          107 VIKTDILCRNWVQGN--CMYGE---KCKFLHSWTVGD--G-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVW  177 (393)
Q Consensus       107 ~~~~~i~c~~~~~~~--~~~g~---~dg~i~vwd~~~--~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~-dg~v~iw  177 (393)
                      ......+-+.|+++.  ++++-   .+|.|..|.++.  | ...+.....-..+-+.+++++++++|+++.. -|.|.++
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence            334455777888775  33422   356777776663  4 1222222223344488999999999999865 5899999


Q ss_pred             ECCC-CeE---EEEEecCC------------ceEEEEeCCCEEEEE--cCCeEEEEECCCCcee----eecCCCCcEEEE
Q 016224          178 DCAS-GQC---AGVINLGG------------EVGCMISEGPWIFIG--VTNFVKAWNTQTNTDL----SLSGPVGQVYAM  235 (393)
Q Consensus       178 d~~~-~~~---~~~~~~~~------------~~~~~~~~~~~l~~~--~~~~i~v~d~~~~~~~----~~~~~~~~v~~l  235 (393)
                      -+++ |..   +..+.+.+            ....+.+++++|++.  ....|.+|++..+...    .......-...|
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi  196 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI  196 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence            9865 432   22332221            233455789888886  4458999999977654    222455667899


Q ss_pred             EEeCC---EEEEEeCCCcEEEEEeccCCccccCceeec-------C-ceeeEEEEEEcCCEEEEecC-CCcEEEeeCCC-
Q 016224          236 AVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLK-------G-HSLAVVSLVVGANKLYSGSM-DNSIRVWNLET-  302 (393)
Q Consensus       236 ~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~-------~-~~~~v~~l~~~~~~l~sg~~-dg~i~iwd~~~-  302 (393)
                      .|+|+   ..++.--+++|.+|........++.++.+.       + ....-..|+.+|++|+++.. ...|.+|.+.. 
T Consensus       197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~  276 (346)
T COG2706         197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD  276 (346)
T ss_pred             EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence            99999   344556789999999987544333333321       1 12223445556788777653 44787877653 


Q ss_pred             -cce--eeEeccCccceEEEEEc--CCEEEEEeCC-CcEEEEEcCC
Q 016224          303 -LQC--IQTLTEHTSVVMSLLCW--DQFLLSCSLD-KTIKVWFATD  342 (393)
Q Consensus       303 -~~~--~~~~~~~~~~v~~l~~~--~~~l~s~s~d-g~i~iwd~~~  342 (393)
                       +++  +.....+...-..+.++  +++|+++..+ ..|.+|....
T Consensus       277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence             322  11222222223444444  7888888775 4688887653

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=0.00013  Score=71.19  Aligned_cols=213  Identities=11%  Similarity=0.174  Sum_probs=133.5

Q ss_pred             ceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCC-EEEEEecCCCCEEEEEeCCCc-----EEEEECCCCeE
Q 016224          111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV-VSGITLPSGSDKLYSGSKDET-----VRVWDCASGQC  184 (393)
Q Consensus       111 ~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~-I~~i~~s~~~~~l~s~s~dg~-----v~iwd~~~~~~  184 (393)
                      .+.|+.-+.+.++.|+.+|.|.+.+  .+++.++.++.+... |..+....+..+|++.+.|+.     |+||+++.-+.
T Consensus        27 ~isc~~s~~~~vvigt~~G~V~~Ln--~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~  104 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGTADGRVVILN--SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK  104 (933)
T ss_pred             ceeEEcCCCceEEEeeccccEEEec--ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence            6788887888889999999987765  566777889988877 555555555579999888764     89999875421


Q ss_pred             EEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCcc
Q 016224          185 AGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNC  262 (393)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~  262 (393)
                      ...      ..++            +.++++..      .......++.+++++.+  .+++|-.+|.|..+.-.-....
T Consensus       105 n~s------P~c~------------~~~ri~~~------~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDr  160 (933)
T KOG2114|consen  105 NNS------PQCL------------YEHRIFTI------KNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDR  160 (933)
T ss_pred             CCC------ccee------------eeeeeecc------CCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcc
Confidence            100      0000            00011110      11123567888888887  8899999999998854322111


Q ss_pred             ccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcce-eeEeccCccceEEEEEc-CCE-EEEEeCCCcEEE
Q 016224          263 FEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQC-IQTLTEHTSVVMSLLCW-DQF-LLSCSLDKTIKV  337 (393)
Q Consensus       263 ~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~~-~~~-l~s~s~dg~i~i  337 (393)
                      .........-..+|+.+.+.  +..++-...-..|.+|.+....+ ...+..|.....|..++ +.. ++++ .+..|.+
T Consensus       161 gsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~~e~l~f  239 (933)
T KOG2114|consen  161 GSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA-GSEFLYF  239 (933)
T ss_pred             ccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe-cCceEEE
Confidence            11122223345688888874  44322222345789999884442 45577888888888888 333 4443 3457999


Q ss_pred             EEcCCCcceEEEE
Q 016224          338 WFATDSGNLEVTY  350 (393)
Q Consensus       338 wd~~~~~~~~~~~  350 (393)
                      |+....+....+.
T Consensus       240 Y~sd~~~~cfaf~  252 (933)
T KOG2114|consen  240 YDSDGRGPCFAFE  252 (933)
T ss_pred             EcCCCcceeeeec
Confidence            9987555444443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.29  E-value=2.7e-06  Score=51.07  Aligned_cols=37  Identities=38%  Similarity=0.564  Sum_probs=31.7

Q ss_pred             cceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEE
Q 016224          303 LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWF  339 (393)
Q Consensus       303 ~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd  339 (393)
                      ++++.++.+|...|.+++|+  +.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46788888999999999988  56899999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.27  E-value=8.2e-07  Score=86.21  Aligned_cols=189  Identities=15%  Similarity=0.232  Sum_probs=124.7

Q ss_pred             eeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC--CcEEEEECCC-
Q 016224          107 VIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD--ETVRVWDCAS-  181 (393)
Q Consensus       107 ~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d--g~v~iwd~~~-  181 (393)
                      .+....+|++|+.+  .+.+|+..|.|+++++.+| .......+|.++|+-|.=+.+|..+++.+.-  --..+|++.+ 
T Consensus      1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG-~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~ 1177 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG-SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST 1177 (1516)
T ss_pred             ccccceeeEEeecCCceEEeeeccceEEEEEccCc-cccccccccccccccccccCCcceeeeeccccCchHHHhccccc
Confidence            34468899999965  5678999999999999999 7778889999999999999999877765543  3578999864 


Q ss_pred             CeEEEEEecCCceEEEEeCCCEEEEE-cCCeEEEEECCCCcee-e-ecC---CCCcEEEEEEeCC-EEEEEeCCCcEEEE
Q 016224          182 GQCAGVINLGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-S-LSG---PVGQVYAMAVGND-LLFAGTQDGAILAW  254 (393)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~-~~~---~~~~v~~l~~~~~-~l~~~~~dg~I~vw  254 (393)
                      +...+++.....+...-. ...-+.| ......+||++++..+ + +.+   ....-....|+|. .|+.  .||  .+|
T Consensus      1178 ~~~~Hsf~ed~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndG--vLW 1252 (1516)
T KOG1832|consen 1178 GGPRHSFDEDKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDG--VLW 1252 (1516)
T ss_pred             cCccccccccceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCc--eee
Confidence            444555543333322222 2223333 4467889999998765 2 221   2223366778887 4433  355  379


Q ss_pred             EeccCCccccCceeecCceeeE-EEEEEcCCEEEEecCCCcEEEeeCCCcceeeEec
Q 016224          255 KFNVTTNCFEPAASLKGHSLAV-VSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLT  310 (393)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~~~v-~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  310 (393)
                      |++..    +.++.+......+ -.+.++++.++..+     .|||+++.+.+++..
T Consensus      1253 DvR~~----~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1253 DVRIP----EAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVP 1300 (1516)
T ss_pred             eeccH----HHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhcCc
Confidence            99876    3344444332221 12345566777665     489999998877664

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.26  E-value=1.6e-05  Score=68.55  Aligned_cols=231  Identities=11%  Similarity=0.217  Sum_probs=140.1

Q ss_pred             eecceEEeeEecCcEE--EecCCCeEEEEECCCC----cEEEEEecCCc------------CCEEEEEecCCC--CEEEE
Q 016224          108 IKTDILCRNWVQGNCM--YGEKCKFLHSWTVGDG----FKLLTQLEGHQ------------KVVSGITLPSGS--DKLYS  167 (393)
Q Consensus       108 ~~~~i~c~~~~~~~~~--~g~~dg~i~vwd~~~~----~~~~~~l~~h~------------~~I~~i~~s~~~--~~l~s  167 (393)
                      ....|+.+.|...+.+  +|...|.|.++.-...    .+....+++|.            ..|..|.|-.++  ..++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            3447888888876555  4556699999975533    24455677775            457888885543  45666


Q ss_pred             EeCCCcEEEEECCCCeE--EE-------------------------EEecCCceE-----------------E--EEeCC
Q 016224          168 GSKDETVRVWDCASGQC--AG-------------------------VINLGGEVG-----------------C--MISEG  201 (393)
Q Consensus       168 ~s~dg~v~iwd~~~~~~--~~-------------------------~~~~~~~~~-----------------~--~~~~~  201 (393)
                      .+.|.+|++|.+.....  +.                         .+..+..+.                 +  +-++.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            78899999998854311  00                         000011111                 1  11355


Q ss_pred             CEEEEEcCCeEEEEECCCCc----eeeecCC-----CCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCcee-
Q 016224          202 PWIFIGVTNFVKAWNTQTNT----DLSLSGP-----VGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAAS-  268 (393)
Q Consensus       202 ~~l~~~~~~~i~v~d~~~~~----~~~~~~~-----~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~-  268 (393)
                      ..++++.+=.|.+|++.-..    .+.+..|     ..-|++..|+|.   .+.-.+..|.|++-|+++...+...... 
T Consensus       185 et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf  264 (460)
T COG5170         185 ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF  264 (460)
T ss_pred             heeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence            66667777799999986432    1222332     345778888886   7778889999999999965432211111 


Q ss_pred             -----------ecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCC-cceeeEeccCcc------------ce---EEE
Q 016224          269 -----------LKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET-LQCIQTLTEHTS------------VV---MSL  319 (393)
Q Consensus       269 -----------~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~------------~v---~~l  319 (393)
                                 +.+-...|..+.|+  +.++++- .--+|+|||++. ..++.++.-|..            .|   ..+
T Consensus       265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR-dyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei  343 (460)
T COG5170         265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR-DYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI  343 (460)
T ss_pred             hhccCcccchhHHHHhhhhcceEEcCCCcEEEEe-ccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence                       11223445666675  3355544 456899999985 456777654422            22   345


Q ss_pred             EEc--CCEEEEEeCCCcEEEEE
Q 016224          320 LCW--DQFLLSCSLDKTIKVWF  339 (393)
Q Consensus       320 ~~~--~~~l~s~s~dg~i~iwd  339 (393)
                      .|+  ...+++|+.....-||-
T Consensus       344 sfSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         344 SFSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             EecCCcccccccccccceeeec
Confidence            555  34677777776666665

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=0.00012  Score=65.59  Aligned_cols=81  Identities=12%  Similarity=0.148  Sum_probs=65.8

Q ss_pred             EEEEEecCCcCCEEEEEecCCCC-EEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEE---eCCCEEEEE-cCCeEEEE
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI---SEGPWIFIG-VTNFVKAW  215 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~-~~~~i~v~  215 (393)
                      +....+..|...|.+|+|+|..+ +|..++.+.+|+|.|+++..++..+.....+-+..   .+..++.+| ..|.|.+|
T Consensus       184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~Vlvy  263 (463)
T KOG1645|consen  184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVY  263 (463)
T ss_pred             chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEE
Confidence            44456677889999999999776 78899999999999999999999888776654433   356677888 67899999


Q ss_pred             ECCCCc
Q 016224          216 NTQTNT  221 (393)
Q Consensus       216 d~~~~~  221 (393)
                      |++..+
T Consensus       264 D~R~~~  269 (463)
T KOG1645|consen  264 DMRQPE  269 (463)
T ss_pred             EccCCC
Confidence            998765

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.24  E-value=0.00085  Score=61.98  Aligned_cols=245  Identities=11%  Similarity=0.103  Sum_probs=144.1

Q ss_pred             CeEEEEECCCCcEEEEEecCCcCC--EE-EEEecCCCCEEEEEeCCCcEEEEECCCCeEE----EEEecCCceEEE--Ee
Q 016224          129 KFLHSWTVGDGFKLLTQLEGHQKV--VS-GITLPSGSDKLYSGSKDETVRVWDCASGQCA----GVINLGGEVGCM--IS  199 (393)
Q Consensus       129 g~i~vwd~~~~~~~~~~l~~h~~~--I~-~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~----~~~~~~~~~~~~--~~  199 (393)
                      ..+.+||..++ .++..+..-..+  .. -+.|+-+..++|-.. ...+.|+++ ++...    ..+.. ..+..+  .+
T Consensus       108 n~~~vwd~~sg-~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr~-~gi~dFsisP  183 (561)
T COG5354         108 NNVFVWDIASG-MIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLRP-VGILDFSISP  183 (561)
T ss_pred             CceeEEeccCc-eeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccccCchhhccc-cceeeEEecC
Confidence            36999999999 888888877666  55 678888888777653 347899997 33221    11111 112111  12


Q ss_pred             --CCCEEEE------EcCCeEEEEECCCCceeeecC-CCCcEEEEEEeCC--EEE--E--Ee-------CCCcEEEEEec
Q 016224          200 --EGPWIFI------GVTNFVKAWNTQTNTDLSLSG-PVGQVYAMAVGND--LLF--A--GT-------QDGAILAWKFN  257 (393)
Q Consensus       200 --~~~~l~~------~~~~~i~v~d~~~~~~~~~~~-~~~~v~~l~~~~~--~l~--~--~~-------~dg~I~vwd~~  257 (393)
                        ++..|+.      +....+++|.+..+..+.... ....=..+.|.+.  +|+  +  -.       ....+++++++
T Consensus       184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~  263 (561)
T COG5354         184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT  263 (561)
T ss_pred             CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence              2233332      245688999988766552211 1112234455443  111  1  11       12457788877


Q ss_pred             cCCccccCceeecCceeeEEEEEEc--CCE--EEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeC
Q 016224          258 VTTNCFEPAASLKGHSLAVVSLVVG--ANK--LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL  331 (393)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~l~~~--~~~--l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~  331 (393)
                      ...     +.....-.++|..+.|+  ++.  +++|-.+-.+.++|++.. +...+.  ...-..+.|+  .++++.++.
T Consensus       264 e~~-----i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp~~r~il~agF  335 (561)
T COG5354         264 ERS-----IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSPHERYILFAGF  335 (561)
T ss_pred             ccc-----cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC--CcccccccccCcccEEEEecC
Confidence            432     12222457789999995  344  555678999999999865 444443  3333444455  678888776


Q ss_pred             C---CcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe------CCCeEEEEeCCcee
Q 016224          332 D---KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC------NDNSVRFYDLPSVI  391 (393)
Q Consensus       332 d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s------~dg~I~iwd~~s~~  391 (393)
                      |   |.|-+||......+....  . .....-+.|+|+++   ++.+..      .|..|.|||+..-+
T Consensus       336 ~nl~gni~i~~~~~rf~~~~~~--~-~~n~s~~~wspd~q---F~~~~~ts~k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         336 DNLQGNIEIFDPAGRFKVAGAF--N-GLNTSYCDWSPDGQ---FYDTDTTSEKLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             CccccceEEeccCCceEEEEEe--e-cCCceEeeccCCce---EEEecCCCcccccCcceEEEEecCch
Confidence            5   679999986543332111  1 12244456877766   676653      38889999986543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.23  E-value=0.00091  Score=63.72  Aligned_cols=213  Identities=13%  Similarity=0.043  Sum_probs=116.5

Q ss_pred             CcEEEEECCCCeEEEEEecCCc--eEEEEeCCCE---EEEE-cC--CeEEEEECCCCceeeecCCCCcEEEEEEeCC--E
Q 016224          172 ETVRVWDCASGQCAGVINLGGE--VGCMISEGPW---IFIG-VT--NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--L  241 (393)
Q Consensus       172 g~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~---l~~~-~~--~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~  241 (393)
                      ..|.+.|.+.+...........  .-.+.++++.   ++++ .+  ..|.+.++.+++...+....+......|+||  .
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~  244 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL  244 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence            3677777765544332222222  2346678763   3344 22  3789999998887766666666677899998  4


Q ss_pred             EEE-EeCCC----cEEEEEeccCCccccCceeecCceeeEE--EEEEcCCEEEEec-CCCcEEEe--eCCC-cceeeEec
Q 016224          242 LFA-GTQDG----AILAWKFNVTTNCFEPAASLKGHSLAVV--SLVVGANKLYSGS-MDNSIRVW--NLET-LQCIQTLT  310 (393)
Q Consensus       242 l~~-~~~dg----~I~vwd~~~~~~~~~~~~~~~~~~~~v~--~l~~~~~~l~sg~-~dg~i~iw--d~~~-~~~~~~~~  310 (393)
                      |+. ...+|    .+..|++..+... ..............  +++++++.|+..+ .+|...||  ++.. +.....+.
T Consensus       245 Laf~s~~~g~~di~~~~~~~~~g~~g-~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt  323 (428)
T PRK01029        245 LAFISDRYGNPDLFIQSFSLETGAIG-KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT  323 (428)
T ss_pred             EEEEECCCCCcceeEEEeecccCCCC-cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence            444 33333    2334666542110 11112211111222  3445677666544 46655555  4432 23344454


Q ss_pred             cCccceEEEEEc--CCEEEEEeCC---CcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEE-EEeC--CCeE
Q 016224          311 EHTSVVMSLLCW--DQFLLSCSLD---KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLL-CSCN--DNSV  382 (393)
Q Consensus       311 ~~~~~v~~l~~~--~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~-s~s~--dg~I  382 (393)
                      .+...+....|+  ++.|+..+.+   ..|.+||+.+++. ..+...  ...+....|+|++.   .|+ ++..  ...|
T Consensus       324 ~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-~~Lt~~--~~~~~~p~wSpDG~---~L~f~~~~~g~~~L  397 (428)
T PRK01029        324 KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-YQLTTS--PENKESPSWAIDSL---HLVYSAGNSNESEL  397 (428)
T ss_pred             cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-EEccCC--CCCccceEECCCCC---EEEEEECCCCCceE
Confidence            444555667777  6777765543   3699999976654 333322  22355678887754   554 4433  3568


Q ss_pred             EEEeCCcee
Q 016224          383 RFYDLPSVI  391 (393)
Q Consensus       383 ~iwd~~s~~  391 (393)
                      .+|++.+++
T Consensus       398 ~~vdl~~g~  406 (428)
T PRK01029        398 YLISLITKK  406 (428)
T ss_pred             EEEECCCCC
Confidence            889987764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.23  E-value=0.0017  Score=61.49  Aligned_cols=203  Identities=12%  Similarity=0.043  Sum_probs=114.9

Q ss_pred             CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCE-EEEEeCC---CcEEEEECCCCeEEEEEecCCc--eEEEEeCCC
Q 016224          129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDK-LYSGSKD---ETVRVWDCASGQCAGVINLGGE--VGCMISEGP  202 (393)
Q Consensus       129 g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~-l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~  202 (393)
                      ..|.+=|.+.. .. +.+.... .+..-.|+||++. ++..+.+   ..|.++|+.+++..........  ...+.++++
T Consensus       169 ~~l~~~d~dg~-~~-~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~  245 (419)
T PRK04043        169 SNIVLADYTLT-YQ-KVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS  245 (419)
T ss_pred             ceEEEECCCCC-ce-eEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC
Confidence            35555555433 22 2232233 7788999999984 6644443   5799999998877665554433  344667887


Q ss_pred             EEEEE----cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCC--cEEEEEeccCCccccCceeecCce
Q 016224          203 WIFIG----VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDG--AILAWKFNVTTNCFEPAASLKGHS  273 (393)
Q Consensus       203 ~l~~~----~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg--~I~vwd~~~~~~~~~~~~~~~~~~  273 (393)
                      .++..    .+..|.++++.++....+..+........|+||   ++++....+  .|+++|+..+..  +.+. ..+..
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt-~~g~~  322 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVV-FHGKN  322 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--EeCc-cCCCc
Confidence            77653    224789999988876666555544445679988   444444444  467777765532  1111 11211


Q ss_pred             eeEEEEEEcCCEEEEecCC---------CcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCC-Cc--EEEEE
Q 016224          274 LAVVSLVVGANKLYSGSMD---------NSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD-KT--IKVWF  339 (393)
Q Consensus       274 ~~v~~l~~~~~~l~sg~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d-g~--i~iwd  339 (393)
                        ...+++++++|+.....         ..|.+.|+.+++. ..+.... ......|+  |+.|+..+.+ +.  |.+.+
T Consensus       323 --~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~  398 (419)
T PRK04043        323 --NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIR  398 (419)
T ss_pred             --CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence              23566677776554432         3688889887764 3443321 22234455  5555444332 22  44555


Q ss_pred             cC
Q 016224          340 AT  341 (393)
Q Consensus       340 ~~  341 (393)
                      +.
T Consensus       399 l~  400 (419)
T PRK04043        399 LN  400 (419)
T ss_pred             cC
Confidence            53

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.22  E-value=0.0031  Score=55.33  Aligned_cols=201  Identities=14%  Similarity=0.155  Sum_probs=125.8

Q ss_pred             EeeEec--CcEEE-ecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEec-CCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 016224          114 CRNWVQ--GNCMY-GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLP-SGSDKLYSGSKDETVRVWDCASGQCAGVIN  189 (393)
Q Consensus       114 c~~~~~--~~~~~-g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  189 (393)
                      +..|.+  +.++. -...+.|+.|+..++......+.+    ...+++. ++ ..|+.+..++ +.++|..+++......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEee
Confidence            345664  34444 446789999999887333333332    6777887 56 5566666554 5556999987655554


Q ss_pred             c--CC-c---e--EEEEeCCCEEEEEcC---------CeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCC
Q 016224          190 L--GG-E---V--GCMISEGPWIFIGVT---------NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDG  249 (393)
Q Consensus       190 ~--~~-~---~--~~~~~~~~~l~~~~~---------~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg  249 (393)
                      .  .. .   .  ..+.++|.+.++...         +.|..++.. ++...........+.|+|+++   ++++-+..+
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred             ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence            4  11 1   1  233467876666422         457777777 555445555667889999998   455777888


Q ss_pred             cEEEEEeccCCcccc---CceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc
Q 016224          250 AILAWKFNVTTNCFE---PAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW  322 (393)
Q Consensus       250 ~I~vwd~~~~~~~~~---~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~  322 (393)
                      .|..+++........   ....+.......-.++++  +++.++....+.|.++|.+ ++.+..+......+++++|-
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg  233 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG  233 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence            999999975432111   112222222235556665  6666666678999999988 89888888776688999995

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=1.2e-05  Score=77.55  Aligned_cols=146  Identities=17%  Similarity=0.148  Sum_probs=109.6

Q ss_pred             CCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeE
Q 016224          229 VGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQT  308 (393)
Q Consensus       229 ~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~  308 (393)
                      ...+.+++++..+|+.|+.+|.|++++....     + .....|...    ...|.++++++.||+|.|..+-+.+...+
T Consensus        39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~-----~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGN-----P-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hhHHHHHHhhcceeeeccccceEEEEecCCc-----c-ccccccccc----ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            4567788888889999999999999987653     2 223334333    55688999999999999999988887777


Q ss_pred             eccCccceEEEEEcC-------CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCe
Q 016224          309 LTEHTSVVMSLLCWD-------QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNS  381 (393)
Q Consensus       309 ~~~~~~~v~~l~~~~-------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~  381 (393)
                      +.. ..++.++++++       +.+++|+..| +.++.-+-.+.......+.....|.++.|.-+     +||-++.+| 
T Consensus       109 ~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~-----lIAWand~G-  180 (846)
T KOG2066|consen  109 YDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN-----LIAWANDDG-  180 (846)
T ss_pred             Eec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc-----EEEEecCCC-
Confidence            763 45788888874       4789999988 88775443333444455667778999999633     888887776 


Q ss_pred             EEEEeCCceee
Q 016224          382 VRFYDLPSVII  392 (393)
Q Consensus       382 I~iwd~~s~~l  392 (393)
                      |++||+++.+.
T Consensus       181 v~vyd~~~~~~  191 (846)
T KOG2066|consen  181 VKVYDTPTRQR  191 (846)
T ss_pred             cEEEeccccce
Confidence            79999988653

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.15  E-value=0.0044  Score=54.36  Aligned_cols=200  Identities=12%  Similarity=0.074  Sum_probs=120.4

Q ss_pred             EEEecC-CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEe-CCCEEEEEcCCeEEEEECCCCceeeecC-----
Q 016224          155 GITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS-EGPWIFIGVTNFVKAWNTQTNTDLSLSG-----  227 (393)
Q Consensus       155 ~i~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~i~v~d~~~~~~~~~~~-----  227 (393)
                      ++.|.+ ++.++++--..+.|..|+..+++.. .+....+...... .+..++++..+.+.++|..+++...+..     
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~   82 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPGPNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDGG   82 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSSEEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETTC
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCCCceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCCC
Confidence            567887 6666666667899999999887654 3555555555555 4556666656666777999886552221     


Q ss_pred             -CCCcEEEEEEeCC--EEEEEeCC--------CcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEE-EEecCCC
Q 016224          228 -PVGQVYAMAVGND--LLFAGTQD--------GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKL-YSGSMDN  293 (393)
Q Consensus       228 -~~~~v~~l~~~~~--~l~~~~~d--------g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l-~sg~~dg  293 (393)
                       .....+.++++++  +.++....        |.|..++.. +.    . ......-.....|+++  ++.| ++-+..+
T Consensus        83 ~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~----~-~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   83 VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK----V-TVVADGLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE----E-EEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred             cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce----E-EEEecCcccccceEECCcchheeecccccc
Confidence             3456888999988  44444332        446666655 21    1 1111122233455554  5555 4677788


Q ss_pred             cEEEeeCCCcc-------eeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEee
Q 016224          294 SIRVWNLETLQ-------CIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGM  364 (393)
Q Consensus       294 ~i~iwd~~~~~-------~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  364 (393)
                      .|..+++....       .+..+.......-.++++  +++.++....+.|.++|.. ++.+..+....  ..+++++|.
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--~~~t~~~fg  233 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV--PRPTNCAFG  233 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS--SSEEEEEEE
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC--CCEEEEEEE
Confidence            99999985321       122222222335677777  6666676778999999986 66555555442  258888884

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.11  E-value=0.0049  Score=55.05  Aligned_cols=219  Identities=16%  Similarity=0.145  Sum_probs=124.0

Q ss_pred             CCCCEEEEEeCCCcEEEEECCC-CeEEEEEecCCceEE--EEeCCCEEEEEcCCeEEEEECCCCceee------------
Q 016224          160 SGSDKLYSGSKDETVRVWDCAS-GQCAGVINLGGEVGC--MISEGPWIFIGVTNFVKAWNTQTNTDLS------------  224 (393)
Q Consensus       160 ~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~i~v~d~~~~~~~~------------  224 (393)
                      ..++.|+.|..+| |.++++.. ........... +..  +.++-+.+++-.|+.+.++++..-....            
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~-I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSS-ITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeecce-EEEEEEecccCEEEEEcCCccEEEEchhhcccccccccccccccc
Confidence            3578899999888 89999833 33333332222 333  3356667777677999999987654432            


Q ss_pred             ---ecCCCCcEEEEE-E---eCCEEEEEeCCCcEEEEEeccCCccc-cCceeecCceeeEEEEEEcCCEEEEecCCCcEE
Q 016224          225 ---LSGPVGQVYAMA-V---GNDLLFAGTQDGAILAWKFNVTTNCF-EPAASLKGHSLAVVSLVVGANKLYSGSMDNSIR  296 (393)
Q Consensus       225 ---~~~~~~~v~~l~-~---~~~~l~~~~~dg~I~vwd~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~  296 (393)
                         .......+..++ .   .....++.....+|.+|........+ ....++. -...+.++.|.++.++.|..++ ..
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~~i~v~~~~~-f~  160 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGNKICVGTSKG-FY  160 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCCEEEEEeCCc-eE
Confidence               112223344444 1   11133344445599999988754433 3444443 3366788888889888887554 88


Q ss_pred             EeeCCCcceeeEeccC------------ccceEEEEEc-CCEEEEEeCCCcEEEEEcCCCcceE-EEEeecCCccEEEEE
Q 016224          297 VWNLETLQCIQTLTEH------------TSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLE-VTYTHNEEHGVLALC  362 (393)
Q Consensus       297 iwd~~~~~~~~~~~~~------------~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~  362 (393)
                      +.|+.++.....+...            ..++..+... +.+|++ . |..-.+.|. .++... ....-..  ....+.
T Consensus       161 ~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~-~-~~~g~fv~~-~G~~~r~~~i~W~~--~p~~~~  235 (275)
T PF00780_consen  161 LIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLC-Y-DNIGVFVNK-NGEPSRKSTIQWSS--APQSVA  235 (275)
T ss_pred             EEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEE-e-cceEEEEcC-CCCcCcccEEEcCC--chhEEE
Confidence            8999877654443211            1234445555 444443 2 333333343 333322 1111111  233444


Q ss_pred             eeeCCCCCcEEEEEeCCCeEEEEeCCceeeC
Q 016224          363 GMPDSEGKPVLLCSCNDNSVRFYDLPSVIIC  393 (393)
Q Consensus       363 ~~~~~~~~~~l~s~s~dg~I~iwd~~s~~lc  393 (393)
                      +.  .+   +|+.... +.|.||++.+++++
T Consensus       236 ~~--~p---yli~~~~-~~iEV~~~~~~~lv  260 (275)
T PF00780_consen  236 YS--SP---YLIAFSS-NSIEVRSLETGELV  260 (275)
T ss_pred             EE--CC---EEEEECC-CEEEEEECcCCcEE
Confidence            42  34   7777766 45999999998763

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.10  E-value=0.0006  Score=63.71  Aligned_cols=233  Identities=16%  Similarity=0.196  Sum_probs=117.6

Q ss_pred             CEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE-EEecCCceEEEEeCCCEEEEEcCCeEEEEECCC---Cc------
Q 016224          152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG-VINLGGEVGCMISEGPWIFIGVTNFVKAWNTQT---NT------  221 (393)
Q Consensus       152 ~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~---~~------  221 (393)
                      .|+.|.|.++...|+.|...|.|.||.....+... .-.....-.....     +...++.-.+-|+..   ..      
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~di~~r~~~~~~~gf~   77 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRR-----FSLNNSPGKLTDISDRAPPSLKEGFL   77 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S-------GGGSS-SEEE-GGG--TT-SEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCccccc-----ccccCCCcceEEehhhCCcccccccC
Confidence            58999999999999999999999999876544332 0000000000000     000000111122211   00      


Q ss_pred             e-eeecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCcccc-Ccee---ecCceeeEEEEEEc-----CC-----E
Q 016224          222 D-LSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFE-PAAS---LKGHSLAVVSLVVG-----AN-----K  285 (393)
Q Consensus       222 ~-~~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~-~~~~---~~~~~~~v~~l~~~-----~~-----~  285 (393)
                      . ..+....++|++++.+.- ++++|.++|.+.|.|++.....+. .+..   .......++++.|.     ++     .
T Consensus        78 P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~  157 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC  157 (395)
T ss_dssp             EEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred             chhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence            1 133445789999999755 999999999999999987643322 0111   11133456666663     21     5


Q ss_pred             EEEecCCCcEEEeeCC--C-cce----eeEeccCccceEEEEEc----C-------------------CEEEEEeCCCcE
Q 016224          286 LYSGSMDNSIRVWNLE--T-LQC----IQTLTEHTSVVMSLLCW----D-------------------QFLLSCSLDKTI  335 (393)
Q Consensus       286 l~sg~~dg~i~iwd~~--~-~~~----~~~~~~~~~~v~~l~~~----~-------------------~~l~s~s~dg~i  335 (393)
                      +++|+..|.+.+|.+.  . +..    ......+.+++..+..-    +                   .-++....+..+
T Consensus       158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i  237 (395)
T PF08596_consen  158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI  237 (395)
T ss_dssp             EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred             EEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence            8999999999999874  1 211    12222455666655432    0                   124444557789


Q ss_pred             EEEEcCCCcceEEEEeecCCccEEEEEeeeC--CCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          336 KVWFATDSGNLEVTYTHNEEHGVLALCGMPD--SEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       336 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      +++...+.+......  .....+..+++.+.  ...+..|++-..+|.|++|.++..+
T Consensus       238 rv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk  293 (395)
T PF08596_consen  238 RVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK  293 (395)
T ss_dssp             EEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred             EEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence            999987766554444  22223344444321  1133378888999999999999865

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.08  E-value=0.0018  Score=59.44  Aligned_cols=183  Identities=13%  Similarity=0.096  Sum_probs=122.8

Q ss_pred             EEeCCCEEEEEcCCeEEEEECCCCceeeecCC-------C--CcEE------EEEE-eCCEEEEEeCCCcEEEEEeccCC
Q 016224          197 MISEGPWIFIGVTNFVKAWNTQTNTDLSLSGP-------V--GQVY------AMAV-GNDLLFAGTQDGAILAWKFNVTT  260 (393)
Q Consensus       197 ~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~-------~--~~v~------~l~~-~~~~l~~~~~dg~I~vwd~~~~~  260 (393)
                      ..++|+.++....|.|.+||..+.....+.-.       .  ..+.      ..+. +.++++..+ -|...+.+...+-
T Consensus       274 ~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~  352 (668)
T COG4946         274 ANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGY  352 (668)
T ss_pred             cCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCe
Confidence            44689999999999999999988765432211       0  0111      1112 223555554 4556665544331


Q ss_pred             ccccCceeecCceeeEE--EEEEcCCEEEEecCCC-cEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcE
Q 016224          261 NCFEPAASLKGHSLAVV--SLVVGANKLYSGSMDN-SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTI  335 (393)
Q Consensus       261 ~~~~~~~~~~~~~~~v~--~l~~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i  335 (393)
                            ....+|...|.  .+..+++-++.|..|| .+-|+|.++++ +..+...-+.|.++..+  |++++.+.....|
T Consensus       353 ------~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el  425 (668)
T COG4946         353 ------SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFEL  425 (668)
T ss_pred             ------eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEE
Confidence                  11123444443  3444567899999999 99999998776 45566677788888877  6789999888899


Q ss_pred             EEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC----CeEEEEeCCceee
Q 016224          336 KVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND----NSVRFYDLPSVII  392 (393)
Q Consensus       336 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d----g~I~iwd~~s~~l  392 (393)
                      -+.|+.++.....  ......-++.+.|+|++.   +||-+--+    ..|+++|+..+++
T Consensus       426 ~vididngnv~~i--dkS~~~lItdf~~~~nsr---~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         426 WVIDIDNGNVRLI--DKSEYGLITDFDWHPNSR---WIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             EEEEecCCCeeEe--cccccceeEEEEEcCCce---eEEEecCcceeeeeEEEEecCCCeE
Confidence            9999987754332  233345699999999877   88866544    4689999998775

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.07  E-value=0.0072  Score=55.35  Aligned_cols=171  Identities=12%  Similarity=0.151  Sum_probs=114.2

Q ss_pred             CeEEEEECCCCcEEEEEecC-CcCCEEEE---EecCC----CCEEEEEeC----------CCcEEEEECCCC-------e
Q 016224          129 KFLHSWTVGDGFKLLTQLEG-HQKVVSGI---TLPSG----SDKLYSGSK----------DETVRVWDCASG-------Q  183 (393)
Q Consensus       129 g~i~vwd~~~~~~~~~~l~~-h~~~I~~i---~~s~~----~~~l~s~s~----------dg~v~iwd~~~~-------~  183 (393)
                      ..|++.|..+. +.+.++.- ....++++   .|..+    ..+|+.|..          .|.|.++++.+.       +
T Consensus         2 s~i~l~d~~~~-~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~   80 (321)
T PF03178_consen    2 SSIRLVDPTTF-EVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK   80 (321)
T ss_dssp             -EEEEEETTTS-SEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred             cEEEEEeCCCC-eEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence            35788887665 45444432 12334444   34332    467777753          289999999884       3


Q ss_pred             EEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCc-ee--eecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCC
Q 016224          184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNT-DL--SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTT  260 (393)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~-~~--~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~  260 (393)
                      .+......+++.++..-+..++++..+.|.+|++...+ ..  ........+.++....+++++|.....|.++.++...
T Consensus        81 ~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~  160 (321)
T PF03178_consen   81 LIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEEN  160 (321)
T ss_dssp             EEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTT
T ss_pred             EEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccC
Confidence            34455667888888876777999999999999999888 54  3333445889999999999999999999999777643


Q ss_pred             ccccCceeecCceeeEEEEEE--cCCEEEEecCCCcEEEeeCC
Q 016224          261 NCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLE  301 (393)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~  301 (393)
                      ..+..+.. ......++++.+  +++.++.+..+|.|.++...
T Consensus       161 ~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  161 NKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             E-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             CEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            22222222 123445666655  55699999999999998775

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.05  E-value=0.0024  Score=60.58  Aligned_cols=184  Identities=10%  Similarity=0.074  Sum_probs=104.5

Q ss_pred             ceEEeeEecCc---EEEecC---CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEE-eCC--CcEEEEECCC
Q 016224          111 DILCRNWVQGN---CMYGEK---CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG-SKD--ETVRVWDCAS  181 (393)
Q Consensus       111 ~i~c~~~~~~~---~~~g~~---dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~-s~d--g~v~iwd~~~  181 (393)
                      .+..-.|++++   +++.+.   ...|+++|+.++ +... +....+.+....|+|||+.|+.. +.+  ..|.++|+.+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg-~~~~-lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG-KKEK-IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC-cEEE-EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            55678899874   333232   457999999887 3332 22345566678899999877643 333  4678888888


Q ss_pred             CeEEEEEecCC--ceEEEEeCCCEEEEEcCC----eEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCC-----
Q 016224          182 GQCAGVINLGG--EVGCMISEGPWIFIGVTN----FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQD-----  248 (393)
Q Consensus       182 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~----~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~d-----  248 (393)
                      ++.........  ....+.++++.|+...+.    .|.+.|+.+++...+......  ...|+|+  .|+.....     
T Consensus       267 g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~  344 (419)
T PRK04043        267 KTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEF  344 (419)
T ss_pred             CcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCccc
Confidence            76554333332  224566788766654332    788899988877533322111  2478887  44443332     


Q ss_pred             ----CcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCC-C--cEEEeeCCC
Q 016224          249 ----GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD-N--SIRVWNLET  302 (393)
Q Consensus       249 ----g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d-g--~i~iwd~~~  302 (393)
                          ..|.+.|+..+..  +.+.. .+ ...-..++++++.|+..+.+ +  .|.+.++..
T Consensus       345 ~~~~~~I~v~d~~~g~~--~~LT~-~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        345 GKNTFNLYLISTNSDYI--RRLTA-NG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CCCCcEEEEEECCCCCe--EECCC-CC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence                3677788766532  11111 11 11223455567765544322 2  355666643

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.03  E-value=0.0017  Score=59.56  Aligned_cols=135  Identities=13%  Similarity=0.165  Sum_probs=92.8

Q ss_pred             CcEEEEEeccC-C--ccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcc-eeeEec-cCccceEEEEEcC
Q 016224          249 GAILAWKFNVT-T--NCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQ-CIQTLT-EHTSVVMSLLCWD  323 (393)
Q Consensus       249 g~I~vwd~~~~-~--~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~-~~~~~v~~l~~~~  323 (393)
                      |.|.++++... .  ...+.+... ...++|+++..-+++|+++. .+.|.+|++...+ ....-. .....+.++...+
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~  139 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHST-EVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK  139 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET
T ss_pred             cEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccc
Confidence            88999999884 1  112222222 34678899887777755554 5889999998766 333222 2334788888889


Q ss_pred             CEEEEEeCCCcEEEEEcCC-CcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          324 QFLLSCSLDKTIKVWFATD-SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       324 ~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      ++++.|.....+.++.... ...+..+........++++.+.++.+   .++.+..+|.|.++..+
T Consensus       140 ~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~---~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  140 NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED---TIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS---EEEEEETTSEEEEEEE-
T ss_pred             cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc---EEEEEcCCCeEEEEEEC
Confidence            9999999999999886654 33466666656667788998887653   79999999999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.02  E-value=0.018  Score=56.40  Aligned_cols=184  Identities=15%  Similarity=0.158  Sum_probs=111.2

Q ss_pred             ecCcEEEecCCCeEEEEECCCCcEEEEEecCCc-CCEEE----------EEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224          118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-KVVSG----------ITLPSGSDKLYSGSKDETVRVWDCASGQCAG  186 (393)
Q Consensus       118 ~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~-~~I~~----------i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  186 (393)
                      ..+.+++++.++.|+-.|..++ +.+-++.... ..+..          +++  .+..++.++.|+.|.-.|.++|+.+.
T Consensus        68 ~~g~vyv~s~~g~v~AlDa~TG-k~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W  144 (527)
T TIGR03075        68 VDGVMYVTTSYSRVYALDAKTG-KELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVW  144 (527)
T ss_pred             ECCEEEEECCCCcEEEEECCCC-ceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence            3566777888999999999999 6665544211 11111          122  23567888899999999999999988


Q ss_pred             EEecCCce-------EEEEeCCCEEEEEc------CCeEEEEECCCCcee-eecCCCC----------------------
Q 016224          187 VINLGGEV-------GCMISEGPWIFIGV------TNFVKAWNTQTNTDL-SLSGPVG----------------------  230 (393)
Q Consensus       187 ~~~~~~~~-------~~~~~~~~~l~~~~------~~~i~v~d~~~~~~~-~~~~~~~----------------------  230 (393)
                      ........       .-+..++.+++...      ++.|..+|.++++.+ .......                      
T Consensus       145 ~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~  224 (527)
T TIGR03075       145 SKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP  224 (527)
T ss_pred             ecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence            77643211       11223454444322      578999999999876 2211100                      


Q ss_pred             ---------cEE-EEEEeCC--EEEEEeCC-----C-----------cEEEEEeccCCccccCceeecCc---------e
Q 016224          231 ---------QVY-AMAVGND--LLFAGTQD-----G-----------AILAWKFNVTTNCFEPAASLKGH---------S  273 (393)
Q Consensus       231 ---------~v~-~l~~~~~--~l~~~~~d-----g-----------~I~vwd~~~~~~~~~~~~~~~~~---------~  273 (393)
                               .+. .++++++  +++.+..+     +           +|.-.|+++++..+...  ...|         .
T Consensus       225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q--~~~~D~wD~d~~~~  302 (527)
T TIGR03075       225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQ--TTPHDEWDYDGVNE  302 (527)
T ss_pred             CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeee--CCCCCCccccCCCC
Confidence                     111 2355655  55555422     2           56777777775432211  1111         1


Q ss_pred             eeEEEEEEcCC---EEEEecCCCcEEEeeCCCccee
Q 016224          274 LAVVSLVVGAN---KLYSGSMDNSIRVWNLETLQCI  306 (393)
Q Consensus       274 ~~v~~l~~~~~---~l~sg~~dg~i~iwd~~~~~~~  306 (393)
                      ..+..+..+++   .++.+..+|.+.+.|.++++++
T Consensus       303 p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       303 MILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             cEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            12233334555   6889999999999999999886

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.98  E-value=0.022  Score=59.34  Aligned_cols=275  Identities=14%  Similarity=0.153  Sum_probs=154.8

Q ss_pred             eecceEEeeEecCcEEE--e----cC--CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC---CCcEEE
Q 016224          108 IKTDILCRNWVQGNCMY--G----EK--CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK---DETVRV  176 (393)
Q Consensus       108 ~~~~i~c~~~~~~~~~~--g----~~--dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~---dg~v~i  176 (393)
                      .+..-..+.|-.|+.++  .    ..  -..|+||+-+ | .+..+-+.-.+--.+++|-|.|++||+...   .-.|.+
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G-~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvF  285 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-G-ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVF  285 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-c-eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEE
Confidence            34456778898775432  1    12  3689999965 5 555544444444567899999999998865   345666


Q ss_pred             EECCCCeEEEEEecCC-----ce--EEEEeCCCEEEEEcCCeEEEEECCCCcee---ee-cCCCCcEEEEEEeCC---EE
Q 016224          177 WDCASGQCAGVINLGG-----EV--GCMISEGPWIFIGVTNFVKAWNTQTNTDL---SL-SGPVGQVYAMAVGND---LL  242 (393)
Q Consensus       177 wd~~~~~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~i~v~d~~~~~~~---~~-~~~~~~v~~l~~~~~---~l  242 (393)
                      |.- +|..-..|....     .+  ..+.+++.+|++-....|.+|...+-.-.   .+ ......+..+.|++.   .|
T Consensus       286 fEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L  364 (928)
T PF04762_consen  286 FER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRL  364 (928)
T ss_pred             Eec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEE
Confidence            663 455555555432     22  23446899999987777999998876533   11 222334555899886   67


Q ss_pred             EEEeCCCcEEEEEeccCCccc--------cCcee-----------------------ecCceeeEEEEEEcC--CEEEEe
Q 016224          243 FAGTQDGAILAWKFNVTTNCF--------EPAAS-----------------------LKGHSLAVVSLVVGA--NKLYSG  289 (393)
Q Consensus       243 ~~~~~dg~I~vwd~~~~~~~~--------~~~~~-----------------------~~~~~~~v~~l~~~~--~~l~sg  289 (393)
                      ...+.+|.+..+++.-.....        .....                       .-.-...|.++++..  ..+++-
T Consensus       365 ~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl  444 (928)
T PF04762_consen  365 HVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVL  444 (928)
T ss_pred             EEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEE
Confidence            777777777665543211000        00000                       011245677778764  359999


Q ss_pred             cCCCcEEEeeCCCcce--------eeEec----------cCccceEEEEEc-CC-EEEEEeC---CCcEEEEEcCCCcce
Q 016224          290 SMDNSIRVWNLETLQC--------IQTLT----------EHTSVVMSLLCW-DQ-FLLSCSL---DKTIKVWFATDSGNL  346 (393)
Q Consensus       290 ~~dg~i~iwd~~~~~~--------~~~~~----------~~~~~v~~l~~~-~~-~l~s~s~---dg~i~iwd~~~~~~~  346 (393)
                      ..||.|.+|.......        ...+.          .....+..+.|. .. +++....   ...+.++++......
T Consensus       445 ~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  524 (928)
T PF04762_consen  445 TSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENS  524 (928)
T ss_pred             ECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCc
Confidence            9999999998543211        11111          123345667776 33 3333333   357888887544322


Q ss_pred             EEEEe-ecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          347 EVTYT-HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       347 ~~~~~-~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      ..... ......+..+...+...   .++.-..||.|...+..
T Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~q~~~G~v~~~~~~  564 (928)
T PF04762_consen  525 ASVESSTEVDGVVLIISSSPDSG---SLYIQTNDGKVFQLSSD  564 (928)
T ss_pred             eeEEEEeccCceEEEEeeCCCCc---EEEEEECCCEEEEeecC
Confidence            22222 22222333333333221   36666678888765544

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=9.4e-05  Score=67.07  Aligned_cols=204  Identities=13%  Similarity=0.064  Sum_probs=132.2

Q ss_pred             CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCC
Q 016224          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGP  228 (393)
Q Consensus       149 h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~  228 (393)
                      |.+.|+.+... -.+++.+++.||.++.|.-..-.-+..+                                  ..+..|
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfV----------------------------------KhFraH   52 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFV----------------------------------KHFRAH   52 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeeh----------------------------------hhhHHH
Confidence            77778777654 4579999999999999985431211111                                  123456


Q ss_pred             CCcEEEEEEeCC--EEEEEeC-CCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC---EEE-EecCCCcEEEeeCC
Q 016224          229 VGQVYAMAVGND--LLFAGTQ-DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN---KLY-SGSMDNSIRVWNLE  301 (393)
Q Consensus       229 ~~~v~~l~~~~~--~l~~~~~-dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~l~-sg~~dg~i~iwd~~  301 (393)
                      ...|.+++.+-+  ++.+.+. |..++++|+..-...  ....+..-...+..+.-.++   .++ +.-.++.+.++|-.
T Consensus        53 L~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dmi--nmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~  130 (558)
T KOG0882|consen   53 LGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMI--NMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGF  130 (558)
T ss_pred             HHHHHhhhccccceeEeeccCcccceeEEEeeccchh--hhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCc
Confidence            677777777776  6777676 999999998875321  01111112223322222232   333 33467899999986


Q ss_pred             Ccc--eeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCC-cc----eEEEEe--------ecCCccEEEEEee
Q 016224          302 TLQ--CIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDS-GN----LEVTYT--------HNEEHGVLALCGM  364 (393)
Q Consensus       302 ~~~--~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~-~~----~~~~~~--------~~~~~~v~~~~~~  364 (393)
                      ...  ....-.-|..+|..+.+.  ++.+++....|.|.-|..... +.    +..-..        ........++.++
T Consensus       131 ~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efs  210 (558)
T KOG0882|consen  131 GDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFS  210 (558)
T ss_pred             CCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEc
Confidence            533  344445699999999887  678888888999999987631 11    100000        1122346778888


Q ss_pred             eCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          365 PDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       365 ~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      |++.   .+.+-+.|..|+++++.+|++
T Consensus       211 p~g~---qistl~~DrkVR~F~~KtGkl  235 (558)
T KOG0882|consen  211 PDGA---QISTLNPDRKVRGFVFKTGKL  235 (558)
T ss_pred             cccC---cccccCcccEEEEEEeccchh
Confidence            8876   788888999999999999875

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.95  E-value=8e-06  Score=79.62  Aligned_cols=198  Identities=12%  Similarity=0.195  Sum_probs=125.1

Q ss_pred             CcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEE-e--CCCEEEEE--cCC-eE
Q 016224          139 GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI-S--EGPWIFIG--VTN-FV  212 (393)
Q Consensus       139 ~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~--~~~~l~~~--~~~-~i  212 (393)
                      .++..+++..|...-+|++|+-+.++|+.|+..|.|+++++.+|........+....... +  ++..++++  ... ..
T Consensus      1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence            356677888999999999999999999999999999999999999888888776554433 2  56555543  333 67


Q ss_pred             EEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC--CEEEE
Q 016224          213 KAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYS  288 (393)
Q Consensus       213 ~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s  288 (393)
                      .+|++..-  ......-..-.++.|+..  .-+.|+......+||+.+............+....-....|++  ++++ 
T Consensus      1170 aLW~~~s~--~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1170 ALWDASST--GGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred             HHhccccc--cCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence            78987652  111112234457788776  4556666678899999987533221111111111123334443  3333 


Q ss_pred             ecCCCcEEEeeCCCcceeeEeccCccceEE-EEEcCCEEEEEeCCCcEEEEEcCCCcceEE
Q 016224          289 GSMDNSIRVWNLETLQCIQTLTEHTSVVMS-LLCWDQFLLSCSLDKTIKVWFATDSGNLEV  348 (393)
Q Consensus       289 g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  348 (393)
                        .||  .+||++..+.++.|......+.. +..+|..++.-+     .|||+++.+.+..
T Consensus      1247 --ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHS 1298 (1516)
T ss_pred             --eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhc
Confidence              344  46999988888877644322211 122245555544     3899887655443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.94  E-value=0.0061  Score=62.31  Aligned_cols=224  Identities=8%  Similarity=-0.013  Sum_probs=124.4

Q ss_pred             cceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 016224          110 TDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV  187 (393)
Q Consensus       110 ~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~  187 (393)
                      ..|..+.|..+  .++.+...|.|.+-|..+.  .+.....-...|.+++|+||++.++..+.++++.+-.. +-..+..
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E  145 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAE  145 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhc
Confidence            47888888744  6778999999999887765  22233335689999999999999999998888776543 2222222


Q ss_pred             EecCCceEEEEeCCCEEEEEcCCeEEEEECCCCcee--------ee---cCCCCcEEEEEEeCC--EEEE-----EeCCC
Q 016224          188 INLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL--------SL---SGPVGQVYAMAVGND--LLFA-----GTQDG  249 (393)
Q Consensus       188 ~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~--------~~---~~~~~~v~~l~~~~~--~l~~-----~~~dg  249 (393)
                      .+..   ......++++-+|....-.-+....++..        +.   ....+.=+.+.|-.|  ++++     ...-.
T Consensus       146 ~~L~---~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R  222 (1265)
T KOG1920|consen  146 KPLD---ADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR  222 (1265)
T ss_pred             cccc---cccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence            2110   11122344555554442222222222111        00   011222345777666  6666     22237


Q ss_pred             cEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEe---cCCCcEEEeeCCC---cceeeEeccCccceEEEEEc-
Q 016224          250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSG---SMDNSIRVWNLET---LQCIQTLTEHTSVVMSLLCW-  322 (393)
Q Consensus       250 ~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg---~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~~-  322 (393)
                      .|++||-+ +..  ..............+..++|..+++-   +.|+.|.+|.-+.   ++..-.+......+..++|+ 
T Consensus       223 kirV~drE-g~L--ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns  299 (1265)
T KOG1920|consen  223 KIRVYDRE-GAL--NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS  299 (1265)
T ss_pred             eEEEeccc-chh--hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC
Confidence            89999977 211  11111111122223333456666653   3566898887542   22222233344458999998 


Q ss_pred             -CCEEEE---EeCCCcEEEEEcCC
Q 016224          323 -DQFLLS---CSLDKTIKVWFATD  342 (393)
Q Consensus       323 -~~~l~s---~s~dg~i~iwd~~~  342 (393)
                       +..|++   ......|++|-+.+
T Consensus       300 ~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  300 NSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             CCCceeeeecccccceEEEEEecC
Confidence             556665   44445599998754

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.94  E-value=0.0013  Score=63.23  Aligned_cols=117  Identities=12%  Similarity=0.118  Sum_probs=86.5

Q ss_pred             ceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 016224          111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL  190 (393)
Q Consensus       111 ~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~  190 (393)
                      ..+|+.-..+.+..|+.-|.+++|+-..++.......+-...+..+..+++..++|.|+..|.|.++-+.......... 
T Consensus        37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~-  115 (726)
T KOG3621|consen   37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY-  115 (726)
T ss_pred             EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee-
Confidence            6688888888899999999999999887755555555556667777789999999999999999999887643221110 


Q ss_pred             CCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEecc
Q 016224          191 GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV  258 (393)
Q Consensus       191 ~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~  258 (393)
                                    ++.                .-..|...|++++|+++  .+++|...|+|..-.+..
T Consensus       116 --------------~t~----------------~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  116 --------------VTP----------------CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             --------------ecc----------------ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence                          000                01226778888888888  888888888888777665

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.90  E-value=0.011  Score=52.50  Aligned_cols=203  Identities=14%  Similarity=0.165  Sum_probs=117.6

Q ss_pred             eEEEEECCCCcEEEEEecCCcCCEE--EEEecCCCCEEEEEeC-----CCcEEEEECC-CCeEEEEEecCC---ceEEEE
Q 016224          130 FLHSWTVGDGFKLLTQLEGHQKVVS--GITLPSGSDKLYSGSK-----DETVRVWDCA-SGQCAGVINLGG---EVGCMI  198 (393)
Q Consensus       130 ~i~vwd~~~~~~~~~~l~~h~~~I~--~i~~s~~~~~l~s~s~-----dg~v~iwd~~-~~~~~~~~~~~~---~~~~~~  198 (393)
                      .+.+||..++ +....+....+.-.  .-.||+||++|++.=.     .|.|-|||.. +.+.+.++....   .-..+.
T Consensus        29 ~~~v~D~~~g-~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~  107 (305)
T PF07433_consen   29 FALVFDCRTG-QLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLM  107 (305)
T ss_pred             EEEEEEcCCC-ceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEc
Confidence            4567888877 55555543222111  2469999999998743     5899999998 567777776442   234456


Q ss_pred             eCCCEEEEEcCC-------------------eEEEEECCCCcee---ee--cCCCCcEEEEEEeCC-EEEEEeC-CCc--
Q 016224          199 SEGPWIFIGVTN-------------------FVKAWNTQTNTDL---SL--SGPVGQVYAMAVGND-LLFAGTQ-DGA--  250 (393)
Q Consensus       199 ~~~~~l~~~~~~-------------------~i~v~d~~~~~~~---~~--~~~~~~v~~l~~~~~-~l~~~~~-dg~--  250 (393)
                      ++++.|+++..|                   .+...|..+++.+   .+  .-|.-.|..|++.++ .++.+.. .|.  
T Consensus       108 pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~  187 (305)
T PF07433_consen  108 PDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPG  187 (305)
T ss_pred             CCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCC
Confidence            777666664322                   3555667777766   23  336677888888877 4444332 111  


Q ss_pred             -----EEEEEeccCCcccc-CceeecCceeeEEEEEEc--CCEE-EEecCCCcEEEeeCCCcceeeEeccCccceEEEEE
Q 016224          251 -----ILAWKFNVTTNCFE-PAASLKGHSLAVVSLVVG--ANKL-YSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC  321 (393)
Q Consensus       251 -----I~vwd~~~~~~~~~-~~~~~~~~~~~v~~l~~~--~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~  321 (393)
                           |.+++....-..+. +......-...+-+|+++  +..+ +|+=..+.+.+||..+++.+....-  ..+..++.
T Consensus       188 ~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~  265 (305)
T PF07433_consen  188 DAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAP  265 (305)
T ss_pred             ccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--Cceeeeee
Confidence                 22232221100000 000112234566777775  4455 4455678999999999998877653  34566666


Q ss_pred             cC-CEEEEEeCCCcEE
Q 016224          322 WD-QFLLSCSLDKTIK  336 (393)
Q Consensus       322 ~~-~~l~s~s~dg~i~  336 (393)
                      .+ .++++.+ .|.+.
T Consensus       266 ~~~~f~~ssG-~G~~~  280 (305)
T PF07433_consen  266 TDDGFLVSSG-QGQLI  280 (305)
T ss_pred             cCCceEEeCC-CccEE
Confidence            63 3455444 44433

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.85  E-value=0.03  Score=54.86  Aligned_cols=234  Identities=14%  Similarity=0.096  Sum_probs=133.2

Q ss_pred             eEecCcEEEecCCCeEEEEECCCCcEEEEEecC--CcCCEEEEEecC--CCCEEEEEeC------CCcEEEEECCCCeEE
Q 016224          116 NWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEG--HQKVVSGITLPS--GSDKLYSGSK------DETVRVWDCASGQCA  185 (393)
Q Consensus       116 ~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~--h~~~I~~i~~s~--~~~~l~s~s~------dg~v~iwd~~~~~~~  185 (393)
                      .+..+.+++++.|+.|.-.|..++ +.+-....  +... ..+.-+|  .+..|+.+..      +|.|..+|.++|+.+
T Consensus       117 av~~~~v~v~t~dg~l~ALDa~TG-k~~W~~~~~~~~~~-~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~l  194 (527)
T TIGR03075       117 ALYDGKVFFGTLDARLVALDAKTG-KVVWSKKNGDYKAG-YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLV  194 (527)
T ss_pred             eEECCEEEEEcCCCEEEEEECCCC-CEEeeccccccccc-ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCcee
Confidence            445667888999999999999999 66554432  1110 0111122  1234555542      689999999999988


Q ss_pred             EEEecCCce-----------------------------------EEEEeCCCEEEEEc------C-----------CeEE
Q 016224          186 GVINLGGEV-----------------------------------GCMISEGPWIFIGV------T-----------NFVK  213 (393)
Q Consensus       186 ~~~~~~~~~-----------------------------------~~~~~~~~~l~~~~------~-----------~~i~  213 (393)
                      ..+......                                   ..+.+...+++.+.      .           ..|.
T Consensus       195 W~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~v  274 (527)
T TIGR03075       195 WRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIV  274 (527)
T ss_pred             EeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEE
Confidence            776532110                                   01112344555542      1           1677


Q ss_pred             EEECCCCcee-eecC--CCC-------c--EEEEEEeCC---EEEEEeCCCcEEEEEeccCCcccc----C---c-eeec
Q 016224          214 AWNTQTNTDL-SLSG--PVG-------Q--VYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFE----P---A-ASLK  270 (393)
Q Consensus       214 v~d~~~~~~~-~~~~--~~~-------~--v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~----~---~-~~~~  270 (393)
                      -.|+++++.. .++.  |..       .  +..+.....   .++.++.+|.++++|-++++..+.    +   . ..+.
T Consensus       275 Ald~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~  354 (527)
T TIGR03075       275 ARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVD  354 (527)
T ss_pred             EEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccC
Confidence            7888888876 3322  211       1  112222333   788999999999999988754210    0   0 0000


Q ss_pred             ------------------CceeeE-----------EEEEEcC--CEEEEecC----------------------------
Q 016224          271 ------------------GHSLAV-----------VSLVVGA--NKLYSGSM----------------------------  291 (393)
Q Consensus       271 ------------------~~~~~v-----------~~l~~~~--~~l~sg~~----------------------------  291 (393)
                                        .....+           ...++++  .+++....                            
T Consensus       355 ~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p  434 (527)
T TIGR03075       355 LKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKP  434 (527)
T ss_pred             CCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCC
Confidence                              000000           0122222  12222211                            


Q ss_pred             -----CCcEEEeeCCCcceeeEeccCccceEE-EEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEe
Q 016224          292 -----DNSIRVWNLETLQCIQTLTEHTSVVMS-LLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYT  351 (393)
Q Consensus       292 -----dg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  351 (393)
                           -|.|.-+|+.+++.+...........+ +...+..++.++.||.++.+|.++++.+.....
T Consensus       435 ~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~  500 (527)
T TIGR03075       435 PPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT  500 (527)
T ss_pred             CCCCCceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence                 256888999999887776533222222 334567888888899999999999988776654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.84  E-value=0.00012  Score=70.21  Aligned_cols=154  Identities=18%  Similarity=0.160  Sum_probs=108.1

Q ss_pred             CCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCcc-----------ccCceeecCceeeEEEEEEcCC--EEEEecCCC
Q 016224          229 VGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNC-----------FEPAASLKGHSLAVVSLVVGAN--KLYSGSMDN  293 (393)
Q Consensus       229 ~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~-----------~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg  293 (393)
                      .....++.|+.+  +++.|+.||.+++..+.+....           ....+.+.+|...|.-+.|+.+  .|-+...+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            456778999876  9999999999999988765432           1233567899999999999854  588888999


Q ss_pred             cEEEeeCCCcceeeEecc--CccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCC
Q 016224          294 SIRVWNLETLQCIQTLTE--HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEG  369 (393)
Q Consensus       294 ~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  369 (393)
                      .|.+|-+-.++-...+..  ..+.|.+++|.  |..+...-.||.|.+=.+........   .-.......+.|++|.. 
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK---eLkg~~l~hv~ws~D~~-  169 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK---ELKGQLLAHVLWSEDLE-  169 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch---hcchheccceeecccHH-
Confidence            999999987766554432  45567888887  77777777777776655432211110   00111233577877765 


Q ss_pred             CcEEEEEeCCCeEEEEeCC
Q 016224          370 KPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       370 ~~~l~s~s~dg~I~iwd~~  388 (393)
                        .++.+-..|.+++||.+
T Consensus       170 --~~Lf~~ange~hlydnq  186 (1189)
T KOG2041|consen  170 --QALFKKANGETHLYDNQ  186 (1189)
T ss_pred             --HHHhhhcCCcEEEeccc
Confidence              67777778899998865

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.80  E-value=0.024  Score=50.97  Aligned_cols=228  Identities=15%  Similarity=0.164  Sum_probs=131.3

Q ss_pred             ecCCCeEEEEECCCCcEEEEEecCC---cC----CEEEEEecCCCCEEEEEe--CCCcEEEEECCCCeEEEEEecCCceE
Q 016224          125 GEKCKFLHSWTVGDGFKLLTQLEGH---QK----VVSGITLPSGSDKLYSGS--KDETVRVWDCASGQCAGVINLGGEVG  195 (393)
Q Consensus       125 g~~dg~i~vwd~~~~~~~~~~l~~h---~~----~I~~i~~s~~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~~~  195 (393)
                      |...-.|.+||..+- ++..++.-.   ..    ....++++.|+++++..-  -.-.|.|-|+..++.+.++..++-..
T Consensus        63 G~RtDvv~~~D~~TL-~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~  141 (342)
T PF06433_consen   63 GERTDVVEIWDTQTL-SPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWL  141 (342)
T ss_dssp             EEEEEEEEEEETTTT-EEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEE
T ss_pred             ccceeEEEEEecCcC-cccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEE
Confidence            555667999999886 665544321   11    123357788999887753  34689999999999999998887655


Q ss_pred             EEEe-CCCEEEEEcCCeEEEEECC-CCcee-----eecCCCCcEE-EEEEeC--CEEEEEeCCCcEEEEEeccCCccccC
Q 016224          196 CMIS-EGPWIFIGVTNFVKAWNTQ-TNTDL-----SLSGPVGQVY-AMAVGN--DLLFAGTQDGAILAWKFNVTTNCFEP  265 (393)
Q Consensus       196 ~~~~-~~~~l~~~~~~~i~v~d~~-~~~~~-----~~~~~~~~v~-~l~~~~--~~l~~~~~dg~I~vwd~~~~~~~~~~  265 (393)
                      .... +..+...+.||.+....+. .++..     .+.....++. .-.+..  +.++--+.+|.|+-.|+......+..
T Consensus       142 iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~  221 (342)
T PF06433_consen  142 IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK  221 (342)
T ss_dssp             EEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE
T ss_pred             EEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC
Confidence            5443 3445556788877776666 33332     1112222222 222222  25666788999999888776432111


Q ss_pred             ceeecC----------ceeeEEEEEEcCCEEEEec---CCC-------cEEEeeCCCcceeeEeccCccceEEEEEc--C
Q 016224          266 AASLKG----------HSLAVVSLVVGANKLYSGS---MDN-------SIRVWNLETLQCIQTLTEHTSVVMSLLCW--D  323 (393)
Q Consensus       266 ~~~~~~----------~~~~v~~l~~~~~~l~sg~---~dg-------~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~  323 (393)
                      ...+..          -.-.+.++....++|++--   .++       .|-++|+.+++.+.++... .++.+|..+  .
T Consensus       222 ~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~  300 (342)
T PF06433_consen  222 PWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDD  300 (342)
T ss_dssp             EEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSS
T ss_pred             cccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCC
Confidence            111100          0112233333344443321   111       5888899999999998742 356677777  2


Q ss_pred             C-EEEE-EeCCCcEEEEEcCCCcceEEEEeecC
Q 016224          324 Q-FLLS-CSLDKTIKVWFATDSGNLEVTYTHNE  354 (393)
Q Consensus       324 ~-~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~  354 (393)
                      + +|++ ...++.|.+||..+++.+..+.....
T Consensus       301 ~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~  333 (342)
T PF06433_consen  301 KPLLYALSAGDGTLDVYDAATGKLVRSIEQLGE  333 (342)
T ss_dssp             S-EEEEEETTTTEEEEEETTT--EEEEE---SS
T ss_pred             CcEEEEEcCCCCeEEEEeCcCCcEEeehhccCC
Confidence            2 5554 45689999999999887777665443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>smart00320 WD40 WD40 repeats

Probab=97.77  E-value=9.9e-05  Score=43.03  Aligned_cols=38  Identities=34%  Similarity=0.658  Sum_probs=34.7

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEE
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd  178 (393)
                      +.+..+..|...|.++.|.+.+.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            56677888999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.70  E-value=0.013  Score=54.86  Aligned_cols=184  Identities=16%  Similarity=0.174  Sum_probs=100.3

Q ss_pred             CCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEEC
Q 016224          138 DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNT  217 (393)
Q Consensus       138 ~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~  217 (393)
                      +++.+...++...++|++++.| |=-++|.|..+|.+.|.|++....+..-....                         
T Consensus        74 ~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-------------------------  127 (395)
T PF08596_consen   74 EGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-------------------------  127 (395)
T ss_dssp             EEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG-------------------------
T ss_pred             cccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc-------------------------
Confidence            3566777777789999999997 45599999999999999998877776543322                         


Q ss_pred             CCCceeeecCCCCcEEEEEEe-----CC-----EEEEEeCCCcEEEEEecc-CCcccc--CceeecCceeeEEEEEE-c-
Q 016224          218 QTNTDLSLSGPVGQVYAMAVG-----ND-----LLFAGTQDGAILAWKFNV-TTNCFE--PAASLKGHSLAVVSLVV-G-  282 (393)
Q Consensus       218 ~~~~~~~~~~~~~~v~~l~~~-----~~-----~l~~~~~dg~I~vwd~~~-~~~~~~--~~~~~~~~~~~v~~l~~-~-  282 (393)
                          ..........|+++.|.     .|     .+++|+..|.+.+|.+.- ....+.  .......+...+..+.. + 
T Consensus       128 ----~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~  203 (395)
T PF08596_consen  128 ----SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINA  203 (395)
T ss_dssp             ------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEET
T ss_pred             ----cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEEC
Confidence                00011223345555553     22     788888889999988753 221111  11111234445444432 1 


Q ss_pred             ------------------C---CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEE-------cCCEEEEEeCCCc
Q 016224          283 ------------------A---NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC-------WDQFLLSCSLDKT  334 (393)
Q Consensus       283 ------------------~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~-------~~~~l~s~s~dg~  334 (393)
                                        +   +.++....+..++++..-+.+..+...........+.+       .+..|++-..+|.
T Consensus       204 ~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~  283 (395)
T PF08596_consen  204 DTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGS  283 (395)
T ss_dssp             TT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSE
T ss_pred             CCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCc
Confidence                              0   12444455788999999887776555433222223333       2457888899999


Q ss_pred             EEEEEcCCCcceEEEEe
Q 016224          335 IKVWFATDSGNLEVTYT  351 (393)
Q Consensus       335 i~iwd~~~~~~~~~~~~  351 (393)
                      |++|.+...+.+....-
T Consensus       284 i~i~SLP~Lkei~~~~l  300 (395)
T PF08596_consen  284 IRIYSLPSLKEIKSVSL  300 (395)
T ss_dssp             EEEEETTT--EEEEEE-
T ss_pred             EEEEECCCchHhhcccC
Confidence            99999988776655544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.64  E-value=0.0057  Score=45.39  Aligned_cols=93  Identities=23%  Similarity=0.265  Sum_probs=64.4

Q ss_pred             CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc-CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEE
Q 016224          284 NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALC  362 (393)
Q Consensus       284 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  362 (393)
                      +.|++|+.|..|++|+-.  +.+.++... ..|+++... +..++.+..+|+|-+|+-.  ..+....   ....++++.
T Consensus        16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWRiK---SK~~~~~~~   87 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWRIK---SKNQVTSMA   87 (111)
T ss_pred             ceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeeeec---cCCCeEEEE
Confidence            479999999999999854  567777644 455666554 7889999999999999752  2222222   222355554


Q ss_pred             ee-eCCCCCcEEEEEeCCCeEEE
Q 016224          363 GM-PDSEGKPVLLCSCNDNSVRF  384 (393)
Q Consensus       363 ~~-~~~~~~~~l~s~s~dg~I~i  384 (393)
                      +. .+..+.+-|++|-.+|.|-+
T Consensus        88 ~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   88 FYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             EEcCCCCCceEEEEEecCCeEEe
Confidence            44 34445567999999998753

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.63  E-value=0.027  Score=53.51  Aligned_cols=223  Identities=12%  Similarity=0.092  Sum_probs=110.5

Q ss_pred             EecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEE-ECCCCcee
Q 016224          145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAW-NTQTNTDL  223 (393)
Q Consensus       145 ~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~-d~~~~~~~  223 (393)
                      .+....-....|.++|++++++.+ .||.-.|+.....+...  .....-..+.+.+++.+....+.|.++ +.......
T Consensus        27 ~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~--~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k  103 (443)
T PF04053_consen   27 ELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA--FGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVK  103 (443)
T ss_dssp             EEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE--EEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-
T ss_pred             cCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc--cCceeEEEEecCccEEEEECCCeEEEEEcCccccce
Confidence            333345567889999999999884 46777888744444332  223333445556666666677788886 33222211


Q ss_pred             eecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCC
Q 016224          224 SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLE  301 (393)
Q Consensus       224 ~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~  301 (393)
                      .+ .....+..|-. +.+|+..+.+ .|.+||+.+.    +.+..+...  .|..+.|+  +++++..+. ..+.|++..
T Consensus       104 ~i-~~~~~~~~If~-G~LL~~~~~~-~i~~yDw~~~----~~i~~i~v~--~vk~V~Ws~~g~~val~t~-~~i~il~~~  173 (443)
T PF04053_consen  104 SI-KLPFSVEKIFG-GNLLGVKSSD-FICFYDWETG----KLIRRIDVS--AVKYVIWSDDGELVALVTK-DSIYILKYN  173 (443)
T ss_dssp             -----SS-EEEEE--SSSEEEEETT-EEEEE-TTT------EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred             EE-cCCcccceEEc-CcEEEEECCC-CEEEEEhhHc----ceeeEEecC--CCcEEEEECCCCEEEEEeC-CeEEEEEec
Confidence            11 11223344433 4455555444 8999999987    555665533  37888887  457777764 467777654


Q ss_pred             Cc-----------ceeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCC
Q 016224          302 TL-----------QCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGK  370 (393)
Q Consensus       302 ~~-----------~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  370 (393)
                      ..           ..+..+..-...|.+..|.++.++-.... .|+.+  . ++....+......  ..-+.+.+...  
T Consensus       174 ~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkYl--~-~Ge~~~i~~ld~~--~yllgy~~~~~--  245 (443)
T PF04053_consen  174 LEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKYL--V-NGETGIIAHLDKP--LYLLGYLPKEN--  245 (443)
T ss_dssp             HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEEE--E-TTEEEEEEE-SS----EEEEEETTTT--
T ss_pred             chhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEEE--E-cCCcceEEEcCCc--eEEEEEEccCC--
Confidence            22           02333332256788888887765555555 77763  2 2333344433333  44444444322  


Q ss_pred             cEEEEEeCCCeEEEEeCCc
Q 016224          371 PVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       371 ~~l~s~s~dg~I~iwd~~s  389 (393)
                       .++....|+.|..+.++.
T Consensus       246 -~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  246 -RLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             -EEEEE-TT--EEEEE--H
T ss_pred             -EEEEEECCCCEEEEEECH
Confidence             788888999998887753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.62  E-value=0.0015  Score=61.81  Aligned_cols=72  Identities=13%  Similarity=0.204  Sum_probs=44.7

Q ss_pred             eecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224          108 IKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       108 ~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      ....+.|++++++  .++.|+.||.|.+||...+..   .+..+.-..+.++|+|+|.++++|+..|.+.+||+.-.
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t---~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT---LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCee---eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            3446666666644  456677777777777655411   12223445666777777777777777777777776543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.61  E-value=0.018  Score=54.16  Aligned_cols=225  Identities=10%  Similarity=0.105  Sum_probs=138.8

Q ss_pred             EeeEecCcEEEe-cCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC-----CCcEEEEECCCCeEEEE
Q 016224          114 CRNWVQGNCMYG-EKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-----DETVRVWDCASGQCAGV  187 (393)
Q Consensus       114 c~~~~~~~~~~g-~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~-----dg~v~iwd~~~~~~~~~  187 (393)
                      -..||.+..+++ -....|.||+..+ +.++..-.-.-..|....|+|.+++||-=..     -..+.|-.+.+++.+++
T Consensus       310 ~frWS~DdKy~Arm~~~sisIyEtps-f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt  388 (698)
T KOG2314|consen  310 IFRWSHDDKYFARMTGNSISIYETPS-FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRT  388 (698)
T ss_pred             eEEeccCCceeEEeccceEEEEecCc-eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeee
Confidence            357887755443 3346899998766 3444333334578899999999988885432     24677777777777776


Q ss_pred             EecCCceEE---EEeCCCEEEEEcC--------C---eEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEE--E-eC
Q 016224          188 INLGGEVGC---MISEGPWIFIGVT--------N---FVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFA--G-TQ  247 (393)
Q Consensus       188 ~~~~~~~~~---~~~~~~~l~~~~~--------~---~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~--~-~~  247 (393)
                      .....-..|   +-.+|.+|++-.+        +   .+.|+.++..... ........|...+|.|.  .+++  | ..
T Consensus       389 ~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~  468 (698)
T KOG2314|consen  389 KNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTV  468 (698)
T ss_pred             ccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcccc
Confidence            655443333   2357788776322        1   3455666555433 34455678888999886  3333  2 23


Q ss_pred             CCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEe---cCCCcEEEeeCCCcceeeEeccCccceEEEEEc
Q 016224          248 DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSG---SMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW  322 (393)
Q Consensus       248 dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg---~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~  322 (393)
                      ..++.+|-+++....++++..+...  ....+.|+  |.+++.+   +..|.+..+|+.-..+..+-.......+.+.|+
T Consensus       469 k~tvsfY~~e~~~~~~~lVk~~dk~--~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWD  546 (698)
T KOG2314|consen  469 KNTVSFYAVETNIKKPSLVKELDKK--FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWD  546 (698)
T ss_pred             ccceeEEEeecCCCchhhhhhhccc--ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceEC
Confidence            4678999988655555666666543  33444554  6665543   457899999987433333322233345677787


Q ss_pred             --CCEEEEEeC------CCcEEEEEcC
Q 016224          323 --DQFLLSCSL------DKTIKVWFAT  341 (393)
Q Consensus       323 --~~~l~s~s~------dg~i~iwd~~  341 (393)
                        |+|+++++.      |.--+||+..
T Consensus       547 PtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  547 PTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             CCCCEEEEeeehhhhccccceEEEEee
Confidence              789999886      3445566653

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.59  E-value=0.013  Score=57.97  Aligned_cols=148  Identities=11%  Similarity=0.130  Sum_probs=82.9

Q ss_pred             EEEEEeCCCc-----EEEEEeccCCccc--cCc--eeecC-----ceeeEEEEEEc--CCEEEEecCCCcEEEeeCC---
Q 016224          241 LLFAGTQDGA-----ILAWKFNVTTNCF--EPA--ASLKG-----HSLAVVSLVVG--ANKLYSGSMDNSIRVWNLE---  301 (393)
Q Consensus       241 ~l~~~~~dg~-----I~vwd~~~~~~~~--~~~--~~~~~-----~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~---  301 (393)
                      +|++.+.|+.     |++|+++......  ...  ..+..     ...++.+++.+  -..+|+|-.+|.|..+.-.   
T Consensus        79 ~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R  158 (933)
T KOG2114|consen   79 FLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR  158 (933)
T ss_pred             EEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh
Confidence            6666555543     8889887653211  111  11111     23445556555  4579999999999998532   


Q ss_pred             -CcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeC
Q 016224          302 -TLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN  378 (393)
Q Consensus       302 -~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~  378 (393)
                       .+....-......+|+.+.+.  +..++-+..-..|.+|.+. ++.+....-........+..+.+...   .+++++.
T Consensus       159 Drgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~---qfIca~~  234 (933)
T KOG2114|consen  159 DRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTY---QFICAGS  234 (933)
T ss_pred             ccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec-CCCcceeeeccCCccceeeecCCCCc---cEEEecC
Confidence             122222223456789999887  4442333345579999987 33322221223333455555544332   3555543


Q ss_pred             CCeEEEEeCCceeeC
Q 016224          379 DNSVRFYDLPSVIIC  393 (393)
Q Consensus       379 dg~I~iwd~~s~~lc  393 (393)
                       ..|.+|+.+....|
T Consensus       235 -e~l~fY~sd~~~~c  248 (933)
T KOG2114|consen  235 -EFLYFYDSDGRGPC  248 (933)
T ss_pred             -ceEEEEcCCCccee
Confidence             46899998876655

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.59  E-value=0.014  Score=50.54  Aligned_cols=26  Identities=12%  Similarity=0.230  Sum_probs=20.5

Q ss_pred             EeeEecCcE--EEecCCCeEEEEECCCC
Q 016224          114 CRNWVQGNC--MYGEKCKFLHSWTVGDG  139 (393)
Q Consensus       114 c~~~~~~~~--~~g~~dg~i~vwd~~~~  139 (393)
                      -++|++|..  +.+...|+|+++|+...
T Consensus        48 kl~WSpD~tlLa~a~S~G~i~vfdl~g~   75 (282)
T PF15492_consen   48 KLAWSPDCTLLAYAESTGTIRVFDLMGS   75 (282)
T ss_pred             EEEECCCCcEEEEEcCCCeEEEEecccc
Confidence            368998854  35889999999998753

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.58  E-value=0.034  Score=52.88  Aligned_cols=216  Identities=11%  Similarity=0.008  Sum_probs=108.3

Q ss_pred             ceEEeeEecC-cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 016224          111 DILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN  189 (393)
Q Consensus       111 ~i~c~~~~~~-~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  189 (393)
                      ....+.++|+ ..++...+|.-.|+..... +....     +.-...+|.+. +.+|+-....+|+|+.--+.+....++
T Consensus        34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~-r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k~i~  106 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAW-RNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVKSIK  106 (443)
T ss_dssp             --SEEEE-TTSSEEEEEETTEEEEEETTTT-EEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT----
T ss_pred             CCeeEEECCCCCEEEEEcCCEEEEEEccCC-ccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCccccceEEc
Confidence            3456677766 4556688888888885443 33222     23345678874 457777778899997543444444666


Q ss_pred             cCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccC------Cc
Q 016224          190 LGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT------TN  261 (393)
Q Consensus       190 ~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~------~~  261 (393)
                      .+..+..++. |.+|.+..++.|.+||..+++.+...... .|..+.|+++  +++..+ +..+.+++.+..      ..
T Consensus       107 ~~~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t-~~~i~il~~~~~~~~~~~~~  183 (443)
T PF04053_consen  107 LPFSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVT-KDSIYILKYNLEAVAAIPEE  183 (443)
T ss_dssp             -SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE--S-SEEEEEE-HHHHHHBTTT
T ss_pred             CCcccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEe-CCeEEEEEecchhccccccc
Confidence            6655666666 88888888889999999999888544443 3899999988  666655 457778776543      00


Q ss_pred             ccc-CceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcC--CEEEEEeCCCcEEEE
Q 016224          262 CFE-PAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVW  338 (393)
Q Consensus       262 ~~~-~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~dg~i~iw  338 (393)
                      ..+ .......-...|.+..|.++.|+-.+.. .|+.  +-.|+. .++..-..++.-+.+.+  +.+.....|+.|..+
T Consensus       184 g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~  259 (443)
T PF04053_consen  184 GVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKY--LVNGET-GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISY  259 (443)
T ss_dssp             B-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEE--EETTEE-EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEE
T ss_pred             CchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEE--EEcCCc-ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEE
Confidence            001 1222222245677788887754444444 5555  222321 12221123444444444  666666677776666


Q ss_pred             Ec
Q 016224          339 FA  340 (393)
Q Consensus       339 d~  340 (393)
                      .+
T Consensus       260 ~l  261 (443)
T PF04053_consen  260 EL  261 (443)
T ss_dssp             E-
T ss_pred             EE
Confidence            54

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PHA02713 hypothetical protein; Provisional

Probab=97.57  E-value=0.007  Score=59.70  Aligned_cols=209  Identities=10%  Similarity=0.122  Sum_probs=108.1

Q ss_pred             cEEEEECCCCeEEEEEecCCc---eEEEEeCCCEEEEEc-C------CeEEEEECCCCceeeecC---CCCcEEEEEEeC
Q 016224          173 TVRVWDCASGQCAGVINLGGE---VGCMISEGPWIFIGV-T------NFVKAWNTQTNTDLSLSG---PVGQVYAMAVGN  239 (393)
Q Consensus       173 ~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~-~------~~i~v~d~~~~~~~~~~~---~~~~v~~l~~~~  239 (393)
                      .+..||..+++-...-..+..   ......++.+.++|. +      ..+..||+.++.-.....   .........+..
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g  352 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDD  352 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECC
Confidence            567788777653332222221   122334566666553 2      357789988876442221   222233334444


Q ss_pred             CEEEEEeCCC-----cEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCC---------------------
Q 016224          240 DLLFAGTQDG-----AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDN---------------------  293 (393)
Q Consensus       240 ~~l~~~~~dg-----~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg---------------------  293 (393)
                      .+.+.|+.++     .+..||..+..  +.....+.........+..++...+.|+.++                     
T Consensus       353 ~IYviGG~~~~~~~~sve~Ydp~~~~--W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~  430 (557)
T PHA02713        353 TIYAIGGQNGTNVERTIECYTMGDDK--WKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHS  430 (557)
T ss_pred             EEEEECCcCCCCCCceEEEEECCCCe--EEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccc
Confidence            4777777654     37788877542  2322222222222233455667777777542                     


Q ss_pred             --cEEEeeCCCcce--eeEeccCccceEEEEEcCCEEEEEeCC------CcEEEEEcCCCcceEEEEeecC---CccEEE
Q 016224          294 --SIRVWNLETLQC--IQTLTEHTSVVMSLLCWDQFLLSCSLD------KTIKVWFATDSGNLEVTYTHNE---EHGVLA  360 (393)
Q Consensus       294 --~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~---~~~v~~  360 (393)
                        .+..||.++.+-  +..+.........+...++..+.|+.+      ..+..||..+............   ...+..
T Consensus       431 ~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~  510 (557)
T PHA02713        431 SNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL  510 (557)
T ss_pred             cceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence              477788876432  222222222223344456666667654      2467898876222332222211   122222


Q ss_pred             EEeeeCCCCCcEEEEEeCCC--eEEEEeCCce
Q 016224          361 LCGMPDSEGKPVLLCSCNDN--SVRFYDLPSV  390 (393)
Q Consensus       361 ~~~~~~~~~~~~l~s~s~dg--~I~iwd~~s~  390 (393)
                      +       ++++.++|+.|+  .+..||+.+.
T Consensus       511 ~-------~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        511 H-------DNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             E-------CCEEEEEeeecceeehhhcCcccc
Confidence            2       445888998888  7788887764

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.53  E-value=0.0019  Score=62.14  Aligned_cols=156  Identities=20%  Similarity=0.290  Sum_probs=91.3

Q ss_pred             CCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCce---eecCceeeEEEEEEcC--CEEEEecCCCcEEEeeC
Q 016224          228 PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAA---SLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNL  300 (393)
Q Consensus       228 ~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~---~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~iwd~  300 (393)
                      ..+.+..+.++++  ++|+|+..|.|.++-++..... ....   .-+.|...|++++|+.  ..+++|...|+|.+-.+
T Consensus        75 ~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~-~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L  153 (726)
T KOG3621|consen   75 ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR-DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL  153 (726)
T ss_pred             ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC-cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence            4455556666665  8888999999999988774321 1111   1223788999999974  47999999999999888


Q ss_pred             CCc----ceeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeec-CCccEEEEEeeeCCC--CCcEE
Q 016224          301 ETL----QCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHN-EEHGVLALCGMPDSE--GKPVL  373 (393)
Q Consensus       301 ~~~----~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~--~~~~l  373 (393)
                      .+.    -..+.+..-.+.|..+.....+|+.++.-..+ +++.+.. .+..+-... ....-...+|.|...  ....|
T Consensus       154 ~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~~-Lc~tE~e-ti~QIG~k~R~~~~~~GACF~~g~~~~q~~~I  231 (726)
T KOG3621|consen  154 DSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRCI-LCQTEAE-TITQIGKKPRKSLIDFGACFFPGQCKAQKPQI  231 (726)
T ss_pred             chhhhhccccceeeccCcceEEeecccceehHhhhhhhh-eeecchh-HHHHhcCCCcCCccccceEEeeccccCCCceE
Confidence            762    11233334456778887777776666554443 3344322 122221111 111234556666422  22345


Q ss_pred             EEEeCCCeEEEEeCC
Q 016224          374 LCSCNDNSVRFYDLP  388 (393)
Q Consensus       374 ~s~s~dg~I~iwd~~  388 (393)
                      +++ .=| .|+|.+.
T Consensus       232 yca-RPG-~RlWead  244 (726)
T KOG3621|consen  232 YCA-RPG-LRLWEAD  244 (726)
T ss_pred             EEe-cCC-CceEEee
Confidence            554 333 5777753

>PHA02713 hypothetical protein; Provisional

Probab=97.50  E-value=0.014  Score=57.67  Aligned_cols=211  Identities=7%  Similarity=0.091  Sum_probs=112.4

Q ss_pred             eEEEEECCCC-cEEEEEecCCcCCEEEEEecCCCCEEEEEeCC------CcEEEEECCCCeEEEEEecC---CceEEEEe
Q 016224          130 FLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD------ETVRVWDCASGQCAGVINLG---GEVGCMIS  199 (393)
Q Consensus       130 ~i~vwd~~~~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~---~~~~~~~~  199 (393)
                      .+..||..+. +..+..+...... .+++. -++...+.|+.+      ..+..||..+.+-...-...   ........
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~  350 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI  350 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence            5677887765 1222222211111 12222 256667777753      34778888776532222221   12233345


Q ss_pred             CCCEEEEE-cC-----CeEEEEECCCCceeeecC---CCCcEEEEEEeCCEEEEEeCCC---------------------
Q 016224          200 EGPWIFIG-VT-----NFVKAWNTQTNTDLSLSG---PVGQVYAMAVGNDLLFAGTQDG---------------------  249 (393)
Q Consensus       200 ~~~~l~~~-~~-----~~i~v~d~~~~~~~~~~~---~~~~v~~l~~~~~~l~~~~~dg---------------------  249 (393)
                      ++++.+.| .+     ..+..||..+++-.....   .......+.+...+.+.|+.++                     
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~  430 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHS  430 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccc
Confidence            66666665 32     258899998876543222   1222223344444666676543                     


Q ss_pred             --cEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCC------CcEEEeeCCC---cceeeEeccCccceEE
Q 016224          250 --AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD------NSIRVWNLET---LQCIQTLTEHTSVVMS  318 (393)
Q Consensus       250 --~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d------g~i~iwd~~~---~~~~~~~~~~~~~v~~  318 (393)
                        .+..||..+..  +..+..+............++...+.|+.+      ..+..||.++   .+.+..+.........
T Consensus       431 ~~~ve~YDP~td~--W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~  508 (557)
T PHA02713        431 SNKVIRYDTVNNI--WETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT  508 (557)
T ss_pred             cceEEEECCCCCe--EeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence              46667766542  233333222222223345566666667654      2467899886   3344555544445555


Q ss_pred             EEEcCCEEEEEeCCC--cEEEEEcCCCc
Q 016224          319 LLCWDQFLLSCSLDK--TIKVWFATDSG  344 (393)
Q Consensus       319 l~~~~~~l~s~s~dg--~i~iwd~~~~~  344 (393)
                      +...+...++|+.|+  .+..||+.+.+
T Consensus       509 ~~~~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        509 ILHDNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             EEECCEEEEEeeecceeehhhcCccccc
Confidence            666688888999888  67777776543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.48  E-value=0.02  Score=58.79  Aligned_cols=231  Identities=12%  Similarity=0.068  Sum_probs=117.8

Q ss_pred             cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc--eEEEEeCCCEEEEEcC-CeEEEEECCCCcee---
Q 016224          150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE--VGCMISEGPWIFIGVT-NFVKAWNTQTNTDL---  223 (393)
Q Consensus       150 ~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~-~~i~v~d~~~~~~~---  223 (393)
                      ...|.++.|..+.+.++.+..+|.|.+-|.++......-.....  ..++.++.++++.... .++.+ ....-..+   
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~-mT~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLF-MTKDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEE-Eeccccchhcc
Confidence            36899999999999999999999999999888754443333333  3445567777766544 33333 22222211   


Q ss_pred             ee---cCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEE--cCCEEEE-----ecCC
Q 016224          224 SL---SGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYS-----GSMD  292 (393)
Q Consensus       224 ~~---~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~s-----g~~d  292 (393)
                      .+   ....+....+-|... .-+-| ..|.....+....... ........|.   ++++|  +|.++++     ....
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrg-s~gr~~~~~~~~~ek~-~~~~~~~~~~---~~IsWRgDg~~fAVs~~~~~~~~  221 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRG-SEGRQAARQKIEKEKA-LEQIEQDDHK---TSISWRGDGEYFAVSFVESETGT  221 (1265)
T ss_pred             ccccccccccccceecccccceeeec-chhhhccccccccccc-ccchhhccCC---ceEEEccCCcEEEEEEEeccCCc
Confidence            11   001111122222221 11111 1111111111100000 0000111222   34566  5667777     2233


Q ss_pred             CcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEe---CCCcEEEEEcCCCcceEEE-EeecCCccEEEEEeeeC
Q 016224          293 NSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCS---LDKTIKVWFATDSGNLEVT-YTHNEEHGVLALCGMPD  366 (393)
Q Consensus       293 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s---~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~  366 (393)
                      ..|++||.+ +.+-.+-......-.+++|-  |..+++-.   .|+.|.+|.-.....-... ........+..++|..+
T Consensus       222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~  300 (1265)
T KOG1920|consen  222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN  300 (1265)
T ss_pred             eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence            899999977 44433222223333556665  56666543   4667888865322211111 11222233889999888


Q ss_pred             CCCCcEEEE---EeCCCeEEEEeCCce
Q 016224          367 SEGKPVLLC---SCNDNSVRFYDLPSV  390 (393)
Q Consensus       367 ~~~~~~l~s---~s~dg~I~iwd~~s~  390 (393)
                      ++   +|++   ......|++|-+.+.
T Consensus       301 sd---iLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  301 SD---ILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             CC---ceeeeecccccceEEEEEecCe
Confidence            77   7776   455556999988764

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.37  E-value=0.016  Score=43.10  Aligned_cols=96  Identities=22%  Similarity=0.316  Sum_probs=65.7

Q ss_pred             EEEEEecC---C-CCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEe--CCCEEEEEcCCeEEEEECCCCceeeec
Q 016224          153 VSGITLPS---G-SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS--EGPWIFIGVTNFVKAWNTQTNTDLSLS  226 (393)
Q Consensus       153 I~~i~~s~---~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~i~v~d~~~~~~~~~~  226 (393)
                      |++|++..   + .+.|+.|+.|..|++|+-  .+.+.++.....+..+..  .+++.++-.+|+|-+|+-.... ....
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~Rl-WRiK   78 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRL-WRIK   78 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCccee-eeec
Confidence            66777643   2 268999999999999994  477888888877777664  5555556688899999764332 2332


Q ss_pred             CCCCcEEEEEEeC---C---EEEEEeCCCcEE
Q 016224          227 GPVGQVYAMAVGN---D---LLFAGTQDGAIL  252 (393)
Q Consensus       227 ~~~~~v~~l~~~~---~---~l~~~~~dg~I~  252 (393)
                      . ...+.++.+..   +   .|++|-.+|.|-
T Consensus        79 S-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   79 S-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             c-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            2 22356655432   2   789998888874

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.35  E-value=0.1  Score=46.52  Aligned_cols=169  Identities=11%  Similarity=0.156  Sum_probs=103.8

Q ss_pred             ecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe------------------CCCcEEEEECCCCeEEE
Q 016224          125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS------------------KDETVRVWDCASGQCAG  186 (393)
Q Consensus       125 g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s------------------~dg~v~iwd~~~~~~~~  186 (393)
                      ....|.|-|||+..+++.+.++..|.-.-..|.+.||++.|+.+-                  .+..+.+-|..+|+.+.
T Consensus        73 ~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~  152 (305)
T PF07433_consen   73 ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE  152 (305)
T ss_pred             CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee
Confidence            456789999999977899999999988888899999998887762                  23455666777787777


Q ss_pred             EEecCCc-----eE--EEEeCCCEEEEE-cCC-------eEEEEECCCCce-ee-----ecCCCCcEEEEEEeCC---EE
Q 016224          187 VINLGGE-----VG--CMISEGPWIFIG-VTN-------FVKAWNTQTNTD-LS-----LSGPVGQVYAMAVGND---LL  242 (393)
Q Consensus       187 ~~~~~~~-----~~--~~~~~~~~l~~~-~~~-------~i~v~d~~~~~~-~~-----~~~~~~~v~~l~~~~~---~l  242 (393)
                      ....+..     +.  .+..++..++.. ..+       .|-+++....-. +.     .......+-+|+++.+   ..
T Consensus       153 q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia  232 (305)
T PF07433_consen  153 QVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIA  232 (305)
T ss_pred             eeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEE
Confidence            7655321     21  122355555443 111       233333332111 11     1234467889999887   45


Q ss_pred             EEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEee
Q 016224          243 FAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWN  299 (393)
Q Consensus       243 ~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd  299 (393)
                      +++-..+.+.+||..++.    .+...  .-..++.++..++-|+..+..|.+...+
T Consensus       233 ~tsPrGg~~~~~d~~tg~----~~~~~--~l~D~cGva~~~~~f~~ssG~G~~~~~~  283 (305)
T PF07433_consen  233 VTSPRGGRVAVWDAATGR----LLGSV--PLPDACGVAPTDDGFLVSSGQGQLIRLS  283 (305)
T ss_pred             EECCCCCEEEEEECCCCC----Eeecc--ccCceeeeeecCCceEEeCCCccEEEcc
Confidence            666678899999988873    22222  2234566666544344444455544444

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.34  E-value=0.0049  Score=58.41  Aligned_cols=74  Identities=16%  Similarity=0.219  Sum_probs=59.8

Q ss_pred             CCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecC
Q 016224          148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSG  227 (393)
Q Consensus       148 ~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~  227 (393)
                      ...+.|.+++++|+.+.|+.|+.||+|.+||...+.....                                       .
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~---------------------------------------k  297 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA---------------------------------------K  297 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee---------------------------------------e
Confidence            4778999999999999999999999999999876532211                                       1


Q ss_pred             CCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCC
Q 016224          228 PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT  260 (393)
Q Consensus       228 ~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~  260 (393)
                      ..-.++.++|+|+  ++++|+..|.+.+||+.-..
T Consensus       298 a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  298 AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            2234678899988  89999999999999987653

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.30  E-value=0.0034  Score=61.74  Aligned_cols=70  Identities=13%  Similarity=0.189  Sum_probs=59.8

Q ss_pred             ceEEeeEecCcEE--EecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 016224          111 DILCRNWVQGNCM--YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (393)
Q Consensus       111 ~i~c~~~~~~~~~--~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~  181 (393)
                      .++.++|.+..++  .|-.-|.+.+|...+. +.......|+.+|..+.||++|..|+|+..-|.|.+|.+..
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~-e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTT-ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEEEecCCc-eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            3456999999766  4778889999998876 56666677999999999999999999999999999999864

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.26  E-value=0.0001  Score=69.77  Aligned_cols=187  Identities=16%  Similarity=0.262  Sum_probs=117.5

Q ss_pred             ceEEeeEecC--cE--EEecCCCeEEEEECCCCcEE-EEEecCCcCCEEEEEecC-CCCEEEEEe----CCCcEEEEECC
Q 016224          111 DILCRNWVQG--NC--MYGEKCKFLHSWTVGDGFKL-LTQLEGHQKVVSGITLPS-GSDKLYSGS----KDETVRVWDCA  180 (393)
Q Consensus       111 ~i~c~~~~~~--~~--~~g~~dg~i~vwd~~~~~~~-~~~l~~h~~~I~~i~~s~-~~~~l~s~s----~dg~v~iwd~~  180 (393)
                      -+.|+++..+  .+  .+|..+|.|-+-.+.....- .....+|....++++|++ |.+.||.|-    .|-.+.|||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            5677777643  22  36889999999887644222 334567889999999987 667777762    36789999998


Q ss_pred             CC--eEEEE--Eec----CCceEEEEeCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeC---CEEEEEeCC
Q 016224          181 SG--QCAGV--INL----GGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN---DLLFAGTQD  248 (393)
Q Consensus       181 ~~--~~~~~--~~~----~~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~d  248 (393)
                      ++  .....  +..    .....|...+.+++.+| ....+.++|++........-....+..+.++|   +++++-. |
T Consensus       138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-d  216 (783)
T KOG1008|consen  138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-D  216 (783)
T ss_pred             cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-c
Confidence            76  22111  111    12244555677778887 55599999998654433333344555566555   4666654 9


Q ss_pred             CcEEEEEe-ccCCccccCceeecC----ceeeEEEEEEcCC---EEEEecC-CCcEEEeeCC
Q 016224          249 GAILAWKF-NVTTNCFEPAASLKG----HSLAVVSLVVGAN---KLYSGSM-DNSIRVWNLE  301 (393)
Q Consensus       249 g~I~vwd~-~~~~~~~~~~~~~~~----~~~~v~~l~~~~~---~l~sg~~-dg~i~iwd~~  301 (393)
                      |.|.+||. +.-.   .++..+..    ....+..++|.+.   .+++... .++|+++|+.
T Consensus       217 g~iAiwD~~rnie---npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  217 GDIAIWDTYRNIE---NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             Cceeeccchhhhc---cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            99999993 3322   22222221    1224788888753   4555554 5789999985

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.16  E-value=0.00065  Score=56.63  Aligned_cols=142  Identities=15%  Similarity=0.104  Sum_probs=81.9

Q ss_pred             EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCC-cceeeEeccCccceEEE
Q 016224          241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSL  319 (393)
Q Consensus       241 ~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l  319 (393)
                      .|..-+.||.|.-++++.....  .... .-+... ..+.--+..+++|+.+|.|.+|.... +.....+..-...|.+.
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s--~rse-~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~  107 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKES--CRSE-RFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG  107 (238)
T ss_pred             hhccccCCcccccchhhhhhhh--hhhh-hhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence            4555577888888877654321  1111 111111 22222356799999999999999862 22222222223334444


Q ss_pred             EEc---CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEE--eCCCeEEEEeCCce
Q 016224          320 LCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS--CNDNSVRFYDLPSV  390 (393)
Q Consensus       320 ~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~--s~dg~I~iwd~~s~  390 (393)
                      ...   +.+..+++.||.|+.|++.-.+.+.....|.... ...+..+.   ...+|..+  |.|..++.|++...
T Consensus       108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~-~e~~ivv~---sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES-GEELIVVG---SDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             cccccccceeEEeccCCceeeeccccCceeeeeccccCCC-cceeEEec---CCceEEeeccccchhhhhcchhhh
Confidence            333   3488899999999999998777666666555322 22222221   22266666  77888888887653

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.16  E-value=0.00014  Score=68.80  Aligned_cols=159  Identities=18%  Similarity=0.265  Sum_probs=95.0

Q ss_pred             ecCCCCcEEEEEEeCC---EEEEEe----CCCcEEEEEeccCCccccCceeec-CceeeEEEEEEc--CCEEEEecCCCc
Q 016224          225 LSGPVGQVYAMAVGND---LLFAGT----QDGAILAWKFNVTTNCFEPAASLK-GHSLAVVSLVVG--ANKLYSGSMDNS  294 (393)
Q Consensus       225 ~~~~~~~v~~l~~~~~---~l~~~~----~dg~I~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~--~~~l~sg~~dg~  294 (393)
                      ..++..+.++++|++-   .||+|-    .|..+.|||+.+.-........+. +......+++|.  ..++++|.....
T Consensus        98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~  177 (783)
T KOG1008|consen   98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRS  177 (783)
T ss_pred             cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccch
Confidence            4566778889999774   666663    356799999987621101111111 122223355664  457888888889


Q ss_pred             EEEeeCCC-cceeeEeccCccceEEEEE---cCCEEEEEeCCCcEEEEE-cCCCcceEEEEe---ecCCccEEEEEeeeC
Q 016224          295 IRVWNLET-LQCIQTLTEHTSVVMSLLC---WDQFLLSCSLDKTIKVWF-ATDSGNLEVTYT---HNEEHGVLALCGMPD  366 (393)
Q Consensus       295 i~iwd~~~-~~~~~~~~~~~~~v~~l~~---~~~~l~s~s~dg~i~iwd-~~~~~~~~~~~~---~~~~~~v~~~~~~~~  366 (393)
                      +.++|++. ......+  .+..+..+..   .++|+++-. ||.|.+|| .++-+.......   ......+..++|.|.
T Consensus       178 ~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt  254 (783)
T KOG1008|consen  178 VHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT  254 (783)
T ss_pred             hhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC
Confidence            99999983 2222222  2223333333   367877766 99999999 443333222111   122235899999998


Q ss_pred             CCCCcEEEEEeC-CCeEEEEeCC
Q 016224          367 SEGKPVLLCSCN-DNSVRFYDLP  388 (393)
Q Consensus       367 ~~~~~~l~s~s~-dg~I~iwd~~  388 (393)
                      ..+  .+++... .++|+++++.
T Consensus       255 rtg--lla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  255 RTG--LLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             Ccc--hhhhhccCcceEEEeccc
Confidence            754  4555544 5789999875

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.12  E-value=0.088  Score=52.07  Aligned_cols=219  Identities=16%  Similarity=0.222  Sum_probs=123.0

Q ss_pred             CCCEEEEEeCC------CcEEEEECCCCeEEEEEecCC---ceEEEEeCCCEEEEE-cC------CeEEEEECCCCceee
Q 016224          161 GSDKLYSGSKD------ETVRVWDCASGQCAGVINLGG---EVGCMISEGPWIFIG-VT------NFVKAWNTQTNTDLS  224 (393)
Q Consensus       161 ~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~-~~------~~i~v~d~~~~~~~~  224 (393)
                      .+.+++.|+.+      ..+..+|..+++-......+.   ......-++.+.++| .+      ..+..||..+++-..
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec
Confidence            34566667666      367888888775444333332   223334455555554 55      268889998887543


Q ss_pred             ---ecCCCCcEEEEEEeCCEEEEEeCCCc-----EEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCC---
Q 016224          225 ---LSGPVGQVYAMAVGNDLLFAGTQDGA-----ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDN---  293 (393)
Q Consensus       225 ---~~~~~~~v~~l~~~~~~l~~~~~dg~-----I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg---  293 (393)
                         +...............+.++|+.||.     |-.||..+..  +.............-...+++...++|+.++   
T Consensus       364 ~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~--W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~  441 (571)
T KOG4441|consen  364 VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK--WTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN  441 (571)
T ss_pred             cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCc--ccccCCCCcceeeeEEEEECCEEEEEcCcCCCcc
Confidence               23333333344445558899999875     6667766543  3444444434444455566788888888554   


Q ss_pred             ---cEEEeeCCCcce--eeEeccCccceEEEEEcCCEEEEEeCCCc-----EEEEEcCCCcceEEEEee---cCCccEEE
Q 016224          294 ---SIRVWNLETLQC--IQTLTEHTSVVMSLLCWDQFLLSCSLDKT-----IKVWFATDSGNLEVTYTH---NEEHGVLA  360 (393)
Q Consensus       294 ---~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~---~~~~~v~~  360 (393)
                         ++..||..+.+-  +..+..-..........+...+.|+.|+.     |..||..+.+-. .+...   .....+..
T Consensus       442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~-~v~~m~~~rs~~g~~~  520 (571)
T KOG4441|consen  442 CLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWT-MVAPMTSPRSAVGVVV  520 (571)
T ss_pred             ccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCcee-EcccCccccccccEEE
Confidence               567888876543  33333222233344445677778887763     677887654322 22211   11222222


Q ss_pred             EEeeeCCCCCcEEEEEeCCCe-----EEEEeCCc
Q 016224          361 LCGMPDSEGKPVLLCSCNDNS-----VRFYDLPS  389 (393)
Q Consensus       361 ~~~~~~~~~~~~l~s~s~dg~-----I~iwd~~s  389 (393)
                      +       ++.+.+.|+.||.     |..||..+
T Consensus       521 ~-------~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  521 L-------GGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             E-------CCEEEEEecccCccccceeEEcCCCC
Confidence            2       3447778877754     55565544

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.09  E-value=0.041  Score=53.64  Aligned_cols=173  Identities=12%  Similarity=0.100  Sum_probs=105.0

Q ss_pred             ecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC----CcEEEEECCCCeEEEEEecCCceEEEEeC
Q 016224          125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD----ETVRVWDCASGQCAGVINLGGEVGCMISE  200 (393)
Q Consensus       125 g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~  200 (393)
                      .-..+.+.+.|.++. +...++.--. ...-++++++++++++.+.+    .++..-+..+...+..+.... +..+..+
T Consensus       211 ~ey~~~vSvID~etm-eV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-iea~vkd  287 (635)
T PRK02888        211 KKYRSLFTAVDAETM-EVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-IEEAVKA  287 (635)
T ss_pred             cceeEEEEEEECccc-eEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-HHHhhhC
Confidence            334556777787765 5555554322 34567889999999888632    234444433333222222221 1123346


Q ss_pred             CCEEEEEcCCeEEEEECCC-----CceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccc----cC---
Q 016224          201 GPWIFIGVTNFVKAWNTQT-----NTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCF----EP---  265 (393)
Q Consensus       201 ~~~l~~~~~~~i~v~d~~~-----~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~----~~---  265 (393)
                      +++..+ .++.|.+.|..+     .+......-......+.++||   .++++..+.+|.|.|+......+    ++   
T Consensus       288 GK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~  366 (635)
T PRK02888        288 GKFKTI-GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA  366 (635)
T ss_pred             CCEEEE-CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence            776666 467899999998     345555666777889999998   56666679999999998754211    01   


Q ss_pred             -ceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCC
Q 016224          266 -AASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET  302 (393)
Q Consensus       266 -~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~  302 (393)
                       ..+..- ...-...+|+  ++...+-..|..|..||+.+
T Consensus       367 vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        367 VVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence             111111 1111233455  45677777899999999876

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.08  E-value=0.0012  Score=55.17  Aligned_cols=102  Identities=21%  Similarity=0.306  Sum_probs=67.8

Q ss_pred             CCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CCEEEEecCCCcEEEeeCCCcceeeEeccCc-c
Q 016224          239 NDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQCIQTLTEHT-S  314 (393)
Q Consensus       239 ~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~  314 (393)
                      ...+++|+.+|.|.+|............   ..-...|.++-+.   +.+..++..||.|+.|++.-.+.+.....|. .
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~---~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~  146 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV---CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE  146 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhh---hcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC
Confidence            3489999999999999887432111111   1112233333332   4488999999999999999888877777777 4


Q ss_pred             ceEEEEEc--CCEEEEE--eCCCcEEEEEcCCC
Q 016224          315 VVMSLLCW--DQFLLSC--SLDKTIKVWFATDS  343 (393)
Q Consensus       315 ~v~~l~~~--~~~l~s~--s~dg~i~iwd~~~~  343 (393)
                      ++..+...  +.+++.+  |.|..++.|++...
T Consensus       147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  147 SGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             CcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            55444443  5677777  77888888887543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.08  E-value=0.091  Score=51.94  Aligned_cols=210  Identities=15%  Similarity=0.236  Sum_probs=120.5

Q ss_pred             CeEEEEECCCC-cEEEEEecCCcCCEEEEEecCCCCEEEEEeCC------CcEEEEECCCCeEEEEEecCC---ceEEEE
Q 016224          129 KFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD------ETVRVWDCASGQCAGVINLGG---EVGCMI  198 (393)
Q Consensus       129 g~i~vwd~~~~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~---~~~~~~  198 (393)
                      ..+..+|..++ +..+..+. +...-.++++. ++...++|+.|      .++..||..+.+=...-....   ......
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~  378 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV  378 (571)
T ss_pred             ceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence            46888888776 34444444 23334445544 44677888888      367788887776332222221   223334


Q ss_pred             eCCCEEEEE-cCC-----eEEEEECCCCceeeec---CCCCcEEEEEEeCCEEEEEeCCC------cEEEEEeccCCccc
Q 016224          199 SEGPWIFIG-VTN-----FVKAWNTQTNTDLSLS---GPVGQVYAMAVGNDLLFAGTQDG------AILAWKFNVTTNCF  263 (393)
Q Consensus       199 ~~~~~l~~~-~~~-----~i~v~d~~~~~~~~~~---~~~~~v~~l~~~~~~l~~~~~dg------~I~vwd~~~~~~~~  263 (393)
                      -++.+.++| .++     ++..||..+.+-....   ......-...+...+.++|+.++      ++..||..+..  +
T Consensus       379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~--W  456 (571)
T KOG4441|consen  379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT--W  456 (571)
T ss_pred             ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc--e
Confidence            466666665 444     6888999888754222   22333344445555777777554      45677776653  3


Q ss_pred             cCceeecCceeeEEEEEEcCCEEEEecCCC-----cEEEeeCCCcce--eeEeccCccceEEEEEcCCEEEEEeCCCc--
Q 016224          264 EPAASLKGHSLAVVSLVVGANKLYSGSMDN-----SIRVWNLETLQC--IQTLTEHTSVVMSLLCWDQFLLSCSLDKT--  334 (393)
Q Consensus       264 ~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg-----~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~l~s~s~dg~--  334 (393)
                      ..+..+..-.........++.+.+.|+.|+     +|..||.++.+-  +..+......+......+...++|+.|+.  
T Consensus       457 ~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~  536 (571)
T KOG4441|consen  457 TLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNN  536 (571)
T ss_pred             eecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccc
Confidence            333333333333334456677788888776     377788876543  33333344444455556778888887764  


Q ss_pred             ---EEEEEcCC
Q 016224          335 ---IKVWFATD  342 (393)
Q Consensus       335 ---i~iwd~~~  342 (393)
                         |..||..+
T Consensus       537 l~~ve~ydp~~  547 (571)
T KOG4441|consen  537 LNTVECYDPET  547 (571)
T ss_pred             cceeEEcCCCC
Confidence               55565543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.08  E-value=0.3  Score=49.86  Aligned_cols=223  Identities=11%  Similarity=0.086  Sum_probs=116.7

Q ss_pred             ecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCC--------EEEEEec----------------CCCCEEEEEeCCCc
Q 016224          118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV--------VSGITLP----------------SGSDKLYSGSKDET  173 (393)
Q Consensus       118 ~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~--------I~~i~~s----------------~~~~~l~s~s~dg~  173 (393)
                      ..+.+++++.++.|.-.|..++ +.+-++......        ...+++.                ..+.+|+.++.|+.
T Consensus       193 vgg~lYv~t~~~~V~ALDa~TG-k~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~  271 (764)
T TIGR03074       193 VGDTLYLCTPHNKVIALDAATG-KEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR  271 (764)
T ss_pred             ECCEEEEECCCCeEEEEECCCC-cEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence            3566778888999999999999 666665432211        1123331                13458888999999


Q ss_pred             EEEEECCCCeEEEEEecCCceE------------------EEEeCCCEEEEEc----------CCeEEEEECCCCcee-e
Q 016224          174 VRVWDCASGQCAGVINLGGEVG------------------CMISEGPWIFIGV----------TNFVKAWNTQTNTDL-S  224 (393)
Q Consensus       174 v~iwd~~~~~~~~~~~~~~~~~------------------~~~~~~~~l~~~~----------~~~i~v~d~~~~~~~-~  224 (393)
                      |.-.|.++|+....+.....+.                  -+..++.+++.+.          ++.|+-+|.++++.+ .
T Consensus       272 LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~  351 (764)
T TIGR03074       272 LIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA  351 (764)
T ss_pred             EEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence            9999999999887765433221                  1122444444322          468999999999887 3


Q ss_pred             ecCCCCcEEEEEEeCCEEEEEeCCC-cEEEEEeccCCccccCceeecCceeeEEEEEEcCCE-EEEecCCCcEEEeeCCC
Q 016224          225 LSGPVGQVYAMAVGNDLLFAGTQDG-AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK-LYSGSMDNSIRVWNLET  302 (393)
Q Consensus       225 ~~~~~~~v~~l~~~~~~l~~~~~dg-~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~sg~~dg~i~iwd~~~  302 (393)
                      ...-...........+....++.+. ....+|.+.+.     +..-.+....  .. +.+++ .......+.|.-.|.+|
T Consensus       352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~gl-----vy~ptGn~~p--d~-~g~~r~~~~n~y~~slvALD~~T  423 (764)
T TIGR03074       352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGL-----VYLPMGNQTP--DQ-WGGDRTPADEKYSSSLVALDATT  423 (764)
T ss_pred             EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCe-----EEEeCCCccc--cc-cCCccccCcccccceEEEEeCCC
Confidence            3211000000000111111111110 11122222210     0000000000  00 00000 11112345677788888


Q ss_pred             cceeeEecc-Cc---------cc-eEEEEE-cCC---EEEEEeCCCcEEEEEcCCCcceEEE
Q 016224          303 LQCIQTLTE-HT---------SV-VMSLLC-WDQ---FLLSCSLDKTIKVWFATDSGNLEVT  349 (393)
Q Consensus       303 ~~~~~~~~~-~~---------~~-v~~l~~-~~~---~l~s~s~dg~i~iwd~~~~~~~~~~  349 (393)
                      |+..-.++. |.         .+ ...+.. .++   .++.++.+|.+.++|-++++.+...
T Consensus       424 Gk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       424 GKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             CceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            888777654 21         11 123333 342   7889999999999999988876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.00  E-value=0.21  Score=43.74  Aligned_cols=196  Identities=14%  Similarity=0.160  Sum_probs=120.7

Q ss_pred             eEEeeEecCcEEEecCCCeEEEEECCCCcEEEEE-ecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 016224          112 ILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQ-LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL  190 (393)
Q Consensus       112 i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~-l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~  190 (393)
                      ..|.-|........+.....-+|..+-....... +.+-...|.++.|+|+.+.|++......-.||=..+|+.++++..
T Consensus        46 f~~a~~k~~~~~~~~~~r~~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL  125 (316)
T COG3204          46 FPCAWFKAGQTNGLDLSRYIARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL  125 (316)
T ss_pred             eeeEEEeccccccccccchhhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc
Confidence            4455555555444444455666665432222222 445566699999999999999999888888888888999999876


Q ss_pred             CC----ceEEEEeCCCEEEEE-cCCeEEEEECCCCcee--------eec--CC-CCcEEEEEEeCC--EEEEEeCCCcEE
Q 016224          191 GG----EVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL--------SLS--GP-VGQVYAMAVGND--LLFAGTQDGAIL  252 (393)
Q Consensus       191 ~~----~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~--------~~~--~~-~~~v~~l~~~~~--~l~~~~~dg~I~  252 (393)
                      ..    +....+.++.++++. .+..+.++.+......        .+.  .+ ......++|++.  .|+.+-+..-+.
T Consensus       126 ~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~  205 (316)
T COG3204         126 TGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIG  205 (316)
T ss_pred             cccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcE
Confidence            53    233445567777666 5567777776655322        111  12 445668899887  788888888888


Q ss_pred             EEEeccCCccccCceeecCc-------eeeEEEEEEc---CCEEEEecCCCcEEEeeCCCcceeeEe
Q 016224          253 AWKFNVTTNCFEPAASLKGH-------SLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQCIQTL  309 (393)
Q Consensus       253 vwd~~~~~~~~~~~~~~~~~-------~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~  309 (393)
                      ||........... .....+       -..+.++.++   +.+++-+.+++.+.-.|.. |..+..+
T Consensus       206 I~~~~~~~~~l~~-~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l  270 (316)
T COG3204         206 IFEVTQSPSSLSV-HASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELL  270 (316)
T ss_pred             EEEEecCCccccc-ccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence            8877654321111 111111       1234555565   4467777777777777764 4444444

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.98  E-value=0.2  Score=43.05  Aligned_cols=136  Identities=15%  Similarity=0.072  Sum_probs=89.4

Q ss_pred             CcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEE---
Q 016224          120 GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC---  196 (393)
Q Consensus       120 ~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~---  196 (393)
                      ..++.|+-.+.+.--|..+| ++..+-. -...|.+-+.- -+++++.|...|.+.+.+..+|+....+...+.+.+   
T Consensus        24 T~v~igSHs~~~~avd~~sG-~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~  100 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSG-NLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ  100 (354)
T ss_pred             eEEEEecCCceEEEecCCCC-cEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence            45667888998888898888 4433211 12233332222 467899999999999999999988888877666543   


Q ss_pred             EEeCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcE-EEEEEeC--CEEEEEeCCCcEEEEEecc
Q 016224          197 MISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQV-YAMAVGN--DLLFAGTQDGAILAWKFNV  258 (393)
Q Consensus       197 ~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v-~~l~~~~--~~l~~~~~dg~I~vwd~~~  258 (393)
                      +..++.++.++ .|+..+..|.++...+-.....+.+ .+-+..+  ..|+++...|.|.--..+.
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~  166 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP  166 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence            34678888876 7889999999988776333222222 2223333  3666666667665544433

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.96  E-value=0.035  Score=56.39  Aligned_cols=81  Identities=20%  Similarity=0.210  Sum_probs=61.7

Q ss_pred             ceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 016224          111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL  190 (393)
Q Consensus       111 ~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~  190 (393)
                      .+...+....-++.|+..|.+-..|+.........-..-..+|++++|+.+|.+++.|-.+|.|.+||+..++..+.+..
T Consensus        91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e  170 (1206)
T KOG2079|consen   91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE  170 (1206)
T ss_pred             ceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence            33444444445678999999998887764333333333468999999999999999999999999999999988887764


Q ss_pred             C
Q 016224          191 G  191 (393)
Q Consensus       191 ~  191 (393)
                      .
T Consensus       171 ~  171 (1206)
T KOG2079|consen  171 H  171 (1206)
T ss_pred             c
Confidence            4

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.002  Score=57.93  Aligned_cols=82  Identities=15%  Similarity=0.139  Sum_probs=68.3

Q ss_pred             cCceeecCceeeEEEEEEcC---CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc---CCEEEEEeCCCcEEE
Q 016224          264 EPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKV  337 (393)
Q Consensus       264 ~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~i  337 (393)
                      +....+..+...|..+++++   .++..++.+.+|+|.|+++...+.++..+ ..+++++|+   ..+|..|-..|.|.|
T Consensus       184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV  262 (463)
T ss_pred             chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence            33445667778888888863   36889999999999999999999999888 789999998   458999999999999


Q ss_pred             EEcCCCcce
Q 016224          338 WFATDSGNL  346 (393)
Q Consensus       338 wd~~~~~~~  346 (393)
                      ||++..+..
T Consensus       263 yD~R~~~~~  271 (463)
T KOG1645|consen  263 YDMRQPEGP  271 (463)
T ss_pred             EEccCCCch
Confidence            999876543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.86  E-value=0.13  Score=52.37  Aligned_cols=101  Identities=19%  Similarity=0.136  Sum_probs=65.8

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEE-----------E-----------------EeCCCEEEEEcCCeEE
Q 016224          162 SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC-----------M-----------------ISEGPWIFIGVTNFVK  213 (393)
Q Consensus       162 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~-----------~-----------------~~~~~~l~~~~~~~i~  213 (393)
                      +..|+.++.++.|.-.|..+|+.+..+........           .                 ...+++++...|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            56788888889999999999998888765433210           0                 0122444555888999


Q ss_pred             EEECCCCceeeecCCCCcEE-----------------EEEEeCCEEEEEeC----------CCcEEEEEeccCCcc
Q 016224          214 AWNTQTNTDLSLSGPVGQVY-----------------AMAVGNDLLFAGTQ----------DGAILAWKFNVTTNC  262 (393)
Q Consensus       214 v~d~~~~~~~~~~~~~~~v~-----------------~l~~~~~~l~~~~~----------dg~I~vwd~~~~~~~  262 (393)
                      -.|.++++..-..+..+.|.                 .-.+..+.+++|+.          +|.|+-+|.++++..
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~  349 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV  349 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence            99999998873323222221                 11223446777643          688999999998644

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.83  E-value=0.0079  Score=60.81  Aligned_cols=114  Identities=18%  Similarity=0.175  Sum_probs=79.3

Q ss_pred             cCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCc-ceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcce
Q 016224          270 KGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETL-QCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNL  346 (393)
Q Consensus       270 ~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~  346 (393)
                      ......+.+.+.-...++.|+..|.+-..|.... .+...=..-.++|++++|+  |..++.|-.+|.|.+||+...+.+
T Consensus        86 e~~~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l  165 (1206)
T KOG2079|consen   86 EDIAAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKIL  165 (1206)
T ss_pred             cCCCcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcce
Confidence            3344556666666778999999999999998752 2222223346789999998  778999999999999999988877


Q ss_pred             EEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          347 EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       347 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      ..+..+...  ...+.++-...++..++++..-|.  +|++
T Consensus       166 ~~i~e~~ap--~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  166 KVITEHGAP--VTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eeeeecCCc--cceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            777765544  333333332333337888888886  5654

>smart00320 WD40 WD40 repeats

Probab=96.79  E-value=0.0038  Score=35.81  Aligned_cols=37  Identities=38%  Similarity=0.449  Sum_probs=27.5

Q ss_pred             cceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEE
Q 016224          303 LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWF  339 (393)
Q Consensus       303 ~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd  339 (393)
                      ++++..+..|...+.++.+.  +.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34556666777788888887  45788888888888885

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.75  E-value=0.65  Score=45.60  Aligned_cols=102  Identities=9%  Similarity=-0.035  Sum_probs=61.0

Q ss_pred             cCCEEEEecCCCcEEEeeCCC-----cceeeEeccCccceEEEEE--cCCEEEEE-eCCCcEEEEEcCCCcceE------
Q 016224          282 GANKLYSGSMDNSIRVWNLET-----LQCIQTLTEHTSVVMSLLC--WDQFLLSC-SLDKTIKVWFATDSGNLE------  347 (393)
Q Consensus       282 ~~~~l~sg~~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~l~~--~~~~l~s~-s~dg~i~iwd~~~~~~~~------  347 (393)
                      ++++...  .++.|.+.|.++     .+.+..+.... ....+.+  ++++++++ ..+.+|.|+|+.+.+...      
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~  363 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPK-NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP  363 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEEEEECCC-CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence            4555444  367899999998     45555554322 2334444  47776554 558999999998754310      


Q ss_pred             ---EEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          348 ---VTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       348 ---~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                         ..........-+...|.++   +....|---|..|..|++..
T Consensus       364 ~~~vvaevevGlGPLHTaFDg~---G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        364 RDAVVAEPELGLGPLHTAFDGR---GNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             cceEEEeeccCCCcceEEECCC---CCEEEeEeecceeEEEehHH
Confidence               1111111223344555433   23677778899999999875

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.011  Score=56.40  Aligned_cols=75  Identities=17%  Similarity=0.124  Sum_probs=64.8

Q ss_pred             ceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEE-EEEecCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 016224          111 DILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVS-GITLPSGSDKLYSGSKDETVRVWDCASGQCAGV  187 (393)
Q Consensus       111 ~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~-~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~  187 (393)
                      .+.-+.|+|.  -++++..+|.|.+..+.  ++.+.++.-|...++ +++|.|||+.||.|-.||+|++-|++++..+..
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            5667788876  45578899999998887  488888887888888 999999999999999999999999999987766

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.70  E-value=0.45  Score=43.04  Aligned_cols=192  Identities=12%  Similarity=0.051  Sum_probs=108.4

Q ss_pred             ecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--------ceEE
Q 016224          125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG--------EVGC  196 (393)
Q Consensus       125 g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--------~~~~  196 (393)
                      --..+.|+-|+..++....  +. +.+.+.++..-..+..|+++..  -+.+++.+++..+..+....        .-..
T Consensus        43 DI~~~~i~r~~~~~g~~~~--~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~  117 (307)
T COG3386          43 DILGGRIHRLDPETGKKRV--FP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGV  117 (307)
T ss_pred             eCCCCeEEEecCCcCceEE--EE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCcee
Confidence            4456678888877662322  22 2333455554444555665543  46677776665533332111        1233


Q ss_pred             EEeCCCEEEEEcC------------CeEEEEECCCCcee-eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCC
Q 016224          197 MISEGPWIFIGVT------------NFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTT  260 (393)
Q Consensus       197 ~~~~~~~l~~~~~------------~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~  260 (393)
                      +.++|.+.+....            +.|+.++. .+... ....+-..-+.|+|+|+   ++++=+..+.|..|++....
T Consensus       118 v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~  196 (307)
T COG3386         118 VDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPAT  196 (307)
T ss_pred             EcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCccc
Confidence            4466777766433            23444454 34444 44455677789999998   45555556888888876311


Q ss_pred             c-cccC--ceeecCceeeE--EEEEEcCCEEEEecCCC-cEEEeeCCCcceeeEeccCccceEEEEEcC
Q 016224          261 N-CFEP--AASLKGHSLAV--VSLVVGANKLYSGSMDN-SIRVWNLETLQCIQTLTEHTSVVMSLLCWD  323 (393)
Q Consensus       261 ~-~~~~--~~~~~~~~~~v--~~l~~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~  323 (393)
                      . ....  ...+....+..  .++.-++++.+++..+| .|.+|+.. ++++..+......+++++|-+
T Consensus       197 g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         197 GPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             CccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence            1 0011  11111122222  23334456554554444 99999998 999999988778888888875

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.59  E-value=0.44  Score=41.58  Aligned_cols=185  Identities=10%  Similarity=0.050  Sum_probs=114.5

Q ss_pred             EEEEEecC-CcCCEEEEEecCCCCEEEEEeCCC--cEEEEECCCCeEEEEEecCCce---EEEEeCCCEEEEE-cCCeEE
Q 016224          141 KLLTQLEG-HQKVVSGITLPSGSDKLYSGSKDE--TVRVWDCASGQCAGVINLGGEV---GCMISEGPWIFIG-VTNFVK  213 (393)
Q Consensus       141 ~~~~~l~~-h~~~I~~i~~s~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~-~~~~i~  213 (393)
                      +.+.++.. ...-...+.|..++.++-+.+.-|  .|+.+|+.+++.......+...   ....-++++.... .++...
T Consensus        34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f  113 (264)
T PF05096_consen   34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGF  113 (264)
T ss_dssp             EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEE
T ss_pred             EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEE
Confidence            45555542 234456788877788888887766  8999999999998888877653   1122344554455 678999


Q ss_pred             EEECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecC--cee---eEEEEEEcCCE-EE
Q 016224          214 AWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKG--HSL---AVVSLVVGANK-LY  287 (393)
Q Consensus       214 v~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~--~~~---~v~~l~~~~~~-l~  287 (393)
                      +||..+-+.+.......+=..++...+.|+.......|+++|..+-.    ....+..  ...   .+..+.+-+.. .|
T Consensus       114 ~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~----~~~~i~V~~~g~pv~~LNELE~i~G~IyA  189 (264)
T PF05096_consen  114 VYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFK----EVRTIQVTDNGRPVSNLNELEYINGKIYA  189 (264)
T ss_dssp             EEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-S----EEEEEE-EETTEE---EEEEEEETTEEEE
T ss_pred             EEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccc----eEEEEEEEECCEECCCcEeEEEEcCEEEE
Confidence            99999988775555566778888777788888778889999876542    2222221  122   33445554444 44


Q ss_pred             EecCCCcEEEeeCCCcceeeEecc------------C---ccceEEEEEc---CCEEEEE
Q 016224          288 SGSMDNSIRVWNLETLQCIQTLTE------------H---TSVVMSLLCW---DQFLLSC  329 (393)
Q Consensus       288 sg~~dg~i~iwd~~~~~~~~~~~~------------~---~~~v~~l~~~---~~~l~s~  329 (393)
                      =.-....|...|..+|+.+..+..            +   ....+.|+++   +.+++||
T Consensus       190 NVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  190 NVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            444567788899999998776631            1   2346889997   3455555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.58  E-value=0.38  Score=40.75  Aligned_cols=195  Identities=11%  Similarity=0.125  Sum_probs=105.4

Q ss_pred             CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCC---CEEEEEeCCCcEEEEECCC--CeEEEEEe-cCC-------c
Q 016224          127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGS---DKLYSGSKDETVRVWDCAS--GQCAGVIN-LGG-------E  193 (393)
Q Consensus       127 ~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~---~~l~s~s~dg~v~iwd~~~--~~~~~~~~-~~~-------~  193 (393)
                      ..+.|+-||..+..-...++.+..  +.++.+...+   .+.+.++..-.|--||-..  -...+++. ...       .
T Consensus        35 ~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~N  112 (310)
T KOG4499|consen   35 EAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLN  112 (310)
T ss_pred             ccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHhcccc
Confidence            345667799887633334444332  4445553333   3444444444455566332  23333321 110       1


Q ss_pred             eEEEEeCCCEEEEEc----------CCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEec--c
Q 016224          194 VGCMISEGPWIFIGV----------TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFN--V  258 (393)
Q Consensus       194 ~~~~~~~~~~l~~~~----------~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~--~  258 (393)
                      -.-+.++|++.....          .+.++.|-....-. .......--+.++|+.+   +.++-+.+-+|..||..  +
T Consensus       113 DgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~-~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~t  191 (310)
T KOG4499|consen  113 DGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVE-LIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPT  191 (310)
T ss_pred             cCccCCCCceeeeeeccccccccccccEEEEeccCCCce-eeehhccCCccccccccCcEEEEEccCceEEeeeecCCCc
Confidence            122345677743321          12344443322111 12222233356777766   66677778888778843  3


Q ss_pred             CCcc-ccCceeec------CceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCC
Q 016224          259 TTNC-FEPAASLK------GHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ  324 (393)
Q Consensus       259 ~~~~-~~~~~~~~------~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~  324 (393)
                      +... .+.+..++      .....-+++.-+|++.++.-..++|...|..+|+.+.+++-....|++++|-|.
T Consensus       192 G~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  192 GDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             ccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence            3211 01111111      111122445556888888889999999999999999999999999999999864

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.55  E-value=0.082  Score=53.44  Aligned_cols=138  Identities=11%  Similarity=0.103  Sum_probs=91.4

Q ss_pred             CCCEEEEE--cCCeEEEEECCCCcee-eecCCC-CcEEEEEEe-------CCEEEEEeCCCcEEEEEeccCCccccCce-
Q 016224          200 EGPWIFIG--VTNFVKAWNTQTNTDL-SLSGPV-GQVYAMAVG-------NDLLFAGTQDGAILAWKFNVTTNCFEPAA-  267 (393)
Q Consensus       200 ~~~~l~~~--~~~~i~v~d~~~~~~~-~~~~~~-~~v~~l~~~-------~~~l~~~~~dg~I~vwd~~~~~~~~~~~~-  267 (393)
                      +..+|+..  ..+.|+-.|++.++++ ....+. .+|..++..       +...+.|-.+..+..||.+....  +++. 
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~--k~v~~  569 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN--KLVDS  569 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC--ceeec
Confidence            44555554  3568999999999988 333333 236666543       23677888899999999997542  1111 


Q ss_pred             ee--cCceeeEEEEEEc-CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEc
Q 016224          268 SL--KGHSLAVVSLVVG-ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFA  340 (393)
Q Consensus       268 ~~--~~~~~~v~~l~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~  340 (393)
                      ..  -.......|++-. ..+||+|+.+|.||+||--..+....|.+-..+|..|..+  |++|++.+ +..|.+++.
T Consensus       570 ~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  570 QSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             cccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            11  1223445677766 4599999999999999954333344456667899888877  77766554 557777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.54  E-value=0.49  Score=41.51  Aligned_cols=271  Identities=9%  Similarity=0.054  Sum_probs=158.6

Q ss_pred             ecceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCc-CCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe---E
Q 016224          109 KTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ---C  184 (393)
Q Consensus       109 ~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~-~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~---~  184 (393)
                      ..-+..+.++.+..+.+..+.-++|.|+.+..++...-.-.. +--.++..  .|++...+..|.-+.+.|+.+.+   .
T Consensus        86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~l  163 (370)
T COG5276          86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQL  163 (370)
T ss_pred             hhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCcee
Confidence            335556677788888888888999999986633332222222 23333333  58899999977778888887653   3


Q ss_pred             EEEEecCCc-eEEEEeCCCEEEEE-cCCeEEEEECCCCceeeecCC---CCcEEEEEEeCCEEEEEeCCCcEEEEEeccC
Q 016224          185 AGVINLGGE-VGCMISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGP---VGQVYAMAVGNDLLFAGTQDGAILAWKFNVT  259 (393)
Q Consensus       185 ~~~~~~~~~-~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~---~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~  259 (393)
                      ...+..... ...+.-.|+...++ .++-+.+-|+.......+.++   ...+.++..++++....-.+--+.+-|....
T Consensus       164 agrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~  243 (370)
T COG5276         164 AGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGP  243 (370)
T ss_pred             eeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEEecCCC
Confidence            333333322 12334455555555 888899999887665544433   3378888889985444445555777777665


Q ss_pred             CccccCceeec-CceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcc---eeeEeccCccceEEEEEcCCEEEEEeCCCcE
Q 016224          260 TNCFEPAASLK-GHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQ---CIQTLTEHTSVVMSLLCWDQFLLSCSLDKTI  335 (393)
Q Consensus       260 ~~~~~~~~~~~-~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i  335 (393)
                      +.. ......+ .....+..+...+++.+....+.-+.+.|+.+..   ....+......-..+...+.++..+..+ +.
T Consensus       244 ssp-~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay~~y~yiadkn-~g  321 (370)
T COG5276         244 SSP-TVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAYGNYNYIADKN-TG  321 (370)
T ss_pred             CCc-eEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEecCeeEeccCC-ce
Confidence            321 1111111 1223344567788888888888888888887532   2223333333456677777777777666 55


Q ss_pred             EEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          336 KVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       336 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      .+-+....+.+.........  +.+...+-+.+   ++.+...++-+.||+.-
T Consensus       322 ~vV~~s~~s~m~~~~g~~ti--~~s~~v~~~~q---~~y~~d~~~gl~i~~~~  369 (370)
T COG5276         322 AVVDASPPSMMDKRPGRPTI--GQSCDVSVDTQ---IIYSTDYNGGLSIIEYL  369 (370)
T ss_pred             EEEeCCChhhcccccCcceE--eeecceEEEee---EEEEeecCCCEEEEEec
Confidence            55665443332222211111  11111111222   78888889999999863

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.48  E-value=0.011  Score=36.59  Aligned_cols=34  Identities=24%  Similarity=0.179  Sum_probs=30.2

Q ss_pred             cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 016224          150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC  184 (393)
Q Consensus       150 ~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~  184 (393)
                      ...|..++|+|..++||.+..+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            457999999999999999999999999998 5543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.48  E-value=0.82  Score=43.37  Aligned_cols=49  Identities=14%  Similarity=0.203  Sum_probs=37.4

Q ss_pred             eEEEEECCCCceeeecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccC
Q 016224          211 FVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVT  259 (393)
Q Consensus       211 ~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~  259 (393)
                      .|.+|+........+.-..+.+.++.|..+ .|++...||.+++||+...
T Consensus        62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~  111 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGE  111 (410)
T ss_pred             EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCc
Confidence            477777776655443333389999999877 8888899999999998643

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.47  E-value=0.55  Score=41.25  Aligned_cols=163  Identities=12%  Similarity=0.114  Sum_probs=106.6

Q ss_pred             EEEEEecCCceEEEEeCCCEEEEE-cCCeEEEEECCCCceeeec---CCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccC
Q 016224          184 CAGVINLGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDLSLS---GPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVT  259 (393)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~---~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~  259 (393)
                      .+..+.....+..+.-.++++... .+.-+++.|+.+....++.   ...+--.++..+.++..++..|.-..+.|+...
T Consensus        79 l~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdp  158 (370)
T COG5276          79 LLSVINARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDP  158 (370)
T ss_pred             eEEEEehhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCC
Confidence            334444444444444455666655 6778999999887655333   233567788889998888887777889999876


Q ss_pred             CccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcce---eeEeccCccceEEEEEcCCEEEEEeCCCcEE
Q 016224          260 TNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQC---IQTLTEHTSVVMSLLCWDQFLLSCSLDKTIK  336 (393)
Q Consensus       260 ~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~  336 (393)
                      +.. .+..........-..++.+|++-+.+..|+-+.+-|+.....   +.... -...+.++..++++....-.+.-+.
T Consensus       159 ssP-~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~egvl  236 (370)
T COG5276         159 SSP-QLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYDEGVL  236 (370)
T ss_pred             CCc-eeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEcccceE
Confidence            532 223333333444467788999999999999999999976432   22222 2226788888877766666666777


Q ss_pred             EEEcCCCcceEE
Q 016224          337 VWFATDSGNLEV  348 (393)
Q Consensus       337 iwd~~~~~~~~~  348 (393)
                      +-|.........
T Consensus       237 ivd~s~~ssp~~  248 (370)
T COG5276         237 IVDVSGPSSPTV  248 (370)
T ss_pred             EEecCCCCCceE
Confidence            777766554433

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.38  E-value=0.4  Score=48.70  Aligned_cols=131  Identities=14%  Similarity=0.148  Sum_probs=89.3

Q ss_pred             cCCCeEEEEECCCCcEEEEEecCCcCC-EEEEEecC-----CCCEEEEEeCCCcEEEEECCCCe--EEE----EEecCCc
Q 016224          126 EKCKFLHSWTVGDGFKLLTQLEGHQKV-VSGITLPS-----GSDKLYSGSKDETVRVWDCASGQ--CAG----VINLGGE  193 (393)
Q Consensus       126 ~~dg~i~vwd~~~~~~~~~~l~~h~~~-I~~i~~s~-----~~~~l~s~s~dg~v~iwd~~~~~--~~~----~~~~~~~  193 (393)
                      .....|+-.|++.| +.+.++..|... |..++=..     .....+.|-.+..+..||.+-..  ++.    .+.....
T Consensus       501 ~~~~~ly~mDLe~G-KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~  579 (794)
T PF08553_consen  501 NNPNKLYKMDLERG-KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN  579 (794)
T ss_pred             CCCCceEEEecCCC-cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence            35678999999999 999999988755 66654321     23456677788899999987532  322    2223344


Q ss_pred             eEEEE--eCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEec
Q 016224          194 VGCMI--SEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFN  257 (393)
Q Consensus       194 ~~~~~--~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~  257 (393)
                      ..++.  .+|.+++++.+|.|++||-...+.. .+.+...+|..|..+.| ..+.++.+..|.+++..
T Consensus       580 Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  580 FSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL  647 (794)
T ss_pred             ceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence            45554  3555666668999999995443322 45567899999999988 55555567778888763

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PHA02790 Kelch-like protein; Provisional

Probab=96.18  E-value=0.54  Score=45.68  Aligned_cols=176  Identities=12%  Similarity=0.092  Sum_probs=89.2

Q ss_pred             CCCEEEEEeCCC-----cEEEEECCCCeEEEEEecCCc---eEEEEeCCCEEEEEc-C--CeEEEEECCCCceeeecC--
Q 016224          161 GSDKLYSGSKDE-----TVRVWDCASGQCAGVINLGGE---VGCMISEGPWIFIGV-T--NFVKAWNTQTNTDLSLSG--  227 (393)
Q Consensus       161 ~~~~l~s~s~dg-----~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~-~--~~i~v~d~~~~~~~~~~~--  227 (393)
                      ++.+++.|+.++     ++..||..+++-...-....+   ......++.+.++|. +  ..+..||..+++-.....  
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~  350 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL  350 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence            345556676542     567788877654333222211   222334666666653 2  468889987765443222  


Q ss_pred             -CCCcEEEEEEeCCEEEEEeCCC---cEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCc
Q 016224          228 -PVGQVYAMAVGNDLLFAGTQDG---AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETL  303 (393)
Q Consensus       228 -~~~~v~~l~~~~~~l~~~~~dg---~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~  303 (393)
                       .............+.+.|+.++   .+..||..+..  +.....+............++...+.|+   .+.+||.++.
T Consensus       351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~--W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~  425 (480)
T PHA02790        351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ--WQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESSN  425 (480)
T ss_pred             CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE--EEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCCC
Confidence             1222233344444667776553   46678776542  2222222212222233445555556663   5778998765


Q ss_pred             ce--eeEeccCccceEEEEEcCCEEEEEeCC-----CcEEEEEcC
Q 016224          304 QC--IQTLTEHTSVVMSLLCWDQFLLSCSLD-----KTIKVWFAT  341 (393)
Q Consensus       304 ~~--~~~~~~~~~~v~~l~~~~~~l~s~s~d-----g~i~iwd~~  341 (393)
                      +-  +..+.........+...++..+.|+.+     ..+..||..
T Consensus       426 ~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~  470 (480)
T PHA02790        426 TWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNR  470 (480)
T ss_pred             cEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECC
Confidence            43  222322223334445557777777754     235555554

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=96.13  E-value=1.2  Score=41.67  Aligned_cols=195  Identities=19%  Similarity=0.232  Sum_probs=111.7

Q ss_pred             eeEecCcEEEecCCCeEEEEECCCCcEEEEEecCC--cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC
Q 016224          115 RNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGH--QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG  192 (393)
Q Consensus       115 ~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h--~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~  192 (393)
                      .....+.++.+..+|.|.-.|.+++ +.+-....-  ...+..=.+..+|+ |+.++.++.+...|..+|+.+.......
T Consensus        64 ~~~~dg~v~~~~~~G~i~A~d~~~g-~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~  141 (370)
T COG1520          64 PADGDGTVYVGTRDGNIFALNPDTG-LVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG  141 (370)
T ss_pred             cEeeCCeEEEecCCCcEEEEeCCCC-cEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC
Confidence            3455667777889999998998888 433221111  11222222223555 8888899999999998999998888777


Q ss_pred             c---eEEEEeCCCEEEEE-cCCeEEEEECCCCcee-eecCC---CCcEE-EEEEeCCEEEEEeC--CCcEEEEEeccCCc
Q 016224          193 E---VGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGP---VGQVY-AMAVGNDLLFAGTQ--DGAILAWKFNVTTN  261 (393)
Q Consensus       193 ~---~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~---~~~v~-~l~~~~~~l~~~~~--dg~I~vwd~~~~~~  261 (393)
                      .   ..........+... .++.+...+..+++.. .....   ...+. ......+.++.+..  ++.+.-.|...+..
T Consensus       142 ~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~  221 (370)
T COG1520         142 SPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTL  221 (370)
T ss_pred             CeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcE
Confidence            1   11122233344444 6788888888877765 21111   11111 11133346666665  66677777766654


Q ss_pred             cccCceeec-Ccee-------eEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccC
Q 016224          262 CFEPAASLK-GHSL-------AVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEH  312 (393)
Q Consensus       262 ~~~~~~~~~-~~~~-------~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  312 (393)
                      .+....... +...       ....+.. +..++.++.++.+...|..+++.+..+...
T Consensus       222 ~w~~~~~~~~~~~~~~~~~~~~~~~v~v-~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         222 KWSQKVSQTIGRTAISTTPAVDGGPVYV-DGGVYAGSYGGKLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             eeeeeeecccCcccccccccccCceEEE-CCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence            333111111 1110       0011111 233467778888999999999999888764

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.96  E-value=1.6  Score=41.57  Aligned_cols=238  Identities=13%  Similarity=0.128  Sum_probs=122.8

Q ss_pred             CEEEEEecCCCCEEEEE-eCCC----cEEEEECCCCeEEEEE-ecCCce-EEEEeCCCEEEE-Ec-----------CCeE
Q 016224          152 VVSGITLPSGSDKLYSG-SKDE----TVRVWDCASGQCAGVI-NLGGEV-GCMISEGPWIFI-GV-----------TNFV  212 (393)
Q Consensus       152 ~I~~i~~s~~~~~l~s~-s~dg----~v~iwd~~~~~~~~~~-~~~~~~-~~~~~~~~~l~~-~~-----------~~~i  212 (393)
                      .+....++|++++||-+ +..|    +|+++|+++++.+... ...... ..+..++..++. ..           ...|
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            34467889999988865 4444    5999999999876533 222222 455567666554 32           2247


Q ss_pred             EEEECCCCce---eeecCCCCc--EEEEEEeCC---EEEEEeCC---CcEEEEEeccCC-ccccCceeecCceeeEEEEE
Q 016224          213 KAWNTQTNTD---LSLSGPVGQ--VYAMAVGND---LLFAGTQD---GAILAWKFNVTT-NCFEPAASLKGHSLAVVSLV  280 (393)
Q Consensus       213 ~v~d~~~~~~---~~~~~~~~~--v~~l~~~~~---~l~~~~~d---g~I~vwd~~~~~-~~~~~~~~~~~~~~~v~~l~  280 (393)
                      ..|.+.+...   +.+......  ...+..+++   +++.....   ..+.+.++.... ....+.............+.
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            8888877643   233333322  567777777   33333333   347777776641 00111111222222333344


Q ss_pred             EcCCEEEEec----CCCcEEEeeCCCcce---eeEeccCcc--ceEEEEEcCCEEEE-EeCCC--cEEEEEcCCCcceEE
Q 016224          281 VGANKLYSGS----MDNSIRVWNLETLQC---IQTLTEHTS--VVMSLLCWDQFLLS-CSLDK--TIKVWFATDSGNLEV  348 (393)
Q Consensus       281 ~~~~~l~sg~----~dg~i~iwd~~~~~~---~~~~~~~~~--~v~~l~~~~~~l~s-~s~dg--~i~iwd~~~~~~~~~  348 (393)
                      ..++.|+.-+    ..+.|...++.+...   ...+..+..  .+..+...+++|+. -..++  .|+++++..+.....
T Consensus       285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~  364 (414)
T PF02897_consen  285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESRE  364 (414)
T ss_dssp             EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEE
T ss_pred             ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEee
Confidence            4455433322    346777778877653   224444544  56777776665554 44444  488888872333333


Q ss_pred             EEeecCCccEEEEEeeeCCCCCcEEEEEeC---CCeEEEEeCCceee
Q 016224          349 TYTHNEEHGVLALCGMPDSEGKPVLLCSCN---DNSVRFYDLPSVII  392 (393)
Q Consensus       349 ~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~---dg~I~iwd~~s~~l  392 (393)
                      +.. .....+..+...+.  ...+.++-++   -++|..||+.++++
T Consensus       365 ~~~-p~~g~v~~~~~~~~--~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  365 IPL-PEAGSVSGVSGDFD--SDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EES-SSSSEEEEEES-TT---SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             ecC-CcceEEeccCCCCC--CCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            222 22333444443333  3334444433   36788889888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PHA03098 kelch-like protein; Provisional

Probab=95.92  E-value=0.72  Score=45.55  Aligned_cols=180  Identities=13%  Similarity=0.150  Sum_probs=88.5

Q ss_pred             CCCEEEEEeCCC------cEEEEECCCCeEEEEEecC---CceEEEEeCCCEEEEE-cC-----CeEEEEECCCCceeee
Q 016224          161 GSDKLYSGSKDE------TVRVWDCASGQCAGVINLG---GEVGCMISEGPWIFIG-VT-----NFVKAWNTQTNTDLSL  225 (393)
Q Consensus       161 ~~~~l~s~s~dg------~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~-~~-----~~i~v~d~~~~~~~~~  225 (393)
                      ++..++.|+.++      .+..||..+.+-...-...   ........++.+.+.| .+     ..+..||..+++-...
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~  373 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE  373 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence            455666666542      5778888776543322222   1122333456666555 22     3577889887764422


Q ss_pred             cC---CCCcEEEEEEeCCEEEEEeCC------CcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCC----
Q 016224          226 SG---PVGQVYAMAVGNDLLFAGTQD------GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD----  292 (393)
Q Consensus       226 ~~---~~~~v~~l~~~~~~l~~~~~d------g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d----  292 (393)
                      ..   .............+++.|+.+      ..+..||+.+..  +.....+........++..++..++.|+.+    
T Consensus       374 ~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~  451 (534)
T PHA03098        374 PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK--WSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN  451 (534)
T ss_pred             CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCe--eeecCCCCccccCceEEEECCEEEEECCccCCCC
Confidence            21   111222223333366666632      357788876542  222222221111222344556566666643    


Q ss_pred             ----CcEEEeeCCCccee--eEeccCccceEEEEEcCCEEEEEeCC-----CcEEEEEcCC
Q 016224          293 ----NSIRVWNLETLQCI--QTLTEHTSVVMSLLCWDQFLLSCSLD-----KTIKVWFATD  342 (393)
Q Consensus       293 ----g~i~iwd~~~~~~~--~~~~~~~~~v~~l~~~~~~l~s~s~d-----g~i~iwd~~~  342 (393)
                          ..+.+||..+.+-.  ..+.........+...+..++.|+.+     ..|.+||..+
T Consensus       452 ~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        452 IKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             CcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCC
Confidence                23888998875432  22221112222333456666666654     3577777654

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.83  E-value=0.39  Score=37.05  Aligned_cols=103  Identities=15%  Similarity=0.192  Sum_probs=74.2

Q ss_pred             EEecCCCCEEEEEeCCCcEEEEECCC--------CeEEEEEecCCceEEEEe-------CCCEEEEEcCCeEEEEECCCC
Q 016224          156 ITLPSGSDKLYSGSKDETVRVWDCAS--------GQCAGVINLGGEVGCMIS-------EGPWIFIGVTNFVKAWNTQTN  220 (393)
Q Consensus       156 i~~s~~~~~l~s~s~dg~v~iwd~~~--------~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~i~v~d~~~~  220 (393)
                      -.|......|+.++.-|+|.|++...        ...+..+.....+.++..       ....|+.|....+..||+..+
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N   83 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENN   83 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccC
Confidence            34655666788888889999998763        345677778877777642       467899999999999999999


Q ss_pred             ceeeecCCCCcEEEEEEe-----CCEEEEEeCCCcEEEEEecc
Q 016224          221 TDLSLSGPVGQVYAMAVG-----NDLLFAGTQDGAILAWKFNV  258 (393)
Q Consensus       221 ~~~~~~~~~~~v~~l~~~-----~~~l~~~~~dg~I~vwd~~~  258 (393)
                      ..+......+.|.++.+.     +.-|+..+.+-.|.-||...
T Consensus        84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G  126 (136)
T PF14781_consen   84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG  126 (136)
T ss_pred             chhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence            988777777888888773     22344444455565555443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.81  E-value=1.8  Score=41.12  Aligned_cols=181  Identities=14%  Similarity=0.151  Sum_probs=93.6

Q ss_pred             eEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce------EE-----EE
Q 016224          130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV------GC-----MI  198 (393)
Q Consensus       130 ~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~------~~-----~~  198 (393)
                      .|+||+...  +++..+.--.+.|.++.|+.+ ..|+....||.++++|+. |+.  .+..+..+      .+     ..
T Consensus        62 ~I~iys~sG--~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~  135 (410)
T PF04841_consen   62 SIQIYSSSG--KLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWF  135 (410)
T ss_pred             EEEEECCCC--CEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC-Cce--eechhhhccccCccccccccccc
Confidence            599998654  455555444489999999875 456677799999999986 333  33322211      11     11


Q ss_pred             eCCCEEEEEcCCeEEEEE-CCCCcee-eecCCC---------CcEEE-EEEeCC--EEEEEeCCCcEEEEEeccCCcccc
Q 016224          199 SEGPWIFIGVTNFVKAWN-TQTNTDL-SLSGPV---------GQVYA-MAVGND--LLFAGTQDGAILAWKFNVTTNCFE  264 (393)
Q Consensus       199 ~~~~~l~~~~~~~i~v~d-~~~~~~~-~~~~~~---------~~v~~-l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~  264 (393)
                      .+..+++...++.+.+.+ ....... .+....         ..... ..++.+  ..+....++.+.+.+-....    
T Consensus       136 ~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~----  211 (410)
T PF04841_consen  136 YKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK----  211 (410)
T ss_pred             CCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc----
Confidence            223344444444443332 2211110 110000         00000 112222  34444455556544322210    


Q ss_pred             CceeecCceeeEEEEEE--cCCEEEEecCCCcEEEeeCCCcceeeEeccC-ccceEEEEEcCC
Q 016224          265 PAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLTEH-TSVVMSLLCWDQ  324 (393)
Q Consensus       265 ~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~  324 (393)
                         .+. ...++..++.  +++++|.-..+|.+.+.+..-.+.+..+... ......+.|.|+
T Consensus       212 ---~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~  270 (410)
T PF04841_consen  212 ---QID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN  270 (410)
T ss_pred             ---ccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence               011 1235655555  5678888888999999887666666666544 334456666654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PHA03098 kelch-like protein; Provisional

Probab=95.78  E-value=1  Score=44.52  Aligned_cols=173  Identities=12%  Similarity=0.116  Sum_probs=82.6

Q ss_pred             eEEEEECCCCceeeecC---CCCcEEEEEEeCCEEEEEeCC-----CcEEEEEeccCCccccCceeecCceeeEEEEEEc
Q 016224          211 FVKAWNTQTNTDLSLSG---PVGQVYAMAVGNDLLFAGTQD-----GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG  282 (393)
Q Consensus       211 ~i~v~d~~~~~~~~~~~---~~~~v~~l~~~~~~l~~~~~d-----g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~  282 (393)
                      .+..||..+++...+..   .......+.+...+++.|+.+     ..+..||..+..  +.....+............+
T Consensus       312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~lp~~r~~~~~~~~~  389 (534)
T PHA03098        312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESK--WREEPPLIFPRYNPCVVNVN  389 (534)
T ss_pred             cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCc--eeeCCCcCcCCccceEEEEC
Confidence            56788888776553322   222233333444477777765     346677766542  22222222111122223445


Q ss_pred             CCEEEEecCC------CcEEEeeCCCccee--eEeccCccceEEEEEcCCEEEEEeCC--------CcEEEEEcCCCcce
Q 016224          283 ANKLYSGSMD------NSIRVWNLETLQCI--QTLTEHTSVVMSLLCWDQFLLSCSLD--------KTIKVWFATDSGNL  346 (393)
Q Consensus       283 ~~~l~sg~~d------g~i~iwd~~~~~~~--~~~~~~~~~v~~l~~~~~~l~s~s~d--------g~i~iwd~~~~~~~  346 (393)
                      +..++.|+.+      ..+..||+.+.+-.  ..+.........+...+..++.|+.+        ..+.+||..+.+ .
T Consensus       390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-W  468 (534)
T PHA03098        390 NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK-W  468 (534)
T ss_pred             CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCc-e
Confidence            6666667632      45888998764432  22211111222333445566666543        237888886543 2


Q ss_pred             EEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC-----CeEEEEeCCce
Q 016224          347 EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND-----NSVRFYDLPSV  390 (393)
Q Consensus       347 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d-----g~I~iwd~~s~  390 (393)
                      ..+...........++. .   ++.+++.|+.+     ..|.+||..+.
T Consensus       469 ~~~~~~~~~r~~~~~~~-~---~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        469 TELSSLNFPRINASLCI-F---NNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             eeCCCCCcccccceEEE-E---CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            22211111101111111 1   23366667654     47888887764

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.78  E-value=0.22  Score=47.04  Aligned_cols=139  Identities=9%  Similarity=0.101  Sum_probs=88.0

Q ss_pred             CCCEEEEE--cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---------EEEEEeCCCcEEEEEeccCCccccCcee
Q 016224          200 EGPWIFIG--VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---------LLFAGTQDGAILAWKFNVTTNCFEPAAS  268 (393)
Q Consensus       200 ~~~~l~~~--~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---------~l~~~~~dg~I~vwd~~~~~~~~~~~~~  268 (393)
                      +..+|+..  ....++-.|++.++.+..-.....|.-+.+.|+         .-++|-.+..|.-||.+-....  .+..
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--kl~~  421 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--KLAV  421 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcc--eeee
Confidence            44455543  445888889999998844443344666666665         3456778899999999865431  1111


Q ss_pred             ecCc----eeeEEEEEE-cCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 016224          269 LKGH----SLAVVSLVV-GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFAT  341 (393)
Q Consensus       269 ~~~~----~~~v~~l~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~  341 (393)
                      .+.|    .....|++- ...++++|+.+|.|++||--..+....+.+-..+|.-|...  |++|+.. .+..+.+.++.
T Consensus       422 ~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~  500 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTL  500 (644)
T ss_pred             eeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence            2222    122344444 35699999999999999974334445567777788776655  7766544 35677776653

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.75  E-value=2.7  Score=42.75  Aligned_cols=34  Identities=9%  Similarity=-0.015  Sum_probs=27.8

Q ss_pred             CCCCcEEEEEEeCC-----EEEEEeCCCcEEEEEeccCC
Q 016224          227 GPVGQVYAMAVGND-----LLFAGTQDGAILAWKFNVTT  260 (393)
Q Consensus       227 ~~~~~v~~l~~~~~-----~l~~~~~dg~I~vwd~~~~~  260 (393)
                      .....|..+.|+|.     .|++-+.|+++++||+....
T Consensus       144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence            45567889999875     88899999999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.71  E-value=2.9  Score=42.85  Aligned_cols=147  Identities=18%  Similarity=0.187  Sum_probs=90.0

Q ss_pred             EEEEeCC---EEEEEeC----------CCcEEEEEeccCCccccCceeecCceeeEEEEE-EcCCEEEEecCCCcEEEee
Q 016224          234 AMAVGND---LLFAGTQ----------DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLV-VGANKLYSGSMDNSIRVWN  299 (393)
Q Consensus       234 ~l~~~~~---~l~~~~~----------dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~-~~~~~l~sg~~dg~i~iwd  299 (393)
                      ++.|..|   ++++|+.          .|.|.++.+... ...+.+.... -.+.+.++. +++.++|.  -...|++|+
T Consensus       779 s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~-~~L~~v~e~~-v~Gav~aL~~fngkllA~--In~~vrLye  854 (1096)
T KOG1897|consen  779 SCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL-NSLELVAETV-VKGAVYALVEFNGKLLAG--INQSVRLYE  854 (1096)
T ss_pred             eeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC-Cceeeeeeee-eccceeehhhhCCeEEEe--cCcEEEEEE
Confidence            3345444   6666643          477888887762 2123333322 234455554 45555543  456899999


Q ss_pred             CCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCc-ceEEEEeecCCccEEEEEeeeCCCCCcEEEEE
Q 016224          300 LETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSG-NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS  376 (393)
Q Consensus       300 ~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~  376 (393)
                      +.+.+.++.-..+..++..+...  ++.+++|..-+.+.+...+..+ .+..+...-.....+++.+..+.    .++.+
T Consensus       855 ~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d----~ylga  930 (1096)
T KOG1897|consen  855 WTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDD----TYLGA  930 (1096)
T ss_pred             ccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCc----eEEee
Confidence            99887777666677777766655  8999999998888876665433 34444444444556666555432    46666


Q ss_pred             eCCCeEEEEeCC
Q 016224          377 CNDNSVRFYDLP  388 (393)
Q Consensus       377 s~dg~I~iwd~~  388 (393)
                      ..+|.+.+-..+
T Consensus       931 e~~gNlf~v~~d  942 (1096)
T KOG1897|consen  931 ENSGNLFTVRKD  942 (1096)
T ss_pred             cccccEEEEEec
Confidence            677877776554

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.71  E-value=1.7  Score=40.16  Aligned_cols=255  Identities=13%  Similarity=0.052  Sum_probs=116.1

Q ss_pred             ecCCC--eEEEEECCCCcEEEEEecCCc-CCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEE---EE
Q 016224          125 GEKCK--FLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC---MI  198 (393)
Q Consensus       125 g~~dg--~i~vwd~~~~~~~~~~l~~h~-~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~---~~  198 (393)
                      +..+|  .+++.|+.++ + +.+|..+. .......++++++.|+-......|+..|+++.+....+..+.....   +.
T Consensus        54 s~~dg~~nly~lDL~t~-~-i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v  131 (386)
T PF14583_consen   54 SDFDGNRNLYLLDLATG-E-ITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWV  131 (386)
T ss_dssp             E-TTSS-EEEEEETTT--E-EEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEE
T ss_pred             eccCCCcceEEEEcccC-E-EEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccccccccee
Confidence            44444  6777788886 3 34444433 2222456678888887776667899999999987777776655432   22


Q ss_pred             --eCCCEEEEE----c-------------------CCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeC---
Q 016224          199 --SEGPWIFIG----V-------------------TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQ---  247 (393)
Q Consensus       199 --~~~~~l~~~----~-------------------~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~---  247 (393)
                        +++..++..    .                   ...|.-.|+.+++...+......+..+.|+|.   +|+-+-+   
T Consensus       132 ~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw  211 (386)
T PF14583_consen  132 ANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPW  211 (386)
T ss_dssp             E-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-T
T ss_pred             eCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCc
Confidence              345544331    1                   12456667888877777677778888999987   4444332   


Q ss_pred             CCc-EEEEEeccCCccccCceeecCceeeEEE--EEEcCCEEE-----EecCCCcEEEeeCCCcceeeEeccCccceEEE
Q 016224          248 DGA-ILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLY-----SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSL  319 (393)
Q Consensus       248 dg~-I~vwd~~~~~~~~~~~~~~~~~~~~v~~--l~~~~~~l~-----sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l  319 (393)
                      +.. -+||-++.......++..... ...+..  ...+|..|.     .++.+..|.-+|+.+++.......  ....-+
T Consensus       212 ~~Vd~RiW~i~~dg~~~~~v~~~~~-~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~  288 (386)
T PF14583_consen  212 DLVDQRIWTINTDGSNVKKVHRRME-GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHF  288 (386)
T ss_dssp             TTSS-SEEEEETTS---EESS---T-TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEE
T ss_pred             ceeceEEEEEEcCCCcceeeecCCC-CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--Cceeee
Confidence            221 367777665432222222111 111111  122454322     123355677788888765332221  122222


Q ss_pred             EEc--CCEEEEEeCCC----------------cEEEEEcCCCcceEEEEeec---------CCccEEEEEeeeCCCCCcE
Q 016224          320 LCW--DQFLLSCSLDK----------------TIKVWFATDSGNLEVTYTHN---------EEHGVLALCGMPDSEGKPV  372 (393)
Q Consensus       320 ~~~--~~~l~s~s~dg----------------~i~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~  372 (393)
                      ..+  +++++-=+.|.                .|+++++..+.. ..+..|.         ....---..|+||+  +.+
T Consensus       289 ~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~-~~l~~h~~sw~v~~~~~q~~hPhp~FSPDg--k~V  365 (386)
T PF14583_consen  289 MSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF-RKLARHDTSWKVLDGDRQVTHPHPSFSPDG--KWV  365 (386)
T ss_dssp             EE-TTSSEEEEEE-------------------EEEEEETTTTEE-EEEEE-------BTTBSSTT----EE-TTS--SEE
T ss_pred             EEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCce-eeeeeccCcceeecCCCccCCCCCccCCCC--CEE
Confidence            222  44544333332                466777765433 2233221         11123456788874  457


Q ss_pred             EEEEeCCCeEEEEeC
Q 016224          373 LLCSCNDNSVRFYDL  387 (393)
Q Consensus       373 l~s~s~dg~I~iwd~  387 (393)
                      |+++...|...||-+
T Consensus       366 lF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  366 LFRSDMEGPPAVYLV  380 (386)
T ss_dssp             EEEE-TTSS-EEEEE
T ss_pred             EEECCCCCCccEEEE
Confidence            778878888777654

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.67  E-value=0.081  Score=50.79  Aligned_cols=89  Identities=10%  Similarity=0.079  Sum_probs=70.2

Q ss_pred             cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CceE---EEEeCCCEEEEE-cCCeEEEEECCCCceee
Q 016224          150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-GEVG---CMISEGPWIFIG-VTNFVKAWNTQTNTDLS  224 (393)
Q Consensus       150 ~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~~~---~~~~~~~~l~~~-~~~~i~v~d~~~~~~~~  224 (393)
                      ...|.-+.|+|.-.++|++..+|.|.+..+. .+.+.++..+ ..+.   ++-++|+++++| .||+|++.|+.++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3567889999999999999999999999988 7778888743 3333   455799999999 88999999999988763


Q ss_pred             e--cCCCCcEEEEEEeC
Q 016224          225 L--SGPVGQVYAMAVGN  239 (393)
Q Consensus       225 ~--~~~~~~v~~l~~~~  239 (393)
                      -  ......|.++-|++
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            3  44556677776664

>PHA02790 Kelch-like protein; Provisional

Probab=95.65  E-value=0.63  Score=45.23  Aligned_cols=171  Identities=11%  Similarity=0.033  Sum_probs=84.0

Q ss_pred             eEEEEECCCCceeeecC---CCCcEEEEEEeCCEEEEEeCC--CcEEEEEeccCCccccCceeecCceeeEEEEEEcCCE
Q 016224          211 FVKAWNTQTNTDLSLSG---PVGQVYAMAVGNDLLFAGTQD--GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK  285 (393)
Q Consensus       211 ~i~v~d~~~~~~~~~~~---~~~~v~~l~~~~~~l~~~~~d--g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  285 (393)
                      .+..||..+++-.....   .......+.....+.++|+.+  ..+..||....  .+.....+............++..
T Consensus       288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n--~W~~~~~l~~~r~~~~~~~~~g~I  365 (480)
T PHA02790        288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDA--AWVNMPSLLKPRCNPAVASINNVI  365 (480)
T ss_pred             eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCC--eEEECCCCCCCCcccEEEEECCEE
Confidence            57788988876543222   222223333444466777654  35777776543  223333332222223344556777


Q ss_pred             EEEecCCC---cEEEeeCCCcceee--EeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEE
Q 016224          286 LYSGSMDN---SIRVWNLETLQCIQ--TLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLA  360 (393)
Q Consensus       286 l~sg~~dg---~i~iwd~~~~~~~~--~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  360 (393)
                      .+.|+.++   .+..||.++.+-..  .+.........+.+.+...+.|   |.+.+||..+. ....+........-..
T Consensus       366 YviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~-~W~~~~~m~~~r~~~~  441 (480)
T PHA02790        366 YVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSN-TWTLIDDPIYPRDNPE  441 (480)
T ss_pred             EEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCC-cEeEcCCCCCCccccE
Confidence            77777553   47788887644322  1221112222334445555555   35778888643 2332222111111111


Q ss_pred             EEeeeCCCCCcEEEEEeCC-----CeEEEEeCCcee
Q 016224          361 LCGMPDSEGKPVLLCSCND-----NSVRFYDLPSVI  391 (393)
Q Consensus       361 ~~~~~~~~~~~~l~s~s~d-----g~I~iwd~~s~~  391 (393)
                      ++..    ++++.+.|+.+     ..|..||..+.+
T Consensus       442 ~~v~----~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        442 LIIV----DNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             EEEE----CCEEEEECCcCCCcccceEEEEECCCCe
Confidence            1111    33377777654     468888887653

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.62  E-value=0.16  Score=50.58  Aligned_cols=102  Identities=14%  Similarity=0.159  Sum_probs=75.1

Q ss_pred             EEEEeCC--EEEEEe----CCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC--EEEEecCCCcEEEeeCCCcce
Q 016224          234 AMAVGND--LLFAGT----QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQC  305 (393)
Q Consensus       234 ~l~~~~~--~l~~~~----~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~sg~~dg~i~iwd~~~~~~  305 (393)
                      -..|+|.  +|++++    ..|+|.|| ..++    ++.... .....+.+++|.+.  .|+.|-.-|.+.+|...+.+.
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIf-adtG----EPqr~V-t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~   93 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIF-ADTG----EPQRDV-TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET   93 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEE-ecCC----CCCccc-ccceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence            3456665  555554    46888888 3334    222211 12334567889876  477888899999999988877


Q ss_pred             eeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 016224          306 IQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFAT  341 (393)
Q Consensus       306 ~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~  341 (393)
                      ......|..+|..+.|+  |..|+++..-|.|.+|...
T Consensus        94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            77777899999999999  7899999999999999775

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.51  E-value=1.5  Score=38.23  Aligned_cols=191  Identities=13%  Similarity=0.080  Sum_probs=99.2

Q ss_pred             EEecCCcCCEEEEEecCCCC-EEEEEeCCCcEEEEECCCCeEEEEEecCC--ceE--EEEeCCCEEEEE-cCCeEEEEEC
Q 016224          144 TQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQCAGVINLGG--EVG--CMISEGPWIFIG-VTNFVKAWNT  217 (393)
Q Consensus       144 ~~l~~h~~~I~~i~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~~~--~~~~~~~~l~~~-~~~~i~v~d~  217 (393)
                      +.+.+-...+..|+|.|+.+ ++++....+.|...+. +|+.++.+...+  ...  ....++.++++. .++.+.++++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            45666667799999999766 5555667788888886 588888887653  233  333456666665 3678888887


Q ss_pred             CCCc---------eeee--c-CCCCcEEEEEEeCC--EEEEEeCCCcEEEEEecc--CCccccC-----ceeecCceeeE
Q 016224          218 QTNT---------DLSL--S-GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV--TTNCFEP-----AASLKGHSLAV  276 (393)
Q Consensus       218 ~~~~---------~~~~--~-~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~--~~~~~~~-----~~~~~~~~~~v  276 (393)
                      ....         .+.+  . .+...+-.++|++.  .|+++-+..-..+|.+..  .......     ..........+
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            3321         0111  1 24456889999886  666777777777777765  1110000     00011122345


Q ss_pred             EEEEEcC---CEEEEecCCCcEEEeeCCCcceeeEeccCc---------cceEEEEEc-CCEEEEEeCCCcEE
Q 016224          277 VSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLTEHT---------SVVMSLLCW-DQFLLSCSLDKTIK  336 (393)
Q Consensus       277 ~~l~~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~l~~~-~~~l~s~s~dg~i~  336 (393)
                      .++++++   ++++.......|..+| .+|+.+..+.-..         ..--.|+++ ...|...++-+..+
T Consensus       174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy  245 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFY  245 (248)
T ss_dssp             -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEE
T ss_pred             cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEE
Confidence            6677763   4777788889999999 6677766654222         134566666 22344444444333

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.46  E-value=2.3  Score=40.50  Aligned_cols=172  Identities=12%  Similarity=0.073  Sum_probs=101.6

Q ss_pred             eEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe---CC-CcEEEEECCCCeEEEEEe--cCCceEEEEeCCCE
Q 016224          130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS---KD-ETVRVWDCASGQCAGVIN--LGGEVGCMISEGPW  203 (393)
Q Consensus       130 ~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s---~d-g~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~  203 (393)
                      .+.+=|.+ + .....+..-...+..-+|+|+++.++-.+   .. ..+.++++++++......  .....-.+.++++.
T Consensus       174 ~l~~~D~d-g-~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~  251 (425)
T COG0823         174 ELALGDYD-G-YNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSK  251 (425)
T ss_pred             eEEEEccC-C-cceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCE
Confidence            44444443 4 34445554556777788999988766542   22 469999999987655554  34445667788888


Q ss_pred             EEEE--cCC--eEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeE
Q 016224          204 IFIG--VTN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV  276 (393)
Q Consensus       204 l~~~--~~~--~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v  276 (393)
                      |+..  .++  .|.++|+.++....+....+.-..=.|+|+   ++++.+..|.-.||-....... ....+...-....
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~-~~riT~~~~~~~~  330 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ-VTRLTFSGGGNSN  330 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc-eeEeeccCCCCcC
Confidence            7765  334  788889988886555544444445667777   6666777777555544433221 1112222222224


Q ss_pred             EEEEEcCCEEEEecC-CCc--EEEeeCCCcc
Q 016224          277 VSLVVGANKLYSGSM-DNS--IRVWNLETLQ  304 (393)
Q Consensus       277 ~~l~~~~~~l~sg~~-dg~--i~iwd~~~~~  304 (393)
                      ..++.++++|+..+. +|.  |.+.|+.++.
T Consensus       331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             ccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            455667777665553 344  6666665554

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.28  E-value=3.5  Score=41.09  Aligned_cols=183  Identities=11%  Similarity=0.083  Sum_probs=87.9

Q ss_pred             cCCEEEEEecCCCCEEEEEe------CCC--cEEEEECCCCeEEEEEecCC-ceEEEEeCCCEEEEEcC-----------
Q 016224          150 QKVVSGITLPSGSDKLYSGS------KDE--TVRVWDCASGQCAGVINLGG-EVGCMISEGPWIFIGVT-----------  209 (393)
Q Consensus       150 ~~~I~~i~~s~~~~~l~s~s------~dg--~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~-----------  209 (393)
                      ...+.+.+++|+++.++...      .|.  .|.+++.. +.......... ..-.+.+++..+.+..+           
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            34678899999999887665      244  44444542 22222222111 12233345454443322           


Q ss_pred             --CeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEec---cCCccccCceeec-CceeeEEEEEE
Q 016224          210 --NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN---VTTNCFEPAASLK-GHSLAVVSLVV  281 (393)
Q Consensus       210 --~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~---~~~~~~~~~~~~~-~~~~~v~~l~~  281 (393)
                        +.+.+.++..+....  .....|..+.|++|  .++... ++.|++--+.   .+.........+. .-...+..+.|
T Consensus       428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W  504 (591)
T PRK13616        428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW  504 (591)
T ss_pred             CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence              234444444433322  33567999999999  444333 4777773322   2211111111121 22223467778


Q ss_pred             c-CCEEEEecCCCcEEEeeCCC-cceeeEecc--CccceEEEEEcCCEEEEEeCCCcEE
Q 016224          282 G-ANKLYSGSMDNSIRVWNLET-LQCIQTLTE--HTSVVMSLLCWDQFLLSCSLDKTIK  336 (393)
Q Consensus       282 ~-~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~--~~~~v~~l~~~~~~l~s~s~dg~i~  336 (393)
                      . +..|+++..++...+|-+.- |.....+..  ....+.+|+-....|+....++.+.
T Consensus       505 ~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~  563 (591)
T PRK13616        505 RTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDARAVLQ  563 (591)
T ss_pred             ecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCCceEE
Confidence            5 33455655555444454321 222222222  2455666666655555555555333

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.17  E-value=0.87  Score=39.85  Aligned_cols=43  Identities=14%  Similarity=0.227  Sum_probs=38.1

Q ss_pred             CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe
Q 016224          127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS  169 (393)
Q Consensus       127 ~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s  169 (393)
                      .-|.|-|||...+++.+.++..|.-.-..+.+.+||+.|+.+.
T Consensus       138 ~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         138 NRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             CCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            3467999999999999999999998899999999999988764

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.12  E-value=1.3  Score=44.42  Aligned_cols=103  Identities=12%  Similarity=0.105  Sum_probs=65.3

Q ss_pred             CEEEEecCCCcEEEeeCCC-------c-------------ceeeEeccCccceEEEEEc----CCEEEEEeCCCcEEEEE
Q 016224          284 NKLYSGSMDNSIRVWNLET-------L-------------QCIQTLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVWF  339 (393)
Q Consensus       284 ~~l~sg~~dg~i~iwd~~~-------~-------------~~~~~~~~~~~~v~~l~~~----~~~l~s~s~dg~i~iwd  339 (393)
                      +.|+.+..||.|.+|.+++       .             ++...+. -...++.+++.    .++||+++....|.||-
T Consensus       115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa  193 (717)
T PF08728_consen  115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA  193 (717)
T ss_pred             eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence            4677777788888885532       0             0111111 23356778876    45778888888888886


Q ss_pred             cCCC-cceEEEEeecCCccEEEEEeeeCCCCCc---EEEEEeCCCeEEEEeC
Q 016224          340 ATDS-GNLEVTYTHNEEHGVLALCGMPDSEGKP---VLLCSCNDNSVRFYDL  387 (393)
Q Consensus       340 ~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~l~s~s~dg~I~iwd~  387 (393)
                      .... .+......+.....|-+++|.++..+..   .|++++-.|.+-+|++
T Consensus       194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            6442 2222222334555688899998874433   7888899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.11  E-value=3  Score=39.21  Aligned_cols=186  Identities=14%  Similarity=0.154  Sum_probs=115.8

Q ss_pred             ecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC---CCcEEEEECCCCeEEEEEecCC-c-eEEEEe
Q 016224          125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK---DETVRVWDCASGQCAGVINLGG-E-VGCMIS  199 (393)
Q Consensus       125 g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~-~-~~~~~~  199 (393)
                      ...+..|.+.|..+. +.+....--. .-..++++++++.++.+..   ++++.+.|..+++.+.+..... + -..+.+
T Consensus        92 ~~~~~~v~vid~~~~-~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p  169 (381)
T COG3391          92 TGDSNTVSVIDTATN-TVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDP  169 (381)
T ss_pred             cCCCCeEEEEcCccc-ceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECC
Confidence            344788899997765 4444333222 5678999999988887766   6899999999999888866543 2 233446


Q ss_pred             CCCEEEEE--cCCeEEEEECCCCceee-----ecCCCCcEEEEEEeCC--EEEEEeCC---CcEEEEEeccCCccccCce
Q 016224          200 EGPWIFIG--VTNFVKAWNTQTNTDLS-----LSGPVGQVYAMAVGND--LLFAGTQD---GAILAWKFNVTTNCFEPAA  267 (393)
Q Consensus       200 ~~~~l~~~--~~~~i~v~d~~~~~~~~-----~~~~~~~v~~l~~~~~--~l~~~~~d---g~I~vwd~~~~~~~~~~~~  267 (393)
                      ++..+.+.  .++.|.+.|........     ..........+.++++  .+.+....   +.+...|.......... .
T Consensus       170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~-~  248 (381)
T COG3391         170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD-L  248 (381)
T ss_pred             CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec-c
Confidence            88866665  47899999987776653     1222333455666666  33333322   57888777765321100 0


Q ss_pred             eecCceeeEEEEEEcCCEEEEec-CCCcEEEeeCCCcceeeEeccCc
Q 016224          268 SLKGHSLAVVSLVVGANKLYSGS-MDNSIRVWNLETLQCIQTLTEHT  313 (393)
Q Consensus       268 ~~~~~~~~v~~l~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~  313 (393)
                      ....-...-..+.+.+..+++.. ..+.+.+.|..+.+....+....
T Consensus       249 ~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~  295 (381)
T COG3391         249 PVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGN  295 (381)
T ss_pred             ccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccc
Confidence            01100122234556677766663 45899999999888777665443

>smart00356 ZnF_C3H1 zinc finger

Probab=94.90  E-value=0.017  Score=31.01  Aligned_cols=22  Identities=23%  Similarity=0.809  Sum_probs=19.1

Q ss_pred             cceeeeecccccCCCC-CCcccc
Q 016224           35 QKVCNYWRAGKCNRFP-CPYLHR   56 (393)
Q Consensus        35 ~~~~~~~~~~~~~~~~-~~~~~~   56 (393)
                      .++|.+|+.|.|++-+ |+|+|.
T Consensus         4 ~~~C~~~~~g~C~~g~~C~~~H~   26 (27)
T smart00356        4 TELCKFFKRGYCPYGDRCKFAHP   26 (27)
T ss_pred             CCcCcCccCCCCCCCCCcCCCCc
Confidence            4589999999999976 999985

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=94.71  E-value=4  Score=42.25  Aligned_cols=172  Identities=11%  Similarity=0.131  Sum_probs=109.0

Q ss_pred             eEEEEECCCCceeeecCCC-----CcEEEEEEeCC----EEEEEe-----------CCCcEEEEEeccCCccccCceeec
Q 016224          211 FVKAWNTQTNTDLSLSGPV-----GQVYAMAVGND----LLFAGT-----------QDGAILAWKFNVTTNCFEPAASLK  270 (393)
Q Consensus       211 ~i~v~d~~~~~~~~~~~~~-----~~v~~l~~~~~----~l~~~~-----------~dg~I~vwd~~~~~~~~~~~~~~~  270 (393)
                      .|+++|..+++.+....+.     -.+.++.|+..    +++++.           .+|.++.|++-......+.+... 
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T-  932 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKT-  932 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeecc-
Confidence            4788888877766332222     23555556443    333332           24557778776654433333332 


Q ss_pred             CceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEecc--CccceEEEEEcCCEEEEEeCCCcEEEEEcCCC-cceE
Q 016224          271 GHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTE--HTSVVMSLLCWDQFLLSCSLDKTIKVWFATDS-GNLE  347 (393)
Q Consensus       271 ~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~-~~~~  347 (393)
                      .-...+.+++...+++++| ....+++||+-..++++....  -...|+.+.+.+..+++|...-.+.++-.+.. .++.
T Consensus       933 ~~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~ 1011 (1205)
T KOG1898|consen  933 EIPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLI 1011 (1205)
T ss_pred             CCCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEE
Confidence            2356677888777766665 457899999988777655442  35567888888899999988777777665543 3445


Q ss_pred             EEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          348 VTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       348 ~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      .+.....+..++++.+....    .++.+..=|.+.+-.++
T Consensus      1012 ~fadD~~pR~Vt~~~~lD~~----tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1012 VFADDPVPRHVTALELLDYD----TVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             EEeCCCccceeeEEEEecCC----ceeeccccCcEEEEECC
Confidence            55555555567777666443    48888888888877665

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.65  E-value=2.8  Score=36.70  Aligned_cols=155  Identities=10%  Similarity=0.015  Sum_probs=88.0

Q ss_pred             CcEEEEEE-eCC-EEEEEeCCC--cEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEE-EecCCCcEEEeeCCCcc
Q 016224          230 GQVYAMAV-GND-LLFAGTQDG--AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLY-SGSMDNSIRVWNLETLQ  304 (393)
Q Consensus       230 ~~v~~l~~-~~~-~l~~~~~dg--~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~-sg~~dg~i~iwd~~~~~  304 (393)
                      .....+.| ..+ ++-+.+.-|  .|+.+|+.++...  ....+.. ...--.++.-++.|+ ..=.++...+||..+.+
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~--~~~~l~~-~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~  121 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVL--QSVPLPP-RYFGEGITILGDKLYQLTWKEGTGFVYDPNTLK  121 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEE--EEEE-TT-T--EEEEEEETTEEEEEESSSSEEEEEETTTTE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEE--EEEECCc-cccceeEEEECCEEEEEEecCCeEEEEccccce
Confidence            44567788 555 555666655  5888888876421  1112221 111223333345444 34468899999999999


Q ss_pred             eeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccE---EEEEeeeCCCCCcEEEEEeCCCe
Q 016224          305 CIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGV---LALCGMPDSEGKPVLLCSCNDNS  381 (393)
Q Consensus       305 ~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~~~l~s~s~dg~  381 (393)
                      .+.++.-. ..=..++.+++.|+.......|+++|..+.+....+.......++   ..+.+.    ++.+.|=-=....
T Consensus       122 ~~~~~~y~-~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i----~G~IyANVW~td~  196 (264)
T PF05096_consen  122 KIGTFPYP-GEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI----NGKIYANVWQTDR  196 (264)
T ss_dssp             EEEEEE-S-SS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE----TTEEEEEETTSSE
T ss_pred             EEEEEecC-CcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE----cCEEEEEeCCCCe
Confidence            99988643 466788888888888888889999999877766665554433333   334443    2223333334556


Q ss_pred             EEEEeCCceee
Q 016224          382 VRFYDLPSVII  392 (393)
Q Consensus       382 I~iwd~~s~~l  392 (393)
                      |...|..+|++
T Consensus       197 I~~Idp~tG~V  207 (264)
T PF05096_consen  197 IVRIDPETGKV  207 (264)
T ss_dssp             EEEEETTT-BE
T ss_pred             EEEEeCCCCeE
Confidence            77777777654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.61  E-value=2.2  Score=35.67  Aligned_cols=149  Identities=11%  Similarity=0.012  Sum_probs=87.6

Q ss_pred             CCCEEEEEeCC--CcEEEEECCCCeEEEEEecCC-ce--EEEEe--CCCEEEEEcCCeEEEEECCCCceeeecCCCCcEE
Q 016224          161 GSDKLYSGSKD--ETVRVWDCASGQCAGVINLGG-EV--GCMIS--EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVY  233 (393)
Q Consensus       161 ~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~-~~--~~~~~--~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~  233 (393)
                      ++.++.+.+.-  ..|++||+.+++.+....... .+  ..+..  +.-+..+=.++.-..+|..+-+.+......+.=.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW  134 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW  134 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence            44566666543  479999999999988877662 11  11111  2223344477888889988888776666667778


Q ss_pred             EEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCce-eeEEEEEE-cCCEEEEecCCCcEEEeeCCCcceeeEe
Q 016224          234 AMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHS-LAVVSLVV-GANKLYSGSMDNSIRVWNLETLQCIQTL  309 (393)
Q Consensus       234 ~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~-~~v~~l~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~  309 (393)
                      .++...+.|+.+....+++.-|..+-...........+.. ..+..+.| +|...|---.+..|...|..+|+.+..+
T Consensus       135 gLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~wi  212 (262)
T COG3823         135 GLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWI  212 (262)
T ss_pred             eeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence            8888777777777777777777655432212222222211 11223333 3434444444556666677777766554

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.56  E-value=0.15  Score=31.55  Aligned_cols=33  Identities=21%  Similarity=0.283  Sum_probs=28.1

Q ss_pred             cCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          353 NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       353 ~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      .....+..++|+|..+   +||.++.||.|.++.+.
T Consensus         9 ~l~~~v~~~~w~P~md---LiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen    9 NLPSRVSCMSWCPTMD---LIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCCcEEEEEECCCCC---EEEEEECCCeEEEEECC
Confidence            3344588999999887   99999999999999984

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=94.56  E-value=4.2  Score=38.24  Aligned_cols=251  Identities=14%  Similarity=0.134  Sum_probs=135.0

Q ss_pred             EEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe-CCCcEEEEECCCCeEEEEEecC---CceEEEEeCCCEEEE
Q 016224          131 LHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVWDCASGQCAGVINLG---GEVGCMISEGPWIFI  206 (393)
Q Consensus       131 i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~  206 (393)
                      +.+++..+. +....+..+. ....+...+++..++... ....+.+.+.............   ..-..+.+.+..+.+
T Consensus        13 ~~v~~~~~~-~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv   90 (381)
T COG3391          13 VSVINTGTN-KVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYV   90 (381)
T ss_pred             eEEEeeccc-EEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEE
Confidence            566666555 4444444343 455677778775444433 2224555555422222222222   111233345554444


Q ss_pred             E--cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeC---CCcEEEEEeccCCccccCceee-cCceeeEEE
Q 016224          207 G--VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ---DGAILAWKFNVTTNCFEPAASL-KGHSLAVVS  278 (393)
Q Consensus       207 ~--~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~---dg~I~vwd~~~~~~~~~~~~~~-~~~~~~v~~  278 (393)
                      .  .++.|.+.|..+.+.............++++++  .+.++..   ++.+.+.|..+...    .... .+....-..
T Consensus        91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~----~~~~~vG~~P~~~a  166 (381)
T COG3391          91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV----TATIPVGNTPTGVA  166 (381)
T ss_pred             ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE----EEEEecCCCcceEE
Confidence            3  468999999888877744444446777888776  4444333   67888888776532    2222 222222233


Q ss_pred             EEEcCCEEEE-ecCCCcEEEeeCCCcceee-E----eccCcc-ceEEEEEcCCEEEEEeCC---CcEEEEEcCCCcceEE
Q 016224          279 LVVGANKLYS-GSMDNSIRVWNLETLQCIQ-T----LTEHTS-VVMSLLCWDQFLLSCSLD---KTIKVWFATDSGNLEV  348 (393)
Q Consensus       279 l~~~~~~l~s-g~~dg~i~iwd~~~~~~~~-~----~~~~~~-~v~~l~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~  348 (393)
                      +..+++.++. -..++.|.+.|..+..... .    +..... ....+..++.++......   +.+...|..+......
T Consensus       167 ~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~  246 (381)
T COG3391         167 VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT  246 (381)
T ss_pred             ECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence            3445665444 4578999999987665553 1    221222 223344446654444332   5888888876655444


Q ss_pred             EEeecCCccEEEEEeeeCCCCCcEEEEE-eCCCeEEEEeCCcee
Q 016224          349 TYTHNEEHGVLALCGMPDSEGKPVLLCS-CNDNSVRFYDLPSVI  391 (393)
Q Consensus       349 ~~~~~~~~~v~~~~~~~~~~~~~~l~s~-s~dg~I~iwd~~s~~  391 (393)
                      ....... ....+...|++.   ++... +..+.+.+-|..+..
T Consensus       247 ~~~~~~~-~~~~v~~~p~g~---~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         247 DLPVGSG-APRGVAVDPAGK---AAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             ccccccC-CCCceeECCCCC---EEEEEecCCCeEEEEeCCCCc
Confidence            2222222 244455655544   55555 334778888776654

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=94.49  E-value=2.8  Score=43.35  Aligned_cols=167  Identities=13%  Similarity=0.160  Sum_probs=105.6

Q ss_pred             eEEEEECCCCcEEEEEecCC----cCCEEEEEecCCCC--EEEEEeC-----------CCcEEEEECC-CCe---EEEEE
Q 016224          130 FLHSWTVGDGFKLLTQLEGH----QKVVSGITLPSGSD--KLYSGSK-----------DETVRVWDCA-SGQ---CAGVI  188 (393)
Q Consensus       130 ~i~vwd~~~~~~~~~~l~~h----~~~I~~i~~s~~~~--~l~s~s~-----------dg~v~iwd~~-~~~---~~~~~  188 (393)
                      .|++.|..++ +.+..+...    .-.|.++.|+....  +++.+..           +|.+..|++- .++   .+...
T Consensus       854 ~I~~~d~~s~-~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T  932 (1205)
T KOG1898|consen  854 SIRVFDPKSG-KIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKT  932 (1205)
T ss_pred             eEEEEcCCCC-ceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeecc
Confidence            4788887776 444433321    23566677754332  3444332           3446666642 333   44445


Q ss_pred             ecCCceEEEEeCCCEEEEEcCCeEEEEECCCCcee---eecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccC
Q 016224          189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEP  265 (393)
Q Consensus       189 ~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~---~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~  265 (393)
                      .....+.++.+....+.+|....+++|++...+.+   .+......|..+.+....+++|...-.|.++..+...+.   
T Consensus       933 ~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~--- 1009 (1205)
T KOG1898|consen  933 EIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQ--- 1009 (1205)
T ss_pred             CCCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCe---
Confidence            56677888888888999999999999999888766   233346788899998889999988888887776665432   


Q ss_pred             ceeecC--ceeeEEEEE-EcCCEEEEecCCCcEEEeeC
Q 016224          266 AASLKG--HSLAVVSLV-VGANKLYSGSMDNSIRVWNL  300 (393)
Q Consensus       266 ~~~~~~--~~~~v~~l~-~~~~~l~sg~~dg~i~iwd~  300 (393)
                      +..+..  -...|+++. .+-+.+|.+..-|.+.+-.+
T Consensus      1010 l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1010 LIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred             EEEEeCCCccceeeEEEEecCCceeeccccCcEEEEEC
Confidence            222222  122344443 35667777777777766654

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.44  E-value=7  Score=40.32  Aligned_cols=254  Identities=12%  Similarity=0.122  Sum_probs=131.0

Q ss_pred             EEEecCCCeEEEEECC-CC-----cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEE-------EEE
Q 016224          122 CMYGEKCKFLHSWTVG-DG-----FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA-------GVI  188 (393)
Q Consensus       122 ~~~g~~dg~i~vwd~~-~~-----~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-------~~~  188 (393)
                      .+.+..+|.+...-+. ++     ..+...+-+..+-..||..-++ ..|++||.-|.=++-.+.+..-.       .++
T Consensus       272 yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~n-g~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~  350 (1096)
T KOG1897|consen  272 YLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDN-GVLFVGSRFGDSQLIKLNTEPDVGSYVVILETF  350 (1096)
T ss_pred             EEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccC-ceEEEeccCCceeeEEccccCCCCchhhhhhhc
Confidence            3456666666554433 22     0111222234444555555544 47888988776666666543222       233


Q ss_pred             ecCCceEEEE-------eCCCEEEEE---cCCeEEEEECCCCc----eeeecCCCCcEEEEE--EeCC---EEEEEeCCC
Q 016224          189 NLGGEVGCMI-------SEGPWIFIG---VTNFVKAWNTQTNT----DLSLSGPVGQVYAMA--VGND---LLFAGTQDG  249 (393)
Q Consensus       189 ~~~~~~~~~~-------~~~~~l~~~---~~~~i~v~d~~~~~----~~~~~~~~~~v~~l~--~~~~---~l~~~~~dg  249 (393)
                      ..-.++..+.       ..++++.++   .|+++++....-+-    ...+.+ ...+..+.  ++++   +|+.+-.+-
T Consensus       351 ~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~e  429 (1096)
T KOG1897|consen  351 VNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFISE  429 (1096)
T ss_pred             ccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEeccc
Confidence            3333433332       135566654   57788887644332    223444 44566666  4433   555544333


Q ss_pred             cEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEE-EcCCEEEE
Q 016224          250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLL-CWDQFLLS  328 (393)
Q Consensus       250 ~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~-~~~~~l~s  328 (393)
                       -++..+... ........+......+.+-...++.|+-.. ...||+++-.  ..+..+..........+ .....++.
T Consensus       430 -Trvl~i~~e-~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~~ti~~~~~n~sqVvv  504 (1096)
T KOG1897|consen  430 -TRVLNISEE-VEETEDPGFSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGKITIGVVSANASQVVV  504 (1096)
T ss_pred             -eEEEEEccc-eEEeccccccccCceEEEEccCCceEEEEe-cccEEEEcch--hhhhcccCCCceEEEEEeecceEEEE
Confidence             334444432 111112222222223333233455544443 3458888754  23455544333333333 33456777


Q ss_pred             EeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCc---EEEEEeCCCeEE
Q 016224          329 CSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP---VLLCSCNDNSVR  383 (393)
Q Consensus       329 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~l~s~s~dg~I~  383 (393)
                      ++.++.+...++.... +.....+..+..+.++.++|-+++..   +++.|.++..+.
T Consensus       505 A~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~  561 (1096)
T KOG1897|consen  505 AGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISM  561 (1096)
T ss_pred             ecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEE
Confidence            7777777777776555 45555555566788898888765555   888888766544

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.13  E-value=5.4  Score=37.87  Aligned_cols=217  Identities=17%  Similarity=0.163  Sum_probs=113.0

Q ss_pred             ecCCCeEEEEECCCCcEEEE-EecCCcCCEEEEEecCCCCEEEEEeCCC-----------cEEEEECCCCeEE--EEEec
Q 016224          125 GEKCKFLHSWTVGDGFKLLT-QLEGHQKVVSGITLPSGSDKLYSGSKDE-----------TVRVWDCASGQCA--GVINL  190 (393)
Q Consensus       125 g~~dg~i~vwd~~~~~~~~~-~l~~h~~~I~~i~~s~~~~~l~s~s~dg-----------~v~iwd~~~~~~~--~~~~~  190 (393)
                      |+....|++.|+.++ +.+. .+..-. . ..+.|.++++.|+....+.           .|..|.+.+....  ..+..
T Consensus       146 G~e~~~l~v~Dl~tg-~~l~d~i~~~~-~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~  222 (414)
T PF02897_consen  146 GSEWYTLRVFDLETG-KFLPDGIENPK-F-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE  222 (414)
T ss_dssp             TSSEEEEEEEETTTT-EEEEEEEEEEE-S-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-
T ss_pred             CCceEEEEEEECCCC-cCcCCcccccc-c-ceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEee
Confidence            444557999999999 5544 333221 1 2389999988877665443           3788888876432  34433


Q ss_pred             CC--c-e--EEEEeCCCEEEEE----cC-CeEEEEECCCC-----ceeeecC-CCCcEEEEEEeCCEEEEEe----CCCc
Q 016224          191 GG--E-V--GCMISEGPWIFIG----VT-NFVKAWNTQTN-----TDLSLSG-PVGQVYAMAVGNDLLFAGT----QDGA  250 (393)
Q Consensus       191 ~~--~-~--~~~~~~~~~l~~~----~~-~~i~v~d~~~~-----~~~~~~~-~~~~v~~l~~~~~~l~~~~----~dg~  250 (393)
                      ..  . .  .....++++++..    .+ ..+.+.+....     ....+.. ..+....+....+.|+.-+    ..+.
T Consensus       223 ~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~  302 (414)
T PF02897_consen  223 PDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGR  302 (414)
T ss_dssp             TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-E
T ss_pred             cCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcE
Confidence            22  2 1  2234588888763    23 46888888875     3333333 3344455555566333322    2356


Q ss_pred             EEEEEeccCCccccCceeecCcee--eEEEEEEcCCEEEEec-CCC--cEEEeeCCCcceeeEec-cCccceEEEEEc--
Q 016224          251 ILAWKFNVTTNCFEPAASLKGHSL--AVVSLVVGANKLYSGS-MDN--SIRVWNLETLQCIQTLT-EHTSVVMSLLCW--  322 (393)
Q Consensus       251 I~vwd~~~~~~~~~~~~~~~~~~~--~v~~l~~~~~~l~sg~-~dg--~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~--  322 (393)
                      |...++...... .....+..+..  .+..+...+++|+... .++  .|+++|+..+.....+. ...+.|..+...  
T Consensus       303 l~~~~l~~~~~~-~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~  381 (414)
T PF02897_consen  303 LVAVDLADPSPA-EWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFD  381 (414)
T ss_dssp             EEEEETTSTSGG-GEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT
T ss_pred             EEEecccccccc-cceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCC
Confidence            766776665321 11113333333  5677777777655444 333  68899998333333333 233334444432  


Q ss_pred             -CCEEEEE-eC--CCcEEEEEcCCCcc
Q 016224          323 -DQFLLSC-SL--DKTIKVWFATDSGN  345 (393)
Q Consensus       323 -~~~l~s~-s~--dg~i~iwd~~~~~~  345 (393)
                       +.+.++- |.  -.++..||+.+++.
T Consensus       382 ~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  382 SDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             -SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             CCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence             2233332 22  24566677765543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=93.57  E-value=7.1  Score=38.98  Aligned_cols=163  Identities=12%  Similarity=0.090  Sum_probs=87.5

Q ss_pred             eEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC------------CcEEEEECCCCeEEEEEecCCceEEE
Q 016224          130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD------------ETVRVWDCASGQCAGVINLGGEVGCM  197 (393)
Q Consensus       130 ~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d------------g~v~iwd~~~~~~~~~~~~~~~~~~~  197 (393)
                      .|.+++....  ....+.+.  ..+.-.|+|+|+.|++.+..            +.+.+.+++.++....+...-....+
T Consensus       380 ~Lwv~~~gg~--~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~w  455 (591)
T PRK13616        380 SLWVGPLGGV--AVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQL  455 (591)
T ss_pred             EEEEEeCCCc--ceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEE
Confidence            5555565333  22223332  37788899998888877532            23333344443332211222222345


Q ss_pred             EeCCCEEEEEcCCeEEE---EECCCCcee-----eecC-CCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccccCce
Q 016224          198 ISEGPWIFIGVTNFVKA---WNTQTNTDL-----SLSG-PVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAA  267 (393)
Q Consensus       198 ~~~~~~l~~~~~~~i~v---~d~~~~~~~-----~~~~-~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~  267 (393)
                      .++|..++.-.++.|.+   -....+...     .+.. ....+.++.|.++ .|+++..++...+|.+.-....... .
T Consensus       456 SpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~-~  534 (591)
T PRK13616        456 SRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDA-L  534 (591)
T ss_pred             CCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccc-c
Confidence            57888888766777776   444444411     1222 2334688899887 5667666666666665543221111 0


Q ss_pred             eecCceeeEEEEEEcCCEEEEecCCCcEEE
Q 016224          268 SLKGHSLAVVSLVVGANKLYSGSMDNSIRV  297 (393)
Q Consensus       268 ~~~~~~~~v~~l~~~~~~l~sg~~dg~i~i  297 (393)
                      .-......+.+++-....++....++.+.+
T Consensus       535 ~~~n~~~~v~~vaa~~~~iyv~~~~g~~~l  564 (591)
T PRK13616        535 PSRNLSAPVVAVAASPSTVYVTDARAVLQL  564 (591)
T ss_pred             CCCCccCceEEEecCCceEEEEcCCceEEe
Confidence            111135567777777666777777775544

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.51  E-value=1.9  Score=41.04  Aligned_cols=132  Identities=13%  Similarity=0.153  Sum_probs=89.1

Q ss_pred             ecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCC-------EEEEEeCCCcEEEEECCCCe--EEEEE-----ec
Q 016224          125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD-------KLYSGSKDETVRVWDCASGQ--CAGVI-----NL  190 (393)
Q Consensus       125 g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~-------~l~s~s~dg~v~iwd~~~~~--~~~~~-----~~  190 (393)
                      +.....|+--|++.| +.+.+.+-|.. |.-+.+.|+.+       .-+.|-.|..|.-||.+-..  .+...     ..
T Consensus       352 ~~~~~~l~klDIE~G-KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~  429 (644)
T KOG2395|consen  352 GGEQDKLYKLDIERG-KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYST  429 (644)
T ss_pred             CCCcCcceeeecccc-eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccc
Confidence            556677888899999 89999987877 77777777543       22345668899999986322  12111     22


Q ss_pred             CCceEEEE--eCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEecc
Q 016224          191 GGEVGCMI--SEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNV  258 (393)
Q Consensus       191 ~~~~~~~~--~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~  258 (393)
                      .....|+.  .+|.+++++.+|.|++||--..... .+.+...+|..+..+.+ ..+.|+.+..+.+.++.-
T Consensus       430 k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~~  501 (644)
T KOG2395|consen  430 KNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTLI  501 (644)
T ss_pred             ccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEec
Confidence            23344444  3566666679999999998333322 56777889999988777 555566677787777654

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.37  E-value=6.7  Score=37.06  Aligned_cols=78  Identities=12%  Similarity=0.108  Sum_probs=46.7

Q ss_pred             CCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEE----cC---------------C--E
Q 016224          229 VGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV----GA---------------N--K  285 (393)
Q Consensus       229 ~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~----~~---------------~--~  285 (393)
                      ...+.++..+|.  +.++...-|.|.++|+...    ..++..++....-..+-.    ..               .  +
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~----~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L  382 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARG----IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL  382 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCC----hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence            345677888887  6666667799999999887    344444443332221110    00               0  1


Q ss_pred             EEEecCCCcEEEeeCCCcceeeEec
Q 016224          286 LYSGSMDNSIRVWNLETLQCIQTLT  310 (393)
Q Consensus       286 l~sg~~dg~i~iwd~~~~~~~~~~~  310 (393)
                      ++-+-.-|.|.||.++++..+..+.
T Consensus       383 vIyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  383 VIYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             EEEeccCCeEEEEecCCCCEEEEEE
Confidence            3334456777777777777766654

>PLN02153 epithiospecifier protein

Probab=92.92  E-value=7.6  Score=35.80  Aligned_cols=143  Identities=10%  Similarity=0.015  Sum_probs=68.4

Q ss_pred             eCCCEEEEE-cC-----CeEEEEECCCCceeeecC------C-CCcEEEEEEeCC-EEEEEeCC-----------CcEEE
Q 016224          199 SEGPWIFIG-VT-----NFVKAWNTQTNTDLSLSG------P-VGQVYAMAVGND-LLFAGTQD-----------GAILA  253 (393)
Q Consensus       199 ~~~~~l~~~-~~-----~~i~v~d~~~~~~~~~~~------~-~~~v~~l~~~~~-~l~~~~~d-----------g~I~v  253 (393)
                      .++++++.| .+     +.+.+||+.+.+-..+..      . ...-.+++...+ +++.|+.+           ..|.+
T Consensus        84 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~  163 (341)
T PLN02153         84 VGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEA  163 (341)
T ss_pred             ECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEE
Confidence            355555554 21     367889988766443221      1 111223344444 66666643           24677


Q ss_pred             EEeccCCccccCceeec---CceeeEEEEEEcCCEEEEecCC-------------CcEEEeeCCCcceeeEe-----ccC
Q 016224          254 WKFNVTTNCFEPAASLK---GHSLAVVSLVVGANKLYSGSMD-------------NSIRVWNLETLQCIQTL-----TEH  312 (393)
Q Consensus       254 wd~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~l~sg~~d-------------g~i~iwd~~~~~~~~~~-----~~~  312 (393)
                      ||+.+..  +..+....   ..........+++++++.++.+             ..|.+||+.+.+-...-     ...
T Consensus       164 yd~~~~~--W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~  241 (341)
T PLN02153        164 YNIADGK--WVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSA  241 (341)
T ss_pred             EECCCCe--EeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCC
Confidence            7776542  22211111   1111112334566655555432             46888998875433211     111


Q ss_pred             ccceEEEEEcCCEEEEEeCC--------------CcEEEEEcCCC
Q 016224          313 TSVVMSLLCWDQFLLSCSLD--------------KTIKVWFATDS  343 (393)
Q Consensus       313 ~~~v~~l~~~~~~l~s~s~d--------------g~i~iwd~~~~  343 (393)
                      ......+.+.+.+++.|+..              ..|..+|+.+.
T Consensus       242 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~  286 (341)
T PLN02153        242 RSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL  286 (341)
T ss_pred             cceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence            12223344446667777742              25677777543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.71  E-value=0.65  Score=27.99  Aligned_cols=32  Identities=19%  Similarity=0.154  Sum_probs=26.4

Q ss_pred             CCEEEEEecCCC---CEEEEEeCCCcEEEEECCCC
Q 016224          151 KVVSGITLPSGS---DKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       151 ~~I~~i~~s~~~---~~l~s~s~dg~v~iwd~~~~  182 (393)
                      ++|.++.|+|+.   ++|+.+-.-|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999743   58888888899999999853

It contains a characteristic DLL sequence motif.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.06  E-value=6.4  Score=39.22  Aligned_cols=97  Identities=10%  Similarity=0.130  Sum_probs=61.9

Q ss_pred             EEEEecCCCcEEEeeCCCcceeeEec-cCccceEEEEEc----CCEEEEEeCCCcEEEEEcC-----CC----cceEEEE
Q 016224          285 KLYSGSMDNSIRVWNLETLQCIQTLT-EHTSVVMSLLCW----DQFLLSCSLDKTIKVWFAT-----DS----GNLEVTY  350 (393)
Q Consensus       285 ~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~----~~~l~s~s~dg~i~iwd~~-----~~----~~~~~~~  350 (393)
                      ..++-+....+.|||.+.+....+-. ...+.|..+.|.    ++.+++.+....|.+|.-.     ..    ..+..+.
T Consensus        43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~  122 (631)
T PF12234_consen   43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID  122 (631)
T ss_pred             EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE
Confidence            33344455689999999877544433 357789999987    6789999999999998532     11    1222221


Q ss_pred             e-ecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          351 T-HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       351 ~-~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                      . .....++.+.+|.+++.    |+.|+ .+.+.|++
T Consensus       123 i~~~T~h~Igds~Wl~~G~----LvV~s-GNqlfv~d  154 (631)
T PF12234_consen  123 ISSHTPHPIGDSIWLKDGT----LVVGS-GNQLFVFD  154 (631)
T ss_pred             eecCCCCCccceeEecCCe----EEEEe-CCEEEEEC
Confidence            1 11224577888887754    55554 35777776

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=92.04  E-value=10  Score=35.34  Aligned_cols=185  Identities=17%  Similarity=0.099  Sum_probs=105.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEecCC--c---eEEEEeCCCEEEEEcCCeEEEEECCCCcee-eecCCC-CcEEEE
Q 016224          163 DKLYSGSKDETVRVWDCASGQCAGVINLGG--E---VGCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPV-GQVYAM  235 (393)
Q Consensus       163 ~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~---~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~-~~v~~l  235 (393)
                      ..++.+..+|.|.-.|.++++.+.......  .   ......+|++++...++.+..+|..+++.. ...... ..+..-
T Consensus        69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~  148 (370)
T COG1520          69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP  148 (370)
T ss_pred             CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence            345566788888888998888765444432  1   112234777777778888999999888776 333333 111111


Q ss_pred             EEeCC-EEEEEeCCCcEEEEEeccCCccccCce----eecCceeeEEEEEEcCCEEEEecC--CCcEEEeeCCCcceeeE
Q 016224          236 AVGND-LLFAGTQDGAILAWKFNVTTNCFEPAA----SLKGHSLAVVSLVVGANKLYSGSM--DNSIRVWNLETLQCIQT  308 (393)
Q Consensus       236 ~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~----~~~~~~~~v~~l~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~  308 (393)
                      .+-.+ .++..+.++.+...|..++...++...    ........+    .....++.+..  ++.+.-.|.++++....
T Consensus       149 ~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~----~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~  224 (370)
T COG1520         149 PVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA----IASGTVYVGSDGYDGILYALNAEDGTLKWS  224 (370)
T ss_pred             cEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce----eecceEEEecCCCcceEEEEEccCCcEeee
Confidence            22223 555555788888888777654322111    111111111    33445555555  66788888888887766


Q ss_pred             eccCc----cce--E-EE----EEcCCEEEEEeCCCcEEEEEcCCCcceEEEEe
Q 016224          309 LTEHT----SVV--M-SL----LCWDQFLLSCSLDKTIKVWFATDSGNLEVTYT  351 (393)
Q Consensus       309 ~~~~~----~~v--~-~l----~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  351 (393)
                      .+.+.    ..+  . .+    ...+.-+..++.++.+...|..+++.+.....
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         225 QKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             eeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence            43211    111  0 11    01133456777788888888887776655554

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.29  E-value=12  Score=34.65  Aligned_cols=215  Identities=13%  Similarity=0.042  Sum_probs=106.1

Q ss_pred             cCCCCEEEEE---------eCCCcEEEEECCCCeEEEEEec--CCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecC
Q 016224          159 PSGSDKLYSG---------SKDETVRVWDCASGQCAGVINL--GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSG  227 (393)
Q Consensus       159 s~~~~~l~s~---------s~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~  227 (393)
                      |||+++++..         +..+.+.|+|+++++.......  ......+.++++.++...++.|.+++..++....+..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~   80 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTT   80 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEecc
Confidence            5677766653         2246789999999876554433  3445667789999999999999999988876553322


Q ss_pred             CC------------------CcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEE
Q 016224          228 PV------------------GQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKL  286 (393)
Q Consensus       228 ~~------------------~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l  286 (393)
                      ..                  +.-..+-|+|+   +++.-..+..|..+.+-.......       .-..+..+..-    
T Consensus        81 dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-------~yp~~~~~~YP----  149 (353)
T PF00930_consen   81 DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-------QYPEVESIRYP----  149 (353)
T ss_dssp             --TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-------SS-EEEEEE------
T ss_pred             ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-------cCCcccccccC----
Confidence            11                  12345778887   334444455555554433211000       00122223221    


Q ss_pred             EEecCCC--cEEEeeCCCcceee--Ee---ccCccceEEEEEc--CCEEEEE--eCCC---cEEEEEcCCCcceEEEEee
Q 016224          287 YSGSMDN--SIRVWNLETLQCIQ--TL---TEHTSVVMSLLCW--DQFLLSC--SLDK---TIKVWFATDSGNLEVTYTH  352 (393)
Q Consensus       287 ~sg~~dg--~i~iwd~~~~~~~~--~~---~~~~~~v~~l~~~--~~~l~s~--s~dg---~i~iwd~~~~~~~~~~~~~  352 (393)
                      ..|...-  .+.|+|+.+++...  ..   ......+..+.|.  +..|+..  ..+.   .+.++|..++.........
T Consensus       150 k~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~  229 (353)
T PF00930_consen  150 KAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET  229 (353)
T ss_dssp             BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE
T ss_pred             CCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec
Confidence            0111112  35667887776532  11   2344567788886  3323332  3332   3666777665543333222


Q ss_pred             cCCccE---EEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          353 NEEHGV---LALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       353 ~~~~~v---~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                       ....+   ....+. ...+..+|.....||--+||-
T Consensus       230 -~~~Wv~~~~~~~~~-~~~~~~~l~~s~~~G~~hly~  264 (353)
T PF00930_consen  230 -SDGWVDVYDPPHFL-GPDGNEFLWISERDGYRHLYL  264 (353)
T ss_dssp             -SSSSSSSSSEEEE--TTTSSEEEEEEETTSSEEEEE
T ss_pred             -CCcceeeecccccc-cCCCCEEEEEEEcCCCcEEEE
Confidence             11111   123332 122334666666777654443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.20  E-value=2.2  Score=42.32  Aligned_cols=74  Identities=22%  Similarity=0.347  Sum_probs=47.1

Q ss_pred             ecCcEEEecCCCeEEEEECCC----CcEEEEE-ecCC--------------------cCCEEEEEecC----CCCEEEEE
Q 016224          118 VQGNCMYGEKCKFLHSWTVGD----GFKLLTQ-LEGH--------------------QKVVSGITLPS----GSDKLYSG  168 (393)
Q Consensus       118 ~~~~~~~g~~dg~i~vwd~~~----~~~~~~~-l~~h--------------------~~~I~~i~~s~----~~~~l~s~  168 (393)
                      ++..++.+..||.+.......    +...... +..+                    ...+..++++.    +..+|++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            566777888888887776553    2111111 1111                    23556667766    77899999


Q ss_pred             eCCCcEEEEECCCCeEEEEEecC
Q 016224          169 SKDETVRVWDCASGQCAGVINLG  191 (393)
Q Consensus       169 s~dg~v~iwd~~~~~~~~~~~~~  191 (393)
                      +.|+++|+||+.+++++.+....
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~~~~  259 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATIDLL  259 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEEETT
T ss_pred             eCCCeEEEEECCCCeEEEEeccc
Confidence            99999999999999998877554

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=91.11  E-value=9.9  Score=36.24  Aligned_cols=169  Identities=15%  Similarity=0.038  Sum_probs=88.2

Q ss_pred             eEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcE--EEEEeccCCccccCceeecCceeeEEEEEEcCCE
Q 016224          211 FVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAI--LAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK  285 (393)
Q Consensus       211 ~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I--~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  285 (393)
                      .+.++++.+++........+.-..-+|+|+   ++++...||..  +++|+.....  ..+....+... -.+++.+|+.
T Consensus       219 ~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~--~~Lt~~~gi~~-~Ps~spdG~~  295 (425)
T COG0823         219 RIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL--PRLTNGFGINT-SPSWSPDGSK  295 (425)
T ss_pred             eEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc--eecccCCcccc-CccCCCCCCE
Confidence            689999998887655555556667788887   67777778875  4555555431  11222222222 3455667776


Q ss_pred             EEE-ecCCC--cEEEeeCCCcceeeEec--cCccceEEEEEcCCEEEEEeC-CCc--EEEEEcCCCcceEEEEeecC---
Q 016224          286 LYS-GSMDN--SIRVWNLETLQCIQTLT--EHTSVVMSLLCWDQFLLSCSL-DKT--IKVWFATDSGNLEVTYTHNE---  354 (393)
Q Consensus       286 l~s-g~~dg--~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~---  354 (393)
                      ++- .+..|  .|.+.|++.... ..+.  ........+..++++|+..+. +|.  |.+.|+.++.....+.....   
T Consensus       296 ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~  374 (425)
T COG0823         296 IVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNES  374 (425)
T ss_pred             EEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCC
Confidence            554 44445  466666665543 3332  222223333344777666554 354  66666665554333222111   


Q ss_pred             ---CccEEEEEeeeCCCCCcEEEEEeCCCeEE
Q 016224          355 ---EHGVLALCGMPDSEGKPVLLCSCNDNSVR  383 (393)
Q Consensus       355 ---~~~v~~~~~~~~~~~~~~l~s~s~dg~I~  383 (393)
                         ...-..+.+......+..|...+.++.+.
T Consensus       375 ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~  406 (425)
T COG0823         375 PSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVS  406 (425)
T ss_pred             CCcCCCCceEEEeccCCCCceEEEeeccceeE
Confidence               01122233333333444666666666655

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=90.99  E-value=11  Score=35.87  Aligned_cols=61  Identities=15%  Similarity=0.212  Sum_probs=29.7

Q ss_pred             ceEEeeEecCcEEEecCCCeEEEEECC-------CCcEEEEEe-cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 016224          111 DILCRNWVQGNCMYGEKCKFLHSWTVG-------DGFKLLTQL-EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA  180 (393)
Q Consensus       111 ~i~c~~~~~~~~~~g~~dg~i~vwd~~-------~~~~~~~~l-~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~  180 (393)
                      ...+.-+...+.+....|..++||+..       ++ .....+ .++...+.++        ++.....|.|+.|+--
T Consensus        28 ~~~~gi~~e~g~Aw~~~d~~l~vW~Y~~~~~s~~~~-~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~f~~~I   96 (422)
T PF08801_consen   28 PCSMGIFPEIGRAWIVVDNRLYVWNYSSTQSSPNDG-SDFPLFDDGSSSSIPGV--------GLVKPKTGRVVFWESI   96 (422)
T ss_dssp             S-EEEEE-TTSEEEEEETTEEEEEE--SS--GG--E-EEEE-----------SE--------EEEE-TT-EEEEES-T
T ss_pred             ceEEEEEcccCEEEEEECCEEEEEeccCCCCCcCcc-cccceecCCCCCCCceE--------EEEEcCCCCEEecccc
Confidence            455566666688888889999999983       33 333334 4445555444        3445567888888743

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.96  E-value=6.1  Score=30.60  Aligned_cols=101  Identities=10%  Similarity=0.139  Sum_probs=65.9

Q ss_pred             cEEEecCCCeEEEEECCCC-------cEEEEEecCCcCCEEEEEecC-----CCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 016224          121 NCMYGEKCKFLHSWTVGDG-------FKLLTQLEGHQKVVSGITLPS-----GSDKLYSGSKDETVRVWDCASGQCAGVI  188 (393)
Q Consensus       121 ~~~~g~~dg~i~vwd~~~~-------~~~~~~l~~h~~~I~~i~~s~-----~~~~l~s~s~dg~v~iwd~~~~~~~~~~  188 (393)
                      .+..++..|+|.|.+....       ...++.|. -...|++|+--+     +.+.|+.|+. ..|..||++...-+..-
T Consensus        12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyk   89 (136)
T PF14781_consen   12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYK   89 (136)
T ss_pred             eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhh
Confidence            3456777888888875532       12334444 446777776532     3456777665 58999999988766655


Q ss_pred             ecCCceEEEEe------CCCEEEEEcCCeEEEEECCCCcee
Q 016224          189 NLGGEVGCMIS------EGPWIFIGVTNFVKAWNTQTNTDL  223 (393)
Q Consensus       189 ~~~~~~~~~~~------~~~~l~~~~~~~i~v~d~~~~~~~  223 (393)
                      ..+..+.++..      +..++++|..-.|.-||.+..+.+
T Consensus        90 e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   90 EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF  130 (136)
T ss_pred             hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence            55555555432      577888888888888887766544

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.23  E-value=18  Score=34.81  Aligned_cols=30  Identities=20%  Similarity=0.114  Sum_probs=21.4

Q ss_pred             cEEEEEEeCC-----EEEEEeCCCcEEEEEeccCC
Q 016224          231 QVYAMAVGND-----LLFAGTQDGAILAWKFNVTT  260 (393)
Q Consensus       231 ~v~~l~~~~~-----~l~~~~~dg~I~vwd~~~~~  260 (393)
                      .+...+|+|+     .|..-+.|..|++||+...+
T Consensus       167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             eeeeccccCCccCCceEEEEecCcEEEEEecCCcc
Confidence            4555667665     67777788888888887654

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=90.21  E-value=28  Score=37.04  Aligned_cols=146  Identities=17%  Similarity=0.134  Sum_probs=89.7

Q ss_pred             EEEEEeC---------CCcEEEEEeccCCcc-------ccCc-eeecCceeeEEEEEEcCCEEEEecCCCcEEEeeC-CC
Q 016224          241 LLFAGTQ---------DGAILAWKFNVTTNC-------FEPA-ASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNL-ET  302 (393)
Q Consensus       241 ~l~~~~~---------dg~I~vwd~~~~~~~-------~~~~-~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~-~~  302 (393)
                      +|++|+.         -|.+.++|+-.-.+.       .+.. ...+...++|.+++--..+|+++. ..+|.||++ +.
T Consensus      1048 ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~-GqKI~v~~l~r~ 1126 (1366)
T KOG1896|consen 1048 YLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQ-GQKIIVRKLDRD 1126 (1366)
T ss_pred             eEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEcc-CcEEEEEEeccC
Confidence            7777753         488999998551110       0111 112335667777765555666654 457999999 44


Q ss_pred             cceee-EeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCc-ceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCC
Q 016224          303 LQCIQ-TLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSG-NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN  380 (393)
Q Consensus       303 ~~~~~-~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg  380 (393)
                      ...+- .|..-.-.+.++..-.++|+.|.--..|.+.-..+.. .+..+......-.+.+..|.-++. ...++++..|+
T Consensus      1127 ~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~-~L~flvsDa~r 1205 (1366)
T KOG1896|consen 1127 SELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGS-NLSFLVSDADR 1205 (1366)
T ss_pred             CcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCC-eeEEEEEcCCC
Confidence            44332 2222233445555557888888887888877664433 333334444456688888988764 34788899999


Q ss_pred             eEEEEeCC
Q 016224          381 SVRFYDLP  388 (393)
Q Consensus       381 ~I~iwd~~  388 (393)
                      .|++|-..
T Consensus      1206 Ni~vy~Y~ 1213 (1366)
T KOG1896|consen 1206 NIHVYMYA 1213 (1366)
T ss_pred             cEEEEEeC
Confidence            99988653

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=90.14  E-value=15  Score=34.71  Aligned_cols=144  Identities=11%  Similarity=0.066  Sum_probs=66.5

Q ss_pred             EEEEEe-CCCcEEEEEeccCCccccCceeecC---c-----ee--eEEEEEEcCCEEEEec------CCCcEEEeeCCCc
Q 016224          241 LLFAGT-QDGAILAWKFNVTTNCFEPAASLKG---H-----SL--AVVSLVVGANKLYSGS------MDNSIRVWNLETL  303 (393)
Q Consensus       241 ~l~~~~-~dg~I~vwd~~~~~~~~~~~~~~~~---~-----~~--~v~~l~~~~~~l~sg~------~dg~i~iwd~~~~  303 (393)
                      +|++.+ ..+.|+|+|+.+.....++.+.+..   +     ..  .+.|+ .+++.++++-      .-|-+.+.|-++.
T Consensus        89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hcl-p~G~imIS~lGd~~G~g~Ggf~llD~~tf  167 (461)
T PF05694_consen   89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCL-PDGRIMISALGDADGNGPGGFVLLDGETF  167 (461)
T ss_dssp             EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE--SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred             cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeec-CCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence            555555 7888999999865443333333321   1     11  11221 2466666632      2356888888888


Q ss_pred             ceeeEeccCccc---eEEEEEc--CCEEEEEe--------------------CCCcEEEEEcCCCcceEEEEeecCCccE
Q 016224          304 QCIQTLTEHTSV---VMSLLCW--DQFLLSCS--------------------LDKTIKVWFATDSGNLEVTYTHNEEHGV  358 (393)
Q Consensus       304 ~~~~~~~~~~~~---v~~l~~~--~~~l~s~s--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v  358 (393)
                      +.+..+......   -..+-+.  .+.++|..                    ...++.+||+.+.+.++.+.-.....-.
T Consensus       168 ~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~p  247 (461)
T PF05694_consen  168 EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMP  247 (461)
T ss_dssp             -EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEE
T ss_pred             cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCce
Confidence            887777643321   1333333  23455543                    2467999999988888777765555557


Q ss_pred             EEEEeeeCCCCCcEEEEEeCCCeEEEE
Q 016224          359 LALCGMPDSEGKPVLLCSCNDNSVRFY  385 (393)
Q Consensus       359 ~~~~~~~~~~~~~~l~s~s~dg~I~iw  385 (393)
                      +.+.|..+.....=++.+.-..+|..|
T Consensus       248 LEvRflH~P~~~~gFvg~aLss~i~~~  274 (461)
T PF05694_consen  248 LEVRFLHDPDANYGFVGCALSSSIWRF  274 (461)
T ss_dssp             EEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred             EEEEecCCCCccceEEEEeccceEEEE
Confidence            788888776544334444444455444

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.10  E-value=0.089  Score=28.26  Aligned_cols=23  Identities=30%  Similarity=0.801  Sum_probs=16.4

Q ss_pred             cceeeeecc-cccCC-CCCCccccc
Q 016224           35 QKVCNYWRA-GKCNR-FPCPYLHRE   57 (393)
Q Consensus        35 ~~~~~~~~~-~~~~~-~~~~~~~~~   57 (393)
                      .+.|.+|.+ |.|.+ .-|+|.|.+
T Consensus         3 ~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    3 TKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             SSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             cccChhhccCCccCCCCCcCccCCC
Confidence            468999999 99999 559999964

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.07  E-value=14  Score=39.43  Aligned_cols=104  Identities=8%  Similarity=0.180  Sum_probs=54.8

Q ss_pred             CCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc-----eEEEEeCCCEEEEEcCCeEEEEECCCCceeee
Q 016224          151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-----VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSL  225 (393)
Q Consensus       151 ~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~  225 (393)
                      .....++|+|...++|.+...|.|+++-...-+..........     +.......+...-.....+.+|........  
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~--  113 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGV--  113 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeeccccccee--
Confidence            3456688999999999999999999998654433322222111     111111222223334445555554332221  


Q ss_pred             cCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccC
Q 016224          226 SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT  259 (393)
Q Consensus       226 ~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~  259 (393)
                       -....+++....+-  . +.+ ..+.+++||..-.
T Consensus       114 -~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~  146 (993)
T KOG1983|consen  114 -FLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRH  146 (993)
T ss_pred             -ecCCcceeccCCCCcch-hcc-cCceeeEeeechh
Confidence             11222333332222  4 555 8888888876543

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=90.00  E-value=18  Score=34.36  Aligned_cols=137  Identities=9%  Similarity=0.102  Sum_probs=78.4

Q ss_pred             CcEEEecCCCeEEEEECCCC-cE---EEEEecCCcCCEEEEEecC----CCCEEEEEeCCCcEEEEECCCC---------
Q 016224          120 GNCMYGEKCKFLHSWTVGDG-FK---LLTQLEGHQKVVSGITLPS----GSDKLYSGSKDETVRVWDCASG---------  182 (393)
Q Consensus       120 ~~~~~g~~dg~i~vwd~~~~-~~---~~~~l~~h~~~I~~i~~s~----~~~~l~s~s~dg~v~iwd~~~~---------  182 (393)
                      +.+++|+..|.++||+...+ ++   ++-+.+ -+.+|..|+.-.    .....+..=.-..+.||.+...         
T Consensus        38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~  116 (418)
T PF14727_consen   38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ  116 (418)
T ss_pred             cEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence            57889999999999997643 12   222222 457888887632    2233333455677888877211         


Q ss_pred             -eEEEEEe--cCCceEEEE--e----C-CCEEEE-EcCCeEEEEECCCCceeeecCCCCcEEEEEEeC--CEEEEEeCCC
Q 016224          183 -QCAGVIN--LGGEVGCMI--S----E-GPWIFI-GVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN--DLLFAGTQDG  249 (393)
Q Consensus       183 -~~~~~~~--~~~~~~~~~--~----~-~~~l~~-~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg  249 (393)
                       +....+.  .......+.  +    . ..++.+ +.||.+.+|+-+.-....+....--.-.+.|.+  |.|++++.+.
T Consensus       117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~  196 (418)
T PF14727_consen  117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSW  196 (418)
T ss_pred             EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCce
Confidence             1111122  222221121  1    2 234444 699999999987765433322222233455554  4889999898


Q ss_pred             cEEEEEec
Q 016224          250 AILAWKFN  257 (393)
Q Consensus       250 ~I~vwd~~  257 (393)
                      .|..|...
T Consensus       197 ~l~~Yky~  204 (418)
T PF14727_consen  197 TLECYKYQ  204 (418)
T ss_pred             eEEEecHH
Confidence            99988764

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.93  E-value=2.7  Score=36.03  Aligned_cols=71  Identities=13%  Similarity=0.141  Sum_probs=49.0

Q ss_pred             ceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEE------ec-------CCcCCEEEEEecCCCCEEEEEeCCCcEEEE
Q 016224          111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQ------LE-------GHQKVVSGITLPSGSDKLYSGSKDETVRVW  177 (393)
Q Consensus       111 ~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~------l~-------~h~~~I~~i~~s~~~~~l~s~s~dg~v~iw  177 (393)
                      ++..+......+++-+.+|.+++||+.++...+..      +.       .....|..+.++.+|.-|++-+ +|....|
T Consensus        14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y   92 (219)
T PF07569_consen   14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY   92 (219)
T ss_pred             ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence            55666666777888999999999999987222222      22       3556788888887777666654 4677888


Q ss_pred             ECCCC
Q 016224          178 DCASG  182 (393)
Q Consensus       178 d~~~~  182 (393)
                      +.+-+
T Consensus        93 ~~~L~   97 (219)
T PF07569_consen   93 SPDLG   97 (219)
T ss_pred             ccccc
Confidence            76543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.52  E-value=2.5  Score=41.90  Aligned_cols=73  Identities=26%  Similarity=0.442  Sum_probs=43.4

Q ss_pred             eCCEEEEEeCCCcEEEEEecc---CCccccCc-----------eee----------cCceeeEEEEEE----cCCEEEEe
Q 016224          238 GNDLLFAGTQDGAILAWKFNV---TTNCFEPA-----------ASL----------KGHSLAVVSLVV----GANKLYSG  289 (393)
Q Consensus       238 ~~~~l~~~~~dg~I~vwd~~~---~~~~~~~~-----------~~~----------~~~~~~v~~l~~----~~~~l~sg  289 (393)
                      ++..|+++..||.+.......   ....+...           ..+          .........+..    +..++++-
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            566888889999998888765   11110000           000          011112233333    45689999


Q ss_pred             cCCCcEEEeeCCCcceeeEec
Q 016224          290 SMDNSIRVWNLETLQCIQTLT  310 (393)
Q Consensus       290 ~~dg~i~iwd~~~~~~~~~~~  310 (393)
                      +.|+++|+||+.+++++.+..
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEec
Confidence            999999999999999976653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.45  E-value=19  Score=37.39  Aligned_cols=73  Identities=11%  Similarity=0.068  Sum_probs=47.5

Q ss_pred             ceE-EeeEecCcEEEecCCCeEEEEECCCCcE--EEEE------e--cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 016224          111 DIL-CRNWVQGNCMYGEKCKFLHSWTVGDGFK--LLTQ------L--EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC  179 (393)
Q Consensus       111 ~i~-c~~~~~~~~~~g~~dg~i~vwd~~~~~~--~~~~------l--~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~  179 (393)
                      .+. |++-..+.+++|+.+|.+.+|.+.....  ....      +  .-++.+|..|...+.-.++++ -.|+.|.++++
T Consensus        17 ~vd~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~-l~dsqi~~~~l   95 (877)
T KOG2063|consen   17 EVDLCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLI-LSDSQIAVHKL   95 (877)
T ss_pred             ccchHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhe-ecCCcceeeec
Confidence            444 8888888999999999999998864300  0000      1  113577777777665555544 34667888887


Q ss_pred             CCCeE
Q 016224          180 ASGQC  184 (393)
Q Consensus       180 ~~~~~  184 (393)
                      .+-+.
T Consensus        96 ~~~~~  100 (877)
T KOG2063|consen   96 PELEP  100 (877)
T ss_pred             Ccccc
Confidence            66544

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=89.33  E-value=3.9  Score=38.59  Aligned_cols=53  Identities=13%  Similarity=0.022  Sum_probs=42.5

Q ss_pred             EEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce
Q 016224          142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV  194 (393)
Q Consensus       142 ~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~  194 (393)
                      ....|......+.+|+.+|++++.|+...=|.|.|+|+.++..++..+.-...
T Consensus       299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA  351 (415)
T PF14655_consen  299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA  351 (415)
T ss_pred             eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc
Confidence            34455556677999999999998888888899999999999888877755443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.09  E-value=27  Score=35.20  Aligned_cols=176  Identities=15%  Similarity=0.128  Sum_probs=86.9

Q ss_pred             CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe------cCCceEEEEeC
Q 016224          127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN------LGGEVGCMISE  200 (393)
Q Consensus       127 ~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~------~~~~~~~~~~~  200 (393)
                      .--.|+|++.. | +++..+.-....+..+.|+.+. .|+....||++.+|++. |+.+....      ...-..+....
T Consensus        62 a~~~I~If~~s-G-~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~  137 (829)
T KOG2280|consen   62 ARPYIRIFNIS-G-QLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFH  137 (829)
T ss_pred             cceeEEEEecc-c-cchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEec
Confidence            34468888864 4 5555554444488899998765 56667899999999985 33333321      12223344444


Q ss_pred             CCEEEEEcCCe-EEEEECCCCceeeecC---CCCcEEEEEEe-CC-----EEEEEeCCCcEEEEEeccCCccccCceeec
Q 016224          201 GPWIFIGVTNF-VKAWNTQTNTDLSLSG---PVGQVYAMAVG-ND-----LLFAGTQDGAILAWKFNVTTNCFEPAASLK  270 (393)
Q Consensus       201 ~~~l~~~~~~~-i~v~d~~~~~~~~~~~---~~~~v~~l~~~-~~-----~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~  270 (393)
                      +.+.+...++. +.+-+........+..   ....-.+.+.. +.     ++.+.-..+ ..++-.....   .....+.
T Consensus       138 ~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~---~q~~~~~  213 (829)
T KOG2280|consen  138 NGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR---VQLHALS  213 (829)
T ss_pred             CceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc---ccccccC
Confidence            44444444443 3333333322222221   11111232222 21     111111111 1112122111   1111122


Q ss_pred             CceeeEEEEEE--cCCEEEEecCCCcEEEeeCCCcceeeEec
Q 016224          271 GHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLT  310 (393)
Q Consensus       271 ~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  310 (393)
                      .....+..++.  +..+|+--..+|.|.+-+....+..-++.
T Consensus       214 ~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  214 WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            12234444444  45688888899999999888777666665

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.01  E-value=10  Score=39.86  Aligned_cols=136  Identities=14%  Similarity=0.091  Sum_probs=79.5

Q ss_pred             cEEEEEEeCC----EEEEEeCCCcEEEEEeccCCccc-cCceeecC------ceeeEEEEEEcCC---EEEEecCCCcEE
Q 016224          231 QVYAMAVGND----LLFAGTQDGAILAWKFNVTTNCF-EPAASLKG------HSLAVVSLVVGAN---KLYSGSMDNSIR  296 (393)
Q Consensus       231 ~v~~l~~~~~----~l~~~~~dg~I~vwd~~~~~~~~-~~~~~~~~------~~~~v~~l~~~~~---~l~sg~~dg~i~  296 (393)
                      .+..+...+|    .++..+.+-.|..||++.-.... +....+..      ......++.|++.   ..+....|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            3444444444    33334445578899987643211 11111222      2233456667754   477778899999


Q ss_pred             EeeCCCcce-eeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEe--ecCCccEEEEEeeeCCC
Q 016224          297 VWNLETLQC-IQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYT--HNEEHGVLALCGMPDSE  368 (393)
Q Consensus       297 iwd~~~~~~-~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~  368 (393)
                      +..+..... +.++ .-....++++|+  |+.++.|-..|++.-|... .+....+..  ......|++++|.....
T Consensus       182 V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~e  256 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQE  256 (1405)
T ss_pred             hhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEeccee
Confidence            888754322 2222 234567899999  7799999999999988663 222222221  11235789999987654

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=88.87  E-value=14  Score=31.67  Aligned_cols=87  Identities=14%  Similarity=0.042  Sum_probs=56.0

Q ss_pred             EEEEEcCC---EEEEecCCCcEEEee--CCCcce-----eeEecc---Ccc---ceEEEEEcCCEEEEEeCCCcEEEEEc
Q 016224          277 VSLVVGAN---KLYSGSMDNSIRVWN--LETLQC-----IQTLTE---HTS---VVMSLLCWDQFLLSCSLDKTIKVWFA  340 (393)
Q Consensus       277 ~~l~~~~~---~l~sg~~dg~i~iwd--~~~~~~-----~~~~~~---~~~---~v~~l~~~~~~l~s~s~dg~i~iwd~  340 (393)
                      ..++|+.+   +.++-+.+-.|.-||  ..+|..     +..++.   ...   .-.++.-+|.+.++.-..++|...|.
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            45667632   456667777887777  555432     333321   111   12444445788888888999999999


Q ss_pred             CCCcceEEEEeecCCccEEEEEeee
Q 016224          341 TDSGNLEVTYTHNEEHGVLALCGMP  365 (393)
Q Consensus       341 ~~~~~~~~~~~~~~~~~v~~~~~~~  365 (393)
                      .+++.+..+.-...  .+++++|--
T Consensus       241 ~tGK~L~eiklPt~--qitsccFgG  263 (310)
T KOG4499|consen  241 TTGKILLEIKLPTP--QITSCCFGG  263 (310)
T ss_pred             CCCcEEEEEEcCCC--ceEEEEecC
Confidence            99998887776543  478888753

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=88.63  E-value=13  Score=35.46  Aligned_cols=28  Identities=21%  Similarity=0.412  Sum_probs=20.0

Q ss_pred             EEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          358 VLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       358 v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      +.++..-+..   ++|++.+.+|.|.+|++.
T Consensus       192 I~~v~~d~~r---~~ly~l~~~~~Iq~w~l~  219 (422)
T PF08801_consen  192 IVQVAVDPSR---RLLYTLTSDGSIQVWDLG  219 (422)
T ss_dssp             EEEEEEETTT---TEEEEEESSE-EEEEEE-
T ss_pred             eeeEEecCCc---CEEEEEeCCCcEEEEEEe
Confidence            6666554433   489999999999999996

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.53  E-value=23  Score=33.59  Aligned_cols=139  Identities=8%  Similarity=-0.001  Sum_probs=79.8

Q ss_pred             cEEEecCCCeEEEEECCC--CcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEE----ecCCc-
Q 016224          121 NCMYGEKCKFLHSWTVGD--GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI----NLGGE-  193 (393)
Q Consensus       121 ~~~~g~~dg~i~vwd~~~--~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~----~~~~~-  193 (393)
                      ..+++...|.+.-|-+..  ..-++..-...+++|.+|.||+|.+.||.--.|.+|.+.+....+.....    +.+.. 
T Consensus        35 kqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~  114 (657)
T KOG2377|consen   35 KQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNAN  114 (657)
T ss_pred             ceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcce
Confidence            344444455555555431  11223333345679999999999999999999999999998433322221    11221 


Q ss_pred             e-EEEEeCCCEEEEEcCCeEEEEECCC--CceeeecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEEeccC
Q 016224          194 V-GCMISEGPWIFIGVTNFVKAWNTQT--NTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKFNVT  259 (393)
Q Consensus       194 ~-~~~~~~~~~l~~~~~~~i~v~d~~~--~~~~~~~~~~~~v~~l~~~~~----~l~~~~~dg~I~vwd~~~~  259 (393)
                      + ..+..++.-++.-.+..+-+|....  ........+.-.|....|.++    +|+++-..+++.=+-++++
T Consensus       115 IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  115 ILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             eEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            2 3334455555555555555555443  333355667778888888887    4444435555544545443

>PLN02193 nitrile-specifier protein

Probab=87.84  E-value=28  Score=33.82  Aligned_cols=132  Identities=8%  Similarity=0.066  Sum_probs=64.2

Q ss_pred             eEEEEECCCCceeeecC---CCC----cEEEEEEeCCEEEEEeCC-----CcEEEEEeccCCccccCceee---cCceee
Q 016224          211 FVKAWNTQTNTDLSLSG---PVG----QVYAMAVGNDLLFAGTQD-----GAILAWKFNVTTNCFEPAASL---KGHSLA  275 (393)
Q Consensus       211 ~i~v~d~~~~~~~~~~~---~~~----~v~~l~~~~~~l~~~~~d-----g~I~vwd~~~~~~~~~~~~~~---~~~~~~  275 (393)
                      .+.+||+.+.+-..+..   ...    ....+.+...+++.|+.+     ..+.+||+.+.+  +..+...   ......
T Consensus       194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~--W~~l~~~~~~P~~R~~  271 (470)
T PLN02193        194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE--WKLLTPVEEGPTPRSF  271 (470)
T ss_pred             cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE--EEEcCcCCCCCCCccc
Confidence            47788888766443221   111    112223333466666654     347777776542  2222221   011111


Q ss_pred             EEEEEEcCCEEEEecCCC-----cEEEeeCCCcceeeEe-----ccCccceEEEEEcCCEEEEEeCC----CcEEEEEcC
Q 016224          276 VVSLVVGANKLYSGSMDN-----SIRVWNLETLQCIQTL-----TEHTSVVMSLLCWDQFLLSCSLD----KTIKVWFAT  341 (393)
Q Consensus       276 v~~l~~~~~~l~sg~~dg-----~i~iwd~~~~~~~~~~-----~~~~~~v~~l~~~~~~l~s~s~d----g~i~iwd~~  341 (393)
                      ......++.+++.|+.++     .+..||+.+.+-...-     .........+.+.+++++.++.+    ..+.+||+.
T Consensus       272 h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~  351 (470)
T PLN02193        272 HSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPV  351 (470)
T ss_pred             eEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECC
Confidence            122334555666676543     4677888765432110     01111122334457777777655    458899987


Q ss_pred             CCc
Q 016224          342 DSG  344 (393)
Q Consensus       342 ~~~  344 (393)
                      +.+
T Consensus       352 t~~  354 (470)
T PLN02193        352 QDK  354 (470)
T ss_pred             CCE
Confidence            543

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=87.36  E-value=12  Score=35.76  Aligned_cols=140  Identities=8%  Similarity=0.059  Sum_probs=78.8

Q ss_pred             CCCEEEEE--cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---------EEEEEeCCCcEEEEEeccCCccccCc--
Q 016224          200 EGPWIFIG--VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---------LLFAGTQDGAILAWKFNVTTNCFEPA--  266 (393)
Q Consensus       200 ~~~~l~~~--~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---------~l~~~~~dg~I~vwd~~~~~~~~~~~--  266 (393)
                      +..+|+..  ....++-.|++.++.+........| -+.|.|.         .-++|-.+..|.-.|.+.........  
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es  556 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES  556 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence            44455543  4457777788888877433333334 5566664         34566667777777766543211111  


Q ss_pred             eeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 016224          267 ASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFAT  341 (393)
Q Consensus       267 ~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~  341 (393)
                      ....+....-....-...++++++..|-|++||--..+....+.+-...|..+...  |+++++.+ ...+.+-|++
T Consensus       557 KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~  632 (776)
T COG5167         557 KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP  632 (776)
T ss_pred             hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence            01111111112223346799999999999999965444444555556666655554  66655544 3466666654

>PLN02153 epithiospecifier protein

Probab=87.31  E-value=24  Score=32.49  Aligned_cols=64  Identities=8%  Similarity=0.102  Sum_probs=32.4

Q ss_pred             EcCCEEEEecCC-----------CcEEEeeCCCcceee--Eec---cCccceEEEEEcCCEEEEEeCC------------
Q 016224          281 VGANKLYSGSMD-----------NSIRVWNLETLQCIQ--TLT---EHTSVVMSLLCWDQFLLSCSLD------------  332 (393)
Q Consensus       281 ~~~~~l~sg~~d-----------g~i~iwd~~~~~~~~--~~~---~~~~~v~~l~~~~~~l~s~s~d------------  332 (393)
                      .++.+++.|+.+           ..|.+||+.+.+-..  ...   ..........+.+++++.++.+            
T Consensus       136 ~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~  215 (341)
T PLN02153        136 DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYE  215 (341)
T ss_pred             ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCcccee
Confidence            345566666643           247788887644321  110   1111122334456655555432            


Q ss_pred             -CcEEEEEcCCCc
Q 016224          333 -KTIKVWFATDSG  344 (393)
Q Consensus       333 -g~i~iwd~~~~~  344 (393)
                       ..|.+||+.+.+
T Consensus       216 ~~~v~~yd~~~~~  228 (341)
T PLN02153        216 SNAVQFFDPASGK  228 (341)
T ss_pred             cCceEEEEcCCCc
Confidence             458888886543

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=86.64  E-value=5.1  Score=40.49  Aligned_cols=131  Identities=13%  Similarity=0.109  Sum_probs=75.4

Q ss_pred             cEEEecCCCeEEEEECCCC--cEEEE-EecCCcCCEEEEEecCCCCEEEEEeCCCcEEE--------EECCCCeEEEEEe
Q 016224          121 NCMYGEKCKFLHSWTVGDG--FKLLT-QLEGHQKVVSGITLPSGSDKLYSGSKDETVRV--------WDCASGQCAGVIN  189 (393)
Q Consensus       121 ~~~~g~~dg~i~vwd~~~~--~~~~~-~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~i--------wd~~~~~~~~~~~  189 (393)
                      .+.+|+.++.|.++.-..+  .+... ........+.++.+++.  .+..|.-||++-.        ||.+-..+  ...
T Consensus       549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~ep~~~--~~~  624 (925)
T KOG3522|consen  549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGEPNIS--IPT  624 (925)
T ss_pred             cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCCCccc--ccc
Confidence            4556888888888875522  12222 22233466777777654  2444555555544        44331111  112


Q ss_pred             cCCceEEEEeCCCEEEEEcCCeEEEEECCCCcee----eecCCCCcEEEEEEeCCEEEEEeCCC-cEEEEE
Q 016224          190 LGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL----SLSGPVGQVYAMAVGNDLLFAGTQDG-AILAWK  255 (393)
Q Consensus       190 ~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~----~~~~~~~~v~~l~~~~~~l~~~~~dg-~I~vwd  255 (393)
                      ...++........++.++.+|.|.++...+....    ....+...|++|.+..+-+..+-..| .++.++
T Consensus       625 g~lPvrsla~~ed~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfh  695 (925)
T KOG3522|consen  625 GSLPVRSLAFQEDFVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFH  695 (925)
T ss_pred             CCccccchhhhhceeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEec
Confidence            2234455556677888899999999998775443    34456778999999888333333333 444443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=86.29  E-value=31  Score=32.72  Aligned_cols=132  Identities=11%  Similarity=0.141  Sum_probs=65.7

Q ss_pred             CCeEEEEECCCCcEEEEEecCCc---CCEEEEEecCCCCEEEEEeC--------------------CCcEEEEECCCCeE
Q 016224          128 CKFLHSWTVGDGFKLLTQLEGHQ---KVVSGITLPSGSDKLYSGSK--------------------DETVRVWDCASGQC  184 (393)
Q Consensus       128 dg~i~vwd~~~~~~~~~~l~~h~---~~I~~i~~s~~~~~l~s~s~--------------------dg~v~iwd~~~~~~  184 (393)
                      -|-+.+.|-++- +.........   .--..+-+.|..+.++|...                    ..++.+||+.+.+.
T Consensus       156 ~Ggf~llD~~tf-~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~  234 (461)
T PF05694_consen  156 PGGFVLLDGETF-EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL  234 (461)
T ss_dssp             --EEEEE-TTT---EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred             CCcEEEEcCccc-cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence            345777776653 6666665432   33456677888888988764                    25899999999999


Q ss_pred             EEEEecCCceEE-----EE--eCCCEEEEE--cCCeEEEEEC-CCCce-----eeecC-----------------CCCcE
Q 016224          185 AGVINLGGEVGC-----MI--SEGPWIFIG--VTNFVKAWNT-QTNTD-----LSLSG-----------------PVGQV  232 (393)
Q Consensus       185 ~~~~~~~~~~~~-----~~--~~~~~l~~~--~~~~i~v~d~-~~~~~-----~~~~~-----------------~~~~v  232 (393)
                      ++++..+..-..     +.  ++...-+++  ...+|..|-- ..++-     +.+..                 ...-|
T Consensus       235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li  314 (461)
T PF05694_consen  235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI  314 (461)
T ss_dssp             EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred             eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence            999998754221     11  234444443  4445544433 33331     11111                 03457


Q ss_pred             EEEEEeCC---EEEEEeCCCcEEEEEeccCC
Q 016224          233 YAMAVGND---LLFAGTQDGAILAWKFNVTT  260 (393)
Q Consensus       233 ~~l~~~~~---~l~~~~~dg~I~vwd~~~~~  260 (393)
                      +.|.++-|   +.++.=.+|.|+.||+....
T Consensus       315 tDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  315 TDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             --EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             EeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence            88888877   44555579999999998754

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.27  E-value=53  Score=35.45  Aligned_cols=33  Identities=9%  Similarity=0.046  Sum_probs=27.4

Q ss_pred             cCccceEEEEEcC--CEEEEEeCCCcEEEEEcCCC
Q 016224          311 EHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDS  343 (393)
Q Consensus       311 ~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~  343 (393)
                      .+..+|..+..+.  +.+.+-+..++|.+||+...
T Consensus       240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             CCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence            5677899999884  47888899999999999763

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=86.25  E-value=32  Score=34.43  Aligned_cols=105  Identities=14%  Similarity=0.160  Sum_probs=62.4

Q ss_pred             CCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEec--CCceEEEE----eCCC-EEEEEcCCeEEEEECCCC---
Q 016224          151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL--GGEVGCMI----SEGP-WIFIGVTNFVKAWNTQTN---  220 (393)
Q Consensus       151 ~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~----~~~~-~l~~~~~~~i~v~d~~~~---  220 (393)
                      ...+-+.-+.-++.-++-+...++.|||...+.....-..  ...+..+.    ++++ ++++|..+.|.+|.-...   
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            4444454555444333334445899999998875544443  45554432    3444 566789999988864211   


Q ss_pred             ---------ceeeecCCC-CcEEEEEEeCC-EEEEEeCCCcEEEEEe
Q 016224          221 ---------TDLSLSGPV-GQVYAMAVGND-LLFAGTQDGAILAWKF  256 (393)
Q Consensus       221 ---------~~~~~~~~~-~~v~~l~~~~~-~l~~~~~dg~I~vwd~  256 (393)
                               +.+.+..+. .+|.+..|.++ .|++|+ +..+.|+|-
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK  155 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence                     112333443 57888899888 555554 567888764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.25  E-value=28  Score=32.25  Aligned_cols=56  Identities=14%  Similarity=0.119  Sum_probs=41.7

Q ss_pred             CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224          128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG  186 (393)
Q Consensus       128 dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  186 (393)
                      .+.+.|+|+.++ + +..+......+....|+|+|+.|+-.. ++.|.+++..+++..+
T Consensus        22 ~~~y~i~d~~~~-~-~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~   77 (353)
T PF00930_consen   22 KGDYYIYDIETG-E-ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ   77 (353)
T ss_dssp             EEEEEEEETTTT-E-EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred             ceeEEEEecCCC-c-eEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence            457899999987 3 334444467888999999999999886 5789999988775544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=86.06  E-value=25  Score=36.05  Aligned_cols=35  Identities=26%  Similarity=0.372  Sum_probs=27.0

Q ss_pred             CccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          355 EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       355 ~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      ...+..+.|+|.+..+..|+.-.+|+++|+||+..
T Consensus       146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence            34577788888876666788888888888888854

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=85.87  E-value=9.3  Score=32.74  Aligned_cols=28  Identities=18%  Similarity=0.360  Sum_probs=16.9

Q ss_pred             ecCCCCEEEEEeCCCcEEEEECCCCeEE
Q 016224          158 LPSGSDKLYSGSKDETVRVWDCASGQCA  185 (393)
Q Consensus       158 ~s~~~~~l~s~s~dg~v~iwd~~~~~~~  185 (393)
                      +..++++|+....+|.+++||+.+++.+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~   45 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAV   45 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence            3445666666666666666666665543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.75  E-value=15  Score=39.24  Aligned_cols=138  Identities=13%  Similarity=0.256  Sum_probs=85.9

Q ss_pred             cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEe--------cCCCCEEEEEeCCCcEEEEECCCCe-------EE
Q 016224          121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITL--------PSGSDKLYSGSKDETVRVWDCASGQ-------CA  185 (393)
Q Consensus       121 ~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~--------s~~~~~l~s~s~dg~v~iwd~~~~~-------~~  185 (393)
                      +.+--+.|+.+.+|+.+++ .....+.+-+..|..+.+        -|.=++|+..+.--.|.|+-+.-.+       ..
T Consensus        91 ~RaWiTiDn~L~lWny~~~-~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~  169 (1311)
T KOG1900|consen   91 GRAWITIDNNLFLWNYESD-NELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFN  169 (1311)
T ss_pred             cceEEEeCCeEEEEEcCCC-CccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccc
Confidence            4445778999999999986 566677777777777765        2222444444444456666432111       11


Q ss_pred             EEEe--c-CCceEEEE--eCCCEEEEEcCCeEEE--EECCCC-------c--------------eeeec-CCCCcEEEEE
Q 016224          186 GVIN--L-GGEVGCMI--SEGPWIFIGVTNFVKA--WNTQTN-------T--------------DLSLS-GPVGQVYAMA  236 (393)
Q Consensus       186 ~~~~--~-~~~~~~~~--~~~~~l~~~~~~~i~v--~d~~~~-------~--------------~~~~~-~~~~~v~~l~  236 (393)
                      ..+.  . +..+.++.  .+|+++++|.|+.|+-  |....+       +              ...+. .+.++|..|+
T Consensus       170 ~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~  249 (1311)
T KOG1900|consen  170 TSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT  249 (1311)
T ss_pred             cceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence            1122  1 23344444  4889999998885542  222211       0              11223 4577899999


Q ss_pred             EeCC--EEEEEeCCCcEEEEEeccC
Q 016224          237 VGND--LLFAGTQDGAILAWKFNVT  259 (393)
Q Consensus       237 ~~~~--~l~~~~~dg~I~vwd~~~~  259 (393)
                      ++..  .+.+-+..|+|.+||+...
T Consensus       250 ID~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  250 IDNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             eccccceeeeeccCceEEEEEccCC
Confidence            9876  8899999999999999873

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=85.68  E-value=31  Score=32.27  Aligned_cols=38  Identities=13%  Similarity=0.094  Sum_probs=20.6

Q ss_pred             CeEEEEECCCCceeeecCCC---CcEEEEEEeCC-EEEEEeC
Q 016224          210 NFVKAWNTQTNTDLSLSGPV---GQVYAMAVGND-LLFAGTQ  247 (393)
Q Consensus       210 ~~i~v~d~~~~~~~~~~~~~---~~v~~l~~~~~-~l~~~~~  247 (393)
                      ..+.+||..+++-..+....   ..-.++....+ +++.|+.
T Consensus       189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~  230 (376)
T PRK14131        189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGE  230 (376)
T ss_pred             ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeee
Confidence            35889999887765332211   12234444445 5556553

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=85.53  E-value=38  Score=33.16  Aligned_cols=224  Identities=13%  Similarity=0.104  Sum_probs=115.7

Q ss_pred             CcEEEecCCCeEEEEECCCCcE--EEEEecCC-cCCEEEEEecCCC-CEEEEEeC--CCcEEEEECCCCeEEEEEecCCc
Q 016224          120 GNCMYGEKCKFLHSWTVGDGFK--LLTQLEGH-QKVVSGITLPSGS-DKLYSGSK--DETVRVWDCASGQCAGVINLGGE  193 (393)
Q Consensus       120 ~~~~~g~~dg~i~vwd~~~~~~--~~~~l~~h-~~~I~~i~~s~~~-~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~  193 (393)
                      +.++.+..+|.++...+.....  .+..+ +. ....+++.+-.++ .+|+.|+.  |+.+.-|....-+.+..+..-++
T Consensus       223 ~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N~~P  301 (504)
T PF10433_consen  223 DRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPNWGP  301 (504)
T ss_dssp             SEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE----S
T ss_pred             CEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccCcCC
Confidence            3577899999999887764311  12222 22 4555667765544 47777776  45566666555566666666566


Q ss_pred             eEEEEe------CC-------CEEEEE---cCCeEEEEECCCCc---eeeecCC--CCcEEEEEEeC--C-EEEEEeCCC
Q 016224          194 VGCMIS------EG-------PWIFIG---VTNFVKAWNTQTNT---DLSLSGP--VGQVYAMAVGN--D-LLFAGTQDG  249 (393)
Q Consensus       194 ~~~~~~------~~-------~~l~~~---~~~~i~v~d~~~~~---~~~~~~~--~~~v~~l~~~~--~-~l~~~~~dg  249 (393)
                      +..+.-      ..       ++++++   .+|.+++..-.-+-   .......  ...++.+....  + +|+.+..+.
T Consensus       302 i~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~  381 (504)
T PF10433_consen  302 IVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNE  381 (504)
T ss_dssp             EEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSE
T ss_pred             ccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCCc
Confidence            544431      11       444543   56688876432221   2211111  44555565543  3 666655544


Q ss_pred             cEEEEEecc--CCccc-cC-ceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEecc-CccceEEEEEcCC
Q 016224          250 AILAWKFNV--TTNCF-EP-AASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCWDQ  324 (393)
Q Consensus       250 ~I~vwd~~~--~~~~~-~~-~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~  324 (393)
                       -+++.+..  ..... +. ...+......+.+-...+++++=.+.. .|++.+....+....+.. ....|.+.+..+.
T Consensus       382 -T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~~~  459 (504)
T PF10433_consen  382 -TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVAASINDP  459 (504)
T ss_dssp             -EEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SEEEESSS
T ss_pred             -eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEEEEECCC
Confidence             44555541  11100 00 002222333444444445666655544 488898888777776643 4456677777788


Q ss_pred             EEEEEeCCCcEEEEEcCCCcce
Q 016224          325 FLLSCSLDKTIKVWFATDSGNL  346 (393)
Q Consensus       325 ~l~s~s~dg~i~iwd~~~~~~~  346 (393)
                      +++.+-.++.+.++.+......
T Consensus       460 ~v~v~~~~~~~~~~~~~~~~~~  481 (504)
T PF10433_consen  460 QVLVALSGGELVYFELDDNKIS  481 (504)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEE
T ss_pred             EEEEEEeCCcEEEEEEECCcee
Confidence            8888888999999988765543

...

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.52  E-value=29  Score=30.84  Aligned_cols=86  Identities=12%  Similarity=0.117  Sum_probs=56.5

Q ss_pred             EEEecCCC-CEEEEEeCCCc-EEEEECCCCeEEEEEecCCc-----eEEEEeCCCEEEEEc------CCeEEEEECCCCc
Q 016224          155 GITLPSGS-DKLYSGSKDET-VRVWDCASGQCAGVINLGGE-----VGCMISEGPWIFIGV------TNFVKAWNTQTNT  221 (393)
Q Consensus       155 ~i~~s~~~-~~l~s~s~dg~-v~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~------~~~i~v~d~~~~~  221 (393)
                      .|+|+|.. .-++.+-.-|+ ..++|....+...++.....     -.++.+++.+|.+..      .|.|-+||.+.+-
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f  151 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF  151 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence            46777754 34555555454 56889888877766654432     245668999999862      3589999998554


Q ss_pred             ee--eecCCCCcEEEEEEeCC
Q 016224          222 DL--SLSGPVGQVYAMAVGND  240 (393)
Q Consensus       222 ~~--~~~~~~~~v~~l~~~~~  240 (393)
                      ..  .+..|.--...+.+.+|
T Consensus       152 qrvgE~~t~GiGpHev~lm~D  172 (366)
T COG3490         152 QRVGEFSTHGIGPHEVTLMAD  172 (366)
T ss_pred             ceecccccCCcCcceeEEecC
Confidence            33  55666666667777777

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=84.49  E-value=32  Score=31.35  Aligned_cols=64  Identities=9%  Similarity=0.051  Sum_probs=34.4

Q ss_pred             EEcCCEEEEecC-----CCcEEEeeCCCcce--eeEecc-CccceEEEEEcCCEEEEEeCCCc----EEEEEcCCC
Q 016224          280 VVGANKLYSGSM-----DNSIRVWNLETLQC--IQTLTE-HTSVVMSLLCWDQFLLSCSLDKT----IKVWFATDS  343 (393)
Q Consensus       280 ~~~~~~l~sg~~-----dg~i~iwd~~~~~~--~~~~~~-~~~~v~~l~~~~~~l~s~s~dg~----i~iwd~~~~  343 (393)
                      ..++.+.+.|+.     ...+..||+.+.+-  +..+.. .......+...+++.+.|+.++.    +.+||+.+.
T Consensus       121 ~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~  196 (323)
T TIGR03548       121 YKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN  196 (323)
T ss_pred             EECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence            345666666664     24688889876543  222221 11112233445677777776543    567887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=84.20  E-value=26  Score=32.68  Aligned_cols=133  Identities=11%  Similarity=0.118  Sum_probs=62.7

Q ss_pred             ecCCCe-EEEEECCCCcEEEEEecCCc--CCEEEEEecCCCCEEEEEe-----CCCcEEEEECCCCeEEEEEecCCceEE
Q 016224          125 GEKCKF-LHSWTVGDGFKLLTQLEGHQ--KVVSGITLPSGSDKLYSGS-----KDETVRVWDCASGQCAGVINLGGEVGC  196 (393)
Q Consensus       125 g~~dg~-i~vwd~~~~~~~~~~l~~h~--~~I~~i~~s~~~~~l~s~s-----~dg~v~iwd~~~~~~~~~~~~~~~~~~  196 (393)
                      |--+.. -+||-+.+.-.-.+.+..|.  ..+..=-|.+||..|.--+     .+..|.-+|+.+++.......+.....
T Consensus       209 Gpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~  288 (386)
T PF14583_consen  209 GPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHF  288 (386)
T ss_dssp             S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEE
T ss_pred             CCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeee
Confidence            444442 47776653323444444443  3344445789998766432     245677788888876655555544433


Q ss_pred             EE-eCCCEEEEE-cCC----------------eEEEEECCCCceeeecCCCC-----------cEEEEEEeCC---EEEE
Q 016224          197 MI-SEGPWIFIG-VTN----------------FVKAWNTQTNTDLSLSGPVG-----------QVYAMAVGND---LLFA  244 (393)
Q Consensus       197 ~~-~~~~~l~~~-~~~----------------~i~v~d~~~~~~~~~~~~~~-----------~v~~l~~~~~---~l~~  244 (393)
                      .. .++++++.. .|.                .|++++++.+....+..|..           .-....|+||   .|++
T Consensus       289 ~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~  368 (386)
T PF14583_consen  289 MSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFR  368 (386)
T ss_dssp             EE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEE
T ss_pred             EEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEE
Confidence            33 466666552 321                46678888776543333321           1245778888   7888


Q ss_pred             EeCCCcEEEEEec
Q 016224          245 GTQDGAILAWKFN  257 (393)
Q Consensus       245 ~~~dg~I~vwd~~  257 (393)
                      +...|...||=+.
T Consensus       369 Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  369 SDMEGPPAVYLVE  381 (386)
T ss_dssp             E-TTSS-EEEEEE
T ss_pred             CCCCCCccEEEEe
Confidence            8888888777544

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=83.70  E-value=41  Score=31.98  Aligned_cols=135  Identities=13%  Similarity=0.158  Sum_probs=81.8

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCe-----EEEEEecCCceEEEEe-------CCCEEEEEcCCeEEEEECCCCc-------
Q 016224          161 GSDKLYSGSKDETVRVWDCASGQ-----CAGVINLGGEVGCMIS-------EGPWIFIGVTNFVKAWNTQTNT-------  221 (393)
Q Consensus       161 ~~~~l~s~s~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~i~v~d~~~~~-------  221 (393)
                      +...|++||..|.++||+.....     .+-+.+...++..+..       ....|++-.-..+.+|.+....       
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            45789999999999999986543     4555566666655432       3456777788888888873211       


Q ss_pred             ee---eecCCC--CcEEEEEEe-------CCEEEEEeCCCcEEEEEeccCCccccCceeec--CceeeEEEEEEcCCEEE
Q 016224          222 DL---SLSGPV--GQVYAMAVG-------NDLLFAGTQDGAILAWKFNVTTNCFEPAASLK--GHSLAVVSLVVGANKLY  287 (393)
Q Consensus       222 ~~---~~~~~~--~~v~~l~~~-------~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~l~  287 (393)
                      ..   .+..|.  .....++..       .+++.+-+-||.+.+|+-+.-..    ...+.  -..+++ +....-+.|+
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f----~~~lp~~llPgPl-~Y~~~tDsfv  190 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF----SRFLPDFLLPGPL-CYCPRTDSFV  190 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE----EEEcCCCCCCcCe-EEeecCCEEE
Confidence            11   222222  223333332       24899999999999998655321    11111  122332 3334456788


Q ss_pred             EecCCCcEEEeeC
Q 016224          288 SGSMDNSIRVWNL  300 (393)
Q Consensus       288 sg~~dg~i~iwd~  300 (393)
                      +++.+..|.-|..
T Consensus       191 t~sss~~l~~Yky  203 (418)
T PF14727_consen  191 TASSSWTLECYKY  203 (418)
T ss_pred             EecCceeEEEecH
Confidence            8888888887765

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=83.40  E-value=37  Score=31.25  Aligned_cols=83  Identities=16%  Similarity=0.145  Sum_probs=39.8

Q ss_pred             CeEEEEECCCCceeeecCCC---CcEEEEEE-eCCEEEEEeCC------CcEEEEEeccCCccccCceeecC-----ce-
Q 016224          210 NFVKAWNTQTNTDLSLSGPV---GQVYAMAV-GNDLLFAGTQD------GAILAWKFNVTTNCFEPAASLKG-----HS-  273 (393)
Q Consensus       210 ~~i~v~d~~~~~~~~~~~~~---~~v~~l~~-~~~~l~~~~~d------g~I~vwd~~~~~~~~~~~~~~~~-----~~-  273 (393)
                      +.+.+||..+++-..+....   ..-.+++. ...+++.|+.+      ..+.++++......+.....+..     +. 
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~  247 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEG  247 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcccc
Confidence            46889999887655332211   12223333 33466666543      12455666444333333333221     11 


Q ss_pred             -eeEEEEEEcCCEEEEecCC
Q 016224          274 -LAVVSLVVGANKLYSGSMD  292 (393)
Q Consensus       274 -~~v~~l~~~~~~l~sg~~d  292 (393)
                       ........++..++.|+.+
T Consensus       248 ~~~~~a~~~~~~Iyv~GG~~  267 (346)
T TIGR03547       248 LAGAFAGISNGVLLVAGGAN  267 (346)
T ss_pred             ccEEeeeEECCEEEEeecCC
Confidence             1222344566677777653

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=83.23  E-value=40  Score=31.50  Aligned_cols=140  Identities=15%  Similarity=0.130  Sum_probs=72.5

Q ss_pred             CcEEEEEeccCCccccCce----eecCceeeEEEEEE--c---CC-EEEEecCCCcEEEeeCC---Cc----ceeeEecc
Q 016224          249 GAILAWKFNVTTNCFEPAA----SLKGHSLAVVSLVV--G---AN-KLYSGSMDNSIRVWNLE---TL----QCIQTLTE  311 (393)
Q Consensus       249 g~I~vwd~~~~~~~~~~~~----~~~~~~~~v~~l~~--~---~~-~l~sg~~dg~i~iwd~~---~~----~~~~~~~~  311 (393)
                      .+|++|.+......+..+.    .+......++.++.  +   +. +++....+|.+..|-+.   .+    +++++|..
T Consensus       127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~  206 (381)
T PF02333_consen  127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV  206 (381)
T ss_dssp             -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred             CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence            4699998874322111111    01111123455554  2   33 57777888988888764   23    45777764


Q ss_pred             CccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCc--ceEEEEe---ecCCccEEEEEeeeCCCCCcEEEE-EeCCCeEE
Q 016224          312 HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSG--NLEVTYT---HNEEHGVLALCGMPDSEGKPVLLC-SCNDNSVR  383 (393)
Q Consensus       312 ~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~---~~~~~~v~~~~~~~~~~~~~~l~s-~s~dg~I~  383 (393)
                      .. .+-.+..+  ..+|+.+-++--|.-|+.....  ....+..   ..-...+-.++.-....+.-||+. .-.+++..
T Consensus       207 ~s-Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~  285 (381)
T PF02333_consen  207 GS-QPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFA  285 (381)
T ss_dssp             SS--EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEE
T ss_pred             CC-cceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEE
Confidence            33 66677777  4589999998878777775322  1122211   111123555555443333335554 44588999


Q ss_pred             EEeCCc
Q 016224          384 FYDLPS  389 (393)
Q Consensus       384 iwd~~s  389 (393)
                      ||+...
T Consensus       286 Vy~r~~  291 (381)
T PF02333_consen  286 VYDREG  291 (381)
T ss_dssp             EEESST
T ss_pred             EEecCC
Confidence            999753

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=83.22  E-value=27  Score=29.58  Aligned_cols=50  Identities=10%  Similarity=0.074  Sum_probs=39.6

Q ss_pred             CcEEEecCCCeEEEEECC-CCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC
Q 016224          120 GNCMYGEKCKFLHSWTVG-DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK  170 (393)
Q Consensus       120 ~~~~~g~~dg~i~vwd~~-~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~  170 (393)
                      +.++.+.....|.+|++. +..+++.++.- -+.|..|.++..|+||+|-=.
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~   79 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEE   79 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEe
Confidence            677777888899999998 34466667763 388999999999999998643

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.08  E-value=45  Score=32.29  Aligned_cols=93  Identities=13%  Similarity=0.081  Sum_probs=55.6

Q ss_pred             eEEEEEE--cCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc-CCEEEEEeCCCcEEEEEcCCCcceEEEEe
Q 016224          275 AVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYT  351 (393)
Q Consensus       275 ~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  351 (393)
                      .|..+..  .|..++..+.+|.+.++=.+..-.-..++.....|+|-.+. +..|++                       
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ft-----------------------  161 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFT-----------------------  161 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeec-----------------------
Confidence            3444444  36678888888877766544433344444444444444333 222222                       


Q ss_pred             ecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          352 HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       352 ~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      ......+....|+|++-....|..-++|++||+|++.+-
T Consensus       162 ss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  162 SSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP  200 (741)
T ss_pred             cCCceeeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence            223344667888888744457888888999999998754

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=83.03  E-value=15  Score=31.01  Aligned_cols=116  Identities=10%  Similarity=0.050  Sum_probs=63.9

Q ss_pred             EEEEeCC-EEEEEeC--CCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEE-ecCCCcEEEeeCCCcceeeEe
Q 016224          234 AMAVGND-LLFAGTQ--DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYS-GSMDNSIRVWNLETLQCIQTL  309 (393)
Q Consensus       234 ~l~~~~~-~l~~~~~--dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s-g~~dg~i~iwd~~~~~~~~~~  309 (393)
                      .+.+..+ ++.+.+.  ...|++||+.+++..+..  .+......--.+.--+++++. .-.+|.-..+|.++.+++..+
T Consensus        50 GL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~--~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~  127 (262)
T COG3823          50 GLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSE--KLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRF  127 (262)
T ss_pred             ceeeeCCEEEEeccccccceeEEEeccCceEEEEe--ecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccc
Confidence            3444444 3444333  345888888876432111  111000000111222343333 335788889999998888777


Q ss_pred             ccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEee
Q 016224          310 TEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTH  352 (393)
Q Consensus       310 ~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  352 (393)
                      . -.+.-..++.++..|+.+....+++.-|.++......+...
T Consensus       128 ~-y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT  169 (262)
T COG3823         128 S-YEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVT  169 (262)
T ss_pred             c-cCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEE
Confidence            5 34455777777777777777777888777665544444433

>smart00564 PQQ beta-propeller repeat

Probab=82.94  E-value=3.9  Score=22.59  Aligned_cols=27  Identities=22%  Similarity=0.341  Sum_probs=20.1

Q ss_pred             CCEEEEecCCCcEEEeeCCCcceeeEe
Q 016224          283 ANKLYSGSMDNSIRVWNLETLQCIQTL  309 (393)
Q Consensus       283 ~~~l~sg~~dg~i~iwd~~~~~~~~~~  309 (393)
                      +..++.++.++.+..+|.++|+.+.++
T Consensus         6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        6 DGTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            446777788888888888888776543

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PRK10115 protease 2; Provisional

Probab=82.65  E-value=61  Score=33.23  Aligned_cols=238  Identities=9%  Similarity=0.013  Sum_probs=110.3

Q ss_pred             CCEEEEEecCCCCEEEEEeC-C----CcEEEEECCCCeEEEE-EecCCceEEEEeCCCEEEEE-cC------CeEEEEEC
Q 016224          151 KVVSGITLPSGSDKLYSGSK-D----ETVRVWDCASGQCAGV-INLGGEVGCMISEGPWIFIG-VT------NFVKAWNT  217 (393)
Q Consensus       151 ~~I~~i~~s~~~~~l~s~s~-d----g~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-~~------~~i~v~d~  217 (393)
                      -.+..+.++||+++|+-+.. +    -.|++-|+.+++.+.. +........+..+++.++.. .+      ..|..+++
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l  206 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI  206 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence            45777889999998876533 2    3688999988863322 22222234555677655543 21      26788888


Q ss_pred             CCCc--ee-eecCCCCcEE-EEEEeCC--EEEEEe---CCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEE
Q 016224          218 QTNT--DL-SLSGPVGQVY-AMAVGND--LLFAGT---QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYS  288 (393)
Q Consensus       218 ~~~~--~~-~~~~~~~~v~-~l~~~~~--~l~~~~---~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s  288 (393)
                      .++.  .. .+........ .+..+.+  +++..+   .++.+.+++......  .....+.........+...++.|+.
T Consensus       207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ly~  284 (686)
T PRK10115        207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA--EPFVFLPRRKDHEYSLDHYQHRFYL  284 (686)
T ss_pred             CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC--CceEEEECCCCCEEEEEeCCCEEEE
Confidence            8772  22 2332222222 2222323  333322   345688888543221  1111111111112222222343333


Q ss_pred             ecC----CCcEEEeeCCCcceeeEeccC-c-cceEEEEEcCCE-EEEEeCCCcEEEEEcCC-CcceEEEEeecCCccEEE
Q 016224          289 GSM----DNSIRVWNLETLQCIQTLTEH-T-SVVMSLLCWDQF-LLSCSLDKTIKVWFATD-SGNLEVTYTHNEEHGVLA  360 (393)
Q Consensus       289 g~~----dg~i~iwd~~~~~~~~~~~~~-~-~~v~~l~~~~~~-l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~  360 (393)
                      -+.    ...|...++........+..+ . ..+..+.+.+++ +++...++.-+++-+.. ...+..+.. .....+..
T Consensus       285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~-~~~~~~~~  363 (686)
T PRK10115        285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAF-DDPAYVTW  363 (686)
T ss_pred             EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCCceEEecC-CCCceEee
Confidence            222    223444455421222334344 2 367778777665 45556677655554432 222332221 11111222


Q ss_pred             EEeeeCCCCCcEEEEEeC---CCeEEEEeCCcee
Q 016224          361 LCGMPDSEGKPVLLCSCN---DNSVRFYDLPSVI  391 (393)
Q Consensus       361 ~~~~~~~~~~~~l~s~s~---dg~I~iwd~~s~~  391 (393)
                      +...++..+..++++.++   -+.+..+|+.+++
T Consensus       364 ~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        364 IAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             ecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            223322222334444433   4667777776543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=82.59  E-value=7.6  Score=22.74  Aligned_cols=33  Identities=33%  Similarity=0.507  Sum_probs=23.4

Q ss_pred             CCCCEEEEEe-CCCcEEEEECCCCeEEEEEecCC
Q 016224          160 SGSDKLYSGS-KDETVRVWDCASGQCAGVINLGG  192 (393)
Q Consensus       160 ~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~  192 (393)
                      |++++|+++. .+++|.++|..+++.+..+....
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~   34 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG   34 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC
Confidence            4666666554 47788999988888777776543

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.31  E-value=21  Score=35.99  Aligned_cols=49  Identities=14%  Similarity=0.226  Sum_probs=34.6

Q ss_pred             eEEEEECCCCceeeecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccC
Q 016224          211 FVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVT  259 (393)
Q Consensus       211 ~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~  259 (393)
                      .|+||+......-.+......+..+.|+.+ .|++...+|++++|++...
T Consensus        65 ~I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge  114 (829)
T KOG2280|consen   65 YIRIFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGE  114 (829)
T ss_pred             eEEEEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchh
Confidence            355555544333333334448889999988 8888999999999998754

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=82.06  E-value=39  Score=30.56  Aligned_cols=110  Identities=12%  Similarity=0.113  Sum_probs=53.8

Q ss_pred             CCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccc-cCceeecCceeeEEEEEEc-CCEEEEecCCCcEEEeeCCCcc
Q 016224          228 PVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCF-EPAASLKGHSLAVVSLVVG-ANKLYSGSMDNSIRVWNLETLQ  304 (393)
Q Consensus       228 ~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~-~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~iwd~~~~~  304 (393)
                      ....|.+|.|.++ .|......|.|+.=+.......+ +.........-.+..+++. ++.+.+++..|.+. .....|+
T Consensus       185 ~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGk  263 (302)
T PF14870_consen  185 SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGK  263 (302)
T ss_dssp             SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE-EESSTTS
T ss_pred             ccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE-EeCCCCc
Confidence            4578999999998 55556688888887622221111 1111222234457888886 34555555566544 3334444


Q ss_pred             eeeEe---ccCccceEEEEEc-CCEEEEEeCCCcEEEE
Q 016224          305 CIQTL---TEHTSVVMSLLCW-DQFLLSCSLDKTIKVW  338 (393)
Q Consensus       305 ~~~~~---~~~~~~v~~l~~~-~~~l~s~s~dg~i~iw  338 (393)
                      -=+..   ..-......+.|. ++.-.+.+.+|.|.-|
T Consensus       264 tW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  264 TWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             S-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred             cceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence            32222   2233456777776 5666667788877554

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=81.95  E-value=38  Score=30.30  Aligned_cols=57  Identities=14%  Similarity=0.251  Sum_probs=42.3

Q ss_pred             CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe------CCCcEEEEECCCCeE
Q 016224          127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS------KDETVRVWDCASGQC  184 (393)
Q Consensus       127 ~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s------~dg~v~iwd~~~~~~  184 (393)
                      .+..|.+||..+. +-...-.+-.+.|++|.|..+.++++.|.      ....+..||..+..-
T Consensus        14 ~C~~lC~yd~~~~-qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w   76 (281)
T PF12768_consen   14 PCPGLCLYDTDNS-QWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW   76 (281)
T ss_pred             CCCEEEEEECCCC-EeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence            5778999998876 55544455678999999987777777764      356788899877643

>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]

Probab=81.70  E-value=31  Score=32.34  Aligned_cols=31  Identities=13%  Similarity=0.281  Sum_probs=22.6

Q ss_pred             cEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          357 GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       357 ~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      .+..++    ..+++++++-+.+..|.+|.+.+..
T Consensus       432 ~i~~ls----~gGdRlfv~rs~~~~v~vw~~~~~~  462 (465)
T KOG2714|consen  432 LIVRLS----SGGDRLFVVRSVESPVTVWEVLECE  462 (465)
T ss_pred             cEEEEe----cCCeeEEEEEeccCceeEEEecCCC
Confidence            355554    3355688888889999999988754

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=81.12  E-value=51  Score=32.46  Aligned_cols=141  Identities=13%  Similarity=0.169  Sum_probs=77.6

Q ss_pred             ceEEeeEecCcEEE-ec---CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCC----CCEEEEEeCCCcEEEEECCC-
Q 016224          111 DILCRNWVQGNCMY-GE---KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG----SDKLYSGSKDETVRVWDCAS-  181 (393)
Q Consensus       111 ~i~c~~~~~~~~~~-g~---~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~----~~~l~s~s~dg~v~iwd~~~-  181 (393)
                      ++.-++|-+++.+. ..   ..|.++.=   +. +.+..|    ..|..+.|.|-    ...|++......|.||.+.- 
T Consensus        21 PvhGlaWTDGkqVvLT~L~l~~gE~kfG---ds-~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   21 PVHGLAWTDGKQVVLTDLQLHNGEPKFG---DS-KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS   92 (671)
T ss_pred             cccceEecCCCEEEEEeeeeeCCccccC---Cc-cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence            77788888775442 11   12222221   11 334333    46889999874    44677777888999998752 


Q ss_pred             ----CeEE--EEEecCCc-----eEEE-EeCCCEEEEEcCC-eEEEEECCCCc--eeeecCCCCcEEEEEEeCC---EEE
Q 016224          182 ----GQCA--GVINLGGE-----VGCM-ISEGPWIFIGVTN-FVKAWNTQTNT--DLSLSGPVGQVYAMAVGND---LLF  243 (393)
Q Consensus       182 ----~~~~--~~~~~~~~-----~~~~-~~~~~~l~~~~~~-~i~v~d~~~~~--~~~~~~~~~~v~~l~~~~~---~l~  243 (393)
                          ++.+  ++-+..++     -.|+ .+...+|++-... .-.+++++...  ...-....+.|.|.+|..|   +++
T Consensus        93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVV  172 (671)
T PF15390_consen   93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVV  172 (671)
T ss_pred             ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEE
Confidence                2221  22222221     1333 3566666664333 33344554332  2223356788999999887   444


Q ss_pred             EEeCCCcEEEEEeccC
Q 016224          244 AGTQDGAILAWKFNVT  259 (393)
Q Consensus       244 ~~~~dg~I~vwd~~~~  259 (393)
                      +.+..=.-++||-...
T Consensus       173 AvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  173 AVGSSLHSYIWDSAQK  188 (671)
T ss_pred             EeCCeEEEEEecCchh
Confidence            4444555678876544

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=81.06  E-value=6.8  Score=23.65  Aligned_cols=32  Identities=22%  Similarity=0.210  Sum_probs=25.4

Q ss_pred             EEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          358 VLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       358 v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      +.++.|+|.+....+|+.+-.-|.|.|+|+++
T Consensus         3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             eEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            67889997654334888888889999999984

It contains a characteristic DLL sequence motif.

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=81.06  E-value=54  Score=35.10  Aligned_cols=137  Identities=15%  Similarity=0.127  Sum_probs=84.1

Q ss_pred             CEEEEEeC---------CCcEEEEECCC-----Ce-----EEEE---EecCCceEEEEeCCCEEEEEcCCeEEEEECCC-
Q 016224          163 DKLYSGSK---------DETVRVWDCAS-----GQ-----CAGV---INLGGEVGCMISEGPWIFIGVTNFVKAWNTQT-  219 (393)
Q Consensus       163 ~~l~s~s~---------dg~v~iwd~~~-----~~-----~~~~---~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~-  219 (393)
                      .+|+.|..         -|.+.|+|+-+     ++     .++.   -+..+.+..+..-..+++.+....|.+|+++. 
T Consensus      1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~GqKI~v~~l~r~ 1126 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQGQKIIVRKLDRD 1126 (1366)
T ss_pred             ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEccCcEEEEEEeccC
Confidence            57887743         48999999732     21     1222   23446667777777788888888999999944 


Q ss_pred             Ccee--eecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEE--cCC--EEEEecCCC
Q 016224          220 NTDL--SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GAN--KLYSGSMDN  293 (393)
Q Consensus       220 ~~~~--~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~--~l~sg~~dg  293 (393)
                      ...+  .+....-.|.++..-.++|+.|..-..|.+.-+........++.. ....-.++++.|  +|.  .++++..|+
T Consensus      1127 ~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~sr-d~~~l~v~s~EFLVdg~~L~flvsDa~r 1205 (1366)
T KOG1896|consen 1127 SELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSR-DFEPLNVYSTEFLVDGSNLSFLVSDADR 1205 (1366)
T ss_pred             CcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeec-CCchhhceeeeeEEcCCeeEEEEEcCCC
Confidence            4433  444444555555555668888888888888776654221111111 112233444444  444  588999999


Q ss_pred             cEEEeeC
Q 016224          294 SIRVWNL  300 (393)
Q Consensus       294 ~i~iwd~  300 (393)
                      .|+++-.
T Consensus      1206 Ni~vy~Y 1212 (1366)
T KOG1896|consen 1206 NIHVYMY 1212 (1366)
T ss_pred             cEEEEEe
Confidence            9998754

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=80.48  E-value=4.9  Score=23.59  Aligned_cols=24  Identities=13%  Similarity=-0.141  Sum_probs=15.4

Q ss_pred             EEEEcCCEEEEEeCCCcEEEEEcC
Q 016224          318 SLLCWDQFLLSCSLDKTIKVWFAT  341 (393)
Q Consensus       318 ~l~~~~~~l~s~s~dg~i~iwd~~  341 (393)
                      ++...+..++.++.||.|..+|.+
T Consensus        16 ~~~v~~g~vyv~~~dg~l~ald~~   39 (40)
T PF13570_consen   16 SPAVAGGRVYVGTGDGNLYALDAA   39 (40)
T ss_dssp             --EECTSEEEEE-TTSEEEEEETT
T ss_pred             CCEEECCEEEEEcCCCEEEEEeCC
Confidence            345567777777788888877764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	393
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-17
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-13
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-13
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-13
2h9l_A	329	Wdr5delta23 Length = 329		3e-13
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-13
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-13
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-13
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-13
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-13
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-13
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-13
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-13
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-13
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		4e-13
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		5e-13
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		9e-13
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-12
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		5e-12
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		4e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-12
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-12
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-11
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-11
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-05
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-10
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-05
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-09
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-08
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-08
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-08
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-08
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-08
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-08
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-08
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		4e-08
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-08
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-07
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-06
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		3e-05
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		7e-05
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		8e-04

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 135/329 (41%), Gaps = 50/329 (15%)
Query: 101 NINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGIT-LP 159
           +I  R VIK   +   W      Y  + +   +W  G+  K    L+GH   V  IT L 
Sbjct: 73  HIKRRKVIKPGFIHSPW---KSAYIRQHRIDTNWRRGE-LKSPKVLKGHDDHV--ITCLQ 126
Query: 160 SGSDKLYSGSKDETVRVWDCASGQCAGVI--NLGGEVGCMISEGPWIFIGVTNFVKAWNT 217
              +++ SGS D T++VW   +G+C   +  + GG     + +   I       +K WN 
Sbjct: 127 FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNA 186
Query: 218 QTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWK--------------------- 255
           +T   + +L G    V  M +    + +G++D  +  W                      
Sbjct: 187 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ 246
Query: 256 ----------FNVTTNCFEPAA-----SLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNL 300
                     ++     ++P       +L+GH+  V SL      + SGS+D SIRVW++
Sbjct: 247 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV 306
Query: 301 ETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLA 360
           ET  CI TLT H S+   +   D  L+S + D T+K+W       L+     N+    + 
Sbjct: 307 ETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 366
Query: 361 LCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
                    K  ++ S +D +V+ +DL +
Sbjct: 367 CLQF----NKNFVITSSDDGTVKLWDLKT 391

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K L  W V  G K L  L+GH   V        S+ + SGS DE+VR+WD  +G+C   +
Sbjct: 83  KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 141
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
               +    +    +G  I     +   + W+T +     T +    P       +    
Sbjct: 142 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 201
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
            + A T D  +  W ++    C +     K     + +   V G   + SGS DN + +W
Sbjct: 202 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 260
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
           NL+T + +Q L  HT VV+S  C   +  + S +L  DKTIK+W
Sbjct: 261 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K L  W V  G K L  L+GH   V        S+ + SGS DE+VR+WD  +G+C   +
Sbjct: 93  KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
               +    +    +G  I     +   + W+T +     T +    P       +    
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
            + A T D  +  W ++    C +     K     + +   V G   + SGS DN + +W
Sbjct: 212 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
           NL+T + +Q L  HT VV+S  C   +  + S +L  DKTIK+W
Sbjct: 271 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K L  W V  G K L  L+GH   V        S+ + SGS DE+VR+WD  +G+C   +
Sbjct: 109 KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 167
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
               +    +    +G  I     +   + W+T +     T +    P       +    
Sbjct: 168 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 227
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
            + A T D  +  W ++    C +     K     + +   V G   + SGS DN + +W
Sbjct: 228 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
           NL+T + +Q L  HT VV+S  C   +  + S +L  DKTIK+W
Sbjct: 287 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K L  W V  G K L  L+GH   V        S+ + SGS DE+VR+WD  +G+C   +
Sbjct: 104 KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 162
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
               +    +    +G  I     +   + W+T +     T +    P       +    
Sbjct: 163 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 222
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
            + A T D  +  W ++    C +     K     + +   V G   + SGS DN + +W
Sbjct: 223 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 281
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
           NL+T + +Q L  HT VV+S  C   +  + S +L  DKTIK+W
Sbjct: 282 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K L  W V  G K L  L+GH   V        S+ + SGS DE+VR+WD  +G+C   +
Sbjct: 87  KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
               +    +    +G  I     +   + W+T +     T +    P       +    
Sbjct: 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 205
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
            + A T D  +  W ++    C +     K     + +   V G   + SGS DN + +W
Sbjct: 206 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
           NL+T + +Q L  HT VV+S  C   +  + S +L  DKTIK+W
Sbjct: 265 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K L  W V  G K L  L+GH   V        S+ + SGS DE+VR+WD  +G+C   +
Sbjct: 87  KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
               +    +    +G  I     +   + W+T +     T +    P       +    
Sbjct: 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 205
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
            + A T D  +  W ++    C +     K     + +   V G   + SGS DN + +W
Sbjct: 206 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
           NL+T + +Q L  HT VV+S  C   +  + S +L  DKTIK+W
Sbjct: 265 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K L  W V  G K L  L+GH   V        S+ + SGS DE+VR+WD  +G+C   +
Sbjct: 111 KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 169
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
               +    +    +G  I     +   + W+T +     T +    P       +    
Sbjct: 170 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 229
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
            + A T D  +  W ++    C +     K     + +   V G   + SGS DN + +W
Sbjct: 230 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 288
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
           NL+T + +Q L  HT VV+S  C   +  + S +L  DKTIK+W
Sbjct: 289 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K L  W V  G K L  L+GH   V        S+ + SGS DE+VR+WD  +G+C   +
Sbjct: 86  KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 144
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
               +    +    +G  I     +   + W+T +     T +    P       +    
Sbjct: 145 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 204
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
            + A T D  +  W ++    C +     K     + +   V G   + SGS DN + +W
Sbjct: 205 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 263
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
           NL+T + +Q L  HT VV+S  C   +  + S +L  DKTIK+W
Sbjct: 264 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K L  W V  G K L  L+GH   V        S+ + SGS DE+VR+WD  +G+C   +
Sbjct: 88  KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 146
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
               +    +    +G  I     +   + W+T +     T +    P       +    
Sbjct: 147 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 206
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
            + A T D  +  W ++    C +     K     + +   V G   + SGS DN + +W
Sbjct: 207 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 265
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
           NL+T + +Q L  HT VV+S  C   +  + S +L  DKTIK+W
Sbjct: 266 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K L  W V  G K L  L+GH   V        S+ + SGS DE+VR+WD  +G+C   +
Sbjct: 93  KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
               +    +    +G  I     +   + W+T +     T +    P       +    
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
            + A T D  +  W ++    C +     K     + +   V G   + SGS DN + +W
Sbjct: 212 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
           NL+T + +Q L  HT VV+S  C   +  + S +L  DKTIK+W
Sbjct: 271 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K L  W V  G K L  L+GH   V        S+ + SGS DE+VR+WD  +G C   +
Sbjct: 90  KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTL 148
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
               +    +    +G  I     +   + W+T +     T +    P       +    
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
            + A T D  +  W ++    C +     K     + +   V G   + SGS DN + +W
Sbjct: 209 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
           NL+T + +Q L  HT VV+S  C   +  + S +L  DKTIK+W
Sbjct: 268 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K L  W V  G K L  L+GH   V        S+ + SGS DE+VR+WD  +G+C   +
Sbjct: 92  KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 150
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
               +    +    +G  I     +   + W+T +     T +    P       +    
Sbjct: 151 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 210
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
            + A T D  +  W ++    C +     K     + +   V G   + SGS DN + +W
Sbjct: 211 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 269
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
           NL+T + +Q L  HT VV+S  C   +  + S +L  DKTIK+W
Sbjct: 270 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K L  W V  G K L  L+GH   V        S+ + SGS DE+VR+WD  +G+C   +
Sbjct: 90  KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
               +    +    +G  I     +   + W+T +     T +    P       +    
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
            + A T D  +  W ++    C +     K     + +   V G   + SGS DN + +W
Sbjct: 209 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
           NL+T + +Q L  HT VV+S  C   +  + S +L  DKTIK+W
Sbjct: 268 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K L  W V  G K L  L+GH   V        S+ + SGS DE+VR+WD  +G+C   +
Sbjct: 93  KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
               +    +    +G  I     +   + W+T +     T +    P       +    
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
            + A T D  +  W ++    C +     K     + +   V G   + SGS DN + +W
Sbjct: 212 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
           NL+T + +Q L  HT VV+S  C   +  + S +L  DKTIK+W
Sbjct: 271 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K L  W V  G K L  L+GH   V        S+ + SGS DE+VR+WD  +G C   +
Sbjct: 90  KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTL 148
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
               +    +    +G  I     +   + W+T +     T +    P       +    
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
            + A T D  +  W ++    C +     K     + +   V G   + SGS DN + +W
Sbjct: 209 YILAATLDNDLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
           NL+T + +Q L  HT VV+S  C   +  + S +L  DKTIK+W
Sbjct: 268 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 115/281 (40%), Gaps = 44/281 (15%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM-I 198
           K L QL GH   V  +    G   L SGS D TVRVWD   G C  V       V C+ I
Sbjct: 153 KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 211
Query: 199 SEGPWIFIGVT----NFVKAWNTQTNTDLS------------------------LSGPVG 230
            E   I   VT    N +  W     + +                         L G + 
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 271
Query: 231 QVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKL--YS 288
            V  ++   +++ +G+ D  ++ W       C      L GH+  + S +    +    S
Sbjct: 272 SVRTVSGHGNIVVSGSYDNTLIVWDV-AQMKCL---YILSGHTDRIYSTIYDHERKRCIS 327
Query: 289 GSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEV 348
            SMD +IR+W+LE  + + TL  HT++V  L   D+FL+S + D +I+ W A D    + 
Sbjct: 328 ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSR-KF 386
Query: 349 TYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
           +Y H     +     + D+     +L S ++N    Y+L S
Sbjct: 387 SYHHTNLSAITTFY-VSDN-----ILVSGSENQFNIYNLRS 421

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 108/259 (41%), Gaps = 25/259 (9%)
Query: 92  YRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK 151
           +R G      I+ R+     + C  +     + G +   +  W   +  +    L GH  
Sbjct: 116 WRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWD-KNTLECKRILTGHTG 174
Query: 152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQ--------CAGVINLGGEVGCMISEGPW 203
            V  + L      + +GS D TVRVWD  +G+        C  V++L    G M++    
Sbjct: 175 SV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVT---- 228
Query: 204 IFIGVTNFVKAWNTQTNTDLSLS----GPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVT 259
                   +  W+  + TD++L     G    V  +   +  + + + D  I  W    T
Sbjct: 229 --CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWN---T 283
Query: 260 TNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSL 319
           + C E   +L GH   +  L      + SGS DN+IR+W++E   C++ L  H  +V  +
Sbjct: 284 STC-EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342
Query: 320 LCWDQFLLSCSLDKTIKVW 338
              ++ ++S + D  IKVW
Sbjct: 343 RFDNKRIVSGAYDGKIKVW 361

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 104/237 (43%), Gaps = 11/237 (4%)
Query: 158 LPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCMISEGPWIFIGVTN-FVKAW 215
           L     K+ SG +D T+++WD  + +C  ++    G V C+  +   I  G ++  V+ W
Sbjct: 139 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 198
Query: 216 NTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSL 274
           +  T   L +L      V  +   N ++   ++D +I  W     T+       L GH  
Sbjct: 199 DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRA 257
Query: 275 AVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKT 334
           AV  +      + S S D +I+VWN  T + ++TL  H   +  L   D+ ++S S D T
Sbjct: 258 AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNT 317
Query: 335 IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI 391
           I++W       L V   H E    L  C   D++    ++    D  ++ +DL + +
Sbjct: 318 IRLWDIECGACLRVLEGHEE----LVRCIRFDNKR---IVSGAYDGKIKVWDLVAAL 367

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 273 SLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLD 332
           S  V  L     K+ SG  DN+I++W+  TL+C + LT HT  V+ L   ++ +++ S D
Sbjct: 133 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSD 192
Query: 333 KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN-DNSVRFYDLPS 389
            T++VW   ++G +  T  H+ E    A+  +  + G   ++ +C+ D S+  +D+ S
Sbjct: 193 STVRVW-DVNTGEMLNTLIHHCE----AVLHLRFNNG---MMVTCSKDRSIAVWDMAS 242

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K L  W V  G K L  L+GH   V        S+ + SGS DE+VR+WD  +G+C   +
Sbjct: 90  KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
               +    +    +G  I     +   + W+T +     T +    P       +    
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
            + A T D  +  W ++    C +     K     + +   V G   + SGS DN + +W
Sbjct: 209 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVW 338
           NL+T + +Q L  HT VV+S  C   +  + S +L  DKTIK++
Sbjct: 268 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 99/228 (43%), Gaps = 17/228 (7%)
Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           K L  W V  G K L  L+GH   V        S+ + SGS DE+VR+WD  +G+C   +
Sbjct: 90  KTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Query: 189 NLGGEVGCMI---SEGPWIFIGVTN-FVKAWNTQT----NTDLSLSGPVGQVYAMAVGND 240
               +    +    +G  I     +   + W+T +     T +    P       +    
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVW 298
            + A T D  +  W ++    C +     K     + +   V G   + SGS DN + +W
Sbjct: 209 YILAATLDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 299 NLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL--DKTIKVWFATD 342
           NL+T + +Q L  HT VV+S  C   +  + S +L  DKTIK+ F +D
Sbjct: 268 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL-FKSD 314

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 112/281 (39%), Gaps = 44/281 (15%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGCM-I 198
           K L QL GH   V  +    G   L SGS D TVRVWD   G C  V       V C+ I
Sbjct: 153 KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 211
Query: 199 SEGPWIFIGVT----NFVKAWNTQTNTDLS------------------------LSGPVG 230
            E   I   VT    N +  W     + +                         L G   
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXA 271
Query: 231 QVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKL--YS 288
            V  ++   +++ +G+ D  ++ W       C      L GH+  + S +    +    S
Sbjct: 272 SVRTVSGHGNIVVSGSYDNTLIVWDV-AQXKCL---YILSGHTDRIYSTIYDHERKRCIS 327
Query: 289 GSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEV 348
            S D +IR+W+LE  +   TL  HT++V  L   D+FL+S + D +I+ W A D    + 
Sbjct: 328 ASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSR-KF 386
Query: 349 TYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
           +Y H     +     + D+     +L S ++N    Y+L S
Sbjct: 387 SYHHTNLSAITTFY-VSDN-----ILVSGSENQFNIYNLRS 421

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 114/255 (44%), Gaps = 31/255 (12%)
Query: 94  AGNSKNSNINNRAVIKTDILCRN---WVQGNCMY-GEKCKFLHSWTVGDGFKLLTQLEGH 149
           A N    N+N  +   +D+  R+      G  +  G + + +  W + +  K++  L+GH
Sbjct: 106 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI-ENRKIVMILQGH 164
Query: 150 -QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-GGEVGCMISEGPWIFIG 207
            Q + S    PSG DKL SGS D TVR+WD  +GQC+  +++  G     +S G   +I 
Sbjct: 165 EQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA 223
Query: 208 VTNF---VKAWNTQT--------NTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAW 254
             +    V+ W+++T        + + S +G    VY++    D   + +G+ D ++  W
Sbjct: 224 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283
Query: 255 KFNVTTNCFEPAA--------SLKGHSLAVVSLVVGANKLY--SGSMDNSIRVWNLETLQ 304
                 N  +           +  GH   V+S+    N  Y  SGS D  +  W+ ++  
Sbjct: 284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 343
Query: 305 CIQTLTEHTSVVMSL 319
            +  L  H + V+S+
Sbjct: 344 PLLMLQGHRNSVISV 358

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 30/218 (13%)
Query: 196 CMISEGPWIFIGVTN-FVKAWNTQTNTD-LSLSGPVGQVYAMAV--GNDLLFAGTQDGAI 251
           C   +G ++  G  +  ++ W+ +     + L G    +Y++      D L +G+ D  +
Sbjct: 130 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 189
Query: 252 LAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTL-- 309
             W    T  C    +   G +   VS   G   + +GS+D ++RVW+ ET   ++ L  
Sbjct: 190 RIWDLR-TGQCSLTLSIEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGFLVERLDS 247
Query: 310 -----TEHTSVVMSLLCWD--QFLLSCSLDKTIKVW-----------FATDSGNLEVTYT 351
                T H   V S++     Q ++S SLD+++K+W              +SG  EVTY 
Sbjct: 248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 307
Query: 352 HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
            +++  VL++    + E    +L    D  V F+D  S
Sbjct: 308 GHKDF-VLSVATTQNDE---YILSGSKDRGVLFWDKKS 341

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 98/231 (42%), Gaps = 33/231 (14%)
Query: 139 GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI 198
           GF+ +  + GH   VS +++    D + S S+D+T+++W+  +G C              
Sbjct: 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT----------- 229
Query: 199 SEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNV 258
                 F G   +V+    + N D +L         + V        T++      +   
Sbjct: 230 ------FTGHREWVRM--VRPNQDGTLIASCSNDQTVRV----WVVATKECKAELREHRH 277
Query: 259 TTNCFE--PAASLKGHSLAVVSLVVGANK----LYSGSMDNSIRVWNLETLQCIQTLTEH 312
              C    P +S    S A  S    + K    L SGS D +I++W++ T  C+ TL  H
Sbjct: 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 337
Query: 313 TSVVMSLLCWD--QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLAL 361
            + V  +L     +F+LSC+ DKT++VW   +   ++    H  EH V +L
Sbjct: 338 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH--EHFVTSL 386

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 11/127 (8%)
Query: 268 SLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVV--MSLLCWD 323
           +L GH   V  ++     + + S S D +I+VW+ ET    +TL  HT  V  +S     
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 324 QFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLLCSCNDNSV 382
           + L SCS D TIK+W   D    E   T H  +H V ++  MP+ +    ++ +  D ++
Sbjct: 163 KLLASCSADMTIKLW---DFQGFECIRTMHGHDHNVSSVSIMPNGDH---IVSASRDKTI 216
Query: 383 RFYDLPS 389
           + +++ +
Sbjct: 217 KMWEVQT 223

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 110/255 (43%), Gaps = 21/255 (8%)
Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV-GCMIS 199
           +LL  L GH   V+G+        + S S D+TV++W+        +      V G   S
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 312
Query: 200 EGPWIFIGVTN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK 255
                    ++   VK WN       +L+G    V+ +A   D   + + + D  +  W 
Sbjct: 313 PDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372
Query: 256 FNVTTNCFEPAASLKGHSLAV--VSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHT 313
            N      +   +L GHS +V  V+       + S S D ++++WN    Q +QTLT H+
Sbjct: 373 RN-----GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS 426
Query: 314 SVV--MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP 371
           S V  ++    DQ + S S DKT+K+W    +G L  T T      V  +   PD +   
Sbjct: 427 SSVWGVAFSPDDQTIASASDDKTVKLW--NRNGQLLQTLT-GHSSSVRGVAFSPDGQ--- 480
Query: 372 VLLCSCNDNSVRFYD 386
            +  + +D +V+ ++
Sbjct: 481 TIASASDDKTVKLWN 495

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 12/174 (6%)
Query: 224 SLSGPVGQVYAMAVGN---DLLFAGTQDGAILAWKFNVTTNCFE-PAASLKGHSLAVVSL 279
           +L G  G V ++A      +LL + ++D  +++WK       F  P  S KGHS  V   
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 280 VVGANKLY--SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ--FLLSCSLDKTI 335
            + A+  Y  S S D ++R+W++ T +  Q    H S VMS+    +   ++S S DKTI
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 336 KVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
           KVW  T  G  L     HN+    + +     ++   V + S  ND  V+ ++L
Sbjct: 132 KVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 12/174 (6%)
Query: 224 SLSGPVGQVYAMAVGN---DLLFAGTQDGAILAWKFNVTTNCFE-PAASLKGHSLAVVSL 279
           +L G  G V ++A      +LL + ++D  +++WK       F  P  S KGHS  V   
Sbjct: 6   TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 280 VVGANKLY--SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ--FLLSCSLDKTI 335
            + A+  Y  S S D ++R+W++ T +  Q    H S VMS+    +   ++S S DKTI
Sbjct: 66  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 336 KVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
           KVW  T  G  L     HN+    + +     ++   V + S  ND  V+ ++L
Sbjct: 126 KVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 177

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 12/174 (6%)
Query: 224 SLSGPVGQVYAMAVGN---DLLFAGTQDGAILAWKFNVTTNCFE-PAASLKGHSLAVVSL 279
           +L G  G V ++A      +LL + ++D  +++WK       F  P  S KGHS  V   
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 280 VVGANKLY--SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ--FLLSCSLDKTI 335
            + A+  Y  S S D ++R+W++ T +  Q    H S VMS+    +   ++S S DKTI
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 336 KVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
           KVW  T  G  L     HN+    + +     ++   V + S  ND  V+ ++L
Sbjct: 132 KVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 12/174 (6%)
Query: 224 SLSGPVGQVYAMAVGN---DLLFAGTQDGAILAWKFNVTTNCFE-PAASLKGHSLAVVSL 279
           +L G  G V ++A      +LL + ++D  +++WK       F  P  S KGHS  V   
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 280 VVGANKLY--SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ--FLLSCSLDKTI 335
            + A+  Y  S S D ++R+W++ T +  Q    H S VMS+    +   ++S S DKTI
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 336 KVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
           KVW  T  G  L     HN+    + +     ++   V + S  ND  V+ ++L
Sbjct: 132 KVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 12/174 (6%)
Query: 224 SLSGPVGQVYAMAVGN---DLLFAGTQDGAILAWKFNVTTNCFE-PAASLKGHSLAVVSL 279
           +L G  G V ++A      +LL + ++D  +++WK       F  P  S KGHS  V   
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 280 VVGANKLY--SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ--FLLSCSLDKTI 335
            + A+  Y  S S D ++R+W++ T +  Q    H S VMS+    +   ++S S DKTI
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 336 KVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
           KVW  T  G  L     HN+    + +     ++   V + S  ND  V+ ++L
Sbjct: 132 KVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 227 GPVGQVYAMAVGNDLLFAGTQDGAILAWKFNV-TTNCFEPAASLKGHSLAVVSLVVGANK 285
           G V Q+       D++ + ++D  I+ WK     TN   P  +L+GHS  V  +V+ ++ 
Sbjct: 16  GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG 75
Query: 286 LY--SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLL--CWDQFLLSCSLDKTIKVW 338
            +  SGS D ++R+W+L T    +    HT  V+S+     ++ ++S S DKTIK+W
Sbjct: 76  QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 132

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 227 GPVGQVYAMAVGNDLLFAGTQDGAILAWKFNV-TTNCFEPAASLKGHSLAVVSLVVGANK 285
           G V Q+       D++ + ++D  I+ WK     TN   P  +L+GHS  V  +V+ ++ 
Sbjct: 39  GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG 98
Query: 286 LY--SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLL--CWDQFLLSCSLDKTIKVW 338
            +  SGS D ++R+W+L T    +    HT  V+S+     ++ ++S S DKTIK+W
Sbjct: 99  QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 155

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 82/222 (36%), Gaps = 10/222 (4%)
Query: 134  WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
            W +    K+     GH   V G+          + S D+T+RVW+         I L  E
Sbjct: 867  WNIDSRLKV-ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE 925
Query: 194  VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFA--GTQDGAI 251
            +  +  E   + + V N          T      P  QV    +   L +   G +DGAI
Sbjct: 926  IDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAI 985
Query: 252  LAWKFNVTTNCFEPAASLKGHSLAV--VSLVVGANKLYSGSMDNSIRVWNLETLQCIQTL 309
               +       F       GH  AV  +        L S S D+ I+VWN +T   +   
Sbjct: 986  KIIELP-NNRVFSSGV---GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ 1041
Query: 310  TEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYT 351
                +V    L  D  LLS S D T+KVW    +G +E  +T
Sbjct: 1042 AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI-TGRIERDFT 1082

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 82/222 (36%), Gaps = 10/222 (4%)
Query: 134  WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
            W +    K+     GH   V G+          + S D+T+RVW+         I L  E
Sbjct: 874  WNIDSRLKV-ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE 932
Query: 194  VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFA--GTQDGAI 251
            +  +  E   + + V N          T      P  QV    +   L +   G +DGAI
Sbjct: 933  IDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAI 992
Query: 252  LAWKFNVTTNCFEPAASLKGHSLAV--VSLVVGANKLYSGSMDNSIRVWNLETLQCIQTL 309
               +       F       GH  AV  +        L S S D+ I+VWN +T   +   
Sbjct: 993  KIIELP-NNRVFSSGV---GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ 1048
Query: 310  TEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYT 351
                +V    L  D  LLS S D T+KVW    +G +E  +T
Sbjct: 1049 AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI-TGRIERDFT 1089

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 12/174 (6%)
Query: 224 SLSGPVGQVYAMAVGN---DLLFAGTQDGAILAWKFNVTTNCFE-PAASLKGHSLAVVSL 279
           +L G  G V ++A      +LL + ++D  +++WK       F  P  S KGHS  V   
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 280 VVGANKLY--SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ--FLLSCSLDKTI 335
            + A+  Y  S S D ++R+W++ T +  Q    H S V S+    +   ++S S DKTI
Sbjct: 72  TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTI 131
Query: 336 KVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
           KVW  T  G  L     HN+    + +     ++   V + S  ND  V+ ++L
Sbjct: 132 KVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNL 183

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 96/248 (38%), Gaps = 49/248 (19%)
Query: 145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWI 204
           +LEGH   VS + L +  +   S S D ++R+W+  +GQC                  + 
Sbjct: 62  RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQ-----------------YK 104
Query: 205 FIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFE 264
           F+G T  V          LS+        A +  N  + +G +D A+  W  NV   C  
Sbjct: 105 FLGHTKDV----------LSV--------AFSPDNRQIVSGGRDNALRVW--NVKGECMH 144
Query: 265 P---AASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC 321
                A     S    S  + A  + SG  DN ++VW+L T + +  L  HT+ V S+  
Sbjct: 145 TLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTV 204
Query: 322 WDQFLLSCSLDK--TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND 379
                L  S DK    ++W  T     E          +  +C  P+       +C+  +
Sbjct: 205 SPDGSLCASSDKDGVARLWDLTKG---EALSEMAAGAPINQICFSPNR----YWMCAATE 257
Query: 380 NSVRFYDL 387
             +R +DL
Sbjct: 258 KGIRIFDL 265

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 103/270 (38%), Gaps = 54/270 (20%)
Query: 135 TVGDGFKLLTQL-EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
           T GD +   + L EGHQ+ V  +      + L S S D T  +W         V  L G 
Sbjct: 45  TEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGH 104
Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA 253
                           N VK+                   A A   +LL   ++D ++  
Sbjct: 105 ---------------ENEVKS------------------VAWAPSGNLLATCSRDKSVWV 131
Query: 254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGANK--LYSGSMDNSIRVWNLETLQ--CIQTL 309
           W+ +     +E  + L  H+  V  +V   ++  L S S D++++++  E     C  TL
Sbjct: 132 WEVDEEDE-YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATL 190
Query: 310 TEHTSVVMSLLCWD---QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD 366
             H S V SL  +D   Q L SCS D+T+++W     GN +       +     +C +  
Sbjct: 191 EGHESTVWSLA-FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG 249
Query: 367 SEGKPV-----------LLCSCNDNSVRFY 385
              + +           L  +C D+++R +
Sbjct: 250 FHSRTIYDIAWCQLTGALATACGDDAIRVF 279

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 96/256 (37%), Gaps = 51/256 (19%)
Query: 145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWI 204
           +L GH   V  + L S      SGS D  +R+WD A+G                      
Sbjct: 425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRR----------------- 467
Query: 205 FIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNC-F 263
           F+G T  V          LS+        A ++ N  + + ++D  I  W  N    C +
Sbjct: 468 FVGHTKDV----------LSV--------AFSLDNRQIVSASRDRTIKLW--NTLGECKY 507
Query: 264 EPAASLKGHSLAVVSLVVGANKL----YSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSL 319
             +   +GH   V  +    N L     S S D +++VWNL   +   TL  HT  V ++
Sbjct: 508 TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV 567
Query: 320 LCWDQFLLSCS--LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC 377
                  L  S   D  + +W   +   L   Y+      + ALC  P+       LC+ 
Sbjct: 568 AVSPDGSLCASGGKDGVVLLWDLAEGKKL---YSLEANSVIHALCFSPNR----YWLCAA 620
Query: 378 NDNSVRFYDLPSVIIC 393
            ++ ++ +DL S  I 
Sbjct: 621 TEHGIKIWDLESKSIV 636

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 33/222 (14%)
Query: 171 DETVRVWDCASGQCAGVINLGGEVGCMIS-----EGPWIFIGVTN-FVKAWNTQTNTDL- 223
           +  V VW+  SG  + +     E   + S     +G ++ +G+ N  V  ++ ++ T L 
Sbjct: 112 ERNVYVWNADSGSVSALAETD-ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR 170
Query: 224 SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA 283
           +++G   +V  ++    +L +G++ GAI      +  +      +L+GHS  V  L   +
Sbjct: 171 TMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQI---GTLQGHSSEVCGLAWRS 227
Query: 284 N--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLL--CWDQFLLSC---SLDKTIK 336
           +  +L SG  DN +++W+  +     T T H + V ++    W   LL+    ++DK I 
Sbjct: 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIH 287
Query: 337 VWFAT--------DSGNLEVT----YTHNEEHGVLALCGMPD 366
            W A         D+G+ +VT      H++E  +++  G PD
Sbjct: 288 FWNAATGARVNTVDAGS-QVTSLIWSPHSKE--IMSTHGFPD 326

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	393
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	9e-34
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	2e-25
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	5e-25
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	4e-17
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	3e-33
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	1e-24
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	4e-12
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	4e-07
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	1e-31
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	1e-22
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	1e-20
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	9e-16
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	1e-11
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	2e-30
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	2e-29
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	1e-20
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	2e-16
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	4e-06
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	3e-28
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	1e-23
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	4e-13
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	6e-09
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	3e-28
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	6e-26
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	4e-25
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	6e-24
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	4e-19
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	1e-15
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-12
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-10
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	3e-28
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	3e-24
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	7e-20
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	5e-28
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	5e-26
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	3e-23
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	3e-22
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-27
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-27
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	5e-23
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	7e-23
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	4e-22
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-20
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-17
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-06
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-04
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	5e-27
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	1e-21
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	4e-17
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	3e-16
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	8e-13
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	9e-13
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	2e-05
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	1e-26
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	9e-25
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	1e-24
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	2e-23
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	2e-20
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	3e-11
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	2e-26
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	3e-25
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	3e-22
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	9e-22
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	1e-20
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	4e-20
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	8e-19
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	5e-13
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	1e-11
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	3e-26
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	9e-21
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	1e-17
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	5e-17
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	4e-26
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	2e-20
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	3e-19
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	5e-26
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	7e-18
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	4e-14
3ow8_A	321	WD repeat-containing protein 61; structural genomi	2e-25
3ow8_A	321	WD repeat-containing protein 61; structural genomi	4e-25
3ow8_A	321	WD repeat-containing protein 61; structural genomi	2e-24
3ow8_A	321	WD repeat-containing protein 61; structural genomi	1e-21
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	5e-25
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	4e-22
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	4e-17
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	1e-13
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	6e-25
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	3e-20
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	3e-07
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	7e-25
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	3e-23
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	5e-21
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	4e-11
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	9e-25
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	2e-21
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	3e-16
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	4e-15
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	2e-14
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	4e-12
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	1e-24
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	5e-20
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	3e-15
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	3e-13
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	2e-24
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	5e-19
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	8e-19
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	4e-18
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	1e-16
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	2e-04
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	4e-24
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	1e-22
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	2e-19
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	2e-19
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	2e-14
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	6e-24
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	3e-23
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	6e-19
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	5e-16
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	2e-11
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	5e-06
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	6e-04
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	7e-24
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	8e-22
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	1e-20
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	3e-14
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	8e-13
3jrp_A	379	Fusion protein of protein transport protein SEC13	1e-23
3jrp_A	379	Fusion protein of protein transport protein SEC13	5e-16
3jrp_A	379	Fusion protein of protein transport protein SEC13	3e-15
3jrp_A	379	Fusion protein of protein transport protein SEC13	3e-14
3jrp_A	379	Fusion protein of protein transport protein SEC13	1e-10
3jrp_A	379	Fusion protein of protein transport protein SEC13	7e-10
3jrp_A	379	Fusion protein of protein transport protein SEC13	1e-08
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	1e-23
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	5e-22
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	1e-17
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	3e-17
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	2e-07
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	4e-04
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	3e-23
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	1e-21
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	9e-18
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	1e-14
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	6e-14
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	1e-05
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	7e-23
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	7e-23
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	4e-21
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	2e-19
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	3e-14
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	5e-14
3jro_A	753	Fusion protein of protein transport protein SEC13	7e-23
3jro_A	753	Fusion protein of protein transport protein SEC13	5e-16
3jro_A	753	Fusion protein of protein transport protein SEC13	7e-16
3jro_A	753	Fusion protein of protein transport protein SEC13	9e-15
3jro_A	753	Fusion protein of protein transport protein SEC13	3e-06
3jro_A	753	Fusion protein of protein transport protein SEC13	1e-04
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	1e-22
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	1e-16
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	2e-16
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	3e-15
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	2e-12
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	9e-05
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	2e-22
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	4e-21
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	6e-21
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	2e-17
2pm7_B	297	Protein transport protein SEC13, protein transport	2e-22
2pm7_B	297	Protein transport protein SEC13, protein transport	2e-16
2pm7_B	297	Protein transport protein SEC13, protein transport	4e-16
2pm7_B	297	Protein transport protein SEC13, protein transport	2e-14
2pm7_B	297	Protein transport protein SEC13, protein transport	6e-06
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	1e-21
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	4e-19
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	4e-18
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	3e-10
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	1e-09
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	1e-21
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	5e-17
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	1e-12
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	1e-11
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	2e-21
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	2e-18
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	1e-13
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	8e-11
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	3e-21
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	1e-19
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	3e-18
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	7e-17
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	7e-21
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	2e-19
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	3e-19
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	1e-19
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	2e-16
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	3e-15
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	9e-14
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	2e-11
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	1e-04
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	3e-19
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	2e-14
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	5e-12
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	3e-11
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	1e-08
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	7e-19
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	2e-15
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	8e-15
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	2e-13
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	2e-18
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	4e-16
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	1e-15
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	8e-11
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	5e-18
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	2e-16
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	5e-14
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	1e-13
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	2e-17
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	3e-16
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	4e-15
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	4e-09
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	5e-17
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	6e-17
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	5e-16
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	3e-14
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	4e-14
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	2e-16
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	5e-15
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	1e-12
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	9e-11
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	1e-05
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	9e-16
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	2e-12
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	3e-08
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	2e-14
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	7e-10
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	1e-04
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	2e-13
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	7e-12
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	2e-05
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	2e-12
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	3e-10
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	2e-11
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	4e-09
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	2e-04
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	1e-05
2rhk_C	72	Cleavage and polyadenylation specificity factor su	3e-05
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	7e-05
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	1e-04
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	1e-04
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	4e-04
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	7e-04

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score =  129 bits (326), Expect = 9e-34
 Identities = 55/217 (25%), Positives = 90/217 (41%), Gaps = 25/217 (11%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG- 192
           W      +    L GH   V  +        + +GS D TVRVWD  +G+      L   
Sbjct: 158 WDKNTL-ECKRILTGHTGSVLCLQ-YDE-RVIITGSSDSTVRVWDVNTGEMLNT--LIHH 212

Query: 193 --EVGCMISEGPWIFIGVT----NFVKAWNTQTNTDLS----LSGPVGQVYAMAVGNDLL 242
              V  +      +   VT      +  W+  + TD++    L G    V  +   +  +
Sbjct: 213 CEAVLHLRFNNGMM---VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYI 269

Query: 243 FAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLET 302
            + + D  I  W  N +T   E   +L GH   +  L      + SGS DN+IR+W++E 
Sbjct: 270 VSASGDRTIKVW--NTSTC--EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 325

Query: 303 LQCIQTLTEHTSVVMSLLCWD-QFLLSCSLDKTIKVW 338
             C++ L  H  +V   + +D + ++S + D  IKVW
Sbjct: 326 GACLRVLEGHEELVRC-IRFDNKRIVSGAYDGKIKVW 361

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score =  106 bits (266), Expect = 2e-25
 Identities = 64/314 (20%), Positives = 110/314 (35%), Gaps = 72/314 (22%)

Query: 81  RNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGF 140
           R         N     +   N   RA+    I     ++ N            W  G   
Sbjct: 75  RRGWGQYLFKNKPPDGNAPPNSFYRALYPKIIQDIETIESN------------WRCGRH- 121

Query: 141 KLLTQLEGHQKVVSGIT--LPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI 198
             L ++    +   G+         K+ SG +D T+++WD  + +C  +           
Sbjct: 122 -SLQRIHCRSETSKGVYCLQYDD-QKIVSGLRDNTIKIWDKNTLECKRI----------- 168

Query: 199 SEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNV 258
                                     L+G  G V  +     ++  G+ D  +  W  +V
Sbjct: 169 --------------------------LTGHTGSVLCLQYDERVIITGSSDSTVRVW--DV 200

Query: 259 TTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCI---QTLTEHTSV 315
            T   E   +L  H  AV+ L      + + S D SI VW++ +   I   + L  H + 
Sbjct: 201 NT--GEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 258

Query: 316 VMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLL 374
           V  +   D++++S S D+TIKVW  T +     T   H    G+  L           L+
Sbjct: 259 VNVVDFDDKYIVSASGDRTIKVW-NTSTCEFVRTLNGHK--RGIACLQ--YRDR----LV 309

Query: 375 CSC-NDNSVRFYDL 387
            S  +DN++R +D+
Sbjct: 310 VSGSSDNTIRLWDI 323

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score =  104 bits (262), Expect = 5e-25
 Identities = 44/237 (18%), Positives = 79/237 (33%), Gaps = 58/237 (24%)

Query: 137 GDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC 196
                L   L GH+  V+ +        + S S D T++VW+ ++ +             
Sbjct: 243 PTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRT--------- 291

Query: 197 MISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKF 256
                                       L+G    +  +   + L+ +G+ D  I  W  
Sbjct: 292 ----------------------------LNGHKRGIACLQYRDRLVVSGSSDNTIRLW-- 321

Query: 257 NVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLET---------LQCIQ 307
           ++          L+GH   V  +     ++ SG+ D  I+VW+L             C++
Sbjct: 322 DIECG--ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR 379

Query: 308 TLTEHTSVVMSLLCWD-QFLLSCSLDKTIKVW-FATDSGNLEVTYT-HNEEHGVLAL 361
           TL EH+  V  L  +D   ++S S D TI +W F              +       +
Sbjct: 380 TLVEHSGRVFRL-QFDEFQIVSSSHDDTILIWDFLN--DPAAQAEPPRSPSRTYTYI 433

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 81.6 bits (202), Expect = 4e-17
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 9/134 (6%)

Query: 257 NVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVV 316
               +  +        S  V  L     K+ SG  DN+I++W+  TL+C + LT HT  V
Sbjct: 117 RCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV 176

Query: 317 MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLLC 375
           + L   ++ +++ S D T++VW   ++G +  T   H     VL L    +     ++ C
Sbjct: 177 LCLQYDERVIITGSSDSTVRVW-DVNTGEMLNTLIHHC--EAVLHLR--FN--NGMMVTC 229

Query: 376 SCNDNSVRFYDLPS 389
           S  D S+  +D+ S
Sbjct: 230 S-KDRSIAVWDMAS 242

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score =  125 bits (316), Expect = 3e-33
 Identities = 55/256 (21%), Positives = 89/256 (34%), Gaps = 53/256 (20%)

Query: 139 GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI 198
           G++L   L+GH + V  +     S K+ S S+D TVR+W                     
Sbjct: 7   GYQLSATLKGHDQDVRDVVAVDDS-KVASVSRDGTVRLWSKDDQWLGT------------ 53

Query: 199 SEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWK-FN 257
                +      F+ +        +       +         LL  G +D  I     F 
Sbjct: 54  -----VVYTGQGFLNS--------VCYD-SEKE---------LLLFGGKDTMINGVPLFA 90

Query: 258 VTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVM 317
            +    +P  +L GH   V SL      + SGS D + +VW       +  L  H + V 
Sbjct: 91  TSGE--DPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVW 146

Query: 318 SLLC--WD-QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLL 374
                 +     L+ S DKTIK+W    +  +  T++      V  L  + D        
Sbjct: 147 DAKVVSFSENKFLTASADKTIKLW---QNDKVIKTFSGIHNDVVRHLAVVDDGH-----F 198

Query: 375 CSC-NDNSVRFYDLPS 389
            SC ND  ++  D+ +
Sbjct: 199 ISCSNDGLIKLVDMHT 214

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score =  102 bits (256), Expect = 1e-24
 Identities = 49/258 (18%), Positives = 90/258 (34%), Gaps = 56/258 (21%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
           +        L  L GHQ  V  ++       + SGS D+T +VW    G    V NL   
Sbjct: 89  FATSGE-DPLYTLIGHQGNVCSLSF-QD-GVVISGSWDKTAKVWK--EGSL--VYNLQAH 141

Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA 253
                                           +  V     ++   +     + D  I  
Sbjct: 142 --------------------------------NASVWDAKVVSFSENKFLTASADKTIKL 169

Query: 254 WKFNVTTNCFEPAASLKG-HSLAVVSLVVGAN-KLYSGSMDNSIRVWNLETLQCIQTLTE 311
           W+        +      G H+  V  L V  +    S S D  I++ ++ T   ++T   
Sbjct: 170 WQ---NDKVIKT---FSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEG 223

Query: 312 HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEG 369
           H S V   +    +  ++SC  D+T+++W   ++G+L+   T      + ++  M +  G
Sbjct: 224 HESFVYC-IKLLPNGDIVSCGEDRTVRIWSK-ENGSLKQVITLPAIS-IWSVDCMSN--G 278

Query: 370 KPVLLCSCNDNSVRFYDL 387
              ++   +DN VR +  
Sbjct: 279 D--IIVGSSDNLVRIFSQ 294

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 65.2 bits (160), Expect = 4e-12
 Identities = 24/182 (13%), Positives = 54/182 (29%), Gaps = 49/182 (26%)

Query: 141 KLLTQLEG-HQKVVSGIT-LPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI 198
           K++    G H  VV  +  +  G     S S D  +++ D  +G                
Sbjct: 174 KVIKTFSGIHNDVVRHLAVVDDG--HFISCSNDGLIKLVDMHTGDVLRT----------- 220

Query: 199 SEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFN 257
                                       G    VY + +  +  + +  +D  +  W  +
Sbjct: 221 --------------------------YEGHESFVYCIKLLPNGDIVSCGEDRTVRIW--S 252

Query: 258 VTTNCFEPAASLKGHSLAVVSLVVGAN-KLYSGSMDNSIRVWNLETLQCI--QTLTEHTS 314
                      +   ++++ S+   +N  +  GS DN +R+++ E  +      +     
Sbjct: 253 KENG--SLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWASEDEIKGELR 310

Query: 315 VV 316
             
Sbjct: 311 SG 312

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Length = 313

 Score = 50.2 bits (121), Expect = 4e-07
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGIT-LPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
           W+  +G  L   +      +  +  + +G   +  GS D  VR++     + A    + G
Sbjct: 251 WSKENG-SLKQVITLPAISIWSVDCMSNG--DIIVGSSDNLVRIFSQEKSRWASEDEIKG 307

Query: 193 EV--GC 196
           E+  GC
Sbjct: 308 ELRSGC 313

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score =  123 bits (311), Expect = 1e-31
 Identities = 51/275 (18%), Positives = 93/275 (33%), Gaps = 40/275 (14%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
           W+V DG      L GH+  V+ I +   G   + S S D T+R+W+C +G          
Sbjct: 166 WSVKDG-SNPRTLIGHRATVTDIAIIDRGR-NVLSASLDGTIRLWECGTGTTIHTF---- 219

Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGA 250
                            N +  +         +S    +   +  G     + AG   G 
Sbjct: 220 -------NRKENPHDGVNSIALFVGTDRQLHEIST--SKKNNLEFGTYGKYVIAGHVSGV 270

Query: 251 ILAWKFNVTT--NCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQC 305
           I     NV +     +        + +  SL V    AN +Y+G  +  +  W+L + +C
Sbjct: 271 ITVH--NVFSKEQTIQL---PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC 325

Query: 306 I--QTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE------ 355
              + L    + + + + +      +S   D +IK+   +D  +                
Sbjct: 326 PVGEFLINEGTPINN-VYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSN 384

Query: 356 -HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
              V   C + D E    +L    +N    Y+L +
Sbjct: 385 DDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 97.7 bits (244), Expect = 1e-22
 Identities = 39/251 (15%), Positives = 78/251 (31%), Gaps = 56/251 (22%)

Query: 146 LEGHQKVVSGITL----PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEG 201
           + G+ + V           GS  LY    D    +++      + ++             
Sbjct: 49  VLGNSRGVDAGKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVD---- 103

Query: 202 PWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTN 261
                                        + +           GT +G I     +   N
Sbjct: 104 ------------TAK-----------LQMRRFI---------LGTTEGDIKVL--DSNFN 129

Query: 262 CFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMS 318
                   + H   +  L     G   L S S D  +++W+++     +TL  H + V  
Sbjct: 130 --LQREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTD 186

Query: 319 LLCW--D-QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH--GVLALCGMPDSEGKPVL 373
            +      + +LS SLD TI++W    +G    T+   E    GV ++     ++ +   
Sbjct: 187 -IAIIDRGRNVLSASLDGTIRLW-ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHE 244

Query: 374 LCSCNDNSVRF 384
           + +   N++ F
Sbjct: 245 ISTSKKNNLEF 255

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 91.9 bits (229), Expect = 1e-20
 Identities = 42/275 (15%), Positives = 82/275 (29%), Gaps = 56/275 (20%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLG- 191
                        + H   ++ +   PSG   L S S+D  +++W    G     +  G 
Sbjct: 124 LDSNFN-LQREIDQAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLI-GH 180

Query: 192 -GEVG--CMISEGPWIFIGVT----NFVKAWNTQTNTDLS----LSGPVGQVYAMAVGND 240
              V    +I  G  +   ++      ++ W   T T +        P   V ++A+   
Sbjct: 181 RATVTDIAIIDRGRNV---LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVG 237

Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVW 298
                      L                 +  +    +L  G     + +G +   I V 
Sbjct: 238 -------TDRQLH----------------EISTSKKNNLEFGTYGKYVIAGHVSGVITVH 274

Query: 299 NLET-LQCIQTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVWFATDSGNLEVTYT-HN 353
           N+ +  Q IQ  ++ T    SL        ++ +   +  +  W    S    V     N
Sbjct: 275 NVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQW-DLRSPECPVGEFLIN 333

Query: 354 EEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
           E   +  +     +     L  S   D S++   +
Sbjct: 334 EGTPINNVYFAAGA-----LFVSSGFDTSIKLDII 363

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 77.3 bits (191), Expect = 9e-16
 Identities = 31/220 (14%), Positives = 61/220 (27%), Gaps = 53/220 (24%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
           +         +++       +  T      +   G+ +  ++V D        +      
Sbjct: 83  FNTIIR--DGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREI------ 134

Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAI 251
                                              V ++  +        L + +QD  +
Sbjct: 135 -------------------------------DQAHVSEITKLKFFPSGEALISSSQDMQL 163

Query: 252 LAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTL 309
             W  +V         +L GH   V  + +      + S S+D +IR+W   T   I T 
Sbjct: 164 KIW--SVKDG--SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 219

Query: 310 TEHTSV---VMSLLCW---DQFLLSCSLDKTIKVWFATDS 343
               +    V S+  +   D+ L   S  K   + F T  
Sbjct: 220 NRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG 259

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 19/130 (14%)

Query: 264 EPAASLKGHSLAVVSLVVGA-----NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMS 318
           E    + G+S  V +          + LY   +D    ++N       + L +       
Sbjct: 44  EHKIVVLGNSRGVDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKML-KRADYTAV 102

Query: 319 LLCWD---QFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLL 374
                   +  +  + +  IKV   ++          H     +  L   P  E     L
Sbjct: 103 -DTAKLQMRRFILGTTEGDIKVL-DSNFNLQREIDQAH--VSEITKLKFFPSGE----AL 154

Query: 375 CSC-NDNSVR 383
            S   D  ++
Sbjct: 155 ISSSQDMQLK 164

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score =  120 bits (304), Expect = 2e-30
 Identities = 55/261 (21%), Positives = 102/261 (39%), Gaps = 36/261 (13%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSG--ITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG 191
           W +  G       EGH   V    I        + +GS+D T+ VW              
Sbjct: 188 WDIKKG-CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246

Query: 192 GEVGCMI--SEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDG 249
            +   +    E    F+GV                L G +  V  ++   +++ +G+ D 
Sbjct: 247 HDYPLVFHTPEENPYFVGV----------------LRGHMASVRTVSGHGNIVVSGSYDN 290

Query: 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNLETLQCIQ 307
            ++ W  +V     +    L GH+  + S +      +  S SMD +IR+W+LE  + + 
Sbjct: 291 TLIVW--DVAQM--KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 346

Query: 308 TLTEHTSVVMSLLCWD-QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD 366
           TL  HT++V   L    +FL+S + D +I+ W   D+ +    ++++  +          
Sbjct: 347 TLQGHTALVGL-LRLSDKFLVSAAADGSIRGW---DANDYSRKFSYHHTNLSAITTFYVS 402

Query: 367 SEGKPVLLCSCNDNSVRFYDL 387
                 +L S ++N    Y+L
Sbjct: 403 DN----ILVSGSENQFNIYNL 419

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score =  117 bits (296), Expect = 2e-29
 Identities = 54/218 (24%), Positives = 84/218 (38%), Gaps = 40/218 (18%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG- 192
           +   +  K L QL GH   V  +    G   L SGS D TVRVWD   G C  V    G 
Sbjct: 147 YDSINK-KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHV--FEGH 202

Query: 193 --EVGCMI----SEGPWIFIGVT----NFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLL 242
              V C+         +I   VT    N +  W     + +   G       +    +  
Sbjct: 203 NSTVRCLDIVEYKNIKYI---VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE-- 257

Query: 243 FAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLET 302
                                     L+GH  +V ++    N + SGS DN++ VW++  
Sbjct: 258 ------------------ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ 299

Query: 303 LQCIQTLTEHTSVVMSL-LCWD-QFLLSCSLDKTIKVW 338
           ++C+  L+ HT  + S     + +  +S S+D TI++W
Sbjct: 300 MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 337

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 92.3 bits (230), Expect = 1e-20
 Identities = 48/276 (17%), Positives = 75/276 (27%), Gaps = 49/276 (17%)

Query: 114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET 173
            +NW +         K L         K    L                 +L        
Sbjct: 42  SQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLENIFI 101

Query: 174 VRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVY 233
           ++ W                             G    V        T L          
Sbjct: 102 LKNWYNPKFVPQRT----------------TLRGHMTSV-------ITCLQFED------ 132

Query: 234 AMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSM 291
                 + +  G  D  I  +  +      +    L GH   V +L    G   L SGS 
Sbjct: 133 ------NYVITGADDKMIRVY--DSINK--KFLLQLSGHDGGVWALKYAHG-GILVSGST 181

Query: 292 DNSIRVWNLETLQCIQTLTEHTSVVMSL-LCWD---QFLLSCSLDKTIKVWFATDSGNLE 347
           D ++RVW+++   C      H S V  L +      +++++ S D T+ VW         
Sbjct: 182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW---KLPKES 238

Query: 348 VTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVR 383
               H EEH    +   P+     V +   +  SVR
Sbjct: 239 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 274

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 34/208 (16%), Positives = 61/208 (29%), Gaps = 47/208 (22%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
           W V    K L  L GH   +          +  S S D T+R+WD  +G+          
Sbjct: 295 WDVAQM-KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT------ 347

Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA 253
                                          L G    V  + + +  L +   DG+I  
Sbjct: 348 -------------------------------LQGHTALVGLLRLSDKFLVSAAADGSIRG 376

Query: 254 WKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQ-TLT 310
           W  +      +       H+            N L SGS +N   ++NL + + +   + 
Sbjct: 377 W--DANDYSRKF---SYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANIL 430

Query: 311 EHTSVVMSLLCWDQFLLSCSLDKTIKVW 338
           +    + S+    + L++          
Sbjct: 431 KDADQIWSVNFKGKTLVAAVEKDGQSFL 458

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 22/181 (12%), Positives = 45/181 (24%), Gaps = 71/181 (39%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
           W + +G +L+  L+GH  +V  + L S    L S + D ++R WD               
Sbjct: 337 WDLENG-ELMYTLQGHTALVGLLRL-SD-KFLVSAAADGSIRGWDANDYS---------- 383

Query: 194 VGCMISEGPWIFIGVTNF--------------VKAWNTQTNTDLSLSGPVGQVYAMAVGN 239
                S        +T F                 +N ++   +                
Sbjct: 384 --RKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH--------------- 426

Query: 240 DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWN 299
                                      A++   +  + S+      L +    +      
Sbjct: 427 ---------------------------ANILKDADQIWSVNFKGKTLVAAVEKDGQSFLE 459

Query: 300 L 300
           +
Sbjct: 460 I 460

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score =  114 bits (286), Expect = 3e-28
 Identities = 44/269 (16%), Positives = 89/269 (33%), Gaps = 58/269 (21%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
            T+ D +++L +     +  + +   P+    +  GSK   + +W+              
Sbjct: 104 HTL-DSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF----- 157

Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAV----GNDLLFAGTQD 248
                                         +   G  G +  +       N   +A + +
Sbjct: 158 ------------------------------IKGIGAGGSITGLKFNPLNTN-QFYASSME 186

Query: 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLY--SGSMDNSIRVWNLETLQCI 306
           G       +   N     AS    ++   SL V A+     +G    ++ + N++  + +
Sbjct: 187 GTTRLQ--DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KEL 243

Query: 307 QTLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH--GVLA 360
             L  H   V   +      D FL + S+D+T+K+W        + ++ ++  H   V A
Sbjct: 244 WNLRMHKKKVTH-VALNPCCDWFLATASVDQTVKIWDLR-QVRGKASFLYSLPHRHPVNA 301

Query: 361 LCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
            C  PD  G   LL +   + +R Y    
Sbjct: 302 ACFSPD--GA-RLLTTDQKSEIRVYSASQ 327

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score =  100 bits (251), Expect = 1e-23
 Identities = 43/295 (14%), Positives = 81/295 (27%), Gaps = 54/295 (18%)

Query: 134 WTVGDG-FKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLG 191
           W  G        +  G    ++G+   P  +++ Y+ S + T R+ D          +  
Sbjct: 147 WNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSD 206

Query: 192 GEVGCMIS-----EGPWIFIGVT----NFVKAWNTQTNTDLSLSGPVGQVYAMAV---GN 239
                  S         +   VT      V   N       +L     +V  +A+    +
Sbjct: 207 TINIWFCSLDVSASSRMV---VTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCD 263

Query: 240 DLLFAGTQDGAILAWKFNVTT-NCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSI 295
             L   + D  +  W  ++              H   V +      G  +L +    + I
Sbjct: 264 WFLATASVDQTVKIW--DLRQVRGKASFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEI 320

Query: 296 RVWNLETLQCIQTLTEHTSVVMSLLCW-------------------DQFLLSCSLD-KTI 335
           RV++     C   L  H       L                       F      + +TI
Sbjct: 321 RVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTI 380

Query: 336 KVWFATDSGNLEVTYTHNEEH--GVLALCGM-PDSEGKPVLLCSCNDNSVRFYDL 387
            V+   D  + ++     +    G+ +L    P   G    L S     +  +  
Sbjct: 381 DVF---DGNSGKMMCQLYDPESSGISSLNEFNPM--GD--TLASAMGYHILIWSQ 428

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 22/181 (12%), Positives = 47/181 (25%), Gaps = 38/181 (20%)

Query: 137 GDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG 195
             G         H+  V+     P G+ +L +  +   +RV+  +   C           
Sbjct: 283 VRGKASFLYSLPHRHPVNAACFSPDGA-RLLTTDQKSEIRVYSASQWDC----------- 330

Query: 196 CMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAV---GNDLLFAGTQDGAIL 252
                 P   I   +      T          P   +  +      N       +   I 
Sbjct: 331 ------PLGLIPHPHRHFQHLTPIKAAWH---PRYNLIVVGRYPDPNFKSCTPYELRTID 381

Query: 253 AWKFNVTTNCFEPAASL-KGHSLAVVSLVVGA-----NKLYSGSMDNSIRVWNLETLQCI 306
            +  +  +   +    L    S  + S  +       + L S      I +W+ +  +  
Sbjct: 382 VF--DGNSG--KMMCQLYDPESSGISS--LNEFNPMGDTLASAM-GYHILIWSQQEARTR 434

Query: 307 Q 307
           +
Sbjct: 435 K 435

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 14/102 (13%), Positives = 24/102 (23%), Gaps = 15/102 (14%)

Query: 245 GTQDGAILAWKFNVTTNCFEP----AASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNL 300
             +  +   W          P      +L  H L   S                  +  L
Sbjct: 53  SRRCDSDCLWVGLAGPQILPPCRSIVRTLHQHKLGRASWPSVQ------QGLQQSFLHTL 106

Query: 301 ETLQCIQTLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVW 338
           ++ + +Q          S L W       +   S    I +W
Sbjct: 107 DSYRILQKAAPFDRRATS-LAWHPTHPSTVAVGSKGGDIMLW 147

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score =  115 bits (290), Expect = 3e-28
 Identities = 46/296 (15%), Positives = 98/296 (33%), Gaps = 39/296 (13%)

Query: 127 KCKFLHSWTVGDG-FKLLTQLEGHQ-KVVSGIT---LPSGSDKLYSGSKDETVRVWDCAS 181
           K  F+     GD     + Q  GH   VV+ +    +      L SG +   V VW    
Sbjct: 39  KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTF 97

Query: 182 GQCAGVIN---------LGGEVGCMI--SEGPWIFI---GVTNFVKAWNTQTNTDL-SLS 226
            + +  +          L G +  +    EG  + +   G  NF    +  +   L  +S
Sbjct: 98  DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVS 157

Query: 227 GPVGQVYAMAV---GNDLLFAGTQDGAILAWKFNVTT-NCFEPAASLKGHSLAVVSLVV- 281
           G   ++ A  +             DG+++ +              +       V  +   
Sbjct: 158 GHSQRINACHLKQSRPMRSMTVGDDGSVVFY--QGPPFKFSASDRTHHKQGSFVRDVEFS 215

Query: 282 --GANKLYSGSMDNSIRVWNLETLQCIQTLTEHT----SVVMSLLCWD-QFLLSCSLDKT 334
                 + +   D  I  ++ ++ + ++ + +        + +L   D Q   +   D T
Sbjct: 216 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT 275

Query: 335 IKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
           I+VW    +      +T   ++ G   +  +    G+  ++    D ++ FY+L  
Sbjct: 276 IRVW-DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR--IISLSLDGTLNFYELGH 328

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score =  108 bits (272), Expect = 6e-26
 Identities = 52/270 (19%), Positives = 101/270 (37%), Gaps = 42/270 (15%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSD--KLYSGSKDETVRVWDCASGQCAGVINL 190
           +    G + L  +E  Q+ V G     S  D  K  +   D T+RVWD  + +C     L
Sbjct: 234 FDGKSG-EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL 292

Query: 191 GGE------VGCMISEGPWIFIGVT----NFVKAWNTQTNTDL-SLSGPVGQVYAMAVGN 239
             +      VG + +    I   ++      +  +    +  L ++SG    + A+ V  
Sbjct: 293 DKQQLGNQQVGVVATGNGRI---ISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-- 347

Query: 240 DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK-LYSGSMDNSIRVW 298
           + L +G+ DG I+ W  + ++         + HS  +VSL     +   S S D++++V 
Sbjct: 348 NPLISGSYDGRIMEW--SSSS-------MHQDHSNLIVSLDNSKAQEYSSISWDDTLKVN 398

Query: 299 NLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGV 358
            +   +          V  +    D F    + D  + +  +  +G++  +   N     
Sbjct: 399 GITKHEFGSQP----KVASANN--DGFTAVLTNDDDLLILQSF-TGDIIKSVRLNSPGSA 451

Query: 359 LALCGMPDSEGKPVLLCSCN-DNSVRFYDL 387
           ++L     +    V L   N     +  DL
Sbjct: 452 VSLSQNYVA----VGLEEGNTIQVFKLSDL 477

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score =  106 bits (266), Expect = 4e-25
 Identities = 45/273 (16%), Positives = 84/273 (30%), Gaps = 47/273 (17%)

Query: 134 WTVGDG--FKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVIN- 189
           +                    V  +   P   + + +   D  +  +D  SG+    I  
Sbjct: 188 YQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED 247

Query: 190 -----LGGEVGCMISEGPWIFIGVT----NFVKAWNTQTNT---DLSLSGPVGQVYAMAV 237
                 GG       +        T      ++ W+  T+      +L         + V
Sbjct: 248 DQEPVQGGIFALSWLDSQKF---ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304

Query: 238 ---GNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNS 294
              GN  + + + DG +  +   +  +  E   ++ GH+  + +L V  N L SGS D  
Sbjct: 305 VATGNGRIISLSLDGTLNFY--ELGHD--EVLKTISGHNKGITALTV--NPLISGSYDGR 358

Query: 295 IRVWNLETLQCIQTLTEHTSVVMSLLCWD-QFLLSCSLDKTIKVWFATDSGNLEVTYTHN 353
           I  W+  +        +H+++++SL     Q   S S D T+KV        +     H 
Sbjct: 359 IMEWSSSS-----MHQDHSNLIVSLDNSKAQEYSSISWDDTLKVN------GIT---KHE 404

Query: 354 EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386
                       D           ND+ +    
Sbjct: 405 FGSQPKVASANNDG----FTAVLTNDDDLLILQ 433

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score =  102 bits (257), Expect = 6e-24
 Identities = 43/272 (15%), Positives = 83/272 (30%), Gaps = 56/272 (20%)

Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGV 187
            F    +   G   L ++ GH + ++   L  S   +  +   D +V  +     + +  
Sbjct: 140 NFGVFISWDSG-NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 198

Query: 188 INLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQ 247
                                 +FV         D+  S   G+          +     
Sbjct: 199 DR--------------THHKQGSFV--------RDVEFSPDSGE---------FVITVGS 227

Query: 248 DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA-----NKLYSGSMDNSIRVWNLET 302
           D  I  +  +  +   E    ++     V   +         K  +   D +IRVW++ T
Sbjct: 228 DRKISCF--DGKSG--EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT 283

Query: 303 LQCIQTLT--EHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHG 357
            +C+Q  T  +       +      +  ++S SLD T+  +       L+    HN   G
Sbjct: 284 SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHN--KG 341

Query: 358 VLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
           + AL   P       L+    D  +  +   S
Sbjct: 342 ITALTVNP-------LISGSYDGRIMEWSSSS 366

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 88.1 bits (219), Expect = 4e-19
 Identities = 29/258 (11%), Positives = 70/258 (27%), Gaps = 67/258 (25%)

Query: 144 TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPW 203
           +  + H  ++  +       +  S S D+T++V      +                    
Sbjct: 366 SMHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEF------------------- 405

Query: 204 IFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNC 262
                                      Q    +  ND      T D  +L       T  
Sbjct: 406 -------------------------GSQPKVASANNDGFTAVLTNDDDLLIL--QSFT-- 436

Query: 263 FEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQCIQTLTEH--TSVVM 317
            +   S++ +S      +     A  L  G+     ++ +LE    ++T      + + +
Sbjct: 437 GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISI 496

Query: 318 SLLCWD-QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLC- 375
           S       ++ +  +   I ++    S  ++ +        + A+   P  +G       
Sbjct: 497 SP---SETYIAAGDVMGKILLY-DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 552

Query: 376 ------SCNDNSVRFYDL 387
                    D ++  Y +
Sbjct: 553 EDLVATGSLDTNIFIYSV 570

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 36/275 (13%), Positives = 80/275 (29%), Gaps = 44/275 (16%)

Query: 148 GHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS------- 199
             +   + ++  P+ +   Y   K   VR  D    +   V+   G    +++       
Sbjct: 16  TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPI 75

Query: 200 -EGPWIFIG-VTNFVKAWNTQT---------NTDLSLSGPVGQVYAMAV---GNDLLFA- 244
               ++  G  +  V  W             N         G +  ++    G  L    
Sbjct: 76  KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 135

Query: 245 GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLE 301
             +D   +    +  +        + GHS  + +  +      +  +   D S+  +   
Sbjct: 136 EGRDNFGVFI--SWDSG--NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP 191

Query: 302 T---LQCIQTLTEHTSVVMSLLCW--D--QFLLSCSLDKTIKVWFATDSGNLEVTYT-HN 353
                   +T  +  S V   + +  D  +F+++   D+ I  +    SG          
Sbjct: 192 PFKFSASDRTHHKQGSFVRD-VEFSPDSGEFVITVGSDRKISCF-DGKSGEFLKYIEDDQ 249

Query: 354 EEHGVLAL-CGMPDSEGKPVLLCSCNDNSVRFYDL 387
           E            DS+          D ++R +D+
Sbjct: 250 EPVQGGIFALSWLDSQ---KFATVGADATIRVWDV 281

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 67.6 bits (166), Expect = 2e-12
 Identities = 30/186 (16%), Positives = 52/186 (27%), Gaps = 30/186 (16%)

Query: 226 SGPVGQVYAMAV---GNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVV----- 277
           S        ++     N + +   +   +     +   +   P     GH  +VV     
Sbjct: 15  STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCL--DDGDSKVPPVVQFTGHGSSVVTTVKF 72

Query: 278 SLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTE--------HTSVVMSLLCWD---QFL 326
           S + G+  L SG     + VW     +   ++              +   + WD   + L
Sbjct: 73  SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD-ISWDFEGRRL 131

Query: 327 L--SCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVR 383
                  D         DSGN     + H     + A             +   +D SV 
Sbjct: 132 CVVGEGRDNFGVFISW-DSGNSLGEVSGH--SQRINACHLKQS--RPMRSMTVGDDGSVV 186

Query: 384 FYDLPS 389
           FY  P 
Sbjct: 187 FYQGPP 192

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 30/172 (17%), Positives = 55/172 (31%), Gaps = 35/172 (20%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
             +   F L T L       S I++ PS +  + +G     + ++D  S +         
Sbjct: 475 SDLEVSFDLKTPLRAK---PSYISISPSET-YIAAGDVMGKILLYDLQSREVKT------ 524

Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFA-GTQDGAI 251
                       +   T+ +          +S   P  +        + L A G+ D  I
Sbjct: 525 ----------SRWAFRTSKI--------NAISWK-PAEKGANEEEIEEDLVATGSLDTNI 565

Query: 252 LAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN-KLYSGSMDNSIRVWNLET 302
             +  +V     +   +L  H   V +L+      L S   D  I+ WN+  
Sbjct: 566 FIY--SVKRP-MKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNVVL 614

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score =  113 bits (286), Expect = 3e-28
 Identities = 69/256 (26%), Positives = 104/256 (40%), Gaps = 52/256 (20%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
           W    G + +  L GH   V  + L     ++ SGS+D T+RVWD  +GQC  V      
Sbjct: 184 WNAETG-ECIHTLYGHTSTVRCMHL-HE-KRVVSGSRDATLRVWDIETGQCLHV------ 234

Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA 253
                                          L G V  V  +      + +G  D  +  
Sbjct: 235 -------------------------------LMGHVAAVRCVQYDGRRVVSGAYDFMVKV 263

Query: 254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHT 313
           W  +  T       +L+GH+  V SL      + SGS+D SIRVW++ET  CI TLT H 
Sbjct: 264 W--DPETE--TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ 319

Query: 314 SVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH--GVLALCGMPDSEGKP 371
           S+   +   D  L+S + D T+K+W    +G    T     +H   V  L    +     
Sbjct: 320 SLTSGMELKDNILVSGNADSTVKIW-DIKTGQCLQTLQGPNKHQSAVTCLQFNKNF---- 374

Query: 372 VLLCSCNDNSVRFYDL 387
            ++ S +D +V+ +DL
Sbjct: 375 -VITSSDDGTVKLWDL 389

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score =  102 bits (257), Expect = 3e-24
 Identities = 51/228 (22%), Positives = 83/228 (36%), Gaps = 52/228 (22%)

Query: 114 CRNW---VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK 170
           CR W    + N ++ EKCK            +   L   ++ V          K     +
Sbjct: 46  CRYWRILAEDNLLWREKCK---------EEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQ 96

Query: 171 DETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVG 230
                 W     +                  P +  G  + V        T L   G   
Sbjct: 97  HRIDTNWRRGELKS-----------------PKVLKGHDDHV-------ITCLQFCG--- 129

Query: 231 QVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGS 290
                    + + +G+ D  +  W  +  T   +   +L GH+  V S  +  N + SGS
Sbjct: 130 ---------NRIVSGSDDNTLKVW--SAVTG--KCLRTLVGHTGGVWSSQMRDNIIISGS 176

Query: 291 MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVW 338
            D +++VWN ET +CI TL  HTS V  +   ++ ++S S D T++VW
Sbjct: 177 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 224

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 89.7 bits (223), Expect = 7e-20
 Identities = 44/218 (20%), Positives = 73/218 (33%), Gaps = 56/218 (25%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
           W        L  L+GH   V  +    G   + SGS D ++RVWD  +G C         
Sbjct: 264 WDPETE-TCLHTLQGHTNRVYSLQF-DGI-HVVSGSLDTSIRVWDVETGNC--------- 311

Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA 253
                                    T     L+G       M + +++L +G  D  +  
Sbjct: 312 -----------------------IHT-----LTGHQSLTSGMELKDNILVSGNADSTVKI 343

Query: 254 WKFNVTT-NCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTE- 311
           W  ++ T  C +       H  AV  L    N + + S D ++++W+L+T + I+ L   
Sbjct: 344 W--DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTL 401

Query: 312 ----HTSVVMSLLCWD---QFLLSCSLDKT----IKVW 338
                  VV   +            S + T    + V 
Sbjct: 402 ESGGSGGVVWR-IRASNTKLVCAVGSRNGTEETKLLVL 438

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score =  111 bits (279), Expect = 5e-28
 Identities = 63/264 (23%), Positives = 110/264 (41%), Gaps = 55/264 (20%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
             V   + L   L GH K VS +   P+G   L S S D+ +++W    G+         
Sbjct: 7   TPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKF-------- 57

Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGA 250
                                    +T     +SG    +  +A  +D  LL + + D  
Sbjct: 58  ------------------------EKT-----ISGHKLGISDVAWSSDSNLLVSASDDKT 88

Query: 251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCIQ 307
           +  W  +V++   +   +LKGHS  V          N + SGS D S+R+W+++T +C++
Sbjct: 89  LKIW--DVSS--GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLK 143

Query: 308 TLTEHTSVVMSL-LCWD-QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMP 365
           TL  H+  V ++    D   ++S S D   ++W  T SG    T   ++   V  +   P
Sbjct: 144 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-DTASGQCLKTLIDDDNPPVSFVKFSP 202

Query: 366 DSEGKPVLLCSCNDNSVRFYDLPS 389
           +  GK  +L +  DN+++ +D   
Sbjct: 203 N--GK-YILAATLDNTLKLWDYSK 223

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score =  105 bits (265), Expect = 5e-26
 Identities = 63/262 (24%), Positives = 113/262 (43%), Gaps = 53/262 (20%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
           W   DG K    + GH+  +S +   S S+ L S S D+T+++WD +SG+C         
Sbjct: 50  WGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT------ 102

Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA 253
                        G +N+V           + + P            L+ +G+ D ++  
Sbjct: 103 -----------LKGHSNYVFC--------CNFN-PQSN---------LIVSGSFDESVRI 133

Query: 254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTE 311
           W  +V T   +   +L  HS  V ++    +   + S S D   R+W+  + QC++TL +
Sbjct: 134 W--DVKTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 189

Query: 312 -HTSVVMSLLCWD---QFLLSCSLDKTIKVWFATDSGNLEVTYT-H-NEEHGVLALCGMP 365
                V   + +    +++L+ +LD T+K+W     G    TYT H NE++ + A   + 
Sbjct: 190 DDNPPVSF-VKFSPNGKYILAATLDNTLKLW-DYSKGKCLKTYTGHKNEKYCIFANFSVT 247

Query: 366 DSEGKPVLLCSCNDNSVRFYDL 387
              GK  ++    DN V  ++L
Sbjct: 248 G--GK-WIVSGSEDNLVYIWNL 266

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 97.9 bits (245), Expect = 3e-23
 Identities = 57/216 (26%), Positives = 85/216 (39%), Gaps = 52/216 (24%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
           W V  G K L  L  H   VS +     GS  + S S D   R+WD ASGQC   +    
Sbjct: 134 WDVKTG-KCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD- 190

Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAIL 252
                  + P +     +FV  ++           P G+          + A T D  + 
Sbjct: 191 -------DNPPV-----SFV-KFS-----------PNGK---------YILAATLDNTLK 217

Query: 253 AWKFNVTTNCFEPAASLKGHSLAVVSLVVGA-----NKLYSGSMDNSIRVWNLETLQCIQ 307
            W  + +    +   +  GH      +           + SGS DN + +WNL+T + +Q
Sbjct: 218 LW--DYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273

Query: 308 TLTEHTSVVMSLLCW---DQFLLSCSL--DKTIKVW 338
            L  HT VV+S       +  + S +L  DKTIK+W
Sbjct: 274 KLQGHTDVVIS-TACHPTENIIASAALENDKTIKLW 308

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 94.8 bits (237), Expect = 3e-22
 Identities = 49/266 (18%), Positives = 97/266 (36%), Gaps = 59/266 (22%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
           W V  G K L  L+GH   V        S+ + SGS DE+VR+WD  +G+C         
Sbjct: 92  WDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--------- 141

Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAI 251
                                   +T     L      V A+    D  L+ + + DG  
Sbjct: 142 -----------------------LKT-----LPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173

Query: 252 LAWKFNVTTNCFEPAASL-KGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQT 308
             W  +  +   +   +L    +  V  +    N   + + ++DN++++W+    +C++T
Sbjct: 174 RIW--DTASG--QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229

Query: 309 LTEHT----SVVMSLLCWD-QFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALC 362
            T H      +  +      ++++S S D  + +W    +  +      H     V++  
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW-NLQTKEIVQKLQGH--TDVVISTA 286

Query: 363 GMPDSEGKPVLLCS-CNDNSVRFYDL 387
             P      +   +  ND +++ +  
Sbjct: 287 CHPT--ENIIASAALENDKTIKLWKS 310

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  113 bits (285), Expect = 2e-27
 Identities = 35/261 (13%), Positives = 69/261 (26%), Gaps = 44/261 (16%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
           W +    +    + GH   V+        + L S S D T+R+WD  S      I     
Sbjct: 728 WDLNQK-ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSI----- 781

Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAI 251
                                     +++         V   +   D   +    ++  +
Sbjct: 782 -------------------NVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL 822

Query: 252 LAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTL 309
           L             A    GH   +                    + +WN+++   +   
Sbjct: 823 LFD----IHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC 878

Query: 310 TEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD 366
             H S V   + +       L+ S D+TI+VW  T                 + +    +
Sbjct: 879 RGHLSWVHG-VMFSPDGSSFLTASDDQTIRVW-ETKKVCKNSAIVL---KQEIDVVFQEN 933

Query: 367 SEGKPVLLCSCNDNSVRFYDL 387
                ++L   N   ++    
Sbjct: 934 ET---MVLAVDNIRGLQLIAG 951

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  112 bits (283), Expect = 3e-27
 Identities = 39/232 (16%), Positives = 72/232 (31%), Gaps = 51/232 (21%)

Query: 134  WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
              + +  ++ +   GH+K V  I   +    L S S+D  ++VW+  +G           
Sbjct: 988  IELPNN-RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY--------- 1037

Query: 194  VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAIL 252
                                         + L      V    +  D  L + + DG + 
Sbjct: 1038 -----------------------------VFLQAHQETVKDFRLLQDSRLLSWSFDGTVK 1068

Query: 253  AWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLT 310
             W  NV T           H   V+S  + ++  K  S S D + ++W+ + L  +  L 
Sbjct: 1069 VW--NVITG--RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK 1124

Query: 311  EHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVL 359
             H   V     +      L +   +  I++W     G L  +          
Sbjct: 1125 GHNGCVRC-SAFSLDGILLATGDDNGEIRIW-NVSDGQLLHSCAPISVEEGT 1174

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  100 bits (251), Expect = 5e-23
 Identities = 42/265 (15%), Positives = 80/265 (30%), Gaps = 68/265 (25%)

Query: 146 LEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWI 204
           +  H   V        G  ++ S   D+T++V+   +G+                     
Sbjct: 611 VRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD----------------- 652

Query: 205 FIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNC 262
                               +     +V   A  +D   +   + D  +  W  +  T  
Sbjct: 653 --------------------IKAHEDEVLCCAFSSDDSYIATCSADKKVKIW--DSATG- 689

Query: 263 FEPAASLKGHSLAVVSLVVGAN----KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMS 318
            +   +   HS  V             L +GS D  +++W+L   +C  T+  HT+ V  
Sbjct: 690 -KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH 748

Query: 319 LLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE-----------EHGVLALCGM 364
              +   D+ L SCS D T+++W    +   +                  E  V      
Sbjct: 749 -CRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS 807

Query: 365 PDSEGKPVLLCSCNDNSVRFYDLPS 389
            D +     +     N V  +D+ +
Sbjct: 808 ADGD----KIIVAAKNKVLLFDIHT 828

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score =  100 bits (250), Expect = 7e-23
 Identities = 34/217 (15%), Positives = 58/217 (26%), Gaps = 53/217 (24%)

Query: 134  WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
            W V  G ++      HQ  V    + S + K  S S D+T ++W                
Sbjct: 1070 WNVITG-RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE------ 1122

Query: 194  VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAI 251
                                           L G  G V   A   D  LL  G  +G I
Sbjct: 1123 -------------------------------LKGHNGCVRCSAFSLDGILLATGDDNGEI 1151

Query: 252  LAW-----KFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQ 304
              W     +   +            H   V  +    +   L S      ++ WN+ T  
Sbjct: 1152 RIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGD 1209

Query: 305  CIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVW 338
              QT   + + +   +      +  ++      + + 
Sbjct: 1210 SSQTFYTNGTNLKK-IHVSPDFRTYVTVDNLGILYIL 1245

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 97.6 bits (243), Expect = 4e-22
 Identities = 28/262 (10%), Positives = 64/262 (24%), Gaps = 61/262 (23%)

Query: 134  WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
            + +     L     GH   +      P              V +W+  S           
Sbjct: 824  FDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQYCVELWNIDSRLKVAD----- 877

Query: 193  EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGA 250
                                              G +  V+ +    D       + D  
Sbjct: 878  --------------------------------CRGHLSWVHGVMFSPDGSSFLTASDDQT 905

Query: 251  ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQT 308
            I  W       C     +        + +V   N   + +      +++   +T Q    
Sbjct: 906  IRVW--ETKKVC----KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYL 959

Query: 309  LTEH-TSVVMSLLCWD-QFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMP 365
                 +   +S      +++     D  IK+     +  +  +   H +   V  +    
Sbjct: 960  PEAQVSCCCLSP---HLEYVAFGDEDGAIKII-ELPNNRVFSSGVGHKK--AVRHIQFTA 1013

Query: 366  DSEGKPVLLCSCNDNSVRFYDL 387
            D +    L+ S  D+ ++ ++ 
Sbjct: 1014 DGK---TLISSSEDSVIQVWNW 1032

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 93.0 bits (231), Expect = 2e-20
 Identities = 42/279 (15%), Positives = 88/279 (31%), Gaps = 72/279 (25%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
           +    G + L  ++ H+  V      S    + + S D+ V++WD A+G+          
Sbjct: 642 FKAETG-EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT------ 694

Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFAGTQDG 249
                                                QV      N     LL  G+ D 
Sbjct: 695 -------------------------------YDEHSEQVNCCHFTNKSNHLLLATGSNDF 723

Query: 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQ 307
            +  W  ++     E   ++ GH+ +V       +   L S S D ++R+W++ +    +
Sbjct: 724 FLKLW--DLNQK--ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERK 779

Query: 308 TLT-------------EHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYT 351
           ++              +   +V     W      ++  + +K +     T SG L   +T
Sbjct: 780 SINVKRFFLSSEDPPEDVEVIVKC-CSWSADGDKIIVAAKNKVLLFDIHT-SGLLAEIHT 837

Query: 352 -HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
            H     +      P      + + + +   V  +++ S
Sbjct: 838 GH--HSTIQYCDFSPYDH---LAVIALSQYCVELWNIDS 871

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 83.7 bits (207), Expect = 1e-17
 Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 11/150 (7%)

Query: 244 AGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLE 301
                G +     N  T        ++ H+ AV       +  ++ S   D +++V+  E
Sbjct: 586 QEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAE 645

Query: 302 TLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGV 358
           T + +  +  H   V+       D ++ +CS DK +K+W +  +G L  TY  H     V
Sbjct: 646 TGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS-ATGKLVHTYDEH--SEQV 702

Query: 359 LALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
                        +LL +  ND  ++ +DL
Sbjct: 703 NCCHFTNK--SNHLLLATGSNDFFLKLWDL 730

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 19/133 (14%)

Query: 263 FEPAASLKGHS--LAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLL 320
            EP  S       L                   +I+  +         +  HT  V    
Sbjct: 569 CEPETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSR------LVVRPHTDAVYH-A 621

Query: 321 CW---DQFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLLCS 376
           C+    Q + SC  DKT++V+   ++G   +    H  E  VL      D     +  CS
Sbjct: 622 CFSQDGQRIASCGADKTLQVF-KAETGEKLLDIKAH--EDEVLCCAFSSD--DSYIATCS 676

Query: 377 CNDNSVRFYDLPS 389
             D  V+ +D  +
Sbjct: 677 -ADKKVKIWDSAT 688

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 4/45 (8%), Positives = 10/45 (22%), Gaps = 1/45 (2%)

Query: 134  WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD 178
            W V  G         +   +  I +        +      + +  
Sbjct: 1203 WNVATG-DSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQ 1246

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score =  112 bits (282), Expect = 5e-27
 Identities = 53/277 (19%), Positives = 99/277 (35%), Gaps = 39/277 (14%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGIT-LPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
           W        +  ++  +  V     +   +  +  GS D  +RV++  +G+         
Sbjct: 40  WNYETQ-VEVRSIQVTETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNTGEKVVD--FEA 95

Query: 193 EVGCMIS-----EGPWIFIGVT----NFVKAWNTQTNTDLS--LSGPVGQVYAMA---VG 238
               + S       P++   ++      VK WN + N  L     G    V  +A     
Sbjct: 96  HPDYIRSIAVHPTKPYV---LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152

Query: 239 NDLLFAGTQDGAILAWKFNVTTNCFEPAASL-KGHSLAVVSLV--VGANKLY--SGSMDN 293
                +G  D  +  W  ++  +   P  +L  G    V  +      +K Y  + S D 
Sbjct: 153 PSTFASGCLDRTVKVW--SLGQS--TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL 208

Query: 294 SIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTY 350
           +I++W+ +T  C+ TL  H S V     +      ++S S D T+K+W ++ +  +E T 
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSF-AVFHPTLPIIISGSEDGTLKIWNSS-TYKVEKTL 266

Query: 351 THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
                     +   P   G+   + S  DN      L
Sbjct: 267 NV-GLERSWCIATHPT--GRKNYIASGFDNGFTVLSL 300

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 95.9 bits (239), Expect = 1e-21
 Identities = 51/260 (19%), Positives = 86/260 (33%), Gaps = 63/260 (24%)

Query: 142 LLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISE 200
           +          V GI   P+    + +      V +W+  +                   
Sbjct: 5   IKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVE---------------- 47

Query: 201 GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV 258
                      V+          S+      V A         +  G+ D  I  +  N 
Sbjct: 48  -----------VR----------SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF--NY 84

Query: 259 TTNCFEPAASLKGHSLAVVSLVVGANKLY--SGSMDNSIRVWNLETLQCI-QTLTEHTSV 315
            T   E     + H   + S+ V   K Y  SGS D ++++WN E    + QT   H   
Sbjct: 85  NTG--EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142

Query: 316 VMSLLCW---D-QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH--GVLALC--GMPDS 367
           VM  + +   D     S  LD+T+KVW     G     +T       GV  +    +PD 
Sbjct: 143 VMC-VAFNPKDPSTFASGCLDRTVKVW---SLGQSTPNFTLTTGQERGVNYVDYYPLPD- 197

Query: 368 EGKPVLLCSCNDNSVRFYDL 387
             KP ++ + +D +++ +D 
Sbjct: 198 --KPYMITASDDLTIKIWDY 215

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 82.4 bits (204), Expect = 4e-17
 Identities = 39/266 (14%), Positives = 76/266 (28%), Gaps = 57/266 (21%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY--SGSKDETVRVWDCASGQCAGVINLG 191
           W++G      T   G ++ V+ +      DK Y  + S D T+++WD  +  C       
Sbjct: 168 WSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT---- 223

Query: 192 GEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDG 249
                                            L G +  V          ++ +G++DG
Sbjct: 224 ---------------------------------LEGHMSNVSFAVFHPTLPIIISGSEDG 250

Query: 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCI 306
            +  W  N +T  ++   +L         +     G     +   DN   V +L   +  
Sbjct: 251 TLKIW--NSST--YKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPT 306

Query: 307 QTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGN---LEVTYTHNEEHGVLALCG 363
            +L     +V S         S      I+     +      L+     + +    +L  
Sbjct: 307 LSLDPVGKLVWSGG--KNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAH 364

Query: 364 MPDSEGKPVLLCSCNDNSVRFYDLPS 389
            P+       +    D     Y   +
Sbjct: 365 SPNGR----FVTVVGDGEYVIYTALA 386

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 79.7 bits (197), Expect = 3e-16
 Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 17/153 (11%)

Query: 244 AGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLY--SGSMDNSIRVWNLE 301
                G +  W  N  T       S++     V +    A K +   GS D  IRV+N  
Sbjct: 30  TTLYSGRVEIW--NYETQ--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85

Query: 302 TLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHG 357
           T + +     H   + S +       ++LS S D T+K+W   ++  LE T+  H   H 
Sbjct: 86  TGEKVVDFEAHPDYIRS-IAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE--HF 142

Query: 358 VLALCGMPDSEGKPVLLCS-CNDNSVRFYDLPS 389
           V+ +   P  +       S C D +V+ + L  
Sbjct: 143 VMCVAFNP-KDPS--TFASGCLDRTVKVWSLGQ 172

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 69.0 bits (169), Expect = 8e-13
 Identities = 41/292 (14%), Positives = 80/292 (27%), Gaps = 80/292 (27%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
           W        +  LEGH   VS     P+    + SGS+D T+++W+ ++ +         
Sbjct: 213 WDYQTK-SCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVEK------ 264

Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAV---GNDLLFAGTQDG 249
                                          +L+  + + + +A    G     A   D 
Sbjct: 265 -------------------------------TLNVGLERSWCIATHPTGRKNYIASGFDN 293

Query: 250 AILAWKFNVTTNCFEPAASLKGHSLAVVS---LVVGANKLYSGSMDNSIRVWNLETLQ-C 305
                   +  +  EP  SL      V S       ++ +++  +  +  V   E L   
Sbjct: 294 GFTVLS--LGND--EPTLSLDPVGKLVWSGGKNAAASD-IFTAVIRGNEEVEQDEPLSLQ 348

Query: 306 IQTLTEHTSVVMSLLC--WDQFLLSCSLDKTIKVWFAT---------------------- 341
            + L        SL      +F+      + +                            
Sbjct: 349 TKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYA 408

Query: 342 --DSGNLEVTYTHNEEHGVLALCGMPDSEG--KPVLLCSCNDNSVRFYDLPS 389
             D       Y + +E    ++      +      LL   +D  V F+D  +
Sbjct: 409 LIDETGQIKYYKNFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDN 460

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 69.0 bits (169), Expect = 9e-13
 Identities = 30/275 (10%), Positives = 78/275 (28%), Gaps = 45/275 (16%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGIT-LPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
           W      K+   L    +    I   P+G     +   D    V    + +    ++  G
Sbjct: 255 WNSSTY-KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVG 313

Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNT------DLSLSGPVGQVYAMAV---GNDLLF 243
           ++     +        T  ++                 L        ++A    G  +  
Sbjct: 314 KLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTV 373

Query: 244 AGTQDGAI---LAWKFNVTTNCFEPAASLKGHSLAVVS--------------------LV 280
            G  +  I   LAW+      C +       +S A++                     + 
Sbjct: 374 VGDGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPMH 433

Query: 281 VGANKLYSGSM-----DNSIRVWNLETLQCIQTLTEH-TSVVMSLLCWD-QFLLSCSLDK 333
              ++L+SG++     D  +  ++ +    ++ +  +   V+ S    + + ++  + + 
Sbjct: 434 SAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAKDVIWSD---NGELVMIVNTNS 490

Query: 334 TIKVW-FATDSGNLEVTYTHNEEHGVLALCGMPDS 367
                   T   N +          +    G+ ++
Sbjct: 491 NGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEA 525

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 11/89 (12%), Positives = 33/89 (37%), Gaps = 11/89 (12%)

Query: 303 LQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGV 358
           L   +T +  +  V   + +   + ++L+      +++W   ++     +      E  V
Sbjct: 3   LDIKKTFSNRSDRVKG-IDFHPTEPWVLTTLYSGRVEIW-NYETQVEVRSIQVT--ETPV 58

Query: 359 LALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
            A   +     K  ++   +D  +R ++ 
Sbjct: 59  RAGKFIAR---KNWIIVGSDDFRIRVFNY 84

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score =  109 bits (274), Expect = 1e-26
 Identities = 49/213 (23%), Positives = 90/213 (42%), Gaps = 32/213 (15%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
           W V  G   +    GH++ V  +     G+  + S S D+TVRVW  A+ +C        
Sbjct: 219 WEVQTG-YCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAE----- 271

Query: 193 EVGCMISEGPWIFIGVTNFVK--AWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGA 250
                            + V+  +W  +++          +          L +G++D  
Sbjct: 272 ------------LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319

Query: 251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQT 308
           I  W  +V+T       +L GH   V  ++   G   + S + D ++RVW+ +  +C++T
Sbjct: 320 IKMW--DVSTG--MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT 375

Query: 309 LTEHTSVVMSLLCW---DQFLLSCSLDKTIKVW 338
           L  H   V S L +     ++++ S+D+T+KVW
Sbjct: 376 LNAHEHFVTS-LDFHKTAPYVVTGSVDQTVKVW 407

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score =  103 bits (260), Expect = 9e-25
 Identities = 57/268 (21%), Positives = 109/268 (40%), Gaps = 49/268 (18%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGIT-LPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG- 191
           W      + +  + GH   VS ++ +P+G D + S S+D+T+++W+  +G C      G 
Sbjct: 177 WDFQGF-ECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFT-GH 233

Query: 192 -GEVGCM-IS-EGPWIFIGVT----NFVKAWNTQTNTDLS-LSGPVGQVYAMAVGNDLLF 243
              V  +  + +G  I    +      V+ W   T    + L      V  ++      +
Sbjct: 234 REWVRMVRPNQDGTLI---ASCSNDQTVRVWVVATKECKAELREHRHVVECIS------W 284

Query: 244 AGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETL 303
           A   + +  +      +      +   G  L             SGS D +I++W++ T 
Sbjct: 285 A--PESSYSSISEATGSET--KKSGKPGPFLL------------SGSRDKTIKMWDVSTG 328

Query: 304 QCIQTLTEHTSVVMSLLCW--D-QFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVL 359
            C+ TL  H + V   + +    +F+LSC+ DKT++VW    +     T   H  EH V 
Sbjct: 329 MCLMTLVGHDNWVRG-VLFHSGGKFILSCADDKTLRVW-DYKNKRCMKTLNAH--EHFVT 384

Query: 360 ALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
           +L     +   P ++    D +V+ ++ 
Sbjct: 385 SLDFHKTA---PYVVTGSVDQTVKVWEC 409

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score =  103 bits (258), Expect = 1e-24
 Identities = 53/235 (22%), Positives = 90/235 (38%), Gaps = 53/235 (22%)

Query: 141 KLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS 199
                L GH+  V+ +   P  S  + S S+D T++VWD  +G                 
Sbjct: 99  PEKYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDF--------------- 142

Query: 200 EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN 257
                             +T     L G    V  ++  +   LL + + D  I  W  +
Sbjct: 143 -----------------ERT-----LKGHTDSVQDISFDHSGKLLASCSADMTIKLW--D 178

Query: 258 VTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSV 315
                FE   ++ GH   V S+ +    + + S S D +I++W ++T  C++T T H   
Sbjct: 179 FQG--FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW 236

Query: 316 VMSL-LCWD-QFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDS 367
           V  +    D   + SCS D+T++VW    +   +     H   H V  +   P+S
Sbjct: 237 VRMVRPNQDGTLIASCSNDQTVRVW-VVATKECKAELREH--RHVVECISWAPES 288

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score =   99 bits (250), Expect = 2e-23
 Identities = 64/280 (22%), Positives = 99/280 (35%), Gaps = 73/280 (26%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
           W    G      L+GH   V  I+       L S S D T+++WD    +C         
Sbjct: 135 WDYETG-DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT------ 187

Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA 253
                        G  + V +        +S+  P G           + + ++D  I  
Sbjct: 188 -----------MHGHDHNVSS--------VSIM-PNGD---------HIVSASRDKTIKM 218

Query: 254 WKFNVTT-NCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLT 310
           W   V T  C +      GH   V  +    +   + S S D ++RVW + T +C   L 
Sbjct: 219 W--EVQTGYCVKT---FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 273

Query: 311 EHTSVVMS-----------LLCWD-----------QFLLSCSLDKTIKVWFATDSGNLEV 348
           EH  VV             +                FLLS S DKTIK+W    +G   +
Sbjct: 274 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW-DVSTGMCLM 332

Query: 349 TYT-HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
           T   H  ++ V  +       GK +L C+ +D ++R +D 
Sbjct: 333 TLVGH--DNWVRGVLFHSG--GKFILSCA-DDKTLRVWDY 367

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 91.1 bits (227), Expect = 2e-20
 Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 21/187 (11%)

Query: 212 VKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASL 269
            K W  +     +LSG    V  +       ++ + ++D  I  W  +  T   +   +L
Sbjct: 91  PKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW--DYETG--DFERTL 146

Query: 270 KGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQ 324
           KGH+ +V  +    +   L S S D +I++W+ +  +CI+T+  H   V S +       
Sbjct: 147 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSS-VSIMPNGD 205

Query: 325 FLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLLCSC-NDNSV 382
            ++S S DKTIK+W    +G    T+T H E   V  +    D  G   L+ SC ND +V
Sbjct: 206 HIVSASRDKTIKMW-EVQTGYCVKTFTGHREW--VRMVRPNQD--GT--LIASCSNDQTV 258

Query: 383 RFYDLPS 389
           R + + +
Sbjct: 259 RVWVVAT 265

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 63.8 bits (156), Expect = 3e-11
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 14/105 (13%)

Query: 288 SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSG 344
                   + W          L+ H S V   + +      ++S S D TIKVW   ++G
Sbjct: 84  PLGQKRDPKEWIPRP-PEKYALSGHRSPVTR-VIFHPVFSVMVSASEDATIKVW-DYETG 140

Query: 345 NLEVTYT-HNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
           + E T   H     V  +      +    LL SC  D +++ +D 
Sbjct: 141 DFERTLKGH--TDSVQDISFDHSGK----LLASCSADMTIKLWDF 179

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  110 bits (277), Expect = 2e-26
 Identities = 36/269 (13%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
           W +  G       + H  +++GI   +    L++ S D+ ++V             +  +
Sbjct: 351 WDISTGISNRVFPDVHATMITGIKT-TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANK 409

Query: 194 VGCMI------SEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQ 247
           +          ++G          +  ++    T++ +S     V A++     +  G Q
Sbjct: 410 LSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCV-ALSNDKQFVAVGGQ 468

Query: 248 DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQC 305
           D  +  +   ++            H   + S+    N   L +      +  +++     
Sbjct: 469 DSKVHVY--KLSGA-SVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE 525

Query: 306 I---QTLTEHTSVVMSLLCW--D-QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVL 359
           +    + T HT+ V  +  W  D   L + SLD ++ VW      +  +          +
Sbjct: 526 LAHTNSWTFHTAKVACV-SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSV 584

Query: 360 ALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388
                 +     ++     D++++F+++P
Sbjct: 585 NSVIWLN--ETTIVSAG-QDSNIKFWNVP 610

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score =  106 bits (267), Expect = 3e-25
 Identities = 39/270 (14%), Positives = 89/270 (32%), Gaps = 29/270 (10%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-- 191
                G  +     GH K ++ ++  +    L+S   +  +  WD ++G    V      
Sbjct: 309 VNPELG-SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA 367

Query: 192 GEVGCM-ISEGPWIF-IGVTNFVKAWNTQTNTDLSLSGPV----GQVYAMAVGND-LLFA 244
             +  +  +    +F +   + +K      +   S          Q   +AV  D  +  
Sbjct: 368 TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV 427

Query: 245 GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQ 304
                 I  +      +  +       ++ + V+L      +  G  D+ + V+ L    
Sbjct: 428 AACYKHIAIY------SHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS 481

Query: 305 CIQ-TLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYT---HNEEHG 357
             +     H + + S + +     FL++    + +  +   ++  L  T +   H     
Sbjct: 482 VSEVKTIVHPAEITS-VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHT--AK 538

Query: 358 VLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
           V  +   PD     +   S  DNSV  +++
Sbjct: 539 VACVSWSPD--NVRLATGS-LDNSVIVWNM 565

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 98.0 bits (245), Expect = 3e-22
 Identities = 55/273 (20%), Positives = 94/273 (34%), Gaps = 56/273 (20%)

Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGV 187
           +F H +    G      L G  + ++ +   PS   ++ SGS D TV +++    +    
Sbjct: 127 RFGHVFLFDTG-TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST 185

Query: 188 INLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFA-GT 246
                                T FV          +  + P G           LFA   
Sbjct: 186 FG-----------------EHTKFV--------HSVRYN-PDGS----------LFASTG 209

Query: 247 QDGAILAWKFNVTT-----NCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWN 299
            DG I+ +  N           + +     HS +V  L    +  K+ S S D +I++WN
Sbjct: 210 GDGTIVLY--NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267

Query: 300 LETLQCIQTLTE-HTSVVMSLLC-WD-QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH 356
           + TL+  +T+          L   W  Q L+S S +  I           +V Y HN   
Sbjct: 268 VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHN--K 325

Query: 357 GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
            + AL    D +    L  +  +  +  +D+ +
Sbjct: 326 AITALSSSADGK---TLFSADAEGHINSWDIST 355

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 96.1 bits (240), Expect = 9e-22
 Identities = 43/260 (16%), Positives = 72/260 (27%), Gaps = 50/260 (19%)

Query: 137 GDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG 195
           G  FK  +    H K V  +   P GS    S   D T+ +++   G   GV        
Sbjct: 177 GPPFKFKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLK- 234

Query: 196 CMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILA 253
                                             G V+ +    D   + + + D  I  
Sbjct: 235 -----------------------------NVAHSGSVFGLTWSPDGTKIASASADKTIKI 265

Query: 254 WKFNVTTNCFEPAASLK-GHSLAVVSLVVGANK--LYSGSMDNSIRVWNLETLQCIQTLT 310
           W  NV T   +   ++  G  +    L +   K  L S S +  I   N E     Q   
Sbjct: 266 W--NVATL--KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY 321

Query: 311 EHTSVVMSLLCWD---QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDS 367
            H   + + L      + L S   +  I  W    +G     +       +  +      
Sbjct: 322 GHNKAITA-LSSSADGKTLFSADAEGHINSW-DISTGISNRVFPDVHATMITGIKTTSKG 379

Query: 368 EGKPVLLCSCNDNSVRFYDL 387
           +    L     D+ ++    
Sbjct: 380 D----LFTVSWDDHLKVVPA 395

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 93.0 bits (232), Expect = 1e-20
 Identities = 46/266 (17%), Positives = 88/266 (33%), Gaps = 57/266 (21%)

Query: 134 WTVGDGFKLLT------QLEGHQKVVSGIT-LPSGSDKLYSGSKDETVRVWDCASGQCAG 186
           +   DG K         +   H   V G+T  P G+ K+ S S D+T+++W+ A+ +   
Sbjct: 217 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEK 275

Query: 187 VINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGT 246
            I +G                                       Q+  +      L + +
Sbjct: 276 TIPVGT---------------------------------RIEDQQL-GIIWTKQALVSIS 301

Query: 247 QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQ 304
            +G I     N             GH+ A+ +L   A+   L+S   +  I  W++ T  
Sbjct: 302 ANGFINFV--NPELG--SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357

Query: 305 CIQTLTE-HTSVVMSL-LCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHG--VLA 360
             +   + H +++  +       L + S D  +KV  A  SG ++ +     +     L 
Sbjct: 358 SNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG-VDSSKAVANKLSSQPLG 416

Query: 361 LCGMPDSEGKPVLLCSCNDNSVRFYD 386
           L    D +    +  +     +  Y 
Sbjct: 417 LAVSADGD----IAVAACYKHIAIYS 438

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 91.5 bits (228), Expect = 4e-20
 Identities = 48/255 (18%), Positives = 79/255 (30%), Gaps = 52/255 (20%)

Query: 145 QLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPW 203
               H    +     PSG     SG     VR+WD           L             
Sbjct: 54  IYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHI----LKTT---------- 98

Query: 204 IFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCF 263
                +  V         D+S      +  A AVG        ++     +     T   
Sbjct: 99  -IPVFSGPV--------KDISWD-SESKRIA-AVGEG------RERFGHVF--LFDTG-- 137

Query: 264 EPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLL 320
               +L G + A+ S+        ++ SGS DN++ ++     +   T  EHT  V S +
Sbjct: 138 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS-V 196

Query: 321 CW---DQFLLSCSLDKTIKVWFATDS---GNLEVTYTHNEEH--GVLALCGMPDSEGKPV 372
            +        S   D TI ++   D    G  E     N  H   V  L   PD      
Sbjct: 197 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT---K 253

Query: 373 LLCSCNDNSVRFYDL 387
           +  +  D +++ +++
Sbjct: 254 IASASADKTIKIWNV 268

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 87.3 bits (217), Expect = 8e-19
 Identities = 35/263 (13%), Positives = 72/263 (27%), Gaps = 60/263 (22%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGIT-LPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
           W V       T   G +     +  + +    L S S +  +   +   G    V     
Sbjct: 266 WNVATLKVEKTIPVGTRIEDQQLGIIWTK-QALVSISANGFINFVNPELGSIDQV----- 319

Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGA 250
                                             G    + A++   D   LF+   +G 
Sbjct: 320 --------------------------------RYGHNKAITALSSSADGKTLFSADAEGH 347

Query: 251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN-KLYSGSMDNSIRVWNLET---LQCI 306
           I +W  +++T           H+  +  +   +   L++ S D+ ++V            
Sbjct: 348 INSW--DISTG-ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSK 404

Query: 307 QTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGM 364
               + +S  +  L    D  +   +  K I ++     G L         +    +   
Sbjct: 405 AVANKLSSQPLG-LAVSADGDIAVAACYKHIAIY---SHGKLTEV---PISYNSSCVALS 457

Query: 365 PDSEGKPVLLCSCNDNSVRFYDL 387
            D +    +     D+ V  Y L
Sbjct: 458 NDKQ---FVAVGGQDSKVHVYKL 477

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 69.5 bits (171), Expect = 5e-13
 Identities = 26/174 (14%), Positives = 58/174 (33%), Gaps = 27/174 (15%)

Query: 230 GQVYAMAV---GNDLLFA-GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK 285
           G    +     G+ + +  GT    +     ++T            HS          + 
Sbjct: 19  GTAVVLGNTPAGDKIQYCNGTSVYTVPVG--SLTD-----TEIYTEHSHQTTVAKTSPSG 71

Query: 286 LY--SGSMDNSIRVWNLETLQCI--QTLTEHTSVVMSLLCWD---QFLLSCSL--DKTIK 336
            Y  SG +  ++R+W+      I   T+   +  V  +  WD   + + +     ++   
Sbjct: 72  YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI-SWDSESKRIAAVGEGRERFGH 130

Query: 337 VWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
           V+   D+G      T       + ++   P       ++   +DN+V  ++ P 
Sbjct: 131 VFLF-DTGTSNGNLTGQ--ARAMNSVDFKPS--RPFRIISGSDDNTVAIFEGPP 179

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 64.9 bits (159), Expect = 1e-11
 Identities = 34/266 (12%), Positives = 65/266 (24%), Gaps = 79/266 (29%)

Query: 142 LLTQLEGHQKVVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGVINLGGEVGCMISE 200
           L     G   V+     P+G    Y +G+   TV V      +                 
Sbjct: 13  LPRTARGTAVVLGN--TPAGDKIQYCNGTSVYTVPVGSLTDTEI---------------- 54

Query: 201 GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV 258
                                    +    Q              +G   G +  W  + 
Sbjct: 55  ------------------------YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIW--DT 88

Query: 259 TTNCFEPAASLKGHSLAVVS---------LVVGANKLYSGSMDNSIRVWNLETLQCIQTL 309
           T        ++   S  V           +            +    V+  +T      L
Sbjct: 89  TQTTHILKTTIPVFSGPVKDISWDSESKRIAAV-----GEGRERFGHVFLFDTGTSNGNL 143

Query: 310 TEHTSVVMSLLCWDQF-------LLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLAL 361
           T     + S+     F       ++S S D T+ ++        + T+  H     V ++
Sbjct: 144 TGQARAMNSV----DFKPSRPFRIISGSDDNTVAIF-EGPPFKFKSTFGEH--TKFVHSV 196

Query: 362 CGMPDSEGKPVLLCSCNDNSVRFYDL 387
              PD     +   +  D ++  Y+ 
Sbjct: 197 RYNPDGS---LFASTGGDGTIVLYNG 219

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score =  106 bits (267), Expect = 3e-26
 Identities = 50/261 (19%), Positives = 89/261 (34%), Gaps = 61/261 (23%)

Query: 141 KLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS 199
             +   +GH  +V   TL   G+    S S D+T+R+WD A+G+                
Sbjct: 56  VPVRSFKGHSHIVQDCTLTADGA-YALSASWDKTLRLWDVATGETYQ------------- 101

Query: 200 EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVT 259
                F+G  + V +        + +               ++ +G++D  I  W   + 
Sbjct: 102 ----RFVGHKSDVMS--------VDID-KKAS---------MIISGSRDKTIKVW--TIK 137

Query: 260 TNCFEPAASLKGHSLAVVSLVVGANKLY--------SGSMDNSIRVWNLETLQCIQTLTE 311
             C      L GH+  V  + V  N+          S   D  ++ WNL   Q       
Sbjct: 138 GQCLAT---LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG 194

Query: 312 HTSVVMSLLCW--D-QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE 368
           H S + + L    D   + S   D  I +W   +    +  YT + +  V +L   P+  
Sbjct: 195 HNSNINT-LTASPDGTLIASAGKDGEIMLW---NLAAKKAMYTLSAQDEVFSLAFSPNRY 250

Query: 369 GKPVLLCSCNDNSVRFYDLPS 389
                L +     ++ + L  
Sbjct: 251 ----WLAAATATGIKVFSLDP 267

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 91.0 bits (227), Expect = 9e-21
 Identities = 58/259 (22%), Positives = 93/259 (35%), Gaps = 55/259 (21%)

Query: 142 LLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISE 200
           L   LEGH   V+ +       + L S S+D+T+  W               + G  +  
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ--------KFGVPVR- 59

Query: 201 GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTT 260
               F G ++ V         D +L+   G             + + D  +  W  +V T
Sbjct: 60  ---SFKGHSHIV--------QDCTLT-ADGA---------YALSASWDKTLRLW--DVAT 96

Query: 261 NCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMS 318
              E      GH   V+S+ +      + SGS D +I+VW ++  QC+ TL  H   V  
Sbjct: 97  G--ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQ 153

Query: 319 -------LLCWD-QFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEG 369
                      D   ++S   DK +K W       +E  +  HN    +  L   PD  G
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLN-QFQIEADFIGHN--SNINTLTASPD--G 208

Query: 370 KPVLLCSC-NDNSVRFYDL 387
              L+ S   D  +  ++L
Sbjct: 209 T--LIASAGKDGEIMLWNL 225

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 82.2 bits (204), Expect = 1e-17
 Identities = 40/219 (18%), Positives = 67/219 (30%), Gaps = 65/219 (29%)

Query: 141 KLLTQLEGHQKVVSGITL-PSGSDK-----LYSGSKDETVRVWDCASGQCAGVINLGGEV 194
           + L  L GH   VS + + P+         + S   D+ V+ W+    Q           
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD------- 191

Query: 195 GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAIL 252
                                           G    +  +    D  L+ +  +DG I+
Sbjct: 192 ------------------------------FIGHNSNINTLTASPDGTLIASAGKDGEIM 221

Query: 253 AWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLT 310
            W  N+     +   +L      V SL    N   L + +    I+V++L+    +  L 
Sbjct: 222 LW--NLAAK--KAMYTLSAQD-EVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLR 275

Query: 311 E--------HTSVVMSLLCW--D-QFLLSCSLDKTIKVW 338
                         +S L W  D Q L +   D  I+VW
Sbjct: 276 PEFAGYSKAAEPHAVS-LAWSADGQTLFAGYTDNVIRVW 313

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 80.3 bits (199), Expect = 5e-17
 Identities = 54/270 (20%), Positives = 100/270 (37%), Gaps = 58/270 (21%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
           W V  G +   +  GH+  V  + +    S  + SGS+D+T++VW    GQC        
Sbjct: 92  WDVATG-ETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWT-IKGQCLAT----- 143

Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAIL 252
                        +G  ++V          + +  P  +       +  + +   D  + 
Sbjct: 144 ------------LLGHNDWVSQ--------VRVV-PNEKADD---DSVTIISAGNDKMVK 179

Query: 253 AWKFNVTTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCIQTL 309
           AW  N+    F+  A   GH+  + +L     G   + S   D  I +WNL   + + TL
Sbjct: 180 AW--NLNQ--FQIEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAMYTL 234

Query: 310 TEHTSVVMSLLCW--D-QFLLSCSLDKTIKVWFATDSGNLEVTYT-----HNEEHG--VL 359
           +     V S L +  +  +L + +    IKV+   D   L          +++      +
Sbjct: 235 SAQDE-VFS-LAFSPNRYWLAAAT-ATGIKVFSL-DPQYLVDDLRPEFAGYSKAAEPHAV 290

Query: 360 ALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
           +L    D  G+  L     DN +R + + +
Sbjct: 291 SLAWSAD--GQ-TLFAGYTDNVIRVWQVMT 317

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score =  107 bits (270), Expect = 4e-26
 Identities = 43/272 (15%), Positives = 80/272 (29%), Gaps = 41/272 (15%)

Query: 141 KLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS 199
            LL  L  H+  +  +     G+  + S   +    +W+  SG          +     S
Sbjct: 140 ALLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGTVMQH--FELKETGGSS 196

Query: 200 EGPWIFIGVTNFV--------------------KAWNTQTNTDL-SLSGPVGQVYAMAVG 238
                  G  +                        +     T    L G  G +  +   
Sbjct: 197 INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN 256

Query: 239 ND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN-KLYSGSMDNSI 295
           +   LL + + DG +  W  +             GHS ++VS     + K+ S SMD S+
Sbjct: 257 DTNKLLLSASDDGTLRIW--HGGNG--NSQNCFYGHSQSIVSASWVGDDKVISCSMDGSV 312

Query: 296 RVWNLETLQCIQTLTEHTSVVMSLLCW--D-QFLLSCSLDKTIKVWFATDSGNLEVTYT- 351
           R+W+L+    +         + +      D Q      +D  + V+      +   +   
Sbjct: 313 RLWSLKQNTLLALSIVDGVPIFA-GRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYG 371

Query: 352 HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVR 383
           +    G+L    +P            ND    
Sbjct: 372 N--RDGILNPLPIPL--YASYQSSQDNDYIFD 399

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 91.6 bits (228), Expect = 2e-20
 Identities = 35/238 (14%), Positives = 77/238 (32%), Gaps = 52/238 (21%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
           + + +      +L GH   +S +    +    L S S D T+R+W   +G          
Sbjct: 232 YQITEK-TPTGKLIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNGNSQNC----- 284

Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAI 251
                                             G    + + +   D  + + + DG++
Sbjct: 285 --------------------------------FYGHSQSIVSASWVGDDKVISCSMDGSV 312

Query: 252 LAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCI-QT 308
             W  ++  N     A      + + +  +  +  K     MD  + V++L+ L    ++
Sbjct: 313 RLW--SLKQN--TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRS 368

Query: 309 LTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCG 363
           L  +   +++ L       +  S   D    + +      + V Y+   E  V+A+ G
Sbjct: 369 LYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQ-EGSVVAIPG 425

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 87.7 bits (218), Expect = 3e-19
 Identities = 43/285 (15%), Positives = 88/285 (30%), Gaps = 58/285 (20%)

Query: 120 GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWD 178
            +    +  K      +   F L          V+ +     G+  + +G ++  +R+W+
Sbjct: 78  TDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN-SIVTGVENGELRLWN 136

Query: 179 CASGQCAGVINLGGEVGCMIS-----EGPWIFIGVT----NFVKAWNTQTNTDLSLSGPV 229
             +G    V  L      ++S     +G  I   ++    N    WN  +          
Sbjct: 137 -KTGALLNV--LNFHRAPIVSVKWNKDGTHI---ISMDVENVTILWNVIS---------- 180

Query: 230 GQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN-KLYS 288
           G V       +                ++                  V +    + K   
Sbjct: 181 GTVMQHFELKE------------TGGSSINAENHSG------DGSLGVDVEWVDDDKFVI 222

Query: 289 GSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVWFATDSGN 345
                +I V+ +        L  H   +   L ++   + LLS S D T+++W    +GN
Sbjct: 223 PGPKGAIFVYQITEKTPTGKLIGHHGPISV-LEFNDTNKLLLSASDDGTLRIWHGG-NGN 280

Query: 346 LEVTYT-HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
            +  +  H     +++   + D   K  ++    D SVR + L  
Sbjct: 281 SQNCFYGH--SQSIVSASWVGD--DK--VISCSMDGSVRLWSLKQ 319

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score =  107 bits (269), Expect = 5e-26
 Identities = 52/249 (20%), Positives = 100/249 (40%), Gaps = 31/249 (12%)

Query: 159 PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-----VGCMISEGPWIFIG-VTNFV 212
            S  + + + + +  V VW+  SG  + +           V     +G ++ +G     V
Sbjct: 101 WSNLN-VVAVALERNVYVWNADSGSVSALAETDESTYVASVKW-SHDGSFLSVGLGNGLV 158

Query: 213 KAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKG 271
             ++ ++ T L +++G   +V  ++    +L +G++ GAI      +  +       L+G
Sbjct: 159 DIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGT---LQG 215

Query: 272 HSLAVVSLVVGANKLY--SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFL 326
           HS  V  L   ++ L   SG  DN +++W+  +     T T H + V + + W      L
Sbjct: 216 HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA-VAWCPWQSNL 274

Query: 327 L---SCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC---NDN 380
           L     ++DK I  W    +G    T        V +L   P S+     + S     DN
Sbjct: 275 LATGGGTMDKQIHFW-NAATGARVNTVDAG--SQVTSLIWSPHSK----EIMSTHGFPDN 327

Query: 381 SVRFYDLPS 389
           ++  +   S
Sbjct: 328 NLSIWSYSS 336

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 83.4 bits (207), Expect = 7e-18
 Identities = 44/218 (20%), Positives = 73/218 (33%), Gaps = 55/218 (25%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
             V      +  L+GH   V G+     G  +L SG  D  V++WD  S           
Sbjct: 201 HDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDARSSIP-------- 251

Query: 193 EVGCMISEGPWIFIGVTNFVK--AWNT-QTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDG 249
                     +        VK  AW   Q+N   +  G                  T D 
Sbjct: 252 ---------KFTKTNHNAAVKAVAWCPWQSNLLATGGG------------------TMDK 284

Query: 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYS--GSMDNSIRVWNLETLQC 305
            I  W  N  T       ++   S  V SL+    + ++ S  G  DN++ +W+  +   
Sbjct: 285 QIHFW--NAATG--ARVNTVDAGS-QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL 339

Query: 306 IQ--TLTEHTSVVMSLLCW--D-QFLLSCSLDKTIKVW 338
            +   +  H + V+       D + L + + D+ +K W
Sbjct: 340 TKQVDIPAHDTRVLYS-ALSPDGRILSTAASDENLKFW 376

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 72.3 bits (178), Expect = 4e-14
 Identities = 24/192 (12%), Positives = 56/192 (29%), Gaps = 43/192 (22%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLY--SGSKDETVRVWDCASGQCAGVINL 190
           W              H   V  +   P  S+ L    G+ D+ +  W+ A+G     ++ 
Sbjct: 244 WDARSS-IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA 302

Query: 191 GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGA 250
           G +V  +                 W+  +   +S  G                    D  
Sbjct: 303 GSQVTSL----------------IWSPHSKEIMSTHG------------------FPDNN 328

Query: 251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQT 308
           +  W    +++       +  H   V+   +  +   L + + D +++ W +     ++ 
Sbjct: 329 LSIWS--YSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR 386

Query: 309 LTE-HTSVVMSL 319
                 +   S+
Sbjct: 387 PIPITKTPSSSI 398

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score =  104 bits (262), Expect = 2e-25
 Identities = 48/264 (18%), Positives = 97/264 (36%), Gaps = 59/264 (22%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
           W + +G K +  ++        +   P     L +G+    V ++   SG+         
Sbjct: 107 WDLENG-KQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYS----- 159

Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGA 250
                                           L      + ++A   D   L +G  DG 
Sbjct: 160 --------------------------------LDTRGKFILSIAYSPDGKYLASGAIDGI 187

Query: 251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQT 308
           I  +  ++ T   +   +L+GH++ + SL    +   L + S D  I++++++      T
Sbjct: 188 INIF--DIATG--KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT 243

Query: 309 LTEHTSVVMSLLCW--D-QFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGM 364
           L+ H S V++ + +  D    +S S DK++KVW    +     T+  H  +  V  +   
Sbjct: 244 LSGHASWVLN-VAFCPDDTHFVSSSSDKSVKVWDV-GTRTCVHTFFDH--QDQVWGVKYN 299

Query: 365 PDSEGKPVLLCSCNDNSVRFYDLP 388
            +  G  ++    +D  +  YD P
Sbjct: 300 GN--GSKIVSVG-DDQEIHIYDCP 320

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score =  103 bits (259), Expect = 4e-25
 Identities = 58/263 (22%), Positives = 94/263 (35%), Gaps = 57/263 (21%)

Query: 134 WTVGDG-FKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLG 191
           W   D    L   LEGHQ  V  + +  +      S S D  +R+WD  +G+        
Sbjct: 63  WKWRDERLDLQWSLEGHQLGVVSVDISHTLP-IAASSSLDAHIRLWDLENGKQIKS---- 117

Query: 192 GEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAI 251
                                          L+ S P  Q          L  GT  G +
Sbjct: 118 -------------IDAGPVDAWT--------LAFS-PDSQ---------YLATGTHVGKV 146

Query: 252 LAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTL 309
             +   V +   +   SL      ++S+    +   L SG++D  I ++++ T + + TL
Sbjct: 147 NIF--GVESG--KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 202

Query: 310 TEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMP 365
             H   + S L +    Q L++ S D  IK++      NL  T + H     VL +   P
Sbjct: 203 EGHAMPIRS-LTFSPDSQLLVTASDDGYIKIY-DVQHANLAGTLSGH--ASWVLNVAFCP 258

Query: 366 DSEGKPVLLCSC-NDNSVRFYDL 387
           D         S  +D SV+ +D+
Sbjct: 259 D--DT--HFVSSSSDKSVKVWDV 277

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score =  101 bits (254), Expect = 2e-24
 Identities = 43/269 (15%), Positives = 95/269 (35%), Gaps = 61/269 (22%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGS---DKLYSGSKDETVRVWDCASGQCAGVIN 189
            T   G  L  Q + H   +  +    +     + + +GS D+ V+VW     +      
Sbjct: 17  GTNQYG-ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ-- 73

Query: 190 LGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ 247
                                             SL G    V ++ + +   +  + + 
Sbjct: 74  ---------------------------------WSLEGHQLGVVSVDISHTLPIAASSSL 100

Query: 248 DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQC 305
           D  I  W  ++     +   S+    +   +L    +   L +G+    + ++ +E+ + 
Sbjct: 101 DAHIRLW--DLENG--KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 156

Query: 306 IQTLTEHTSVVMSLLCW--D-QFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLAL 361
             +L      ++S + +  D ++L S ++D  I ++    +G L  T   H     + +L
Sbjct: 157 EYSLDTRGKFILS-IAYSPDGKYLASGAIDGIINIF-DIATGKLLHTLEGH--AMPIRSL 212

Query: 362 CGMPDSEGKPVLLCSC-NDNSVRFYDLPS 389
              PDS+    LL +  +D  ++ YD+  
Sbjct: 213 TFSPDSQ----LLVTASDDGYIKIYDVQH 237

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 93.7 bits (234), Expect = 1e-21
 Identities = 35/242 (14%), Positives = 75/242 (30%), Gaps = 68/242 (28%)

Query: 165 LYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLS 224
            +  S++          G                                          
Sbjct: 5   HHHSSRENLYFQGTNQYGILFKQ------------------------------------- 27

Query: 225 LSGPVGQVYAMAVGNDLLFAGTQDGAILA----------WKFNVTTNCFEPAASLKGHSL 274
                  ++++A G +      ++   +           W         +   SL+GH L
Sbjct: 28  EQAHDDAIWSVAWGTN----KKENSETVVTGSLDDLVKVW--KWRDERLDLQWSLEGHQL 81

Query: 275 AVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSC 329
            VVS+ +        S S+D  IR+W+LE  + I+++        + L +    Q+L + 
Sbjct: 82  GVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT-LAFSPDSQYLATG 140

Query: 330 SLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
           +    + ++   +SG  E +         +L++   PD +     L S   D  +  +D+
Sbjct: 141 THVGKVNIF-GVESGKKEYSLDTRG--KFILSIAYSPDGK----YLASGAIDGIINIFDI 193

Query: 388 PS 389
            +
Sbjct: 194 AT 195

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score =  106 bits (266), Expect = 5e-25
 Identities = 54/255 (21%), Positives = 90/255 (35%), Gaps = 53/255 (20%)

Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISE 200
               +L GH   V  + L S      SGS D  +R+WD A+G                  
Sbjct: 421 VAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRR------------- 467

Query: 201 GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTT 260
               F+G T  V +        ++ S    +          + + ++D  I  W  N   
Sbjct: 468 ----FVGHTKDVLS--------VAFS-LDNR---------QIVSASRDRTIKLW--NTLG 503

Query: 261 NCFEP-AASLKGHSLAVVSLVV---GANK-LYSGSMDNSIRVWNLETLQCIQTLTEHTSV 315
            C    +   +GH   V  +          + S S D +++VWNL   +   TL  HT  
Sbjct: 504 ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGY 563

Query: 316 VMSLLCW--D-QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPV 372
           V + +    D     S   D  + +W   D    +  Y+      + ALC  P+      
Sbjct: 564 VST-VAVSPDGSLCASGGKDGVVLLW---DLAEGKKLYSLEANSVIHALCFSPNRY---- 615

Query: 373 LLCSCNDNSVRFYDL 387
            LC+  ++ ++ +DL
Sbjct: 616 WLCAATEHGIKIWDL 630

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 97.4 bits (243), Expect = 4e-22
 Identities = 50/281 (17%), Positives = 102/281 (36%), Gaps = 32/281 (11%)

Query: 129 KFLHSWTV-GDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187
           +FL ++ +  +G + +       K +  + L S  ++L    +     + +   G+    
Sbjct: 278 EFLENYLLTDEGLEAV----NKDKPLGAVALKSYEEELAKDPRI-AATMENAQKGEIMPN 332

Query: 188 INLGGEVGCMISEGPWIFIG--------VTNFVKAWNTQTNTDLSLSGPVGQVYAMAV-- 237
           I         +                 +               ++      V A+A   
Sbjct: 333 IPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPI 392

Query: 238 -GNDLLFAGTQDGAILAWKFNVT-TNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDN 293
              D++ + ++D +I+ WK              L GHS  V  +V+ ++     SGS D 
Sbjct: 393 DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452

Query: 294 SIRVWNLETLQCIQTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVWFATDSGNLEVTY 350
            +R+W+L      +    HT  V+S + +    + ++S S D+TIK+W     G  + T 
Sbjct: 453 ELRLWDLAAGVSTRRFVGHTKDVLS-VAFSLDNRQIVSASRDRTIKLWNTL--GECKYTI 509

Query: 351 THNEE---HGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
           +   E     V  +   P+       + S   D +V+ ++L
Sbjct: 510 SEGGEGHRDWVSCVRFSPN--TLQPTIVSASWDKTVKVWNL 548

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 47/227 (20%), Positives = 82/227 (36%), Gaps = 70/227 (30%)

Query: 139 GFKLLTQLEGHQKVVSGITL-PSGSDK-LYSGSKDETVRVWDCASGQCAGVINLGGEVGC 196
            + +    EGH+  VS +   P+     + S S D+TV+VW+ ++ +             
Sbjct: 506 KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL------------ 553

Query: 197 MISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAW 254
                                 T     L+G  G V  +AV  D  L  +G +DG +L W
Sbjct: 554 --------------------RST-----LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588

Query: 255 KFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEH 312
             ++     +   SL+ +S  + +L    N   L + + ++ I++W+LE+   ++ L   
Sbjct: 589 --DLAEG--KKLYSLEANS-VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVD 642

Query: 313 TSVVMSL------------------LCW--D-QFLLSCSLDKTIKVW 338
                                    L W  D   L S   D  I+VW
Sbjct: 643 LKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 39/175 (22%), Positives = 63/175 (36%), Gaps = 33/175 (18%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
           W + +  KL + L GH   VS + + P GS    SG KD  V +WD A G+    +    
Sbjct: 546 WNLSNC-KLRSTLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAEGKKLYSLEANS 603

Query: 193 EVGCM-IS-EGPWIFIGVTNFVKAWNTQTNTDLS-LSGPVGQVYAMAVGNDLLFAGTQDG 249
            +  +  S    W+     + +K W+ ++ + +  L   +      A             
Sbjct: 604 VIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADN----------- 652

Query: 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLET 302
                            A+ K   +   SL   A+   L+SG  D  IRVW +  
Sbjct: 653 --------------SGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score =  102 bits (258), Expect = 6e-25
 Identities = 41/263 (15%), Positives = 78/263 (29%), Gaps = 29/263 (11%)

Query: 146 LEGHQ---KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC-MIS-E 200
            +G        S      G  +      D  +        +    +N G  V    IS  
Sbjct: 3   FQGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNP 62

Query: 201 GPWIFIGVTNFVKAWNTQTN------TDLSLSGPVGQVYAMAVGND--LLFAGTQDGAIL 252
              ++ G    VK W+          + L        + +  +  D   L  G +   + 
Sbjct: 63  TRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS 122

Query: 253 AWKFNVTTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCIQTL 309
            W  ++        A L   + A  +L +        +S   D +I VW+L     ++  
Sbjct: 123 IW--DLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQF 179

Query: 310 TEHTSVVMSLLCW--D-QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD 366
             HT      +    D   L +  LD T++ W     G     +       + +L   P 
Sbjct: 180 QGHTDGASC-IDISNDGTKLWTGGLDNTVRSWDLR-EGRQLQQHDF--TSQIFSLGYCPT 235

Query: 367 SEGKPVLLCSCNDNSVRFYDLPS 389
             G+ + +     ++V    +  
Sbjct: 236 --GEWLAVGM-ESSNVEVLHVNK 255

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 89.9 bits (224), Expect = 3e-20
 Identities = 42/214 (19%), Positives = 69/214 (32%), Gaps = 57/214 (26%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
           W + +   L+ Q +GH    S I +   G+ KL++G  D TVR WD   G+         
Sbjct: 168 WDLHNQ-TLVRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQ-------- 217

Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGA 250
                                         L       Q++++        L  G +   
Sbjct: 218 ------------------------------LQQHDFTSQIFSLGYCPTGEWLAVGMESSN 247

Query: 251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCIQ 307
           +     +V          L  H   V+SL     G     S   DN +  W       I 
Sbjct: 248 VEVL--HVNKPDKYQ---LHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIF 301

Query: 308 TLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVW 338
              + +S V+S       D+++++ S DK   V+
Sbjct: 302 QS-KESSSVLS-CDISVDDKYIVTGSGDKKATVY 333

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 27/177 (15%), Positives = 46/177 (25%), Gaps = 61/177 (34%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
           W + +G + L Q       +  +   P+G   L  G +   V V             L  
Sbjct: 210 WDLREG-RQLQQH-DFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPDK---YQLHL 263

Query: 193 EVGCMIS-----EGPWIFIGVT----NFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLF 243
              C++S      G W    V+    N + AW T     +  S     V +  +      
Sbjct: 264 HESCVLSLKFAYCGKWF---VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDI------ 314

Query: 244 AGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNL 300
             + D   +                                   +GS D    V+ +
Sbjct: 315 --SVDDKYIV----------------------------------TGSGDKKATVYEV 335

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score =  103 bits (259), Expect = 7e-25
 Identities = 45/275 (16%), Positives = 77/275 (28%), Gaps = 61/275 (22%)

Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGV 187
            F+ S       KL        + V+ +   P+    +  GSK   + +WD         
Sbjct: 55  PFIRSLKSY---KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF 111

Query: 188 INLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAV----GNDLLF 243
                                              +   GP   +  M       N  LF
Sbjct: 112 -----------------------------------IQGMGPGDAITGMKFNQFNTN-QLF 135

Query: 244 AGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK--LYSGSMDNSIRVWNLE 301
             +  GA      + + +  +  A           + V  ++  L +G     + +  L+
Sbjct: 136 VSSIRGATTLR--DFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD 193

Query: 302 TLQCIQTLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVWFA---TDSGNLEVTYTHNE 354
               I     H + V     +    D  + + S+D T+K+W      D  +      H  
Sbjct: 194 G-HEIFKEKLHKAKVTH-AEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPH-- 249

Query: 355 EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
           E  V A    P    K  LL +   N +R Y    
Sbjct: 250 EKPVNAAYFNPTDSTK--LLTTDQRNEIRVYSSYD 282

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 99.0 bits (247), Expect = 3e-23
 Identities = 34/287 (11%), Positives = 77/287 (26%), Gaps = 40/287 (13%)

Query: 134 WTVGDG-FKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLG 191
           W           Q  G    ++G+      +++L+  S      + D +           
Sbjct: 101 WDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTD 160

Query: 192 GEVGCMIS-----EGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAV---GNDLL 242
                            +  G  T  +       +          +V         + L+
Sbjct: 161 SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLM 220

Query: 243 FAGTQDGAILAWKFNVTT-NCFEPAASLKGHSLAVVSLV---VGANKLYSGSMDNSIRVW 298
              + D  +  W  ++          +   H   V +       + KL +    N IRV+
Sbjct: 221 ATSSVDATVKLW--DLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVY 278

Query: 299 NLETLQCIQTLTEHT--------------SVVMSLLC---WDQFLLSCSLDKTIKVWFAT 341
           +         +  H                 +  L+    +    L  +  +TI ++   
Sbjct: 279 SSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIY-DA 337

Query: 342 DSGNLEVTYTHNEEHGVLALCGM-PDSEGKPVLLCSCNDNSVRFYDL 387
           +SG L          G+++L    P  +    +L S    ++  ++ 
Sbjct: 338 NSGGLVHQLRDPNAAGIISLNKFSPTGD----VLASGMGFNILIWNR 380

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 92.8 bits (231), Expect = 5e-21
 Identities = 29/269 (10%), Positives = 68/269 (25%), Gaps = 58/269 (21%)

Query: 132 HSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG--SKDETVRVWDCASGQCAGVIN 189
           + +  G G     +  G   ++  I   S    +++      +   +    S +      
Sbjct: 11  NLYFQGGGRTGGQKKVGQTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSYKLHRT-- 68

Query: 190 LGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAV---GNDLLFAGT 246
                                               S    +V ++         +  G+
Sbjct: 69  -----------------------------------ASPFDRRVTSLEWHPTHPTTVAVGS 93

Query: 247 QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLV---VGANKLYSGSMDNSIRVWNLET- 302
           + G I+ W  +             G   A+  +       N+L+  S+  +  + +    
Sbjct: 94  KGGDIILW--DYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS 151

Query: 303 -LQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGV 358
            +Q               +      Q L +      + +    D   +     H  +  V
Sbjct: 152 VIQVFAKTDSWDYWYCC-VDVSVSRQMLATGDSTGRLLLL-GLDGHEIFKEKLH--KAKV 207

Query: 359 LALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
                 P      ++  S  D +V+ +DL
Sbjct: 208 THAEFNPR--CDWLMATSSVDATVKLWDL 234

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 27/165 (16%), Positives = 49/165 (29%), Gaps = 32/165 (19%)

Query: 143 LTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEG 201
                 H+K V+     P+ S KL +  +   +RV+                   +I   
Sbjct: 243 YIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK---------PDQIIIHP 293

Query: 202 PWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTN 261
              F  +T     W+           P+  +       D          I  +  +  + 
Sbjct: 294 HRQFQHLTPIKATWH-----------PMYDLIVAGRYPDDQLLLNDKRTIDIY--DANSG 340

Query: 262 CFEPAASLKGHSL-AVVSLVV----GANKLYSGSMDNSIRVWNLE 301
                  L+  +   ++SL      G + L SG    +I +WN E
Sbjct: 341 --GLVHQLRDPNAAGIISLNKFSPTG-DVLASGM-GFNILIWNRE 381

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score =  103 bits (258), Expect = 9e-25
 Identities = 39/245 (15%), Positives = 85/245 (34%), Gaps = 36/245 (14%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
           W   +G + L  L+GH   +  I +   +    +GS D ++++WD ++GQC         
Sbjct: 59  WYSLNG-ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVP 117

Query: 194 V--------GCMISEGPWIFIGVTNFVKAWNTQT--------------NTDLSLSGPVGQ 231
           V        G          +     +  +  +                  +     +  
Sbjct: 118 VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177

Query: 232 VYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLY-- 287
                       + AG +DG I  +  +V+ N +E   S+  H  ++  +    +  Y  
Sbjct: 178 ATVAGWSTKGKYIIAGHKDGKISKY--DVSNN-YEYVDSIDLHEKSISDMQFSPDLTYFI 234

Query: 288 SGSMDNSIRVWNLETLQCIQTLTEHT---SVVMSLLCWDQFLLSCSLDKTIKVW-FATDS 343
           + S D +  + ++ TLQ ++         + V++ L   +F++     +   V   + + 
Sbjct: 235 TSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPL--KEFIILGGGQEAKDVTTTSANE 292

Query: 344 GNLEV 348
           G  E 
Sbjct: 293 GKFEA 297

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 93.4 bits (233), Expect = 2e-21
 Identities = 23/265 (8%), Positives = 63/265 (23%), Gaps = 56/265 (21%)

Query: 134 WTVGDGFKLLTQLEGHQKVVS------GITLPSGSDKLYSGSKDETVRVWDCASGQCAGV 187
           W V +G + +   +    V        G    +  D         ++ +++         
Sbjct: 101 WDVSNG-QCVATWKSPVPVKRVEFSPCGNYFLAILDN--VMKNPGSINIYEIERDSATHE 157

Query: 188 INLGGEVGCMISEGPWIFIGVT-----------------NFVKAWNTQTNTDL--SLSGP 228
           +    E               T                   +  ++   N +   S+   
Sbjct: 158 LTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH 217

Query: 229 VGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS-------- 278
              +  M    D       ++D        +V+T   +     +     + +        
Sbjct: 218 EKSISDMQFSPDLTYFITSSRDTNSFLV--DVST--LQVLKKYETDC-PLNTAVITPLKE 272

Query: 279 -LVVGAN-------KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--D-QFLL 327
            +++G            +       R ++    + I  +  H   + + +          
Sbjct: 273 FIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNT-VAISPQGTSYA 331

Query: 328 SCSLDKTIKVWFATDSGNLEVTYTH 352
           S   D  I++    +    +  Y  
Sbjct: 332 SGGEDGFIRLHHF-EKSYFDFKYDV 355

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 78.8 bits (195), Expect = 3e-16
 Identities = 44/282 (15%), Positives = 91/282 (32%), Gaps = 75/282 (26%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
           +  G   K +  L GH++ ++ +     G D L+S SKD +  VW   +G+  G      
Sbjct: 17  YFQGSHMKAIK-LTGHERPLTQVKYNKEG-DLLFSCSKDSSASVWYSLNGERLGT----- 69

Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGA 250
                                           L G  G ++++ V         G+ D +
Sbjct: 70  --------------------------------LDGHTGTIWSIDVDCFTKYCVTGSADYS 97

Query: 251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMD-----NSIRVWNLETL 303
           I  W  +V+    +  A+ K     V  +      N   +   +      SI ++ +E  
Sbjct: 98  IKLW--DVSNG--QCVATWKSPV-PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD 152

Query: 304 QCIQTLTEHTSVVMSLL------------CW---DQFLLSCSLDKTIKVWFATDSGNLEV 348
                LT+ +   +  +             W    +++++   D  I  +  +++     
Sbjct: 153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVD 212

Query: 349 TYT-HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
           +   H  E  +  +   PD      +  S  D +    D+ +
Sbjct: 213 SIDLH--EKSISDMQFSPD--LTYFITSS-RDTNSFLVDVST 249

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 75.3 bits (186), Expect = 4e-15
 Identities = 24/191 (12%), Positives = 59/191 (30%), Gaps = 42/191 (21%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
           + V + ++ +  ++ H+K +S +   P  +    + S+D    + D ++ Q         
Sbjct: 202 YDVSNNYEYVDSIDLHEKSISDMQFSPDLT-YFITSSRDTNSFLVDVSTLQV-------- 252

Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTN-TDLSLSGPVGQVYAMAVGND-----LLFAGT 246
                              +K + T        ++ P+ +   +  G +        A  
Sbjct: 253 -------------------LKKYETDCPLNTAVIT-PLKEFIILGGGQEAKDVTTTSANE 292

Query: 247 QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN-KLY-SGSMDNSIRVWNLETLQ 304
                  +  +      E    ++GH   + ++ +      Y SG  D  IR+ + E   
Sbjct: 293 GKFEARFY--HKIFE--EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348

Query: 305 CIQTLTEHTSV 315
                    + 
Sbjct: 349 FDFKYDVEKAA 359

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 73.0 bits (180), Expect = 2e-14
 Identities = 33/244 (13%), Positives = 66/244 (27%), Gaps = 65/244 (26%)

Query: 165 LYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLS 224
            +         ++   S                         G    +        T + 
Sbjct: 5   HHHHHHSSGENLYFQGSHMK-----------------AIKLTGHERPL--------TQVK 39

Query: 225 LSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN 284
            +   G         DLLF+ ++D +   W         E   +L GH+  + S+ V   
Sbjct: 40  YN-KEG---------DLLFSCSKDSSASVW--YSLNG--ERLGTLDGHTGTIWSIDVDCF 85

Query: 285 --KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCS-----LDKT 334
                +GS D SI++W++   QC+ T       V   + +     + L+          +
Sbjct: 86  TKYCVTGSADYSIKLWDVSNGQCVATWKSPVP-VKR-VEFSPCGNYFLAILDNVMKNPGS 143

Query: 335 IKVW-----------FATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVR 383
           I ++                  +    TH               +    ++    D  + 
Sbjct: 144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK---YIIAGHKDGKIS 200

Query: 384 FYDL 387
            YD+
Sbjct: 201 KYDV 204

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 65.7 bits (161), Expect = 4e-12
 Identities = 16/110 (14%), Positives = 39/110 (35%), Gaps = 13/110 (11%)

Query: 283 ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWF 339
            +  +     +   ++   +      LT H   +   + +      L SCS D +  VW+
Sbjct: 2   GSSHHHHHHSSGENLYFQGSHMKAIKLTGHERPLTQ-VKYNKEGDLLFSCSKDSSASVWY 60

Query: 340 ATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
           +  +G    T   H     + ++     ++       +   D S++ +D+
Sbjct: 61  S-LNGERLGTLDGHT--GTIWSIDVDCFTK----YCVTGSADYSIKLWDV 103

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score =  102 bits (256), Expect = 1e-24
 Identities = 51/259 (19%), Positives = 88/259 (33%), Gaps = 55/259 (21%)

Query: 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS 199
            +    L GH   +  +   + S  L S S+D  + +WD  +                  
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA------------ 92

Query: 200 EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN 257
                                    +      V   A       +  G  D     +  N
Sbjct: 93  -------------------------IPLRSSWVMTCAYAPSGNYVACGGLDNICSIY--N 125

Query: 258 VTT--NCFEPAASLKGHSLAVVSLVVGAN-KLYSGSMDNSIRVWNLETLQCIQTLTEHTS 314
           + T       +  L GH+  +       + ++ + S D +  +W++ET Q   T T HT 
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185

Query: 315 VVMSL-LCWD-QFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKP 371
            VMSL L  D +  +S + D + K+W     G    T+T H  E  + A+C  P+     
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVR-EGMCRQTFTGH--ESDINAICFFPNGN--- 239

Query: 372 VLLCSC-NDNSVRFYDLPS 389
               +  +D + R +DL +
Sbjct: 240 -AFATGSDDATCRLFDLRA 257

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 89.1 bits (222), Expect = 5e-20
 Identities = 36/215 (16%), Positives = 68/215 (31%), Gaps = 54/215 (25%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
           W +  G +  T   GH   V  ++L P       SG+ D + ++WD   G C        
Sbjct: 169 WDIETG-QQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMC-------- 218

Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGA 250
                                    QT      +G    + A+    +      G+ D  
Sbjct: 219 ------------------------RQT-----FTGHESDINAICFFPNGNAFATGSDDAT 249

Query: 251 ILAWKFNVTTNCFEPAASLKGHSL--AVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCI 306
              +  ++  +  +   +    ++   + S+    +   L +G  D +  VW+       
Sbjct: 250 CRLF--DLRAD--QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305

Query: 307 QTLTEHTSVVMSLLCW--D-QFLLSCSLDKTIKVW 338
             L  H + V   L    D   + + S D  +K+W
Sbjct: 306 GVLAGHDNRVSC-LGVTDDGMAVATGSWDSFLKIW 339

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 74.9 bits (185), Expect = 3e-15
 Identities = 27/174 (15%), Positives = 57/174 (32%), Gaps = 25/174 (14%)

Query: 224 SLSGPVGQVYAMAVGNDL-LFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG 282
            L   +           L       D                   +L+GH   + ++  G
Sbjct: 13  QLKNQIRDARKACADATLSQITNNIDPVGRIQ--------MRTRRTLRGHLAKIYAMHWG 64

Query: 283 AN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--D-QFLLSCSLDKTIKV 337
            +   L S S D  + +W+  T   +  +   +S VM+   +     ++    LD    +
Sbjct: 65  TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT-CAYAPSGNYVACGGLDNICSI 123

Query: 338 W-FATDSGNLEVTYT---HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
           +   T  GN+ V+     H     +     + D++    ++ S  D +   +D+
Sbjct: 124 YNLKTREGNVRVSRELAGH--TGYLSCCRFLDDNQ----IVTSSGDTTCALWDI 171

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 69.1 bits (170), Expect = 3e-13
 Identities = 34/171 (19%), Positives = 58/171 (33%), Gaps = 46/171 (26%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
           W V +G        GH+  ++ I   P+G+    +GS D T R++D  + Q         
Sbjct: 211 WDVREG-MCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMT----- 263

Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGA 250
                                          S    +  + +++      LL AG  D  
Sbjct: 264 ------------------------------YSHDNIICGITSVSFSKSGRLLLAGYDDFN 293

Query: 251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWN 299
              W  +      + A  L GH   V  L V  +   + +GS D+ +++WN
Sbjct: 294 CNVW--DALKA--DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score =  101 bits (254), Expect = 2e-24
 Identities = 53/255 (20%), Positives = 86/255 (33%), Gaps = 55/255 (21%)

Query: 141 KLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS 199
                L GH   VS + +   G     SGS D T+R+WD  +G                 
Sbjct: 77  IPQRALRGHSHFVSDVVISSDGQ-FALSGSWDGTLRLWDLTTGTTTR------------- 122

Query: 200 EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVT 259
                F+G T  V +        ++ S    +          + +G++D  I  W  N  
Sbjct: 123 ----RFVGHTKDVLS--------VAFS-SDNR---------QIVSGSRDKTIKLW--NTL 158

Query: 260 TNCFEPAASLKGHSLAVVSLVV---GANK-LYSGSMDNSIRVWNLETLQCIQTLTEHTSV 315
             C +     + HS  V  +      +N  + S   D  ++VWNL   +       HT  
Sbjct: 159 GVC-KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY 217

Query: 316 VMSLLCW--D-QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPV 372
           + + +    D     S   D    +W   + G    T        + ALC  P+      
Sbjct: 218 LNT-VTVSPDGSLCASGGKDGQAMLW-DLNEGKHLYTLDGG--DIINALCFSPN--RY-- 269

Query: 373 LLCSCNDNSVRFYDL 387
            LC+    S++ +DL
Sbjct: 270 WLCAATGPSIKIWDL 284

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 86.4 bits (215), Expect = 5e-19
 Identities = 52/234 (22%), Positives = 91/234 (38%), Gaps = 53/234 (22%)

Query: 167 SGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS 226
           SG    T  ++  +       +                              T     L 
Sbjct: 9   SGVDLGTENLYFQSMMTEQMTL----------------------------RGT-----LK 35

Query: 227 GPVGQVYAMAV---GNDLLFAGTQDGAILAWKFNVTT---NCFEPAASLKGHSLAVVSLV 280
           G  G V  +A      D++ + ++D  I+ W   +T    N   P  +L+GHS  V  +V
Sbjct: 36  GHNGWVTQIATTPQFPDMILSASRDKTIIMW--KLTRDETNYGIPQRALRGHSHFVSDVV 93

Query: 281 VGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTI 335
           + ++     SGS D ++R+W+L T    +    HT  V+S + +   ++ ++S S DKTI
Sbjct: 94  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS-VAFSSDNRQIVSGSRDKTI 152

Query: 336 KVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
           K+W         V    H+E   V  +   P+      ++ SC  D  V+ ++L
Sbjct: 153 KLWNTLGVCKYTVQDESHSE--WVSCVRFSPN--SSNPIIVSCGWDKLVKVWNL 202

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 85.6 bits (213), Expect = 8e-19
 Identities = 44/223 (19%), Positives = 75/223 (33%), Gaps = 62/223 (27%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDK-LYSGSKDETVRVWDCASGQCAGVINLG 191
           W      K   Q E H + VS +   P+ S+  + S   D+ V+VW+ A+ +        
Sbjct: 155 WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN---- 210

Query: 192 GEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDG 249
                                              G  G +  + V  D  L  +G +DG
Sbjct: 211 ---------------------------------HIGHTGYLNTVTVSPDGSLCASGGKDG 237

Query: 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQ 307
             + W  ++     +   +L G    + +L    N   L + +   SI++W+LE    + 
Sbjct: 238 QAMLW--DLNEG--KHLYTLDGGD-IINALCFSPNRYWLCAAT-GPSIKIWDLEGKIIVD 291

Query: 308 TLTE---------HTSVVMSLLCW--D-QFLLSCSLDKTIKVW 338
            L +               S L W  D Q L +   D  ++VW
Sbjct: 292 ELKQEVISTSSKAEPPQCTS-LAWSADGQTLFAGYTDNLVRVW 333

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 83.7 bits (208), Expect = 4e-18
 Identities = 57/258 (22%), Positives = 99/258 (38%), Gaps = 53/258 (20%)

Query: 141 KLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS 199
            L   L+GH   V+ I   P   D + S S+D+T+ +W     +    I           
Sbjct: 29  TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR-------- 80

Query: 200 EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVT 259
                  G ++FV        +D+ +S   GQ            +G+ DG +  W  ++T
Sbjct: 81  ----ALRGHSHFV--------SDVVIS-SDGQ---------FALSGSWDGTLRLW--DLT 116

Query: 260 TNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVV 316
           T          GH+  V+S+   ++  ++ SGS D +I++WN     +       H+  V
Sbjct: 117 TG--TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV 174

Query: 317 MSLLCW-----DQFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEGK 370
              + +     +  ++SC  DK +KVW    +  L+  +  H     +  +   PD  G 
Sbjct: 175 SC-VRFSPNSSNPIIVSCGWDKLVKVWNLA-NCKLKTNHIGHT--GYLNTVTVSPD--GS 228

Query: 371 PVLLCSC-NDNSVRFYDL 387
             L  S   D     +DL
Sbjct: 229 --LCASGGKDGQAMLWDL 244

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 79.1 bits (196), Expect = 1e-16
 Identities = 42/273 (15%), Positives = 88/273 (32%), Gaps = 65/273 (23%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
           W +  G     +  GH K V  +        ++ SGS+D+T+++W+              
Sbjct: 113 WDLTTG-TTTRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYT------ 164

Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAV---GNDLLFA-GTQD 248
                                         +        V  +      ++ +      D
Sbjct: 165 ------------------------------VQDESHSEWVSCVRFSPNSSNPIIVSCGWD 194

Query: 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQC 305
             +  W  N+     +   +  GH+  + ++ V   G +   SG  D    +W+L   + 
Sbjct: 195 KLVKVW--NLAN--CKLKTNHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKH 249

Query: 306 IQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVW-------FATDSGNLEVTYTHNEEH 356
           + TL     ++ + LC+  +++ L  +   +IK+W              +  T +  E  
Sbjct: 250 LYTLDGG-DIINA-LCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP 307

Query: 357 GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
              +L    D  G+ +      DN VR + +  
Sbjct: 308 QCTSLAWSAD--GQTLFAGY-TDNLVRVWQVTI 337

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 2/39 (5%)

Query: 146 LEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQ 183
            +      + +     G   L++G  D  VRVW    G 
Sbjct: 302 SKAEPPQCTSLAWSADGQ-TLFAGYTDNLVRVWQVTIGT 339

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score =  101 bits (253), Expect = 4e-24
 Identities = 43/265 (16%), Positives = 79/265 (29%), Gaps = 53/265 (20%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
           W           +      V      PSG   +  G  D    V+     +   +     
Sbjct: 91  WDSFTT-NKEHAVTMPCTWVMACAYAPSGC-AIACGGLDNKCSVYPLTFDKNENMAAKKK 148

Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGA 250
                                           ++     + A +  N    +   + DG 
Sbjct: 149 S-------------------------------VAMHTNYLSACSFTNSDMQILTASGDGT 177

Query: 251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVV----GANKLYSGSMDNSIRVWNLETLQCI 306
              W  +V +   +   S  GH   V+ L +      N   SG  D    VW++ + QC+
Sbjct: 178 CALW--DVESG--QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCV 233

Query: 307 QTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALC 362
           Q    H S V S + +        S S D T +++    +      Y+  +   G  ++ 
Sbjct: 234 QAFETHESDVNS-VRYYPSGDAFASGSDDATCRLYDL-RADREVAIYSKESIIFGASSVD 291

Query: 363 GMPDSEGKPVLLCSCNDNSVRFYDL 387
                 G+ +L    ND ++  +D+
Sbjct: 292 FSLS--GR-LLFAGYNDYTINVWDV 313

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 96.8 bits (242), Expect = 1e-22
 Identities = 49/258 (18%), Positives = 83/258 (32%), Gaps = 54/258 (20%)

Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISE 200
           K    L+GH   V  +       ++ S S+D  V VWD  +                   
Sbjct: 55  KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHA------------- 101

Query: 201 GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAW--KF 256
                                   ++ P   V A A       +  G  D     +   F
Sbjct: 102 ------------------------VTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTF 137

Query: 257 NVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTS 314
           +   N      S+  H+  + +     +  ++ + S D +  +W++E+ Q +Q+   H +
Sbjct: 138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGA 197

Query: 315 VVMSL----LCWDQFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEG 369
            V+ L           +S   DK   VW    SG     +  H  E  V ++   P   G
Sbjct: 198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMR-SGQCVQAFETH--ESDVNSVRYYPS--G 252

Query: 370 KPVLLCSCNDNSVRFYDL 387
                 S +D + R YDL
Sbjct: 253 DAFASGS-DDATCRLYDL 269

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 88.0 bits (219), Expect = 2e-19
 Identities = 45/216 (20%), Positives = 70/216 (32%), Gaps = 54/216 (25%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLY-SGSKDETVRVWDCASGQCAGVINLG 191
           W V  G +LL    GH   V  + L PS +   + SG  D+   VWD  SGQC       
Sbjct: 181 WDVESG-QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC------- 232

Query: 192 GEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDG 249
                                     Q             V ++          +G+ D 
Sbjct: 233 -------------------------VQA-----FETHESDVNSVRYYPSGDAFASGSDDA 262

Query: 250 AILAWKFNVTTNCFEPAASLKGHS--LAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQC 305
               +  ++  +     A     S      S+    +   L++G  D +I VW++     
Sbjct: 263 TCRLY--DLRAD--REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR 318

Query: 306 IQTLTEHTSVVMSLLCW--D-QFLLSCSLDKTIKVW 338
           +  L  H + V + L    D     S S D T++VW
Sbjct: 319 VSILFGHENRVST-LRVSPDGTAFCSGSWDHTLRVW 353

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 87.6 bits (218), Expect = 2e-19
 Identities = 51/270 (18%), Positives = 87/270 (32%), Gaps = 70/270 (25%)

Query: 131 LHSWTVGDGFKLLTQLEGHQKVVSGIT-LPSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189
           L      +       +  H   +S  +   S   ++ + S D T  +WD  SGQ      
Sbjct: 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQL----- 188

Query: 190 LGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDL---LFA-G 245
                                       Q+       G    V  + +        F  G
Sbjct: 189 ---------------------------LQS-----FHGHGADVLCLDLAPSETGNTFVSG 216

Query: 246 TQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLET 302
             D   + W  ++ +   +   + + H   V S+     G +   SGS D + R+++L  
Sbjct: 217 GCDKKAMVW--DMRSG--QCVQAFETHESDVNSVRYYPSG-DAFASGSDDATCRLYDLRA 271

Query: 303 LQCIQTLTEH------TSVVMSLLCWD-QFLLSCSLDKTIKVWFATDSGNLEVTYT-HNE 354
            + +   ++       +SV  SL     + L +   D TI VW     G+       H  
Sbjct: 272 DREVAIYSKESIIFGASSVDFSL---SGRLLFAGYNDYTINVW-DVLKGSRVSILFGH-- 325

Query: 355 EHGVLALCGMPDSEGKPVLLCSC-NDNSVR 383
           E+ V  L   PD  G     CS   D+++R
Sbjct: 326 ENRVSTLRVSPD--GT--AFCSGSWDHTLR 351

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 73.0 bits (180), Expect = 2e-14
 Identities = 33/251 (13%), Positives = 63/251 (25%), Gaps = 80/251 (31%)

Query: 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIF 205
            +G  +  +  +L S ++ L    ++E  ++ D    Q A                    
Sbjct: 4   TDGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVA-------------------- 43

Query: 206 IGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEP 265
                          T  +L G   +V  M       +    D   +             
Sbjct: 44  ---ERVEALGQFVMKTRRTLKGHGNKVLCMD------WCK--DKRRIV------------ 80

Query: 266 AASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--D 323
                                 S S D  + VW+  T      +T   + VM+   +   
Sbjct: 81  ----------------------SSSQDGKVIVWDSFTTNKEHAVTMPCTWVMA-CAYAPS 117

Query: 324 -QFLLSCSLDKTIKVW---FATDSGNLEVTYT---HNEEHGVLALCGMPDSEGKPVLLCS 376
              +    LD    V+   F  +        +   H   + + A           +L  S
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMH--TNYLSACSFTNS--DMQILTAS 173

Query: 377 CNDNSVRFYDL 387
             D +   +D+
Sbjct: 174 -GDGTCALWDV 183

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score =   99 bits (250), Expect = 6e-24
 Identities = 47/269 (17%), Positives = 85/269 (31%), Gaps = 61/269 (22%)

Query: 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS 199
             L+  L+ +++ +      S    L +GS D  +++          +            
Sbjct: 4   INLIKSLKLYKEKIWSFD-FSQ-GILATGSTDRKIKLVSVKYDDFTLI------------ 49

Query: 200 EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN 257
                                  L  +     + ++A      LL AG+ D  +  W   
Sbjct: 50  ---------------------DVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW--A 86

Query: 258 VTT-----NCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLET----LQCI 306
                      +  A ++GH   V  +    +   L + S D S+ +W  +      +CI
Sbjct: 87  KEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI 146

Query: 307 QTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVW-FATDSGNLEVTYT-HNEEHGVLAL 361
             L EH+  V   + W   +  L S S D T+++W    D          H  E  V + 
Sbjct: 147 SVLQEHSQDVKH-VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGH--EGTVWSS 203

Query: 362 CGMPDSEGKPVLLCSC-NDNSVRFYDLPS 389
                       LCS  +D++VR +    
Sbjct: 204 DFDKT--EGVFRLCSGSDDSTVRVWKYMG 230

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 98.0 bits (245), Expect = 3e-23
 Identities = 52/268 (19%), Positives = 86/268 (32%), Gaps = 59/268 (22%)

Query: 141 KLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS 199
             +     H+K +  +   P  S  L +GS D TV +W                      
Sbjct: 49  IDVLDETAHKKAIRSVAWRPHTS-LLAAGSFDSTVSIWAKEESADRTFEMDLLA------ 101

Query: 200 EGPWIFIGVTNFVK--AWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFN 257
               I  G  N VK  AW+             G           L   ++D ++  W+ +
Sbjct: 102 ----IIEGHENEVKGVAWS-----------NDGY---------YLATCSRDKSVWIWETD 137

Query: 258 VTTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLET--LQCIQTLTEH 312
            +   +E  + L+ HS  V  ++        L S S D+++R+W       +C+  L  H
Sbjct: 138 ESGEEYECISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWECVAVLNGH 196

Query: 313 TSVVMSLLCWD-----QFLLSCSLDKTIKVW-------FATDSGNLEVTYTHNEEHGVLA 360
              V S   +D       L S S D T++VW               E       +  V  
Sbjct: 197 EGTVWS-SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYN 255

Query: 361 LCGMPDSEGKPVLLCS-CNDNSVRFYDL 387
           +    +      L+ S   D  +  Y+ 
Sbjct: 256 VAWGFNG-----LIASVGADGVLAVYEE 278

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 86.1 bits (214), Expect = 6e-19
 Identities = 56/273 (20%), Positives = 90/273 (32%), Gaps = 62/273 (22%)

Query: 137 GDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG 195
                LL  +EGH+  V G+     G   L + S+D++V +W+                 
Sbjct: 94  TFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEY--------- 143

Query: 196 CMISEGPWIFIGVTNFVK--AWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA 253
               E   +    +  VK   W+           P            LL + + D  +  
Sbjct: 144 ----ECISVLQEHSQDVKHVIWH-----------PSEA---------LLASSSYDDTVRI 179

Query: 254 WKFNVTTNCFEPAASLKGHSLAVVSLVV----GANKLYSGSMDNSIRVWNLETLQCIQTL 309
           W      + +E  A L GH   V S       G  +L SGS D+++RVW           
Sbjct: 180 W--KDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ 237

Query: 310 T---------EHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGV 358
                      H   V + + W  +  + S   D  + V+     G  +V       HGV
Sbjct: 238 EWVCEAILPDVHKRQVYN-VAWGFNGLIASVGADGVLAVY-EEVDGEWKVFAKRALCHGV 295

Query: 359 LALCGM----PDSEGKPVLLCSCNDNSVRFYDL 387
             +  +     +  GK +L    +D  V F+ L
Sbjct: 296 YEINVVKWLELN--GKTILATGGDDGIVNFWSL 326

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 77.2 bits (191), Expect = 5e-16
 Identities = 35/223 (15%), Positives = 63/223 (28%), Gaps = 50/223 (22%)

Query: 134 WTVGDG---FKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189
           W   +    ++ ++ L+ H + V  +   PS    L S S D+TVR+W            
Sbjct: 134 WETDESGEEYECISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDD------ 186

Query: 190 LGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDG 249
              E          +  G    V                   V+ +  G+D       D 
Sbjct: 187 --WECVA-------VLNGHEGTV--------WSSDFD-KTEGVFRLCSGSD-------DS 221

Query: 250 AILAWKFNVTTNCFEP-----AASLKGHSLAVVSLVVGAN-KLYSGSMDNSIRVWNLETL 303
            +  WK+       +      A     H   V ++  G N  + S   D  + V+     
Sbjct: 222 TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDG 281

Query: 304 QC----IQTLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVW 338
           +      + L      +  +          L +   D  +  W
Sbjct: 282 EWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFW 324

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 31/177 (17%), Positives = 53/177 (29%), Gaps = 36/177 (20%)

Query: 134 WTVGDG-FKLLTQLEGHQKVVSGITL-PSGS-DKLYSGSKDETVRVWDCASGQCAGVINL 190
           W   D  ++ +  L GH+  V       +    +L SGS D TVRVW             
Sbjct: 180 WKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD--QQ 237

Query: 191 GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDG 249
                 ++ +                               VY +A G + L+ +   DG
Sbjct: 238 EWVCEAILPDV----------------HKRQ----------VYNVAWGFNGLIASVGADG 271

Query: 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVV----GANKLYSGSMDNSIRVWNLET 302
            +  ++            +L      +  +      G   L +G  D  +  W+LE 
Sbjct: 272 VLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 46.8 bits (112), Expect = 5e-06
 Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 300 LETLQCIQTLTEHTSVVMSLLCWD-QFLLSCSLDKTIKVW 338
           + ++  I++L  +   + S   +    L + S D+ IK+ 
Sbjct: 1   MASINLIKSLKLYKEKIWS-FDFSQGILATGSTDRKIKLV 39

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 5/54 (9%)

Query: 134 WTVGDG---FKLLTQLEGHQKVVSGITL--PSGSDKLYSGSKDETVRVWDCASG 182
           +   DG         L      ++ +     +G   L +G  D  V  W     
Sbjct: 276 YEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEKA 329

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score =  101 bits (253), Expect = 7e-24
 Identities = 40/269 (14%), Positives = 71/269 (26%), Gaps = 49/269 (18%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
             +  G      L+GH++ +  ++  P     L + S D  V++WD              
Sbjct: 171 CDLKSG-SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG-------- 221

Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGA 250
                          +T            + + +   G+V  +   +D   L     D  
Sbjct: 222 -------------CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR 268

Query: 251 ILAWKFNVTTNCFEPAASLKGHSL--------AVVSLVVGANKLYSGSMDNSIRVWNLET 302
           +  W  N +    E      G             VS    +         ++I V+ + +
Sbjct: 269 MRLW--NSSNG--ENTLVNYGKVCNNSKKGLKFTVSCGCSSE-FVFVPYGSTIAVYTVYS 323

Query: 303 LQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVL 359
            + I  L  H   V     +    Q L S S D  I  W        E       +    
Sbjct: 324 GEQITMLKGHYKTVDC-CVFQSNFQELYSGSRDCNILAW---VPSLYEPVPDD--DETTT 377

Query: 360 ALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388
                P    +     S  +     +  P
Sbjct: 378 KSQLNPA--FEDAWSSSDEEGGTSAWSHP 404

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 95.4 bits (238), Expect = 8e-22
 Identities = 41/267 (15%), Positives = 84/267 (31%), Gaps = 61/267 (22%)

Query: 146 LEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWI 204
            + H+  V  +   P  +    S S D+T++VWD  + Q A V N    V          
Sbjct: 95  PDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSH------- 147

Query: 205 FIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFE 264
                      +           PV   + +         GT+   +     ++ +    
Sbjct: 148 ---------HMS-----------PVSTKHCLVA------VGTRGPKVQLC--DLKSG--S 177

Query: 265 PAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCI--------------- 306
            +  L+GH   ++++         L + S D+ +++W++                     
Sbjct: 178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAV 237

Query: 307 -QTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALC 362
               T H   V   LC+      LL+   D  +++W +++  N  V Y     +    L 
Sbjct: 238 ESANTAHNGKVNG-LCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLK 296

Query: 363 GMPDSEGKPVLLCSCNDNSVRFYDLPS 389
                      +     +++  Y + S
Sbjct: 297 FTVSCGCSSEFVFVPYGSTIAVYTVYS 323

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 91.9 bits (229), Expect = 1e-20
 Identities = 39/278 (14%), Positives = 78/278 (28%), Gaps = 55/278 (19%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
             +    K       H   ++ + + P     + SG  D  + ++D  +           
Sbjct: 28  LGLELN-KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY--YTC 84

Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAIL 252
           +  C I             V          +                 +  + + D  + 
Sbjct: 85  KAVCSIGRDH--PDVHRYSV--------ETVQWYPHDTG---------MFTSSSFDKTLK 125

Query: 253 AWKFNVTTNCFEPAASLKGHSLAVVSLV---VGANKLY--SGSMDNSIRVWNLETLQCIQ 307
            W  +  T      A +      V S     V         G+    +++ +L++  C  
Sbjct: 126 VW--DTNTLQ---TADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH 180

Query: 308 TLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE--------- 354
            L  H   +++ + W    D  L + S D  +K+W    +    +T   +          
Sbjct: 181 ILQGHRQEILA-VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVES 239

Query: 355 -----EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
                   V  LC   D  G  +L     DN +R ++ 
Sbjct: 240 ANTAHNGKVNGLCFTSD--GLHLLTVG-TDNRMRLWNS 274

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 37/252 (14%), Positives = 69/252 (27%), Gaps = 69/252 (27%)

Query: 160 SGS-DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQ 218
           +G  D L     + T RV      +   V                               
Sbjct: 10  TGLEDPLRLRRAESTRRVLGLELNKDRDV------------------------------- 38

Query: 219 TNTDLSLSGPVGQVYAMAV----GNDLLFAGTQDGAILAW---------KFNVTTNCFEP 265
                      G +  + +    G  +L +G  DG I+ +          +     C   
Sbjct: 39  ------ERIHGGGINTLDIEPVEGRYML-SGGSDGVIVLYDLENSSRQSYYTCKAVCSIG 91

Query: 266 AASLKGHSLAVVSLV---VGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW 322
                 H  +V ++           S S D +++VW+  TLQ           V S    
Sbjct: 92  RDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF-NFEETVYS-HHM 149

Query: 323 ------DQFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLLC 375
                    +   +    +++     SG+       H     +LA+   P      +L  
Sbjct: 150 SPVSTKHCLVAVGTRGPKVQLC-DLKSGSCSHILQGH--RQEILAVSWSPR--YDYILAT 204

Query: 376 SCNDNSVRFYDL 387
           +  D+ V+ +D+
Sbjct: 205 ASADSRVKLWDV 216

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 68.4 bits (168), Expect = 8e-13
 Identities = 27/197 (13%), Positives = 59/197 (29%), Gaps = 25/197 (12%)

Query: 125 GEKC-KFLHSWTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASG 182
              C   L          + +    H   V+G+     G   L +   D  +R+W+ ++G
Sbjct: 219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSNG 277

Query: 183 QCAGV------INLGGEVGCMISE--GPWIFIGVT-NFVKAWNTQTNTDLS-LSGPVGQV 232
           +   V       N    +   +S             + +  +   +   ++ L G    V
Sbjct: 278 ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTV 337

Query: 233 YAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYS 288
                 ++   L++G++D  ILAW    +         +           +       +S
Sbjct: 338 DCCVFQSNFQELYSGSRDCNILAW--VPSL-----YEPVPDDDETTTKSQLNPAFEDAWS 390

Query: 289 GSMD-NSIRVWNLETLQ 304
            S +      W+    +
Sbjct: 391 SSDEEGGTSAWSHPQFE 407

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score =  100 bits (250), Expect = 1e-23
 Identities = 47/276 (17%), Positives = 86/276 (31%), Gaps = 61/276 (22%)

Query: 134 WTV-GDGFKLLTQLEGHQKVVSGIT--LPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190
           + V G+  KL+  L GH+  V  +    P     L S S D  V +W   +G+ + +   
Sbjct: 38  FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH 97

Query: 191 GG-------------EVGCMISEGPWIFIGVT----NFVKAWNTQTNTDLS---LSGPVG 230
                          E G ++         +       V     + N   S   +     
Sbjct: 98  AVHSASVNSVQWAPHEYGPLL---------LVASSDGKVSVVEFKENGTTSPIIIDAHAI 148

Query: 231 QVYAMA-----VGNDLLFAGTQDGAILA----------WKFNVTTNCFEPAASLKGHSLA 275
            V + +     +  D    GT++               WK+N     +   ++L+GHS  
Sbjct: 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 208

Query: 276 VVSL-----VVGANKLYSGSMDNSIRVWNLET-----LQCIQTLTEHTSVVMSLLCW--D 323
           V  +     V+  + L S S D +  +W  +       + +    +   V+     W   
Sbjct: 209 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR-ASWSLS 267

Query: 324 -QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGV 358
              L     D  + +W     G  E     ++  G 
Sbjct: 268 GNVLALSGGDNKVTLWKENLEGKWEPAGEVHQGGGG 303

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 77.7 bits (192), Expect = 5e-16
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 15/134 (11%)

Query: 267 ASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLE--TLQCIQTLTEHTSVVMSLLC 321
                H+  +   V+   G  +L + S D +I+++ +E  T + I TLT H   V   + 
Sbjct: 5   VIANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWR-VD 62

Query: 322 W-----DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE-EHGVLALCGMPDSEGKPVLLC 375
           W        L SCS D  + +W   ++G       H      V ++   P   G  +LL 
Sbjct: 63  WAHPKFGTILASCSYDGKVLIW-KEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLV 120

Query: 376 SCNDNSVRFYDLPS 389
           + +D  V   +   
Sbjct: 121 ASSDGKVSVVEFKE 134

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 42/280 (15%), Positives = 80/280 (28%), Gaps = 84/280 (30%)

Query: 141 KLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS 199
            ++     H +++    L   G  +L + S D+T+++++                     
Sbjct: 2   SMVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGE----------------- 43

Query: 200 EGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA------ 253
                            T    D +L+G  G V+ +       +A  + G ILA      
Sbjct: 44  -----------------THKLID-TLTGHEGPVWRVD------WAHPKFGTILASCSYDG 79

Query: 254 ----WKFNVTTNCFEPAASLKGHSLAVVSLV----VGANKLYSGSMDNSIRVWNLETLQC 305
               W        +   A    HS +V S+          L   S D  + V   +    
Sbjct: 80  KVLIW--KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 137

Query: 306 IQ--TLTEHTSVVMSLLCW----------------DQFLLSCSLDKTIKVW-FATDSGNL 346
                +  H   V S   W                 +  ++   D  +K+W + +D+   
Sbjct: 138 TSPIIIDAHAIGVNS-ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 196

Query: 347 EVTYT---HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVR 383
            +  T   H+    V  +   P    +  L     D +  
Sbjct: 197 VLESTLEGHS--DWVRDVAWSPTVLLRSYLASVSQDRTCI 234

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 72.3 bits (178), Expect = 3e-14
 Identities = 30/155 (19%), Positives = 48/155 (30%), Gaps = 22/155 (14%)

Query: 256 FNVTTNCFEPAASLKGHSLAVVSLVV----GANKLYSGSMDNSIRVWNLETLQCIQ--TL 309
           F V     +   +L GH   V  +          L S S D  + +W  E  +  Q    
Sbjct: 38  FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH 97

Query: 310 TEHTSVVMSLLCW--D---QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGM 364
             H++ V S+  W        LL  S D  + V    ++G            GV +    
Sbjct: 98  AVHSASVNSV-QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 156

Query: 365 PDSEGKPV---------LLCSC-NDNSVRFYDLPS 389
           P +  +              +   DN V+ +   S
Sbjct: 157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 191

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 33/194 (17%), Positives = 55/194 (28%), Gaps = 55/194 (28%)

Query: 134 WTVGDG---FKLLTQLEGHQKVVSGITL-PSGSDKLY--SGSKDETVRVWDCASGQCAGV 187
           W        + L + LEGH   V  +   P+   + Y  S S+D T  +W   + Q    
Sbjct: 187 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ---- 242

Query: 188 INLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAV---GNDLLFA 244
                        GPW                 T L        ++  +    GN +L  
Sbjct: 243 -------------GPW---------------KKTLLKEEKFPDVLWRASWSLSGN-VLAL 273

Query: 245 GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQ 304
              D  +  WK            +L+G       +  G     SG    + + ++     
Sbjct: 274 SGGDNKVTLWK-----------ENLEGKWEPAGEVHQGG--GGSGGGGATSKEFDGPCQN 320

Query: 305 CIQTLTEHTSVVMS 318
            I  L    +  + 
Sbjct: 321 EIDLLFSECNDEID 334

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 29/225 (12%), Positives = 55/225 (24%), Gaps = 60/225 (26%)

Query: 134 WTVGDGFKLLTQ-LEGHQKVVSGI-------------TLPSGSDKLYSGSKDETVRVWDC 179
               +        ++ H   V+                    S K  +G  D  V++W  
Sbjct: 130 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 189

Query: 180 ASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVK--AWNTQTNTDLSLSGPVGQVYAMAV 237
            S     V+           E      G +++V+  AW        S +  +        
Sbjct: 190 NSDAQTYVL-----------EST--LEGHSDWVRDVAW--------SPTVLLRS------ 222

Query: 238 GNDLLFAGTQDGAILAWKFNVTTN-CFEPAASLKGHSLAVVSLV--VGANKLYSGSMDNS 294
               L + +QD   + W  +       +     +     +      +  N L     DN 
Sbjct: 223 ---YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 279

Query: 295 IRVWNLETL-QCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVW 338
           + +W      +       H               S     T K +
Sbjct: 280 VTLWKENLEGKWEPAGEVHQGGG----------GSGGGGATSKEF 314

>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Length = 379

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 11/90 (12%)

Query: 304 QCIQTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVW-FATDSGNLEVTYT-HNEEHGV 358
             +     H  ++      D   + L +CS DKTIK++    ++  L  T T H  E  V
Sbjct: 2   SMVVIANAHNELIHDA-VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH--EGPV 58

Query: 359 LALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
             +       G   +L SC  D  V  +  
Sbjct: 59  WRVDWAHPKFGT--ILASCSYDGKVLIWKE 86

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 99.6 bits (249), Expect = 1e-23
 Identities = 47/270 (17%), Positives = 86/270 (31%), Gaps = 60/270 (22%)

Query: 135 TVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV 194
             G        L GH   VS + L   +    S S D+T+R+WD  +G            
Sbjct: 61  QNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKR------- 113

Query: 195 GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAW 254
                     F+G  + V +        ++ S P  +          + +   +  I  W
Sbjct: 114 ----------FVGHQSEVYS--------VAFS-PDNR---------QILSAGAEREIKLW 145

Query: 255 KFNVTTNCFEPAASLKGHSLAVVS------------LVVGANKLYSGSMDNSIRVWNLET 302
             N+   C   +A  + HS  V              +   A    S   D  ++VWN   
Sbjct: 146 --NILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF 203

Query: 303 LQCIQTLTEHTSVVMSLLCW--D-QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVL 359
            Q   T   H S V   L    + +++ +   DK + +W   +    +  +       + 
Sbjct: 204 -QIRYTFKAHESNVNH-LSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA--GSTIN 259

Query: 360 ALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
            +   P  +     +    D  V+ ++L +
Sbjct: 260 QIAFNPKLQ----WVAVGTDQGVKIFNLMT 285

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 95.0 bits (237), Expect = 5e-22
 Identities = 39/276 (14%), Positives = 81/276 (29%), Gaps = 58/276 (21%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
           W +  G     +  GHQ  V  +   P    ++ S   +  +++W+              
Sbjct: 103 WDLRTG-TTYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECKFSSAEKEN 160

Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFA-GTQDGAI 251
                           +++V          +  S P+ +           FA    DG +
Sbjct: 161 H---------------SDWVSC--------VRYS-PIMKSANKVQPFAPYFASVGWDGRL 196

Query: 252 LAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTL 309
             W  N            K H   V  L +  N   + +G  D  + +W++  L   Q  
Sbjct: 197 KVW--NTNFQIRYT---FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE 251

Query: 310 TEHTSVVMSLLCW--D-QFLLSCSLDKTIKVWFATDSGNLEVTYTHNE------------ 354
            +  S +   + +    Q++   + D+ +K++    + +     T               
Sbjct: 252 FDAGSTINQ-IAFNPKLQWVAVGT-DQGVKIFNL-MTQSKAPVCTIEAEPITKAEGQKGK 308

Query: 355 EHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDLPS 389
                +L       GK   L +   D  +R +   +
Sbjct: 309 NPQCTSLAWNAL--GK--KLFAGFTDGVIRTFSFET 340

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 82.3 bits (204), Expect = 1e-17
 Identities = 51/269 (18%), Positives = 86/269 (31%), Gaps = 64/269 (23%)

Query: 145 QLEGHQKVVSGITLPSGSD------KLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI 198
            LEGH   V+ I              L SGS+D+TV +W     +        G  G   
Sbjct: 16  ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN------GYFGIPH 69

Query: 199 SEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNV 258
                   G  +FV        +DL+LS                 + + D  +  W  ++
Sbjct: 70  K----ALTGHNHFV--------SDLALS-QENC---------FAISSSWDKTLRLW--DL 105

Query: 259 TTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLET--LQCIQTLTEHTS 314
            T          GH   V S+    +  ++ S   +  I++WN+             H+ 
Sbjct: 106 RTG--TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSD 163

Query: 315 VVMS------------LLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLAL 361
            V              +  +  +  S   D  +KVW       +  T+  H  E  V  L
Sbjct: 164 WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAH--ESNVNHL 219

Query: 362 CGMPDSEGKPVLLCSC-NDNSVRFYDLPS 389
              P+  GK   + +   D  +  +D+ +
Sbjct: 220 SISPN--GK--YIATGGKDKKLLIWDILN 244

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 81.1 bits (201), Expect = 3e-17
 Identities = 35/206 (16%), Positives = 65/206 (31%), Gaps = 41/206 (19%)

Query: 212 VKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA----------WKFNVTT- 260
           +     +      L G    V ++  G        +D  +L           W   +   
Sbjct: 7   LDIQVVKRGI---LEGHSDWVTSIVAGFSQKE--NEDSPVLISGSRDKTVMIW--KLYEE 59

Query: 261 ----NCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTS 314
                   P  +L GH+  V  L +        S S D ++R+W+L T    +    H S
Sbjct: 60  EQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQS 119

Query: 315 VVMSLLCW--D-QFLLSCSLDKTIKVWFATDSGNLEVTYT---HNEEHGVLALCGMPDSE 368
            V S + +  D + +LS   ++ IK+W          +     H+    V  +   P  +
Sbjct: 120 EVYS-VAFSPDNRQILSAGAEREIKLW-NILGECKFSSAEKENHS--DWVSCVRYSPIMK 175

Query: 369 GKPV------LLCSC-NDNSVRFYDL 387
                        S   D  ++ ++ 
Sbjct: 176 SANKVQPFAPYFASVGWDGRLKVWNT 201

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 12/57 (21%)

Query: 290 SMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD--------QFLLSCSLDKTIKVW 338
           + ++S+ +  ++       L  H+  V S++             L+S S DKT+ +W
Sbjct: 2   ADNSSLDIQVVKR----GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIW 54

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 2/48 (4%)

Query: 137 GDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQ 183
            +        +G     + +     G  KL++G  D  +R +   +  
Sbjct: 296 AEPITKAEGQKGKNPQCTSLAWNALGK-KLFAGFTDGVIRTFSFETSA 342

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 98.8 bits (247), Expect = 3e-23
 Identities = 58/265 (21%), Positives = 91/265 (34%), Gaps = 59/265 (22%)

Query: 138 DGFKLLTQLEGHQK-VVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG 195
           D   LL ++  H       +   P+G+  L S   D  +R+W                  
Sbjct: 3   DSLVLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK-------- 53

Query: 196 CMISEGPWIFIGVTNFVK--AWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA 253
                   +  G    V+  AW+           P G           L + + D     
Sbjct: 54  ------SVLSEGHQRTVRKVAWS-----------PCGN---------YLASASFDATTCI 87

Query: 254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLET---LQCIQT 308
           W      + FE   +L+GH   V S+    +   L + S D S+ VW ++     +C+  
Sbjct: 88  W--KKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV 145

Query: 309 LTEHTSVVMSLLCW---DQFLLSCSLDKTIKVW-FATDSGNLEVTYT-HNEEHGVLALCG 363
           L  HT  V   + W    + L S S D T+K++    D      T   H  E  V +L  
Sbjct: 146 LNSHTQDVKH-VVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAF 202

Query: 364 MPDSEGKPVLLCSC-NDNSVRFYDL 387
            P  +     L SC +D +VR +  
Sbjct: 203 DPSGQ----RLASCSDDRTVRIWRQ 223

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 93.8 bits (234), Expect = 1e-21
 Identities = 60/278 (21%), Positives = 93/278 (33%), Gaps = 71/278 (25%)

Query: 137 GDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG 195
                     EGHQ+ V  +   P G+  L S S D T  +W               E  
Sbjct: 48  DSWICKSVLSEGHQRTVRKVAWSPCGN-YLASASFDATTCIWKKNQDD--------FECV 98

Query: 196 CMISEGPWIFIGVTNFVK--AWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA 253
                      G  N VK  AW            P G          LL   ++D ++  
Sbjct: 99  -------TTLEGHENEVKSVAWA-----------PSGN---------LLATCSRDKSVWV 131

Query: 254 WKFNVTT-NCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLET--LQCIQ 307
           W   V   + +E  + L  H+  V  +V        L S S D++++++  E     C  
Sbjct: 132 W--EVDEEDEYECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCA 188

Query: 308 TLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVWFATD--------------SGNLEVTY 350
           TL  H S V SL  +D   Q L SCS D+T+++W                  S     T 
Sbjct: 189 TLEGHESTVWSL-AFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL 247

Query: 351 THNEEHGVLALCGMPDSEGKPVLLCS-CNDNSVRFYDL 387
           +      +  +     +      L + C D+++R +  
Sbjct: 248 SGFHSRTIYDIAWCQLTG----ALATACGDDAIRVFQE 281

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 82.6 bits (205), Expect = 9e-18
 Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 63/230 (27%)

Query: 134 WTVGDG-FKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLG 191
           W      F+ +T LEGH+  V  +   PSG+  L + S+D++V VW+         ++  
Sbjct: 88  WKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVS-- 144

Query: 192 GEVGCMISEGPWIFIGVTNFVK--AWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDG 249
                       +    T  VK   W+           P  +         LL + + D 
Sbjct: 145 ------------VLNSHTQDVKHVVWH-----------PSQE---------LLASASYDD 172

Query: 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNL------- 300
            +  +      + +   A+L+GH   V SL    +  +L S S D ++R+W         
Sbjct: 173 TVKLY--REEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ 230

Query: 301 --------ETLQCIQTLT-EHTSVVMSLLCW---DQFLLSCSLDKTIKVW 338
                    + +CI TL+  H+  +   + W      L +   D  I+V+
Sbjct: 231 GVACSGSDPSWKCICTLSGFHSRTIYD-IAWCQLTGALATACGDDAIRVF 279

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 37/228 (16%), Positives = 65/228 (28%), Gaps = 59/228 (25%)

Query: 137 GDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG 195
            D ++ ++ L  H + V  +   PS  + L S S D+TV+++            L G   
Sbjct: 137 EDEYECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHES 195

Query: 196 CMIS-----EGPWIFIGVT----NFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGT 246
            + S      G  +    +      V+ W      +                        
Sbjct: 196 TVWSLAFDPSGQRL---ASCSDDRTVRIWRQYLPGNEQGVACS--------------GSD 238

Query: 247 QDGAILAWKFNVTTNCFEPAASLKG-HSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETL 303
                +               +L G HS  +  +        L +   D++IRV+  +  
Sbjct: 239 PSWKCIC--------------TLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284

Query: 304 QCIQ---------TLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVW 338
              Q             H+  V  +  W       L SCS D  +  W
Sbjct: 285 SDPQQPTFSLTAHLHQAHSQDVNCV-AWNPKEPGLLASCSDDGEVAFW 331

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 71.1 bits (175), Expect = 6e-14
 Identities = 38/192 (19%), Positives = 63/192 (32%), Gaps = 36/192 (18%)

Query: 134 WTVGDG-FKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLG 191
           +   +  +     LEGH+  V  +   PSG  +L S S D TVR+W              
Sbjct: 177 YREEEDDWVCCATLEGHESTVWSLAFDPSGQ-RLASCSDDRTVRIWRQYL---------- 225

Query: 192 GEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGP-VGQVYAMAVGND--LLFAGTQD 248
                    G    +  +    +W        +LSG     +Y +A       L     D
Sbjct: 226 --------PGNEQGVACSGSDPSWKCIC----TLSGFHSRTIYDIAWCQLTGALATACGD 273

Query: 249 GAILAWKFNVTTNCFEPAAS-----LKGHSLAVVSLV---VGANKLYSGSMDNSIRVWNL 300
            AI  ++ +  ++  +P  S      + HS  V  +         L S S D  +  W  
Sbjct: 274 DAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKY 333

Query: 301 ETLQCIQTLTEH 312
           +  + +     H
Sbjct: 334 QRPEGLHHHHHH 345

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 13/96 (13%)

Query: 301 ETLQCIQTLTEHT-SVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH 356
           ++L  +  +  H  S     L W      L SC  D+ I++W  T+  +       +E H
Sbjct: 3   DSLVLLGRVPAHPDSRCWF-LAWNPAGTLLASCGGDRRIRIW-GTEGDSWICKSVLSEGH 60

Query: 357 --GVLALCGMPDSEGKPVLLCSC-NDNSVRFYDLPS 389
              V  +   P   G    L S   D +   +    
Sbjct: 61  QRTVRKVAWSPC--GN--YLASASFDATTCIWKKNQ 92

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 98.0 bits (245), Expect = 7e-23
 Identities = 15/276 (5%), Positives = 40/276 (14%), Gaps = 70/276 (25%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-GG 192
           + +  G K   +L+   +V+  I  P       +    +   +          +      
Sbjct: 51  YIINLG-KTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTP 109

Query: 193 EV--------GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFA 244
                                  +T+          + L     +               
Sbjct: 110 GTFTNQLQTSFSEPRLL-----ILTDPRTDHQPIKESALGNIPTIAFC------------ 152

Query: 245 GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLE 301
                                        +  V + +      K   G +   +    L+
Sbjct: 153 ------------------------DTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQ 188

Query: 302 TLQCIQTLTE-----HTSVVMSLLCWD----QFLLSCSLDKTIKVWFATDSGNLEVTYT- 351
               I    +                     +   +        V               
Sbjct: 189 MRGTILPGHKWDVMVDLFFYRD-PEEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEW 247

Query: 352 HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
                       +P          +           
Sbjct: 248 G--TDAAAQPAAIPA--QAGADWTA-APAPAAGGWD 278

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 93.0 bits (232), Expect = 4e-21
 Identities = 14/271 (5%), Positives = 40/271 (14%), Gaps = 71/271 (26%)

Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISE 200
           +   Q+     V  G              K  T  ++    G+                 
Sbjct: 16  EQDIQMMLAADVHLGTKN-CDFQMERYVYKRRTDGIYIINLGKTWEK------------- 61

Query: 201 GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV 258
                                   L      + A+    D  +  A       +      
Sbjct: 62  ------------------------LQLAARVIVAIENPQDIIVQSARPYGQRAVLK--FA 95

Query: 259 -TTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQ-------CIQ 307
             T           H+    +  +     ++     + +                     
Sbjct: 96  QYTGAHAI---AGRHTPGTFTNQLQTSF-SEPRLLILTDPRTDHQPIKESALGNIPTIAF 151

Query: 308 TLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHG----VL 359
             T+     +  +              L   +            +     +         
Sbjct: 152 CDTDSPMRYVD-IGIPANNKGKQSIGCLFWLLARM-VLQMRGTILPGHKWDVMVDLFFYR 209

Query: 360 ALC-GMPDSEGKPVLLCSCNDNSVRFYDLPS 389
                      +         +     +  +
Sbjct: 210 DPEEAKEQ--EEEEAALVA-PDYGAVAEYAA 237

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score =  100 bits (249), Expect = 7e-23
 Identities = 49/276 (17%), Positives = 87/276 (31%), Gaps = 61/276 (22%)

Query: 134 WTV-GDGFKLLTQLEGHQKVVSGITL--PSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190
           + V G+  KL+  L GH+  V  +    P     L S S D  V +W   +G+ + +   
Sbjct: 36  FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH 95

Query: 191 GG-------------EVGCMISEGPWIFIGVT----NFVKAWNTQTNTDLS---LSGPVG 230
                          E G ++         +       V     + N   S   +     
Sbjct: 96  AVHSASVNSVQWAPHEYGPLL---------LVASSDGKVSVVEFKENGTTSPIIIDAHAI 146

Query: 231 QVYAMA-----VGNDLLFAGTQDGAILA----------WKFNVTTNCFEPAASLKGHSLA 275
            V + +     +  D    GT++               WK+N     +   ++L+GHS  
Sbjct: 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 206

Query: 276 VVSL-----VVGANKLYSGSMDNSIRVWNLE--TLQCIQTLTE---HTSVVMSLLCW--D 323
           V  +     V+  + L S S D +  +W  +       +TL +      V+     W   
Sbjct: 207 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR-ASWSLS 265

Query: 324 -QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGV 358
              L     D  + +W     G  E     ++  G 
Sbjct: 266 GNVLALSGGDNKVTLWKENLEGKWEPAGEVHQGGGG 301

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 78.8 bits (194), Expect = 5e-16
 Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 15/132 (11%)

Query: 269 LKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLE--TLQCIQTLTEHTSVVMSLLCW- 322
              H+  +   V+   G  +L + S D +I+++ +E  T + I TLT H   V   + W 
Sbjct: 5   ANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWR-VDWA 62

Query: 323 ----DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE-EHGVLALCGMPDSEGKPVLLCSC 377
                  L SCS D  + +W   ++G       H      V ++   P   G  +LL + 
Sbjct: 63  HPKFGTILASCSYDGKVLIW-KEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVAS 120

Query: 378 NDNSVRFYDLPS 389
           +D  V   +   
Sbjct: 121 SDGKVSVVEFKE 132

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 78.5 bits (193), Expect = 7e-16
 Identities = 42/279 (15%), Positives = 80/279 (28%), Gaps = 84/279 (30%)

Query: 142 LLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISE 200
           ++     H +++    L   G  +L + S D+T+++++                      
Sbjct: 1   MVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGE------------------ 41

Query: 201 GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA------- 253
                           T    D +L+G  G V+ +       +A  + G ILA       
Sbjct: 42  ----------------THKLID-TLTGHEGPVWRVD------WAHPKFGTILASCSYDGK 78

Query: 254 ---WKFNVTTNCFEPAASLKGHSLAVVSLV----VGANKLYSGSMDNSIRVWNLETLQCI 306
              W        +   A    HS +V S+          L   S D  + V   +     
Sbjct: 79  VLIW--KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT 136

Query: 307 Q--TLTEHTSVVMSLLCW----------------DQFLLSCSLDKTIKVW-FATDSGNLE 347
               +  H   V S   W                 +  ++   D  +K+W + +D+    
Sbjct: 137 SPIIIDAHAIGVNS-ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195

Query: 348 VTYT---HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVR 383
           +  T   H+    V  +   P    +  L     D +  
Sbjct: 196 LESTLEGHS--DWVRDVAWSPTVLLRSYLASVSQDRTCI 232

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 75.0 bits (184), Expect = 9e-15
 Identities = 31/155 (20%), Positives = 47/155 (30%), Gaps = 26/155 (16%)

Query: 256 FNVTTNCFEPAASLKGHSLAVVSLVVGA-----NKLYSGSMDNSIRVWNLETLQCIQ--T 308
           F V     +   +L GH   V   V  A       L S S D  + +W  E  +  Q   
Sbjct: 36  FEVEGETHKLIDTLTGHEGPVWR-VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV 94

Query: 309 LTEHTSVVMSLLCW-----DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALC- 362
              H++ V S+  W        LL  S D  + V    ++G            GV +   
Sbjct: 95  HAVHSASVNSV-QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 153

Query: 363 ----------GMPDSEGKPVLLCSCNDNSVRFYDL 387
                          E +  +     DN V+ +  
Sbjct: 154 APATIEEDGEHNGTKESRKFVTGGA-DNLVKIWKY 187

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 11/87 (12%)

Query: 306 IQTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVW-FATDSGNLEVTYT-HNEEHGVLA 360
           +     H  ++      D   + L +CS DKTIK++    ++  L  T T H  E  V  
Sbjct: 2   VVIANAHNELIHDA-VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH--EGPVWR 58

Query: 361 LCGMPDSEGKPVLLCSC-NDNSVRFYD 386
           +       G   +L SC  D  V  + 
Sbjct: 59  VDWAHPKFGT--ILASCSYDGKVLIWK 83

>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Length = 753

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 32/215 (14%), Positives = 56/215 (26%), Gaps = 57/215 (26%)

Query: 134 WTVGDG---FKLLTQLEGHQKVVSGITL-PSGSDKLY--SGSKDETVRVW--DCASGQCA 185
           W        + L + LEGH   V  +   P+   + Y  S S+D T  +W  D   G   
Sbjct: 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 244

Query: 186 GVINLGGEVGCMISEGPWIFIGVTNFVK--AWNTQTNTDLSLSGPVGQVYAMAVGNDLLF 243
             +                     + +   +W+             G V  +A+      
Sbjct: 245 KTLL--------------KEEKFPDVLWRASWS-----------LSGNV--LALSGG--- 274

Query: 244 AGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETL 303
               D  +  WK N           L+G         V      SG    + + ++    
Sbjct: 275 ----DNKVTLWKEN-----------LEGKWEPAGE--VHQGGGGSGGGGATSKEFDGPCQ 317

Query: 304 QCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVW 338
             I  L    +  +            +   T   +
Sbjct: 318 NEIDLLFSECNDEIDNAKLIMKERRFTASYTFAKF 352

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 97.3 bits (243), Expect = 1e-22
 Identities = 34/225 (15%), Positives = 63/225 (28%), Gaps = 31/225 (13%)

Query: 143 LTQLEGHQKVVSGITLPSGSD--KLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISE 200
             Q+  H   V  I      +   + +GS D+T++ WD  S     V+ L     C    
Sbjct: 120 AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI 179

Query: 201 GPWIFIGV---TNFVKAWNTQTNTDLS-LSGPVGQVYAMAVGND------LLFAGTQDGA 250
            P   +        V     Q +      S    Q   +A+  D          G+ +G 
Sbjct: 180 YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR 239

Query: 251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK--------------LYSGSMDNSIR 296
           +     N   N  +   + K H     +     +               L +   D    
Sbjct: 240 VAIHYIN-PPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFS 298

Query: 297 VWNLETLQCIQTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVW 338
            W+ +    ++T  +    + +  C++         S     K  
Sbjct: 299 FWDKDARTKLKTSEQLDQPISA-CCFNHNGNIFAYASSYDWSKGH 342

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 79.6 bits (197), Expect = 1e-16
 Identities = 29/250 (11%), Positives = 66/250 (26%), Gaps = 55/250 (22%)

Query: 146 LEGHQKVVSGIT---LPSGSDKLYSGSKDETVRVWDC-ASGQCAGVINLGGEVGCMISEG 201
                  +  ++        + L +GS    VR W+   SGQ                  
Sbjct: 35  TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK-------------- 80

Query: 202 PWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT 259
                                 +     G V  +   +D   +F  + D     W  +++
Sbjct: 81  ----------------------AQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW--DLS 116

Query: 260 TNCFEPAASLKGHSLAVVSLVVGA----NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSV 315
           +N       +  H   V ++        + + +GS D +++ W+  +   +  L      
Sbjct: 117 SNQAIQ---IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERC 173

Query: 316 V-MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLL 374
               ++     + +      +       S    +      +H    +    D + KP   
Sbjct: 174 YCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPL--KHQHRCVAIFKDKQNKPTGF 231

Query: 375 CSC-NDNSVR 383
                +  V 
Sbjct: 232 ALGSIEGRVA 241

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 78.8 bits (195), Expect = 2e-16
 Identities = 35/239 (14%), Positives = 77/239 (32%), Gaps = 41/239 (17%)

Query: 134 WTVGDGFKLLTQ-LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
           W V D  + + +  + H   V  +       K+++ S D+T ++WD +S Q    I +  
Sbjct: 69  WEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA---IQIAQ 125

Query: 193 ------EVGCMIS-EGPWIFIGVT----NFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND 240
                  +  + +     +   +T      +K W+T+++  +  L  P  + Y   V   
Sbjct: 126 HDAPVKTIHWIKAPNYSCV---MTGSWDKTLKFWDTRSSNPMMVLQLP-ERCYCADVIYP 181

Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLV----VGANKLYSGSMDNSIR 296
           +    T +  ++ ++     + F    S   H    V++             GS++  + 
Sbjct: 182 MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVA 241

Query: 297 VWNLETLQCIQ---TLTEHTSVVMSLLCWD--------------QFLLSCSLDKTIKVW 338
           +  +      +   T   H S   +                     L +   D     W
Sbjct: 242 IHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW 300

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 37/241 (15%), Positives = 79/241 (32%), Gaps = 67/241 (27%)

Query: 159 PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQ 218
            SG+    S + D    + D                                       +
Sbjct: 12  TSGTSMFGSATTDNHNPMKD--------------------------------------IE 33

Query: 219 TNTDLSLSGPVGQVYAMA-----VGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHS 273
                  S P   +  ++     +  + L AG+    +  W   V  +      + + H+
Sbjct: 34  V-----TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCW--EVQDSGQTIPKAQQMHT 86

Query: 274 LAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD-----QFL 326
             V+ +    +  K+++ S D + ++W+L + Q IQ + +H + V + + W        +
Sbjct: 87  GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKT-IHWIKAPNYSCV 144

Query: 327 LSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386
           ++ S DKT+K W    S N  +     E      +         P+ + +  +  +  Y 
Sbjct: 145 MTGSWDKTLKFWDT-RSSNPMMVLQLPERCYCADVIY-------PMAVVATAERGLIVYQ 196

Query: 387 L 387
           L
Sbjct: 197 L 197

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 20/127 (15%)

Query: 268 SLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSL-----LCW 322
           SL G +    +   G +   S + DN   + ++E              +  L        
Sbjct: 2   SLFGTTSGFGT--SGTSMFGSATTDNHNPMKDIEVTSS------PDDSIGCLSFSPPTLP 53

Query: 323 DQFLLSCSLDKTIKVWFATDSGN--LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN 380
             FL++ S    ++ W   DSG    +    H     VL +C   D  G  V   SC D 
Sbjct: 54  GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMH--TGPVLDVCWSDD--GSKVFTASC-DK 108

Query: 381 SVRFYDL 387
           + + +DL
Sbjct: 109 TAKMWDL 115

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 17/187 (9%), Positives = 35/187 (18%), Gaps = 35/187 (18%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGS---DKLYSGSKDETVRVWDCASGQCAGVIN 189
                  +        +     + +             GS +  V +        A    
Sbjct: 197 LENQPS-EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKD-- 253

Query: 190 LGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ 247
                               NF    +    T+ S    +  V  +A       L     
Sbjct: 254 --------------------NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS 293

Query: 248 DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQC 305
           DG    W  +          + +     + +     N       S  +  +       Q 
Sbjct: 294 DGRFSFW--DKDAR--TKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQK 349

Query: 306 IQTLTEH 312
              +   
Sbjct: 350 KNYIFLR 356

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 96.6 bits (241), Expect = 2e-22
 Identities = 43/210 (20%), Positives = 76/210 (36%), Gaps = 44/210 (20%)

Query: 142 LLTQLEGHQKVVSGIT----LPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM 197
           + +  E H + + G+        G   +++      V +++C S     +  L   V   
Sbjct: 10  VNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--LQSYVDAD 67

Query: 198 ISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFN 257
             E    F        AW   +NT                 + LL      G I     N
Sbjct: 68  ADEN---FYTC-----AWTYDSNTS----------------HPLLAVAGSRGIIRII--N 101

Query: 258 VTTNCFEPAASLKGHSLAVVSLV---VGANKLYSGSMDNSIRVWNLETLQCIQT---LTE 311
             T   +      GH  A+  L       N L S S D+++R+WN++T   +     +  
Sbjct: 102 PIT--MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 159

Query: 312 HTSVVMSLLCWD---QFLLSCSLDKTIKVW 338
           H   V+S   +D   + ++SC +D ++K+W
Sbjct: 160 HRDEVLS-ADYDLLGEKIMSCGMDHSLKLW 188

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 92.7 bits (231), Expect = 4e-21
 Identities = 37/287 (12%), Positives = 83/287 (28%), Gaps = 57/287 (19%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LG 191
                  + +    GH   ++ +   P   + L S SKD  +R+W+  +     +   + 
Sbjct: 100 INPITM-QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE 158

Query: 192 GEVGCMIS-----EGPWIFIGVT----NFVKAWNTQTNTDLS-LSGPVGQVYAMAVGNDL 241
           G    ++S      G  I   ++    + +K W   +   ++ +                
Sbjct: 159 GHRDEVLSADYDLLGEKI---MSCGMDHSLKLWRINSKRMMNAIKESY------------ 203

Query: 242 LFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLE 301
                 +       F      F   ++   H   V  +    + + S S +N+I  W   
Sbjct: 204 --DYNPNKTNRP--FISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPG 259

Query: 302 TLQ--------------CIQTLTEHTSVVMSLL----CWDQFLLSCSLDKTIKVW-FATD 342
            ++               +         +  +      W + L   +    + VW    +
Sbjct: 260 KMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319

Query: 343 SGNLEVTYT---HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386
             +     T   H     +       D     +L+  C+D S+  +D
Sbjct: 320 DPHKAKCTTLTHHKCGAAIRQTSFSRD--SS-ILIAVCDDASIWRWD 363

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 92.3 bits (230), Expect = 6e-21
 Identities = 38/306 (12%), Positives = 82/306 (26%), Gaps = 90/306 (29%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL------PSGS---DKLYSGSKDETVRVWDCASGQC 184
           +        +  L+ +    +             +     L        +R+ +  + QC
Sbjct: 49  YECHSQ-GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC 107

Query: 185 AGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFA 244
                               ++G  N +         +L                 LL +
Sbjct: 108 IKH-----------------YVGHGNAI--------NELKFHPRDPN---------LLLS 133

Query: 245 GTQDGAILAWKFNVTT-NCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLE 301
            ++D A+  W  N+ T         ++GH   V+S        K+ S  MD+S+++W + 
Sbjct: 134 VSKDHALRLW--NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191

Query: 302 TLQCIQTLTEHTSVVMSLLC----------WD------------------QFLLSCSLDK 333
           + + +  + E      +              D                    +LS S + 
Sbjct: 192 SKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCEN 251

Query: 334 TIKVWFATDSGNLEVTYTHNE------------EHGVLALCGMPDSEGKPVLLCSCNDNS 381
            I  W      +       +E            +  +  +    D   K + L +     
Sbjct: 252 AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN-QVGK 310

Query: 382 VRFYDL 387
           +  +DL
Sbjct: 311 LYVWDL 316

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 81.9 bits (203), Expect = 2e-17
 Identities = 33/170 (19%), Positives = 58/170 (34%), Gaps = 28/170 (16%)

Query: 238 GNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV-----------GANKL 286
           G+ L+FA      +  +     +        L+ +  A                     L
Sbjct: 33  GDPLVFATVGSNRVTLY--ECHSQ--GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLL 88

Query: 287 YSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVWFATD 342
                   IR+ N  T+QCI+    H + +   L +       LLS S D  +++W    
Sbjct: 89  AVAGSRGIIRIINPITMQCIKHYVGHGNAINE-LKFHPRDPNLLLSVSKDHALRLW-NIQ 146

Query: 343 SGNLEVTYTHNEEH--GVLALCGMPDSEGKPVLLCSC-NDNSVRFYDLPS 389
           +  L   +   E H   VL+       E     + SC  D+S++ + + S
Sbjct: 147 TDTLVAIFGGVEGHRDEVLSADYDLLGE----KIMSCGMDHSLKLWRINS 192

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 95.4 bits (238), Expect = 2e-22
 Identities = 45/268 (16%), Positives = 83/268 (30%), Gaps = 60/268 (22%)

Query: 137 GDGFKLLTQLEGHQKVVSGIT--LPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG-- 192
           G+  KL+  L GH+  V  +    P     L S S D  V +W   +G+ + +       
Sbjct: 40  GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHS 99

Query: 193 -----------EVGCMISEGPWIFIGVT----NFVKAWNTQTNTDLS---LSGPVGQVYA 234
                      E G M+         +       V     + N   S   +      V +
Sbjct: 100 ASVNSVQWAPHEYGPML---------LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 150

Query: 235 MA-----VGNDLLFAGTQDGAILA----------WKFNVTTNCFEPAASLKGHSLAVVSL 279
            +     +  D    GT++               WK+N     +   ++L+GHS  V  +
Sbjct: 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 210

Query: 280 -----VVGANKLYSGSMDNSIRVWNLET-----LQCIQTLTEHTSVVMSLLCW---DQFL 326
                V+  + + S S D +  +W  +       + +    +   V+     W      L
Sbjct: 211 AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR-ASWSLSGNVL 269

Query: 327 LSCSLDKTIKVWFATDSGNLEVTYTHNE 354
                D  + +W     G  E     ++
Sbjct: 270 ALSGGDNKVTLWKENLEGKWEPAGEVHQ 297

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 78.0 bits (193), Expect = 2e-16
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 15/134 (11%)

Query: 267 ASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLE--TLQCIQTLTEHTSVVMSLLC 321
                H+  +   V+   G  ++ + S D +I+++ +E  T + I TLT H   V   + 
Sbjct: 3   VIANAHNEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWR-VD 60

Query: 322 W-----DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE-EHGVLALCGMPDSEGKPVLLC 375
           W        L SCS D  + +W   ++G       H      V ++   P   G  +LL 
Sbjct: 61  WAHPKFGTILASCSYDGKVMIW-KEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLV 118

Query: 376 SCNDNSVRFYDLPS 389
           + +D  V   +   
Sbjct: 119 ASSDGKVSVVEFKE 132

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 77.3 bits (191), Expect = 4e-16
 Identities = 38/279 (13%), Positives = 80/279 (28%), Gaps = 84/279 (30%)

Query: 142 LLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISE 200
           ++     H +++    +   G  ++ + S D+T+++++                   +  
Sbjct: 1   MVVIANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFE-------------------VEG 40

Query: 201 GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA------- 253
                I                 +L+G  G V+ +       +A  + G ILA       
Sbjct: 41  ETHKLID----------------TLTGHEGPVWRVD------WAHPKFGTILASCSYDGK 78

Query: 254 ---WKFNVTTNCFEPAASLKGHSLAVVSLV----VGANKLYSGSMDNSIRVWNLETLQCI 306
              W        +   A    HS +V S+          L   S D  + V   +     
Sbjct: 79  VMIW--KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT 136

Query: 307 Q--TLTEHTSVVMSLLCW----------------DQFLLSCSLDKTIKVW-FATDSGNLE 347
               +  H   V S   W                 +  ++   D  +K+W + +D+    
Sbjct: 137 SPIIIDAHAIGVNS-ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195

Query: 348 VTYT---HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVR 383
           +  T   H+    V  +   P    +  +     D +  
Sbjct: 196 LESTLEGHS--DWVRDVAWSPTVLLRSYMASVSQDRTCI 232

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 30/154 (19%), Positives = 47/154 (30%), Gaps = 24/154 (15%)

Query: 256 FNVTTNCFEPAASLKGHSLAVVSLVVGANK----LYSGSMDNSIRVWNLETLQCIQ--TL 309
           F V     +   +L GH   V  +     K    L S S D  + +W  E  +  Q    
Sbjct: 36  FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH 95

Query: 310 TEHTSVVMSLLCW-----DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALC-- 362
             H++ V S+  W        LL  S D  + V    ++G            GV +    
Sbjct: 96  AVHSASVNSV-QWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 154

Query: 363 ---------GMPDSEGKPVLLCSCNDNSVRFYDL 387
                         E +  +     DN V+ +  
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGA-DNLVKIWKY 187

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Length = 297

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 11/87 (12%)

Query: 306 IQTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVW-FATDSGNLEVTYT-HNEEHGVLA 360
           +     H  ++      D   + + +CS DKTIK++    ++  L  T T H  E  V  
Sbjct: 2   VVIANAHNEMIHDA-VMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGH--EGPVWR 58

Query: 361 LCGMPDSEGKPVLLCSC-NDNSVRFYD 386
           +       G   +L SC  D  V  + 
Sbjct: 59  VDWAHPKFGT--ILASCSYDGKVMIWK 83

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 94.6 bits (236), Expect = 1e-21
 Identities = 41/225 (18%), Positives = 72/225 (32%), Gaps = 51/225 (22%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
           W +  G +    L     V +    P     + +GS D  VRVWD  +G           
Sbjct: 192 WDLRTG-QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV-------- 242

Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAI 251
                                     + + S +G    VY++    D   + +G+ D ++
Sbjct: 243 ----------------------ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280

Query: 252 LAWKFNVTTNCFEPAAS--------LKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLE 301
             W      N  +              GH   V+S+    N   + SGS D  +  W+ +
Sbjct: 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 340

Query: 302 TLQCIQTLTEHTSVVMS-------LLCWD-QFLLSCSLDKTIKVW 338
           +   +  L  H + V+S        L  +     + S D   ++W
Sbjct: 341 SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 86.9 bits (216), Expect = 4e-19
 Identities = 49/265 (18%), Positives = 89/265 (33%), Gaps = 48/265 (18%)

Query: 139 GFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINL------- 190
                 Q   H K +    L       +    K +T   +   +      I++       
Sbjct: 4   YLVPYNQRANHSKPIPPFLLDLDSQ-SVPDALKKQTNDYYILYNPALPREIDVELHKSLD 62

Query: 191 -GGEVGC-MIS-EGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGT 246
               V C   S +G ++  G     + +     + +  LS            N      +
Sbjct: 63  HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 122

Query: 247 QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCI 306
                      + + CF P     G  LA            +G+ D  IR+W++E  + +
Sbjct: 123 DLY--------IRSVCFSP----DGKFLA------------TGAEDRLIRIWDIENRKIV 158

Query: 307 QTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCG 363
             L  H   + S L +      L+S S D+T+++W    +G   +T +   E GV  +  
Sbjct: 159 MILQGHEQDIYS-LDYFPSGDKLVSGSGDRTVRIWDL-RTGQCSLTLSI--EDGVTTVAV 214

Query: 364 MPDSEGKPVLLCSC-NDNSVRFYDL 387
            P  +GK   + +   D +VR +D 
Sbjct: 215 SP-GDGK--YIAAGSLDRAVRVWDS 236

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 84.2 bits (209), Expect = 4e-18
 Identities = 59/302 (19%), Positives = 108/302 (35%), Gaps = 96/302 (31%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDK------------------LYSGSKDETVR 175
           + V DG  L+ +L             + S                    L +G++D  +R
Sbjct: 90  YRVSDG-SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIR 148

Query: 176 VWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAM 235
           +WD  + +   +                                     L G    +Y++
Sbjct: 149 IWDIENRKIVMI-------------------------------------LQGHEQDIYSL 171

Query: 236 AVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV----GANKLYSG 289
                   L +G+ D  +  W  ++ T   + + +L      V ++ V    G   + +G
Sbjct: 172 DYFPSGDKLVSGSGDRTVRIW--DLRTG--QCSLTLSIED-GVTTVAVSPGDG-KYIAAG 225

Query: 290 SMDNSIRVWNLETLQCIQTLTE-------HTSVVMSLLCWD---QFLLSCSLDKTIKVW- 338
           S+D ++RVW+ ET   ++ L         H   V S + +    Q ++S SLD+++K+W 
Sbjct: 226 SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS-VVFTRDGQSVVSGSLDRSVKLWN 284

Query: 339 ----------FATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
                        +SG  EVTY  H  +  VL++    +   + +L  S  D  V F+D 
Sbjct: 285 LQNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQN--DEYILSGS-KDRGVLFWDK 339

Query: 388 PS 389
            S
Sbjct: 340 KS 341

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 60.3 bits (147), Expect = 3e-10
 Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 43/186 (23%)

Query: 134 WTVGDGFKLLT------QLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAG 186
           W    GF +           GH+  V  +     G   + SGS D +V++W+  +     
Sbjct: 234 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKS 292

Query: 187 VINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGT 246
                    C        +IG  +FV +        ++ +    +          + +G+
Sbjct: 293 DSKTPNSGTCE-----VTYIGHKDFVLS--------VATT-QNDE---------YILSGS 329

Query: 247 QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--------NKLYSGSMDNSIRVW 298
           +D  +L W  +  +    P   L+GH  +V+S+ V          N   +GS D   R+W
Sbjct: 330 KDRGVLFW--DKKSG--NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385

Query: 299 NLETLQ 304
             + + 
Sbjct: 386 KYKKIA 391

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 35/154 (22%)

Query: 265 PAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNL-------ETLQCIQTLTEHTSV 315
           P      HS  +   ++  +   +       +   + L       E    +    +HTSV
Sbjct: 7   PYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSV 66

Query: 316 VMSLLCW--D-QFLLSCSLDKTIKVW----------------FATDSGNLEVTYTHNEEH 356
           V   + +  D ++L +   +KT +V+                   D  NL  + + + + 
Sbjct: 67  VCC-VKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 124

Query: 357 GVLALCGMPDSEGKPVLLCSC-NDNSVRFYDLPS 389
            + ++C  PD +     L +   D  +R +D+ +
Sbjct: 125 YIRSVCFSPDGK----FLATGAEDRLIRIWDIEN 154

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 95.1 bits (237), Expect = 1e-21
 Identities = 40/277 (14%), Positives = 80/277 (28%), Gaps = 57/277 (20%)

Query: 135 TVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
              +    + +   H   V  +       + L SG  +  + +WD      +        
Sbjct: 98  EANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT 157

Query: 194 VGCMISEGPWIFIGVTNFVK--AWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAI 251
            G          +   + V   AWN            +  V           +       
Sbjct: 158 PG--------QSMSSVDEVISLAWNQS----------LAHV---------FASAGSSNFA 190

Query: 252 LAWKFNVTTN----CFEPAASLKGHSLAVVSLVV---GANKLYSGS---MDNSIRVWNLE 301
             W  ++            +   G    +  +      + ++ + +    D SI +W+L 
Sbjct: 191 SIW--DLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248

Query: 302 TLQC-IQTLTE-HTSVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNLEVTYT-HNE 354
                +QTL + H   ++S L W    +  LLS   D T+ +W   +S      +     
Sbjct: 249 NANTPLQTLNQGHQKGILS-LDWCHQDEHLLLSSGRDNTVLLW-NPESAEQLSQFPARG- 305

Query: 355 EHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDLPSV 390
            +        P++   P L      DN +    L ++
Sbjct: 306 -NWCFKTKFAPEA---PDLFACASFDNKIEVQTLQNL 338

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 81.2 bits (201), Expect = 5e-17
 Identities = 38/271 (14%), Positives = 73/271 (26%), Gaps = 65/271 (23%)

Query: 143 LTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEG 201
            T    H K+   ++   SG+    + S D ++ +W   +      I             
Sbjct: 16  ATFAWSHDKIPLLVSGTVSGT-VDANFSTDSSLELWSLLAADSEKPIA------------ 62

Query: 202 PWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT 259
                                 SL     +   +   ++  ++     +G++  +  N  
Sbjct: 63  ----------------------SLQVD-SKFNDLDWSHNNKIIAGALDNGSLELYSTNEA 99

Query: 260 TNCFEPAASLKGHSLAVVSLV---VGANKLYSGSMDNSIRVWNLETLQCI---------Q 307
            N     A    HS +V ++       N L SG  +  I +W++                
Sbjct: 100 NNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG 159

Query: 308 TLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHG----VL 359
                   V+S L W         S        +W       +      +   G    + 
Sbjct: 160 QSMSSVDEVIS-LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLS 218

Query: 360 ALCGMPDSEGKPVLL---CSCNDNSVRFYDL 387
            +   P       +     S ND S+  +DL
Sbjct: 219 VVEWHPK--NSTRVATATGSDNDPSILIWDL 247

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 35/247 (14%), Positives = 70/247 (28%), Gaps = 60/247 (24%)

Query: 167 SGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS 226
               + ++ ++       A                   F   ++ VK         +  +
Sbjct: 84  GALDNGSLELYSTNEANNAI-------------NSMARFSNHSSSVKT--------VKFN 122

Query: 227 GPVGQVYAMAVGNDLLFA-GTQDGAILAWKFN-----VTTNCFEPAASLKGHSLAVVSLV 280
                          + A G  +G I  W  N      +                V+SL 
Sbjct: 123 AKQDN----------VLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172

Query: 281 V---GANKLYSGSMDNSIRVWNLETLQCIQTLTE------HTSVVMSLLCWD----QFLL 327
                A+   S    N   +W+L+  + +  L+           +   + W       + 
Sbjct: 173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV-VEWHPKNSTRVA 231

Query: 328 SCS---LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMP-DSEGKPVLLCSC-NDNSV 382
           + +    D +I +W   ++     T     + G+L+L     D      LL S   DN+V
Sbjct: 232 TATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH----LLLSSGRDNTV 287

Query: 383 RFYDLPS 389
             ++  S
Sbjct: 288 LLWNPES 294

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 31/248 (12%), Positives = 62/248 (25%), Gaps = 81/248 (32%)

Query: 168 GSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSG 227
           G+    V++ + +                                 AW            
Sbjct: 1   GAMGSMVKLAEFSRTATF----------------------------AW-----------S 21

Query: 228 PVGQVYAMAVGNDLLFAGTQDGAILA----------WKFNVTTNCFEPAASLKGHSLAVV 277
                  +        +GT  G + A          W      +  +P ASL+  S    
Sbjct: 22  HDKIPLLV--------SGTVSGTVDANFSTDSSLELWSLL-AADSEKPIASLQVDS-KFN 71

Query: 278 SLVVGAN--KLYSGSMDNSIRVWNLETLQ----CIQTLTEHTSVVMSLLCW----DQFLL 327
            L    N   +     + S+ +++          +   + H+S V + + +    D  L 
Sbjct: 72  DLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKT-VKFNAKQDNVLA 130

Query: 328 SCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDS--------EGKPVLLCSCND 379
           S   +  I +W   D      + ++             D             V   + + 
Sbjct: 131 SGGNNGEIFIW---DMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS 187

Query: 380 NSVRFYDL 387
           N    +DL
Sbjct: 188 NFASIWDL 195

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 94.0 bits (234), Expect = 2e-21
 Identities = 46/277 (16%), Positives = 81/277 (29%), Gaps = 68/277 (24%)

Query: 134 WTVGDGFKLLTQ------LEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAG 186
           W + DG  +L        LEGH K V  +   P+  + L S   D  + VWD  +G    
Sbjct: 109 WEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL 168

Query: 187 VINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFA 244
                                               L        +Y++    D  L+  
Sbjct: 169 T-----------------------------------LGPDVHPDTIYSVDWSRDGALICT 193

Query: 245 GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKL----YSGSMDNSIRVW 298
             +D  +              A   + H        V     K+    +S   +  + +W
Sbjct: 194 SCRDKRVRVI--EPRKG-TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALW 250

Query: 299 NLETLQCIQTLTE--HTSVVMSLLCWD----QFLLSCSLDKTIKVW-FATDSGNLEVTYT 351
           + + L+   +L E   +S V+    +D       L    D +I+ +   +++  L     
Sbjct: 251 DTKHLEEPLSLQELDTSSGVLL-PFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM 309

Query: 352 HNEEHGVLALCGMPDSEGKPVLLCSCNDNS-VRFYDL 387
            + +     +  MP            N     RFY L
Sbjct: 310 FSSKESQRGMGYMPKR------GLEVNKCEIARFYKL 340

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 85.1 bits (211), Expect = 2e-18
 Identities = 46/267 (17%), Positives = 82/267 (30%), Gaps = 47/267 (17%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
              G   K +  + GH   V  I   P   + + SGS+D TV VW+   G     +    
Sbjct: 65  GKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL---- 120

Query: 193 EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMA---VGNDLLFAGTQDG 249
                                         ++L G   +V  +A      ++L +   D 
Sbjct: 121 --------------------------REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN 154

Query: 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQ 307
            IL W  +V T           H   + S+    +   + +   D  +RV        + 
Sbjct: 155 VILVW--DVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA 212

Query: 308 TLTEHT----SVVMSLLCWDQFLLSC---SLDKTIKVWFATDSGNLEVTYTHNEEHGVLA 360
                      V    +   + L +      ++ + +W              +   GVL 
Sbjct: 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLL 272

Query: 361 LCGMPDSEGKPVLLCSCNDNSVRFYDL 387
               PD     V LC   D+S+R++++
Sbjct: 273 PFFDPD--TNIVYLCGKGDSSIRYFEI 297

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 39/184 (21%), Positives = 62/184 (33%), Gaps = 23/184 (12%)

Query: 221 TDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVV 277
            D+ +S         AV      L+   +  GA L      T    +    + GH+  V+
Sbjct: 26  EDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVL 85

Query: 278 SLV---VGANKLYSGSMDNSIRVWNLET-------LQCIQTLTEHTSVVMSLLCW----D 323
            +       N + SGS D ++ VW +          + + TL  HT  V   + W     
Sbjct: 86  DIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI-VAWHPTAQ 144

Query: 324 QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS-CNDNSV 382
             LLS   D  I VW       +           + ++    D      L+C+ C D  V
Sbjct: 145 NVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA----LICTSCRDKRV 200

Query: 383 RFYD 386
           R  +
Sbjct: 201 RVIE 204

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 62.0 bits (151), Expect = 8e-11
 Identities = 33/207 (15%), Positives = 63/207 (30%), Gaps = 26/207 (12%)

Query: 134 WTVGDGFKLLT-QLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLG 191
           W VG G  +LT   + H   +  +     G+  + +  +D+ VRV +   G      +  
Sbjct: 159 WDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA-LICTSCRDKRVRVIEPRKGTVVAEKDRP 217

Query: 192 GEVG-----CMISEGPWIFIGVTNF----VKAWNTQTNTD---LSLSGPVGQVYAMAV-- 237
            E         +SEG  +  G +      V  W+T+   +   L        V       
Sbjct: 218 HEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDP 277

Query: 238 -GNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHS--LAVVSLVVGANKLYSGSMDNS 294
             N +   G  D +I  ++             L   S   +   +     +    +    
Sbjct: 278 DTNIVYLCGKGDSSIRYFEITSEAPFLHY---LSMFSSKESQRGMGYMPKRGLEVNKCEI 334

Query: 295 IRVWNLETLQCIQ---TLTEHTSVVMS 318
            R + L   +C     T+   + +   
Sbjct: 335 ARFYKLHERKCEPIAMTVPRKSDLFQE 361

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 93.7 bits (233), Expect = 3e-21
 Identities = 31/274 (11%), Positives = 79/274 (28%), Gaps = 59/274 (21%)

Query: 141 KLLTQL-EGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI 198
           KL+  L E     ++   + P  +  L +GS    +++W+                    
Sbjct: 53  KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV-------------- 98

Query: 199 SEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAV--GNDLLFAGTQDGAILAWKF 256
                              +  +          V  + +    D     ++DG I+  K 
Sbjct: 99  ------------------GEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKV 140

Query: 257 NVTTNCFEPAAS------------LKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLE 301
           N      E                   +  AV          + L + +  + + ++++ 
Sbjct: 141 NHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR 200

Query: 302 TLQCIQTLT--EHTSVVMSLLCWD---QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH 356
           TL+ +Q +        V S +C D     L+  +    I +W       L  +++  +  
Sbjct: 201 TLERLQIIENSPRHGAVSS-ICIDEECCVLILGTTRGIIDIWDIR-FNVLIRSWSFGDHA 258

Query: 357 GVLALCGMPD-SEGKPVLLCSCNDNSVRFYDLPS 389
            +  +       +   +++   +   +  ++   
Sbjct: 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK 292

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 89.1 bits (221), Expect = 1e-19
 Identities = 37/267 (13%), Positives = 69/267 (25%), Gaps = 67/267 (25%)

Query: 145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG--------- 195
                   V+ IT+    D     SKD  + V      Q    +                
Sbjct: 106 LTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNF 165

Query: 196 ----------CMISEGPWIFIGVTN--FVKAWNTQTNTDL-SLSGPV--GQVYAMAVGND 240
                       ++E   + + +TN   V  ++ +T   L  +      G V ++ +  +
Sbjct: 166 GKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE 225

Query: 241 --LLFAGTQDGAILAWKFNVTTNCFEPAASLK-GHSLAVVSLVVGANK------LYSGSM 291
             +L  GT  G I  W  ++  N      S   G    +  + V          +  GS 
Sbjct: 226 CCVLILGTTRGIIDIW--DIRFN--VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS 281

Query: 292 DNSIRVWNLETLQCIQTLTEHTSVVMSL-------------------------LCW--DQ 324
              + +WN     C                                       +    D+
Sbjct: 282 KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDK 341

Query: 325 FLLSCSLDKTIKVWFATDSGNLEVTYT 351
            LL+     +I ++       L  +  
Sbjct: 342 ILLTDEATSSIVMF---SLNELSSSKA 365

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 85.2 bits (211), Expect = 3e-18
 Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 46/280 (16%)

Query: 143 LTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS-- 199
           L     ++  V            L + +    V ++D  + +   +I      G + S  
Sbjct: 162 LKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSIC 221

Query: 200 ---EGPWIFIG-VTNFVKAWNTQTNTDLS-----LSGPVGQVYAMAVGND---LLFAGTQ 247
              E   + +G     +  W+ + N  +         P+  V           ++  G+ 
Sbjct: 222 IDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS 281

Query: 248 DGAILAWKF--------------NVTTNCFEP-------AASLKGHSLAVVSLVVGANK- 285
              +  W F                +   F P              SL  +S +  +N  
Sbjct: 282 KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDK 341

Query: 286 -LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSG 344
            L +    +SI +++L  L   + +   +      +   Q   + +L   ++    T + 
Sbjct: 342 ILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFI-PTQV--TANLTMLLRKMKRTSTH 398

Query: 345 NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVR 383
           +++ +  H++    ++ C + ++     LL +C N   + 
Sbjct: 399 SVDDSLYHHDIINSISTCEVDETP----LLVACDNSGLIG 434

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 81.0 bits (200), Expect = 7e-17
 Identities = 21/193 (10%), Positives = 53/193 (27%), Gaps = 23/193 (11%)

Query: 151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVT- 209
            V         S  +  GS    + +W+   G C        E   M    P        
Sbjct: 262 HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPI---EKGL 318

Query: 210 NFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASL 269
             +     ++   LS              + +L       +I+ +  ++       + ++
Sbjct: 319 EELNFCGIRSLNALSTISVSN--------DKILLTDEATSSIVMF--SLNEL--SSSKAV 366

Query: 270 KGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD----QF 325
              S      +       + ++   +R     +   +     H  ++ S+   +      
Sbjct: 367 ISPSRFSDVFIPTQ---VTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPL 423

Query: 326 LLSCSLDKTIKVW 338
           L++C     I ++
Sbjct: 424 LVACDNSGLIGIF 436

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 92.0 bits (229), Expect = 7e-21
 Identities = 44/293 (15%), Positives = 85/293 (29%), Gaps = 71/293 (24%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSG------SDKLYSGSKDETVRVWDCASGQCAGV 187
           W +      +  ++GH+++++ I    G      + ++ +GS+D TV+VWD         
Sbjct: 95  WNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA 154

Query: 188 INLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQ 247
                              G       W        +      +V           AG  
Sbjct: 155 N-------------MEPVQGENKRD-CWTVAFGNAYN---QEERVVC---------AGYD 188

Query: 248 DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLV-----VGANKLYSGSMDNSIRVWNLET 302
           +G I  +  ++                 V SL      +  NKL + S++    V+++ T
Sbjct: 189 NGDIKLF--DLRNMA---LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243

Query: 303 LQ-----CIQTLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNLEVTYTHN 353
                     +   H S V   +       +  L+      + +W            +  
Sbjct: 244 QHPTKGFASVSEKAHKSTVWQ-VRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEG 302

Query: 354 EEHGVLALCGM-----------------PDSEGKPVLLCSCNDNSVRFYDLPS 389
            E GV     +                 PD   + + +CS  D +VR   +  
Sbjct: 303 IEMGVAGSVSLLQNVTLSTQPISSLDWSPD--KRGLCVCSSFDQTVRVLIVTK 353

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 87.8 bits (218), Expect = 2e-19
 Identities = 37/283 (13%), Positives = 85/283 (30%), Gaps = 71/283 (25%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITL----PSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189
           + +  G   L +     K +   T           L +G     + +W+  + +      
Sbjct: 49  YEIQHGDLKLLREIEKAKPIKCGTFGATSLQQR-YLATGDFGGNLHIWNLEAPEMPV--- 104

Query: 190 LGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ 247
                        +   G    + A              +  +  + +G     +  G++
Sbjct: 105 -------------YSVKGHKEIINA--------------IDGIGGLGIGEGAPEIVTGSR 137

Query: 248 DGAILAWKFNVTT-----NCFEPAASLKGHSLAVVSLVVGAN-------KLYSGSMDNSI 295
           DG +  W  +           EP   ++G +      V   N        + +G  +  I
Sbjct: 138 DGTVKVW--DPRQKDDPVANMEP---VQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDI 192

Query: 296 RVWNLETLQCIQTLTEHTSVVMSLLCWD------QFLLSCSLDKTIKVW----FATDSGN 345
           ++++L     ++  T   + V S L +D        L++ SL+    V+         G 
Sbjct: 193 KLFDLRN-MALRWETNIKNGVCS-LEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF 250

Query: 346 LEVTYT-HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
             V+   H  +  V  +  +P    + + L +     +  +  
Sbjct: 251 ASVSEKAH--KSTVWQVRHLPQ--NRELFLTAGGAGGLHLWKY 289

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 87.4 bits (217), Expect = 3e-19
 Identities = 36/271 (13%), Positives = 78/271 (28%), Gaps = 72/271 (26%)

Query: 146 LEGHQKVVSGIT--------LPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM 197
            +G    V            +  G+           +++++   G    +  +       
Sbjct: 14  QKGFNYTVFDCKWVPCSAKFVTMGN----FARGTGVIQLYEIQHGDLKLLREIEK----- 64

Query: 198 ISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK 255
                                       + P+      A       L  G   G +  W 
Sbjct: 65  ----------------------------AKPIKCGTFGATSLQQRYLATGDFGGNLHIW- 95

Query: 256 FNVTTNCFEPAASLKGHSLAVVSLVV--------GANKLYSGSMDNSIRVWNLETLQCIQ 307
            N+      P  S+KGH   + ++          GA ++ +GS D +++VW+        
Sbjct: 96  -NLEAP-EMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPV 153

Query: 308 TLTEHTSVVMSLLCWD-----------QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH 356
              E         CW            + + +   +  IK++   D  N+ + +  N ++
Sbjct: 154 ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLF---DLRNMALRWETNIKN 210

Query: 357 GVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
           GV +L           L+ +  +     +D+
Sbjct: 211 GVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 88.5 bits (220), Expect = 1e-19
 Identities = 39/288 (13%), Positives = 79/288 (27%), Gaps = 63/288 (21%)

Query: 134 WTVGDG---FKLLTQLEGHQKVVSGITL--PSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
           + +      ++L      H   +  I    P     + S S D+TV++W+    Q     
Sbjct: 38  FKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC-- 95

Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFA 244
                     S   W  +                  L+   G +Y++          L  
Sbjct: 96  ----------SGRRWNKLCT----------------LNDSKGSLYSVKFAPAHLGLKLAC 129

Query: 245 GTQDGAILAW---------KFNVTTNCFEPAASLKGHSLAVVSL-----VVGANKLYSGS 290
              DG +  +          + +T+     +     H  +   L          KL   +
Sbjct: 130 LGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA 189

Query: 291 MDNSIRVWNLET--LQCIQTLTEHTSVVMSL------LCWDQFLLSCSLDKTIKVWFATD 342
           ++ +I     +   L     L  H S++ S+        W Q + +   D  I+++    
Sbjct: 190 LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF--KI 247

Query: 343 SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV 390
           +  L    +              D           + N+    +L S 
Sbjct: 248 TEKLSPLASEESLTNSNMFDNSAD--VDMDAQGRSDSNTEEKAELQSN 293

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 36/240 (15%), Positives = 72/240 (30%), Gaps = 55/240 (22%)

Query: 131 LHSWTVGDGFKLLTQ-LEGHQKVVSGIT-LPSGSD--KLYSGSKDETVRVWDCASGQCAG 186
           L SWT+    K+L+     H +    ++  PS     KL   + ++ +       G+   
Sbjct: 147 LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV 206

Query: 187 VINLGGEVGCMISEGPWIFIGVTNFVK--AWNTQTNTDLSLSGPVGQVYAMAVGNDLLFA 244
              L                G  + ++  +W       +                 L+  
Sbjct: 207 AAKL---------------PGHKSLIRSISWAP----SIGRWY------------QLIAT 235

Query: 245 GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA----NKLYSGSMDNS----IR 296
           G +DG I  +   +T       + L        S +       +    G  D++      
Sbjct: 236 GCKDGRIRIF--KITE----KLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAE 289

Query: 297 VWNLETLQCIQTLTEHTSVVMSLLCW--D-QFLLSCSLDKTIKVWFATDSGNLEVTYTHN 353
           + +   ++ +    +H   V S + W      L S   D  +++W AT S   +      
Sbjct: 290 LQSNLQVELLSEHDDHNGEVWS-VSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVIT 348

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 75.0 bits (185), Expect = 3e-15
 Identities = 25/181 (13%), Positives = 58/181 (32%), Gaps = 40/181 (22%)

Query: 248 DGAILA----------WKFNVTTNCFEPAASLKGHSLAVVSLV----VGANKLYSGSMDN 293
            G  +A          +K +  T+ +E + S + H  ++V++          + S S D 
Sbjct: 22  YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK 81

Query: 294 SIRVWNLETLQ---------CIQTLTEHTSVVMSLLCW-----DQFLLSCSLDKTIKVWF 339
           ++++W  +  Q          + TL +    + S+  +        L     D  ++++ 
Sbjct: 82  TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSV-KFAPAHLGLKLACLGNDGILRLYD 140

Query: 340 ATDSGNLEVTYTHNE-----------EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388
           A +  +L      +E                 L   P       L  S  + ++ +    
Sbjct: 141 ALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK 200

Query: 389 S 389
            
Sbjct: 201 D 201

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 70.8 bits (174), Expect = 9e-14
 Identities = 37/286 (12%), Positives = 81/286 (28%), Gaps = 89/286 (31%)

Query: 146 LEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWI 204
             GH  +V  +     G   + + S D+ ++V+          ++               
Sbjct: 7   DSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWELS--------------- 50

Query: 205 FIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA----------W 254
                              S       + A+       +A  + G I+A          W
Sbjct: 51  ------------------DSWRAHDSSIVAID------WASPEYGRIIASASYDKTVKLW 86

Query: 255 KFNV-----TTNCFEPAASLKGHSLAVVSLV-----VGANKLYSGSMDNSIRVWNLETLQ 304
           + +      +   +    +L     ++ S+      +G  KL     D  +R+++     
Sbjct: 87  EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPS 145

Query: 305 CIQTLTE-------------HTSVVMSLLCWD------QFLLSCSLDKTIKVWFATDSGN 345
            +++ T              H       L W       + L   +L++ I      D G 
Sbjct: 146 DLRSWTLTSEMKVLSIPPANHLQSDFC-LSWCPSRFSPEKLAVSALEQAIIYQRGKD-GK 203

Query: 346 LEVTYT---HNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
           L V      H  +  + ++   P       L+ +   D  +R + +
Sbjct: 204 LHVAAKLPGH--KSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 247

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 24/188 (12%), Positives = 51/188 (27%), Gaps = 42/188 (22%)

Query: 134 WTVGDG-FKLLTQLEGHQKVVSGIT----LPSGSDKLYSGSKDETVRVWDCASGQCAGVI 188
               DG   +  +L GH+ ++  I+    +      + +G KD  +R++           
Sbjct: 197 QRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLS---- 252

Query: 189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
                        P            ++   + D+   G                    +
Sbjct: 253 -------------PLASEESLTNSNMFDNSADVDMDAQG--------------RSDSNTE 285

Query: 249 GAILAWKFNVTTNCFEPAASLKGHSLAV--VSLVVGANKLYSGSMDNSIRVWNLETLQCI 306
                     +    E  +    H+  V  VS  +    L S   D  +R+W        
Sbjct: 286 EKAELQ----SNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341

Query: 307 QTLTEHTS 314
           + ++  T+
Sbjct: 342 KCMSVITA 349

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Length = 351

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 13/88 (14%)

Query: 307 QTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVW-FATDSGNLEVTYT---HNEEHGVL 359
              + H  +V  +  +D   + + +CS D+ IKV+    D+ N E++ +   H  +  ++
Sbjct: 5   PFDSGHDDLVHDV-VYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAH--DSSIV 61

Query: 360 ALCGMPDSEGKPVLLCSC-NDNSVRFYD 386
           A+       G+  ++ S   D +V+ ++
Sbjct: 62  AIDWASPEYGR--IIASASYDKTVKLWE 87

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 88.2 bits (218), Expect = 3e-19
 Identities = 28/207 (13%), Positives = 53/207 (25%), Gaps = 45/207 (21%)

Query: 143 LTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEG 201
                     +  + L    S  +     D+++ V+D                       
Sbjct: 95  GLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV--------------- 139

Query: 202 PWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVT 259
                    F K                    A+++  D   +    + G + +   N  
Sbjct: 140 -LKLRKRFCFSKR-----------------PNAISIAEDDTTVIIADKFGDVYSIDINSI 181

Query: 260 TNCFEPAASLKGHSLAVVSLVV-----GANKLYSGSMDNSIRVWNLETLQCIQT-LTEHT 313
                    + GH   +  + +     G   + +   D  I++ +      +   L  H 
Sbjct: 182 PEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK 241

Query: 314 SVVMSLLCW--DQFLLSCSLDKTIKVW 338
             V S +C   D  LLS   D  I  W
Sbjct: 242 HFVSS-ICCGKDYLLLSAGGDDKIFAW 267

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 73.2 bits (179), Expect = 2e-14
 Identities = 39/253 (15%), Positives = 70/253 (27%), Gaps = 49/253 (19%)

Query: 129 KFLHSWTVGDGFKLLTQLEGHQ---KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA 185
           K L  + V    K + +L       K  + I++      +    K   V   D  S    
Sbjct: 125 KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEE 184

Query: 186 GVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----- 240
                                              T   + G V  +  + +  D     
Sbjct: 185 K---------------------------------FTQEPILGHVSMLTDVHLIKDSDGHQ 211

Query: 241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK-LYSGSMDNSIRVWN 299
            +    +D  I    +       +    L GH   V S+  G +  L S   D+ I  W+
Sbjct: 212 FIITSDRDEHIKISHYPQCFIVDKW---LFGHKHFVSSICCGKDYLLLSAGGDDKIFAWD 268

Query: 300 LETLQCIQTLTEHTSVVMSL----LCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE 355
            +T + + T   ++ +   L    L   +F    +      V     S NL       E 
Sbjct: 269 WKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA 328

Query: 356 HGVLALCGMPDSE 368
              + +  M + +
Sbjct: 329 TKCIIILEMSEKQ 341

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 65.9 bits (160), Expect = 5e-12
 Identities = 23/186 (12%), Positives = 52/186 (27%), Gaps = 12/186 (6%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
                 F +   L GH+  VS I        L S   D+ +  WD  +G+     +    
Sbjct: 225 SHYPQCFIVDKWLFGHKHFVSSICCGKDY-LLLSAGGDDKIFAWDWKTGKNLSTFDYNSL 283

Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA 253
           +   +++           +     Q   +  +   V ++        + F       I+ 
Sbjct: 284 IKPYLNDQ---------HLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIII 334

Query: 254 WKFN-VTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEH 312
            + +            +      V+SL    ++      +           + I+     
Sbjct: 335 LEMSEKQKGDLALKQIIT-FPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNE 393

Query: 313 TSVVMS 318
            S V++
Sbjct: 394 NSFVVN 399

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 63.6 bits (154), Expect = 3e-11
 Identities = 26/221 (11%), Positives = 63/221 (28%), Gaps = 35/221 (15%)

Query: 199 SEGPWIFIGVTNFVKAWNTQTNTDLSLSG-----------------PVGQVYAMAVGNDL 241
            +G  +F  + N + ++  Q+      +G                    Q  +    N+ 
Sbjct: 14  RDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENEN 73

Query: 242 LFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVW 298
               +  G  +            P          + +L +    +  +     D S+ V+
Sbjct: 74  KKLKSNKGDSIKRTAAKVP---SPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVF 130

Query: 299 NLETLQCIQTLTEHTSVV---MSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTH 352
           +++                   + +     D  ++    DK   V+    +   E  +T 
Sbjct: 131 DVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIA--DKFGDVYSIDINSIPEEKFTQ 188

Query: 353 NEEHG----VLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
               G    +  +  + DS+G   ++ S  D  ++    P 
Sbjct: 189 EPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 55.5 bits (133), Expect = 1e-08
 Identities = 29/239 (12%), Positives = 63/239 (26%), Gaps = 56/239 (23%)

Query: 127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLY--SGSKDETVRVWDCASGQ 183
               +   ++ +       + GH  +++ + L        +  +  +DE +++       
Sbjct: 172 DVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF 231

Query: 184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LL 242
                                                    L G    V ++  G D LL
Sbjct: 232 IVDKW------------------------------------LFGHKHFVSSICCGKDYLL 255

Query: 243 FAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG----ANKLYSGSMDNSIRVW 298
            +   D  I AW  +  T   +  ++   +SL    L              +      V 
Sbjct: 256 LSAGGDDKIFAW--DWKTG--KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311

Query: 299 NL---ETLQCIQTLTEHTSVVMSLLCWD----QFLLSCSLDKTIKVW-FATDSGNLEVT 349
            +   + L  +    E T  ++ L   +       L   +     V   +  +   +VT
Sbjct: 312 KIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVT 370

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 86.7 bits (215), Expect = 7e-19
 Identities = 52/273 (19%), Positives = 98/273 (35%), Gaps = 62/273 (22%)

Query: 141 KLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS 199
           +   +L GHQK   G++  P+ +  L S S D T+ +WD  +      +           
Sbjct: 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI---------- 221

Query: 200 EGPWIFIGVTNFVK--AWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFN 257
           +   IF G T  V+  AW+                        L  +   D  ++ W  +
Sbjct: 222 DAKNIFTGHTAVVEDVAWHLL-------------------HESLFGSVADDQKLMIW--D 260

Query: 258 VTT-NCFEPAASLKGHSLAVVSLV---VGANKLYSGSMDNSIRVWNLETLQC-IQTLTEH 312
               N  +P+ ++  H+  V  L         L +GS D ++ +W+L  L+  + +   H
Sbjct: 261 TRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH 320

Query: 313 TSVVMSLLCW----DQFLLSCSLDKTIKVW-----------FATDSGNLEVTYTHNEEH- 356
              +   + W    +  L S   D+ + VW              + G  E+ + H   H 
Sbjct: 321 KDEIFQ-VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHT 378

Query: 357 -GVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
             +      P+      ++CS   DN ++ + +
Sbjct: 379 AKISDFSWNPNEPW---IICSVSEDNIMQVWQM 408

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 76.3 bits (188), Expect = 2e-15
 Identities = 38/196 (19%), Positives = 71/196 (36%), Gaps = 30/196 (15%)

Query: 216 NTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAW------KFNVTTNCFEPAASL 269
             +    ++  G V +   M     ++   T    +L +           +   +P   L
Sbjct: 118 KIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL 177

Query: 270 KGHSLAVVSLV---VGANKLYSGSMDNSIRVWNLET-------LQCIQTLTEHTSVVMSL 319
           +GH      L         L S S D++I +W++         +      T HT+VV   
Sbjct: 178 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED- 236

Query: 320 LCW----DQFLLSCSLDKTIKVWFATDSGNLEVTYT---HNEEHGVLALCGMPDSEGKPV 372
           + W    +    S + D+ + +W   ++   + ++T   H  E  V  L   P SE    
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE--VNCLSFNPYSE---F 291

Query: 373 LLCSC-NDNSVRFYDL 387
           +L +   D +V  +DL
Sbjct: 292 ILATGSADKTVALWDL 307

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 74.4 bits (183), Expect = 8e-15
 Identities = 45/265 (16%), Positives = 87/265 (32%), Gaps = 52/265 (19%)

Query: 142 LLTQLEGHQKVVSGIT-LPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISE 200
            +     H+  V+    +P  +  + + +    V V+D          +           
Sbjct: 120 EIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPS----------- 168

Query: 201 GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMA---VGNDLLFAGTQDGAILAW--- 254
                            +   DL L G   + Y ++     N  L + + D  I  W   
Sbjct: 169 ----------------GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN 212

Query: 255 KFNVTTNCFEPAASLKGHSLAVVSLV---VGANKLYSGSMDNSIRVWNL---ETLQCIQT 308
                    +      GH+  V  +    +  +   S + D  + +W+     T +   T
Sbjct: 213 ATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT 272

Query: 309 LTEHTSVVMSLLCW---DQFLL-SCSLDKTIKVW-FATDSGNLEVTYTHNEEHGVLALCG 363
           +  HT+ V  L  +    +F+L + S DKT+ +W        L    +H +E  +  +  
Sbjct: 273 VDAHTAEVNCL-SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE--IFQVQW 329

Query: 364 MPDSEGKPVLLCSC-NDNSVRFYDL 387
            P +E    +L S   D  +  +DL
Sbjct: 330 SPHNET---ILASSGTDRRLHVWDL 351

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 70.2 bits (172), Expect = 2e-13
 Identities = 35/246 (14%), Positives = 72/246 (29%), Gaps = 69/246 (28%)

Query: 141 KLLTQLEGHQKVVSGIT-LPSGSDKLYSGSKDETVRVWDCASGQCAGVINL----GGEVG 195
                  GH  VV  +           S + D+ + +WD  +   +   +       EV 
Sbjct: 222 DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281

Query: 196 CMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWK 255
           C+                ++N  +                     +L  G+ D  +  W 
Sbjct: 282 CL----------------SFNPYSEF-------------------ILATGSADKTVALW- 305

Query: 256 FNVTTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCIQTLTE- 311
            ++         S + H   +  +         L S   D  + VW+L  +   Q+  + 
Sbjct: 306 -DLRNLK-LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 363

Query: 312 -------------HTSVVMSLLCW---DQFLL-SCSLDKTIKVW----FATDSGNLEVTY 350
                        HT+ +     W   + +++ S S D  ++VW       +    E+  
Sbjct: 364 EDGPPELLFIHGGHTAKISD-FSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEPEIPA 422

Query: 351 THNEEH 356
           +  E +
Sbjct: 423 SELETN 428

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 84.2 bits (209), Expect = 2e-18
 Identities = 45/286 (15%), Positives = 74/286 (25%), Gaps = 68/286 (23%)

Query: 134 WTVGDG-FKLLTQLEGHQKVVSGITL--PSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190
           + V +G   L+  L GH+  V  +    P   + L S S D  V +W   +G        
Sbjct: 40  FDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH 99

Query: 191 GG-------------EVGCMISEGPWIFIGVT----NFVKAWNTQTNTDLSLSGPVGQVY 233
            G             + G ++                 +            +        
Sbjct: 100 AGHDSSVNSVCWAPHDYGLIL---------ACGSSDGAISLLTYTGEGQWEVKKI----- 145

Query: 234 AMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK-LYSGSMD 292
                          G             + PA                  K   SG  D
Sbjct: 146 ---------NNAHTIG--------CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCD 188

Query: 293 NSIRVWNLET---LQCIQTLTEHTSVVMSLLCWD-------QFLLSCSLDKTIKVWFATD 342
           N I++W  E     +  Q L  H+  V   + W          + SCS D  + +W   D
Sbjct: 189 NLIKLWKEEEDGQWKEEQKLEAHSDWVRD-VAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247

Query: 343 SGNLEVTYTHNEEHG--VLALCGMPDSEGKPVLLCSCNDNSVRFYD 386
           + +   +     +    V  +          +L  S  DN V  + 
Sbjct: 248 ASSNTWSPKLLHKFNDVVWHVSWSIT--AN-ILAVSGGDNKVTLWK 290

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 77.3 bits (191), Expect = 4e-16
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 15/130 (11%)

Query: 269 LKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLET--LQCIQTLTEHTSVVMSLLCW- 322
              H   +    +   G  +L + S D S++++++       I  L  H   V   + W 
Sbjct: 9   DTSHEDMIHDAQMDYYG-TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQ-VAWA 66

Query: 323 ----DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE-EHGVLALCGMPDSEGKPVLLCSC 377
                  L SCS D+ + +W   ++G  E ++ H   +  V ++C  P   G  +L C  
Sbjct: 67  HPMYGNILASCSYDRKVIIW-REENGTWEKSHEHAGHDSSVNSVCWAPHDYGL-ILACGS 124

Query: 378 NDNSVRFYDL 387
           +D ++     
Sbjct: 125 SDGAISLLTY 134

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 76.1 bits (188), Expect = 1e-15
 Identities = 45/282 (15%), Positives = 84/282 (29%), Gaps = 77/282 (27%)

Query: 142 LLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISE 200
           + T    H+ ++    +   G+ +L + S D +V+++D  +G                  
Sbjct: 5   INTVDTSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGG----------------- 46

Query: 201 GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKF 256
              I I                  L G  G V+ +A  +     +L + + D  ++ W  
Sbjct: 47  --QILIA----------------DLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW-- 86

Query: 257 NVTTNCFEPAASLKGHSLAVVSLV----VGANKLYSGSMDNSIRVWNLET---LQCIQTL 309
                 +E +    GH  +V S+          L  GS D +I +         +  +  
Sbjct: 87  REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKIN 146

Query: 310 TEHTSVVMSLLCW--------------------DQFLLSCSLDKTIKVWFATDSGNLEVT 349
             HT    + + W                     +   S   D  IK+W   + G  +  
Sbjct: 147 NAHTIGCNA-VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE 205

Query: 350 YT---HNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
                H+    V  +   P        + SC  D  V  +  
Sbjct: 206 QKLEAHS--DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC 245

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Length = 316

 Score = 61.5 bits (150), Expect = 8e-11
 Identities = 27/209 (12%), Positives = 58/209 (27%), Gaps = 51/209 (24%)

Query: 131 LHSWTVGDGFKLLTQLEGHQKVVSGI-----------------TLPSGSDKLYSGSKDET 173
           L ++T    +++      H    + +                   P+   +  SG  D  
Sbjct: 131 LLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNL 190

Query: 174 VRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVK--AWNTQTNTDLSLSGPVGQ 231
           +++W                               +++V+  AW       + L      
Sbjct: 191 IKLWKEEEDGQWKEEQ--------------KLEAHSDWVRDVAWAP----SIGLPT---- 228

Query: 232 VYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV--VSLVVGANKLYSG 289
                     + + +QDG +  W  +  ++       L   +  V  VS  + AN L   
Sbjct: 229 --------STIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVS 280

Query: 290 SMDNSIRVWNLETLQCIQTLTEHTSVVMS 318
             DN + +W          +++      S
Sbjct: 281 GGDNKVTLWKESVDGQWVCISDVNKGQGS 309

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 83.4 bits (206), Expect = 5e-18
 Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 10/159 (6%)

Query: 239 NDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSI 295
             LL   + DG++  +KF++     +   SL  +   ++          ++Y G++   I
Sbjct: 23  KSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEI 81

Query: 296 RVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTH 352
              +L      Q LT + + +         D  L++ S D  I+V    + G+  +   +
Sbjct: 82  LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKN 141

Query: 353 NEEHG--VLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
              +   V       D+     L+   N++ V+++ LP 
Sbjct: 142 LNSNNTKVKNKIFTMDTNS-SRLIVGMNNSQVQWFRLPL 179

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 78.7 bits (194), Expect = 2e-16
 Identities = 33/224 (14%), Positives = 72/224 (32%), Gaps = 35/224 (15%)

Query: 129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGV 187
             +    +         L  ++  +    +   G DKL + S D  + V D  +     +
Sbjct: 79  GEILKVDLIGS-PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVI 137

Query: 188 ---------INLGGEVGCMISEGPWIFIGVTN-FVKAWNTQTNTDL-------SLSGPVG 230
                      +  ++  M +    + +G+ N  V+ +      D         L   + 
Sbjct: 138 AVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIR 197

Query: 231 QVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPA--ASLKGHSL---------AVVSL 279
            V  +    +     + DG +    F+   + +  +   + + H L          V S+
Sbjct: 198 DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI 257

Query: 280 V---VGANKLYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSL 319
                    LY+   D  I  WNL+T + I+   + +   V+ +
Sbjct: 258 EFSPRH-KFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKI 300

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 71.4 bits (175), Expect = 5e-14
 Identities = 28/263 (10%), Positives = 71/263 (26%), Gaps = 38/263 (14%)

Query: 135 TVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-GE 193
                  LL  L     ++    + +   ++Y G+    +   D         +      
Sbjct: 42  IQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEAN 101

Query: 194 VGC--MISEGPWIFIGVT----NFVKAWNTQTNTDLSLSGPVGQ---------VYAMAVG 238
           +G   +   G      +       ++  + +   D  ++              ++ M   
Sbjct: 102 LGICRICKYGDDKL--IAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN 159

Query: 239 NDLLFAGTQDGAILAWKFNVTTNCFEPA--ASLKGHSLAVVSLVVGANKLYSGSMDNSIR 296
           +  L  G  +  +  ++  +  +       + LK     V  L          S+D  + 
Sbjct: 160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVA 219

Query: 297 VWNLE------------TLQCIQTLTEHTSVVMSLLC-----WDQFLLSCSLDKTIKVWF 339
           V   +              +C +   + T++   +         +FL +   D  I  W 
Sbjct: 220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279

Query: 340 ATDSGNLEVTYTHNEEHGVLALC 362
              +      +    E  V+ + 
Sbjct: 280 L-QTRKKIKNFAKFNEDSVVKIA 301

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 70.6 bits (173), Expect = 1e-13
 Identities = 34/262 (12%), Positives = 79/262 (30%), Gaps = 40/262 (15%)

Query: 162 SDKLYSGSKDETVRVWDCA----SGQCAGVINLGGEVGCMI---SEGPWIFIG-VTNFVK 213
              L   S D ++ V+       +      +     + C     +    I++G V   + 
Sbjct: 23  KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82

Query: 214 AWNTQTNTDLSL----SGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASL 269
             +   +            +G       G+D L A + DG I         +      +L
Sbjct: 83  KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL 142

Query: 270 KGHSLAVVSLV----VGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQF 325
             ++  V + +      +++L  G  ++ ++ + L   +      E + +   +      
Sbjct: 143 NSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL 202

Query: 326 ------LLSCSLDKTIKVWFATDSGNLEV-------------TYTHNEEHGVLALCGMPD 366
                     S+D  + V F  D G+                    N  + V ++   P 
Sbjct: 203 PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR 262

Query: 367 SEGKPVLLCSC-NDNSVRFYDL 387
            +     L +  +D  +  ++L
Sbjct: 263 HK----FLYTAGSDGIISCWNL 280

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 82.5 bits (204), Expect = 2e-17
 Identities = 36/280 (12%), Positives = 75/280 (26%), Gaps = 78/280 (27%)

Query: 131 LHSWTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVIN 189
           L+     +    +       +  + + +   G   + +G  + TV++ + ++ +      
Sbjct: 167 LNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFE 224

Query: 190 LGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ 247
                                             S+      + ++       LL     
Sbjct: 225 SQH-------------------------------SMINNSNSIRSVKFSPQGSLLAIAHD 253

Query: 248 DGAILAWK------------FNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDN 293
             +                  +V T+  + +     HS  V+SL    +   L S   D 
Sbjct: 254 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 313

Query: 294 SIRVWNLETLQCIQTLTEHTSVVMSLLCW------DQFLLSCSL-DKTIKVWFATDSGNL 346
            +R W+++T + I TL  H   +               L    + D              
Sbjct: 314 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK-------- 365

Query: 347 EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386
                     G  +  G   +E    L C C D S+R++ 
Sbjct: 366 ----------GWRSGMGADLNES---LCCVCLDRSIRWFR 392

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 78.6 bits (194), Expect = 3e-16
 Identities = 18/223 (8%), Positives = 58/223 (26%), Gaps = 44/223 (19%)

Query: 142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEG 201
                + H   +  ++    +    S S D  ++VWD          +        + + 
Sbjct: 8   TANAGKAHDADIFSVS-AC-NSFTVSCSGDGYLKVWDNKLLDNENPKDKS--YSHFVHKS 63

Query: 202 PWIFIGVTNFVKAWNTQTNTDLSLS-GPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTT 260
               + V   ++    +     + S       Y +           +D            
Sbjct: 64  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRI---------TREDETKKVI--FEKL 112

Query: 261 NCFEPAASLKGHSLAVVSL-----VVGANKLYSGSMDNSIRVWNLETL------------ 303
           +     + +K HS   +        + +++L +  +  +  +W                 
Sbjct: 113 D--LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS 170

Query: 304 ------QCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVW 338
                   +++    +    S +       + +   + T+++ 
Sbjct: 171 PTLELQGTVESPMTPSQFATS-VDISERGLIATGFNNGTVQIS 212

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 75.2 bits (185), Expect = 4e-15
 Identities = 33/279 (11%), Positives = 75/279 (26%), Gaps = 49/279 (17%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
             V     +         V +               +DET +V           +     
Sbjct: 66  HHVDVLQAIERDAFELCLVATTSFSGDLL-FYRITREDETKKVIFEKLDLLDSDMK---- 120

Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA 253
                          + +   W    +  LS       V              +  ++  
Sbjct: 121 -------------KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 167

Query: 254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGAN-KLYSGSMDNSIRVWNLETLQCI------ 306
             ++ T        S    S    S+ +     + +G  + ++++  L TL+ +      
Sbjct: 168 N-WSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQ 226

Query: 307 QTLTEHTSVVMSLLCWD---QFLLSCSLDKT---IKVW-------FATDSGNLEVTYTHN 353
            ++  +++ + S + +      L       +   I ++         + S     +    
Sbjct: 227 HSMINNSNSIRS-VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL 285

Query: 354 EEHG----VLALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
            E      V++L      E     LCS   D  +RF+D+
Sbjct: 286 GEFAHSSWVMSLSFNDSGE----TLCSAGWDGKLRFWDV 320

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Length = 397

 Score = 57.1 bits (138), Expect = 4e-09
 Identities = 21/149 (14%), Positives = 37/149 (24%), Gaps = 29/149 (19%)

Query: 266 AASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCWD- 323
           A + K H   + S+    +   S S D  ++VW+ + L       + ++  V        
Sbjct: 9   ANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 68

Query: 324 -------------------------QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGV 358
                                     F      D+T KV F            H      
Sbjct: 69  DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH--SFWA 126

Query: 359 LALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
           L      D      L+ +    +   +  
Sbjct: 127 LKWGASNDRLLSHRLVATDVKGTTYIWKF 155

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 80.8 bits (200), Expect = 5e-17
 Identities = 27/207 (13%), Positives = 54/207 (26%), Gaps = 52/207 (25%)

Query: 146 LEGHQKVVSGITL----PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEG 201
           +  H  +V  I+        + ++     +  V +++ +  +   V  L           
Sbjct: 1   MAYHSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKEH-------- 51

Query: 202 PWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTN 261
                     V        T +  + P             +     D     W   +   
Sbjct: 52  -------NGQV--------TGVDWA-PDSN---------RIVTCGTDRNAYVW--TLKGR 84

Query: 262 CFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLET----LQCIQTLTEHTS 314
            ++P   +   + A   +        K   GS    I +   E       C        S
Sbjct: 85  TWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143

Query: 315 VVMSLLCW---DQFLLSCSLDKTIKVW 338
            V+S L W      L + S D   +++
Sbjct: 144 TVLS-LDWHPNSVLLAAGSCDFKCRIF 169

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 80.4 bits (199), Expect = 6e-17
 Identities = 36/278 (12%), Positives = 78/278 (28%), Gaps = 72/278 (25%)

Query: 134 WTVGDG-FKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLG 191
           +      +  + +L+ H   V+G+   P  + ++ +   D    VW              
Sbjct: 35  YEKSGNKWVQVHELKEHNGQVTGVDWAPDSN-RIVTCGTDRNAYVWTLKGRTW------- 86

Query: 192 GEVGCMISEGPWIFIGVTNFVK--AWNTQTNTDLSLSGPVGQVYAMAVGNDLLFA-GTQD 248
                   +   + + +    +   W            P  +           FA G+  
Sbjct: 87  --------KPTLVILRINRAARCVRWA-----------PNEK----------KFAVGSGS 117

Query: 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETL--- 303
             I    F    + +      K     V+SL    N   L +GS D   R+++       
Sbjct: 118 RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVE 177

Query: 304 ---------------QCIQTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVWFATDSGN 345
                          + +   +     V   +C+      +   S D T+ +  A     
Sbjct: 178 ERPAPTPWGSKMPFGELMFESSSSCGWVHG-VCFSANGSRVAWVSHDSTVCLADADKKMA 236

Query: 346 LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVR 383
           +    +      +LA+  + +S     L+ + +D    
Sbjct: 237 VATLASET--LPLLAVTFITESS----LVAAGHDCFPV 268

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 77.7 bits (192), Expect = 5e-16
 Identities = 33/325 (10%), Positives = 75/325 (23%), Gaps = 111/325 (34%)

Query: 134 WTVGDG-FKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLG 191
           WT+    +K    +    +    +   P+   K   GS    + +          V    
Sbjct: 79  WTLKGRTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKH- 136

Query: 192 GEVGCMISEGPWIFIGVTNFVKA---------------------WNTQTNTDLSLSGPVG 230
                       I   + + V +                     ++           P  
Sbjct: 137 ------------IKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP 184

Query: 231 QVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYS 288
               M  G  +                                  V  +   A  +++  
Sbjct: 185 WGSKMPFGELM-------------------------FESSSSCGWVHGVCFSANGSRVAW 219

Query: 289 GSMDNSIRVWNLETLQCIQTLTEHTSVVMS-------------------LLCWD------ 323
            S D+++ + + +    + TL   T  +++                   L  +D      
Sbjct: 220 VSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKL 279

Query: 324 ------------------QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMP 365
                                   +LDK      +  +G    +  H  ++ V  +  + 
Sbjct: 280 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS-LH--KNSVSQISVLS 336

Query: 366 DSEGKPVLLCSC-NDNSVRFYDLPS 389
             + K    C+   D  +  +D+ S
Sbjct: 337 GGKAKCSQFCTTGMDGGMSIWDVRS 361

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 72.3 bits (178), Expect = 3e-14
 Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 19/153 (12%)

Query: 245 GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLE 301
              +  +  +    + N +     LK H+  V  +       N++ +   D +  VW L+
Sbjct: 26  CPNNHEVHIY--EKSGNKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLK 82

Query: 302 T--LQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH 356
               +    +          + W   ++     S  + I + +     +  V     +  
Sbjct: 83  GRTWKPTLVILRINRAARC-VRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI 141

Query: 357 --GVLALCGMPDSEGKPVLLCS-CNDNSVRFYD 386
              VL+L   P+S    VLL +   D   R + 
Sbjct: 142 RSTVLSLDWHPNS----VLLAAGSCDFKCRIFS 170

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 72.3 bits (178), Expect = 4e-14
 Identities = 29/183 (15%), Positives = 59/183 (32%), Gaps = 20/183 (10%)

Query: 141 KLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS 199
           +L+ +       V G+    +GS ++   S D TV + D        V  L  E   +++
Sbjct: 193 ELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMA--VATLASETLPLLA 249

Query: 200 -----EGPWIFIGVTNFVKAWNTQTNT-DLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA 253
                E   +  G   F   +   +    LS  G +      +          Q+    A
Sbjct: 250 VTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA 309

Query: 254 WKFNVTTNCFEPAASLKGHSLAVVSLVV------GANKLYSGSMDNSIRVWNLETLQ-CI 306
                             H  +V  + V        ++  +  MD  + +W++ +L+  +
Sbjct: 310 SSEGSAAAGAGL---DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESAL 366

Query: 307 QTL 309
           + L
Sbjct: 367 KDL 369

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 79.4 bits (196), Expect = 2e-16
 Identities = 28/281 (9%), Positives = 71/281 (25%), Gaps = 68/281 (24%)

Query: 134 WTV-GDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLG 191
           +   G+G+K       H K+V+ +   P  + ++ + S+D    V++             
Sbjct: 38  YEQDGNGWKHARTFSDHDKIVTCVDWAPKSN-RIVTCSQDRNAYVYEKRPDG-------- 88

Query: 192 GEVGCMISEGPWIFIGVTNFVK--AWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDG 249
                   +   + + +        W+           P                G+   
Sbjct: 89  ------TWKQTLVLLRLNRAATFVRWS-----------PNED---------KFAVGSGAR 122

Query: 250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLET----- 302
            I    F    + +      +     ++SL    N   L +G  D    V +        
Sbjct: 123 VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDA 182

Query: 303 ------------LQCIQTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVWFATDSGNLE 347
                          +         V + + +      L     D ++ + + +      
Sbjct: 183 KPEASVWGSRLPFNTVCAEYPSGGWVHA-VGFSPSGNALAYAGHDSSVTIAYPSAPEQPP 241

Query: 348 VTYTHNEEHG--VLALCGMPDSEGKPVLLCSCNDNSVRFYD 386
                 +     + +L    +S     ++ +  + S     
Sbjct: 242 RALITVKLSQLPLRSLLWANESA----IVAAGYNYSPILLQ 278

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 74.8 bits (184), Expect = 5e-15
 Identities = 31/270 (11%), Positives = 57/270 (21%), Gaps = 72/270 (26%)

Query: 146 LEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWI 204
           L    K           + +  + +    V +++                          
Sbjct: 7   LHILPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHARTFSDH----------- 54

Query: 205 FIGVTNFVK--AWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNC 262
                  V    W            P             +   +QD     ++       
Sbjct: 55  ----DKIVTCVDWA-----------PKSN---------RIVTCSQDRNAYVYEKR-PDGT 89

Query: 263 FEPAASLKGHSLAVVSLV---VGANKLYSGSMDNSIRVWNLETLQ----CIQTLTEHTSV 315
           ++    L   + A   +       +K   GS    I V   E                S 
Sbjct: 90  WKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRST 148

Query: 316 VMSLLCWD---QFLLSCSLDKTIKVW---------------FATDSGNLEVTYTHNEEHG 357
           ++S L W      L +   D+   V                + +      V   +     
Sbjct: 149 ILS-LDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGW 207

Query: 358 VLALCGMPDSEGKPVLLCS-CNDNSVRFYD 386
           V A+   P        L    +D+SV    
Sbjct: 208 VHAVGFSPSGN----ALAYAGHDSSVTIAY 233

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 67.5 bits (165), Expect = 1e-12
 Identities = 30/272 (11%), Positives = 67/272 (24%), Gaps = 41/272 (15%)

Query: 134 WTVGDGFKLLTQ-LEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLG 191
           +   + + +        +  +  +   P+    L +G  D    V               
Sbjct: 129 FEQENDWWVSKHLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDA----- 182

Query: 192 GEVGCMISEGPWIFIGVTNFVKAWNTQT--NTDLSLSGPVGQVYAMAVGND--LLFAGTQ 247
                                  W ++   NT  +     G V+A+        L     
Sbjct: 183 -----------------KPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH 225

Query: 248 DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLV-VGANKLYSGSMDNSIRVWNLE--TLQ 304
           D ++     +          ++K   L + SL+    + + +   + S  +         
Sbjct: 226 DSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWA 285

Query: 305 CIQTLTEHTSVV--------MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH 356
             + L   TS                +  +   +L  T +      S     +     ++
Sbjct: 286 HTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQN 345

Query: 357 GVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL 387
            +  L     + G      S   D  V  + L
Sbjct: 346 MIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 61.7 bits (150), Expect = 9e-11
 Identities = 32/237 (13%), Positives = 63/237 (26%), Gaps = 61/237 (25%)

Query: 134 WTVGDG--FKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190
           +       +K    L    +  + +   P+  DK   GS    + V          V   
Sbjct: 82  YEKRPDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKH 140

Query: 191 GGEVGCMISEGPWIFIGVTNFVK--AWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
                        +   + + +    W+           P            LL AG  D
Sbjct: 141 -------------LKRPLRSTILSLDWH-----------PNNV---------LLAAGCAD 167

Query: 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---------------NKLYSGSMDN 293
                    V     +P AS+ G  L   ++                   N L     D+
Sbjct: 168 RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDS 227

Query: 294 SIRVWNLETLQ----CIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSG 344
           S+ +      +     + T+      + S L W  +  +++   + +  +    +SG
Sbjct: 228 SVTIAYPSAPEQPPRALITVKLSQLPLRS-LLWANESAIVAAGYNYSPILLQGNESG 283

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 23/192 (11%), Positives = 48/192 (25%), Gaps = 24/192 (12%)

Query: 132 HSWTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAG--VI 188
             W     F  +         V  +   PSG+  L     D +V +   ++ +     +I
Sbjct: 187 SVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGN-ALAYAGHDSSVTIAYPSAPEQPPRALI 245

Query: 189 NLGGE---VGCM--ISEGPWIFIGVTNFVKAWNTQTN---TDLSLSGPVGQVYAMAVGND 240
            +      +  +   +E   +  G            +       L     +      GN 
Sbjct: 246 TVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNT 305

Query: 241 LLFAGTQDGAILA-----WKFNVTTNCFEPAASLKG-HSLAVVSLVV------GANKLYS 288
                 +           ++        +  +SL   H   + +L              S
Sbjct: 306 GEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTS 365

Query: 289 GSMDNSIRVWNL 300
              D  + +W L
Sbjct: 366 SGTDGRVVLWTL 377

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 78.4 bits (192), Expect = 9e-16
 Identities = 24/239 (10%), Positives = 66/239 (27%), Gaps = 35/239 (14%)

Query: 148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIF 205
           G              + L   +    V ++     +    +     +  M  +     + 
Sbjct: 15  GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVV 74

Query: 206 IGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAV--GNDLLFAGTQDGAILAWKFN------ 257
           I   + V   +  +   L+     G++ ++      D +  G Q+G+++ +  +      
Sbjct: 75  INAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSS 134

Query: 258 -VTTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCIQTL---- 309
               N  + +         +VS+         +   S +     ++L   +  Q+     
Sbjct: 135 FKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV-LISYEYVTLTYSLVENEIKQSFIYEL 193

Query: 310 --------------TEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTH 352
                          + T  V+  L       +++   D ++  W A     +      
Sbjct: 194 PPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVF 252

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 68.0 bits (165), Expect = 2e-12
 Identities = 28/242 (11%), Positives = 72/242 (29%), Gaps = 36/242 (14%)

Query: 137 GDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC 196
               +++ +LE    +     +      L   +  +TV V    S +    + + G++  
Sbjct: 46  QQQVEVVIKLEDRSAIKEMRFVKGI--YLVVINAKDTVYVLSLYSQKVLTTVFVPGKITS 103

Query: 197 M--ISEGPWIFIGVTNF-VKAWNTQTNT------------DLSLSGPVGQVYAMAV---G 238
           +   +   W+ IG+ N  +  ++   +                 +  +  + ++      
Sbjct: 104 IDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRD 163

Query: 239 NDLLFAGTQDGAILAW--------KFNVTTNCFEPAA-----SLKGHSLAVVSLVVGAN- 284
              +    +   +            F      F P       + +  +  V+  +   N 
Sbjct: 164 IGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS 223

Query: 285 -KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKV-WFATD 342
             + +   DNS+  W+  +   I   T   + +           S +  K  KV W   +
Sbjct: 224 LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCEN 283

Query: 343 SG 344
           + 
Sbjct: 284 NP 285

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 13/121 (10%), Positives = 43/121 (35%), Gaps = 8/121 (6%)

Query: 271 GHSLAVVSLVVGANK--LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLS 328
           G S   ++      +  L   ++   + ++  + ++ +  L + +++         +L+ 
Sbjct: 15  GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVV 74

Query: 329 CSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP 388
            +   T+ V  +  S  +  T        + ++      +    +L    + S+  YD+ 
Sbjct: 75  INAKDTVYVL-SLYSQKVLTTVFV--PGKITSIDTDASLD---WMLIGLQNGSMIVYDID 128

Query: 389 S 389
            
Sbjct: 129 R 129

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 72.8 bits (178), Expect = 2e-14
 Identities = 37/282 (13%), Positives = 76/282 (26%), Gaps = 31/282 (10%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
           + V     +++Q   H   V    L   +   +     E V +WD    Q    I +   
Sbjct: 45  YNVHPVAHIMSQEMRHLSKVR--MLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAP 102

Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGT------- 246
           V  +     +I +   + +  +                         L+++         
Sbjct: 103 VKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIH 162

Query: 247 -----QDGAILAWKFNV-TTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNS-IRV 297
                  G+       V           +K H+  +  + +      + + S D + IRV
Sbjct: 163 ITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRV 222

Query: 298 WNLETLQCIQTLTEHT-SVVMSLLCWD---QFLLSCSLDKTIKVWFATDSGN-----LEV 348
           +  E    ++          +  + W      L   S   T+ V+   +  +     L+ 
Sbjct: 223 FKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKG 282

Query: 349 TYTHNEEHGVLALCGMPDSEGKPVLLCSC----NDNSVRFYD 386
                      +LC    S  K V  C        + V  + 
Sbjct: 283 WINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWP 324

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 58.9 bits (142), Expect = 7e-10
 Identities = 31/267 (11%), Positives = 76/267 (28%), Gaps = 27/267 (10%)

Query: 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC-MISEG 201
           +         V+          L   +   +  +++           +       M+   
Sbjct: 12  IVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMRHLSKVRMLHRT 70

Query: 202 PWIFI--GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNV 258
            ++    GV   V  W+     D+  +      V  + +  + +     D  I  +KF  
Sbjct: 71  NYVAFVTGVKEVVHIWDDVKKQDVSRIKVD-APVKDLFLSREFIVVSYGD-VISVFKFGN 128

Query: 259 TTNCFEPAASLKG------------HSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCI 306
                       G            +   +  + +   +    +      V     L   
Sbjct: 129 PWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKG 188

Query: 307 QTLTEHTSVVMSL-LCWD-QFLLSCSLDKT-IKVWFATDSGNLEVTYT-HNEEHGVLALC 362
             +  HT+ +  + L      + +CS D T I+V+  T+ G L   +    +   V+ + 
Sbjct: 189 VLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF-KTEDGVLVREFRRGLDRADVVDMK 247

Query: 363 GMPDSEGKPVLLCSCNDNSVRFYDLPS 389
              D      L    +  ++  +++ +
Sbjct: 248 WSTDGS---KLAVVSDKWTLHVFEIFN 271

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 26/196 (13%), Positives = 58/196 (29%), Gaps = 36/196 (18%)

Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET-VRVWDCASGQCAGVINLGGEVGCMIS 199
                ++ H   +  + L   SD + + S+D T +RV+    G        G +   ++ 
Sbjct: 186 GKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVD 245

Query: 200 -----EGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA 253
                +G  + +      +  +    + D       G                       
Sbjct: 246 MKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKG----------------------- 282

Query: 254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLE-TLQCIQ-TLTE 311
               +    F+   SL    L+V   V G  K+   S  + + VW     ++  +    +
Sbjct: 283 ---WINMKYFQSEWSLCNFKLSVDKHVRGC-KIAWISESSLVVVWPHTRMIETFKVVFDD 338

Query: 312 HTSVVMSLLCWDQFLL 327
                +  +   + L+
Sbjct: 339 EMERWLIQMDQREQLM 354

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 70.7 bits (172), Expect = 2e-13
 Identities = 21/161 (13%), Positives = 53/161 (32%), Gaps = 17/161 (10%)

Query: 241 LLFAGTQDGAILAWKFN-------VTTNCFEPAASLKGHSLAVVSL-VVGANKLYSGSMD 292
            L   +Q+G I   +         V   C +P+ +L      + +   +    +  G  +
Sbjct: 227 CLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKN 286

Query: 293 NSIRVWNLETLQC-IQTLTEHTSVVMSLLCW-----DQFLLSCSLDKTIKVWFATDSGNL 346
             +  ++L   +        H S ++S+        D  + + ++D    ++   D    
Sbjct: 287 GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT 346

Query: 347 EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
           + T +      ++ +   P        + S   +S+R    
Sbjct: 347 KTTVSRFRGSNLVPVVYCPQI---YSYIYSDGASSLRAVPS 384

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 65.7 bits (159), Expect = 7e-12
 Identities = 24/203 (11%), Positives = 54/203 (26%), Gaps = 23/203 (11%)

Query: 159 PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPW-------------IF 205
           P     L   S++ T+   +         +    E   +                   + 
Sbjct: 222 PHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVV 281

Query: 206 IGVTN-FVKAWNTQTNTDLSLSGPVGQVYAMAV-------GNDLLFAGTQDGAILAWKFN 257
            G  N FV  ++       S    V   Y ++V        + ++     DG    +   
Sbjct: 282 CGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK 341

Query: 258 VTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVM 317
                    +  +G +L  V               +S+R         +  L    + + 
Sbjct: 342 DIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTIT 401

Query: 318 SLLC--WDQFLLSCSLDKTIKVW 338
           ++        +L+ S D ++ + 
Sbjct: 402 AIGVSRLHPMVLAGSADGSLIIT 424

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 23/255 (9%), Positives = 64/255 (25%), Gaps = 39/255 (15%)

Query: 159 PSGSDKLYSGSKDETVRVWDCASGQC---------AGVINLGGEVGCMISEGPWIFI--G 207
                 +  G K+  V  +D    +          + ++++             +     
Sbjct: 274 FLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSV---STAYSDFEDTVVSTVA 330

Query: 208 VTNFVKAWNTQTNTD---LSLSGPVGQVYAMAVGNDL--LFAGTQDGAILAWKFNVTTNC 262
           V  +   +N +                +  +     +          ++ A      +  
Sbjct: 331 VDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAV----PSRA 386

Query: 263 FEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLL 320
                 L      + ++ V      + +GS D S+ + N    + +  +   ++   SL 
Sbjct: 387 AFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR-RLLHGIKNSSATQKSLR 445

Query: 321 CW--------DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPV 372
            W        D++ +  S +      +     ++           +        S G   
Sbjct: 446 LWKWDYSIKDDKYRIDSSYE-----VYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKC 500

Query: 373 LLCSCNDNSVRFYDL 387
              S +   +    L
Sbjct: 501 YAFSNSAGLLTLEYL 515

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 67.1 bits (163), Expect = 2e-12
 Identities = 37/269 (13%), Positives = 71/269 (26%), Gaps = 52/269 (19%)

Query: 131 LHSWTVGDGFKLLTQLEGHQKVVSGITL----PSGSDKLYSGSKDETVRVWDCASGQCAG 186
           LH   + D  K +T +        G           ++L        + + D  + +   
Sbjct: 60  LHFTQLKDS-KTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLR 118

Query: 187 VINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGT 246
            I +        S    I++   N V                           +      
Sbjct: 119 EIEVD-------SANEIIYMYGHNEVN-------------------------TEYFIWAD 146

Query: 247 QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV----GANKLYSGSMDNSIRVWNLET 302
             G I    +   +            S    S  V        L   S D  + V+NL +
Sbjct: 147 NRGTIGFQSYEDDSQYIV----HSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSS 201

Query: 303 LQCIQTL--TEHTSVVMSLLCW--DQFLLSCSLDKTIKVW-FATDSGNLEVTYTHNEEHG 357
                +    +  + +   + +  + + +    D+T+  +    D G L        E  
Sbjct: 202 PDQASSRFPVDEEAKIKE-VKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFK 260

Query: 358 VLALCGMPDSEGKPVLLCSCNDNSVRFYD 386
              +    D  GK ++  S   NS+  Y 
Sbjct: 261 TGTVTYDIDDSGKNMIAYSNESNSLTIYK 289

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 60.2 bits (145), Expect = 3e-10
 Identities = 30/190 (15%), Positives = 59/190 (31%), Gaps = 14/190 (7%)

Query: 207 GVTNFVKAWNTQTNTDLSLSGPVGQVYAMAV-----GNDLLFAGTQDGA-ILAWKFNVTT 260
           G  +F +  +++T T ++   P       A+      N LL     +   IL  K N   
Sbjct: 58  GALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVL 117

Query: 261 NCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLL 320
              E  ++ +   +   + V             +I   + E        +  + V  S  
Sbjct: 118 REIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSG 176

Query: 321 CWD---QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC 377
                   L   S D  + V+  +        +  +EE  +  +    +  G    +   
Sbjct: 177 VLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADN--GY--WMVVE 232

Query: 378 NDNSVRFYDL 387
            D +V  +DL
Sbjct: 233 CDQTVVCFDL 242

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 64.4 bits (156), Expect = 2e-11
 Identities = 42/272 (15%), Positives = 76/272 (27%), Gaps = 31/272 (11%)

Query: 133 SWTVGDGFKLLTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLG 191
            W        +        ++S +    SG + L +G K   V ++              
Sbjct: 11  QWCFSQVKGAVDDDVAEADIISTVEFNHSG-ELLATGDKGGRVVIFQQEQENKIQS---- 65

Query: 192 GEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFA-GTQDGA 250
                  S G +     T             L +   + ++  +   N   F   T D  
Sbjct: 66  ------HSRGEYNV-YSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKT 118

Query: 251 ILAWKFNVTTNCFEPAA-SLKGH--SLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQ 307
           I  WK  ++     P   +LK         + V          MD  +            
Sbjct: 119 IKLWK--ISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176

Query: 308 TLTEHTSVVMSLLCWDQFLLSCSLDKTIKVW---FATDSGNLEVTYTHNEE---HGVLAL 361
           T     S+ ++    D      + D  I +W       S N+      N E     + A 
Sbjct: 177 TYH-INSISIN---SDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAA 232

Query: 362 CGMPDSEGKPVLLCSCNDNSVRFYDLPSVIIC 393
              P+S      + S +  ++R  D+ +  +C
Sbjct: 233 EFHPNSCN--TFVYSSSKGTIRLCDMRASALC 262

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 57.1 bits (137), Expect = 4e-09
 Identities = 40/294 (13%), Positives = 88/294 (29%), Gaps = 48/294 (16%)

Query: 140 FKLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGVI-NLGGEVGCM 197
           F  L  LE  +K+     LP  +   +   + D+T+++W  +         NL  E G  
Sbjct: 84  FDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRY 143

Query: 198 ISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPV--GQVYAMAVGND-LLFAGTQDGAILAW 254
                   + V  F         +   +        + ++++ +D   +    D  I  W
Sbjct: 144 RDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLW 203

Query: 255 KFNVTTNCFE----PAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNL------- 300
              +T   F       A+++  +  + +        N     S   +IR+ ++       
Sbjct: 204 HLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263

Query: 301 ---------ETLQCIQTLTEHTSVVMSLLC--WDQFLLSCSLDKTIKVW----------- 338
                    E        +E  S +  +      +++++     ++KVW           
Sbjct: 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-YLSVKVWDLNMENRPVET 322

Query: 339 ---FATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
                     L   Y ++        C         V++    +N  R +D  +
Sbjct: 323 YQVHEYLRSKLCSLYENDCIFDKFECCWNGSD---SVVMTGSYNNFFRMFDRNT 373

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 24/145 (16%), Positives = 42/145 (28%), Gaps = 32/145 (22%)

Query: 244 AGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLE 301
           AG   G  + W F   +            +  + ++    +   L +G     + ++  E
Sbjct: 2   AGAGGGNDIQWCF---SQVKGAVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQE 58

Query: 302 TLQCIQTLTEHTSVVMS----------------------LLCWDQF-----LLSCSLDKT 334
               IQ+ +     V S                       + W         L  + DKT
Sbjct: 59  QENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKT 118

Query: 335 IKVWFATDSGNLEVTYTHNEEHGVL 359
           IK+W  ++       Y   EE G  
Sbjct: 119 IKLWKISERDKRPEGYNLKEEDGRY 143

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 26/190 (13%), Positives = 57/190 (30%), Gaps = 37/190 (19%)

Query: 143 LTQLEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDC-ASGQCAGVINLGGEVGCMISE 200
              +E   +V++     P+  +     S   T+R+ D  AS  C     L  E     + 
Sbjct: 219 PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNR 278

Query: 201 GPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTT 260
               F  + + +        +D+  S   G+          +       ++  W  N+  
Sbjct: 279 S--FFSEIISSI--------SDVKFS-HSGR---------YMMTRD-YLSVKVWDLNMEN 317

Query: 261 NCFEPAAS---LKGHSLAVVSLVVGA-----------NKLYSGSMDNSIRVWNLETLQCI 306
              E       L+    ++                  + + +GS +N  R+++  T + I
Sbjct: 318 RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377

Query: 307 QTLTEHTSVV 316
                  +  
Sbjct: 378 TLEASRENNK 387

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 33/192 (17%), Positives = 64/192 (33%), Gaps = 44/192 (22%)

Query: 218 QTNTDLSLSGPVG---QVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSL 274
           +   ++ + G +G      A+ V          D  I  W  N+  NC  P   L+    
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-W-LNLK-NCNSPETVLE---- 200

Query: 275 AVVSLVVGANKLYSGSMDNSIRV-WNLETLQC-IQTLTEHTSVVMSLL---------CWD 323
            +  L+   +  ++   D+S  +   + ++Q  ++ L +       LL          W+
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 324 QFLLSC-----SLDKTIKVWFATDS-----------GNLEVTYTHNEEHGVLALC-GMPD 366
            F LSC     +  K +     TD             +  +T T +E   +L        
Sbjct: 261 AFNLSCKILLTTRFKQV-----TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 367 SEGKPVLLCSCN 378
            +  P  + + N
Sbjct: 316 QD-LPREVLTTN 326

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A Length = 356

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 32/180 (17%), Positives = 61/180 (33%), Gaps = 22/180 (12%)

Query: 162 SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNT 221
            + L   +    + +W+  +GQ    +++       +    +  +G+  F+   +     
Sbjct: 193 QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLL-FIVLSHPCAKE 251

Query: 222 DLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV 281
             SL  PV Q+  +     L         ++ +              +K H  A +    
Sbjct: 252 SESLRSPVFQLIVINPKTTLSVG------VMLYCLPPGQAGRFLEGDVKDHCAAAI---- 301

Query: 282 GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVW 338
               L SG+    I +W+L   QC   L   +    S + W   D  LL+   D  I V+
Sbjct: 302 ----LTSGT----IAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY 353

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 9/28 (32%), Positives = 21/28 (75%)

Query: 109 KTDILCRNWVQGNCMYGEKCKFLHSWTV 136
           +  ++C++W++G C  G++C+FLH + +
Sbjct: 14  EKTVVCKHWLRGLCKKGDQCEFLHEYDM 41

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 34/164 (20%)

Query: 163 DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVT------------N 210
           + +Y+  +   V+  +   G+    ++L  + G    E   +  GVT             
Sbjct: 54  NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKA 113

Query: 211 FVKAWNTQTNTDL---SLSGPVGQVYAMAVGNDLLFAGTQDGAILA---------WKFNV 258
            V A NT   T      ++G    +    V + L+   T +G + A         W  N+
Sbjct: 114 QVYALNTSDGTVAWQTKVAGEA--LSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNL 171

Query: 259 TTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLET 302
                 P+ SL+G S    +          G  +  +    +E 
Sbjct: 172 DM----PSLSLRGES----APTTAFGAAVVGGDNGRVSAVLMEQ 207

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 9/25 (36%), Positives = 20/25 (80%)

Query: 112 ILCRNWVQGNCMYGEKCKFLHSWTV 136
           ++C++W++G C  G++C+FLH + +
Sbjct: 11  VVCKHWLRGLCKKGDQCEFLHEYDM 35

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 29/205 (14%), Positives = 58/205 (28%), Gaps = 40/205 (19%)

Query: 160 SGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNF-VKAWNTQ 218
           S    LY G K +   V D  +G+    ++         S    +++G T + +  ++T+
Sbjct: 90  SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFADSLSPSTS-LLYLGRTEYTITMYDTK 148

Query: 219 TNTDL---SLSGPVGQVYAM-AVGNDLLFAGTQDGAILA---------WKFNVTTNCFEP 265
           T       +       +           F    DG ++          W  N        
Sbjct: 149 TRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA------ 202

Query: 266 AASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNL----ETLQCIQTLTEHTSVVMSLLC 321
                       S VV     Y    +   +V ++    ETL+ +  ++     +     
Sbjct: 203 ------------SPVVAF---YVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKY 247

Query: 322 WDQFLLSCSLDKTIKVWFATDSGNL 346
                       T  ++    S +L
Sbjct: 248 PFPKETEAKSKLTPTLYVGKYSTSL 272

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 103 NNRAVIKTDILCRNWVQGNCMYGEKCKFLHS 133
           ++  + K   LC+ ++ G C   E C ++H 
Sbjct: 5   SSGELPKKRELCKFYITGFCARAENCPYMHG 35

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 28/177 (15%), Positives = 58/177 (32%), Gaps = 27/177 (15%)

Query: 157 TLPSGSD-----------KLY-SGSKDETVRVWDCASGQCAGVINLGGEVGCMI--SEGP 202
           T+P+GS            ++Y +     T+ V D  S   AG +  G     +    +G 
Sbjct: 69  TVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGK 128

Query: 203 WIFI--GVTNFVKAWNTQTNT---DLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFN 257
            +++       V   NT T      +S+      +     G  +  A     +I     +
Sbjct: 129 KLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSI--SVID 186

Query: 258 VTTNCFEPAASLKGHSLAV-VSLVVGANKLY---SGSMDNSIRVWNLETLQCIQTLT 310
             TN      ++K  +    +++     K Y        N++ + +  T +    + 
Sbjct: 187 TVTN--SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP 241

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	393
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.98
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.98
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.96
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.96
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.96
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.95
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.94
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
3jro_A	753	Fusion protein of protein transport protein SEC13	99.93
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.92
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.89
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.87
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.86
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.83
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.83
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.82
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.81
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.8
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.8
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.8
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.79
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.79
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.78
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.78
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.77
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.76
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.76
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.76
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.76
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.75
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.75
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.73
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.72
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.7
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.69
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.69
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.69
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.67
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.66
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.63
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.62
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.6
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.6
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.59
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.58
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.57
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.56
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.56
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.55
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.54
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.53
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.53
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.53
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.52
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.51
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.5
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.49
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.49
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.48
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.47
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.47
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.47
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.46
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.45
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.45
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.45
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.44
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.4
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.4
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.4
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.39
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.38
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.38
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.37
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.37
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.35
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.32
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.32
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.3
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.29
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.28
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.27
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.26
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.25
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.24
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.23
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.22
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.2
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.18
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.17
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.16
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.14
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.13
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.1
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.08
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.07
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.07
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.06
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.06
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.01
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.99
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.98
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.98
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.97
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.95
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.94
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.94
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.92
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.91
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.91
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.9
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.9
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.87
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.83
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.75
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.72
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.71
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.68
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.68
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.67
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.67
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.65
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.64
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.63
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.63
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.62
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.59
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.54
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.53
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.53
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.51
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.45
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.41
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.39
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.37
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.27
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.24
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.23
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.15
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.15
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.13
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.11
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.1
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.08
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.04
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.0
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.98
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.87
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.86
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.73
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.66
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.59
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.58
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.54
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.51
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.5
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.49
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.48
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.48
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.47
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.47
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.45
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.45
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.43
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.43
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.42
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.41
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.39
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.34
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.29
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.26
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.25
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.24
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.19
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.19
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.17
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.13
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.13
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.08
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	97.07
3ott_A	758	Two-component system sensor histidine kinase; beta	97.01
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.0
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.95
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.93
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.84
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.81
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.78
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.77
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.75
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.73
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.67
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.58
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.53
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.36
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.23
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.15
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.92
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	95.87
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.86
2rhk_C	72	Cleavage and polyadenylation specificity factor su	95.83
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	95.82
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.79
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.42
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.32
3ott_A	758	Two-component system sensor histidine kinase; beta	94.85
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.84
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.33
3kya_A	496	Putative phosphatase; structural genomics, joint c	94.15
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	94.12
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	93.25
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	93.23
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	93.11
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	92.89
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.72
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	92.51
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	92.46
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	92.22
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	92.01
2rhk_C	72	Cleavage and polyadenylation specificity factor su	91.39
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	91.39
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	91.23
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	90.88
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	90.86
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	90.58
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	90.15
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	89.86
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	89.69
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	89.48
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	89.42
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	89.38
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	89.08
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	88.93
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	87.83
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	86.49
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	84.8
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	80.59

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=7.3e-41  Score=316.23  Aligned_cols=274  Identities=22%  Similarity=0.363  Sum_probs=241.9

Q ss_pred             cceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224          105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      ...|..+|+|+.|+++  .+++|+.|++|+|||+.++ +.+.++.+|...|++++|+|++++|++|+.|++|++||+.++
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~-~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~  182 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF  182 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC-CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence            4467889999999986  4668999999999999998 788899999999999999999999999999999999999999


Q ss_pred             eEEEEEecCC-ceEEE--EeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEE
Q 016224          183 QCAGVINLGG-EVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK  255 (393)
Q Consensus       183 ~~~~~~~~~~-~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd  255 (393)
                      +++..+..+. .+.++  .+++.+++++ .|+.|++||+.++..+ .+.+|...|.++.++++  +|++++.|+.|++||
T Consensus       183 ~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd  262 (410)
T 1vyh_C          183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV  262 (410)
T ss_dssp             CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence            9888876553 44443  3577777765 8899999999998876 78899999999999987  999999999999999


Q ss_pred             eccCCccccCceeecCceeeEEEEEEcC----------------------CEEEEecCCCcEEEeeCCCcceeeEeccCc
Q 016224          256 FNVTTNCFEPAASLKGHSLAVVSLVVGA----------------------NKLYSGSMDNSIRVWNLETLQCIQTLTEHT  313 (393)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~----------------------~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  313 (393)
                      +.+.    +....+..|...|.+++|++                      .+|++|+.|+.|++||+++++++.++.+|.
T Consensus       263 ~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~  338 (410)
T 1vyh_C          263 VATK----ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD  338 (410)
T ss_dssp             TTTC----CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             CCCC----ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCC
Confidence            9876    55667888999999999864                      489999999999999999999999999999


Q ss_pred             cceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          314 SVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       314 ~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      ..|.++.|+  +++|++++.|+.|++||+.+.+.+..+..|..  .|.+++|+|+.+   +|++|+.||+|++|+++
T Consensus       339 ~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~---~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          339 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTAP---YVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSSSS---CEEEEETTSEEEEEC--
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcCCCC---EEEEEeCCCcEEEEeCC
Confidence            999999998  67999999999999999998888888776655  499999998776   89999999999999964

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.7e-40  Score=302.11  Aligned_cols=274  Identities=22%  Similarity=0.346  Sum_probs=240.4

Q ss_pred             ceeecceEEeeEecC------cEEEecCCCeEEEEECCCCc-EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEE
Q 016224          106 AVIKTDILCRNWVQG------NCMYGEKCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~------~~~~g~~dg~i~vwd~~~~~-~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd  178 (393)
                      ..|...|.+++|+++      .+++|+.|++|+||++.++. .....+.+|...|.+++|++++.++++++.|++|++||
T Consensus        29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd  108 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD  108 (321)
T ss_dssp             TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            458889999999863      47789999999999988762 34557899999999999999999999999999999999


Q ss_pred             CCCCeEEEEEecCCc---eEEEEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcE
Q 016224          179 CASGQCAGVINLGGE---VGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAI  251 (393)
Q Consensus       179 ~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I  251 (393)
                      +.+++.+..+.....   ...+.+++++++++ .++.|++|++++++.. .+..+...|.+++|+|+  +|++++.|+.|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i  188 (321)
T 3ow8_A          109 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII  188 (321)
T ss_dssp             TTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeE
Confidence            999999888875532   24556788888887 7889999999998876 67788899999999998  99999999999


Q ss_pred             EEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEE
Q 016224          252 LAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLL  327 (393)
Q Consensus       252 ~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~  327 (393)
                      ++||++++    +.+..+.+|...|.+++|+  +.+|++++.|+.|++||+++++++.++.+|...|.+++|+  +.+|+
T Consensus       189 ~iwd~~~~----~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~  264 (321)
T 3ow8_A          189 NIFDIATG----KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFV  264 (321)
T ss_dssp             EEEETTTT----EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EEEECCCC----cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEE
Confidence            99999876    5567788899999999986  5699999999999999999999999999999999999998  67999


Q ss_pred             EEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          328 SCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       328 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      +++.|++|+|||+.+.+.+..+..|..  .+.+++|+|++.   +|++++.||.|++||++
T Consensus       265 s~s~D~~v~iwd~~~~~~~~~~~~h~~--~v~~v~~s~~g~---~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          265 SSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGS---KIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSS---EEEEEETTCCEEEEECC
T ss_pred             EEeCCCcEEEEeCCCCEEEEEEcCCCC--cEEEEEECCCCC---EEEEEeCCCeEEEEeCC
Confidence            999999999999998888777766654  499999988765   89999999999999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.2e-38  Score=290.71  Aligned_cols=272  Identities=15%  Similarity=0.232  Sum_probs=232.7

Q ss_pred             cceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224          105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      ...|..+|.++.|+++  .+++|+.|++|++||+.++ +.+..+..|...|.+++|+|++++|++++.|+.|++|++.+.
T Consensus        51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~  129 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT-NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR  129 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC-CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTC
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC-CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccC
Confidence            3457789999999987  4668999999999999998 788899999999999999999999999999999999999875


Q ss_pred             ----eEEEEEecC-CceEEE--EeCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEE
Q 016224          183 ----QCAGVINLG-GEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAIL  252 (393)
Q Consensus       183 ----~~~~~~~~~-~~~~~~--~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~  252 (393)
                          +....+..+ ..+.++  .+++.+++++.|+.|++||+.+++.. .+.+|...|.+++|+|+  +|++++.|+.|+
T Consensus       130 ~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~  209 (340)
T 1got_B          130 EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK  209 (340)
T ss_dssp             SBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence                344444443 334333  35666666679999999999998877 77889999999999998  999999999999


Q ss_pred             EEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEecc--CccceEEEEEc--CCEE
Q 016224          253 AWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTE--HTSVVMSLLCW--DQFL  326 (393)
Q Consensus       253 vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~--~~~l  326 (393)
                      +||++..    .....+.+|...|.+++++  +++|++++.|++|++||+++++.+..+..  +...|.+++|+  +++|
T Consensus       210 ~wd~~~~----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  285 (340)
T 1got_B          210 LWDVREG----MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL  285 (340)
T ss_dssp             EEETTTC----SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred             EEECCCC----eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEE
Confidence            9999876    5567788999999999996  56999999999999999999888877753  33578999998  6799


Q ss_pred             EEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          327 LSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       327 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                      ++|+.|+.|++||+.+...+..+..|..  .|.+++|+|++.   +|++|+.|+.|+|||
T Consensus       286 ~~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~---~l~s~s~D~~i~iWd  340 (340)
T 1got_B          286 LAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGM---AVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSS---CEEEEETTSCEEEEC
T ss_pred             EEECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCC---EEEEEcCCccEEecC
Confidence            9999999999999998888777776655  499999988765   899999999999997

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.3e-37  Score=282.10  Aligned_cols=277  Identities=17%  Similarity=0.221  Sum_probs=230.2

Q ss_pred             cceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224          105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      ...|...|.+++|++++  +++|+.||.|++||+.++ +.+..+..|..+|.+++|+|++++|++|+.|++|++||+.++
T Consensus         9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~   87 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ-VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG   87 (304)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred             ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            44678899999999874  668999999999999998 888999999999999999999999999999999999999999


Q ss_pred             eEEEEEecCC-ceEEE--EeCCCEEEEE-cCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC---EEEEEeCCCcEEE
Q 016224          183 QCAGVINLGG-EVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND---LLFAGTQDGAILA  253 (393)
Q Consensus       183 ~~~~~~~~~~-~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~v  253 (393)
                      +.+..+..+. .+.++  .+++.+++++ .|+.|++||++++...  .+.+|...|.+++|+|+   +|++++.|+.|++
T Consensus        88 ~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~i  167 (304)
T 2ynn_A           88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV  167 (304)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred             cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence            9998887654 44444  3677777765 8899999999887543  67899999999999983   8999999999999


Q ss_pred             EEeccCCccccCceeecCceeeEEEEEEc----CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEE
Q 016224          254 WKFNVTTNCFEPAASLKGHSLAVVSLVVG----ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLL  327 (393)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~  327 (393)
                      ||++....   .......|...+..+.+.    +.+|++++.|++|++||+++++++.++.+|...|.++.|+  +.+|+
T Consensus       168 wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  244 (304)
T 2ynn_A          168 WSLGQSTP---NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII  244 (304)
T ss_dssp             EETTCSSC---SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred             EECCCCCc---cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEE
Confidence            99987632   222233455677777764    4589999999999999999999999999999999999998  56899


Q ss_pred             EEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          328 SCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       328 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      +++.|++|+|||+.+.+....+..+..  .+.+++++|++. ..++++|+.| .+.+|++.+
T Consensus       245 s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~asg~~~-g~~~~~~~~  302 (304)
T 2ynn_A          245 SGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGR-KNYIASGFDN-GFTVLSLGN  302 (304)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCSSS--SEEEEEECTTCG-GGCEEEEETT-EEEEEECC-
T ss_pred             EEcCCCeEEEEECCCCceeeeccCCCc--cEEEEEECCCCC-ceEEEEecCC-ceEEEEecc
Confidence            999999999999998877776655443  488898887643 2257777655 578888765

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.6e-37  Score=282.02  Aligned_cols=276  Identities=21%  Similarity=0.285  Sum_probs=230.3

Q ss_pred             ceeecceEEeeEecC---cEEEecCCCeEEEEECCCC----cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEE
Q 016224          106 AVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDG----FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~---~~~~g~~dg~i~vwd~~~~----~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd  178 (393)
                      ..|..+|.+++|+++   .+++|+.|++|++|++...    ...+..+++|...|.+++|+|++++|++++.|++|++||
T Consensus        14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd   93 (319)
T 3frx_A           14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD   93 (319)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            457889999999864   3678999999999998632    145778999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEecCC-ceEEEE--eCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--------EEEEEe
Q 016224          179 CASGQCAGVINLGG-EVGCMI--SEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--------LLFAGT  246 (393)
Q Consensus       179 ~~~~~~~~~~~~~~-~~~~~~--~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--------~l~~~~  246 (393)
                      +.+++.+..+..+. .+.++.  +++.+++++ .|+.|++||++......+.+|...|.++.+.|.        .|++++
T Consensus        94 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~  173 (319)
T 3frx_A           94 VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG  173 (319)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEE
T ss_pred             CCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEe
Confidence            99999998887554 454443  577777765 889999999987777788999999999999874        799999


Q ss_pred             CCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--
Q 016224          247 QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--  322 (393)
Q Consensus       247 ~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--  322 (393)
                      .|+.|++||++..    +....+.+|...|.+++++  +++|++++.|+.|++||+++++++.++..+ ..|.+++|+  
T Consensus       174 ~d~~i~~wd~~~~----~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~  248 (319)
T 3frx_A          174 NDKMVKAWNLNQF----QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPN  248 (319)
T ss_dssp             TTSCEEEEETTTT----EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSS
T ss_pred             CCCEEEEEECCcc----hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCC
Confidence            9999999999875    5566788899999999996  569999999999999999999999998754 579999998  


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcceEEEEee------cCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          323 DQFLLSCSLDKTIKVWFATDSGNLEVTYTH------NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       323 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      +.+|++++ +..+++|++.....+..+..+      .....+.+++|+|++.   +|++|+.||.|++||+.+.
T Consensus       249 ~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~---~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          249 RYWLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ---TLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             SSEEEEEE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSS---EEEEEETTSCEEEEEEEEC
T ss_pred             CCEEEEEc-CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCC---EEEEeecCceEEEEEEeec
Confidence            45677666 456999999765554444322      1234588999988766   9999999999999999875

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.2e-37  Score=296.53  Aligned_cols=288  Identities=22%  Similarity=0.365  Sum_probs=247.0

Q ss_pred             CcccCCCCCCCcccccceeecceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe
Q 016224           90 NNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS  169 (393)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s  169 (393)
                      .+|..+............+...|+|+.+....+++|+.||.|++||+.++ +.+..+.+|...|++++|  ++++|++|+
T Consensus       114 ~~W~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~--~~~~l~sg~  190 (435)
T 1p22_A          114 SNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL-ECKRILTGHTGSVLCLQY--DERVIITGS  190 (435)
T ss_dssp             HHTTTCCCCCCCEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSC-CEEEEECCCSSCEEEEEC--CSSEEEEEE
T ss_pred             hhhccCCccceEEecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCC-eEEEEEcCCCCcEEEEEE--CCCEEEEEc
Confidence            57888877777777777788899999998888889999999999999998 888999999999999999  788999999


Q ss_pred             CCCcEEEEECCCCeEEEEEecC-CceEEEEeCCCEEEEE-cCCeEEEEECCCCcee----eecCCCCcEEEEEEeCCEEE
Q 016224          170 KDETVRVWDCASGQCAGVINLG-GEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL----SLSGPVGQVYAMAVGNDLLF  243 (393)
Q Consensus       170 ~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~----~~~~~~~~v~~l~~~~~~l~  243 (393)
                      .||+|++||+.+++.+..+..+ ..+.++..++..++++ .|+.|++||+.++...    .+.+|...|.++.+++++|+
T Consensus       191 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~  270 (435)
T 1p22_A          191 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV  270 (435)
T ss_dssp             TTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEE
Confidence            9999999999999999888755 4566666666666665 8899999999987643    56789999999999888999


Q ss_pred             EEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcC
Q 016224          244 AGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD  323 (393)
Q Consensus       244 ~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~  323 (393)
                      +++.||.|++||+++.    +.+..+.+|...|.++.++++++++|+.|+.|++||+++++++.++.+|...|.++.+++
T Consensus       271 s~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~  346 (435)
T 1p22_A          271 SASGDRTIKVWNTSTC----EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN  346 (435)
T ss_dssp             EEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCS
T ss_pred             EEeCCCeEEEEECCcC----cEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecC
Confidence            9999999999999887    567778889999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCc---------ceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          324 QFLLSCSLDKTIKVWFATDSG---------NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       324 ~~l~s~s~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      .+|++|+.||.|++||+.+..         .+..+..|..  .+.++.|  ++   .+|++++.||.|++||+.+..
T Consensus       347 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~---~~l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          347 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF--DE---FQIVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE--CS---SCEEECCSSSEEEEEC-----
T ss_pred             CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC--CeEEEEe--CC---CEEEEEeCCCEEEEEECCCCC
Confidence            999999999999999997554         4455555544  4777777  33   379999999999999997653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-37  Score=280.81  Aligned_cols=283  Identities=22%  Similarity=0.281  Sum_probs=218.7

Q ss_pred             cceeecceEEeeEecCcEEEecCCCeEEEEECCCC-cEEEEEe-cC-CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 016224          105 RAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDG-FKLLTQL-EG-HQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~-~~~~~~l-~~-h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~  181 (393)
                      ...|..+|.++.|+++.+++|+.|++|++||+..+ .+.+..+ .+ |...|.+++|+|++++|++++.|++|+|||+..
T Consensus        10 ~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~   89 (330)
T 2hes_X           10 LKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEE   89 (330)
T ss_dssp             EECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC--
T ss_pred             eccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEccc
Confidence            34577899999999998889999999999999864 3566666 45 999999999999999999999999999999853


Q ss_pred             -------CeEEEEEecC-CceEEE--EeCCCEEEEE-cCCeEEEEECCCC----cee-eecCCCCcEEEEEEeCC--EEE
Q 016224          182 -------GQCAGVINLG-GEVGCM--ISEGPWIFIG-VTNFVKAWNTQTN----TDL-SLSGPVGQVYAMAVGND--LLF  243 (393)
Q Consensus       182 -------~~~~~~~~~~-~~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~----~~~-~~~~~~~~v~~l~~~~~--~l~  243 (393)
                             .+.+..+..+ ..+.++  .+++++|+++ .|+.|++||+...    +.+ .+.+|...|.+++|+|+  +|+
T Consensus        90 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~  169 (330)
T 2hes_X           90 SADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLA  169 (330)
T ss_dssp             -----CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEE
T ss_pred             CcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEE
Confidence                   3455555543 344443  3578888875 7899999999532    222 67889999999999987  999


Q ss_pred             EEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC----EEEEecCCCcEEEeeCCCc--------ceeeEecc
Q 016224          244 AGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN----KLYSGSMDNSIRVWNLETL--------QCIQTLTE  311 (393)
Q Consensus       244 ~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~l~sg~~dg~i~iwd~~~~--------~~~~~~~~  311 (393)
                      +++.|++|++||.....  .+++..+.+|...|.+++|+++    +|++++.|++|++||++++        .+...+..
T Consensus       170 s~s~D~~i~iW~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~  247 (330)
T 2hes_X          170 SSSYDDTVRIWKDYDDD--WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD  247 (330)
T ss_dssp             EEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS
T ss_pred             EEcCCCeEEEEECCCCC--eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc
Confidence            99999999999987642  1456778899999999999753    7999999999999999765        44555655


Q ss_pred             -CccceEEEEEc-CCEEEEEeCCCcEEEEEcCCCcc-eEEEEeecCCc-cEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          312 -HTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGN-LEVTYTHNEEH-GVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       312 -~~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~-~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                       |...|.+++|+ +.+|++++.|+.|+|||..+++. ........+.. .+.+++|+|.. ++++|++++.||+|+||++
T Consensus       248 ~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~-~~~~las~s~Dg~v~~W~~  326 (330)
T 2hes_X          248 VHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELN-GKTILATGGDDGIVNFWSL  326 (330)
T ss_dssp             CCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC------CCEEEEETTSEEEEEEC
T ss_pred             ccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCC-CceEEEEecCCCcEEEEEe
Confidence             89999999998 56899999999999999876532 11111122333 68999998842 2238999999999999998


Q ss_pred             Cce
Q 016224          388 PSV  390 (393)
Q Consensus       388 ~s~  390 (393)
                      ++.
T Consensus       327 ~~~  329 (330)
T 2hes_X          327 EKA  329 (330)
T ss_dssp             ---
T ss_pred             ccC
Confidence            753

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.4e-37  Score=284.01  Aligned_cols=240  Identities=19%  Similarity=0.246  Sum_probs=196.7

Q ss_pred             ceeecceEEeeEecCc-EEEecCCCeEEEEECCCCcE---EEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 016224          106 AVIKTDILCRNWVQGN-CMYGEKCKFLHSWTVGDGFK---LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~~-~~~g~~dg~i~vwd~~~~~~---~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~  181 (393)
                      .+++..|.+++|++++ +++|+.||+|+|||+.++..   ....+.+|...|++|+|+|++++|++|+.|++|++||+++
T Consensus        79 ~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           79 VQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             EEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             eccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            3456789999999874 66899999999999987721   2234568999999999999999999999999999999999


Q ss_pred             CeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEecc
Q 016224          182 GQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNV  258 (393)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~  258 (393)
                      ++++..+                                     .+|...|.+++|+++   +|++++.|++|++||+++
T Consensus       159 ~~~~~~~-------------------------------------~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~  201 (344)
T 4gqb_B          159 QVVLSSY-------------------------------------RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC  201 (344)
T ss_dssp             TEEEEEE-------------------------------------CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS
T ss_pred             CcEEEEE-------------------------------------cCcCCceEEEEecCCCCCceeeeccccccccccccc
Confidence            8876544                                     578899999999876   789999999999999988


Q ss_pred             CCccccCceee--cCceeeEEEEEEc---CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--C-CEEEEEe
Q 016224          259 TTNCFEPAASL--KGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--D-QFLLSCS  330 (393)
Q Consensus       259 ~~~~~~~~~~~--~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~-~~l~s~s  330 (393)
                      ..    ....+  ..+...+.+++++   +++|++|+.|++|++||+++++++.++.+|...|++++|+  + .+|++|+
T Consensus       202 ~~----~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs  277 (344)
T 4gqb_B          202 PK----PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS  277 (344)
T ss_dssp             SS----CEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE
T ss_pred             cc----eeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe
Confidence            74    33333  3455668888886   3589999999999999999999999999999999999998  3 4799999


Q ss_pred             CCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          331 LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       331 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      .|++|+|||+.+++. ..+..|.  ..|.+++|+|++.  .+|++++.|++|++|++++..
T Consensus       278 ~D~~i~vwd~~~~~~-~~~~~H~--~~V~~v~~sp~~~--~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          278 EDCSLAVLDSSLSEL-FRSQAHR--DFVRDATWSPLNH--SLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             TTSCEEEECTTCCEE-EEECCCS--SCEEEEEECSSST--TEEEEEETTSCEEEEECCC--
T ss_pred             CCCeEEEEECCCCcE-EEEcCCC--CCEEEEEEeCCCC--eEEEEEcCCCeEEEEECCCCC
Confidence            999999999987653 3444444  4599999998754  378899999999999998764

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.6e-36  Score=279.46  Aligned_cols=272  Identities=15%  Similarity=0.209  Sum_probs=228.5

Q ss_pred             cceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224          105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      ...|..+|+|++|+++  .+++|+.|++|++||..++ +....+..|...|.+++|+|++.+|++++.|+.+++|++...
T Consensus        60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~-~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~  138 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT-NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFD  138 (354)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCC
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC-CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecc
Confidence            4468889999999987  4678999999999999988 777888899999999999999999999999999999998643


Q ss_pred             ------eEEEEEe-cCCceEEE--EeCCCEEEE-EcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC----EEEEEeC
Q 016224          183 ------QCAGVIN-LGGEVGCM--ISEGPWIFI-GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND----LLFAGTQ  247 (393)
Q Consensus       183 ------~~~~~~~-~~~~~~~~--~~~~~~l~~-~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~----~l~~~~~  247 (393)
                            .....+. +...+..+  .+++..+++ +.|+.|++||+++++.+ .+.+|...|.++.++++    +|++++.
T Consensus       139 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~  218 (354)
T 2pbi_B          139 KNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC  218 (354)
T ss_dssp             TTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEET
T ss_pred             ccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeC
Confidence                  1223333 33334333  346666655 58999999999999877 78899999999999763    8999999


Q ss_pred             CCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccC--ccceEEEEEc-
Q 016224          248 DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEH--TSVVMSLLCW-  322 (393)
Q Consensus       248 dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~l~~~-  322 (393)
                      ||.|++||++++    +....+..|...|.+++++  +++|++++.|++|++||+++.+.+..+..+  ...+.++.|+ 
T Consensus       219 Dg~v~~wd~~~~----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~  294 (354)
T 2pbi_B          219 DKKAMVWDMRSG----QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL  294 (354)
T ss_dssp             TSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred             CCeEEEEECCCC----cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeC
Confidence            999999999887    5567788899999999996  569999999999999999998887777643  3467889988 


Q ss_pred             -CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          323 -DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       323 -~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                       +.+|++++.|+.|++||+.++..+..+..|..  .+.+++|+|++.   +|++|+.|++|++|+
T Consensus       295 ~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~---~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          295 SGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGT---AFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSS---CEEEEETTSEEEEEC
T ss_pred             CCCEEEEEECCCcEEEEECCCCceEEEEECCCC--cEEEEEECCCCC---EEEEEcCCCCEEecC
Confidence             78999999999999999988887777766654  599999988766   899999999999996

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.5e-36  Score=274.39  Aligned_cols=273  Identities=20%  Similarity=0.385  Sum_probs=229.6

Q ss_pred             ceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 016224          106 AVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ  183 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~  183 (393)
                      ..|..+|.+++|++++  +++|+.|+.|++|++.++ +....+.+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus        20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~   98 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK   98 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc-ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc
Confidence            4577899999999874  668999999999999988 7888999999999999999999999999999999999999999


Q ss_pred             EEEEEecCCc-eEEE--EeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEe
Q 016224          184 CAGVINLGGE-VGCM--ISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF  256 (393)
Q Consensus       184 ~~~~~~~~~~-~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~  256 (393)
                      ++..+..+.. +.++  .+++.+++++ .|+.|++||+++++.+ .+..|...|.++.|+++  +|++++.|+.|++||+
T Consensus        99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~  178 (312)
T 4ery_A           99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  178 (312)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence            9988876543 4333  3577777765 7899999999998876 77889999999999987  9999999999999999


Q ss_pred             ccCCccccCcee-ecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEE--EEc---CCEEEE
Q 016224          257 NVTTNCFEPAAS-LKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSL--LCW---DQFLLS  328 (393)
Q Consensus       257 ~~~~~~~~~~~~-~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l--~~~---~~~l~s  328 (393)
                      +...    .... ...+...+..++++  +++|++++.|+.|++||+++++++..+.+|......+  .+.   +.+|++
T Consensus       179 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  254 (312)
T 4ery_A          179 ASGQ----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS  254 (312)
T ss_dssp             TTCC----EEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE
T ss_pred             CCCc----eeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE
Confidence            8763    2333 33456678888876  5699999999999999999999999998887654322  222   679999


Q ss_pred             EeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe--CCCeEEEEeCC
Q 016224          329 CSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC--NDNSVRFYDLP  388 (393)
Q Consensus       329 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s--~dg~I~iwd~~  388 (393)
                      ++.|+.|++||+.+.+.+..+..|..  .+..++|+|+..   +|++++  .|++|++|+..
T Consensus       255 g~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~---~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          255 GSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTEN---IIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSS---EEEEEECTTTCCEEEEECC
T ss_pred             ECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCC---ceEEEEccCCccEEEecCC
Confidence            99999999999998887777766654  589999988766   899887  69999999975

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.9e-36  Score=274.43  Aligned_cols=244  Identities=17%  Similarity=0.314  Sum_probs=211.0

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc-eE--EEEeCCCEEEEE-cCCeEEEEE
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-VG--CMISEGPWIFIG-VTNFVKAWN  216 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~~-~~~~i~v~d  216 (393)
                      +..+++.+|.+.|++++|+|++++|++++.||+|++||+.+++.+..+..+.. +.  .+.+++++++++ .|+.|++||
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence            45678999999999999999999999999999999999999999988876543 33  345688888776 788999999


Q ss_pred             CCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC---CEEEEec
Q 016224          217 TQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGS  290 (393)
Q Consensus       217 ~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sg~  290 (393)
                      +.+++.+ .+.+|...|.+++|+|+  +|++++.|++|++||++...   .....+.+|...|.+++|++   .+|++|+
T Consensus        84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~---~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs  160 (304)
T 2ynn_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW---ALEQTFEGHEHFVMCVAFNPKDPSTFASGC  160 (304)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT---EEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred             CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc---chhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence            9998877 78899999999999998  99999999999999998763   34566788999999999974   5899999


Q ss_pred             CCCcEEEeeCCCcceeeEec-cCccceEEEEEc----CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeee
Q 016224          291 MDNSIRVWNLETLQCIQTLT-EHTSVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMP  365 (393)
Q Consensus       291 ~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~  365 (393)
                      .|++|++||+++.+....+. .|...+..+.+.    +.+|++++.|++|++||+++++.+..+..|...  +..++|+|
T Consensus       161 ~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~--v~~~~~~p  238 (304)
T 2ynn_A          161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN--VSFAVFHP  238 (304)
T ss_dssp             TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSC--EEEEEECS
T ss_pred             CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCC--EEEEEECC
Confidence            99999999999887766665 456788888886    469999999999999999988888877776554  88999988


Q ss_pred             CCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          366 DSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       366 ~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      +.+   +|++++.||+|++||+.++++
T Consensus       239 ~~~---~l~s~s~Dg~i~iWd~~~~~~  262 (304)
T 2ynn_A          239 TLP---IIISGSEDGTLKIWNSSTYKV  262 (304)
T ss_dssp             SSS---EEEEEETTSCEEEEETTTCCE
T ss_pred             CCC---EEEEEcCCCeEEEEECCCCce
Confidence            766   999999999999999998764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=7.6e-36  Score=286.05  Aligned_cols=289  Identities=26%  Similarity=0.396  Sum_probs=239.4

Q ss_pred             cccCCCCCCCcccccceeecceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC
Q 016224           91 NYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK  170 (393)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~  170 (393)
                      +|..+...+.......+....+.|+.+.++.+++|+.||.|++||+.++ +.+..+.+|...|++++|++++ +|++|+.
T Consensus       104 ~w~~~~~~~~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~-~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~  181 (464)
T 3v7d_B          104 NWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINK-KFLLQLSGHDGGVWALKYAHGG-ILVSGST  181 (464)
T ss_dssp             HHHCTTCCCEEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECSTT-EEEEEET
T ss_pred             hhcCCCcCcceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCC-cEEEEEeCCCcCEEEEEEcCCC-EEEEEeC
Confidence            4554443333333333333346899998888899999999999999998 8999999999999999999988 9999999


Q ss_pred             CCcEEEEECCCCeEEEEEecC-CceEEEE----eCCCEEEEE-cCCeEEEEECCCCce----------------------
Q 016224          171 DETVRVWDCASGQCAGVINLG-GEVGCMI----SEGPWIFIG-VTNFVKAWNTQTNTD----------------------  222 (393)
Q Consensus       171 dg~v~iwd~~~~~~~~~~~~~-~~~~~~~----~~~~~l~~~-~~~~i~v~d~~~~~~----------------------  222 (393)
                      ||+|++||+++++.+..+..+ ..+.++.    +++.+++++ .|+.|++||+.+...                      
T Consensus       182 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (464)
T 3v7d_B          182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY  261 (464)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTT
T ss_pred             CCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeE
Confidence            999999999999999988754 4454443    255666655 889999999988752                      


Q ss_pred             --eeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEe
Q 016224          223 --LSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVW  298 (393)
Q Consensus       223 --~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iw  298 (393)
                        ..+.+|...|.++..+++++++++.|+.|++||+++.    +.+..+.+|...|.+++++  +++|++++.|+.|++|
T Consensus       262 ~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vw  337 (464)
T 3v7d_B          262 FVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM----KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW  337 (464)
T ss_dssp             EEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             EEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCC----cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence              2567889999999988889999999999999999876    5667788899999999986  5699999999999999


Q ss_pred             eCCCcceeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeC
Q 016224          299 NLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN  378 (393)
Q Consensus       299 d~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~  378 (393)
                      |+++++++.++.+|...|.++.+++++|++++.||.|++||+.+........ +  ...+..+++.+++.   +|++++ 
T Consensus       338 d~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~--~~~~~~~~~~~~~~---~l~~~~-  410 (464)
T 3v7d_B          338 DLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH-H--TNLSAITTFYVSDN---ILVSGS-  410 (464)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE-C--TTCCCEEEEEECSS---EEEEEE-
T ss_pred             ECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeec-C--CCCccEEEEEeCCC---EEEEec-
Confidence            9999999999999999999999999999999999999999998766543332 2  23455677777665   888888 


Q ss_pred             CCeEEEEeCCceee
Q 016224          379 DNSVRFYDLPSVII  392 (393)
Q Consensus       379 dg~I~iwd~~s~~l  392 (393)
                      ||.|++||++++++
T Consensus       411 dg~i~iwd~~~g~~  424 (464)
T 3v7d_B          411 ENQFNIYNLRSGKL  424 (464)
T ss_dssp             TTEEEEEETTTCCE
T ss_pred             CCeEEEEECCCCcE
Confidence            89999999999875

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.3e-36  Score=282.02  Aligned_cols=281  Identities=21%  Similarity=0.337  Sum_probs=225.8

Q ss_pred             eeecceEEeeEecCc-EEEecCCCeEEEEECCCCcEEEEEecCCcC------------------CEEEEEecCCCCEEEE
Q 016224          107 VIKTDILCRNWVQGN-CMYGEKCKFLHSWTVGDGFKLLTQLEGHQK------------------VVSGITLPSGSDKLYS  167 (393)
Q Consensus       107 ~~~~~i~c~~~~~~~-~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~------------------~I~~i~~s~~~~~l~s  167 (393)
                      .|...|.|++|++++ .++.+.++.+++|++.++ +.+..+..|..                  .|++++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDG-SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTC-CEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCC-CEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            478899999999874 444445889999999998 77777766542                  4999999999999999


Q ss_pred             EeCCCcEEEEECCCCeEEEEEecCC-ceEEE--EeCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeC-C--
Q 016224          168 GSKDETVRVWDCASGQCAGVINLGG-EVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN-D--  240 (393)
Q Consensus       168 ~s~dg~v~iwd~~~~~~~~~~~~~~-~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~-~--  240 (393)
                      |+.|++|+|||+.+++.+..+..+. .+.++  .+++.+++++ .|+.|++||+++++......+...+.++++++ +  
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  220 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK  220 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCC
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCC
Confidence            9999999999999999988887554 44444  3577777765 88999999999998775556778899999988 4  


Q ss_pred             EEEEEeCCCcEEEEEeccCCccccC---ceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCC------------c
Q 016224          241 LLFAGTQDGAILAWKFNVTTNCFEP---AASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET------------L  303 (393)
Q Consensus       241 ~l~~~~~dg~I~vwd~~~~~~~~~~---~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~------------~  303 (393)
                      +|++++.|+.|++||++++......   .....+|...|.+++|+  +.+|++++.|+.|++||+++            +
T Consensus       221 ~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~  300 (393)
T 1erj_A          221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG  300 (393)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCC
Confidence            9999999999999999876321110   11125788999999996  56999999999999999975            3


Q ss_pred             ceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeC---CCCCcEEEEEeC
Q 016224          304 QCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD---SEGKPVLLCSCN  378 (393)
Q Consensus       304 ~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~l~s~s~  378 (393)
                      .+..++.+|...|.+++++  +.+|++++.|+.|++||+.+++.+..+..|..  .+.+++|++.   .+++.+|++|+.
T Consensus       301 ~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--~v~~v~~~~~~~~~p~~~~l~sgs~  378 (393)
T 1erj_A          301 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISVAVANGSSLGPEYNVFATGSG  378 (393)
T ss_dssp             CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECSSCTTCTTCEEEEEEET
T ss_pred             cceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--CEEEEEecCCcCcCCCCCEEEEECC
Confidence            4566788999999999998  67999999999999999998888777776654  4889998874   234569999999


Q ss_pred             CCeEEEEeCCce
Q 016224          379 DNSVRFYDLPSV  390 (393)
Q Consensus       379 dg~I~iwd~~s~  390 (393)
                      ||+|+||++...
T Consensus       379 Dg~i~iW~~~~~  390 (393)
T 1erj_A          379 DCKARIWKYKKI  390 (393)
T ss_dssp             TSEEEEEEEEEC
T ss_pred             CCcEEECccccc
Confidence            999999998754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=9.3e-36  Score=282.16  Aligned_cols=289  Identities=20%  Similarity=0.310  Sum_probs=237.4

Q ss_pred             CCCCCCcccccceee--cceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEe--cCCcCCEEEEEecCCCCEEEEEeC
Q 016224           95 GNSKNSNINNRAVIK--TDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQL--EGHQKVVSGITLPSGSDKLYSGSK  170 (393)
Q Consensus        95 ~~~~~~~~~~~~~~~--~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l--~~h~~~I~~i~~s~~~~~l~s~s~  170 (393)
                      .+..|.+........  -...++.|+.+++++.+.|++|+|||+.++ +.+..+  .+|...|++|+|+|++++|++|+.
T Consensus        89 i~~~p~~~l~ap~~~~d~y~~~l~wS~~n~lAvgld~tV~lWd~~tg-~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~  167 (420)
T 4gga_A           89 IPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIKEGNYLAVGTS  167 (420)
T ss_dssp             CCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECTTSSEEEEEET
T ss_pred             cCCCCceEEECCCCcccccceeEEECCCCEEEEEeCCEEEEEECCCC-CEEEEEEecCCCCcEEEEEECCCCCEEEEEEC
Confidence            344444444333222  256789999998888778999999999998 666554  567889999999999999999999


Q ss_pred             CCcEEEEECCCCeEEEEEecC-CceEEEEeCCCEEEEE-cCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC--EEEE
Q 016224          171 DETVRVWDCASGQCAGVINLG-GEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFA  244 (393)
Q Consensus       171 dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~--~l~~  244 (393)
                      ||+|+|||+++++.+..+..+ ..+.++..++.+++++ .++.+++||.......  .+.+|...+..+.++++  ++++
T Consensus       168 Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s  247 (420)
T 4gga_A          168 SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLAS  247 (420)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             CCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeee
Confidence            999999999999999988765 4566677788888876 7889999999876544  77899999999999987  9999


Q ss_pred             EeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC---CEEEE--ecCCCcEEEeeCCCcceeeEeccCccceEEE
Q 016224          245 GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYS--GSMDNSIRVWNLETLQCIQTLTEHTSVVMSL  319 (393)
Q Consensus       245 ~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~s--g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l  319 (393)
                      ++.|+.|++|+................|...|.++++.+   +.+++  |+.|++|++||+++++++..+..|. .+.++
T Consensus       248 ~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~-~v~~~  326 (420)
T 4gga_A          248 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSI  326 (420)
T ss_dssp             EETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS-CEEEE
T ss_pred             eeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc-ceeee
Confidence            999999999999887655556677888999999999963   45554  5689999999999999999888664 56777


Q ss_pred             EEc--CCEEEEEe--CCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          320 LCW--DQFLLSCS--LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       320 ~~~--~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      .|.  ++.+++++  .|+.|+|||+.+++.+..+.+|..  .|.+++|+|++.   +|+||+.|++|+|||+.+.
T Consensus       327 ~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~--~V~~l~~spdg~---~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          327 LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGA---TVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             EEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSS---CEEEEETTTEEEEECCSCS
T ss_pred             eecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCC---EEEEEecCCeEEEEECCCC
Confidence            776  56666654  799999999999988888877655  599999998766   8999999999999998653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.8e-36  Score=274.40  Aligned_cols=277  Identities=18%  Similarity=0.215  Sum_probs=228.8

Q ss_pred             eeecceEEeeEecC---cEEEecCCCeEEEEECCCC----cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 016224          107 VIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDG----FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC  179 (393)
Q Consensus       107 ~~~~~i~c~~~~~~---~~~~g~~dg~i~vwd~~~~----~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~  179 (393)
                      .|...|+|++|+++   .+++|+.|++|+|||+.+.    ..+...+.+|...|.+++|+|++++|++++.|+.|++|+.
T Consensus        36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~  115 (340)
T 4aow_A           36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL  115 (340)
T ss_dssp             CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEee
Confidence            48889999999965   2568999999999998754    2467789999999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCceEE---EEeCCCEEEE-EcCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC----EEEEEeCCC
Q 016224          180 ASGQCAGVINLGGEVGC---MISEGPWIFI-GVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND----LLFAGTQDG  249 (393)
Q Consensus       180 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~-~~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~----~l~~~~~dg  249 (393)
                      .................   ..+.+.++++ +.|+.+++||.......  ....|...+..++|+++    ++++++.|+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~  195 (340)
T 4aow_A          116 TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK  195 (340)
T ss_dssp             TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTS
T ss_pred             cccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCC
Confidence            99888777765543322   2245566655 58899999999877655  55678999999999765    789999999


Q ss_pred             cEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc-CCEE
Q 016224          250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFL  326 (393)
Q Consensus       250 ~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l  326 (393)
                      .|++||++..    +....+.+|...|.+++++  +++|++++.|+.|++||+++.+++..+..+ ..+.++.++ +.++
T Consensus       196 ~i~i~d~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~  270 (340)
T 4aow_A          196 LVKVWNLANC----KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYW  270 (340)
T ss_dssp             CEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSE
T ss_pred             EEEEEECCCC----ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCce
Confidence            9999999886    5567788899999999986  569999999999999999999999888754 578999998 4578


Q ss_pred             EEEeCCCcEEEEEcCCCcceEEEEe-------ecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          327 LSCSLDKTIKVWFATDSGNLEVTYT-------HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       327 ~s~s~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      ++++.|+.|++||++....+..+..       ..+...|.+++|+|++.   +|++|+.||.|+|||+.+|+
T Consensus       271 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~---~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          271 LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ---TLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS---EEEEEETTSCEEEEEEEC--
T ss_pred             eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC---EEEEEeCCCEEEEEeCCCcC
Confidence            8888999999999987655444332       23445699999988766   99999999999999999985

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2e-37  Score=289.78  Aligned_cols=280  Identities=15%  Similarity=0.232  Sum_probs=227.5

Q ss_pred             cceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224          105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      ...|..+|+|++|+++  .+++|+.|++|+|||+.++ +.+..+..|...|.+++|+|++++|++|+.|+.|++||+.+.
T Consensus        62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~-~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~  140 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS-QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQ  140 (380)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT-EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCC
T ss_pred             ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCC
Confidence            3457889999999987  4778999999999999998 888999999999999999999999999999999999998753


Q ss_pred             e-------EEEEEecC-CceEE--EEeC-CC-EEEEEcCCeEEEEECCCCceee-e-----cCCCCcEEEEEEeC---CE
Q 016224          183 Q-------CAGVINLG-GEVGC--MISE-GP-WIFIGVTNFVKAWNTQTNTDLS-L-----SGPVGQVYAMAVGN---DL  241 (393)
Q Consensus       183 ~-------~~~~~~~~-~~~~~--~~~~-~~-~l~~~~~~~i~v~d~~~~~~~~-~-----~~~~~~v~~l~~~~---~~  241 (393)
                      .       ....+..+ ..+..  +.++ +. ++.++.|+.|++||+.+++.+. +     .+|...|.++.+++   ++
T Consensus       141 ~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  220 (380)
T 3iz6_a          141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM  220 (380)
T ss_dssp             SSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCE
T ss_pred             ccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCE
Confidence            2       11222222 22222  2232 33 4445589999999999988763 3     57889999999965   39


Q ss_pred             EEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCcc-----
Q 016224          242 LFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTS-----  314 (393)
Q Consensus       242 l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-----  314 (393)
                      |++|+.|+.|++||++...   .....+.+|...|.+++|+  +++|++++.|++|++||+++++++..+..+..     
T Consensus       221 l~sgs~D~~v~~wd~~~~~---~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~  297 (380)
T 3iz6_a          221 FISGSCDTTVRLWDLRITS---RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNE  297 (380)
T ss_dssp             EEEEETTSCEEEEETTTTC---CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCS
T ss_pred             EEEEECCCeEEEEECCCCC---cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccc
Confidence            9999999999999998543   5567788999999999996  56999999999999999999999888865432     


Q ss_pred             --ceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEe--ecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          315 --VVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYT--HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       315 --~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                        .|.+++|+  +++|++|+.||.|++||+...+.+..+..  ..+...|.+++|+|++.   +|++|+.|++|++|++.
T Consensus       298 ~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~---~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          298 LPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGS---ALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             SCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSS---EEEEECTTSCEEEEECC
T ss_pred             cCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCC---EEEEeeCCCCEEEEecC
Confidence              47889997  78999999999999999988776655522  22345688999988766   99999999999999998


Q ss_pred             cee
Q 016224          389 SVI  391 (393)
Q Consensus       389 s~~  391 (393)
                      ..+
T Consensus       375 ~~~  377 (380)
T 3iz6_a          375 GHR  377 (380)
T ss_dssp             SSS
T ss_pred             CCc
Confidence            753

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.5e-37  Score=283.81  Aligned_cols=277  Identities=18%  Similarity=0.197  Sum_probs=213.5

Q ss_pred             ceeecceEEeeEecCc--EEEecC------CCeEEEEECCCCc---EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcE
Q 016224          106 AVIKTDILCRNWVQGN--CMYGEK------CKFLHSWTVGDGF---KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETV  174 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~~--~~~g~~------dg~i~vwd~~~~~---~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v  174 (393)
                      ..|+..|.|++|++++  +++|+.      |+.|++|+..++.   .......+|...|++++|+|++. +++++.||+|
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v  117 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV  117 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence            4577899999999985  445665      7889999987652   12334456999999999999975 5678889999


Q ss_pred             EEEECCCCeEEEEE-----ecCCceEEE--EeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC---EE
Q 016224          175 RVWDCASGQCAGVI-----NLGGEVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LL  242 (393)
Q Consensus       175 ~iwd~~~~~~~~~~-----~~~~~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~---~l  242 (393)
                      +|||+.+++.....     .+...+.++  .+++++|+++ .|+.|++||+.+++.+ .+..|...|.+++|+++   ++
T Consensus       118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~  197 (357)
T 4g56_B          118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF  197 (357)
T ss_dssp             EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCE
T ss_pred             EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCcee
Confidence            99999988654322     233455544  4688888875 8899999999999877 77889999999999876   79


Q ss_pred             EEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEE
Q 016224          243 FAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSL  319 (393)
Q Consensus       243 ~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l  319 (393)
                      ++++.|+.|++||++++..  ........|...+.+++|+   +.+|++|+.|+.|++||+++++++.++.+|...|+++
T Consensus       198 ~s~~~dg~v~~wd~~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l  275 (357)
T 4g56_B          198 LSCGEDGRILLWDTRKPKP--ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL  275 (357)
T ss_dssp             EEEETTSCEEECCTTSSSC--BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE
T ss_pred             eeeccCCceEEEECCCCce--eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEE
Confidence            9999999999999988643  2223345577789999986   3589999999999999999999999999999999999


Q ss_pred             EEc--C-CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          320 LCW--D-QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       320 ~~~--~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      +|+  + ++|++++.|++|+|||+++++.+. ...|  ...|.+++|+|.  ++.+|++++.||+|++|++++.
T Consensus       276 ~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~-~~~H--~~~V~~vafsP~--d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          276 AYSYHSSPFLASISEDCTVAVLDADFSEVFR-DLSH--RDFVTGVAWSPL--DHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EECSSSSCCEEEEETTSCEEEECTTSCEEEE-ECCC--SSCEEEEEECSS--STTEEEEEETTSCEEEEECC--
T ss_pred             EEcCCCCCEEEEEeCCCEEEEEECCCCcEeE-ECCC--CCCEEEEEEeCC--CCCEEEEEcCCCeEEEEECCCC
Confidence            998  3 579999999999999998765543 3344  446999999984  2238999999999999999753

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1e-35  Score=283.87  Aligned_cols=289  Identities=27%  Similarity=0.430  Sum_probs=246.8

Q ss_pred             CcccCCCCCCCcccccceeec-ceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEE
Q 016224           90 NNYRAGNSKNSNINNRAVIKT-DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG  168 (393)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~-~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~  168 (393)
                      .+|..+...+.  .....|.. .+.|+.+..+.+++|+.||.|++||+.++ +.+..+.+|...|++++|+  +++|++|
T Consensus       101 ~~w~~~~~~~~--~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~  175 (445)
T 2ovr_B          101 TNWRRGELKSP--KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTG-KCLRTLVGHTGGVWSSQMR--DNIIISG  175 (445)
T ss_dssp             HHHHHSCCCCC--EEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTC-CEEEECCCCSSCEEEEEEE--TTEEEEE
T ss_pred             hcccCCCccee--EEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCC-cEEEEEcCCCCCEEEEEec--CCEEEEE
Confidence            35665543222  12233444 46899998888899999999999999998 8899999999999999997  5699999


Q ss_pred             eCCCcEEEEECCCCeEEEEEecC-CceEEEEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCCEEEEE
Q 016224          169 SKDETVRVWDCASGQCAGVINLG-GEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAG  245 (393)
Q Consensus       169 s~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~  245 (393)
                      +.||+|++||+.+++.+..+..+ ..+.++..++..++++ .|+.|++||+.+++.+ .+..|...|.++.+++++++++
T Consensus       176 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~  255 (445)
T 2ovr_B          176 STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSG  255 (445)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEE
T ss_pred             eCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEE
Confidence            99999999999999999888755 4566666666666655 8899999999998877 7788999999999988899999


Q ss_pred             eCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCCE
Q 016224          246 TQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQF  325 (393)
Q Consensus       246 ~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~  325 (393)
                      +.||.|++||+++.    +....+.+|...|.++.+++.++++++.|+.|++||+++++++.++.+|...+.++.+++++
T Consensus       256 ~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~  331 (445)
T 2ovr_B          256 AYDFMVKVWDPETE----TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI  331 (445)
T ss_dssp             ETTSCEEEEEGGGT----EEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTE
T ss_pred             cCCCEEEEEECCCC----cEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCE
Confidence            99999999999886    56677888999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEEcCCCcceEEEEeec-CCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          326 LLSCSLDKTIKVWFATDSGNLEVTYTHN-EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       326 l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      |++++.||.|++||+++++.+..+..+. +...+.++.|.  +   .+|++++.||.|++||+.++++
T Consensus       332 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~---~~l~s~~~dg~v~iwd~~~~~~  394 (445)
T 2ovr_B          332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--K---NFVITSSDDGTVKLWDLKTGEF  394 (445)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--S---SEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--C---CEEEEEeCCCeEEEEECCCCce
Confidence            9999999999999999888777766522 34568888874  2   3899999999999999998764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4.9e-35  Score=265.70  Aligned_cols=272  Identities=19%  Similarity=0.311  Sum_probs=226.7

Q ss_pred             eEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEe--cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 016224          112 ILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQL--EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN  189 (393)
Q Consensus       112 i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l--~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  189 (393)
                      ..|++|+++++++.+.|++|+|||+.++ ++++.+  .+|...|++++|+|++++|++|+.||+|++||+++++++..+.
T Consensus        28 ~~~l~WS~~~~lAvg~D~tV~iWd~~tg-~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~  106 (318)
T 4ggc_A           28 LNLVDWSSGNVLAVALDNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT  106 (318)
T ss_dssp             CBCEEECTTSEEEEEETTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ceEEEECCCCEEEEEeCCEEEEEECCCC-CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec
Confidence            5789999999888888999999999998 666655  4688899999999999999999999999999999999999887


Q ss_pred             cCC-ceEEEEeCCCEEEEE-cCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccc
Q 016224          190 LGG-EVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCF  263 (393)
Q Consensus       190 ~~~-~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~  263 (393)
                      .+. .+.++...+.+++++ .++.+++|+.......  .+.+|...+..+.+.++  +|++++.|+.|++||++++....
T Consensus       107 ~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  186 (318)
T 4ggc_A          107 SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW  186 (318)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBS
T ss_pred             CccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccc
Confidence            664 455566677787776 7789999998876544  67889999999999887  99999999999999999876555


Q ss_pred             cCceeecCceeeEEEEEEcC---CE--EEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEE--eCCCc
Q 016224          264 EPAASLKGHSLAVVSLVVGA---NK--LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSC--SLDKT  334 (393)
Q Consensus       264 ~~~~~~~~~~~~v~~l~~~~---~~--l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~--s~dg~  334 (393)
                      ........+...|.++.+.+   +.  +++++.++.|++||.+......... +...+..+.+.  +..++++  +.|+.
T Consensus       187 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~  265 (318)
T 4ggc_A          187 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQ  265 (318)
T ss_dssp             CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCC
T ss_pred             cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCE
Confidence            55666777888898888853   33  4577889999999999887766554 56677778777  5565554  47999


Q ss_pred             EEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          335 IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       335 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      |+|||+++++.+..+..|..  .|.+++|+|++.   +|+|++.||+|+|||+.+.
T Consensus       266 i~iwd~~~~~~~~~l~gH~~--~V~~l~~spdg~---~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          266 LVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGA---TVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEEEETTTCCEEEEECCCSS--CEEEEEECTTSS---CEEEEETTTEEEEECCSCC
T ss_pred             EEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCC---EEEEEecCCeEEEEECCCC
Confidence            99999999988888877655  599999998766   8999999999999999764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-35  Score=273.15  Aligned_cols=279  Identities=19%  Similarity=0.267  Sum_probs=220.4

Q ss_pred             eec-ceEEeeEecCc--EEEecCCCeEEEEECCCCcEEE---EEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 016224          108 IKT-DILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLL---TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (393)
Q Consensus       108 ~~~-~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~---~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~  181 (393)
                      |.. .|.+++|++++  +++|+.|++|+|||+.++ +..   ....+|...|++++|+|++++|++|+.|++|+|||+.+
T Consensus        14 h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~-~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~   92 (345)
T 3fm0_A           14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGD-SWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ   92 (345)
T ss_dssp             STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETT-EEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCC-cceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccC
Confidence            444 89999999874  668999999999999877 322   23378999999999999999999999999999999987


Q ss_pred             Ce--EEEEEecC-CceEEE--EeCCCEEEEE-cCCeEEEEECCCCce----eeecCCCCcEEEEEEeCC--EEEEEeCCC
Q 016224          182 GQ--CAGVINLG-GEVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTD----LSLSGPVGQVYAMAVGND--LLFAGTQDG  249 (393)
Q Consensus       182 ~~--~~~~~~~~-~~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~----~~~~~~~~~v~~l~~~~~--~l~~~~~dg  249 (393)
                      +.  ++..+..+ ..+.++  .+++.+|+++ .|+.|++||+..+..    ..+..|...|.+++|+|+  +|++++.|+
T Consensus        93 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~  172 (345)
T 3fm0_A           93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD  172 (345)
T ss_dssp             C-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTS
T ss_pred             CCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCC
Confidence            64  45566544 345444  3678888775 889999999987643    257789999999999998  999999999


Q ss_pred             cEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCC---------------cceeeEecc-
Q 016224          250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET---------------LQCIQTLTE-  311 (393)
Q Consensus       250 ~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~---------------~~~~~~~~~-  311 (393)
                      .|++||++....  .....+.+|...|.+++|+  +++|++++.|++|++||...               .+++.++.+ 
T Consensus       173 ~i~~w~~~~~~~--~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (345)
T 3fm0_A          173 TVKLYREEEDDW--VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF  250 (345)
T ss_dssp             CEEEEEEETTEE--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSS
T ss_pred             cEEEEEecCCCE--EEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCC
Confidence            999999987532  3446788999999999996  56999999999999999632               133445554 


Q ss_pred             CccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcc----eEEEEe---ecCCccEEEEEeeeCCCCCcEEEEEeCCCeE
Q 016224          312 HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGN----LEVTYT---HNEEHGVLALCGMPDSEGKPVLLCSCNDNSV  382 (393)
Q Consensus       312 ~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~---~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I  382 (393)
                      |...|.+++|+  +..|++++.|+.|++|+......    ...+..   ..+...|.+++|+|+.+  .+|++++.||+|
T Consensus       251 h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~--~~laS~s~Dg~v  328 (345)
T 3fm0_A          251 HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP--GLLASCSDDGEV  328 (345)
T ss_dssp             CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSST--TEEEEEETTSCE
T ss_pred             CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCc--eEEEEcCCCCcE
Confidence            88899999998  67899999999999999865421    111111   13345699999998753  389999999999


Q ss_pred             EEEeCCcee
Q 016224          383 RFYDLPSVI  391 (393)
Q Consensus       383 ~iwd~~s~~  391 (393)
                      ++|++.+.+
T Consensus       329 ~~W~~~~~~  337 (345)
T 3fm0_A          329 AFWKYQRPE  337 (345)
T ss_dssp             EEEEECC--
T ss_pred             EEEEecCCC
Confidence            999998765

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.7e-35  Score=272.70  Aligned_cols=278  Identities=15%  Similarity=0.180  Sum_probs=220.0

Q ss_pred             cceeecceEEeeE-----ec-C--cEEEecCCCeEEEEECCCC------cEEEEEecCCcCCEEEEEecCCCCEEEEEeC
Q 016224          105 RAVIKTDILCRNW-----VQ-G--NCMYGEKCKFLHSWTVGDG------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSK  170 (393)
Q Consensus       105 ~~~~~~~i~c~~~-----~~-~--~~~~g~~dg~i~vwd~~~~------~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~  170 (393)
                      ...|...|+|+.|     ++ +  .+++|+.|++|++||+.++      ......+.+|...|.+++|+|++.+|++++.
T Consensus        17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~   96 (343)
T 2xzm_R           17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW   96 (343)
T ss_dssp             EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET
T ss_pred             eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcC
Confidence            3457789999999     43 3  4678999999999998743      1567789999999999999999999999999


Q ss_pred             CCcEEEEECCCCeEEEEEecC-CceEEE--EeCCCEEEEE-cCCeEEEEECCCCceeeec---CCCCcEEEEEEeCC---
Q 016224          171 DETVRVWDCASGQCAGVINLG-GEVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTDLSLS---GPVGQVYAMAVGND---  240 (393)
Q Consensus       171 dg~v~iwd~~~~~~~~~~~~~-~~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~---~~~~~v~~l~~~~~---  240 (393)
                      |++|++||+.+++.+..+..+ ..+.++  .+++.+++++ .|+.|++||+.........   .|...|.+++|+|+   
T Consensus        97 D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  176 (343)
T 2xzm_R           97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKS  176 (343)
T ss_dssp             TSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCS
T ss_pred             CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccccc
Confidence            999999999999998888754 445444  3678777765 8899999999865544333   78889999999874   


Q ss_pred             ---------EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCC-cceeeE
Q 016224          241 ---------LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET-LQCIQT  308 (393)
Q Consensus       241 ---------~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~-~~~~~~  308 (393)
                               +|++++.|+.|++||...     .....+.+|...|.+++|+  +++|++|+.|+.|++||+.+ ......
T Consensus       177 ~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~  251 (343)
T 2xzm_R          177 ANKVQPFAPYFASVGWDGRLKVWNTNF-----QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE  251 (343)
T ss_dssp             CSCCCSSCCEEEEEETTSEEEEEETTT-----EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEE
T ss_pred             ccccCCCCCEEEEEcCCCEEEEEcCCC-----ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccccee
Confidence                     699999999999999432     4456778899999999996  56999999999999999954 444444


Q ss_pred             eccCccceEEEEEcC-CEEEEEeCCCcEEEEEcCCCcceE--EEEee---------cCCccEEEEEeeeCCCCCcEEEEE
Q 016224          309 LTEHTSVVMSLLCWD-QFLLSCSLDKTIKVWFATDSGNLE--VTYTH---------NEEHGVLALCGMPDSEGKPVLLCS  376 (393)
Q Consensus       309 ~~~~~~~v~~l~~~~-~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~---------~~~~~v~~~~~~~~~~~~~~l~s~  376 (393)
                      +. +...|.+++|++ ..+++++.|+.|++||+.+.....  .+...         .+...+.+++|+|++.   +|++|
T Consensus       252 ~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~---~l~sg  327 (343)
T 2xzm_R          252 FD-AGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK---KLFAG  327 (343)
T ss_dssp             EE-CSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC---CEEEE
T ss_pred             ec-CCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC---eEEEe
Confidence            43 456799999983 234456678899999998765543  22211         2334589999998876   89999


Q ss_pred             eCCCeEEEEeCCcee
Q 016224          377 CNDNSVRFYDLPSVI  391 (393)
Q Consensus       377 s~dg~I~iwd~~s~~  391 (393)
                      +.||.|++|++++++
T Consensus       328 ~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          328 FTDGVIRTFSFETSA  342 (343)
T ss_dssp             ETTSEEEEEEEEEEE
T ss_pred             cCCceEEEEEEEccC
Confidence            999999999998874

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.8e-35  Score=291.02  Aligned_cols=281  Identities=17%  Similarity=0.204  Sum_probs=222.1

Q ss_pred             cceeecceEEeeEecCc---EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 016224          105 RAVIKTDILCRNWVQGN---CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~---~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~  181 (393)
                      ...|...|.+++|+++.   +++|+.|++|++||..++ +.+.++.+|...|++++|+|++++|++++.|++|++||+.+
T Consensus       143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~  221 (611)
T 1nr0_A          143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD  221 (611)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC
Confidence            34577899999999873   678999999999999887 88899999999999999999999999999999999999999


Q ss_pred             CeEEEEEe--------cCCceEEE--EeCCCEEEEE-cCCeEEEEECCCCcee---------------------------
Q 016224          182 GQCAGVIN--------LGGEVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTDL---------------------------  223 (393)
Q Consensus       182 ~~~~~~~~--------~~~~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~~---------------------------  223 (393)
                      ++.+..+.        +...+..+  .+++++|+++ .|++|++||+.+++..                           
T Consensus       222 g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s  301 (611)
T 1nr0_A          222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS  301 (611)
T ss_dssp             CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEE
T ss_pred             CcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEe
Confidence            99888873        33445444  3678887765 8899999999876543                           


Q ss_pred             -----------------eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccC-------c-----------
Q 016224          224 -----------------SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEP-------A-----------  266 (393)
Q Consensus       224 -----------------~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~-------~-----------  266 (393)
                                       .+.+|...|.+++|+|+  +|++++.|+.|++||+.++......       +           
T Consensus       302 ~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l  381 (611)
T 1nr0_A          302 ANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL  381 (611)
T ss_dssp             TTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE
T ss_pred             CCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcE
Confidence                             23478899999999998  9999999999999998754211000       0           


Q ss_pred             --------------------------eeec----------------------------------CceeeEEEEEEc--CC
Q 016224          267 --------------------------ASLK----------------------------------GHSLAVVSLVVG--AN  284 (393)
Q Consensus       267 --------------------------~~~~----------------------------------~~~~~v~~l~~~--~~  284 (393)
                                                ..+.                                  .|...+.+++++  ++
T Consensus       382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~  461 (611)
T 1nr0_A          382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ  461 (611)
T ss_dssp             EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC
T ss_pred             EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC
Confidence                                      0000                                  012335566665  67


Q ss_pred             EEEEecCCCcEEEeeCCCcce--eeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEE-EeecCCccEE
Q 016224          285 KLYSGSMDNSIRVWNLETLQC--IQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVT-YTHNEEHGVL  359 (393)
Q Consensus       285 ~l~sg~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~  359 (393)
                      +|++|+.|++|++||+.+++.  +.. ..|...|.+++|+  +++|++++.|++|++||+.+...+... ....+...|.
T Consensus       462 ~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~  540 (611)
T 1nr0_A          462 FVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVA  540 (611)
T ss_dssp             EEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEE
T ss_pred             EEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeeccccee
Confidence            999999999999999987643  344 6799999999998  679999999999999999763322211 1111345699


Q ss_pred             EEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          360 ALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       360 ~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      +++|+|++.   +|++++.|++|++|++.++
T Consensus       541 ~v~fspdg~---~lasgs~D~~v~lW~~~~~  568 (611)
T 1nr0_A          541 CVSWSPDNV---RLATGSLDNSVIVWNMNKP  568 (611)
T ss_dssp             EEEECTTSS---EEEEEETTSCEEEEETTCT
T ss_pred             EEEECCCCC---EEEEEECCCcEEEEECCCc
Confidence            999998766   9999999999999999865

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.8e-34  Score=275.25  Aligned_cols=275  Identities=25%  Similarity=0.426  Sum_probs=242.8

Q ss_pred             cceeecceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 016224          105 RAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC  184 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~  184 (393)
                      ...|...|.++.|+++.+++|+.||.|++||+.++ +.+..+.+|...|.+++|+  +++|++++.||+|++||+.+++.
T Consensus       155 ~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~  231 (445)
T 2ovr_B          155 LVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG-ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQC  231 (445)
T ss_dssp             CCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCE
T ss_pred             EcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC-cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcE
Confidence            34577899999999888999999999999999998 8999999999999999996  56899999999999999999999


Q ss_pred             EEEEecC-CceEEEEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCc
Q 016224          185 AGVINLG-GEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTN  261 (393)
Q Consensus       185 ~~~~~~~-~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~  261 (393)
                      +..+..+ ..+.++..++.+++++ .|+.|++||+++++.+ .+..|...|.++.+++..+++++.|+.|++||++++  
T Consensus       232 ~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~--  309 (445)
T 2ovr_B          232 LHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG--  309 (445)
T ss_dssp             EEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTC--
T ss_pred             EEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCC--
Confidence            8888754 4566666677766665 7899999999998877 777899999999997779999999999999999887  


Q ss_pred             cccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEecc---CccceEEEEEcCCEEEEEeCCCcEEEE
Q 016224          262 CFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTE---HTSVVMSLLCWDQFLLSCSLDKTIKVW  338 (393)
Q Consensus       262 ~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~~~~~l~s~s~dg~i~iw  338 (393)
                        +....+.+|...+.++.+++++|++++.||.|++||+++++++..+..   |...|.++.+++++|++++.||.|++|
T Consensus       310 --~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iw  387 (445)
T 2ovr_B          310 --NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW  387 (445)
T ss_dssp             --CEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEE
T ss_pred             --CEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEE
Confidence              556778889999999999999999999999999999999999999986   888999999999999999999999999


Q ss_pred             EcCCCcceEEEEe---ecCCccEEEEEeeeCCCCCcEEEEEeCCCe----EEEEeCCc
Q 016224          339 FATDSGNLEVTYT---HNEEHGVLALCGMPDSEGKPVLLCSCNDNS----VRFYDLPS  389 (393)
Q Consensus       339 d~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~----I~iwd~~s  389 (393)
                      |+.+++.+..+..   ......+.+++|+|+..   +|++++.||+    |.+||+..
T Consensus       388 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          388 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL---VCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             ETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE---EEEEECSSSSSCCEEEEEECCC
T ss_pred             ECCCCceeeeeeccccCCCCceEEEEEecCCEE---EEEEcccCCCCccEEEEEECCC
Confidence            9998887766632   23445699999987655   9999999998    99999874

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-34  Score=270.91  Aligned_cols=273  Identities=20%  Similarity=0.285  Sum_probs=228.0

Q ss_pred             ceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecC-CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 016224          111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEG-HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN  189 (393)
Q Consensus       111 ~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~-h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  189 (393)
                      .+.++.|+++.+++++.|+.|++||+.++ +....+.. |...|++++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus        95 ~~~~~~~s~~~l~~~~~d~~v~lw~~~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  173 (401)
T 4aez_A           95 YLNLLDWSNLNVVAVALERNVYVWNADSG-SVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA  173 (401)
T ss_dssp             TCBCEEECTTSEEEEEETTEEEEEETTTC-CEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             eEEEEeecCCCEEEEECCCeEEEeeCCCC-cEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec
Confidence            56778899999999999999999999998 56555554 89999999999999999999999999999999999988886


Q ss_pred             cC-CceEEEEeCCCEEEEE-cCCeEEEEECCCC-cee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccc
Q 016224          190 LG-GEVGCMISEGPWIFIG-VTNFVKAWNTQTN-TDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCF  263 (393)
Q Consensus       190 ~~-~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~-~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~  263 (393)
                      .+ ..+.++..++.+++++ .++.|++||++.. ... .+..|...|.+++|+++  +|++++.|+.|++||++..    
T Consensus       174 ~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~----  249 (401)
T 4aez_A          174 GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS----  249 (401)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS----
T ss_pred             CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC----
Confidence            54 4566666677777765 8899999999843 333 78889999999999988  9999999999999999876    


Q ss_pred             cCceeecCceeeEEEEEEcC---CEEEEec--CCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEE--eCCCc
Q 016224          264 EPAASLKGHSLAVVSLVVGA---NKLYSGS--MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSC--SLDKT  334 (393)
Q Consensus       264 ~~~~~~~~~~~~v~~l~~~~---~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~--s~dg~  334 (393)
                      .+...+..|...|.+++|++   .++++++  .|+.|++||+++++++..+. +...+.++.|+  +.+|+++  +.|+.
T Consensus       250 ~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~  328 (401)
T 4aez_A          250 IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNN  328 (401)
T ss_dssp             SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCE
T ss_pred             CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCc
Confidence            55667778999999999974   4677765  79999999999999998886 56789999998  6788884  48999


Q ss_pred             EEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          335 IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       335 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      |++||+.+...........+...+..++|+|++.   +|++++.||.|++|++.+++.
T Consensus       329 i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~---~l~s~~~dg~i~iw~~~~~~~  383 (401)
T 4aez_A          329 LSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGR---ILSTAASDENLKFWRVYDGDH  383 (401)
T ss_dssp             EEEEEEETTEEEEEEEEECCSSCCCEEEECTTSS---EEEEECTTSEEEEEECCC---
T ss_pred             EEEEecCCccceeEEEecCCCCCEEEEEECCCCC---EEEEEeCCCcEEEEECCCCcc
Confidence            9999998765555443334455688999988766   999999999999999998764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2e-35  Score=277.02  Aligned_cols=282  Identities=15%  Similarity=0.135  Sum_probs=234.9

Q ss_pred             ceeecceEEeeEecCcEEEecCCCeEEEEECCCCc-----EEEEEecCCcCCEEEEEecCC----C---CEEEEEeCCCc
Q 016224          106 AVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGF-----KLLTQLEGHQKVVSGITLPSG----S---DKLYSGSKDET  173 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~-----~~~~~l~~h~~~I~~i~~s~~----~---~~l~s~s~dg~  173 (393)
                      ..|..+|+|++|++..+++|+.||.|++||+.++.     +.+..+.+|...|++++|+|+    +   ++|++++.||.
T Consensus        13 ~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~   92 (397)
T 1sq9_A           13 KAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGD   92 (397)
T ss_dssp             SCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSC
T ss_pred             hhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCC
Confidence            35778999999999888899999999999999872     267888899999999999999    9   99999999999


Q ss_pred             EEEEECCCCeE-----EEEEecC------CceEE--EE----eCCCE-EEEE-cCCeEEEEECCC------Ccee-----
Q 016224          174 VRVWDCASGQC-----AGVINLG------GEVGC--MI----SEGPW-IFIG-VTNFVKAWNTQT------NTDL-----  223 (393)
Q Consensus       174 v~iwd~~~~~~-----~~~~~~~------~~~~~--~~----~~~~~-l~~~-~~~~i~v~d~~~------~~~~-----  223 (393)
                      |++||+.+++.     ...+...      ..+.+  +.    +++.+ ++++ .++.|++||+.+      ++.+     
T Consensus        93 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  172 (397)
T 1sq9_A           93 LLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPT  172 (397)
T ss_dssp             EEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCE
T ss_pred             EEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCc
Confidence            99999998876     6777655      44543  44    56777 7665 889999999988      4432     


Q ss_pred             -ee-------cCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccccCceeecC---c---eeeEEEEEEc--CCEE
Q 016224          224 -SL-------SGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKG---H---SLAVVSLVVG--ANKL  286 (393)
Q Consensus       224 -~~-------~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~---~---~~~v~~l~~~--~~~l  286 (393)
                       .+       ..|...|.+++|+++ +|++++.|+.|++||++..    +.+..+..   |   ...|.+++++  +++|
T Consensus       173 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l  248 (397)
T 1sq9_A          173 LELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL----RPLYNFESQHSMINNSNSIRSVKFSPQGSLL  248 (397)
T ss_dssp             EEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT----EEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred             ceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCC----ceeEEEeccccccccCCccceEEECCCCCEE
Confidence             33       457889999999988 9999999999999999876    55666777   8   8899999996  6699


Q ss_pred             EEecCC---CcEEEeeCCCcceeeEecc-------------CccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEE
Q 016224          287 YSGSMD---NSIRVWNLETLQCIQTLTE-------------HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEV  348 (393)
Q Consensus       287 ~sg~~d---g~i~iwd~~~~~~~~~~~~-------------~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~  348 (393)
                      ++++.|   +.|++||+++++.+..+..             |...|.++.|+  +++|++++.|+.|++||+.+.+.+..
T Consensus       249 ~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  328 (397)
T 1sq9_A          249 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT  328 (397)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEE
Confidence            999999   9999999999999999998             99999999998  67999999999999999998887777


Q ss_pred             EE------ee-------------cCCccEEEEEeeeCCC-------CCcEEEEEeCCCeEEEEeCCcee
Q 016224          349 TY------TH-------------NEEHGVLALCGMPDSE-------GKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       349 ~~------~~-------------~~~~~v~~~~~~~~~~-------~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      +.      .+             .+...+.+++|+|++.       +.++|++++.||.|++|++.+++
T Consensus       329 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          329 LNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             EECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             EecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            76      43             0045699999999851       11389999999999999998874

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-34  Score=265.61  Aligned_cols=277  Identities=13%  Similarity=0.190  Sum_probs=238.1

Q ss_pred             cceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224          105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      ...|..+|+|++|++++  +++|+.|+.|++||+.++ +.+..+.+|...|++++|+|++++|++++.||.|++||+.++
T Consensus        28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  106 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG  106 (369)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred             EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            34577899999999874  567999999999999998 888999999999999999999999999999999999999999


Q ss_pred             eEEEEEecCCceEEEE--eCCCEEEEE-cC-----CeEEEEECCCCce------------eeecCCCC--cEEEEEEeCC
Q 016224          183 QCAGVINLGGEVGCMI--SEGPWIFIG-VT-----NFVKAWNTQTNTD------------LSLSGPVG--QVYAMAVGND  240 (393)
Q Consensus       183 ~~~~~~~~~~~~~~~~--~~~~~l~~~-~~-----~~i~v~d~~~~~~------------~~~~~~~~--~v~~l~~~~~  240 (393)
                      +.+..+.....+..+.  +++.+++++ .+     +.|.+||+.....            ..+..+..  .+.+++|+++
T Consensus       107 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (369)
T 3zwl_B          107 QCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTK  186 (369)
T ss_dssp             CEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGG
T ss_pred             cEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCC
Confidence            9999998777766554  578888876 55     8999999876642            23444555  8999999987


Q ss_pred             --EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccce
Q 016224          241 --LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVV  316 (393)
Q Consensus       241 --~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v  316 (393)
                        +|++++.||.|++||++...   .....+..|...|.+++++  +++|++++.|+.|++||+++++.+..+. +...+
T Consensus       187 ~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~  262 (369)
T 3zwl_B          187 GKYIIAGHKDGKISKYDVSNNY---EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPL  262 (369)
T ss_dssp             GCEEEEEETTSEEEEEETTTTT---EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCE
T ss_pred             CCEEEEEcCCCEEEEEECCCCc---EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCc
Confidence              99999999999999998742   5567778899999999996  5689999999999999999999998887 77889


Q ss_pred             EEEEEc--CCEEEEEeCCC--------------cEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCC
Q 016224          317 MSLLCW--DQFLLSCSLDK--------------TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN  380 (393)
Q Consensus       317 ~~l~~~--~~~l~s~s~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg  380 (393)
                      ..+.++  ++++++++.++              .+++||+.+.+.+..+..|..  .+.+++|+|++.   +|++++.||
T Consensus       263 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~s~~~~---~l~s~~~dg  337 (369)
T 3zwl_B          263 NTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG--PLNTVAISPQGT---SYASGGEDG  337 (369)
T ss_dssp             EEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSS---EEEEEETTS
T ss_pred             eeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC--cEEEEEECCCCC---EEEEEcCCC
Confidence            999998  67999999888              899999998888877776654  499999988765   999999999


Q ss_pred             eEEEEeCCcee
Q 016224          381 SVRFYDLPSVI  391 (393)
Q Consensus       381 ~I~iwd~~s~~  391 (393)
                      .|++|+++++.
T Consensus       338 ~v~iw~~~~~~  348 (369)
T 3zwl_B          338 FIRLHHFEKSY  348 (369)
T ss_dssp             EEEEEEECHHH
T ss_pred             eEEEEECcccc
Confidence            99999998753

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.4e-34  Score=264.76  Aligned_cols=244  Identities=20%  Similarity=0.313  Sum_probs=210.9

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc-eEE--EEeCCCEEEEE-cCCeEEEEE
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-VGC--MISEGPWIFIG-VTNFVKAWN  216 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-~~~--~~~~~~~l~~~-~~~~i~v~d  216 (393)
                      +...++.+|...|++++|+|++++|++++.||+|+|||+.+++.+..+..+.. +.+  +.+++.+++++ .|+.|++|+
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~  125 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            56788999999999999999999999999999999999999998888876544 333  34678888875 889999999


Q ss_pred             CCCCc----e-eeecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEE
Q 016224          217 TQTNT----D-LSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYS  288 (393)
Q Consensus       217 ~~~~~----~-~~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s  288 (393)
                      +.+..    . ..+.+|...|.++.|+++ .+++++.|+.|++||+.++    +....+.+|...|.+++++  +.+|++
T Consensus       126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s  201 (340)
T 1got_B          126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG----QQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             TTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             CccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCC----cEEEEEcCCCCceEEEEECCCCCEEEE
Confidence            98753    1 267789999999999887 8999999999999999886    5567788999999999996  458999


Q ss_pred             ecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeC
Q 016224          289 GSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD  366 (393)
Q Consensus       289 g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  366 (393)
                      |+.|+.|++||+++++++.++.+|...|.+++|+  +++|++++.|++|++||+++.+.+..+........+.+++|+|+
T Consensus       202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  281 (340)
T 1got_B          202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS  281 (340)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred             EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCC
Confidence            9999999999999999999999999999999998  67999999999999999988766555443333346899999887


Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          367 SEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       367 ~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      +.   +|++|+.||.|++||+.+++
T Consensus       282 g~---~l~~g~~d~~i~vwd~~~~~  303 (340)
T 1got_B          282 GR---LLLAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             SS---EEEEEETTSEEEEEETTTCC
T ss_pred             CC---EEEEECCCCeEEEEEcccCc
Confidence            66   99999999999999998764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.2e-35  Score=274.76  Aligned_cols=279  Identities=13%  Similarity=0.114  Sum_probs=225.7

Q ss_pred             eeecceEEeeEec----C--cEEEecCCCeEEEEECCCCcEEEEEecC-----CcCCEEEEEecCC----CCEEEEEeCC
Q 016224          107 VIKTDILCRNWVQ----G--NCMYGEKCKFLHSWTVGDGFKLLTQLEG-----HQKVVSGITLPSG----SDKLYSGSKD  171 (393)
Q Consensus       107 ~~~~~i~c~~~~~----~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~-----h~~~I~~i~~s~~----~~~l~s~s~d  171 (393)
                      .|..+|+|++|++    +  .+++++.++.|++||+.++ +.+..+..     |...|++++|+|+    +++|++++.|
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d   94 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ-GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR   94 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG-GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC-cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC
Confidence            4778999999996    2  3667888889999999876 44444443     6688999999998    6799999999


Q ss_pred             CcEEEEECCCCeEEEEEec-CCceEEEE--e-CCCEEEEE-cCCeEEEEECCCCcee-ee---cCCCCcEEEEEEeCC--
Q 016224          172 ETVRVWDCASGQCAGVINL-GGEVGCMI--S-EGPWIFIG-VTNFVKAWNTQTNTDL-SL---SGPVGQVYAMAVGND--  240 (393)
Q Consensus       172 g~v~iwd~~~~~~~~~~~~-~~~~~~~~--~-~~~~l~~~-~~~~i~v~d~~~~~~~-~~---~~~~~~v~~l~~~~~--  240 (393)
                      |.|++||+.+++.+..+.. ...+.++.  + ++.+++++ .|+.|++||+++++.. .+   ..|...|.+++|+++  
T Consensus        95 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  174 (366)
T 3k26_A           95 GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE  174 (366)
T ss_dssp             CEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSS
T ss_pred             CEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCC
Confidence            9999999999999988874 45555544  4 67777775 7899999999998877 33   589999999999987  


Q ss_pred             EEEEEeCCCcEEEEEeccCCcccc------------------------CceeecCceeeEEEEEEcCCEEEEecCCCcEE
Q 016224          241 LLFAGTQDGAILAWKFNVTTNCFE------------------------PAASLKGHSLAVVSLVVGANKLYSGSMDNSIR  296 (393)
Q Consensus       241 ~l~~~~~dg~I~vwd~~~~~~~~~------------------------~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~  296 (393)
                      +|++++.||.|++||++.......                        .......|...|.++++++++|++++.|+.|+
T Consensus       175 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~  254 (366)
T 3k26_A          175 KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIV  254 (366)
T ss_dssp             EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEE
T ss_pred             EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEE
Confidence            999999999999999986532100                        11222348889999999999999999999999


Q ss_pred             EeeCCCcce--------------eeEeccCccceEEEEEc----CCEEEEEeCCCcEEEEEcCCCcce----EEEEeecC
Q 016224          297 VWNLETLQC--------------IQTLTEHTSVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNL----EVTYTHNE  354 (393)
Q Consensus       297 iwd~~~~~~--------------~~~~~~~~~~v~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~~  354 (393)
                      +||+++++.              +..+..|...|.+++|+    +++|++++.||.|++||+.+++..    ..+..+..
T Consensus       255 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  334 (366)
T 3k26_A          255 CWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKC  334 (366)
T ss_dssp             EEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTC
T ss_pred             EEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEccccc
Confidence            999987654              77888898888888776    679999999999999999877543    24444443


Q ss_pred             CccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          355 EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       355 ~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      ...+.+++|+|++.   +|++++.||.|++||+.+
T Consensus       335 ~~~v~~~~~s~~~~---~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          335 GAAIRQTSFSRDSS---ILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             CSCEEEEEECTTSS---EEEEEETTSEEEEEEC--
T ss_pred             CCceEEEEeCCCCC---eEEEEeCCCEEEEEEecC
Confidence            56799999998766   999999999999999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-34  Score=270.47  Aligned_cols=272  Identities=16%  Similarity=0.253  Sum_probs=232.8

Q ss_pred             eecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEE
Q 016224          108 IKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA  185 (393)
Q Consensus       108 ~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  185 (393)
                      |...|+|++|++++  +++|+.|+.|++|| .++ +.+..+.+|...|++++|+|++++|++++.|+.|++||+.+++.+
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  184 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTG-ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM  184 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTS-CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCC-CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence            56799999999773  66799999999999 455 788899999999999999999999999999999999999999998


Q ss_pred             EEEecCCc----------------e--EEEEeCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEE
Q 016224          186 GVINLGGE----------------V--GCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFA  244 (393)
Q Consensus       186 ~~~~~~~~----------------~--~~~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~  244 (393)
                      ..+.....                +  ..+.+++.+++++.++.|++||+.+++.. .+..|...|.+++|+++  +|++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  264 (425)
T 1r5m_A          185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS  264 (425)
T ss_dssp             EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred             EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE
Confidence            88875543                2  22345666666668999999999998776 67789999999999987  8999


Q ss_pred             EeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC-EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc-
Q 016224          245 GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN-KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-  322 (393)
Q Consensus       245 ~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-  322 (393)
                      ++.|+.|++||++..    +....+..|...|.++.++++ +|++++.|+.|++||+++++.+..+..|...+.++.|+ 
T Consensus       265 ~~~d~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~  340 (425)
T 1r5m_A          265 ASDDGTLRIWHGGNG----NSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ  340 (425)
T ss_dssp             EETTSCEEEECSSSB----SCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT
T ss_pred             EcCCCEEEEEECCCC----ccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC
Confidence            999999999999876    556777889999999999754 99999999999999999999999999999999999998 


Q ss_pred             -CCEEEEEeCCCcEEEEEcCCCc--------------------ceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCe
Q 016224          323 -DQFLLSCSLDKTIKVWFATDSG--------------------NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNS  381 (393)
Q Consensus       323 -~~~l~s~s~dg~i~iwd~~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~  381 (393)
                       +++|++++.|+.|++||+.+..                    .+..+..+.....+..++|+|++.   +|++++.||.
T Consensus       341 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~  417 (425)
T 1r5m_A          341 DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN---KISVAYSLQE  417 (425)
T ss_dssp             TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS---EEEEEESSSC
T ss_pred             CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc---eEEEEecCce
Confidence             6799999999999999998766                    444444443322699999988766   9999999999


Q ss_pred             EEEEeCC
Q 016224          382 VRFYDLP  388 (393)
Q Consensus       382 I~iwd~~  388 (393)
                      |++|+++
T Consensus       418 i~iw~~~  424 (425)
T 1r5m_A          418 GSVVAIP  424 (425)
T ss_dssp             CEEEECC
T ss_pred             EEEEeec
Confidence            9999986

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.4e-34  Score=273.18  Aligned_cols=241  Identities=23%  Similarity=0.333  Sum_probs=212.1

Q ss_pred             EEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-ceEEEE--eCCCEEEEE-cCCeEEEEECC
Q 016224          143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG-EVGCMI--SEGPWIFIG-VTNFVKAWNTQ  218 (393)
Q Consensus       143 ~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~--~~~~~l~~~-~~~~i~v~d~~  218 (393)
                      ...+.+|..+|++++|+|++++|++|+.||+|+|||+.+++....+..+. .+.++.  +++.+++++ .|+.|++||+.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            45678999999999999999999999999999999999999988887654 454443  577777765 88999999999


Q ss_pred             CCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCC
Q 016224          219 TNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDN  293 (393)
Q Consensus       219 ~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg  293 (393)
                      +.+.+ .+.+|...|.+++|+|+  +|++++.|+.|++||++++    ..+..+.+|...|.++.++  +.+|++++.|+
T Consensus       181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~----~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~  256 (410)
T 1vyh_C          181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG----YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ  256 (410)
T ss_dssp             SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----cEEEEEeCCCccEEEEEECCCCCEEEEEcCCC
Confidence            98876 77889999999999987  9999999999999999887    5567788999999999986  56899999999


Q ss_pred             cEEEeeCCCcceeeEeccCccceEEEEEcC----------------------CEEEEEeCCCcEEEEEcCCCcceEEEEe
Q 016224          294 SIRVWNLETLQCIQTLTEHTSVVMSLLCWD----------------------QFLLSCSLDKTIKVWFATDSGNLEVTYT  351 (393)
Q Consensus       294 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~----------------------~~l~s~s~dg~i~iwd~~~~~~~~~~~~  351 (393)
                      +|++||++++++...+..|...|.++.|++                      .+|++|+.|+.|++||++++..+..+..
T Consensus       257 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~  336 (410)
T 1vyh_C          257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG  336 (410)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC
Confidence            999999999999999999999999999973                      4899999999999999998888777776


Q ss_pred             ecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          352 HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       352 ~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      |..  .+.+++|+|++.   +|++++.|+.|++||+.++++
T Consensus       337 h~~--~v~~v~~~~~g~---~l~s~s~D~~i~vwd~~~~~~  372 (410)
T 1vyh_C          337 HDN--WVRGVLFHSGGK---FILSCADDKTLRVWDYKNKRC  372 (410)
T ss_dssp             CSS--CEEEEEECSSSS---CEEEEETTTEEEEECCTTSCC
T ss_pred             CCC--cEEEEEEcCCCC---EEEEEeCCCeEEEEECCCCce
Confidence            654  588999988765   899999999999999987653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.8e-34  Score=288.12  Aligned_cols=276  Identities=18%  Similarity=0.257  Sum_probs=224.6

Q ss_pred             ceeecceEEeeEecC---cEEEecCCCeEEEEECCCC----cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEE
Q 016224          106 AVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDG----FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~---~~~~g~~dg~i~vwd~~~~----~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd  178 (393)
                      ..|...|+|++|+++   .+++|+.|++|++|++.+.    ......+.+|...|++++|+|++++|+||+.||+|+|||
T Consensus       379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd  458 (694)
T 3dm0_A          379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD  458 (694)
T ss_dssp             ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            357889999999864   3678999999999998753    145678999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEecC-CceEEEE--eCCCEEEE-EcCCeEEEEECCCCceeee----cCCCCcEEEEEEeCC----EEEEEe
Q 016224          179 CASGQCAGVINLG-GEVGCMI--SEGPWIFI-GVTNFVKAWNTQTNTDLSL----SGPVGQVYAMAVGND----LLFAGT  246 (393)
Q Consensus       179 ~~~~~~~~~~~~~-~~~~~~~--~~~~~l~~-~~~~~i~v~d~~~~~~~~~----~~~~~~v~~l~~~~~----~l~~~~  246 (393)
                      +.+++.+..+..+ ..+.++.  +++.++++ +.|+.|++||........+    .+|...|.+++|+++    .|++++
T Consensus       459 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s  538 (694)
T 3dm0_A          459 LAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSAS  538 (694)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred             CCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEe
Confidence            9999998888755 4454443  56766665 5889999999877655433    468889999999986    799999


Q ss_pred             CCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcC-
Q 016224          247 QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD-  323 (393)
Q Consensus       247 ~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-  323 (393)
                      .|+.|++||++..    +....+.+|...|.+++++  +++|++++.|+.|++||+++++.+..+.. ...+.+++|++ 
T Consensus       539 ~d~~v~vwd~~~~----~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~  613 (694)
T 3dm0_A          539 WDKTVKVWNLSNC----KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPN  613 (694)
T ss_dssp             TTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSS
T ss_pred             CCCeEEEEECCCC----cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCC
Confidence            9999999999876    5567788999999999996  56999999999999999999999888864 45799999983 


Q ss_pred             CEEEEEeCCCcEEEEEcCCCcceEEEEeec-----------------CCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          324 QFLLSCSLDKTIKVWFATDSGNLEVTYTHN-----------------EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       324 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                      ..+++++.|+.|+|||+++...+..+..+.                 ....+.+++|+|++.   +|++|+.||.|+||+
T Consensus       614 ~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~---~l~sgs~Dg~i~iW~  690 (694)
T 3dm0_A          614 RYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGS---TLFSGYTDGVIRVWG  690 (694)
T ss_dssp             SSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSS---EEEEEETTSEEEEEE
T ss_pred             CcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCC---EEEEEcCCCeEEEEe
Confidence            344555567789999998877665543211                 112367889988766   999999999999999


Q ss_pred             CCc
Q 016224          387 LPS  389 (393)
Q Consensus       387 ~~s  389 (393)
                      +..
T Consensus       691 i~~  693 (694)
T 3dm0_A          691 IGR  693 (694)
T ss_dssp             C--
T ss_pred             ccC
Confidence            864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.3e-34  Score=263.43  Aligned_cols=244  Identities=20%  Similarity=0.284  Sum_probs=210.1

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc---eEEEEeCCCEEEEE-cCCeEEEEE
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE---VGCMISEGPWIFIG-VTNFVKAWN  216 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~-~~~~i~v~d  216 (393)
                      +...++++|...|++++|+|++++|+||+.||+|+|||..+++....+..+..   ...+.+++..++++ .|+.+++|+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            56778999999999999999999999999999999999999988887776533   23445788888887 788999999


Q ss_pred             CCCCc-------eeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc----C
Q 016224          217 TQTNT-------DLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG----A  283 (393)
Q Consensus       217 ~~~~~-------~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~----~  283 (393)
                      +....       ...+..|...|.++.|+++  .|++++.|++|++||++++    +.+..+.+|...|.++++.    +
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~g  210 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG----QLLQSFHGHGADVLCLDLAPSETG  210 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECCCSSC
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC----eEEEEEcCCCCCeEEEEEEeCCCC
Confidence            86542       2356789999999999987  8999999999999999887    5677888999999988874    4


Q ss_pred             CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEE
Q 016224          284 NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLAL  361 (393)
Q Consensus       284 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~  361 (393)
                      ++|++|+.|+.|++||+++++++..+..|...|.+++|+  +.+|++++.|++|++||++....+..+..+.....+.++
T Consensus       211 ~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~  290 (354)
T 2pbi_B          211 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSV  290 (354)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEE
Confidence            699999999999999999999999999999999999997  679999999999999999887666555444444568889


Q ss_pred             EeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          362 CGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       362 ~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      +|+|++.   +|++++.|+.|++||+.+++
T Consensus       291 ~~s~~g~---~l~~g~~d~~i~vwd~~~~~  317 (354)
T 2pbi_B          291 DFSLSGR---LLFAGYNDYTINVWDVLKGS  317 (354)
T ss_dssp             EECTTSS---EEEEEETTSCEEEEETTTCS
T ss_pred             EEeCCCC---EEEEEECCCcEEEEECCCCc
Confidence            9988766   99999999999999998764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.9e-34  Score=283.82  Aligned_cols=278  Identities=19%  Similarity=0.229  Sum_probs=224.9

Q ss_pred             cccceeecceEEeeEecCc--EEEecCCCeEEEEECCCC-cEEEEEecCCcCCEEEEEecCCCCEEEEEeCC----CcEE
Q 016224          103 NNRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD----ETVR  175 (393)
Q Consensus       103 ~~~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d----g~v~  175 (393)
                      .....|...|+|++|++++  +++|+.|++|+|||+.++ .....++.+|...|.+++|+|++++|++++.+    ++|+
T Consensus        53 ~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~  132 (611)
T 1nr0_A           53 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF  132 (611)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEE
T ss_pred             eEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEE
Confidence            3445688899999999874  567999999999998643 24566889999999999999999999999875    4788


Q ss_pred             EEECCCCeEEEEEecCC-ceEEE--EeCCC-EEEE-EcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeC
Q 016224          176 VWDCASGQCAGVINLGG-EVGCM--ISEGP-WIFI-GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQ  247 (393)
Q Consensus       176 iwd~~~~~~~~~~~~~~-~~~~~--~~~~~-~l~~-~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~  247 (393)
                      +||.  ++....+..+. .+.++  .+++. .+++ +.|+.|++||..+++.. .+.+|...|.+++|+|+  +|++++.
T Consensus       133 ~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~  210 (611)
T 1nr0_A          133 LFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG  210 (611)
T ss_dssp             ETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EeeC--CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC
Confidence            8874  55555554443 34433  34554 3554 58899999999887766 78899999999999998  9999999


Q ss_pred             CCcEEEEEeccCCccccCceee-------cCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEecc---Cccc
Q 016224          248 DGAILAWKFNVTTNCFEPAASL-------KGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTE---HTSV  315 (393)
Q Consensus       248 dg~I~vwd~~~~~~~~~~~~~~-------~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---~~~~  315 (393)
                      |++|++||+.++.    ....+       .+|...|.+++|+  +++|++++.|++|++||+++++++.++..   +...
T Consensus       211 D~~i~lwd~~~g~----~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~  286 (611)
T 1nr0_A          211 DGTIVLYNGVDGT----KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ  286 (611)
T ss_dssp             TSCEEEEETTTCC----EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred             CCcEEEEECCCCc----EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccce
Confidence            9999999988763    23333       2799999999996  56999999999999999999999888864   3445


Q ss_pred             eEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          316 VMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       316 v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      +..+.+.++.+++++.|+.|++||...+.....+..|..  .+.+++|+|++.   +|++++.|++|++||+.+++
T Consensus       287 ~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~--~v~~l~~spdg~---~l~s~s~D~~v~~Wd~~~~~  357 (611)
T 1nr0_A          287 QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK--AITALSSSADGK---TLFSADAEGHINSWDISTGI  357 (611)
T ss_dssp             EEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSS---EEEEEETTSCEEEEETTTCC
T ss_pred             eEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC--CEEEEEEeCCCC---EEEEEeCCCcEEEEECCCCc
Confidence            677888899999999999999999987765555555544  599999988765   99999999999999998764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.9e-34  Score=268.16  Aligned_cols=275  Identities=13%  Similarity=0.149  Sum_probs=217.5

Q ss_pred             ceeecceEEeeEecCc---EEEecCCCeEEEEECCCCcEEEEEec--CCcCCEEEEEecC-CCCEEEEEeCCCcEEEEEC
Q 016224          106 AVIKTDILCRNWVQGN---CMYGEKCKFLHSWTVGDGFKLLTQLE--GHQKVVSGITLPS-GSDKLYSGSKDETVRVWDC  179 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~~---~~~g~~dg~i~vwd~~~~~~~~~~l~--~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~  179 (393)
                      ..|...|.|++|++++   +++|+.|+.|++||+.++ +....+.  +|...|.+++|+| ++++|++++.|+.|++||+
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~  148 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDF  148 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEET
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEEC
Confidence            4567799999999875   668999999999999977 4444444  7999999999999 7899999999999999999


Q ss_pred             CCCeEEEEEecC----CceEE--EEeCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCC
Q 016224          180 ASGQCAGVINLG----GEVGC--MISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDG  249 (393)
Q Consensus       180 ~~~~~~~~~~~~----~~~~~--~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg  249 (393)
                      .+ +.+..+...    ..+.+  +.+++.+++++ .++.|++||+.......+..|...|.+++|+++   +|++++.|+
T Consensus       149 ~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  227 (383)
T 3ei3_B          149 SG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDA  227 (383)
T ss_dssp             TS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             CC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCC
Confidence            86 444444332    22333  44678888876 788999999966555688899999999999987   899999999


Q ss_pred             cEEEEEeccCCccccCceeecCceeeEEEEEEcC---CEEEEecCCCcEEEeeCCCcceeeEeccCc-------------
Q 016224          250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLTEHT-------------  313 (393)
Q Consensus       250 ~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-------------  313 (393)
                      .|++||++...........+ +|...|.+++|++   ++|++++.|+.|++||+++++.+..+..|.             
T Consensus       228 ~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (383)
T 3ei3_B          228 TVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT  306 (383)
T ss_dssp             EEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCE
T ss_pred             EEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEe
Confidence            99999999854322344444 6889999999865   699999999999999999988887776553             


Q ss_pred             ----cceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          314 ----SVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       314 ----~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                          ..+..+.++  +++  +++.|+.|+|||+.+++.+..+..+.....+..++|+|++.   +|++++ |+.|++||+
T Consensus       307 ~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~---~l~s~s-d~~i~iw~~  380 (383)
T 3ei3_B          307 WHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGD---VLASGM-GFNILIWNR  380 (383)
T ss_dssp             ECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSS---EEEEEE-TTEEEEEEC
T ss_pred             ccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCcc---EEEEec-CCcEEEEec
Confidence                223334444  333  77789999999999888877777654444566678888765   899997 999999999


Q ss_pred             Cc
Q 016224          388 PS  389 (393)
Q Consensus       388 ~s  389 (393)
                      ++
T Consensus       381 ~~  382 (383)
T 3ei3_B          381 ED  382 (383)
T ss_dssp             C-
T ss_pred             CC
Confidence            75

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-33  Score=253.39  Aligned_cols=274  Identities=18%  Similarity=0.212  Sum_probs=226.7

Q ss_pred             cceeecceEEeeEecC-cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC-
Q 016224          105 RAVIKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG-  182 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~-~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~-  182 (393)
                      ...|...|.|++|.++ .+++|+.||.|++||+.++ +....+..|...|.+++|+|++++|++++.||.|++|++... 
T Consensus        14 l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~   92 (313)
T 3odt_A           14 LKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQ-WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS   92 (313)
T ss_dssp             ECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSS-EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT
T ss_pred             hhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCC-EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC
Confidence            3457789999999555 4667999999999999887 888889999999999999999999999999999999998764 


Q ss_pred             --eEEEEEec-CCceEEEEeCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeC-C--EEEEEeCCCcEEEEE
Q 016224          183 --QCAGVINL-GGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN-D--LLFAGTQDGAILAWK  255 (393)
Q Consensus       183 --~~~~~~~~-~~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~-~--~l~~~~~dg~I~vwd  255 (393)
                        +.+..+.. ...+.++..++.+++++ .++.|++|| .......+..|...+.++.+.+ +  .|++++.|+.|++||
T Consensus        93 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d  171 (313)
T 3odt_A           93 GEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ  171 (313)
T ss_dssp             TSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             CCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe
Confidence              44555543 34566666667777765 888999999 3333347788999999999976 3  999999999999999


Q ss_pred             eccCCccccCceeecC-ceeeEEEEEEc-CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcC-CEEEEEeCC
Q 016224          256 FNVTTNCFEPAASLKG-HSLAVVSLVVG-ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD-QFLLSCSLD  332 (393)
Q Consensus       256 ~~~~~~~~~~~~~~~~-~~~~v~~l~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~l~s~s~d  332 (393)
                      ..      .....+.. |...+.+++++ ...+++++.|+.|++||+++++++..+..|...|.+++|++ ..|++++.|
T Consensus       172 ~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d  245 (313)
T 3odt_A          172 ND------KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGED  245 (313)
T ss_dssp             TT------EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETT
T ss_pred             cC------ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecC
Confidence            33      33445555 88889999886 33599999999999999999999999999999999999993 379999999


Q ss_pred             CcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          333 KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       333 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      +.|++||+.+++....+..+..  .+.+++|+|++.    +++++.||.|++||+.++++
T Consensus       246 g~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~----~~~~~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          246 RTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD----IIVGSSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             SEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC----EEEEETTSCEEEEESCGGGC
T ss_pred             CEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC----EEEEeCCCcEEEEeCCCCce
Confidence            9999999998887777766543  589999988765    66799999999999998754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.5e-34  Score=275.21  Aligned_cols=281  Identities=14%  Similarity=0.145  Sum_probs=212.3

Q ss_pred             ceeecceEEeeEecC---cEEEecCCCeEEEEECCCCc-EEEEEecCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECC
Q 016224          106 AVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCA  180 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~---~~~~g~~dg~i~vwd~~~~~-~~~~~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~  180 (393)
                      ..|...|+|++|+|.   .+++|+.||.|+|||+.++. .....+.+|.+.|++|+|+| ++++|+|++.||+|++||++
T Consensus       116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~  195 (435)
T 4e54_B          116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK  195 (435)
T ss_dssp             EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence            345668999999863   36689999999999998652 34556778999999999998 68999999999999999998


Q ss_pred             CCeEEEEEecCCc-----eEEEEeCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcE
Q 016224          181 SGQCAGVINLGGE-----VGCMISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAI  251 (393)
Q Consensus       181 ~~~~~~~~~~~~~-----~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I  251 (393)
                      ++...........     ...+.+++.+|+++ .++.|++||++......+..|...|.+++|+|+   +|++++.|+.|
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v  275 (435)
T 4e54_B          196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTV  275 (435)
T ss_dssp             SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBC
T ss_pred             CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCccee
Confidence            7655444433221     23455788888887 788999999988777788999999999999986   78899999999


Q ss_pred             EEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccc------eEEEEEc-
Q 016224          252 LAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSV------VMSLLCW-  322 (393)
Q Consensus       252 ~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~------v~~l~~~-  322 (393)
                      ++||++..... .......+|...|.+++|+  +++|++++.|+.|+|||+++++....+..|...      +....++ 
T Consensus       276 ~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (435)
T 4e54_B          276 KIWDLRQVRGK-ASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP  354 (435)
T ss_dssp             CEEETTTCCSS-SCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS
T ss_pred             eEEeccccccc-ceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcC
Confidence            99999876432 2233445789999999986  569999999999999999999888777665432      2233343 


Q ss_pred             -CCEEEEEe------------CCCcEEEEEcCCCcceEEEEeecCCccEEEE-EeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          323 -DQFLLSCS------------LDKTIKVWFATDSGNLEVTYTHNEEHGVLAL-CGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       323 -~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                       +.++++++            .++.|++||..+++.+..+.... ...+.++ +|+|++.   +|++|+ |+.|+||+++
T Consensus       355 ~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~s~~~fspdg~---~lasg~-d~~i~iW~~~  429 (435)
T 4e54_B          355 RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGISSLNEFNPMGD---TLASAM-GYHILIWSQQ  429 (435)
T ss_dssp             SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCCCEEEECTTSS---CEEEEC-SSEEEECCCC
T ss_pred             CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEEEEEEECCCCC---EEEEEc-CCcEEEEECC
Confidence             33444443            34679999998887766655332 2345555 5777655   788775 8899999999


Q ss_pred             ceee
Q 016224          389 SVII  392 (393)
Q Consensus       389 s~~l  392 (393)
                      +++.
T Consensus       430 ~gk~  433 (435)
T 4e54_B          430 EART  433 (435)
T ss_dssp             ----
T ss_pred             cCee
Confidence            8863

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.9e-33  Score=275.29  Aligned_cols=266  Identities=24%  Similarity=0.376  Sum_probs=226.2

Q ss_pred             ceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 016224          106 AVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ  183 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~  183 (393)
                      ..|..+|.+++|+++  .+++++.|+.|++||....  .+..+.+|...|.+++|+|++++|++++.|+.|++||. +++
T Consensus       300 ~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~  376 (577)
T 2ymu_A          300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQ  376 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCC
T ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCC
Confidence            346779999999987  3567999999999998654  56778999999999999999999999999999999996 566


Q ss_pred             EEEEEecC-CceEEE--EeCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEec
Q 016224          184 CAGVINLG-GEVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN  257 (393)
Q Consensus       184 ~~~~~~~~-~~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~  257 (393)
                      .+..+..+ ..+.++  .+++++|+++ .|+.|++||........+..|...|.+++|+|+  +|++++.|+.|++||..
T Consensus       377 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~  456 (577)
T 2ymu_A          377 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN  456 (577)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence            66666644 445444  3577777765 788999999766555588899999999999998  99999999999999964


Q ss_pred             cCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCC
Q 016224          258 VTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDK  333 (393)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg  333 (393)
                      .     +....+.+|...|.+++++  +++|++++.|+.|++||. +++++.++.+|...|++++|+  +++|++++.|+
T Consensus       457 ~-----~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg  530 (577)
T 2ymu_A          457 G-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK  530 (577)
T ss_dssp             S-----CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             C-----CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcC
Confidence            3     4566778899999999986  569999999999999995 688999999999999999998  67999999999


Q ss_pred             cEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          334 TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       334 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                      .|+|||. +++.+..+..|..  .|.+++|+|++.   +|+|++.|++|++||
T Consensus       531 ~v~lwd~-~~~~~~~~~~h~~--~v~~~~fs~dg~---~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          531 TVKLWNR-NGQLLQTLTGHSS--SVWGVAFSPDGQ---TIASASSDKTVKLWN  577 (577)
T ss_dssp             EEEEECT-TSCEEEEEECCSS--CEEEEEECTTSS---CEEEEETTSCEEEEC
T ss_pred             EEEEEeC-CCCEEEEEcCCCC--CEEEEEEcCCCC---EEEEEeCCCEEEEeC
Confidence            9999996 5666777776654  599999988765   899999999999997

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-34  Score=270.76  Aligned_cols=275  Identities=15%  Similarity=0.213  Sum_probs=218.5

Q ss_pred             ceeecceEEeeEec-C--cEEEecCCCeEEEEECCC---C--cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEE
Q 016224          106 AVIKTDILCRNWVQ-G--NCMYGEKCKFLHSWTVGD---G--FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW  177 (393)
Q Consensus       106 ~~~~~~i~c~~~~~-~--~~~~g~~dg~i~vwd~~~---~--~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iw  177 (393)
                      ..|...|+|++|++ +  .+++|+.||.|+|||+.+   +  .+....+ .|...|++++|+|++++|++++.||+|++|
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw  138 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVL  138 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence            45778999999998 5  466899999999999875   3  1223333 499999999999999999999999999999


Q ss_pred             ECC---CCeEEEEEe-------------cCCceEEEE----eCCCEEEEE-cCCeEEEEECCCCcee-eecC--CCCcEE
Q 016224          178 DCA---SGQCAGVIN-------------LGGEVGCMI----SEGPWIFIG-VTNFVKAWNTQTNTDL-SLSG--PVGQVY  233 (393)
Q Consensus       178 d~~---~~~~~~~~~-------------~~~~~~~~~----~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~--~~~~v~  233 (393)
                      |++   +++....+.             ....+.++.    +++.+++++ .|+.|++||+++++.+ .+..  |...|.
T Consensus       139 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~  218 (437)
T 3gre_A          139 KVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVS  218 (437)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEE
T ss_pred             EeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceE
Confidence            995   554444332             222233332    356677765 7899999999998877 5665  789999


Q ss_pred             EEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeec-CceeeEEEEEEcC------CEEEEecCCCcEEEeeCCCcc
Q 016224          234 AMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK-GHSLAVVSLVVGA------NKLYSGSMDNSIRVWNLETLQ  304 (393)
Q Consensus       234 ~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~~------~~l~sg~~dg~i~iwd~~~~~  304 (393)
                      +++|+|+  +|++++.||.|++||++..    +++..+. .|...|.++.+.+      .+|++++.|+.|++||+++++
T Consensus       219 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  294 (437)
T 3gre_A          219 SICIDEECCVLILGTTRGIIDIWDIRFN----VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH  294 (437)
T ss_dssp             EEEECTTSCEEEEEETTSCEEEEETTTT----EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEcCCc----cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence            9999987  9999999999999999875    4455554 6788999997653      389999999999999999999


Q ss_pred             eeeEecc--------------------------CccceEEEEEc-CCEEEEEeCCCcEEEEEcCCCcceEEEEeec----
Q 016224          305 CIQTLTE--------------------------HTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHN----  353 (393)
Q Consensus       305 ~~~~~~~--------------------------~~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----  353 (393)
                      ++..+.+                          |...|.+++++ +++|++++.|+.|++||+.+++....+..+.    
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  374 (437)
T 3gre_A          295 CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSD  374 (437)
T ss_dssp             EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCC
T ss_pred             EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCc
Confidence            8877764                          45567888888 5689999999999999999888776666431    


Q ss_pred             -------------------------------CCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          354 -------------------------------EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       354 -------------------------------~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                                                     +...|.++++.++. +..+|++|+.||.|+||+
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~-~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          375 VFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVD-ETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESS-SSEEEEEEETTSCEEEEC
T ss_pred             eEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccC-CceEEEEEcCCceEEEeC
Confidence                                           44568999999872 234999999999999995

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=9.7e-34  Score=262.85  Aligned_cols=282  Identities=12%  Similarity=0.134  Sum_probs=225.8

Q ss_pred             eeecceEEeeEecCc--EEEecCCCeEEEEECCCCcE--EEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224          107 VIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFK--LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       107 ~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~--~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      .|..+|+|++|++++  +++|+.|+.|++||+.++ +  .+..+.+|...|++++|+|++++|++++.||.|++||+.++
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~   84 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR   84 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETT-EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence            467799999999773  557889999999999887 5  88899999999999999999999999999999999999998


Q ss_pred             eEEEEEe---cCCceEEEE--eCCCEEEEE-cCCeEEEEECCCCce----e-eecCCCCcEEEEEEeCC--EEEEEeCCC
Q 016224          183 QCAGVIN---LGGEVGCMI--SEGPWIFIG-VTNFVKAWNTQTNTD----L-SLSGPVGQVYAMAVGND--LLFAGTQDG  249 (393)
Q Consensus       183 ~~~~~~~---~~~~~~~~~--~~~~~l~~~-~~~~i~v~d~~~~~~----~-~~~~~~~~v~~l~~~~~--~l~~~~~dg  249 (393)
                      +....+.   +...+.++.  +++.+++++ .++.|++||+..+..    . ....|...|.+++|+++  +|++++.|+
T Consensus        85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  164 (372)
T 1k8k_C           85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF  164 (372)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence            8665543   334454443  577777776 788999999998762    2 33678899999999987  999999999


Q ss_pred             cEEEEEeccCC--------------ccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCc
Q 016224          250 AILAWKFNVTT--------------NCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHT  313 (393)
Q Consensus       250 ~I~vwd~~~~~--------------~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  313 (393)
                      .|++||++...              ...+....+..|...|.+++++  +++|++++.|+.|++||+++++++..+..|.
T Consensus       165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  244 (372)
T 1k8k_C          165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET  244 (372)
T ss_dssp             CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred             CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC
Confidence            99999975321              0124556677889999999995  5699999999999999999999999999999


Q ss_pred             cceEEEEEc--CCEEEEEeCCCcEEEEEcCC--Ccc-----------------------------e---------EEEEe
Q 016224          314 SVVMSLLCW--DQFLLSCSLDKTIKVWFATD--SGN-----------------------------L---------EVTYT  351 (393)
Q Consensus       314 ~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~--~~~-----------------------------~---------~~~~~  351 (393)
                      ..+.+++|+  +.+|+++ .|+.|++|++.+  +.-                             .         ..+. 
T Consensus       245 ~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  322 (372)
T 1k8k_C          245 LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD-  322 (372)
T ss_dssp             CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS-
T ss_pred             CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccc-
Confidence            999999998  4556655 999999999977  310                             0         1111 


Q ss_pred             ecCCccEEEEEeeeCC-CCCcEEEEEeCCCeEEEEeCCcee
Q 016224          352 HNEEHGVLALCGMPDS-EGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       352 ~~~~~~v~~~~~~~~~-~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      ..+...|.+++|.+.. .+..+|++++.||.|++|++.+++
T Consensus       323 ~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          323 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence            1344569999877543 112499999999999999997653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5e-34  Score=257.59  Aligned_cols=243  Identities=18%  Similarity=0.201  Sum_probs=198.4

Q ss_pred             ceeecceEEeeEecC--cEEEecCCCeEEEEECCCC-cEEEEEecCCcCCEEEEEecC--CCCEEEEEeCCCcEEEEECC
Q 016224          106 AVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPS--GSDKLYSGSKDETVRVWDCA  180 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~-~~~~~~l~~h~~~I~~i~~s~--~~~~l~s~s~dg~v~iwd~~  180 (393)
                      ..|...|.+++|+++  .+++|+.|++|+|||+.++ .+++.++.+|..+|++++|++  ++++|+||+.|++|+|||++
T Consensus         6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~   85 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE   85 (297)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBS
T ss_pred             cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcC
Confidence            357779999999976  4668999999999999743 367789999999999999986  38999999999999999998


Q ss_pred             CCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEEe
Q 016224          181 SGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKF  256 (393)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~----~l~~~~~dg~I~vwd~  256 (393)
                      +++...                                   ...+..|...|.+++|+|+    +|++++.|+.|++||+
T Consensus        86 ~~~~~~-----------------------------------~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~  130 (297)
T 2pm7_B           86 NGRWSQ-----------------------------------IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEF  130 (297)
T ss_dssp             SSCBCC-----------------------------------CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEB
T ss_pred             CCceEE-----------------------------------EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEe
Confidence            764210                                   1134568889999999874    8999999999999999


Q ss_pred             ccCCccccCceeecCceeeEEEEEEcC---------------CEEEEecCCCcEEEeeCCCcc----eeeEeccCccceE
Q 016224          257 NVTTNCFEPAASLKGHSLAVVSLVVGA---------------NKLYSGSMDNSIRVWNLETLQ----CIQTLTEHTSVVM  317 (393)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~l~~~~---------------~~l~sg~~dg~i~iwd~~~~~----~~~~~~~~~~~v~  317 (393)
                      +....  .....+.+|...|.+++|++               ++|++|+.|++|++||+++++    ++.++.+|...|.
T Consensus       131 ~~~~~--~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~  208 (297)
T 2pm7_B          131 KENGT--TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR  208 (297)
T ss_dssp             CSSSC--BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred             cCCCc--eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceE
Confidence            87532  12355678999999999975               489999999999999998765    6678899999999


Q ss_pred             EEEEcC-----CEEEEEeCCCcEEEEEcCCCcc--eEEEE-eecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          318 SLLCWD-----QFLLSCSLDKTIKVWFATDSGN--LEVTY-THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       318 ~l~~~~-----~~l~s~s~dg~i~iwd~~~~~~--~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      +++|++     .+|++++.|++|+|||+.....  ..... .......+.+++|+|++.   +|++++.|+.|+||++.
T Consensus       209 ~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          209 DVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN---VLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC---CEEEEETTSCEEEEEEC
T ss_pred             EEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC---EEEEEcCCCcEEEEEEC
Confidence            999984     5899999999999999976432  11121 123345699999998766   89999999999999976

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=258.19  Aligned_cols=243  Identities=21%  Similarity=0.296  Sum_probs=203.8

Q ss_pred             EEEEEecCCcCCEEEEEecCC----CCEEEEEeCCCcEEEEECCCCeEEE--EEecC-CceEEEE--eCCCEEEEE-cCC
Q 016224          141 KLLTQLEGHQKVVSGITLPSG----SDKLYSGSKDETVRVWDCASGQCAG--VINLG-GEVGCMI--SEGPWIFIG-VTN  210 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~----~~~l~s~s~dg~v~iwd~~~~~~~~--~~~~~-~~~~~~~--~~~~~l~~~-~~~  210 (393)
                      .+.+.+++|.+.|++++|+++    +.+|+||+.|++|+|||+.+++...  .+..+ ..+.++.  +++.+++++ .|+
T Consensus        23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~  102 (321)
T 3ow8_A           23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA  102 (321)
T ss_dssp             EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence            445677899999999999874    6799999999999999998876543  34433 3344433  567777765 899


Q ss_pred             eEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCE
Q 016224          211 FVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANK  285 (393)
Q Consensus       211 ~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~  285 (393)
                      .|++||+.+++.+ .+..+...+.+++|+|+  +|++++.|+.|++||++..    +....+..|...+.+++++  +++
T Consensus       103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~----~~~~~~~~~~~~v~~~~~spdg~~  178 (321)
T 3ow8_A          103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG----KKEYSLDTRGKFILSIAYSPDGKY  178 (321)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC----SEEEEEECSSSCEEEEEECTTSSE
T ss_pred             cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC----ceeEEecCCCceEEEEEECCCCCE
Confidence            9999999998877 67788889999999998  9999999999999999887    4455667788889999886  569


Q ss_pred             EEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEe
Q 016224          286 LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCG  363 (393)
Q Consensus       286 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  363 (393)
                      |++++.|+.|++||+++++++.++.+|...|.+++|+  +++|++++.|+.|+|||+++......+..|..  .+.+++|
T Consensus       179 lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~  256 (321)
T 3ow8_A          179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS--WVLNVAF  256 (321)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS--CEEEEEE
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC--ceEEEEE
Confidence            9999999999999999999999999999999999998  67999999999999999998877766666554  4999999


Q ss_pred             eeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          364 MPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       364 ~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      +|++.   +|++++.|++|++||+.++++
T Consensus       257 sp~~~---~l~s~s~D~~v~iwd~~~~~~  282 (321)
T 3ow8_A          257 CPDDT---HFVSSSSDKSVKVWDVGTRTC  282 (321)
T ss_dssp             CTTSS---EEEEEETTSCEEEEETTTTEE
T ss_pred             CCCCC---EEEEEeCCCcEEEEeCCCCEE
Confidence            88766   999999999999999988754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2e-34  Score=269.33  Aligned_cols=254  Identities=21%  Similarity=0.289  Sum_probs=212.3

Q ss_pred             eEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc-e--EEEEeCCCEEEE
Q 016224          130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-V--GCMISEGPWIFI  206 (393)
Q Consensus       130 ~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-~--~~~~~~~~~l~~  206 (393)
                      .+..|+..+. ...+++++|.+.|++++|+|++++|+||+.|++|+|||+.+++....+..+.. +  ..+.++++++++
T Consensus        47 ~~~~~~~~~~-~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las  125 (380)
T 3iz6_a           47 TAVSFNPTDL-VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVAC  125 (380)
T ss_dssp             GCCCCCCCCC-EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEE
T ss_pred             ccccccccee-EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEE
Confidence            3445776665 88899999999999999999999999999999999999999999888876543 2  345578888887


Q ss_pred             E-cCCeEEEEECCCCc--------eeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceee-----
Q 016224          207 G-VTNFVKAWNTQTNT--------DLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASL-----  269 (393)
Q Consensus       207 ~-~~~~i~v~d~~~~~--------~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~-----  269 (393)
                      + .|+.+++|++.+..        ...+.+|...|.++.|.|+   .|++++.|++|++||+.++..    +..+     
T Consensus       126 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~----~~~~~~~~~  201 (380)
T 3iz6_a          126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR----ISIFGSEFP  201 (380)
T ss_dssp             CCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE----EEEECCCSS
T ss_pred             eeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE----EEEeecccC
Confidence            6 88999999987532        1256789999999999875   799999999999999988742    2222     


Q ss_pred             cCceeeEEEEEEc---CCEEEEecCCCcEEEeeCC-CcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCC
Q 016224          270 KGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLE-TLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDS  343 (393)
Q Consensus       270 ~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~  343 (393)
                      .+|...|.+++++   +++|++|+.|++|++||++ ..+.+..+.+|...|.+++|+  +++|++++.|++|++||++++
T Consensus       202 ~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~  281 (380)
T 3iz6_a          202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG  281 (380)
T ss_dssp             SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred             CCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence            5788999999984   5799999999999999998 567889999999999999998  679999999999999999988


Q ss_pred             cceEEEEeecCC-----ccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          344 GNLEVTYTHNEE-----HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       344 ~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      ..+..+..+...     ..+.+++|+|++.   +|++|+.||.|++||+.+++
T Consensus       282 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---~l~~g~~dg~i~vwd~~~~~  331 (380)
T 3iz6_a          282 HQLQVYNREPDRNDNELPIVTSVAFSISGR---LLFAGYSNGDCYVWDTLLAE  331 (380)
T ss_dssp             EEEEEECCCCSSSCCSSCSCSEEEECSSSS---EEEEECTTSCEEEEETTTCC
T ss_pred             cEEEEecccccccccccCceEEEEECCCCC---EEEEEECCCCEEEEECCCCc
Confidence            777665543221     2377899988766   99999999999999987664

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.5e-33  Score=257.46  Aligned_cols=277  Identities=17%  Similarity=0.234  Sum_probs=215.8

Q ss_pred             ceeecceEEeeEecCc--EE-EecC---CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCC---CCEEEEEeCCCcEEE
Q 016224          106 AVIKTDILCRNWVQGN--CM-YGEK---CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSG---SDKLYSGSKDETVRV  176 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~~--~~-~g~~---dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~---~~~l~s~s~dg~v~i  176 (393)
                      ..|...|.+++|++++  ++ +|+.   |+.|++||+.++........+|...|++++|+|+   +++|++++.||.|++
T Consensus        15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i   94 (357)
T 3i2n_A           15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHI   94 (357)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEE
T ss_pred             cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEE
Confidence            3477899999999864  33 4555   9999999999873333334479999999999998   699999999999999


Q ss_pred             EECCCCe-EEEEEecC-CceEEE--------EeCCCEEEEE-cCCeEEEEECCCCc-ee-eecCCCC----cEEEEE---
Q 016224          177 WDCASGQ-CAGVINLG-GEVGCM--------ISEGPWIFIG-VTNFVKAWNTQTNT-DL-SLSGPVG----QVYAMA---  236 (393)
Q Consensus       177 wd~~~~~-~~~~~~~~-~~~~~~--------~~~~~~l~~~-~~~~i~v~d~~~~~-~~-~~~~~~~----~v~~l~---  236 (393)
                      ||+.+++ .+..+..+ ..+.++        .+++.+++++ .|+.|++||+.++. .. .+..+..    .+.++.   
T Consensus        95 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  174 (357)
T 3i2n_A           95 WNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGN  174 (357)
T ss_dssp             ECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEEC
T ss_pred             EeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEe
Confidence            9999887 77777654 445444        2467777765 78899999999876 33 4544443    899998   


Q ss_pred             -EeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC-----CEEEEecCCCcEEEeeCCCcceeeE
Q 016224          237 -VGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA-----NKLYSGSMDNSIRVWNLETLQCIQT  308 (393)
Q Consensus       237 -~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-----~~l~sg~~dg~i~iwd~~~~~~~~~  308 (393)
                       |+++  +|++++.|+.|++||++...    . .....|...|.++++++     ++|++++.|+.|++||+++++.+..
T Consensus       175 ~~~~~~~~l~~~~~d~~i~i~d~~~~~----~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  249 (357)
T 3i2n_A          175 AYNQEERVVCAGYDNGDIKLFDLRNMA----L-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG  249 (357)
T ss_dssp             CCC-CCCEEEEEETTSEEEEEETTTTE----E-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred             ccCCCCCEEEEEccCCeEEEEECccCc----e-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence             4555  99999999999999998863    2 33355778899999864     6899999999999999998877666


Q ss_pred             ec-----cCccceEEEEEcC--C-EEEEEeCCCcEEEEEcCCCcc-------------------eEEEEeecCCccEEEE
Q 016224          309 LT-----EHTSVVMSLLCWD--Q-FLLSCSLDKTIKVWFATDSGN-------------------LEVTYTHNEEHGVLAL  361 (393)
Q Consensus       309 ~~-----~~~~~v~~l~~~~--~-~l~s~s~dg~i~iwd~~~~~~-------------------~~~~~~~~~~~~v~~~  361 (393)
                      +.     .|...|.++.|++  . +|++++.||.|++||++....                   +..+..|  ...+.++
T Consensus       250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~v~~~  327 (357)
T 3i2n_A          250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS--TQPISSL  327 (357)
T ss_dssp             EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC--SSCEEEE
T ss_pred             eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC--CCCeeEE
Confidence            65     8999999999984  3 799999999999999975432                   2333333  4569999


Q ss_pred             EeeeCCCCCcEEE-EEeCCCeEEEEeCCceee
Q 016224          362 CGMPDSEGKPVLL-CSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       362 ~~~~~~~~~~~l~-s~s~dg~I~iwd~~s~~l  392 (393)
                      +|+|++.   +|+ +++.||.|++||+.+.++
T Consensus       328 ~~s~~~~---~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          328 DWSPDKR---GLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             EECSSST---TEEEEEETTSEEEEEEECC---
T ss_pred             EEcCCCC---eEEEEecCCCcEEEEECCCccc
Confidence            9998765   666 899999999999998765

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.1e-33  Score=259.04  Aligned_cols=238  Identities=16%  Similarity=0.227  Sum_probs=190.2

Q ss_pred             cceeecceEEeeEecC-cEEEecCCCeEEEEECCCCcEEE----EEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 016224          105 RAVIKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLL----TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC  179 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~-~~~~g~~dg~i~vwd~~~~~~~~----~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~  179 (393)
                      ...|...|++++|+++ .+++++.||+|+|||+.++ +..    ....+|...|++|+|+|++++|++++.|++|++||+
T Consensus        90 ~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~-~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~  168 (357)
T 4g56_B           90 GVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEK-ESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL  168 (357)
T ss_dssp             EEECSSCEEEEEEETTTEEEEEETTSCEEEC---------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred             cCCCCCCEEEEEEcCCCCEEEEECCCEEEEeecccc-ceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            3457778999999987 5667999999999999876 332    345589999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCC-ceEEEE--eCC--CEEEEEcCCeEEEEECCCCcee---eecCCCCcEEEEEEeCC---EEEEEeCC
Q 016224          180 ASGQCAGVINLGG-EVGCMI--SEG--PWIFIGVTNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGND---LLFAGTQD  248 (393)
Q Consensus       180 ~~~~~~~~~~~~~-~~~~~~--~~~--~~l~~~~~~~i~v~d~~~~~~~---~~~~~~~~v~~l~~~~~---~l~~~~~d  248 (393)
                      .+++.+..+..+. .+.++.  +++  .++.++.|+.|++||+++++..   ....+...+.+++|+|+   +|++|+.|
T Consensus       169 ~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d  248 (357)
T 4g56_B          169 SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET  248 (357)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS
T ss_pred             CCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecc
Confidence            9999999987654 454443  343  3445568999999999988765   34457788999999986   89999999


Q ss_pred             CcEEEEEeccCCccccCceeecCceeeEEEEEEcC---CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc---
Q 016224          249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---  322 (393)
Q Consensus       249 g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~---  322 (393)
                      +.|++||+++.    +....+..|...|.+++|++   .+|++++.|++|+|||+++++++..+ +|...|++++|+   
T Consensus       249 ~~i~~wd~~~~----~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d  323 (357)
T 4g56_B          249 GNVSLVNIKNP----DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLD  323 (357)
T ss_dssp             SCEEEEESSCG----GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSS
T ss_pred             cceeEEECCCC----cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCC
Confidence            99999999886    56778889999999999963   47999999999999999999887765 799999999997   


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcceEE
Q 016224          323 DQFLLSCSLDKTIKVWFATDSGNLEV  348 (393)
Q Consensus       323 ~~~l~s~s~dg~i~iwd~~~~~~~~~  348 (393)
                      +.+|++++.|++|++|++.+..+...
T Consensus       324 ~~~l~s~s~Dg~v~iW~~~~~~~~~~  349 (357)
T 4g56_B          324 HSKFTTVGWDHKVLHHHLPSEGRTEN  349 (357)
T ss_dssp             TTEEEEEETTSCEEEEECC-------
T ss_pred             CCEEEEEcCCCeEEEEECCCCCcccc
Confidence            46999999999999999976544433

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.5e-33  Score=261.01  Aligned_cols=277  Identities=19%  Similarity=0.322  Sum_probs=226.1

Q ss_pred             cceeecceEEeeEecC---cEEEecCCCeEEEEEC----CCCcE-----EEEEecC----------CcCCEEEEEecCCC
Q 016224          105 RAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTV----GDGFK-----LLTQLEG----------HQKVVSGITLPSGS  162 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~---~~~~g~~dg~i~vwd~----~~~~~-----~~~~l~~----------h~~~I~~i~~s~~~  162 (393)
                      ...|..+|.|++|+++   .+++|+.|+.|++|++    .++..     ....+..          |...|++++|+|++
T Consensus        41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  120 (425)
T 1r5m_A           41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG  120 (425)
T ss_dssp             EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred             eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence            3445579999999987   3567999999999999    87731     4555554          78899999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEecC-CceEEEE--eCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCc------
Q 016224          163 DKLYSGSKDETVRVWDCASGQCAGVINLG-GEVGCMI--SEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQ------  231 (393)
Q Consensus       163 ~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~--~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~------  231 (393)
                      ++|++++.||.|++|| .+++.+..+..+ ..+.++.  +++.+++++ .++.|++||+.+++.. .+..+...      
T Consensus       121 ~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  199 (425)
T 1r5m_A          121 NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA  199 (425)
T ss_dssp             SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred             CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence            9999999999999999 567777777644 4454443  577777665 7899999999998876 55555555      


Q ss_pred             ---------EEEEEEeCC-EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEee
Q 016224          232 ---------VYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWN  299 (393)
Q Consensus       232 ---------v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd  299 (393)
                               +.++.|+++ .+++++.++.|++||+...    +....+..|...|.+++++  +++|++++.|+.|++||
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  275 (425)
T 1r5m_A          200 ENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK----TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH  275 (425)
T ss_dssp             ------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS----SCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred             ccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC----ceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence                     888999888 9999999999999999886    5567777899999999986  56899999999999999


Q ss_pred             CCCcceeeEeccCccceEEEEEcCC-EEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeC
Q 016224          300 LETLQCIQTLTEHTSVVMSLLCWDQ-FLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN  378 (393)
Q Consensus       300 ~~~~~~~~~~~~~~~~v~~l~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~  378 (393)
                      +++++.+..+..|...|.++.|+++ +|++++.|+.|++||+.+.+.+..+..+.  ..+.+++|+|++.   +|++++.
T Consensus       276 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~s~~~~---~l~~~~~  350 (425)
T 1r5m_A          276 GGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDG--VPIFAGRISQDGQ---KYAVAFM  350 (425)
T ss_dssp             SSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTT--CCEEEEEECTTSS---EEEEEET
T ss_pred             CCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCC--ccEEEEEEcCCCC---EEEEEEC
Confidence            9999999999999999999999843 99999999999999998887776666544  3589999988765   9999999


Q ss_pred             CCeEEEEeCCcee
Q 016224          379 DNSVRFYDLPSVI  391 (393)
Q Consensus       379 dg~I~iwd~~s~~  391 (393)
                      ||.|++||+.+++
T Consensus       351 dg~i~i~~~~~~~  363 (425)
T 1r5m_A          351 DGQVNVYDLKKLN  363 (425)
T ss_dssp             TSCEEEEECHHHH
T ss_pred             CCeEEEEECCCCc
Confidence            9999999998654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.1e-32  Score=247.31  Aligned_cols=248  Identities=22%  Similarity=0.373  Sum_probs=209.0

Q ss_pred             CcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-ceEEE--EeCCCEEEEE-cCCeEEE
Q 016224          139 GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG-EVGCM--ISEGPWIFIG-VTNFVKA  214 (393)
Q Consensus       139 ~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~~~~--~~~~~~l~~~-~~~~i~v  214 (393)
                      .+.+..++.+|...|++++|+|++++|++++.||.|++|++.+++....+..+. .+..+  .+++++++++ .|+.|++
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v   91 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI   91 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence            347788999999999999999999999999999999999999999888887553 34433  3678887765 8889999


Q ss_pred             EECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEe
Q 016224          215 WNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSG  289 (393)
Q Consensus       215 ~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg  289 (393)
                      ||+.+++.+ .+..|...|.++.|+++  +|++++.|+.|++||+++.    +....+..|...|.++.++  +++|+++
T Consensus        92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~  167 (312)
T 4ery_A           92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVSS  167 (312)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----EEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence            999998876 77889999999999987  9999999999999999876    5567778899999999986  5699999


Q ss_pred             cCCCcEEEeeCCCcceeeEec-cCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeC
Q 016224          290 SMDNSIRVWNLETLQCIQTLT-EHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD  366 (393)
Q Consensus       290 ~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  366 (393)
                      +.|+.|++||+++++.+..+. .+...+..++|+  +++|++++.|+.|++||+++++.+..+..+..........+.+.
T Consensus       168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (312)
T 4ery_A          168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT  247 (312)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred             eCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence            999999999999998887764 456778899998  67999999999999999998887777766655443333444432


Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          367 SEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       367 ~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                        ++.+|++++.||.|++||+.++++
T Consensus       248 --~~~~l~sg~~dg~i~vwd~~~~~~  271 (312)
T 4ery_A          248 --GGKWIVSGSEDNLVYIWNLQTKEI  271 (312)
T ss_dssp             --SSCEEEECCTTSCEEEEETTTCCE
T ss_pred             --CCcEEEEECCCCEEEEEECCCchh
Confidence              445999999999999999998754

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=258.96  Aligned_cols=247  Identities=17%  Similarity=0.229  Sum_probs=192.7

Q ss_pred             EEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECC------------CCeEEEEEecCCceEEE--
Q 016224          132 HSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA------------SGQCAGVINLGGEVGCM--  197 (393)
Q Consensus       132 ~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~------------~~~~~~~~~~~~~~~~~--  197 (393)
                      +.|++...     ....|...|.+++|+|||++|++++ |+++++||..            .+.+...+.....+.++  
T Consensus        17 r~w~~~~~-----~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   90 (344)
T 4gqb_B           17 REWNLPPN-----APACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW   90 (344)
T ss_dssp             ------CC-----SCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEE
T ss_pred             cccCCCCC-----CcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEE
Confidence            56776544     1245778899999999999999888 7788888731            11222333334444443  


Q ss_pred             EeCCCEEEEEcCCeEEEEECCCCcee-----eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeec
Q 016224          198 ISEGPWIFIGVTNFVKAWNTQTNTDL-----SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK  270 (393)
Q Consensus       198 ~~~~~~l~~~~~~~i~v~d~~~~~~~-----~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~  270 (393)
                      .+++.+++++.|+.|++||+.+++..     ...+|...|.+++|+++  +|++++.|+.|++||++++    +.+..+.
T Consensus        91 s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~----~~~~~~~  166 (344)
T 4gqb_B           91 VGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ----VVLSSYR  166 (344)
T ss_dssp             ETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEEC
T ss_pred             eCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC----cEEEEEc
Confidence            35666666679999999999988644     34589999999999998  9999999999999999887    6678889


Q ss_pred             CceeeEEEEEEcC---CEEEEecCCCcEEEeeCCCcceeeEec--cCccceEEEEEc---CCEEEEEeCCCcEEEEEcCC
Q 016224          271 GHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLT--EHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATD  342 (393)
Q Consensus       271 ~~~~~v~~l~~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~  342 (393)
                      +|...|.+++|++   .+|++++.|++|++||+++++++..+.  .|...+.+++|+   +++|++|+.|++|+|||+++
T Consensus       167 ~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~  246 (344)
T 4gqb_B          167 AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS  246 (344)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC
T ss_pred             CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC
Confidence            9999999999963   478999999999999999999988875  455678999997   45899999999999999999


Q ss_pred             CcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          343 SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       343 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      ++.+..+..|..  .|.+++|+|++.  ++|++++.|++|+|||+.++++
T Consensus       247 ~~~~~~~~~h~~--~v~~v~fsp~g~--~~lasgs~D~~i~vwd~~~~~~  292 (344)
T 4gqb_B          247 TSCVLSSAVHSQ--CVTGLVFSPHSV--PFLASLSEDCSLAVLDSSLSEL  292 (344)
T ss_dssp             --CCEEEECCSS--CEEEEEECSSSS--CCEEEEETTSCEEEECTTCCEE
T ss_pred             CcEEEEEcCCCC--CEEEEEEccCCC--eEEEEEeCCCeEEEEECCCCcE
Confidence            888888877665  499999998753  3899999999999999998875

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.9e-32  Score=267.22  Aligned_cols=271  Identities=23%  Similarity=0.348  Sum_probs=227.3

Q ss_pred             cceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224          105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      ...|...|.++.|++++  +++++.|+.|++||...  +.+..+.+|...|.+++|+|++++|++++.|++|++||+...
T Consensus       258 ~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~  335 (577)
T 2ymu_A          258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ  335 (577)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC
T ss_pred             EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence            34467799999999774  66799999999999754  677889999999999999999999999999999999998765


Q ss_pred             eEEEEEecCCceEEE--EeCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEec
Q 016224          183 QCAGVINLGGEVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN  257 (393)
Q Consensus       183 ~~~~~~~~~~~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~  257 (393)
                      .......+...+.++  .+++++++++ .++.|++|+........+..|...|.+++|+|+  +|++++.|+.|++||..
T Consensus       336 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~  415 (577)
T 2ymu_A          336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN  415 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence            543333334445443  3678888876 778999999766555588899999999999998  89999999999999954


Q ss_pred             cCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCC
Q 016224          258 VTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDK  333 (393)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg  333 (393)
                      .     +....+.+|...|.+++++  +.+|++++.|+.|++||. +++.+..+.+|...|.+++|+  +++|++++.|+
T Consensus       416 ~-----~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~  489 (577)
T 2ymu_A          416 G-----QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK  489 (577)
T ss_dssp             C-----CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTS
T ss_pred             C-----CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            3     4567788899999999986  569999999999999996 578889999999999999998  67999999999


Q ss_pred             cEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          334 TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       334 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      .|++||. +++.+..+..|..  .+.+++|+|++.   +|++++.||.|++||+..
T Consensus       490 ~i~iw~~-~~~~~~~~~~h~~--~v~~l~~s~dg~---~l~s~~~dg~v~lwd~~~  539 (577)
T 2ymu_A          490 TVKLWNR-NGQLLQTLTGHSS--SVRGVAFSPDGQ---TIASASDDKTVKLWNRNG  539 (577)
T ss_dssp             EEEEEET-TSCEEEEEECCSS--CEEEEEECTTSS---CEEEEETTSEEEEECTTS
T ss_pred             EEEEEcC-CCCEEEEEeCCCC--CEEEEEEcCCCC---EEEEEECcCEEEEEeCCC
Confidence            9999996 5666676666654  499999988765   899999999999999753

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-34  Score=271.25  Aligned_cols=279  Identities=15%  Similarity=0.199  Sum_probs=225.7

Q ss_pred             ceeecceEEeeEecC--cEEEecCCCeEEEEECCC---CcEEEEEecCCcCCEEEEEecCC-CCEEEEEeCCCcEEEEEC
Q 016224          106 AVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGD---GFKLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDC  179 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~---~~~~~~~l~~h~~~I~~i~~s~~-~~~l~s~s~dg~v~iwd~  179 (393)
                      ..|...|.|++|+++  .+++|+.|+.|++||+.+   +.+.+..+.+|...|++++|+|+ +++|++++.|+.|++||+
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  143 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM  143 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence            346779999999977  366789999999999987   33688899999999999999998 899999999999999999


Q ss_pred             CCCe------EEEEE----ecCCceEEE--EeC-CCEEEEE-cCCeEEEEECCCCcee-eecCC------CCcEEEEEEe
Q 016224          180 ASGQ------CAGVI----NLGGEVGCM--ISE-GPWIFIG-VTNFVKAWNTQTNTDL-SLSGP------VGQVYAMAVG  238 (393)
Q Consensus       180 ~~~~------~~~~~----~~~~~~~~~--~~~-~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~------~~~v~~l~~~  238 (393)
                      .+++      ....+    .+...+.++  .++ +.+++++ .++.|++||+++++.. .+..+      ...|.+++|+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  223 (416)
T 2pm9_A          144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH  223 (416)
T ss_dssp             TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred             CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence            9876      33222    122334333  345 5677775 7889999999998876 44444      7889999999


Q ss_pred             CC---EEEEEeCCC---cEEEEEeccCCccccCceeec-CceeeEEEEEEc---CCEEEEecCCCcEEEeeCCCcceeeE
Q 016224          239 ND---LLFAGTQDG---AILAWKFNVTTNCFEPAASLK-GHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQCIQT  308 (393)
Q Consensus       239 ~~---~l~~~~~dg---~I~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~  308 (393)
                      |+   +|++++.|+   .|++||++...   .+...+. +|...|.+++|+   +++|++++.|+.|++||+++++++..
T Consensus       224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~  300 (416)
T 2pm9_A          224 PKNSTRVATATGSDNDPSILIWDLRNAN---TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQ  300 (416)
T ss_dssp             SSCTTEEEEEECCSSSCCCCEEETTSTT---SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEE
T ss_pred             CCCCCEEEEEECCCCCceEEEEeCCCCC---CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcccee
Confidence            86   899999999   99999998763   3455666 799999999995   46899999999999999999999999


Q ss_pred             eccCccceEEEEEc--C-CEEEEEeCCCcEEEEEcCCCcceEEE--------------Eeec------------------
Q 016224          309 LTEHTSVVMSLLCW--D-QFLLSCSLDKTIKVWFATDSGNLEVT--------------YTHN------------------  353 (393)
Q Consensus       309 ~~~~~~~v~~l~~~--~-~~l~s~s~dg~i~iwd~~~~~~~~~~--------------~~~~------------------  353 (393)
                      +..|...|.+++|+  + .+|++++.|+.|+|||+.+.......              ..+.                  
T Consensus       301 ~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (416)
T 2pm9_A          301 FPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPT  380 (416)
T ss_dssp             EECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCS
T ss_pred             ecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCc
Confidence            99999999999998  3 69999999999999999865532211              0000                  


Q ss_pred             -CCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          354 -EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       354 -~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                       ....+..++|+|++.   +|++++.|+.|+||++.+.
T Consensus       381 ~~~~~~~~~~~s~dg~---~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          381 WYGEPSPAAHWAFGGK---LVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             TTCCCSCCCEEETTTE---EECBCTTSSCBCCBCCCCC
T ss_pred             cccCCccceEEeeCCe---EEEEeCCCCeEEEEEeccC
Confidence             223455788888765   9999999999999999874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=9.6e-33  Score=255.24  Aligned_cols=280  Identities=15%  Similarity=0.231  Sum_probs=228.5

Q ss_pred             cccceeecceEEeeEecC-----cEEEecCCCeEEEEECCC-CcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEE
Q 016224          103 NNRAVIKTDILCRNWVQG-----NCMYGEKCKFLHSWTVGD-GFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRV  176 (393)
Q Consensus       103 ~~~~~~~~~i~c~~~~~~-----~~~~g~~dg~i~vwd~~~-~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~i  176 (393)
                      .....|...|+|++|+++     .+++|+.||.|++||+.+ +......+.+|...|++++|+|++++|++++.||.|++
T Consensus        33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i  112 (368)
T 3mmy_A           33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM  112 (368)
T ss_dssp             ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence            344567889999999986     356799999999999997 54555889999999999999999999999999999999


Q ss_pred             EECCCCeEEEEEecCCceEEEE----eCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCCcE
Q 016224          177 WDCASGQCAGVINLGGEVGCMI----SEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAI  251 (393)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I  251 (393)
                      ||+.+++.+....+...+.++.    +++.+++++ .|+.|++||+++++.+........+.++.+.++.+++++.++.+
T Consensus       113 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  192 (368)
T 3mmy_A          113 WDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGL  192 (368)
T ss_dssp             EETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCE
T ss_pred             EEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcE
Confidence            9999999988887777776654    356666654 78999999999988775555556889999999999999999999


Q ss_pred             EEEEeccCCccccCceeecCceeeEEEEEEcCCE----EEEecCCCcEEEeeCCCc---ceeeEeccCcc----------
Q 016224          252 LAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK----LYSGSMDNSIRVWNLETL---QCIQTLTEHTS----------  314 (393)
Q Consensus       252 ~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~----l~sg~~dg~i~iwd~~~~---~~~~~~~~~~~----------  314 (393)
                      .+|+++..............+...+.++..+...    +++++.|+.|++||++..   +.+..+..|..          
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (368)
T 3mmy_A          193 IVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQD  272 (368)
T ss_dssp             EEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEE
T ss_pred             EEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccccc
Confidence            9999987654333333344456666666665543    999999999999999987   66788888877          


Q ss_pred             --ceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          315 --VVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       315 --~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                        .|.+++|+  +++|++++.||.|++||+.+++.+..+..|.  ..+.+++|+|++.   +|++++.|+..+.|++
T Consensus       273 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~g~---~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          273 IYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLD--QPISACCFNHNGN---IFAYASSYDWSKGHEF  344 (368)
T ss_dssp             ECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS--SCEEEEEECTTSS---CEEEEECCCSTTCGGG
T ss_pred             ccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCC--CCceEEEECCCCC---eEEEEecccccccccc
Confidence              79999998  5699999999999999999887776666554  4599999988766   8999999886555554

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.4e-32  Score=256.37  Aligned_cols=281  Identities=15%  Similarity=0.169  Sum_probs=221.6

Q ss_pred             ceeecceEEeeEec-C--cEEEecCCCeEEEEECCCCcEEEEEe-------------cCCcCCEEEEEecC-CCCEEEEE
Q 016224          106 AVIKTDILCRNWVQ-G--NCMYGEKCKFLHSWTVGDGFKLLTQL-------------EGHQKVVSGITLPS-GSDKLYSG  168 (393)
Q Consensus       106 ~~~~~~i~c~~~~~-~--~~~~g~~dg~i~vwd~~~~~~~~~~l-------------~~h~~~I~~i~~s~-~~~~l~s~  168 (393)
                      ..|...|+|++|++ +  .+++|+.||.|++||+.++ +....+             .+|...|++++|+| ++++|+++
T Consensus        40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~  118 (408)
T 4a11_B           40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENS-SRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS  118 (408)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCC-SSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred             eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCC-cccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence            34778999999998 4  4668999999999999876 222222             36999999999999 78899999


Q ss_pred             eCCCcEEEEECCCCeEEEEEecCCceEEEE--e---CCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC-
Q 016224          169 SKDETVRVWDCASGQCAGVINLGGEVGCMI--S---EGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-  240 (393)
Q Consensus       169 s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~---~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~-  240 (393)
                      +.||.|++||+.+++.+..+.....+..+.  +   ++.+++++ .++.|++||+.+++.. .+..|...|.+++|+|+ 
T Consensus       119 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~  198 (408)
T 4a11_B          119 SFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRY  198 (408)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSC
T ss_pred             eCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCC
Confidence            999999999999999999998777765554  2   34466665 7889999999988766 77789999999999987 


Q ss_pred             --EEEEEeCCCcEEEEEeccCCccc------------cCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcc
Q 016224          241 --LLFAGTQDGAILAWKFNVTTNCF------------EPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQ  304 (393)
Q Consensus       241 --~l~~~~~dg~I~vwd~~~~~~~~------------~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~  304 (393)
                        +|++++.||.|++||++......            ........|...|.+++++  +++|++++.|+.|++||+++++
T Consensus       199 ~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  278 (408)
T 4a11_B          199 DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE  278 (408)
T ss_dssp             TTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             CcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Confidence              68999999999999998764211            1122235788899999996  5689999999999999999988


Q ss_pred             eeeEeccCcc------ceEEEEEc-CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe
Q 016224          305 CIQTLTEHTS------VVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC  377 (393)
Q Consensus       305 ~~~~~~~~~~------~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s  377 (393)
                      ....+..+..      ....+... ...+++++.|+.|++||+.+++.+..+..|..  .+.+++|+|++.   +|++++
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~--~v~~~~~s~~~~---~l~s~~  353 (408)
T 4a11_B          279 NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK--TVDCCVFQSNFQ---ELYSGS  353 (408)
T ss_dssp             BCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS--CEEEEEEETTTT---EEEEEE
T ss_pred             cceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC--eEEEEEEcCCCC---EEEEEC
Confidence            7655543221      11122222 45777788899999999998888777766654  599999998766   999999


Q ss_pred             CCCeEEEEeCCceee
Q 016224          378 NDNSVRFYDLPSVII  392 (393)
Q Consensus       378 ~dg~I~iwd~~s~~l  392 (393)
                      .||.|++||+.+++.
T Consensus       354 ~dg~i~iw~~~~~~~  368 (408)
T 4a11_B          354 RDCNILAWVPSLYEP  368 (408)
T ss_dssp             TTSCEEEEEECC---
T ss_pred             CCCeEEEEeCCCCCc
Confidence            999999999998753

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=8.1e-32  Score=246.12  Aligned_cols=269  Identities=15%  Similarity=0.236  Sum_probs=217.9

Q ss_pred             ceeecceEEeeEecCc-E-EEecCCCeEEEEECCCCc--EEEEEec--CCcCCEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 016224          106 AVIKTDILCRNWVQGN-C-MYGEKCKFLHSWTVGDGF--KLLTQLE--GHQKVVSGITLPSGSDKLYSGSKDETVRVWDC  179 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~~-~-~~g~~dg~i~vwd~~~~~--~~~~~l~--~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~  179 (393)
                      ..|...|.++.|++++ . ++++ |+.|++||+.++.  ..+..+.  +|...|.+++|+|++++|++++.|+.|++||+
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~  126 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL  126 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred             ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence            3577899999999874 3 3455 9999999998652  2233333  79999999999999999999999999999999


Q ss_pred             CCCe--EEEEEecC-CceEEE--EeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCc
Q 016224          180 ASGQ--CAGVINLG-GEVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGA  250 (393)
Q Consensus       180 ~~~~--~~~~~~~~-~~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~  250 (393)
                      .+++  ....+..+ ..+..+  .+++.+++++ .++.|++||+++++.. .+..|...|.+++|+++  +|++++.|+.
T Consensus       127 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  206 (337)
T 1gxr_A          127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT  206 (337)
T ss_dssp             CCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             CCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCc
Confidence            9887  44444443 334443  3577777765 7899999999998877 67789999999999987  9999999999


Q ss_pred             EEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEE
Q 016224          251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFL  326 (393)
Q Consensus       251 I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l  326 (393)
                      |++||++...    ....+ .+...+.+++++  +++|++++.|+.|++||+++++. ..+..|...+.++.|+  +++|
T Consensus       207 i~~~d~~~~~----~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l  280 (337)
T 1gxr_A          207 VRSWDLREGR----QLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWF  280 (337)
T ss_dssp             EEEEETTTTE----EEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEE
T ss_pred             EEEEECCCCc----eEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEE
Confidence            9999998763    33333 366778888885  56999999999999999998775 4677899999999998  6799


Q ss_pred             EEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          327 LSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       327 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      ++++.|+.|++||+.+++.+.. .  .+...+.++.|+|++.   +|++++.||.|++|++
T Consensus       281 ~~~~~dg~i~~~~~~~~~~~~~-~--~~~~~v~~~~~s~~~~---~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          281 VSTGKDNLLNAWRTPYGASIFQ-S--KESSSVLSCDISVDDK---YIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEETTSEEEEEETTTCCEEEE-E--ECSSCEEEEEECTTSC---EEEEEETTSCEEEEEE
T ss_pred             EEecCCCcEEEEECCCCeEEEE-e--cCCCcEEEEEECCCCC---EEEEecCCCeEEEEEE
Confidence            9999999999999988766533 2  2345699999988765   9999999999999997

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6.7e-32  Score=246.18  Aligned_cols=239  Identities=20%  Similarity=0.346  Sum_probs=201.0

Q ss_pred             EEEEEecCCcCCEEEEEecCCC-CEEEEEeCCCcEEEEECCC-----CeEEEEEecCC-ceEE--EEeCCCEEEEE-cCC
Q 016224          141 KLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCAS-----GQCAGVINLGG-EVGC--MISEGPWIFIG-VTN  210 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~-~~l~s~s~dg~v~iwd~~~-----~~~~~~~~~~~-~~~~--~~~~~~~l~~~-~~~  210 (393)
                      .+..+|.+|.+.|++++|+|++ ++|+||+.|++|++|++..     +..+..+..+. .+.+  +.+++.+++++ .|+
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~   87 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK   87 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence            5667899999999999999965 8999999999999999864     23455665543 3433  34678888765 789


Q ss_pred             eEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC----
Q 016224          211 FVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA----  283 (393)
Q Consensus       211 ~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~----  283 (393)
                      .|++||+.+++.+ .+.+|...|.+++|+++  +|++++.|+.|++||++.     .....+.+|...|.++.+.+    
T Consensus        88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-----~~~~~~~~h~~~v~~~~~~~~~~~  162 (319)
T 3frx_A           88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-----QCLATLLGHNDWVSQVRVVPNEKA  162 (319)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-----CEEEEECCCSSCEEEEEECCC---
T ss_pred             EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----CeEEEEeccCCcEEEEEEccCCCC
Confidence            9999999999877 78899999999999987  999999999999999864     34567788999999998854    


Q ss_pred             ----CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCcc
Q 016224          284 ----NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHG  357 (393)
Q Consensus       284 ----~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  357 (393)
                          .+|++++.|+.|++||+++++....+.+|...|.+++|+  +++|++++.|+.|+|||+.+.+.+..+..   ...
T Consensus       163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~  239 (319)
T 3frx_A          163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA---QDE  239 (319)
T ss_dssp             ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC---CSC
T ss_pred             CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC---CCc
Confidence                379999999999999999999999999999999999998  67999999999999999988776665543   345


Q ss_pred             EEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          358 VLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       358 v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      +.+++|+|++.   +|++++. ..|++|++....
T Consensus       240 v~~~~~sp~~~---~la~~~~-~~i~v~~~~~~~  269 (319)
T 3frx_A          240 VFSLAFSPNRY---WLAAATA-TGIKVFSLDPQY  269 (319)
T ss_dssp             EEEEEECSSSS---EEEEEET-TEEEEEEETTEE
T ss_pred             EEEEEEcCCCC---EEEEEcC-CCcEEEEeCcCe
Confidence            99999998765   7777765 469999988764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.1e-33  Score=255.83  Aligned_cols=242  Identities=20%  Similarity=0.242  Sum_probs=194.1

Q ss_pred             ceeecceEEeeEecC--cEEEecCCCeEEEEECCCCc-EEEEEecCCcCCEEEEEecC--CCCEEEEEeCCCcEEEEECC
Q 016224          106 AVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPS--GSDKLYSGSKDETVRVWDCA  180 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~-~~~~~l~~h~~~I~~i~~s~--~~~~l~s~s~dg~v~iwd~~  180 (393)
                      ..|...|.+++|+++  .+++|+.|++|+|||+.++. ..+..+.+|...|++++|++  ++++|+||+.|++|++||++
T Consensus        10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~   89 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE   89 (316)
T ss_dssp             ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCS
T ss_pred             ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECC
Confidence            457889999999976  46689999999999998762 35778999999999999976  48999999999999999998


Q ss_pred             CCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEEe
Q 016224          181 SGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKF  256 (393)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~----~l~~~~~dg~I~vwd~  256 (393)
                      +++....                                   ..+.+|...|.+++|+|+    +|++++.|+.|++||+
T Consensus        90 ~~~~~~~-----------------------------------~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~  134 (316)
T 3bg1_A           90 NGTWEKS-----------------------------------HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY  134 (316)
T ss_dssp             SSCCCEE-----------------------------------EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEE
T ss_pred             CCcceEE-----------------------------------EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEec
Confidence            7642111                                   134578889999999985    8999999999999999


Q ss_pred             ccCCccccCceeecCceeeEEEEEEcC-------------------CEEEEecCCCcEEEeeCCCc---ceeeEeccCcc
Q 016224          257 NVTTNCFEPAASLKGHSLAVVSLVVGA-------------------NKLYSGSMDNSIRVWNLETL---QCIQTLTEHTS  314 (393)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~l~~~~-------------------~~l~sg~~dg~i~iwd~~~~---~~~~~~~~~~~  314 (393)
                      +.... ......+.+|...|.+++|++                   .+|++|+.|++|++||++..   +++.++.+|..
T Consensus       135 ~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~  213 (316)
T 3bg1_A          135 TGEGQ-WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD  213 (316)
T ss_dssp             CSSSC-EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS
T ss_pred             CCCCC-cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC
Confidence            86521 122345567888888888864                   47999999999999999754   46788899999


Q ss_pred             ceEEEEEcC------CEEEEEeCCCcEEEEEcCCCc----ceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEE
Q 016224          315 VVMSLLCWD------QFLLSCSLDKTIKVWFATDSG----NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRF  384 (393)
Q Consensus       315 ~v~~l~~~~------~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~i  384 (393)
                      .|.+++|++      .+|++++.|++|+||++.+..    ....+..+  ...+.+++|+|++.   +|++++.|+.|+|
T Consensus       214 ~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~---~las~~~D~~v~l  288 (316)
T 3bg1_A          214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITAN---ILAVSGGDNKVTL  288 (316)
T ss_dssp             CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTC---CEEEEESSSCEEE
T ss_pred             ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCC---EEEEEcCCCeEEE
Confidence            999999984      589999999999999987621    12233333  45699999998766   8999999999999


Q ss_pred             EeCC
Q 016224          385 YDLP  388 (393)
Q Consensus       385 wd~~  388 (393)
                      |++.
T Consensus       289 w~~~  292 (316)
T 3bg1_A          289 WKES  292 (316)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9975

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6.1e-32  Score=253.69  Aligned_cols=231  Identities=23%  Similarity=0.424  Sum_probs=198.3

Q ss_pred             ceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 016224          111 DILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI  188 (393)
Q Consensus       111 ~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~  188 (393)
                      .|.+++|++++  +++|+.|+.|++||+.++ +.+..+.+|...|++++|+|++++|++++.|++|++||+.++++...+
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~  203 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENR-KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL  203 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence            58999999874  667999999999999998 889999999999999999999999999999999999999999999888


Q ss_pred             ecCCceEEEE--e-CCCEEEEE-cCCeEEEEECCCCcee-ee-------cCCCCcEEEEEEeCC--EEEEEeCCCcEEEE
Q 016224          189 NLGGEVGCMI--S-EGPWIFIG-VTNFVKAWNTQTNTDL-SL-------SGPVGQVYAMAVGND--LLFAGTQDGAILAW  254 (393)
Q Consensus       189 ~~~~~~~~~~--~-~~~~l~~~-~~~~i~v~d~~~~~~~-~~-------~~~~~~v~~l~~~~~--~l~~~~~dg~I~vw  254 (393)
                      .....+..+.  + ++.+++++ .|+.|++||++++..+ .+       .+|...|.+++|+++  +|++++.|+.|++|
T Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~w  283 (393)
T 1erj_A          204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW  283 (393)
T ss_dssp             ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence            8777665544  3 67777775 7899999999998765 33       578899999999988  99999999999999


Q ss_pred             EeccCCcc--------ccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--
Q 016224          255 KFNVTTNC--------FEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--  322 (393)
Q Consensus       255 d~~~~~~~--------~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--  322 (393)
                      |++.....        ......+.+|...|.+++++  +.+|++|+.|+.|++||+++++++..+.+|...|.++++.  
T Consensus       284 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~  363 (393)
T 1erj_A          284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG  363 (393)
T ss_dssp             EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred             ECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCC
Confidence            99764321        12334567899999999986  5699999999999999999999999999999999999986  


Q ss_pred             ------CCEEEEEeCCCcEEEEEcCC
Q 016224          323 ------DQFLLSCSLDKTIKVWFATD  342 (393)
Q Consensus       323 ------~~~l~s~s~dg~i~iwd~~~  342 (393)
                            +++|++|+.|++|+||++..
T Consensus       364 ~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          364 SSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             CTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             cCcCCCCCEEEEECCCCcEEECcccc
Confidence                  35899999999999999854

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-33  Score=262.62  Aligned_cols=278  Identities=14%  Similarity=0.104  Sum_probs=203.7

Q ss_pred             eecceEEeeEecCc--EEEecCCCeEEEEECCCCc-EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-
Q 016224          108 IKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ-  183 (393)
Q Consensus       108 ~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~-~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~-  183 (393)
                      +..+|+|++|++++  +++|+.|+.|++||+.++. +.+..+.+|...|++++|+|++++|++++.|++|++||+.+++ 
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~   89 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT   89 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence            45689999999774  5568899999999998763 6777889999999999999999999999999999999999877 


Q ss_pred             --EEEEE-ecCCceEEEE--eCCCEEEEE-cCCeEEEEECCCCce----eeecC-CCCcEEEEEEeCC--EEEEEeCCCc
Q 016224          184 --CAGVI-NLGGEVGCMI--SEGPWIFIG-VTNFVKAWNTQTNTD----LSLSG-PVGQVYAMAVGND--LLFAGTQDGA  250 (393)
Q Consensus       184 --~~~~~-~~~~~~~~~~--~~~~~l~~~-~~~~i~v~d~~~~~~----~~~~~-~~~~v~~l~~~~~--~l~~~~~dg~  250 (393)
                        ....+ .+...+.++.  +++.+++++ .|+.|++||+++++.    ..+.. |...|.+++|+|+  +|++++.|+.
T Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~  169 (377)
T 3dwl_C           90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRK  169 (377)
T ss_dssp             CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSC
T ss_pred             eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCE
Confidence              34333 3444555554  466666655 789999999998873    36666 9999999999998  9999999999


Q ss_pred             EEEEEeccCCc--------------cccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcce----eeEec
Q 016224          251 ILAWKFNVTTN--------------CFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQC----IQTLT  310 (393)
Q Consensus       251 I~vwd~~~~~~--------------~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~----~~~~~  310 (393)
                      |++||+.....              ..++...+ .|...|.+++|+  +++|++++.|+.|++||+++++.    +..+.
T Consensus       170 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  248 (377)
T 3dwl_C          170 AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK  248 (377)
T ss_dssp             EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE
T ss_pred             EEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec
Confidence            99999964321              01233444 788999999996  56899999999999999999988    88899


Q ss_pred             cCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCc-c--------------------------e---------EEEEe-
Q 016224          311 EHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSG-N--------------------------L---------EVTYT-  351 (393)
Q Consensus       311 ~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~-~--------------------------~---------~~~~~-  351 (393)
                      .|...|.+++|+  +++|++++.++.+ +|+..... .                          .         ..+.. 
T Consensus       249 ~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (377)
T 3dwl_C          249 LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNM  327 (377)
T ss_dssp             CSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC----------------
T ss_pred             CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccch
Confidence            999999999998  5677777655555 77664221 0                          0         00000 


Q ss_pred             -------------ecCCccEEEEEeeeCCCC-CcEEEEEeCCCeEEEEeC
Q 016224          352 -------------HNEEHGVLALCGMPDSEG-KPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       352 -------------~~~~~~v~~~~~~~~~~~-~~~l~s~s~dg~I~iwd~  387 (393)
                                   ..+...+.++.+.+.... ...|+|++.||.|++||+
T Consensus       328 ~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          328 DLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ---------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             hhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                         013456888887664321 125999999999999996

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.1e-31  Score=254.01  Aligned_cols=269  Identities=19%  Similarity=0.313  Sum_probs=220.2

Q ss_pred             ceeecceEEeeEecC-cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEec--CCCCEEEEEeCCCcEEEEECCCC
Q 016224          106 AVIKTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLP--SGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~-~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s--~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      ..|...|.|++|+++ .+++|+.||+|++||+.++ +.+..+.+|...|.+++|+  +++++|++++.|++|++||+.++
T Consensus       159 ~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~  237 (464)
T 3v7d_B          159 SGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG-CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE  237 (464)
T ss_dssp             CCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCC
T ss_pred             eCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCC-cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCC
Confidence            457889999999977 5668999999999999998 8899999999999999998  57899999999999999999887


Q ss_pred             eEE-----------------------EEEe-cCCceEEEEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEE
Q 016224          183 QCA-----------------------GVIN-LGGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMA  236 (393)
Q Consensus       183 ~~~-----------------------~~~~-~~~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~  236 (393)
                      +..                       ..+. +...+.++.+++.+++++ .|+.|++||+.+++.+ .+.+|...|.+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~  317 (464)
T 3v7d_B          238 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI  317 (464)
T ss_dssp             CCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             cccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEE
Confidence            532                       2232 234456667778877776 7899999999998877 7788999999999


Q ss_pred             EeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCcc
Q 016224          237 VGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTS  314 (393)
Q Consensus       237 ~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  314 (393)
                      |+++  +|++++.||.|++||++++    +.+..+.+|...|.++.+++++|++++.||.|++||+++++....+. +..
T Consensus       318 ~~~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~  392 (464)
T 3v7d_B          318 YDHERKRCISASMDTTIRIWDLENG----ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH-HTN  392 (464)
T ss_dssp             EETTTTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE-CTT
T ss_pred             EcCCCCEEEEEeCCCcEEEEECCCC----cEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeec-CCC
Confidence            9987  9999999999999999886    56778889999999999999999999999999999999987766654 333


Q ss_pred             ce--EEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          315 VV--MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       315 ~v--~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                      .+  .++..++++|++++ |+.|++||+.+++.+.... ..+...+.+++|+    ++.++++++.||.+.+|-
T Consensus       393 ~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~-~~~~~~v~~v~~~----~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          393 LSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANI-LKDADQIWSVNFK----GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             CCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCT-TTTCSEEEEEEEE----TTEEEEEEEETTEEEEEE
T ss_pred             CccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhh-ccCCCcEEEEEec----CCEEEEEEEeCCeEEEEE
Confidence            44  44445588999988 9999999999887655422 2335568899885    333667777787766554

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=8.5e-32  Score=254.28  Aligned_cols=274  Identities=16%  Similarity=0.275  Sum_probs=214.6

Q ss_pred             eEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 016224          112 ILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN  189 (393)
Q Consensus       112 i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  189 (393)
                      +.+..|+++  .+++|+.|+.|++||+.++ +....+.+|...|++++|+|++++|++++.|++|++||+.+++.+..+.
T Consensus       100 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  178 (420)
T 3vl1_A          100 TAVDTAKLQMRRFILGTTEGDIKVLDSNFN-LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI  178 (420)
T ss_dssp             EEEEEECSSSCEEEEEETTSCEEEECTTSC-EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE
T ss_pred             eEEEEEecCCCEEEEEECCCCEEEEeCCCc-ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc
Confidence            344456654  4668999999999999988 8888889999999999999999999999999999999999999888887


Q ss_pred             cC-CceEE--EEeCCCEEEEE-cCCeEEEEECCCCcee-eec---CCCCcEEEEEE---------------------eCC
Q 016224          190 LG-GEVGC--MISEGPWIFIG-VTNFVKAWNTQTNTDL-SLS---GPVGQVYAMAV---------------------GND  240 (393)
Q Consensus       190 ~~-~~~~~--~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~---~~~~~v~~l~~---------------------~~~  240 (393)
                      .+ ..+.+  +.+++.+++++ .|+.|++||+++++.. .+.   .+...|.++.+                     +++
T Consensus       179 ~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  258 (420)
T 3vl1_A          179 GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY  258 (420)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC
Confidence            54 44444  34678877765 7899999999998876 333   34555666655                     555


Q ss_pred             --EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC---EEEEecCCCcEEEeeCCCcce-eeEecc-Cc
Q 016224          241 --LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN---KLYSGSMDNSIRVWNLETLQC-IQTLTE-HT  313 (393)
Q Consensus       241 --~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~l~sg~~dg~i~iwd~~~~~~-~~~~~~-~~  313 (393)
                        +|++++.||.|++||++...   ........|...|.+++|+++   +|++++.||.|++||+++++. +..+.. |.
T Consensus       259 ~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~  335 (420)
T 3vl1_A          259 GKYVIAGHVSGVITVHNVFSKE---QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG  335 (420)
T ss_dssp             TEEEEEEETTSCEEEEETTTCC---EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT
T ss_pred             CCEEEEEcCCCeEEEEECCCCc---eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC
Confidence              89999999999999998764   222333468889999999743   899999999999999998754 777776 67


Q ss_pred             cceEEEEEc-CCEEEEEeCCCcEEEEEcCCCcceEEE-------EeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEE
Q 016224          314 SVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVT-------YTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFY  385 (393)
Q Consensus       314 ~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iw  385 (393)
                      ..+.++.+. +++|++++.|+.|++|++........+       ........+..++|+|++...-.|++.+.+|.+.+|
T Consensus       336 ~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~  415 (420)
T 3vl1_A          336 TPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALY  415 (420)
T ss_dssp             SCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEE
T ss_pred             CCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEE
Confidence            788888776 669999999999999999764322111       112233458899999986644457777789999999


Q ss_pred             eCCc
Q 016224          386 DLPS  389 (393)
Q Consensus       386 d~~s  389 (393)
                      +++.
T Consensus       416 ~~~~  419 (420)
T 3vl1_A          416 NLSN  419 (420)
T ss_dssp             ESCC
T ss_pred             eccC
Confidence            9875

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-31  Score=244.39  Aligned_cols=244  Identities=19%  Similarity=0.271  Sum_probs=190.9

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC--eEEEEEe---cCCceEEE--EeCCCEEEEE-cCCeE
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG--QCAGVIN---LGGEVGCM--ISEGPWIFIG-VTNFV  212 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~---~~~~~~~~--~~~~~~l~~~-~~~~i  212 (393)
                      +++.++++|...|.+++|+++  +|++|+.|++|++||+.++  +.+..+.   +...+.++  .+++.+|+++ .|+.|
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v   82 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV   82 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence            678899999999999999987  9999999999999999875  4555552   33445444  3678888776 78999


Q ss_pred             EEEECCCC-------cee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc
Q 016224          213 KAWNTQTN-------TDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG  282 (393)
Q Consensus       213 ~v~d~~~~-------~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~  282 (393)
                      ++|++...       +.. .+.+|...|.+++|+|+  +|++++.|++|++||++......+.+..+.+|...|.+++|+
T Consensus        83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~  162 (330)
T 2hes_X           83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH  162 (330)
T ss_dssp             EEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred             EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence            99998532       222 67889999999999998  999999999999999965433335567788999999999996


Q ss_pred             --CCEEEEecCCCcEEEeeCCCc--ceeeEeccCccceEEEEEcC----CEEEEEeCCCcEEEEEcCCCcc-------eE
Q 016224          283 --ANKLYSGSMDNSIRVWNLETL--QCIQTLTEHTSVVMSLLCWD----QFLLSCSLDKTIKVWFATDSGN-------LE  347 (393)
Q Consensus       283 --~~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~~~----~~l~s~s~dg~i~iwd~~~~~~-------~~  347 (393)
                        +++|++++.|++|++||+.++  +++..+.+|...|.++.|++    .+|++++.|++|++||+.....       ..
T Consensus       163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~  242 (330)
T 2hes_X          163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE  242 (330)
T ss_dssp             SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe
Confidence              569999999999999998766  67889999999999999984    3799999999999999864321       11


Q ss_pred             EEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          348 VTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       348 ~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      ......+...+.+++|++..    +|++++.||.|++|++.++
T Consensus       243 ~~~~~~h~~~v~~v~~s~~~----~l~s~~~dg~v~iw~~~~~  281 (330)
T 2hes_X          243 AILPDVHKRQVYNVAWGFNG----LIASVGADGVLAVYEEVDG  281 (330)
T ss_dssp             EECCSCCSSCEEEEEECTTS----CEEEEETTSCEEEEEEETT
T ss_pred             eecccccccceEEEEEcCCC----EEEEEeCCCEEEEEEcCCC
Confidence            11111234569999998432    6999999999999998765

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.9e-31  Score=244.63  Aligned_cols=247  Identities=21%  Similarity=0.323  Sum_probs=199.2

Q ss_pred             CcEEEEEecCCcC-CEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEE--E-e-cCCceEEE--EeCCCEEEEE-cCC
Q 016224          139 GFKLLTQLEGHQK-VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV--I-N-LGGEVGCM--ISEGPWIFIG-VTN  210 (393)
Q Consensus       139 ~~~~~~~l~~h~~-~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~--~-~-~~~~~~~~--~~~~~~l~~~-~~~  210 (393)
                      ..+++.++.+|.. .|.+++|+|++++||+|+.|++|+|||+.+++....  + . +...+.++  .+++.+|+++ .|+
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~   83 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA   83 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence            3478889999988 999999999999999999999999999988864432  2 1 23445444  3678888876 789


Q ss_pred             eEEEEECCCCce---eeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--C
Q 016224          211 FVKAWNTQTNTD---LSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--A  283 (393)
Q Consensus       211 ~i~v~d~~~~~~---~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~  283 (393)
                      .|++|+...+..   ..+.+|...|.+++|+|+  +|++++.|+.|++||+..... ......+..|...|.+++|+  +
T Consensus        84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~  162 (345)
T 3fm0_A           84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE-YECVSVLNSHTQDVKHVVWHPSQ  162 (345)
T ss_dssp             CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC-EEEEEEECCCCSCEEEEEECSSS
T ss_pred             cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC-eEEEEEecCcCCCeEEEEECCCC
Confidence            999999987643   377899999999999988  999999999999999987532 23456678899999999986  5


Q ss_pred             CEEEEecCCCcEEEeeCCCcc--eeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcce------------E
Q 016224          284 NKLYSGSMDNSIRVWNLETLQ--CIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNL------------E  347 (393)
Q Consensus       284 ~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~------------~  347 (393)
                      ++|++++.|++|++||+++++  +..++.+|...|.+++|+  +++|++++.|++|+|||.......            .
T Consensus       163 ~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~  242 (345)
T 3fm0_A          163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK  242 (345)
T ss_dssp             SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred             CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence            689999999999999998765  457889999999999998  679999999999999997432210            1


Q ss_pred             E--EEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          348 V--TYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       348 ~--~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      .  .....+...+.+++|+++..   .|++++.|+.|++|++..
T Consensus       243 ~~~~~~~~h~~~v~~v~~~~~~~---~l~s~~~d~~i~vw~~~~  283 (345)
T 3fm0_A          243 CICTLSGFHSRTIYDIAWCQLTG---ALATACGDDAIRVFQEDP  283 (345)
T ss_dssp             EEEEECSSCSSCEEEEEECTTTC---CEEEEETTSCEEEEEECT
T ss_pred             eeEEecCCCCCcEEEEEEecCCC---EEEEEeCCCeEEEEEeCC
Confidence            1  11112345699999988766   899999999999999764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9e-32  Score=254.10  Aligned_cols=267  Identities=12%  Similarity=0.112  Sum_probs=211.6

Q ss_pred             eEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 016224          112 ILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN  189 (393)
Q Consensus       112 i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  189 (393)
                      +++++|+++  .+++|+.|+.|++||+.++ +....+..| ..+....|++++++|++++.||.|++||+.+++....+.
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~-~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  136 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIR-DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ  136 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSE-ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEeccc-ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence            456778765  5778999999999999876 555555555 445555789999999999999999999999998887764


Q ss_pred             -cCCceEEEE--eCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCcc
Q 016224          190 -LGGEVGCMI--SEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNC  262 (393)
Q Consensus       190 -~~~~~~~~~--~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~  262 (393)
                       +...+.++.  +++.+|+++ .|+.|++||+.+++.. .+.+|...|.+++|+|+  +|++++.|+.|++||++++.  
T Consensus       137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--  214 (420)
T 3vl1_A          137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT--  214 (420)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE--
T ss_pred             cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc--
Confidence             445555543  577777765 7889999999988766 77889999999999988  89999999999999998763  


Q ss_pred             ccCceeec---CceeeEEEEEE-----------------------cCCEEEEecCCCcEEEeeCCCcceeeEec-cCccc
Q 016224          263 FEPAASLK---GHSLAVVSLVV-----------------------GANKLYSGSMDNSIRVWNLETLQCIQTLT-EHTSV  315 (393)
Q Consensus       263 ~~~~~~~~---~~~~~v~~l~~-----------------------~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~  315 (393)
                        ....+.   .+...+.++.+                       ++++|++++.||.|++||+++++.+..+. .|...
T Consensus       215 --~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  292 (420)
T 3vl1_A          215 --TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS  292 (420)
T ss_dssp             --EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSC
T ss_pred             --eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCC
Confidence              333443   34555665554                       35689999999999999999998877775 47889


Q ss_pred             eEEEEEc--CC-EEEEEeCCCcEEEEEcCCCcc-eEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          316 VMSLLCW--DQ-FLLSCSLDKTIKVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       316 v~~l~~~--~~-~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      |.+++|+  +. +|++++.||.|++||+++.+. +..+..+. ...+..+. .+++.   +|++++.|+.|++|++.+
T Consensus       293 v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~-~~~~~---~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          293 CNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE-GTPINNVY-FAAGA---LFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST-TSCEEEEE-EETTE---EEEEETTTEEEEEEEECC
T ss_pred             ceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC-CCCceEEE-eCCCC---EEEEecCCccEEEEeccC
Confidence            9999998  44 999999999999999998765 45554433 33566664 44433   899999999999999875

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-32  Score=259.38  Aligned_cols=275  Identities=13%  Similarity=0.212  Sum_probs=223.0

Q ss_pred             eecceEEeeEecCc---EEEe----------cCCCeEEEEECCCCc--EEEEEecCCcCCEEEEEecCCCCEEEEEeCCC
Q 016224          108 IKTDILCRNWVQGN---CMYG----------EKCKFLHSWTVGDGF--KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE  172 (393)
Q Consensus       108 ~~~~i~c~~~~~~~---~~~g----------~~dg~i~vwd~~~~~--~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg  172 (393)
                      +...|.|++|++++   +++|          +.|+.|++||+.++.  +.+..+ .|...|++++|+|++++|++++.||
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg   89 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG   89 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence            34578999999873   4457          789999999998762  133333 5899999999999999999999999


Q ss_pred             cEEEEECCC----CeEEEEEecC-CceEEE--EeC-CCEEEEE-cCCeEEEEECCCCc------ee----eecCCCCcEE
Q 016224          173 TVRVWDCAS----GQCAGVINLG-GEVGCM--ISE-GPWIFIG-VTNFVKAWNTQTNT------DL----SLSGPVGQVY  233 (393)
Q Consensus       173 ~v~iwd~~~----~~~~~~~~~~-~~~~~~--~~~-~~~l~~~-~~~~i~v~d~~~~~------~~----~~~~~~~~v~  233 (393)
                      .|++||+.+    .+.+..+..+ ..+.++  .++ +.+++++ .|+.|++||+.+++      ..    ....|...|.
T Consensus        90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  169 (416)
T 2pm9_A           90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI  169 (416)
T ss_dssp             CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred             eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence            999999987    3466666543 344443  344 6777766 78899999999876      22    2367889999


Q ss_pred             EEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCc------eeeEEEEEEcC---CEEEEecCCC---cEEEe
Q 016224          234 AMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGH------SLAVVSLVVGA---NKLYSGSMDN---SIRVW  298 (393)
Q Consensus       234 ~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~------~~~v~~l~~~~---~~l~sg~~dg---~i~iw  298 (393)
                      +++|+++   +|++++.|+.|++||++..    +....+..+      ...+.+++|++   .+|++++.|+   .|++|
T Consensus       170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~  245 (416)
T 2pm9_A          170 SLAWNQSLAHVFASAGSSNFASIWDLKAK----KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW  245 (416)
T ss_dssp             EEEECSSCTTEEEEESSSSCEEEEETTTT----EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred             EEEeCCCCCcEEEEEcCCCCEEEEECCCC----CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence            9999986   8999999999999999886    334444444      78899999974   4899999998   99999


Q ss_pred             eCCCc-ceeeEec-cCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEE
Q 016224          299 NLETL-QCIQTLT-EHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVL  373 (393)
Q Consensus       299 d~~~~-~~~~~~~-~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  373 (393)
                      |++++ +++..+. +|...|.+++|+   +++|++++.|+.|++||+.+.+.+..+..|..  .+.+++|+|+.+  .+|
T Consensus       246 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~--~~l  321 (416)
T 2pm9_A          246 DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN--WCFKTKFAPEAP--DLF  321 (416)
T ss_dssp             ETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS--CCCCEEECTTCT--TEE
T ss_pred             eCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC--ceEEEEECCCCC--CEE
Confidence            99986 6788888 899999999996   56999999999999999998888777776654  488899988752  399


Q ss_pred             EEEeCCCeEEEEeCCcee
Q 016224          374 LCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       374 ~s~s~dg~I~iwd~~s~~  391 (393)
                      ++++.|+.|++|++.+++
T Consensus       322 ~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          322 ACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             EECCSSSEEEEEESCCCC
T ss_pred             EEEecCCcEEEEEccCCC
Confidence            999999999999998764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=7.4e-31  Score=241.69  Aligned_cols=242  Identities=20%  Similarity=0.268  Sum_probs=192.7

Q ss_pred             EEEEEecCCcCCEEEEEe-----cC-CCCEEEEEeCCCcEEEEECCCC-------eEEEEEecC-CceEEE--EeCCCEE
Q 016224          141 KLLTQLEGHQKVVSGITL-----PS-GSDKLYSGSKDETVRVWDCASG-------QCAGVINLG-GEVGCM--ISEGPWI  204 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~-----s~-~~~~l~s~s~dg~v~iwd~~~~-------~~~~~~~~~-~~~~~~--~~~~~~l  204 (393)
                      ++...+++|...|++++|     ++ ++++|+||+.|++|++||+.+.       .....+..+ ..+.++  .+++.++
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l   91 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA   91 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence            567789999999999999     66 8999999999999999998753       344555544 344443  3577887


Q ss_pred             EEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEE
Q 016224          205 FIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLV  280 (393)
Q Consensus       205 ~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~  280 (393)
                      +++ .|+.|++||+++++.+ .+.+|...|.+++|+|+  +|++++.|+.|++||+.....  ........|...|.++.
T Consensus        92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~v~~~~  169 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK--FSSAEKENHSDWVSCVR  169 (343)
T ss_dssp             EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE--EECCTTTSCSSCEEEEE
T ss_pred             EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce--eeeecccCCCceeeeee
Confidence            765 7899999999998876 78899999999999988  999999999999999874311  11122336888899999


Q ss_pred             EcC------------CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcce
Q 016224          281 VGA------------NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNL  346 (393)
Q Consensus       281 ~~~------------~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~  346 (393)
                      +++            .+|++++.|+.|++|| .+.+....+.+|...|.+++|+  +++|++++.|+.|++||+......
T Consensus       170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~  248 (343)
T 2xzm_R          170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP  248 (343)
T ss_dssp             ECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC
T ss_pred             eccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc
Confidence            864            5799999999999999 4567788899999999999998  679999999999999999554433


Q ss_pred             EEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          347 EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       347 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      .....+  ...+.+++|+|+..   +|+ ++.|+.|++|++.+++
T Consensus       249 ~~~~~~--~~~v~~v~~sp~~~---~la-~~~d~~v~iw~~~~~~  287 (343)
T 2xzm_R          249 QREFDA--GSTINQIAFNPKLQ---WVA-VGTDQGVKIFNLMTQS  287 (343)
T ss_dssp             SEEEEC--SSCEEEEEECSSSC---EEE-EEESSCEEEEESSSCC
T ss_pred             ceeecC--CCcEEEEEECCCCC---EEE-EECCCCEEEEEeCCCC
Confidence            333323  23589999998755   565 5568889999997653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-32  Score=266.25  Aligned_cols=262  Identities=10%  Similarity=0.026  Sum_probs=195.8

Q ss_pred             EecCCCeEEEEECCCCcE---EEEEecCCcCCEEEEEecCC------CCEEEEEeCCCcEEEEECCCCeEE---------
Q 016224          124 YGEKCKFLHSWTVGDGFK---LLTQLEGHQKVVSGITLPSG------SDKLYSGSKDETVRVWDCASGQCA---------  185 (393)
Q Consensus       124 ~g~~dg~i~vwd~~~~~~---~~~~l~~h~~~I~~i~~s~~------~~~l~s~s~dg~v~iwd~~~~~~~---------  185 (393)
                      +++.|++|+|||+.++..   ...++.+|.+.|.+|+|+|+      +.+||+++.||+|+|||+.+++..         
T Consensus       178 S~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~  257 (524)
T 2j04_B          178 KEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEK  257 (524)
T ss_dssp             ----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCS
T ss_pred             cCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecC
Confidence            466889999999976621   23456778899999999986      579999999999999999876421         


Q ss_pred             --EEEecC-CceEEEE-eCCCEEEEE-cCCeEEEEECCCCcee--eecCCCCcEEEE--EEeC---CEEEEEeCCCcEEE
Q 016224          186 --GVINLG-GEVGCMI-SEGPWIFIG-VTNFVKAWNTQTNTDL--SLSGPVGQVYAM--AVGN---DLLFAGTQDGAILA  253 (393)
Q Consensus       186 --~~~~~~-~~~~~~~-~~~~~l~~~-~~~~i~v~d~~~~~~~--~~~~~~~~v~~l--~~~~---~~l~~~~~dg~I~v  253 (393)
                        ..+..+ ..+.++. ..+..|++| .|++|++||++++...  .+..|...|.++  .|++   .+|++++.|++|++
T Consensus       258 p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvkl  337 (524)
T 2j04_B          258 PSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI  337 (524)
T ss_dssp             CSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred             ceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence              233322 3455544 234456655 8899999999976432  578999999999  4565   38999999999999


Q ss_pred             EEeccCCccccCceeecCcee--eEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEE
Q 016224          254 WKFNVTTNCFEPAASLKGHSL--AVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLL  327 (393)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~--~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~  327 (393)
                      ||+++.    +....+.+|..  .|.+++|+  +..|++++.|++|++||++++.++.++.+|...|++++|+  +++|+
T Consensus       338 WD~~~~----~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~  413 (524)
T 2j04_B          338 FNPKDI----ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVL  413 (524)
T ss_dssp             ECGGGH----HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCE
T ss_pred             EECCCC----CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEE
Confidence            999876    33334444432  46667776  4589999999999999999999999999999999999999  67899


Q ss_pred             EEeCCCcEEEEEcCCCc--------------ceEEE----------------------------EeecCCccEEEEEeee
Q 016224          328 SCSLDKTIKVWFATDSG--------------NLEVT----------------------------YTHNEEHGVLALCGMP  365 (393)
Q Consensus       328 s~s~dg~i~iwd~~~~~--------------~~~~~----------------------------~~~~~~~~v~~~~~~~  365 (393)
                      +|+.|++|+|||+....              .+..+                            ....+...|.+++|+|
T Consensus       414 Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp  493 (524)
T 2j04_B          414 AGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNE  493 (524)
T ss_dssp             EEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECC
T ss_pred             EEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCC
Confidence            99999999999863210              00000                            0011234588899999


Q ss_pred             CCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          366 DSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       366 ~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      +.+.+.+|++|+.||.|+||++.-
T Consensus       494 ~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          494 TSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             STTTTTEEEEECTTSEEEEEECSC
T ss_pred             CCCccHHHHhhccCceEEEEEccc
Confidence            877667999999999999999863

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.4e-31  Score=253.16  Aligned_cols=277  Identities=9%  Similarity=0.172  Sum_probs=215.2

Q ss_pred             cceeecceEEeeEecCc--EEEecCCCeEEEEECCCCc----------EEEEEecCCc------------CCEEEEEecC
Q 016224          105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGF----------KLLTQLEGHQ------------KVVSGITLPS  160 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~----------~~~~~l~~h~------------~~I~~i~~s~  160 (393)
                      ..++...|+|++|++++  +++|+.||.|+|||+.++.          +....+++|.            ..|++++|+|
T Consensus        24 ~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~  103 (447)
T 3dw8_B           24 DVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP  103 (447)
T ss_dssp             CCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred             cccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence            45667899999999874  5679999999999998762          2688999998            8899999999


Q ss_pred             CC--CEEEEEeCCCcEEEEECCCCeEEE---------------------------------------EEe--cCCceE--
Q 016224          161 GS--DKLYSGSKDETVRVWDCASGQCAG---------------------------------------VIN--LGGEVG--  195 (393)
Q Consensus       161 ~~--~~l~s~s~dg~v~iwd~~~~~~~~---------------------------------------~~~--~~~~~~--  195 (393)
                      ++  .+|++++.|++|++||+.+++...                                       .+.  +...+.  
T Consensus       104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  183 (447)
T 3dw8_B          104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI  183 (447)
T ss_dssp             CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred             CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence            98  799999999999999997654421                                       121  223333  


Q ss_pred             EEEeCCCEEEEEcCCeEEEEECCC-Cceee--------ecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccc
Q 016224          196 CMISEGPWIFIGVTNFVKAWNTQT-NTDLS--------LSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCF  263 (393)
Q Consensus       196 ~~~~~~~~l~~~~~~~i~v~d~~~-~~~~~--------~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~  263 (393)
                      .+.+++.+++++.|+.|++||+.. +..+.        +..|...|.+++|+|+   +|++++.||.|++||++......
T Consensus       184 ~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          184 SINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             EECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             EEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            344688999988899999999994 33333        5588999999999985   89999999999999999875333


Q ss_pred             cCceeecCcee------------eEEEEEEc--CCEEEEecCCCcEEEeeCCC-cceeeEeccCccce------------
Q 016224          264 EPAASLKGHSL------------AVVSLVVG--ANKLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVV------------  316 (393)
Q Consensus       264 ~~~~~~~~~~~------------~v~~l~~~--~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v------------  316 (393)
                      .....+..|..            .|.+++|+  +.+|++++. +.|++||+++ ++++..+..|...+            
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i  342 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI  342 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence            33567777765            89999997  568999988 9999999997 88999998886432            


Q ss_pred             ---EEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEee-------------------------------cCCccEEE
Q 016224          317 ---MSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTH-------------------------------NEEHGVLA  360 (393)
Q Consensus       317 ---~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------------------------------~~~~~v~~  360 (393)
                         ..++|+  +++|++++.|+.|++||+.+++.+. +..+                               .....+..
T Consensus       343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  421 (447)
T 3dw8_B          343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILH  421 (447)
T ss_dssp             GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCE
T ss_pred             ccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCceeE
Confidence               237777  6799999999999999998776542 2222                               12245788


Q ss_pred             EEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          361 LCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       361 ~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      ++|+|+..   +|++++.++ +++|.-
T Consensus       422 ~~~~p~~~---~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          422 TAWHPKEN---IIAVATTNN-LYIFQD  444 (447)
T ss_dssp             EEECSSSS---EEEEECSSC-EEEEEC
T ss_pred             EEECCCCC---EEEEEecce-eeeecc
Confidence            99999876   899888775 777764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=6.8e-31  Score=240.92  Aligned_cols=266  Identities=12%  Similarity=0.125  Sum_probs=215.7

Q ss_pred             eeecceEEeeEecC--cEEEecCCCeEEEEECCCCc--EEEEEecCCcCCEEEEEecCCCC-EEEEEeCCCcEEEEEC-C
Q 016224          107 VIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGF--KLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDC-A  180 (393)
Q Consensus       107 ~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~--~~~~~l~~h~~~I~~i~~s~~~~-~l~s~s~dg~v~iwd~-~  180 (393)
                      .|...|+|++|+++  .+++++.|+.|++|++.++.  .....+.+|...|++++|+|+++ +|++++.||.|++||+ .
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~   88 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG   88 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence            57789999999976  46689999999999998763  23455668999999999999999 9999999999999999 8


Q ss_pred             CCeEEEEEe--cCCceEEEE--eCCCEEEE-EcCCeEEEEECCC---------CceeeecCCCCcEEEEEEeCCEEEEEe
Q 016224          181 SGQCAGVIN--LGGEVGCMI--SEGPWIFI-GVTNFVKAWNTQT---------NTDLSLSGPVGQVYAMAVGNDLLFAGT  246 (393)
Q Consensus       181 ~~~~~~~~~--~~~~~~~~~--~~~~~l~~-~~~~~i~v~d~~~---------~~~~~~~~~~~~v~~l~~~~~~l~~~~  246 (393)
                      +++......  +...+.++.  + +.++++ +.|+.|++||+++         ++.+....+...|.+++|+++.+++++
T Consensus        89 ~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~  167 (342)
T 1yfq_A           89 SPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGM  167 (342)
T ss_dssp             SSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEE
T ss_pred             CCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEe
Confidence            877643333  445554443  4 666665 4889999999987         665544458899999999999999999


Q ss_pred             CCCcEEEEEecc-CCccccCceeecCceeeEEEEEEcC---CEEEEecCCCcEEEeeCCCc------ceeeEeccCcc--
Q 016224          247 QDGAILAWKFNV-TTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETL------QCIQTLTEHTS--  314 (393)
Q Consensus       247 ~dg~I~vwd~~~-~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~iwd~~~~------~~~~~~~~~~~--  314 (393)
                      .|+.|++||++. ...  ........|...+.++++++   ++|++++.||.|++||++..      +.+..+..|..  
T Consensus       168 ~d~~i~i~d~~~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  245 (342)
T 1yfq_A          168 NNSQVQWFRLPLCEDD--NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL  245 (342)
T ss_dssp             STTEEEEEESSCCTTC--CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT
T ss_pred             CCCeEEEEECCccccc--cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccc
Confidence            999999999987 432  22334456778899998864   68999999999999999887      78888888865  


Q ss_pred             -------ceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCe
Q 016224          315 -------VVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNS  381 (393)
Q Consensus       315 -------~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~  381 (393)
                             .|.+++|+  +++|++++.||.|++||+.+++.+..+..+. ...+.+++  |++.   +|++++.||.
T Consensus       246 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-~~~v~~~~--~~~~---~l~s~s~Dg~  315 (342)
T 1yfq_A          246 KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIA--CSDN---ILCLATSDDT  315 (342)
T ss_dssp             TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-SSEEEEEE--ECSS---EEEEEEECTH
T ss_pred             cccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhccc-CCCceEec--CCCC---eEEEEecCCc
Confidence                   99999998  6789999999999999999887766655541 34577777  6555   9999999999

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.8e-30  Score=265.54  Aligned_cols=277  Identities=17%  Similarity=0.229  Sum_probs=230.7

Q ss_pred             cceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224          105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      ...|...|.|++|++++  +++|+.||.|+|||+.++ +.+..+.+|...|++++|+|++++|++++.||.|++||+.++
T Consensus         9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~   87 (814)
T 3mkq_A            9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ-VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG   87 (814)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred             eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC-ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            45678899999999875  567889999999999998 889999999999999999999999999999999999999999


Q ss_pred             eEEEEEecC-CceEEE--EeCCCEEEEE-cCCeEEEEECCCCce-e-eecCCCCcEEEEEEeC-C--EEEEEeCCCcEEE
Q 016224          183 QCAGVINLG-GEVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTD-L-SLSGPVGQVYAMAVGN-D--LLFAGTQDGAILA  253 (393)
Q Consensus       183 ~~~~~~~~~-~~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~-~-~~~~~~~~v~~l~~~~-~--~l~~~~~dg~I~v  253 (393)
                      +.+..+..+ ..+.++  .+++.+++++ .|+.|++|++.++.. . .+..|...|.+++|+| +  .|++++.||.|++
T Consensus        88 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~v  167 (814)
T 3mkq_A           88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV  167 (814)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred             cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            999888754 445443  3678777765 788999999998733 3 6778999999999998 4  8999999999999


Q ss_pred             EEeccCCccccCceeecC-ceeeEEEEEE----cCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEE
Q 016224          254 WKFNVTTNCFEPAASLKG-HSLAVVSLVV----GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFL  326 (393)
Q Consensus       254 wd~~~~~~~~~~~~~~~~-~~~~v~~l~~----~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l  326 (393)
                      ||+....    ....+.. +...+.++++    ++.+|++++.|+.|++||+++++.+.++..|...|.++.|+  +++|
T Consensus       168 wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  243 (814)
T 3mkq_A          168 WSLGQST----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII  243 (814)
T ss_dssp             EETTCSS----CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEE
T ss_pred             EECCCCc----ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEE
Confidence            9998763    3334433 3367777777    45699999999999999999999999999999999999998  5699


Q ss_pred             EEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          327 LSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       327 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      ++++.||.|++||+.+......+..+.  ..+.+++|+|++.  .++++.+.|+.+.+|++...
T Consensus       244 ~~~~~dg~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  303 (814)
T 3mkq_A          244 ISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGR--KNYIASGFDNGFTVLSLGND  303 (814)
T ss_dssp             EEEETTSCEEEEETTTCSEEEEECCSS--SSEEEEEECTTCG--GGEEEEEETTEEEEEECSCC
T ss_pred             EEEeCCCeEEEEECCCCcEEEEeecCC--CcEEEEEEccCCC--ceEEEEEeCCCEEEEEcCCC
Confidence            999999999999998887766665554  3589999988753  23355555778899987653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.3e-30  Score=278.47  Aligned_cols=236  Identities=18%  Similarity=0.273  Sum_probs=198.8

Q ss_pred             cceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224          105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      ...|...|+|++|++++  +++|+.||+|++||+.++ +.+..+.+|...|++++|+|++++|++++.|++|++||+.++
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~  689 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG-EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG  689 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCC-CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC
Confidence            34578899999999874  567999999999999998 888999999999999999999999999999999999999999


Q ss_pred             eEEEEEecCC-ceEEEE--e--CCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEE
Q 016224          183 QCAGVINLGG-EVGCMI--S--EGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILA  253 (393)
Q Consensus       183 ~~~~~~~~~~-~~~~~~--~--~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~v  253 (393)
                      +.+..+..+. .+.++.  +  +..+++++ .|+.|++||+.+++.. .+.+|...|.+++|+|+  +|++++.||.|++
T Consensus       690 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~v  769 (1249)
T 3sfz_A          690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL  769 (1249)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEE
T ss_pred             ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEE
Confidence            9999887654 444443  3  34466655 7889999999999877 78899999999999998  9999999999999


Q ss_pred             EEeccCCcccc--------------------------------------------------Cc-eeecCceeeEEEEEEc
Q 016224          254 WKFNVTTNCFE--------------------------------------------------PA-ASLKGHSLAVVSLVVG  282 (393)
Q Consensus       254 wd~~~~~~~~~--------------------------------------------------~~-~~~~~~~~~v~~l~~~  282 (393)
                      ||+........                                                  .. ....+|...+.+++++
T Consensus       770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s  849 (1249)
T 3sfz_A          770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS  849 (1249)
T ss_dssp             EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC
T ss_pred             EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc
Confidence            99876521100                                                  00 0112566677777775


Q ss_pred             --CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 016224          283 --ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFAT  341 (393)
Q Consensus       283 --~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~  341 (393)
                        +.++++++.|+.|++||+.+++.+..+.+|...|.++.|+  +++|++++.|+.|++||+.
T Consensus       850 p~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          850 PYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK  912 (1249)
T ss_dssp             SSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred             CCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence              5699999999999999999999999999999999999998  6799999999999999864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.7e-30  Score=235.66  Aligned_cols=241  Identities=22%  Similarity=0.320  Sum_probs=198.1

Q ss_pred             EEEEEecCCcCCEEEEEecCC-CCEEEEEeCCCcEEEEECCCCe-----EEEEEecC-CceEEE--EeCCCEEEEE-cCC
Q 016224          141 KLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQ-----CAGVINLG-GEVGCM--ISEGPWIFIG-VTN  210 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~-~~~l~s~s~dg~v~iwd~~~~~-----~~~~~~~~-~~~~~~--~~~~~~l~~~-~~~  210 (393)
                      ++..+|++|.+.|++|+|+|+ +++|+||+.|++|+|||+.+.+     +...+..+ ..+.++  .+++.+++++ .|+
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~  108 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG  108 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence            567789999999999999997 6899999999999999987653     34455443 344443  3678888765 889


Q ss_pred             eEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc----C
Q 016224          211 FVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG----A  283 (393)
Q Consensus       211 ~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~----~  283 (393)
                      .|++|+....... ....+...+..+.+.++  +|++++.|+.+++||+....   .......+|...+..+++.    .
T Consensus       109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~  185 (340)
T 4aow_A          109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC---KYTVQDESHSEWVSCVRFSPNSSN  185 (340)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE---EEEECSSSCSSCEEEEEECSCSSS
T ss_pred             cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc---eEEEEeccccCcccceEEccCCCC
Confidence            9999999998877 66677788888888876  89999999999999987653   3344556788888888875    2


Q ss_pred             CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEE
Q 016224          284 NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLAL  361 (393)
Q Consensus       284 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~  361 (393)
                      .++++++.|+.|++||+++++++..+.+|...|.+++|+  +++|++++.|+.|++||+++.+.+..+..   ...+..+
T Consensus       186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---~~~v~~~  262 (340)
T 4aow_A          186 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG---GDIINAL  262 (340)
T ss_dssp             CEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC---SSCEEEE
T ss_pred             cEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC---CceEEee
Confidence            478999999999999999999999999999999999998  67999999999999999988776655543   3358889


Q ss_pred             EeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          362 CGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       362 ~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      +|+|+..    +++++.|+.|++||++++.
T Consensus       263 ~~~~~~~----~~~~~~d~~i~iwd~~~~~  288 (340)
T 4aow_A          263 CFSPNRY----WLCAATGPSIKIWDLEGKI  288 (340)
T ss_dssp             EECSSSS----EEEEEETTEEEEEETTTTE
T ss_pred             ecCCCCc----eeeccCCCEEEEEECCCCe
Confidence            9887643    6777789999999998764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.9e-31  Score=242.86  Aligned_cols=245  Identities=19%  Similarity=0.209  Sum_probs=201.3

Q ss_pred             cceeecceEEeeEecCc--EEEecCCCeEEEEECCCC-cEEEEEecCCcCCEEEEEecCC--CCEEEEEeCCCcEEEEEC
Q 016224          105 RAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSG--SDKLYSGSKDETVRVWDC  179 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~-~~~~~~l~~h~~~I~~i~~s~~--~~~l~s~s~dg~v~iwd~  179 (393)
                      ...|..+|+|++|++++  +++|+.||.|++||+..+ .+.+..+.+|...|++++|+++  +++|++++.||.|++||+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~   86 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE   86 (379)
T ss_dssp             EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred             ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEc
Confidence            44678899999999764  667889999999999732 2777889999999999999977  899999999999999999


Q ss_pred             CCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEE
Q 016224          180 ASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWK  255 (393)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~----~l~~~~~dg~I~vwd  255 (393)
                      .+++....                                   ..+..|...|.+++|+++    +|++++.|+.|++||
T Consensus        87 ~~~~~~~~-----------------------------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d  131 (379)
T 3jrp_A           87 ENGRWSQI-----------------------------------AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE  131 (379)
T ss_dssp             ETTEEEEE-----------------------------------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred             CCCceeEe-----------------------------------eeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEe
Confidence            88763221                                   134567889999999875    899999999999999


Q ss_pred             eccCCccccCceeecCceeeEEEEEEcC---------------CEEEEecCCCcEEEeeCCCcc----eeeEeccCccce
Q 016224          256 FNVTTNCFEPAASLKGHSLAVVSLVVGA---------------NKLYSGSMDNSIRVWNLETLQ----CIQTLTEHTSVV  316 (393)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~---------------~~l~sg~~dg~i~iwd~~~~~----~~~~~~~~~~~v  316 (393)
                      ++....  .....+..|...|.+++|++               .+|++++.|+.|++||+++++    .+..+..|...|
T Consensus       132 ~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v  209 (379)
T 3jrp_A          132 FKENGT--TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV  209 (379)
T ss_dssp             CCTTSC--CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred             cCCCCc--eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE
Confidence            987643  33445677889999999864               589999999999999998754    556788899999


Q ss_pred             EEEEEc-----CCEEEEEeCCCcEEEEEcCCCcce---EEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          317 MSLLCW-----DQFLLSCSLDKTIKVWFATDSGNL---EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       317 ~~l~~~-----~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      .+++|+     +.+|++++.|+.|++||+.+....   ...........+.+++|+|++.   +|++++.||.|++|++.
T Consensus       210 ~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          210 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN---VLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC---CEEEEESSSSEEEEEEE
T ss_pred             eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCC---EEEEecCCCcEEEEeCC
Confidence            999998     358999999999999999876532   2222223455699999998876   89999999999999987


Q ss_pred             c
Q 016224          389 S  389 (393)
Q Consensus       389 s  389 (393)
                      +
T Consensus       287 ~  287 (379)
T 3jrp_A          287 L  287 (379)
T ss_dssp             E
T ss_pred             C
Confidence            3

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.5e-30  Score=238.15  Aligned_cols=254  Identities=15%  Similarity=0.104  Sum_probs=199.2

Q ss_pred             ccceeecceEEeeEecCc--EEEecCCCeEEEEECCCCc---EEEEEecCCcCCEEEEEecC--CCCEEEEEeCCCcEEE
Q 016224          104 NRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGF---KLLTQLEGHQKVVSGITLPS--GSDKLYSGSKDETVRV  176 (393)
Q Consensus       104 ~~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~---~~~~~l~~h~~~I~~i~~s~--~~~~l~s~s~dg~v~i  176 (393)
                      ....|...|+|++|++++  +++|+.||.|++||+.++.   +.+..+.+|...|++++|+|  ++++|++++.||+|++
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            345688899999999774  6689999999999998652   57788899999999999999  6999999999999999


Q ss_pred             EECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCC-CceeeecCCCCcEEEEEEeCC----EEEEEeCCCcE
Q 016224          177 WDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQT-NTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAI  251 (393)
Q Consensus       177 wd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~-~~~~~~~~~~~~v~~l~~~~~----~l~~~~~dg~I  251 (393)
                      ||+.+++.....                             .. .....+..|...|.+++|+++    +|++++.|+.|
T Consensus        86 wd~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v  136 (351)
T 3f3f_A           86 WEEDPDQEECSG-----------------------------RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGIL  136 (351)
T ss_dssp             EEECTTSCTTSS-----------------------------CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEE
T ss_pred             EecCCCcccccc-----------------------------cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcE
Confidence            999876421000                             00 001245678899999999874    89999999999


Q ss_pred             EEEEeccCCccccCc---------eeecCceeeEEEEEEc-----CCEEEEecCCCcEEEeeCCCcce--eeEeccCccc
Q 016224          252 LAWKFNVTTNCFEPA---------ASLKGHSLAVVSLVVG-----ANKLYSGSMDNSIRVWNLETLQC--IQTLTEHTSV  315 (393)
Q Consensus       252 ~vwd~~~~~~~~~~~---------~~~~~~~~~v~~l~~~-----~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~~~~~  315 (393)
                      ++||++.........         .....|...+.++.++     +++|++++.|+.+.+|+...++.  +..+.+|...
T Consensus       137 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  216 (351)
T 3f3f_A          137 RLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSL  216 (351)
T ss_dssp             EEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSC
T ss_pred             EEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcc
Confidence            999998764321111         1112567788888885     56899999999999998887765  7788899999


Q ss_pred             eEEEEEc--C----CEEEEEeCCCcEEEEEcCCCc---------------------------------------------
Q 016224          316 VMSLLCW--D----QFLLSCSLDKTIKVWFATDSG---------------------------------------------  344 (393)
Q Consensus       316 v~~l~~~--~----~~l~s~s~dg~i~iwd~~~~~---------------------------------------------  344 (393)
                      |.+++|+  +    ++|++++.|+.|++||+++..                                             
T Consensus       217 i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (351)
T 3f3f_A          217 IRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV  296 (351)
T ss_dssp             EEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEE
T ss_pred             eeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccc
Confidence            9999999  3    589999999999999997642                                             


Q ss_pred             -ceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          345 -NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       345 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                       .+..+.  .+...+.+++|+|++.   +|++++.||.|++|++.+++
T Consensus       297 ~~~~~~~--~h~~~v~~~~~s~~~~---~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          297 ELLSEHD--DHNGEVWSVSWNLTGT---ILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             EEEEEEC--TTSSCEEEEEECSSSC---CEEEEETTSCEEEEEECTTS
T ss_pred             cEEEEEe--cccccEEEEEEcCCCC---EEEEecCCCcEEEEecCcCc
Confidence             122222  2345699999998765   89999999999999998753

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.7e-30  Score=237.40  Aligned_cols=273  Identities=18%  Similarity=0.285  Sum_probs=219.0

Q ss_pred             eeecceEEeeEecCcEE--EecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 016224          107 VIKTDILCRNWVQGNCM--YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC  184 (393)
Q Consensus       107 ~~~~~i~c~~~~~~~~~--~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~  184 (393)
                      .+..++.+++|++++..  ++..++.+.+|......+.+. ..+|...|++++|+|++++|++++ ||.|++||+.+++.
T Consensus         7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~   84 (337)
T 1gxr_A            7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQIN-TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN   84 (337)
T ss_dssp             EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEE-EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred             ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccce-eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence            35568999999988544  455666677776665534444 447999999999999999999999 99999999987642


Q ss_pred             ---EEEEe---cCCceEEE--EeCCCEEEEE-cCCeEEEEECCCCce---eeecCCCCcEEEEEEeCC--EEEEEeCCCc
Q 016224          185 ---AGVIN---LGGEVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTD---LSLSGPVGQVYAMAVGND--LLFAGTQDGA  250 (393)
Q Consensus       185 ---~~~~~---~~~~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~---~~~~~~~~~v~~l~~~~~--~l~~~~~dg~  250 (393)
                         +..+.   +...+.++  .+++++++++ .++.|++||+.+++.   ..+..|...|.+++|+++  +|++++.|+.
T Consensus        85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  164 (337)
T 1gxr_A           85 KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN  164 (337)
T ss_dssp             CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCc
Confidence               33332   33445444  3577777765 788999999998872   267789999999999987  8999999999


Q ss_pred             EEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEE
Q 016224          251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFL  326 (393)
Q Consensus       251 I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l  326 (393)
                      |++||+++.    +....+..|...+.+++++  +++|++++.|+.|++||+++++.+..+. +...+.++.|+  +++|
T Consensus       165 v~~~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l  239 (337)
T 1gxr_A          165 IAVWDLHNQ----TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWL  239 (337)
T ss_dssp             EEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEE
T ss_pred             EEEEeCCCC----ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEE
Confidence            999999876    5567778899999999996  5699999999999999999999888875 67789999997  6799


Q ss_pred             EEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          327 LSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       327 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      ++++.|+.|++||+.+.+. ..+..  +...+..+.|+|++.   +|++++.||.|++||+++++.
T Consensus       240 ~~~~~~~~i~~~~~~~~~~-~~~~~--~~~~v~~~~~~~~~~---~l~~~~~dg~i~~~~~~~~~~  299 (337)
T 1gxr_A          240 AVGMESSNVEVLHVNKPDK-YQLHL--HESCVLSLKFAYCGK---WFVSTGKDNLLNAWRTPYGAS  299 (337)
T ss_dssp             EEEETTSCEEEEETTSSCE-EEECC--CSSCEEEEEECTTSS---EEEEEETTSEEEEEETTTCCE
T ss_pred             EEEcCCCcEEEEECCCCCe-EEEcC--CccceeEEEECCCCC---EEEEecCCCcEEEEECCCCeE
Confidence            9999999999999987654 33333  345699999988765   999999999999999988753

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.5e-30  Score=245.90  Aligned_cols=236  Identities=25%  Similarity=0.399  Sum_probs=206.5

Q ss_pred             EecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CceEEEEeCCCEEEEE-cCCeEEEEECCCCce
Q 016224          145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-GEVGCMISEGPWIFIG-VTNFVKAWNTQTNTD  222 (393)
Q Consensus       145 ~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~  222 (393)
                      ...+|...|+++++  ++++|++|+.||+|++||+.+++.+..+..+ ..+.++..++.+++++ .|+.|++||+.+++.
T Consensus       128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~  205 (435)
T 1p22_A          128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEM  205 (435)
T ss_dssp             CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCE
T ss_pred             cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcE
Confidence            34567788999887  7899999999999999999999999888754 5677777788888876 789999999999887


Q ss_pred             e-eecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCC
Q 016224          223 L-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLE  301 (393)
Q Consensus       223 ~-~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~  301 (393)
                      . .+..|...|.++.|+++.+++++.||.|++||+...... .....+.+|...|.++++++++|++++.|+.|++||++
T Consensus       206 ~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~  284 (435)
T 1p22_A          206 LNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI-TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS  284 (435)
T ss_dssp             EEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC-EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETT
T ss_pred             EEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCc-eeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECC
Confidence            7 778899999999999999999999999999999876421 22356778999999999999999999999999999999


Q ss_pred             CcceeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCe
Q 016224          302 TLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNS  381 (393)
Q Consensus       302 ~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~  381 (393)
                      +++++.++.+|...|.++.+++++|++|+.|+.|++||++++..+..+..|..  .+.++.+  +   +.+|++|+.||.
T Consensus       285 ~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~--~---~~~l~sg~~dg~  357 (435)
T 1p22_A          285 TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--D---NKRIVSGAYDGK  357 (435)
T ss_dssp             TCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEC--C---SSEEEEEETTSC
T ss_pred             cCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC--cEEEEEe--c---CCEEEEEeCCCc
Confidence            99999999999999999999999999999999999999998888777766554  4888877  2   338999999999


Q ss_pred             EEEEeCCce
Q 016224          382 VRFYDLPSV  390 (393)
Q Consensus       382 I~iwd~~s~  390 (393)
                      |++||+.++
T Consensus       358 i~vwd~~~~  366 (435)
T 1p22_A          358 IKVWDLVAA  366 (435)
T ss_dssp             EEEEEHHHH
T ss_pred             EEEEECCCC
Confidence            999998654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-30  Score=265.68  Aligned_cols=282  Identities=10%  Similarity=0.083  Sum_probs=206.7

Q ss_pred             eeecceEEeeEecC---cEEEecCCCeEEEEECCCCcEEEEEecCC------------------cCCEEEEEecCCCCEE
Q 016224          107 VIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDGFKLLTQLEGH------------------QKVVSGITLPSGSDKL  165 (393)
Q Consensus       107 ~~~~~i~c~~~~~~---~~~~g~~dg~i~vwd~~~~~~~~~~l~~h------------------~~~I~~i~~s~~~~~l  165 (393)
                      .|..+|.+++|+++   .+++|+.|+.| +||+.++ +.+..+..|                  ...|++++|+|++++|
T Consensus       149 ~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l  226 (902)
T 2oaj_A          149 ARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVEN-EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI  226 (902)
T ss_dssp             SCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTT-EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEE
T ss_pred             cCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCC-ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEE
Confidence            46679999999985   46689999999 9999998 888888766                  5789999999999999


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEEec-------------------CCceEEEE--e----C-CCE----------------
Q 016224          166 YSGSKDETVRVWDCASGQCAGVINL-------------------GGEVGCMI--S----E-GPW----------------  203 (393)
Q Consensus       166 ~s~s~dg~v~iwd~~~~~~~~~~~~-------------------~~~~~~~~--~----~-~~~----------------  203 (393)
                      ++++.||+|++||+.+++++.....                   ...+..+.  +    + +.+                
T Consensus       227 asgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~  306 (902)
T 2oaj_A          227 ITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLT  306 (902)
T ss_dssp             EEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEE
T ss_pred             EEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEE
Confidence            9999999999999988876653110                   01111111  0    0 011                


Q ss_pred             -------------------------------------------------------------EEEEcCCeEEEEECCCCce
Q 016224          204 -------------------------------------------------------------IFIGVTNFVKAWNTQTNTD  222 (393)
Q Consensus       204 -------------------------------------------------------------l~~~~~~~i~v~d~~~~~~  222 (393)
                                                                                   ++.+.++.|++|++.++..
T Consensus       307 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~  386 (902)
T 2oaj_A          307 MIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIF  386 (902)
T ss_dssp             EEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCE
T ss_pred             EEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCc
Confidence                                                                         2223456677777655532


Q ss_pred             e--------eecCCCCcEEEEEE----------------------------------eCC--EEEEEeCCCcEEEEEecc
Q 016224          223 L--------SLSGPVGQVYAMAV----------------------------------GND--LLFAGTQDGAILAWKFNV  258 (393)
Q Consensus       223 ~--------~~~~~~~~v~~l~~----------------------------------~~~--~l~~~~~dg~I~vwd~~~  258 (393)
                      .        .+..|...|+++++                                  +|+  +|++|+.|++|++||+..
T Consensus       387 ~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~  466 (902)
T 2oaj_A          387 TDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASH  466 (902)
T ss_dssp             ECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSC
T ss_pred             ccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCC
Confidence            2        12223344555444                                  565  899999999999999987


Q ss_pred             CCccccCcee--e-----cCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCc--------------------------
Q 016224          259 TTNCFEPAAS--L-----KGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETL--------------------------  303 (393)
Q Consensus       259 ~~~~~~~~~~--~-----~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~--------------------------  303 (393)
                      +.........  +     .+|...|.+++|+  +.+||+|+.||+|+|||+.++                          
T Consensus       467 g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (902)
T 2oaj_A          467 GDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNT  546 (902)
T ss_dssp             CTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGS
T ss_pred             ccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCC
Confidence            6321101111  1     1788899999987  669999999999999999765                          


Q ss_pred             -------------------ceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEE--ee--cCCccE
Q 016224          304 -------------------QCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTY--TH--NEEHGV  358 (393)
Q Consensus       304 -------------------~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~--~~~~~v  358 (393)
                                         +++.++.+|.+.|++++|+  | +||+|+.|++|+|||+++...+....  ..  .+...|
T Consensus       547 ~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V  625 (902)
T 2oaj_A          547 NGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACV  625 (902)
T ss_dssp             SCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCE
T ss_pred             ccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccce
Confidence                               2467888999999999998  6 99999999999999987655432211  11  334569


Q ss_pred             EEEEee-----eCCCCCcEEEEEeCCCeEEEEeC---Ccee
Q 016224          359 LALCGM-----PDSEGKPVLLCSCNDNSVRFYDL---PSVI  391 (393)
Q Consensus       359 ~~~~~~-----~~~~~~~~l~s~s~dg~I~iwd~---~s~~  391 (393)
                      .+++|+     ||+.++++|++|+.|++|++||+   .+|+
T Consensus       626 ~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~  666 (902)
T 2oaj_A          626 TCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK  666 (902)
T ss_dssp             EEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred             EEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence            999999     87655669999999999999999   5553

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=9.2e-30  Score=251.74  Aligned_cols=277  Identities=12%  Similarity=0.130  Sum_probs=219.5

Q ss_pred             cceeecceEEeeEecCc---EEEecCCCeEEEEECCCCcEEEEEecCCcC---CEEEEEecCC-CCEEEEEeCCCcEEEE
Q 016224          105 RAVIKTDILCRNWVQGN---CMYGEKCKFLHSWTVGDGFKLLTQLEGHQK---VVSGITLPSG-SDKLYSGSKDETVRVW  177 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~---~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~---~I~~i~~s~~-~~~l~s~s~dg~v~iw  177 (393)
                      ...|...|.++.|++++   +++++.|+.|++||+.++ +.+..+.+|..   .|++++|+|+ +++|++++.||.|++|
T Consensus       156 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw  234 (615)
T 1pgu_A          156 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF  234 (615)
T ss_dssp             CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEE
T ss_pred             eecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence            34577799999999874   668999999999999988 89999999999   9999999999 9999999999999999


Q ss_pred             ECCCCeEEEEE-----ecCCceEEEEe-CCCEEEEE-cCCeEEEEECCCCcee-eecCC----CCcEEEEEEeC-CEEEE
Q 016224          178 DCASGQCAGVI-----NLGGEVGCMIS-EGPWIFIG-VTNFVKAWNTQTNTDL-SLSGP----VGQVYAMAVGN-DLLFA  244 (393)
Q Consensus       178 d~~~~~~~~~~-----~~~~~~~~~~~-~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~----~~~v~~l~~~~-~~l~~  244 (393)
                      |+.+++.+..+     .+...+..+.. ++.+++++ .|+.|++||+.+++.. .+..+    ...+.++.+.. +++++
T Consensus       235 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  314 (615)
T 1pgu_A          235 DGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS  314 (615)
T ss_dssp             ETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEE
T ss_pred             ECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEE
Confidence            99999999988     44555555443 77777765 7889999999988876 44443    46788888853 39999


Q ss_pred             EeCCCcEEEEEeccCCccccCceeecCc----------------------------------------------------
Q 016224          245 GTQDGAILAWKFNVTTNCFEPAASLKGH----------------------------------------------------  272 (393)
Q Consensus       245 ~~~dg~I~vwd~~~~~~~~~~~~~~~~~----------------------------------------------------  272 (393)
                      ++.|+.|++||+....    +...+.+|                                                    
T Consensus       315 ~~~~g~i~~~d~~~~~----~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~  390 (615)
T 1pgu_A          315 LSLDGTLNFYELGHDE----VLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSIS  390 (615)
T ss_dssp             EETTSCEEEEETTEEE----EEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEE
T ss_pred             EECCCCEEEEECCCCc----EEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEe
Confidence            9999999999987532    11112111                                                    


Q ss_pred             -------------------------------------------------------eeeEEEEEEcCCEEEEecC-CCcEE
Q 016224          273 -------------------------------------------------------SLAVVSLVVGANKLYSGSM-DNSIR  296 (393)
Q Consensus       273 -------------------------------------------------------~~~v~~l~~~~~~l~sg~~-dg~i~  296 (393)
                                                                             ...+.++++++++|++++. |+.|+
T Consensus       391 ~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~  470 (615)
T 1pgu_A          391 WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQ  470 (615)
T ss_dssp             TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEE
T ss_pred             CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEE
Confidence                                                                   2233444444566777777 78888


Q ss_pred             EeeCCCccee-eEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeee--------
Q 016224          297 VWNLETLQCI-QTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMP--------  365 (393)
Q Consensus       297 iwd~~~~~~~-~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--------  365 (393)
                      +||+.+++.. ..+..|...|.+++|+  +++|++++.|+.|++||+.+++.+..+.. .+...+.+++|+|        
T Consensus       471 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~~  549 (615)
T 1pgu_A          471 VFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA-FRTSKINAISWKPAEKGANEE  549 (615)
T ss_dssp             EEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC-CCSSCEEEEEECCCC------
T ss_pred             EEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec-CCCCceeEEEEcCcccccccc
Confidence            8888776655 6677899999999997  77999999999999999988776655444 1345699999998        


Q ss_pred             --CCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          366 --DSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       366 --~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                        +..   +|++++.||.|++||+.++
T Consensus       550 ~~~~~---~l~~~~~dg~i~iw~~~~~  573 (615)
T 1pgu_A          550 EIEED---LVATGSLDTNIFIYSVKRP  573 (615)
T ss_dssp             CCSCC---EEEEEETTSCEEEEESSCT
T ss_pred             ccCCC---EEEEEcCCCcEEEEECCCC
Confidence              554   9999999999999999876

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.98  E-value=1.5e-29  Score=250.27  Aligned_cols=276  Identities=16%  Similarity=0.193  Sum_probs=224.5

Q ss_pred             eecceEEeeEecCc-EEEecCCCeEEEEECCCCc---EEEEEecCCcCC-EEEEEecC--CCCEEEEEeCCCcEEEEECC
Q 016224          108 IKTDILCRNWVQGN-CMYGEKCKFLHSWTVGDGF---KLLTQLEGHQKV-VSGITLPS--GSDKLYSGSKDETVRVWDCA  180 (393)
Q Consensus       108 ~~~~i~c~~~~~~~-~~~g~~dg~i~vwd~~~~~---~~~~~l~~h~~~-I~~i~~s~--~~~~l~s~s~dg~v~iwd~~  180 (393)
                      |...|.+++|++++ .++.+.++.|++||+.++.   +.+..+.+|... |++++|+|  ++++|++++.||+|++||+.
T Consensus        17 ~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~   96 (615)
T 1pgu_A           17 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT   96 (615)
T ss_dssp             CTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred             ccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCC
Confidence            45688999999874 3433338999999998651   467789999999 99999999  99999999999999999997


Q ss_pred             CC--------eEEEEEec-CCceEEE--EeCCCEEEEEc-C----CeEEEEECCCCceeeecCCCCcEEEEEEeCC---E
Q 016224          181 SG--------QCAGVINL-GGEVGCM--ISEGPWIFIGV-T----NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---L  241 (393)
Q Consensus       181 ~~--------~~~~~~~~-~~~~~~~--~~~~~~l~~~~-~----~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~  241 (393)
                      ++        +....+.. ...+..+  .+++++++++. +    +.|.+||. ......+..|...|.+++|+|+   +
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~-~~~~~~~~~~~~~v~~~~~~~~~~~~  175 (615)
T 1pgu_A           97 FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS-GNSLGEVSGHSQRINACHLKQSRPMR  175 (615)
T ss_dssp             EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT-CCEEEECCSCSSCEEEEEECSSSSCE
T ss_pred             CCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC-CCcceeeecCCccEEEEEECCCCCcE
Confidence            54        55566653 3444443  36888888764 3    47888882 2333478899999999999998   7


Q ss_pred             EEEEeCCCcEEEEEeccCCccccCceeecCcee---eEEEEEEc---CCEEEEecCCCcEEEeeCCCcceeeEe-c---c
Q 016224          242 LFAGTQDGAILAWKFNVTTNCFEPAASLKGHSL---AVVSLVVG---ANKLYSGSMDNSIRVWNLETLQCIQTL-T---E  311 (393)
Q Consensus       242 l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~---~v~~l~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~-~---~  311 (393)
                      |++++.|+.|++||+...    +....+..|..   .|.+++++   +++|++++.|+.|++||+++++.+..+ .   .
T Consensus       176 l~~~~~d~~v~vwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  251 (615)
T 1pgu_A          176 SMTVGDDGSVVFYQGPPF----KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP  251 (615)
T ss_dssp             EEEEETTTEEEEEETTTB----EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBC
T ss_pred             EEEEeCCCcEEEEeCCCc----ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccc
Confidence            999999999999998776    55677888888   99999986   558999999999999999999999999 6   8


Q ss_pred             CccceEEEEEc-CCEEEEEeCCCcEEEEEcCCCcceEEEEeec--CCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          312 HTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHN--EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       312 ~~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      |...|.++.|+ +++|++++.|+.|++||+.+.+.+..+..+.  ....+..+.+. +..   +|++++.||.|++||+.
T Consensus       252 ~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~l~~~~~~g~i~~~d~~  327 (615)
T 1pgu_A          252 VQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNG---RIISLSLDGTLNFYELG  327 (615)
T ss_dssp             CCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETT---EEEEEETTSCEEEEETT
T ss_pred             cCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCC---eEEEEECCCCEEEEECC
Confidence            99999999995 7799999999999999999887776666542  12346677764 333   89999999999999998


Q ss_pred             ceee
Q 016224          389 SVII  392 (393)
Q Consensus       389 s~~l  392 (393)
                      +++.
T Consensus       328 ~~~~  331 (615)
T 1pgu_A          328 HDEV  331 (615)
T ss_dssp             EEEE
T ss_pred             CCcE
Confidence            8654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=1.8e-29  Score=233.58  Aligned_cols=276  Identities=12%  Similarity=0.128  Sum_probs=209.5

Q ss_pred             ceeecceEEeeEecCc-EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEE-EEEeCCCcEEEEECCCCe
Q 016224          106 AVIKTDILCRNWVQGN-CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKL-YSGSKDETVRVWDCASGQ  183 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~~-~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l-~s~s~dg~v~iwd~~~~~  183 (393)
                      ..|...|.|++|++++ .++.+.+..++||++.+. +.+.....+  .+..+++.++++.+ ++++.|++|++||+.+++
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~   92 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPV-AHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ   92 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECSSEEEEEEETTE-EEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEETTTTE
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCc-ceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEECCCCc
Confidence            4577899999999874 444444456889999876 555444322  47778888888877 567788999999999999


Q ss_pred             EEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCC-cee-eecCCCCcEEEEEEeCCEEEE--EeCCCcEEEEEeccC
Q 016224          184 CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN-TDL-SLSGPVGQVYAMAVGNDLLFA--GTQDGAILAWKFNVT  259 (393)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~-~~~-~~~~~~~~v~~l~~~~~~l~~--~~~dg~I~vwd~~~~  259 (393)
                      .+..+.....+..+......++++.++.|++||+.+. +.+ .+..   ....+++++.++++  |+.||.|++||+...
T Consensus        93 ~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~  169 (355)
T 3vu4_A           93 DVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSNGLLVYSNEFNLGQIHITKLQSS  169 (355)
T ss_dssp             EEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEETTEEEEEESSCTTCEEEEECCC-
T ss_pred             EEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEccEEEEeCCCcCcEEEEEECCCC
Confidence            9999998888888888888888888999999999988 444 2222   44456667786666  589999999999875


Q ss_pred             Cc-----------cccC-ceeecCceeeEEEEEEc--CCEEEEecCCCc-EEEeeCCCcceeeEec-c-CccceEEEEEc
Q 016224          260 TN-----------CFEP-AASLKGHSLAVVSLVVG--ANKLYSGSMDNS-IRVWNLETLQCIQTLT-E-HTSVVMSLLCW  322 (393)
Q Consensus       260 ~~-----------~~~~-~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~-i~iwd~~~~~~~~~~~-~-~~~~v~~l~~~  322 (393)
                      ..           ...+ ...+.+|...|.+++|+  +++|++++.|++ |++||+++++++.++. + |...|.+++|+
T Consensus       170 ~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s  249 (355)
T 3vu4_A          170 GSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWS  249 (355)
T ss_dssp             -----------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEEC
T ss_pred             CccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEEC
Confidence            31           0112 67788999999999996  569999999998 9999999999999998 5 99999999998


Q ss_pred             --CCEEEEEeCCCcEEEEEcCCCcceE--EE------------------E-eecCCccEEEEEeeeCCCCCcEEEEEeCC
Q 016224          323 --DQFLLSCSLDKTIKVWFATDSGNLE--VT------------------Y-THNEEHGVLALCGMPDSEGKPVLLCSCND  379 (393)
Q Consensus       323 --~~~l~s~s~dg~i~iwd~~~~~~~~--~~------------------~-~~~~~~~v~~~~~~~~~~~~~~l~s~s~d  379 (393)
                        +++|++++.|++|+|||+.......  .+                  . ..........++|++++.   +|++++.|
T Consensus       250 ~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~---~l~~~~~d  326 (355)
T 3vu4_A          250 TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS---LVVVWPHT  326 (355)
T ss_dssp             TTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE---EEEEETTT
T ss_pred             CCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCC---EEEEEeCC
Confidence              6799999999999999997653211  10                  0 000111224577877655   89999999


Q ss_pred             CeEEEEeCCce
Q 016224          380 NSVRFYDLPSV  390 (393)
Q Consensus       380 g~I~iwd~~s~  390 (393)
                      |.+++|++..+
T Consensus       327 g~~~~~~~~~~  337 (355)
T 3vu4_A          327 RMIETFKVVFD  337 (355)
T ss_dssp             TEEEEEEEEEE
T ss_pred             CeEEEEEEEcC
Confidence            99999998764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.98  E-value=1.2e-30  Score=242.40  Aligned_cols=270  Identities=12%  Similarity=0.102  Sum_probs=200.2

Q ss_pred             cceEEeeEecCcEE--EecC-------CCeEEEEECCCCc-------E--EEEEecCCcCCEEEEEecCCCCEEEEE---
Q 016224          110 TDILCRNWVQGNCM--YGEK-------CKFLHSWTVGDGF-------K--LLTQLEGHQKVVSGITLPSGSDKLYSG---  168 (393)
Q Consensus       110 ~~i~c~~~~~~~~~--~g~~-------dg~i~vwd~~~~~-------~--~~~~l~~h~~~I~~i~~s~~~~~l~s~---  168 (393)
                      .||+|++|++++.+  +|+.       ++.|++|++..+.       .  ....|.+|...|.+++++  ++.+++|   
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~   92 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE   92 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence            38999999988543  4433       3369999987541       1  123577899999888775  4566665   


Q ss_pred             --------eCCCcEEEEECCCCeE-E---EEEecC------C--ceEEEEeCCCEEEEE---cCCeEEEEECCCCceeee
Q 016224          169 --------SKDETVRVWDCASGQC-A---GVINLG------G--EVGCMISEGPWIFIG---VTNFVKAWNTQTNTDLSL  225 (393)
Q Consensus       169 --------s~dg~v~iwd~~~~~~-~---~~~~~~------~--~~~~~~~~~~~l~~~---~~~~i~v~d~~~~~~~~~  225 (393)
                              +.|+++++|++.+... +   ......      .  ...++.+++++++++   .|+.|++||+++++.+..
T Consensus        93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~  172 (365)
T 4h5i_A           93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE  172 (365)
T ss_dssp             CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred             CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence                    4578899999865432 1   111111      1  134556788887643   578999999999998866


Q ss_pred             cCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCC----cEEE
Q 016224          226 SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDN----SIRV  297 (393)
Q Consensus       226 ~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg----~i~i  297 (393)
                      ..|...|.+++|+|+  +|++++ ++.+.+|+..++..  ........|...|.+++|+  +.++++++.|+    .+++
T Consensus       173 ~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~  249 (365)
T 4h5i_A          173 IETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSC--IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTK  249 (365)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCE--EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEE
T ss_pred             eCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcc--eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEee
Confidence            668889999999998  777776 55667777666532  2223445688888888875  56899988877    6888


Q ss_pred             eeCCCcce----eeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEE-eecCCccEEEEEeeeCCCCC
Q 016224          298 WNLETLQC----IQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTY-THNEEHGVLALCGMPDSEGK  370 (393)
Q Consensus       298 wd~~~~~~----~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~  370 (393)
                      ||+.....    ...+..|...|++++|+  +++|++|+.|++|+|||+.+++.+..+. .|.  ..|.+++|+|++.  
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~--~~V~~v~fSpdg~--  325 (365)
T 4h5i_A          250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHS--FAITEVTISPDST--  325 (365)
T ss_dssp             EEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSS--SCEEEEEECTTSC--
T ss_pred             cccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCccc--CCEEEEEECCCCC--
Confidence            99876543    45677899999999998  6799999999999999999887766543 344  4599999999876  


Q ss_pred             cEEEEEeCCCeEEEEeCCc
Q 016224          371 PVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       371 ~~l~s~s~dg~I~iwd~~s  389 (393)
                       +|+++|.|++|+||++++
T Consensus       326 -~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          326 -YVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             -EEEEEETTSEEEEEECCT
T ss_pred             -EEEEEeCCCeEEEEEcCC
Confidence             999999999999999975

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.98  E-value=7e-29  Score=224.33  Aligned_cols=243  Identities=24%  Similarity=0.363  Sum_probs=202.9

Q ss_pred             ECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CceEE--EEeCCCEEEEE-cCC
Q 016224          135 TVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-GEVGC--MISEGPWIFIG-VTN  210 (393)
Q Consensus       135 d~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~~~~--~~~~~~~l~~~-~~~  210 (393)
                      |..+++++.+++.+|...|++++| +++++|++++.||.|++||+.+++....+..+ ..+.+  +.+++.+++++ .++
T Consensus         3 d~~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg   81 (313)
T 3odt_A            3 DPFTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDT   81 (313)
T ss_dssp             --CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTS
T ss_pred             CccccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCC
Confidence            445566899999999999999999 99999999999999999999999888777654 34433  44678888775 888


Q ss_pred             eEEEEECCCCc----eeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEE---cC
Q 016224          211 FVKAWNTQTNT----DLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV---GA  283 (393)
Q Consensus       211 ~i~v~d~~~~~----~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~---~~  283 (393)
                      .|++|++....    ...+..|...|.++.|++++|++++.|+.|++||  ..    .....+..|...+.++.+   ++
T Consensus        82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~----~~~~~~~~~~~~v~~~~~~~~~~  155 (313)
T 3odt_A           82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EG----SLVYNLQAHNASVWDAKVVSFSE  155 (313)
T ss_dssp             CEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TT----EEEEEEECCSSCEEEEEEEETTT
T ss_pred             eEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CC----cEEEecccCCCceeEEEEccCCC
Confidence            99999987653    3377889999999999888999999999999999  22    456677788889988877   57


Q ss_pred             CEEEEecCCCcEEEeeCCCcceeeEecc-CccceEEEEEc-CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEE
Q 016224          284 NKLYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLAL  361 (393)
Q Consensus       284 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~  361 (393)
                      +++++++.|+.|++||  ..+.+..+.. |...+.++.++ ...+++++.|+.|++||+++.+.+..+..|..  .+.++
T Consensus       156 ~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~  231 (313)
T 3odt_A          156 NKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHES--FVYCI  231 (313)
T ss_dssp             TEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEE
T ss_pred             CEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCc--eEEEE
Confidence            7999999999999999  4566777777 89999999998 44599999999999999998887777766554  59999


Q ss_pred             EeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          362 CGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       362 ~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      +|+|++    .|++++.||.|++||+.++++
T Consensus       232 ~~~~~~----~l~~~~~dg~v~iwd~~~~~~  258 (313)
T 3odt_A          232 KLLPNG----DIVSCGEDRTVRIWSKENGSL  258 (313)
T ss_dssp             EECTTS----CEEEEETTSEEEEECTTTCCE
T ss_pred             EEecCC----CEEEEecCCEEEEEECCCCce
Confidence            998865    388999999999999988754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.3e-30  Score=244.98  Aligned_cols=250  Identities=13%  Similarity=0.217  Sum_probs=199.0

Q ss_pred             EEECCCCcEEEEEe-cCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECCC---Ce---EEEEEecCCceEEEE--eCCC
Q 016224          133 SWTVGDGFKLLTQL-EGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCAS---GQ---CAGVINLGGEVGCMI--SEGP  202 (393)
Q Consensus       133 vwd~~~~~~~~~~l-~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~~---~~---~~~~~~~~~~~~~~~--~~~~  202 (393)
                      .|+. ++ +++..+ .+|.+.|++++|+| ++++|++|+.||+|+|||+.+   +.   ....+.+...+.++.  +++.
T Consensus        47 ~w~~-~g-~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  124 (437)
T 3gre_A           47 MGNL-RG-KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFD  124 (437)
T ss_dssp             GGGC-CC-CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSS
T ss_pred             cccc-cc-eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCC
Confidence            3874 45 677888 89999999999999 999999999999999999876   32   345555666666654  4677


Q ss_pred             EEEEE-cCCeEEEEECC---CCceee-----------ecC--CCCcEEEEEE--eCC--EEEEEeCCCcEEEEEeccCCc
Q 016224          203 WIFIG-VTNFVKAWNTQ---TNTDLS-----------LSG--PVGQVYAMAV--GND--LLFAGTQDGAILAWKFNVTTN  261 (393)
Q Consensus       203 ~l~~~-~~~~i~v~d~~---~~~~~~-----------~~~--~~~~v~~l~~--~~~--~l~~~~~dg~I~vwd~~~~~~  261 (393)
                      +++++ .|+.|++||+.   .++...           +..  +...+.++.+  +++  +|++++.|+.|++||+++.  
T Consensus       125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--  202 (437)
T 3gre_A          125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL--  202 (437)
T ss_dssp             EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC--
T ss_pred             EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--
Confidence            77765 88999999995   443321           111  5566777774  344  9999999999999999886  


Q ss_pred             cccCceeecC--ceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEec-cCccceEEEEEcC------CEEEEEe
Q 016224          262 CFEPAASLKG--HSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLT-EHTSVVMSLLCWD------QFLLSCS  330 (393)
Q Consensus       262 ~~~~~~~~~~--~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~------~~l~s~s  330 (393)
                        +.+..+..  |...|.+++++  +++|++|+.||.|++||+++++++.++. .|...|.++.+.+      .+|++++
T Consensus       203 --~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~  280 (437)
T 3gre_A          203 --ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS  280 (437)
T ss_dssp             --CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEES
T ss_pred             --eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEc
Confidence              55666666  88999999996  5689999999999999999999999986 7888999997763      3899999


Q ss_pred             CCCcEEEEEcCCCcceEEEEeec------------------------CCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          331 LDKTIKVWFATDSGNLEVTYTHN------------------------EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       331 ~dg~i~iwd~~~~~~~~~~~~~~------------------------~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                      .|+.|++||+++++.+..+..+.                        +...+.+++|+ +.   ++|++++.|+.|++||
T Consensus       281 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~---~~l~s~~~d~~i~~wd  356 (437)
T 3gre_A          281 SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND---KILLTDEATSSIVMFS  356 (437)
T ss_dssp             TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT---EEEEEEGGGTEEEEEE
T ss_pred             CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc---eEEEecCCCCeEEEEE
Confidence            99999999999888777776543                        23347777877 33   3899999999999999


Q ss_pred             CCceee
Q 016224          387 LPSVII  392 (393)
Q Consensus       387 ~~s~~l  392 (393)
                      +.+++.
T Consensus       357 ~~~~~~  362 (437)
T 3gre_A          357 LNELSS  362 (437)
T ss_dssp             TTCGGG
T ss_pred             CCCccc
Confidence            988753

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=3e-29  Score=229.99  Aligned_cols=243  Identities=14%  Similarity=0.113  Sum_probs=201.8

Q ss_pred             EEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe----EEEEEecCCceEEE--EeCCC-EEEEE-cCCeEE
Q 016224          142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ----CAGVINLGGEVGCM--ISEGP-WIFIG-VTNFVK  213 (393)
Q Consensus       142 ~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~~~~~--~~~~~-~l~~~-~~~~i~  213 (393)
                      .+....+|.+.|++++|+|++++|++++.|+.|++||+.+++    ......+...+.++  .+++. +++++ .++.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   82 (342)
T 1yfq_A            3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             ceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence            444557899999999999999999999999999999998877    55555555555544  46788 66665 789999


Q ss_pred             EEEC-CCCceeeecC--CCCcEEEEEEeCC-EEEEEeCCCcEEEEEecc---------CCccccCceeecCceeeEEEEE
Q 016224          214 AWNT-QTNTDLSLSG--PVGQVYAMAVGND-LLFAGTQDGAILAWKFNV---------TTNCFEPAASLKGHSLAVVSLV  280 (393)
Q Consensus       214 v~d~-~~~~~~~~~~--~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~---------~~~~~~~~~~~~~~~~~v~~l~  280 (393)
                      +|++ .+++...+..  |...|.+++|++. +|++++.|+.|++||++.         .    +++..+. |...+.+++
T Consensus        83 ~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~-~~~~v~~~~  157 (342)
T 1yfq_A           83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKN----LNSNNTK-VKNKIFTMD  157 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEE----SCSSSSS-SCCCEEEEE
T ss_pred             EEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccC----CeeeEEe-eCCceEEEE
Confidence            9999 9988888888  9999999999964 999999999999999986         4    3344444 888999999


Q ss_pred             EcCCEEEEecCCCcEEEeeCCC-cce--eeEeccCccceEEEEEcC---CEEEEEeCCCcEEEEEcCCC------cceEE
Q 016224          281 VGANKLYSGSMDNSIRVWNLET-LQC--IQTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVWFATDS------GNLEV  348 (393)
Q Consensus       281 ~~~~~l~sg~~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~l~~~~---~~l~s~s~dg~i~iwd~~~~------~~~~~  348 (393)
                      ++++.+++++.|+.|++||+++ +..  ......|...+.++.|++   ++|++++.||.|++|++...      .....
T Consensus       158 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~  237 (342)
T 1yfq_A          158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA  237 (342)
T ss_dssp             ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred             ecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence            9998899999999999999998 543  334556888999999974   69999999999999999876      55666


Q ss_pred             EEeecC-------CccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          349 TYTHNE-------EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       349 ~~~~~~-------~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      +..+..       ...+.+++|+|++.   +|++++.||.|++||+.++++
T Consensus       238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~---~l~~~~~dg~i~vwd~~~~~~  285 (342)
T 1yfq_A          238 FRCHRLNLKDTNLAYPVNSIEFSPRHK---FLYTAGSDGIISCWNLQTRKK  285 (342)
T ss_dssp             EECCCCCTTCCSSCCCEEEEEECTTTC---CEEEEETTSCEEEEETTTTEE
T ss_pred             eecccccccccccceeEEEEEEcCCCC---EEEEecCCceEEEEcCccHhH
Confidence            666543       33699999988765   899999999999999998764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=4.4e-30  Score=237.36  Aligned_cols=233  Identities=16%  Similarity=0.203  Sum_probs=193.2

Q ss_pred             eecceEEeeEecC------cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECC
Q 016224          108 IKTDILCRNWVQG------NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCA  180 (393)
Q Consensus       108 ~~~~i~c~~~~~~------~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~  180 (393)
                      |...|++++|+++      .+++|+.||.|++||+.++ +.+..+.+|...|++++|+| ++++|++++.||.|++||+.
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~  146 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM-QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ  146 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC-CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc-eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence            4568999999987      4678999999999999998 88889999999999999999 99999999999999999999


Q ss_pred             CCeEEEEEe----cCCceEEEE--eCCCEEEEE-cCCeEEEEECCCCcee-e----------------------------
Q 016224          181 SGQCAGVIN----LGGEVGCMI--SEGPWIFIG-VTNFVKAWNTQTNTDL-S----------------------------  224 (393)
Q Consensus       181 ~~~~~~~~~----~~~~~~~~~--~~~~~l~~~-~~~~i~v~d~~~~~~~-~----------------------------  224 (393)
                      +++.+..+.    +...+.++.  +++.+++++ .|+.|++||+++++.. .                            
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (366)
T 3k26_A          147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST  226 (366)
T ss_dssp             TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEE
T ss_pred             cCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccc
Confidence            999998882    445555544  567777765 7899999999987643 1                            


Q ss_pred             ecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccc----------cCceeecCceeeEEEEEE--c--CCEEEEec
Q 016224          225 LSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCF----------EPAASLKGHSLAVVSLVV--G--ANKLYSGS  290 (393)
Q Consensus       225 ~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~----------~~~~~~~~~~~~v~~l~~--~--~~~l~sg~  290 (393)
                      ...|...|.+++|++++|++++.|+.|++||+.......          ..+..+..|...|.++++  +  +++|++++
T Consensus       227 ~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~  306 (366)
T 3k26_A          227 RDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN  306 (366)
T ss_dssp             CSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC
T ss_pred             ccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe
Confidence            223889999999998899999999999999998764311          224455667666666655  4  77999999


Q ss_pred             CCCcEEEeeCCCccee----eEeccC--ccceEEEEEc--CCEEEEEeCCCcEEEEEcC
Q 016224          291 MDNSIRVWNLETLQCI----QTLTEH--TSVVMSLLCW--DQFLLSCSLDKTIKVWFAT  341 (393)
Q Consensus       291 ~dg~i~iwd~~~~~~~----~~~~~~--~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~  341 (393)
                      .||.|++||+++++++    ..+..|  ...|.+++|+  +++|++++.||.|++||+.
T Consensus       307 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          307 QVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             TTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            9999999999987643    477777  7899999998  6799999999999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=1.2e-29  Score=236.89  Aligned_cols=247  Identities=15%  Similarity=0.198  Sum_probs=200.1

Q ss_pred             EECCCCcEEEEEecCCcCCEEEEEecCCC-CEEEEEeCCCcEEEEECCCCeEEEEEe---cCCceEEEE--e-CCCEEEE
Q 016224          134 WTVGDGFKLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETVRVWDCASGQCAGVIN---LGGEVGCMI--S-EGPWIFI  206 (393)
Q Consensus       134 wd~~~~~~~~~~l~~h~~~I~~i~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~~~~~~--~-~~~~l~~  206 (393)
                      |++... +....+.+|...|++++|+|++ ++|++|+.||.|+|||+.+++....+.   +...+.++.  + ++.++++
T Consensus        58 ~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  136 (383)
T 3ei3_B           58 RSLKSY-KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFV  136 (383)
T ss_dssp             HHHTTC-EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEE
T ss_pred             cccccc-ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEE
Confidence            444554 7888999999999999999998 999999999999999999988887776   344555443  4 4566665


Q ss_pred             E-cCCeEEEEECCCCceeeecC---CCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEE
Q 016224          207 G-VTNFVKAWNTQTNTDLSLSG---PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLV  280 (393)
Q Consensus       207 ~-~~~~i~v~d~~~~~~~~~~~---~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~  280 (393)
                      + .|+.|++||+.+.....+..   +...|.+++|+++  +|++++.|+.|++||++.     +....+..|...|.+++
T Consensus       137 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~h~~~v~~~~  211 (383)
T 3ei3_B          137 SSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG-----HEIFKEKLHKAKVTHAE  211 (383)
T ss_dssp             EETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS-----CEEEEEECSSSCEEEEE
T ss_pred             EeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC-----CEEEEeccCCCcEEEEE
Confidence            5 88999999999766555544   4488999999998  999999999999999842     45677888999999999


Q ss_pred             EcC--C-EEEEecCCCcEEEeeCCC----cceeeEeccCccceEEEEEcC---CEEEEEeCCCcEEEEEcCCCcceEEEE
Q 016224          281 VGA--N-KLYSGSMDNSIRVWNLET----LQCIQTLTEHTSVVMSLLCWD---QFLLSCSLDKTIKVWFATDSGNLEVTY  350 (393)
Q Consensus       281 ~~~--~-~l~sg~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~l~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~  350 (393)
                      |++  . +|++++.|+.|++||+++    ++++..+ .|...|.+++|++   ++|++++.|+.|++||+++......+.
T Consensus       212 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  290 (383)
T 3ei3_B          212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII  290 (383)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred             ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence            974  3 899999999999999998    6666666 6999999999975   799999999999999999887766666


Q ss_pred             eecC---------------CccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          351 THNE---------------EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       351 ~~~~---------------~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      .+..               ...+..++++|++.   +  +++.|+.|++||+.++++
T Consensus       291 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~---~--s~s~d~~i~iwd~~~~~~  342 (383)
T 3ei3_B          291 IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ---L--LLNDKRTIDIYDANSGGL  342 (383)
T ss_dssp             ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT---T--CTTCCCCEEEEETTTCCE
T ss_pred             cccccccccccceEEeccCCCCceEEEecCCcc---c--ccCCCCeEEEEecCCCce
Confidence            4431               12345566666544   3  778999999999988764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=4.6e-29  Score=233.60  Aligned_cols=247  Identities=14%  Similarity=0.129  Sum_probs=200.2

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe------EEEEEec-CCceEEE--EeC----C---CEE
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ------CAGVINL-GGEVGCM--ISE----G---PWI  204 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~------~~~~~~~-~~~~~~~--~~~----~---~~l  204 (393)
                      .....+.+|...|++|+|+|  ++|++++.||+|++||+.+++      .+..+.. ...+.++  .++    +   .+|
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence            45667889999999999998  799999999999999999887      5555554 3445443  356    6   677


Q ss_pred             EEE-cCCeEEEEECCCCc------eeeecCC-----CCcEEEEEEe----CC--E-EEEEeCCCcEEEEEecc------C
Q 016224          205 FIG-VTNFVKAWNTQTNT------DLSLSGP-----VGQVYAMAVG----ND--L-LFAGTQDGAILAWKFNV------T  259 (393)
Q Consensus       205 ~~~-~~~~i~v~d~~~~~------~~~~~~~-----~~~v~~l~~~----~~--~-l~~~~~dg~I~vwd~~~------~  259 (393)
                      +++ .++.|++|++.+++      ...+..|     ...|.+++|+    ++  + |++++.||.|++||+..      .
T Consensus        85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  164 (397)
T 1sq9_A           85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  164 (397)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence            765 78999999999887      4477777     5999999999    76  7 99999999999999997      4


Q ss_pred             Ccc-ccCceee-------cCceeeEEEEEEcCC-EEEEecCCCcEEEeeCCCcceeeEecc---C---ccceEEEEEc--
Q 016224          260 TNC-FEPAASL-------KGHSLAVVSLVVGAN-KLYSGSMDNSIRVWNLETLQCIQTLTE---H---TSVVMSLLCW--  322 (393)
Q Consensus       260 ~~~-~~~~~~~-------~~~~~~v~~l~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~---~---~~~v~~l~~~--  322 (393)
                      ... +.+...+       ..|...|.+++++++ +|++++.|+.|++||+++++.+..+..   |   ...|.+++|+  
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~  244 (397)
T 1sq9_A          165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ  244 (397)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred             ceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCC
Confidence            221 1111144       457888999998733 999999999999999999999999998   9   9999999997  


Q ss_pred             CCEEEEEeCC---CcEEEEEcCCCcceEEEEeec-----------CCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          323 DQFLLSCSLD---KTIKVWFATDSGNLEVTYTHN-----------EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       323 ~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      +++|++++.|   +.|++||+++.+.+..+....           +...+.+++|+|++.   +|++++.||.|++||+.
T Consensus       245 ~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~  321 (397)
T 1sq9_A          245 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE---TLCSAGWDGKLRFWDVK  321 (397)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS---EEEEEETTSEEEEEETT
T ss_pred             CCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCC---EEEEEeCCCeEEEEEcC
Confidence            6799999999   999999999887777666510           344699999988765   99999999999999998


Q ss_pred             ceee
Q 016224          389 SVII  392 (393)
Q Consensus       389 s~~l  392 (393)
                      ++++
T Consensus       322 ~~~~  325 (397)
T 1sq9_A          322 TKER  325 (397)
T ss_dssp             TTEE
T ss_pred             CCce
Confidence            8764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=1.1e-29  Score=238.79  Aligned_cols=271  Identities=17%  Similarity=0.192  Sum_probs=211.0

Q ss_pred             eEEeeEecCcEE---EecCCCeEEEEECCCCcE---EEEEecCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECCCC--
Q 016224          112 ILCRNWVQGNCM---YGEKCKFLHSWTVGDGFK---LLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASG--  182 (393)
Q Consensus       112 i~c~~~~~~~~~---~g~~dg~i~vwd~~~~~~---~~~~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~~~--  182 (393)
                      ..+++++++...   +++.||.|+||++.+..+   .+..+.+|...|++++|+| ++++|++|+.||+|+|||+.++  
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~  116 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL  116 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence            345677777544   378899999999865422   3446789999999999999 9999999999999999999987  


Q ss_pred             -----eEEEEEecC-CceEEEE--eCC-CEEEE-EcCCeEEEEECCCCcee-ee--cCCCCcEEEEEEeCC--EEEEEeC
Q 016224          183 -----QCAGVINLG-GEVGCMI--SEG-PWIFI-GVTNFVKAWNTQTNTDL-SL--SGPVGQVYAMAVGND--LLFAGTQ  247 (393)
Q Consensus       183 -----~~~~~~~~~-~~~~~~~--~~~-~~l~~-~~~~~i~v~d~~~~~~~-~~--~~~~~~v~~l~~~~~--~l~~~~~  247 (393)
                           +.+..+..+ ..+.++.  +++ .++++ +.|+.|++||+.+++.. .+  ..|...|.+++|+++  +|++++.
T Consensus       117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  196 (402)
T 2aq5_A          117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR  196 (402)
T ss_dssp             SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred             ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence                 456666644 4454443  455 46665 48899999999998877 55  679999999999987  8999999


Q ss_pred             CCcEEEEEeccCCccccCceee-cCceee-EEEEEEc--CCEEEEe---cCCCcEEEeeCCCcce-eeEec-cCccceEE
Q 016224          248 DGAILAWKFNVTTNCFEPAASL-KGHSLA-VVSLVVG--ANKLYSG---SMDNSIRVWNLETLQC-IQTLT-EHTSVVMS  318 (393)
Q Consensus       248 dg~I~vwd~~~~~~~~~~~~~~-~~~~~~-v~~l~~~--~~~l~sg---~~dg~i~iwd~~~~~~-~~~~~-~~~~~v~~  318 (393)
                      |+.|++||++.+    +.+..+ ..|... +.++.|+  +.+|++|   +.|+.|++||+++++. +.... .|...+.+
T Consensus       197 d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~  272 (402)
T 2aq5_A          197 DKRVRVIEPRKG----TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLL  272 (402)
T ss_dssp             TSEEEEEETTTT----EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEE
T ss_pred             CCcEEEEeCCCC----ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeE
Confidence            999999999886    445555 567654 6777775  5578888   7999999999998664 33333 46778999


Q ss_pred             EEEc--CCEEE-EEeCCCcEEEEEcCCCcc-eEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          319 LLCW--DQFLL-SCSLDKTIKVWFATDSGN-LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       319 l~~~--~~~l~-s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      +.|+  +++|+ +++.|+.|++||+.+.+. +..+..+.....+.+++|+|+..   +++  +.++.+++|++.+++
T Consensus       273 ~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~---~~~--s~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          273 PFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRG---LEV--NKCEIARFYKLHERK  344 (402)
T ss_dssp             EEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGG---SCG--GGTEEEEEEEEETTE
T ss_pred             EEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccc---cce--ecceeEEEEEcCCCc
Confidence            9998  56775 566799999999988775 66666666566799999998765   555  357799999998754

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-28  Score=234.84  Aligned_cols=271  Identities=15%  Similarity=0.159  Sum_probs=210.4

Q ss_pred             ecceEEeeEecC-cEEEecCCCeEEEEECCCCcE---EEEEecC------------------------------------
Q 016224          109 KTDILCRNWVQG-NCMYGEKCKFLHSWTVGDGFK---LLTQLEG------------------------------------  148 (393)
Q Consensus       109 ~~~i~c~~~~~~-~~~~g~~dg~i~vwd~~~~~~---~~~~l~~------------------------------------  148 (393)
                      ..++.|+.|+++ .+++++.++.|++||+.++ +   .+..+..                                    
T Consensus         4 ~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAIIKNCILSFKYQSP-NHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEEETTEEEEEEEETT-TEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEEeCCeEEEEECCCC-CcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            348899999976 4667778999999999888 4   4545443                                    


Q ss_pred             ------------------CcCCEEEEEecCCCCEE-EEEeCCCcEEEEECC--CCeEEEEEe---cCCceEEE--EeCCC
Q 016224          149 ------------------HQKVVSGITLPSGSDKL-YSGSKDETVRVWDCA--SGQCAGVIN---LGGEVGCM--ISEGP  202 (393)
Q Consensus       149 ------------------h~~~I~~i~~s~~~~~l-~s~s~dg~v~iwd~~--~~~~~~~~~---~~~~~~~~--~~~~~  202 (393)
                                        |...|++++|+|++++| ++++.||.|+|||+.  +++.+..+.   ....+.++  .+++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                              34479999999999996 899999999999999  888777764   33444444  36788


Q ss_pred             EEEEE-cCCeEEEEECCCCcee-----eecCCCCcEEEEEEeCC-----EEEEEeCCCcEEEEEeccCCccccCcee-ec
Q 016224          203 WIFIG-VTNFVKAWNTQTNTDL-----SLSGPVGQVYAMAVGND-----LLFAGTQDGAILAWKFNVTTNCFEPAAS-LK  270 (393)
Q Consensus       203 ~l~~~-~~~~i~v~d~~~~~~~-----~~~~~~~~v~~l~~~~~-----~l~~~~~dg~I~vwd~~~~~~~~~~~~~-~~  270 (393)
                      +|+++ .++.|++|++.++...     .+.+|...|.+++|+|+     +|++++.|+.|++||+...    ..+.. +.
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~----~~~~~~~~  238 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC----FIVDKWLF  238 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT----TCEEEECC
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC----ceeeeeec
Confidence            88776 7789999999877654     56778999999999986     8999999999999999876    33444 55


Q ss_pred             CceeeEEEEEEc-CCEEEEecCCCcEEEeeCCCcceeeEeccC-------------------------ccceEEEEEc--
Q 016224          271 GHSLAVVSLVVG-ANKLYSGSMDNSIRVWNLETLQCIQTLTEH-------------------------TSVVMSLLCW--  322 (393)
Q Consensus       271 ~~~~~v~~l~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-------------------------~~~v~~l~~~--  322 (393)
                      +|...|.+++|+ +++|++++.|+.|++||+++++++..+..+                         ...+.++.+.  
T Consensus       239 ~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~  318 (450)
T 2vdu_B          239 GHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN  318 (450)
T ss_dssp             CCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred             CCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence            899999999995 779999999999999999999998888633                         3467888888  


Q ss_pred             CCEEEEEe-CCCcEEEEEc--CCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeC-------CCeEEEEeCC
Q 016224          323 DQFLLSCS-LDKTIKVWFA--TDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN-------DNSVRFYDLP  388 (393)
Q Consensus       323 ~~~l~s~s-~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~-------dg~I~iwd~~  388 (393)
                      +++|++++ .|+.|+||++  .+...+..+........+.+++|+|+.    ++++.+.       +..|.+|.+.
T Consensus       319 ~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~----~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          319 LPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDE----FQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             SSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTE----EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             CCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCc----EEEEEecccCCCCCCcceEEEEEE
Confidence            67899888 8999999999  555333333332223569999998832    4555433       4557888753

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=3.2e-30  Score=275.31  Aligned_cols=275  Identities=20%  Similarity=0.264  Sum_probs=231.5

Q ss_pred             eeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 016224          107 VIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC  184 (393)
Q Consensus       107 ~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~  184 (393)
                      .|...+.++.|+++  .+++++.|+.|++||+.++ +.+..+.+|...|++++|+|++++|++++.||+|++||+.+...
T Consensus       838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~  916 (1249)
T 3sfz_A          838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK  916 (1249)
T ss_dssp             SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHS
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccce
Confidence            56678999999976  4567999999999999998 88999999999999999999999999999999999999653100


Q ss_pred             -----------------------------EEE---------EecCCceE--EEEeCCCEEEEE-cCCeEEEEECCCCcee
Q 016224          185 -----------------------------AGV---------INLGGEVG--CMISEGPWIFIG-VTNFVKAWNTQTNTDL  223 (393)
Q Consensus       185 -----------------------------~~~---------~~~~~~~~--~~~~~~~~l~~~-~~~~i~v~d~~~~~~~  223 (393)
                                                   ...         ......+.  ++.+++.+++++ .++.|++|++.+++..
T Consensus       917 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~  996 (1249)
T 3sfz_A          917 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF  996 (1249)
T ss_dssp             CCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCE
T ss_pred             eeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCcee
Confidence                                         000         00111222  234678888876 7889999999998876


Q ss_pred             -eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC-CEEEEecCCCcEEEee
Q 016224          224 -SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA-NKLYSGSMDNSIRVWN  299 (393)
Q Consensus       224 -~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~sg~~dg~i~iwd  299 (393)
                       .+.+|...|.+++|+++  +|++++.||.|++||+.++..     .....|...+.++.+.+ ..+++++.|+.|++||
T Consensus       997 ~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A          997 SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY-----VFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp             EECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE-----ECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEE
T ss_pred             eecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce-----EEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEE
Confidence             67789999999999998  899999999999999987632     23457889999999974 5899999999999999


Q ss_pred             CCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe
Q 016224          300 LETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC  377 (393)
Q Consensus       300 ~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s  377 (393)
                      +.+++.+..+.+|...|.+++|+  +++|++++.|++|++||+.++..+..+..|..  .+.+++|+|++.   +|++++
T Consensus      1072 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~--~v~~~~~s~dg~---~lat~~ 1146 (1249)
T 3sfz_A         1072 VITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG--CVRCSAFSLDGI---LLATGD 1146 (1249)
T ss_dssp             TTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSS--CEEEEEECSSSS---EEEEEE
T ss_pred             CCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCC--cEEEEEECCCCC---EEEEEe
Confidence            99999999999999999999998  66999999999999999998887766666554  489999998766   999999


Q ss_pred             CCCeEEEEeCCceee
Q 016224          378 NDNSVRFYDLPSVII  392 (393)
Q Consensus       378 ~dg~I~iwd~~s~~l  392 (393)
                      .||.|++||+.++++
T Consensus      1147 ~dg~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A         1147 DNGEIRIWNVSDGQL 1161 (1249)
T ss_dssp             TTSCCCEEESSSSCC
T ss_pred             CCCEEEEEECCCCce
Confidence            999999999998753

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=4.1e-29  Score=251.39  Aligned_cols=244  Identities=20%  Similarity=0.332  Sum_probs=198.3

Q ss_pred             EEEEEecCCcCCEEEEEecCC-CCEEEEEeCCCcEEEEECCCC-----eEEEEEecC-CceEEE--EeCCCEEEEE-cCC
Q 016224          141 KLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASG-----QCAGVINLG-GEVGCM--ISEGPWIFIG-VTN  210 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~-~~~l~s~s~dg~v~iwd~~~~-----~~~~~~~~~-~~~~~~--~~~~~~l~~~-~~~  210 (393)
                      +....+++|.+.|++|+|+++ +++|+||+.|++|++||+.+.     .....+..+ ..+.++  .+++++|+++ .|+
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg  452 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG  452 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            566789999999999999986 479999999999999999763     344555544 344443  4678888876 789


Q ss_pred             eEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC----
Q 016224          211 FVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA----  283 (393)
Q Consensus       211 ~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~----  283 (393)
                      .|++||+.++... .+.+|...|.+++|+++  +|++++.|++|++||+..... ........+|...|.++.+++    
T Consensus       453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~  531 (694)
T 3dm0_A          453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQ  531 (694)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSS
T ss_pred             cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCc
Confidence            9999999998776 78899999999999988  899999999999999764321 112223357888999999974    


Q ss_pred             CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEE
Q 016224          284 NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLAL  361 (393)
Q Consensus       284 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~  361 (393)
                      ..|++++.|++|++||+++++++.++.+|...|.+++|+  +++|++++.|+.|+|||+.+++.+..+   .....+.++
T Consensus       532 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~---~~~~~v~~~  608 (694)
T 3dm0_A          532 PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL---EANSVIHAL  608 (694)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC---BCSSCEEEE
T ss_pred             ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe---cCCCcEEEE
Confidence            379999999999999999999999999999999999998  679999999999999999887655433   234568999


Q ss_pred             EeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          362 CGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       362 ~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      +|+|+..   +|+++ .|+.|++||+.++++
T Consensus       609 ~~sp~~~---~l~~~-~~~~i~iwd~~~~~~  635 (694)
T 3dm0_A          609 CFSPNRY---WLCAA-TEHGIKIWDLESKSI  635 (694)
T ss_dssp             EECSSSS---EEEEE-ETTEEEEEETTTTEE
T ss_pred             EEcCCCc---EEEEE-cCCCEEEEECCCCCC
Confidence            9988754   55555 567799999988754

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=2.5e-29  Score=231.65  Aligned_cols=238  Identities=18%  Similarity=0.221  Sum_probs=194.9

Q ss_pred             eeecceEEeeEecC-----cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEE------ecCCCCEEEEEeCCCcEE
Q 016224          107 VIKTDILCRNWVQG-----NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGIT------LPSGSDKLYSGSKDETVR  175 (393)
Q Consensus       107 ~~~~~i~c~~~~~~-----~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~------~s~~~~~l~s~s~dg~v~  175 (393)
                      .|..+|.|+.|+++     .+++|+.|+.|++||+.++...+..+.+|...|.+++      |+|++++|++++.||.|+
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~  142 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK  142 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence            57789999999975     3668999999999999988437889999999999995      578999999999999999


Q ss_pred             EEECCCCe-EEEEEecCC-----ceEEEE------eCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeC---
Q 016224          176 VWDCASGQ-CAGVINLGG-----EVGCMI------SEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN---  239 (393)
Q Consensus       176 iwd~~~~~-~~~~~~~~~-----~~~~~~------~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~---  239 (393)
                      +||+.+++ .+..+....     .+.++.      +++.+++++ .++.|++||+++++......|...|.+++|+|   
T Consensus       143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~  222 (357)
T 3i2n_A          143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDI  222 (357)
T ss_dssp             EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSS
T ss_pred             EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCC
Confidence            99999886 666665422     344443      678888876 67899999999999888888999999999997   


Q ss_pred             C--EEEEEeCCCcEEEEEeccCCccccC-ceeecCceeeEEEEEEcCC---EEEEecCCCcEEEeeCCCc----------
Q 016224          240 D--LLFAGTQDGAILAWKFNVTTNCFEP-AASLKGHSLAVVSLVVGAN---KLYSGSMDNSIRVWNLETL----------  303 (393)
Q Consensus       240 ~--~l~~~~~dg~I~vwd~~~~~~~~~~-~~~~~~~~~~v~~l~~~~~---~l~sg~~dg~i~iwd~~~~----------  303 (393)
                      +  +|++++.||.|++||++........ ...+..|...|.+++++++   +|++++.||.|++||++++          
T Consensus       223 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g  302 (357)
T 3i2n_A          223 SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEG  302 (357)
T ss_dssp             SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTS
T ss_pred             CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCC
Confidence            5  9999999999999999886321110 1123389999999999754   7999999999999999753          


Q ss_pred             ---------ceeeEeccCccceEEEEEc--CCEEE-EEeCCCcEEEEEcCCCc
Q 016224          304 ---------QCIQTLTEHTSVVMSLLCW--DQFLL-SCSLDKTIKVWFATDSG  344 (393)
Q Consensus       304 ---------~~~~~~~~~~~~v~~l~~~--~~~l~-s~s~dg~i~iwd~~~~~  344 (393)
                               +++..+..|...|.+++|+  +++|+ +++.|+.|+|||+.+..
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          303 IEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             CCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             CccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence                     4677888999999999998  55676 89999999999997654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=8.3e-29  Score=229.57  Aligned_cols=238  Identities=12%  Similarity=0.050  Sum_probs=198.7

Q ss_pred             ecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe--EEEEEecC-CceEEE--EeCCCEEEEE-cCCeEEEEECCC
Q 016224          146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ--CAGVINLG-GEVGCM--ISEGPWIFIG-VTNFVKAWNTQT  219 (393)
Q Consensus       146 l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~-~~~~~~--~~~~~~l~~~-~~~~i~v~d~~~  219 (393)
                      +..|..+|++++|+|++++|++++.|+.|++||+.+++  .+..+..+ ..+.++  .+++.+++++ .|+.|++||+.+
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            45699999999999999999999999999999999987  77777644 444443  4678888775 788999999988


Q ss_pred             Ccee---eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCC
Q 016224          220 NTDL---SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMD  292 (393)
Q Consensus       220 ~~~~---~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~d  292 (393)
                      ++..   .+..|...|.+++|+++  +|++++.|+.|++||++..............|...|.+++++  +++|++++.|
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  163 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  163 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence            8743   45778999999999987  999999999999999998643211223346688999999996  5689999999


Q ss_pred             CcEEEeeC------------------CCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEee
Q 016224          293 NSIRVWNL------------------ETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTH  352 (393)
Q Consensus       293 g~i~iwd~------------------~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  352 (393)
                      +.|++||+                  .+++++..+..|...+.++.|+  +++|++++.|+.|++||+++.+.+..+..+
T Consensus       164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  243 (372)
T 1k8k_C          164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE  243 (372)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS
T ss_pred             CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC
Confidence            99999995                  4678899999999999999997  669999999999999999988877777655


Q ss_pred             cCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          353 NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       353 ~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      ..  .+.+++|+|++.   +|+++ .|+.|++|++.+
T Consensus       244 ~~--~v~~~~~~~~~~---~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          244 TL--PLLAVTFITESS---LVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             SC--CEEEEEEEETTE---EEEEE-TTSSCEEEEEET
T ss_pred             CC--CeEEEEEecCCC---EEEEE-eCCeEEEEEccC
Confidence            43  589999998765   77766 999999999987

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-27  Score=221.34  Aligned_cols=246  Identities=15%  Similarity=0.203  Sum_probs=205.8

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CceEEEE--eCCCEEEEE-cCCeEEEEE
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-GEVGCMI--SEGPWIFIG-VTNFVKAWN  216 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~--~~~~~l~~~-~~~~i~v~d  216 (393)
                      .....+.+|...|++++|+|++++|++++.||.|++||+.+++.+..+..+ ..+.++.  +++.+++++ .|+.|++||
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  102 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD  102 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            555678999999999999999999999999999999999999999988754 4454443  567777765 889999999


Q ss_pred             CCCCceeeecCCCCcEEEEEEeCC--EEEEEeCC-----CcEEEEEeccCCccc-------cCceeecCcee--eEEEEE
Q 016224          217 TQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQD-----GAILAWKFNVTTNCF-------EPAASLKGHSL--AVVSLV  280 (393)
Q Consensus       217 ~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~d-----g~I~vwd~~~~~~~~-------~~~~~~~~~~~--~v~~l~  280 (393)
                      +.+++......+...|.+++|+++  +|++++.+     +.|.+||+.......       .....+..|..  .+.+++
T Consensus       103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (369)
T 3zwl_B          103 VSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG  182 (369)
T ss_dssp             TTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred             CCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence            999998855558999999999998  89999988     999999998764321       12334444544  788888


Q ss_pred             Ec--CCEEEEecCCCcEEEeeCCC-cceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCC
Q 016224          281 VG--ANKLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE  355 (393)
Q Consensus       281 ~~--~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  355 (393)
                      ++  +++|++++.|+.|++||+++ .+.+..+..|...|.++.|+  +++|++++.|+.|++||+++.+.+..+.   ..
T Consensus       183 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~  259 (369)
T 3zwl_B          183 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE---TD  259 (369)
T ss_dssp             ECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CS
T ss_pred             EcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec---CC
Confidence            86  66999999999999999998 78899999999999999997  6799999999999999998877666555   34


Q ss_pred             ccEEEEEeeeCCCCCcEEEEEeCCC--------------eEEEEeCCceee
Q 016224          356 HGVLALCGMPDSEGKPVLLCSCNDN--------------SVRFYDLPSVII  392 (393)
Q Consensus       356 ~~v~~~~~~~~~~~~~~l~s~s~dg--------------~I~iwd~~s~~l  392 (393)
                      ..+..++|+|+..   ++++++.++              .|++||+.+++.
T Consensus       260 ~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  307 (369)
T 3zwl_B          260 CPLNTAVITPLKE---FIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE  307 (369)
T ss_dssp             SCEEEEEECSSSS---EEEEEECCC-------------CEEEEEETTTCCE
T ss_pred             CCceeEEecCCCc---eEEEeecCCCceEEEEecCCCcceeEEEecCCCcc
Confidence            4588999988766   899999888              899999987653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=6.5e-29  Score=224.06  Aligned_cols=205  Identities=16%  Similarity=0.198  Sum_probs=169.2

Q ss_pred             EEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC--eEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCc
Q 016224          144 TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG--QCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNT  221 (393)
Q Consensus       144 ~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~  221 (393)
                      ..+.+|...|++++|+|++++|++|+.|++|+|||+.+.  +.+                                    
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~------------------------------------   46 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLI------------------------------------   46 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCC------------------------------------
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEE------------------------------------
Confidence            467899999999999999999999999999999998643  222                                    


Q ss_pred             eeeecCCCCcEEEEEEeC----CEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc----CCEEEEecCCC
Q 016224          222 DLSLSGPVGQVYAMAVGN----DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG----ANKLYSGSMDN  293 (393)
Q Consensus       222 ~~~~~~~~~~v~~l~~~~----~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg  293 (393)
                       ..+.+|...|.+++|++    ++|++++.|++|++||++.+..  .....+..|...|.+++|+    +.+|++++.|+
T Consensus        47 -~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~--~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~  123 (297)
T 2pm7_B           47 -DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW--SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG  123 (297)
T ss_dssp             -EEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB--CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             -EEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce--EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCC
Confidence             24568999999999974    3999999999999999986532  3456677899999999996    45899999999


Q ss_pred             cEEEeeCCCcc--eeeEeccCccceEEEEEcC---------------CEEEEEeCCCcEEEEEcCCCcc----eEEEEee
Q 016224          294 SIRVWNLETLQ--CIQTLTEHTSVVMSLLCWD---------------QFLLSCSLDKTIKVWFATDSGN----LEVTYTH  352 (393)
Q Consensus       294 ~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~---------------~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~  352 (393)
                      .|++||+++..  ....+.+|...|.+++|++               ++|++|+.|++|+|||+++...    ...+..|
T Consensus       124 ~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H  203 (297)
T 2pm7_B          124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  203 (297)
T ss_dssp             EEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             cEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC
Confidence            99999998763  2466788999999999984               4899999999999999987653    2233333


Q ss_pred             cCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          353 NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       353 ~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                        ...|.+++|+|+...+.+|++++.|++|+|||+.+
T Consensus       204 --~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          204 --SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             --SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             --CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence              34699999999853345999999999999999876

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=8.9e-29  Score=229.78  Aligned_cols=236  Identities=14%  Similarity=0.081  Sum_probs=190.1

Q ss_pred             eecceEEeeEecCcEEE-----------ecCCCeEEEEECCCCcEEEE---Ee-----cCCcCCEEEEEecCCCCEEEEE
Q 016224          108 IKTDILCRNWVQGNCMY-----------GEKCKFLHSWTVGDGFKLLT---QL-----EGHQKVVSGITLPSGSDKLYSG  168 (393)
Q Consensus       108 ~~~~i~c~~~~~~~~~~-----------g~~dg~i~vwd~~~~~~~~~---~l-----~~h~~~I~~i~~s~~~~~l~s~  168 (393)
                      +...+.|+.+..+.+++           |+.|+.+++|++.+....+.   ..     ..+...+.+++|+|||++|+++
T Consensus        72 ~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~a  151 (365)
T 4h5i_A           72 NDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIA  151 (365)
T ss_dssp             TSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEE
T ss_pred             CCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEE
Confidence            34467788887766655           45688899999875422222   22     2345679999999999998755


Q ss_pred             e--CCCcEEEEECCCCeEEEEEecCCceEEE--EeCCCEEEEEcCCeEEEEECCCCcee---eecCCCCcEEEEEEeCC-
Q 016224          169 S--KDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGND-  240 (393)
Q Consensus       169 s--~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~i~v~d~~~~~~~---~~~~~~~~v~~l~~~~~-  240 (393)
                      +  .|++|+|||+.+++++..+.+...+..+  .+++++++++.++.+.+|+..++...   ....|...|.+++|+|+ 
T Consensus       152 s~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg  231 (365)
T 4h5i_A          152 SSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADD  231 (365)
T ss_dssp             ESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT
T ss_pred             ECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC
Confidence            4  7899999999999999999887776544  47899999998888999998888765   34568889999999998 


Q ss_pred             -EEEEEeCCC----cEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEe-ccC
Q 016224          241 -LLFAGTQDG----AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTL-TEH  312 (393)
Q Consensus       241 -~l~~~~~dg----~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~  312 (393)
                       .+++++.|+    .+++|++............+.+|...|.+++|+  +++||+|+.|++|+|||+++++++.++ .+|
T Consensus       232 ~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH  311 (365)
T 4h5i_A          232 TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH  311 (365)
T ss_dssp             EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS
T ss_pred             CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc
Confidence             888888777    588888876643333445677899999999986  569999999999999999999999885 789


Q ss_pred             ccceEEEEEc--CCEEEEEeCCCcEEEEEcCCC
Q 016224          313 TSVVMSLLCW--DQFLLSCSLDKTIKVWFATDS  343 (393)
Q Consensus       313 ~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~  343 (393)
                      ...|++++|+  +++|+++|.|++|+|||+...
T Consensus       312 ~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          312 SFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999998  679999999999999999643

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=1.1e-28  Score=228.30  Aligned_cols=246  Identities=11%  Similarity=0.090  Sum_probs=179.8

Q ss_pred             EEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-ceEEEEeCCCEEE-EE-cC
Q 016224          133 SWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG-EVGCMISEGPWIF-IG-VT  209 (393)
Q Consensus       133 vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~l~-~~-~~  209 (393)
                      ||++.+. +.+.++..|...|++++|+|++++|++|+.|+ ++|||+.+++......... ....+..++..++ ++ .+
T Consensus         3 i~s~~~~-~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   80 (355)
T 3vu4_A            3 LGSMITR-NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVK   80 (355)
T ss_dssp             -----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSST
T ss_pred             ccccccc-CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCc
Confidence            4666665 66777889999999999999999999998775 7899999887776655432 2344445666664 33 66


Q ss_pred             CeEEEEECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEE-
Q 016224          210 NFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYS-  288 (393)
Q Consensus       210 ~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s-  288 (393)
                      +.|++||..+++.+....+...|.++.++++.++++. ++.|++||+.....   .+..+.. ...+.+++  .++++. 
T Consensus        81 ~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~---~~~~~~~-~~~~~~~s--~~~la~~  153 (355)
T 3vu4_A           81 EVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWK---RITDDIR-FGGVCEFS--NGLLVYS  153 (355)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCC---BSSCCEE-EEEEEEEE--TTEEEEE
T ss_pred             cEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEE-cCEEEEEECCCCce---eeEEecc-CCceEEEE--ccEEEEe
Confidence            7999999999988855567889999999999766654 78999999987621   2222222 33444444  477666 


Q ss_pred             -ecCCCcEEEeeCCCcc----------------eeeEeccCccceEEEEEc--CCEEEEEeCCCc-EEEEEcCCCcceEE
Q 016224          289 -GSMDNSIRVWNLETLQ----------------CIQTLTEHTSVVMSLLCW--DQFLLSCSLDKT-IKVWFATDSGNLEV  348 (393)
Q Consensus       289 -g~~dg~i~iwd~~~~~----------------~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~-i~iwd~~~~~~~~~  348 (393)
                       |+.||.|++||+++++                .+..+.+|...|.+++|+  +++|++++.|++ |+|||+++++.+..
T Consensus       154 sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~  233 (355)
T 3vu4_A          154 NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE  233 (355)
T ss_dssp             ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred             CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence             6899999999999865                278899999999999998  679999999998 99999998888877


Q ss_pred             EEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          349 TYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       349 ~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      +....+...+.+++|+|++.   +|++++.|++|++||++..
T Consensus       234 ~~~g~h~~~v~~~~~s~~~~---~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          234 FRRGLDRADVVDMKWSTDGS---KLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EECTTCCSCEEEEEECTTSC---EEEEEETTCEEEEEESSCC
T ss_pred             EEcCCCCCcEEEEEECCCCC---EEEEEECCCEEEEEEccCC
Confidence            76322345699999998766   9999999999999999754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=1.7e-28  Score=250.84  Aligned_cols=243  Identities=17%  Similarity=0.313  Sum_probs=210.0

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-CceEE--EEeCCCEEEEE-cCCeEEEEE
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-GEVGC--MISEGPWIFIG-VTNFVKAWN  216 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~~~~--~~~~~~~l~~~-~~~~i~v~d  216 (393)
                      +..+.+.+|.+.|++++|+|++++|++++.||.|+|||+.+++.+..+..+ ..+.+  +.+++++|+++ .++.|++||
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            456788999999999999999999999999999999999999999888854 34443  45788888776 788999999


Q ss_pred             CCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC---CEEEEec
Q 016224          217 TQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGS  290 (393)
Q Consensus       217 ~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sg~  290 (393)
                      +.+++.. .+..|...|.+++|+|+  +|++++.||.|++||+....   .....+.+|...|.+++|++   +.|++++
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~  160 (814)
T 3mkq_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW---ALEQTFEGHEHFVMCVAFNPKDPSTFASGC  160 (814)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS---EEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred             CCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc---eEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence            9998877 77889999999999998  89999999999999998753   44566778999999999975   4899999


Q ss_pred             CCCcEEEeeCCCcceeeEeccCc-cceEEEEEc----CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeee
Q 016224          291 MDNSIRVWNLETLQCIQTLTEHT-SVVMSLLCW----DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMP  365 (393)
Q Consensus       291 ~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~  365 (393)
                      .|+.|++||+++++....+..+. ..+.++.|+    +.+|++++.|+.|++||+.++..+..+..|..  .+..++|+|
T Consensus       161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~~~~~~  238 (814)
T 3mkq_A          161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAVFHP  238 (814)
T ss_dssp             TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS--CEEEEEECS
T ss_pred             CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcC
Confidence            99999999999988888887655 788999885    56999999999999999988877776665544  589999988


Q ss_pred             CCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          366 DSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       366 ~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      +++   +|++++.||.|++||+.+++
T Consensus       239 ~~~---~l~~~~~dg~v~vwd~~~~~  261 (814)
T 3mkq_A          239 TLP---IIISGSEDGTLKIWNSSTYK  261 (814)
T ss_dssp             SSS---EEEEEETTSCEEEEETTTCS
T ss_pred             CCC---EEEEEeCCCeEEEEECCCCc
Confidence            766   99999999999999998765

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.3e-28  Score=247.95  Aligned_cols=277  Identities=10%  Similarity=0.113  Sum_probs=214.2

Q ss_pred             ceeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 016224          106 AVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ  183 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~  183 (393)
                      ..|...|+|++|++++  +++|+.||.|+||+..+. +....+. |...|.+|+|+| +++|++++.|++|+|||+.+++
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~-~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~   90 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV-EVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK   90 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC-EEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc-EEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence            3567799999999874  567999999999999876 6655554 889999999999 8899999999999999999999


Q ss_pred             EEEEEecCCceEEEE--eCCCEEEEE-cCCeEEEEECCCCcee------------eecCCCCcEEEEEEeCC---EEEEE
Q 016224          184 CAGVINLGGEVGCMI--SEGPWIFIG-VTNFVKAWNTQTNTDL------------SLSGPVGQVYAMAVGND---LLFAG  245 (393)
Q Consensus       184 ~~~~~~~~~~~~~~~--~~~~~l~~~-~~~~i~v~d~~~~~~~------------~~~~~~~~v~~l~~~~~---~l~~~  245 (393)
                      ++..+.....+.++.  +++.+++++ .|+.|++||+.+++..            .+.+|...|.+++|+|+   .|+++
T Consensus        91 ~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g  170 (902)
T 2oaj_A           91 VLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS  170 (902)
T ss_dssp             EEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEE
Confidence            999888777776655  578888876 7899999999988753            23568899999999995   89999


Q ss_pred             eCCCcEEEEEeccCCccccCceeecC------------------ceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcce
Q 016224          246 TQDGAILAWKFNVTTNCFEPAASLKG------------------HSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQC  305 (393)
Q Consensus       246 ~~dg~I~vwd~~~~~~~~~~~~~~~~------------------~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~  305 (393)
                      +.|+.| +||++...    ....+..                  |...|.+++|+  +.+|++++.|++|++||++++++
T Consensus       171 ~~dg~v-lWd~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~  245 (902)
T 2oaj_A          171 YEYVTL-TYSLVENE----IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM  245 (902)
T ss_dssp             CSSCEE-EEETTTTE----EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred             eCCCcE-EEECCCCc----eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence            999999 99998763    3333333                  45779999996  56999999999999999999887


Q ss_pred             eeE--ec---c-------------CccceEEEEEc----C---CEEEEEeCC-----CcEEEEEcCC-------------
Q 016224          306 IQT--LT---E-------------HTSVVMSLLCW----D---QFLLSCSLD-----KTIKVWFATD-------------  342 (393)
Q Consensus       306 ~~~--~~---~-------------~~~~v~~l~~~----~---~~l~s~s~d-----g~i~iwd~~~-------------  342 (393)
                      +..  +.   .             |...|.+++|.    +   .+|++|+.|     ..+.+|++..             
T Consensus       246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~  325 (902)
T 2oaj_A          246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMK  325 (902)
T ss_dssp             EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHH
T ss_pred             EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhh
Confidence            653  31   2             34579999994    2   467777666     3799998521             


Q ss_pred             -----CcceEEEEeecCCccEEEEEeeeC-C------CCCcEEEEEeCCCeEEEEeCCcee
Q 016224          343 -----SGNLEVTYTHNEEHGVLALCGMPD-S------EGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       343 -----~~~~~~~~~~~~~~~v~~~~~~~~-~------~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                           ... ...........+..+.+.++ .      .+...+++++.||.|++|++.++.
T Consensus       326 ~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~  385 (902)
T 2oaj_A          326 NYYANPKQ-MKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGI  385 (902)
T ss_dssp             HHHHSCSE-EEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCC
T ss_pred             hhhcCccc-eEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCC
Confidence                 111 22222222345778887662 1      233478889999999999998764

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=1.5e-29  Score=240.62  Aligned_cols=240  Identities=12%  Similarity=0.223  Sum_probs=186.2

Q ss_pred             CCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-----------EEEEEecCC-------------ceEE--EEeCC
Q 016224          148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ-----------CAGVINLGG-------------EVGC--MISEG  201 (393)
Q Consensus       148 ~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~-----------~~~~~~~~~-------------~~~~--~~~~~  201 (393)
                      .|.+.|++++|+|++++||+|+.||.|+|||+.+++           ....+..+.             .+.+  +.+++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            378999999999999999999999999999998876           466666552             3433  33454


Q ss_pred             --CEEE-EEcCCeEEEEECCCCcee-----------------------------------------eecCCCCcEEEEEE
Q 016224          202 --PWIF-IGVTNFVKAWNTQTNTDL-----------------------------------------SLSGPVGQVYAMAV  237 (393)
Q Consensus       202 --~~l~-~~~~~~i~v~d~~~~~~~-----------------------------------------~~~~~~~~v~~l~~  237 (393)
                        ..++ ++.|+.|++|++.++...                                         ...+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              4444 568999999998764431                                         13679999999999


Q ss_pred             eCC--EEEEEeCCCcEEEEEeccCCccccC----ceeecCceeeEEEEEEcC---CEEEEecCCCcEEEeeCCCcce---
Q 016224          238 GND--LLFAGTQDGAILAWKFNVTTNCFEP----AASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQC---  305 (393)
Q Consensus       238 ~~~--~l~~~~~dg~I~vwd~~~~~~~~~~----~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~iwd~~~~~~---  305 (393)
                      +++  +|+++ .|+.|++||++........    ...+.+|...|.+++|++   ++|++++.|+.|++||+++++.   
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            998  88888 8999999999854321110    013567899999999973   6899999999999999999887   


Q ss_pred             -eeEeccCcc------------ceEEEEEc--CCEEEEEeCCCcEEEEEcCC-CcceEEEEeecCCcc------------
Q 016224          306 -IQTLTEHTS------------VVMSLLCW--DQFLLSCSLDKTIKVWFATD-SGNLEVTYTHNEEHG------------  357 (393)
Q Consensus       306 -~~~~~~~~~------------~v~~l~~~--~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~------------  357 (393)
                       +..+..|..            .|.+++|+  +++|++++. +.|+|||++. ...+..+..|.....            
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~  343 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF  343 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred             eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence             788888876            89999998  679999998 9999999987 666666666543211            


Q ss_pred             -EEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          358 -VLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       358 -v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                       +..++|+|++.   +|++++.||.|++||+.++++
T Consensus       344 ~~~~~~~s~~~~---~l~s~s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          344 DKFECCWNGSDS---VVMTGSYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             CCCCEEECTTSS---EEEEECSTTEEEEEETTTCCE
T ss_pred             cceEEEECCCCC---EEEEeccCCEEEEEEcCCCcc
Confidence             33488887765   999999999999999998754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=1.3e-28  Score=233.68  Aligned_cols=254  Identities=16%  Similarity=0.254  Sum_probs=201.9

Q ss_pred             ccceeecceEEeeEecC---cEEEecCCCeEEEEECCCC---------cEEEEEecCCcCCEEEEEecCCCC-EEEEEeC
Q 016224          104 NRAVIKTDILCRNWVQG---NCMYGEKCKFLHSWTVGDG---------FKLLTQLEGHQKVVSGITLPSGSD-KLYSGSK  170 (393)
Q Consensus       104 ~~~~~~~~i~c~~~~~~---~~~~g~~dg~i~vwd~~~~---------~~~~~~l~~h~~~I~~i~~s~~~~-~l~s~s~  170 (393)
                      ....|...|.+++|+++   .+++++.+|.|++|++.+.         .+.+..+.+|...|++|+|+|++. +|++|+.
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  202 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD  202 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence            34567889999999986   3557899999999999761         367788899999999999999988 9999999


Q ss_pred             CCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeC
Q 016224          171 DETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQ  247 (393)
Q Consensus       171 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~  247 (393)
                      ||+|++||+.++......                          .    .....+..|...|.+++|+++   +|++++.
T Consensus       203 dg~i~vwd~~~~~~~~~~--------------------------~----~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~  252 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRV--------------------------I----DAKNIFTGHTAVVEDVAWHLLHESLFGSVAD  252 (430)
T ss_dssp             TSCEEEEETTSCCBGGGE--------------------------E----ECSEEECCCSSCEEEEEECSSCTTEEEEEET
T ss_pred             CCeEEEEeCCCCCCCCce--------------------------e----ccceeecCCCCCEeeeEEeCCCCCEEEEEeC
Confidence            999999999874321000                          0    001244578899999999883   8999999


Q ss_pred             CCcEEEEEeccCCccccCceeecCceeeEEEEEEcC--C-EEEEecCCCcEEEeeCCC-cceeeEeccCccceEEEEEc-
Q 016224          248 DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--N-KLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW-  322 (393)
Q Consensus       248 dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~-~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~-  322 (393)
                      |+.|++||++.... ......+..|...|.+++|++  . +|++|+.||.|++||+++ .+++..+..|...|.++.|+ 
T Consensus       253 dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp  331 (430)
T 2xyi_A          253 DQKLMIWDTRNNNT-SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP  331 (430)
T ss_dssp             TSEEEEEETTCSCS-SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECS
T ss_pred             CCeEEEEECCCCCC-CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECC
Confidence            99999999997632 145566778999999999974  3 799999999999999998 56789999999999999998 


Q ss_pred             -C-CEEEEEeCCCcEEEEEcCCCcc-----------eEEEEe-ecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          323 -D-QFLLSCSLDKTIKVWFATDSGN-----------LEVTYT-HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       323 -~-~~l~s~s~dg~i~iwd~~~~~~-----------~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                       + .+|++++.|+.|+|||+.....           ...+.. ..+...+..++|+|+.+  .+|++++.||.|+||++.
T Consensus       332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~--~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP--WIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSST--TEEEEEETTSEEEEEEEC
T ss_pred             CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCC--CEEEEEECCCCEEEeEcc
Confidence             3 4799999999999999976321           012222 22334599999988644  389999999999999987


Q ss_pred             ce
Q 016224          389 SV  390 (393)
Q Consensus       389 s~  390 (393)
                      ..
T Consensus       410 ~~  411 (430)
T 2xyi_A          410 EN  411 (430)
T ss_dssp             HH
T ss_pred             cc
Confidence            54

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.4e-29  Score=253.12  Aligned_cols=244  Identities=19%  Similarity=0.209  Sum_probs=200.4

Q ss_pred             ceeecceEEeeEecCc--EEEecCCCeEEEEECCCC-cEEEEEecCCcCCEEEEEecCC--CCEEEEEeCCCcEEEEECC
Q 016224          106 AVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSG--SDKLYSGSKDETVRVWDCA  180 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~-~~~~~~l~~h~~~I~~i~~s~~--~~~l~s~s~dg~v~iwd~~  180 (393)
                      ..|..+|+|++|++++  +++|+.||.|+|||+.++ .+.+..+.+|...|++++|+++  +++|++|+.||+|++||+.
T Consensus         6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~   85 (753)
T 3jro_A            6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE   85 (753)
T ss_dssp             --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE
T ss_pred             ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC
Confidence            4577899999999764  678999999999998732 3778899999999999999987  9999999999999999998


Q ss_pred             CCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC----EEEEEeCCCcEEEEEe
Q 016224          181 SGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND----LLFAGTQDGAILAWKF  256 (393)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~----~l~~~~~dg~I~vwd~  256 (393)
                      +++....                                   ..+..|...|.+++|+|+    .+++++.||.|++||+
T Consensus        86 ~~~~~~~-----------------------------------~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl  130 (753)
T 3jro_A           86 NGRWSQI-----------------------------------AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF  130 (753)
T ss_dssp             TTEEEEE-----------------------------------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred             CCccccc-----------------------------------ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEe
Confidence            8753221                                   134578899999999874    8999999999999999


Q ss_pred             ccCCccccCceeecCceeeEEEEEEcC---------------CEEEEecCCCcEEEeeCCCc----ceeeEeccCccceE
Q 016224          257 NVTTNCFEPAASLKGHSLAVVSLVVGA---------------NKLYSGSMDNSIRVWNLETL----QCIQTLTEHTSVVM  317 (393)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~l~~~~---------------~~l~sg~~dg~i~iwd~~~~----~~~~~~~~~~~~v~  317 (393)
                      +....  .....+..|...|.++.+++               .+|++|+.||.|++||++++    .++..+.+|...|.
T Consensus       131 ~~~~~--~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~  208 (753)
T 3jro_A          131 KENGT--TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR  208 (753)
T ss_dssp             CSSSC--CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred             ecCCC--cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEE
Confidence            87643  33456678899999999864               58999999999999999876    56778889999999


Q ss_pred             EEEEc-----CCEEEEEeCCCcEEEEEcCCCcce---EEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          318 SLLCW-----DQFLLSCSLDKTIKVWFATDSGNL---EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       318 ~l~~~-----~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      +++|+     +.+|++++.||.|++||+.+....   ...........+.+++|+|++.   +|++++.||.|++|++.+
T Consensus       209 ~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~---~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          209 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN---VLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             EEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC---CEEEECSSSCEECCBCCS
T ss_pred             EEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC---EEEEEcCCCEEEEEecCC
Confidence            99998     458999999999999999876421   1111222345688899988765   899999999999999984

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=7.3e-29  Score=232.57  Aligned_cols=260  Identities=15%  Similarity=0.191  Sum_probs=201.3

Q ss_pred             CCeEEEEECCCCcEEEEEecCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECCCCeEEEEEe--------------cCC
Q 016224          128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVIN--------------LGG  192 (393)
Q Consensus       128 dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--------------~~~  192 (393)
                      +..+++|+.+.+ +....+.+|.+.|++++|+| ++++|++++.||.|++||+.+++....+.              +..
T Consensus        22 ~~~~~v~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (408)
T 4a11_B           22 ESTRRVLGLELN-KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY  100 (408)
T ss_dssp             HHHHHHHTEEEC-TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred             cCcceeeccccC-cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence            445677887766 56678889999999999999 99999999999999999999876555443              444


Q ss_pred             ceEEEE--e-CCCEEEE-EcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC-----EEEEEeCCCcEEEEEeccCCccc
Q 016224          193 EVGCMI--S-EGPWIFI-GVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-----LLFAGTQDGAILAWKFNVTTNCF  263 (393)
Q Consensus       193 ~~~~~~--~-~~~~l~~-~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~-----~l~~~~~dg~I~vwd~~~~~~~~  263 (393)
                      .+.++.  + ++.++++ +.++.|++||+.+++......+...+.++.+.+.     ++++++.|+.|++||++..    
T Consensus       101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~----  176 (408)
T 4a11_B          101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG----  176 (408)
T ss_dssp             CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS----
T ss_pred             cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc----
Confidence            555544  3 4555555 5799999999999998876678889999999763     8999999999999999876    


Q ss_pred             cCceeecCceeeEEEEEEcC--C-EEEEecCCCcEEEeeCCCcc-eeeEe---------------ccCccceEEEEEc--
Q 016224          264 EPAASLKGHSLAVVSLVVGA--N-KLYSGSMDNSIRVWNLETLQ-CIQTL---------------TEHTSVVMSLLCW--  322 (393)
Q Consensus       264 ~~~~~~~~~~~~v~~l~~~~--~-~l~sg~~dg~i~iwd~~~~~-~~~~~---------------~~~~~~v~~l~~~--  322 (393)
                      +....+..|...|.++++++  . +|++++.|+.|++||++++. ++..+               ..|...|.+++|+  
T Consensus       177 ~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  256 (408)
T 4a11_B          177 SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD  256 (408)
T ss_dssp             CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred             ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence            55677888999999999974  3 69999999999999998765 44444               5788999999998  


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          323 DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       323 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      +++|++++.|+.|++||+.+++.......+........+.+.........+++++.|+.|++||+.++++
T Consensus       257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~  326 (408)
T 4a11_B          257 GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ  326 (408)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE
T ss_pred             CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc
Confidence            6799999999999999998876654433322111111122222222233577778899999999988754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=1.8e-26  Score=215.75  Aligned_cols=257  Identities=12%  Similarity=0.100  Sum_probs=205.1

Q ss_pred             EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEE-EEEeCCCcEEEEECCCCeEEEEEecCCceEEEE--
Q 016224          122 CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKL-YSGSKDETVRVWDCASGQCAGVINLGGEVGCMI--  198 (393)
Q Consensus       122 ~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--  198 (393)
                      +++++.|+.|++||+.++ +.+..+..|. .+.+++|+|++++| ++++.|++|++||+.+++.+..+..+..+..+.  
T Consensus         5 ~vs~~~d~~v~v~d~~~~-~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~s   82 (391)
T 1l0q_A            5 YIANSESDNISVIDVTSN-KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVS   82 (391)
T ss_dssp             EEEETTTTEEEEEETTTT-EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEEC
T ss_pred             EEEcCCCCEEEEEECCCC-eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEEC
Confidence            457889999999999998 8888888775 48999999999987 677789999999999999999998877665543  


Q ss_pred             eCCCEEEE-E-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EE-EEEeCCCcEEEEEeccCCccccCceeecCce
Q 016224          199 SEGPWIFI-G-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGTQDGAILAWKFNVTTNCFEPAASLKGHS  273 (393)
Q Consensus       199 ~~~~~l~~-~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~  273 (393)
                      ++++.+++ + .++.|++||+.+++......+...+.+++|+++  .| ++++.++.|++||+.++    +....+..+ 
T Consensus        83 pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~~~~-  157 (391)
T 1l0q_A           83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK----AVINTVSVG-  157 (391)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEEEEECC-
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC----cEEEEEecC-
Confidence            57887754 4 458999999999988855556678999999988  44 78888999999999876    334444433 


Q ss_pred             eeEEEEEEc--CCEE-EEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEe---CCCcEEEEEcCCCcc
Q 016224          274 LAVVSLVVG--ANKL-YSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCS---LDKTIKVWFATDSGN  345 (393)
Q Consensus       274 ~~v~~l~~~--~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s---~dg~i~iwd~~~~~~  345 (393)
                      ..+..++++  +++| ++++.++.|++||+++++.+..+. +...+.+++++  +++|++++   .++.|++||+.+++.
T Consensus       158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~  236 (391)
T 1l0q_A          158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI  236 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE
Confidence            345677775  5565 678889999999999998888776 45578888888  66888777   689999999988776


Q ss_pred             eEEEEeecCCccEEEEEeeeCCCCCcEE-EEEeCCCeEEEEeCCceee
Q 016224          346 LEVTYTHNEEHGVLALCGMPDSEGKPVL-LCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       346 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l-~s~s~dg~I~iwd~~s~~l  392 (393)
                      +..+..+.   .+..++|+|++.   +| ++++.|+.|++||+.++++
T Consensus       237 ~~~~~~~~---~~~~~~~s~dg~---~l~~s~~~d~~v~v~d~~~~~~  278 (391)
T 1l0q_A          237 TARIPVGP---DPAGIAVTPDGK---KVYVALSFXNTVSVIDTATNTI  278 (391)
T ss_dssp             EEEEECCS---SEEEEEECTTSS---EEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEEecCC---CccEEEEccCCC---EEEEEcCCCCEEEEEECCCCcE
Confidence            65555432   477888888754   55 6778899999999998764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.96  E-value=1.5e-28  Score=233.78  Aligned_cols=244  Identities=13%  Similarity=0.191  Sum_probs=185.4

Q ss_pred             EEEEEecCCcCCEEEEEecC-CCCEEEEEeCCCcEEEEECCCCeEEEEEe---cCCceEEEE--e-CCCEEEEE-cCCeE
Q 016224          141 KLLTQLEGHQKVVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVIN---LGGEVGCMI--S-EGPWIFIG-VTNFV  212 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~---~~~~~~~~~--~-~~~~l~~~-~~~~i  212 (393)
                      +......+|...|++|+|+| ++++||+|+.||+|+|||+.+++....+.   +...+.++.  + ++.+|+++ .|++|
T Consensus       110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v  189 (435)
T 4e54_B          110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT  189 (435)
T ss_dssp             TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred             eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence            33445667999999999999 56799999999999999998876555443   334555543  2 56777765 88999


Q ss_pred             EEEECCCCceeeec---CCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC---C
Q 016224          213 KAWNTQTNTDLSLS---GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---N  284 (393)
Q Consensus       213 ~v~d~~~~~~~~~~---~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~  284 (393)
                      ++||++++....+.   .+...+.+++|+++  +|++|+.||.|++||++.     +.+..+.+|...|.+++|++   .
T Consensus       190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-----~~~~~~~~h~~~v~~v~~~p~~~~  264 (435)
T 4e54_B          190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-----KELWNLRMHKKKVTHVALNPCCDW  264 (435)
T ss_dssp             EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-----CBCCCSBCCSSCEEEEEECTTCSS
T ss_pred             EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-----ceeEEEecccceEEeeeecCCCce
Confidence            99999887655333   33446788999987  999999999999999865     33566788999999999973   3


Q ss_pred             EEEEecCCCcEEEeeCCCcceeeEe---ccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCC----
Q 016224          285 KLYSGSMDNSIRVWNLETLQCIQTL---TEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE----  355 (393)
Q Consensus       285 ~l~sg~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----  355 (393)
                      +|++++.|+.|++||+++.+....+   .+|...|.+++|+  +.+|++++.|+.|+|||+.+......+..+...    
T Consensus       265 ~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~  344 (435)
T 4e54_B          265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQH  344 (435)
T ss_dssp             EEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSS
T ss_pred             EEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccccc
Confidence            7899999999999999987655443   5799999999998  679999999999999999988777666554321    


Q ss_pred             ccEEEEEeeeCCCCCcEEEEEe------------CCCeEEEEeCCceee
Q 016224          356 HGVLALCGMPDSEGKPVLLCSC------------NDNSVRFYDLPSVII  392 (393)
Q Consensus       356 ~~v~~~~~~~~~~~~~~l~s~s------------~dg~I~iwd~~s~~l  392 (393)
                      .......|+|...   +++++.            .++.|++||+.++++
T Consensus       345 ~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~  390 (435)
T 4e54_B          345 LTPIKAAWHPRYN---LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM  390 (435)
T ss_dssp             SCCCBCEECSSSS---CEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE
T ss_pred             ceeEEEEEcCCCC---EEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE
Confidence            1233344544432   344432            446899999998764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.1e-28  Score=238.83  Aligned_cols=233  Identities=10%  Similarity=0.072  Sum_probs=180.0

Q ss_pred             CcCCEEEEEecCCC---------CEEEE-------------------EeCCCcEEEEECCCCeEE----EEEec-CCceE
Q 016224          149 HQKVVSGITLPSGS---------DKLYS-------------------GSKDETVRVWDCASGQCA----GVINL-GGEVG  195 (393)
Q Consensus       149 h~~~I~~i~~s~~~---------~~l~s-------------------~s~dg~v~iwd~~~~~~~----~~~~~-~~~~~  195 (393)
                      +.+.|.+|+|+|++         ++||+                   ++.|++|+|||+.+++..    ..+.. ...+.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            56677777777665         45554                   567899999999877642    23333 34444


Q ss_pred             EEE--eC------CCEEEE-EcCCeEEEEECCCCce------------eeecCCCCcEEEEEEeCC-EEEEEeCCCcEEE
Q 016224          196 CMI--SE------GPWIFI-GVTNFVKAWNTQTNTD------------LSLSGPVGQVYAMAVGND-LLFAGTQDGAILA  253 (393)
Q Consensus       196 ~~~--~~------~~~l~~-~~~~~i~v~d~~~~~~------------~~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~v  253 (393)
                      .+.  ++      +.+|++ +.|++|++||+..+..            ..+.+|...|.+++|+++ .|++|+.||+|++
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~l  291 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAE  291 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEE
Confidence            433  33      457775 4889999999987642            256788999999999876 9999999999999


Q ss_pred             EEeccCCccccCceeecCceeeEEEE--EEc--C-CEEEEecCCCcEEEeeCCCcceeeEeccCcc--ceEEEEEc--CC
Q 016224          254 WKFNVTTNCFEPAASLKGHSLAVVSL--VVG--A-NKLYSGSMDNSIRVWNLETLQCIQTLTEHTS--VVMSLLCW--DQ  324 (393)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~v~~l--~~~--~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~l~~~--~~  324 (393)
                      ||++++.   .+...+.+|...|.++  .+.  + .+|++++.|++|+|||+++++++.++.+|..  .|.+++|+  ++
T Consensus       292 WD~~~~~---~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~  368 (524)
T 2j04_B          292 FDLTDPE---VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIY  368 (524)
T ss_dssp             EETTBCS---SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTT
T ss_pred             EECCCCC---CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcC
Confidence            9998753   3455678899999999  344  4 6899999999999999999998888877754  47888998  56


Q ss_pred             EEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          325 FLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       325 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      .|++++.|++|++||+++...+..+..|..  .|.+++|+|+++   +|++|+.||+|++||+..
T Consensus       369 ~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~--~V~sva~Sp~g~---~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          369 SYIYSDGASSLRAVPSRAAFAVHPLVSRET--TITAIGVSRLHP---MVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             EEEEECSSSEEEEEETTCTTCCEEEEECSS--CEEEEECCSSCC---BCEEEETTTEEECCBSCS
T ss_pred             eEEEeCCCCcEEEEECcccccceeeecCCC--ceEEEEeCCCCC---eEEEEECCCEEEEEechH
Confidence            899999999999999998887777776554  599999998766   899999999999999754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.96  E-value=4.3e-29  Score=232.38  Aligned_cols=235  Identities=12%  Similarity=0.065  Sum_probs=182.7

Q ss_pred             ecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC--eEEEEEecC-CceEEE--EeCCCEEEEE-cCCeEEEEECCC
Q 016224          146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG--QCAGVINLG-GEVGCM--ISEGPWIFIG-VTNFVKAWNTQT  219 (393)
Q Consensus       146 l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~-~~~~~~--~~~~~~l~~~-~~~~i~v~d~~~  219 (393)
                      ++.|..+|++++|+|++++|++++.|+.|+|||+.++  +.+..+..+ ..+.++  .+++++|+++ .|+.|++||+.+
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            3446789999999999999999999999999999988  666666544 344444  3567777665 789999999998


Q ss_pred             Cc----eeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecC-ceeeEEEEEEc--CCEEEEec
Q 016224          220 NT----DLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKG-HSLAVVSLVVG--ANKLYSGS  290 (393)
Q Consensus       220 ~~----~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~-~~~~v~~l~~~--~~~l~sg~  290 (393)
                      +.    ...+..|...|.+++|+++  +|++++.|+.|++||++.... ......+.. |...|.+++++  +++|++++
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~  165 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND-WWVSKHLKRPLRSTILSLDWHPNNVLLAAGC  165 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC------CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc-ceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence            87    4477889999999999987  899999999999999987642 124566666 99999999996  55899999


Q ss_pred             CCCcEEEeeCC------------------CcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcc----e
Q 016224          291 MDNSIRVWNLE------------------TLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGN----L  346 (393)
Q Consensus       291 ~dg~i~iwd~~------------------~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~----~  346 (393)
                      .|+.|++||++                  .++++..+ .|...|.+++|+  +++|++++.|+.|++||+.+.+.    +
T Consensus       166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  244 (377)
T 3dwl_C          166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRAL  244 (377)
T ss_dssp             SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEEC
T ss_pred             CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceee
Confidence            99999999985                  45677777 899999999998  67999999999999999998876    4


Q ss_pred             EEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          347 EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       347 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      ..+..|.  ..+.+++|+|++.   +|++++.|+.+ +|+..
T Consensus       245 ~~~~~~~--~~v~~~~~s~~~~---~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          245 ITVKLSQ--LPLRSLLWANESA---IVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             CCEECSS--SCEEEEEEEETTE---EEEEESSSSEE-EECCC
T ss_pred             EeecCCC--CceEEEEEcCCCC---EEEEEcCCcEE-EEEeC
Confidence            4555544  3599999999865   88888776665 66654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=2e-27  Score=219.48  Aligned_cols=250  Identities=14%  Similarity=0.179  Sum_probs=195.0

Q ss_pred             EECCCCcEEEEEecCCcCCEEEEEecCC---CCEEEEEeCCCcEEEEECCC-CeEE-EEEec-CCceEEEE--eCCCEEE
Q 016224          134 WTVGDGFKLLTQLEGHQKVVSGITLPSG---SDKLYSGSKDETVRVWDCAS-GQCA-GVINL-GGEVGCMI--SEGPWIF  205 (393)
Q Consensus       134 wd~~~~~~~~~~l~~h~~~I~~i~~s~~---~~~l~s~s~dg~v~iwd~~~-~~~~-~~~~~-~~~~~~~~--~~~~~l~  205 (393)
                      |+.... +.+..+.+|.+.|++|+|+|+   +++|++|+.||.|+|||+.+ ++.+ ..+.. ...+.++.  +++.+|+
T Consensus        24 ~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  102 (368)
T 3mmy_A           24 DNHNPM-KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF  102 (368)
T ss_dssp             CSSCTT-CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             CCCCCc-ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence            344443 778889999999999999999   59999999999999999987 5544 44543 44554443  5777777


Q ss_pred             EE-cCCeEEEEECCCCceeeecCCCCcEEEEEE--eCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEE
Q 016224          206 IG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAV--GND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLV  280 (393)
Q Consensus       206 ~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~--~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~  280 (393)
                      ++ .|+.|++||+.+++...+..|...|.+++|  +++  +|++++.|+.|++||++..    +....+..+ ..+.++.
T Consensus       103 s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~-~~~~~~~  177 (368)
T 3mmy_A          103 TASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS----NPMMVLQLP-ERCYCAD  177 (368)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS----SCSEEEECS-SCEEEEE
T ss_pred             EEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC----cEEEEEecC-CCceEEE
Confidence            65 789999999999998888899999999999  676  7999999999999999886    445555554 3677888


Q ss_pred             EcCCEEEEecCCCcEEEeeCCCcceeeEe----ccCccceEEEEEcCC----EEEEEeCCCcEEEEEcCCC---cceEEE
Q 016224          281 VGANKLYSGSMDNSIRVWNLETLQCIQTL----TEHTSVVMSLLCWDQ----FLLSCSLDKTIKVWFATDS---GNLEVT  349 (393)
Q Consensus       281 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~l~~~~~----~l~s~s~dg~i~iwd~~~~---~~~~~~  349 (393)
                      +.+..+++++.++.+++||++........    ..+...+.++.....    .+++++.|+.|++||+...   .....+
T Consensus       178 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~  257 (368)
T 3mmy_A          178 VIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF  257 (368)
T ss_dssp             EETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE
T ss_pred             ecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee
Confidence            88889999999999999999875443222    123334444444443    3999999999999999876   344555


Q ss_pred             EeecCC----------ccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          350 YTHNEE----------HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       350 ~~~~~~----------~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      ..+...          ..+.+++|+|++.   +|++++.||.|++||+.++++
T Consensus       258 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~---~l~s~~~dg~i~iwd~~~~~~  307 (368)
T 3mmy_A          258 KCHRSNGTNTSAPQDIYAVNGIAFHPVHG---TLATVGSDGRFSFWDKDARTK  307 (368)
T ss_dssp             ECSEEC----CCCEEECCEEEEEECTTTC---CEEEEETTSCEEEEETTTTEE
T ss_pred             eeeecccccccccccccceEEEEEecCCC---EEEEEccCCeEEEEECCCCcE
Confidence            544331          1589999988765   899999999999999998764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.1e-27  Score=214.45  Aligned_cols=249  Identities=12%  Similarity=0.060  Sum_probs=178.6

Q ss_pred             ceEEeeEec-C---cEEEecCCCeEEEEECCCC--cEEEEEecCCcCCEEEEEecC------------------------
Q 016224          111 DILCRNWVQ-G---NCMYGEKCKFLHSWTVGDG--FKLLTQLEGHQKVVSGITLPS------------------------  160 (393)
Q Consensus       111 ~i~c~~~~~-~---~~~~g~~dg~i~vwd~~~~--~~~~~~l~~h~~~I~~i~~s~------------------------  160 (393)
                      ++.++.|-. +   -++.......|++|+..++  ++++++++.|+.+|..|.+.|                        
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s  120 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS  120 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred             EEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence            556666742 2   2666777889999999876  378889999887666666655                        


Q ss_pred             -C----CCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEE---cCCeEEEEECCC-Ccee-eecCCCC
Q 016224          161 -G----SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIG---VTNFVKAWNTQT-NTDL-SLSGPVG  230 (393)
Q Consensus       161 -~----~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~i~v~d~~~-~~~~-~~~~~~~  230 (393)
                       +    ++++++++.+  +++|++                   ++++++.++   .++.|++|++.. ++.+ .+..|..
T Consensus       121 pd~~~~~~~l~s~g~~--~~v~~l-------------------~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~  179 (356)
T 2w18_A          121 SDDESEKQVLLKSGNI--KAVLGL-------------------TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPP  179 (356)
T ss_dssp             -----CCEEEEEEEEE--EEEEEE-------------------TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCC
T ss_pred             CCccccccEEEeCCCe--EEEEec-------------------CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCC
Confidence             4    4444444422  444443                   344455554   488999999954 6554 6667777


Q ss_pred             cEEEEEEeC-----CEEEEEeCCCcEEEEEeccCCccccCceeecCce---eeEEEEEE--cCCEE------------EE
Q 016224          231 QVYAMAVGN-----DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHS---LAVVSLVV--GANKL------------YS  288 (393)
Q Consensus       231 ~v~~l~~~~-----~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~---~~v~~l~~--~~~~l------------~s  288 (393)
                      .+..++|++     ++|++++.|++|++||+.++    +.+..+.+|.   ..+.+++|  ++.++            ++
T Consensus       180 ~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG----k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laS  255 (356)
T 2w18_A          180 EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG----QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESL  255 (356)
T ss_dssp             SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC----CEEEEEECCC---CCCEEEEEEETTEEEEEEC----------
T ss_pred             ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC----cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeec
Confidence            777777776     39999999999999999987    5556665543   24444444  44444            67


Q ss_pred             ecCCCcEEEeeCCCcceeeEe-----ccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEe
Q 016224          289 GSMDNSIRVWNLETLQCIQTL-----TEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCG  363 (393)
Q Consensus       289 g~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  363 (393)
                      |+.|++|++||..+++.+..+     .+|...+.+..+++.++++++.|++|+|||+.+++.+..+..|... .+..++|
T Consensus       256 Gs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~-vvs~vaf  334 (356)
T 2w18_A          256 RSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQ-HWSFVKW  334 (356)
T ss_dssp             --CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--C-CCCEEEE
T ss_pred             cCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCC-eEEEEEE
Confidence            889999999999999988766     4677667777777889999999999999999999888887665543 2335789


Q ss_pred             eeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          364 MPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       364 ~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      +|++.   +|++|+.|++|+|||+.
T Consensus       335 SPDG~---~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          335 SGTDS---HLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             CSSSS---EEEEECTTSCEEEEEEC
T ss_pred             CCCCC---EEEEEECCCcEEEecCC
Confidence            88766   99999999999999963

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.96  E-value=7.7e-27  Score=220.83  Aligned_cols=235  Identities=22%  Similarity=0.313  Sum_probs=187.0

Q ss_pred             eeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC-e
Q 016224          107 VIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG-Q  183 (393)
Q Consensus       107 ~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~-~  183 (393)
                      .|...|+|++|++++  +++|+.|+.|+|||+.++ +.+..+.+|...|.+++++  +.+|++|+.|+.+++||.... .
T Consensus       145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~-~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~  221 (420)
T 4gga_A          145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEH  221 (420)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC-cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccce
Confidence            455689999999873  567999999999999998 8999999999999998875  679999999999999998864 4


Q ss_pred             EEEEEecCCc-eEE--EEeCCCEEEEE-cCCeEEEEECCCCce-----eeecCCCCcEEEEEEeCC---EEEE--EeCCC
Q 016224          184 CAGVINLGGE-VGC--MISEGPWIFIG-VTNFVKAWNTQTNTD-----LSLSGPVGQVYAMAVGND---LLFA--GTQDG  249 (393)
Q Consensus       184 ~~~~~~~~~~-~~~--~~~~~~~l~~~-~~~~i~v~d~~~~~~-----~~~~~~~~~v~~l~~~~~---~l~~--~~~dg  249 (393)
                      .+..+..+.. +..  +.+++.+++++ .|+.+++|+..+++.     .....|...|.+++|+|.   ++++  |+.|+
T Consensus       222 ~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~  301 (420)
T 4gga_A          222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR  301 (420)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTC
T ss_pred             eeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCC
Confidence            4555554433 322  23577777765 889999999987653     256788999999999886   5555  45799


Q ss_pred             cEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEe--cCCCcEEEeeCCCcceeeEeccCccceEEEEEc--C
Q 016224          250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSG--SMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--D  323 (393)
Q Consensus       250 ~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~  323 (393)
                      .|++||+.++    .....+..| ..+.++.+.  ++.++++  +.|+.|+|||+.+++++.++.+|...|++++|+  +
T Consensus       302 ~I~iwd~~t~----~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg  376 (420)
T 4gga_A          302 HIRIWNVCSG----ACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG  376 (420)
T ss_dssp             EEEEEETTTT----EEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred             EEEEEeCCcc----ccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence            9999999887    444455444 456666664  5566654  479999999999999999999999999999998  6


Q ss_pred             CEEEEEeCCCcEEEEEcCCCcceEEE
Q 016224          324 QFLLSCSLDKTIKVWFATDSGNLEVT  349 (393)
Q Consensus       324 ~~l~s~s~dg~i~iwd~~~~~~~~~~  349 (393)
                      ++|+||+.|++|+|||+.+.......
T Consensus       377 ~~l~S~s~D~tvriWdv~~~~~~~~~  402 (420)
T 4gga_A          377 ATVASAAADETLRLWRCFELDPARRR  402 (420)
T ss_dssp             SCEEEEETTTEEEEECCSCSSCC---
T ss_pred             CEEEEEecCCeEEEEECCCCCccchh
Confidence            79999999999999999766554443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.96  E-value=4.1e-27  Score=221.33  Aligned_cols=237  Identities=20%  Similarity=0.344  Sum_probs=195.7

Q ss_pred             EEecCCcCC--EEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEec--CCceEEEE--eCCCEEEEE-cCCeEEEEE
Q 016224          144 TQLEGHQKV--VSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL--GGEVGCMI--SEGPWIFIG-VTNFVKAWN  216 (393)
Q Consensus       144 ~~l~~h~~~--I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~--~~~~~~~~--~~~~~l~~~-~~~~i~v~d  216 (393)
                      ....+|...  +.+++|++  ..+++++.|+.|++||+.+++....+..  ...+.++.  +++.+|+++ .++.|++||
T Consensus        85 ~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd  162 (401)
T 4aez_A           85 LDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYD  162 (401)
T ss_dssp             EECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEE
Confidence            344556554  45566664  5688899999999999999998888776  34454443  578888876 789999999


Q ss_pred             CCCCcee-eecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCC
Q 016224          217 TQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDN  293 (393)
Q Consensus       217 ~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg  293 (393)
                      +.+++.+ .+..|...|.+++|++++|++++.||.|++||++...   .....+..|...|.+++++  +++|++++.|+
T Consensus       163 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~  239 (401)
T 4aez_A          163 VESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN---HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN  239 (401)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS---CEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCc---ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence            9998877 7779999999999999999999999999999998543   4566778899999999996  56999999999


Q ss_pred             cEEEeeCCCcceeeEeccCccceEEEEEcC---CEEEEEe--CCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCC
Q 016224          294 SIRVWNLETLQCIQTLTEHTSVVMSLLCWD---QFLLSCS--LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE  368 (393)
Q Consensus       294 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~---~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  368 (393)
                      .|++||+++++++..+..|...|.+++|++   .++++++  .|+.|++||+.+++.+..+.   ....+.+++|+|++.
T Consensus       240 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~~s~~~~  316 (401)
T 4aez_A          240 VVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD---AGSQVTSLIWSPHSK  316 (401)
T ss_dssp             CEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE---CSSCEEEEEECSSSS
T ss_pred             eEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe---CCCcEEEEEECCCCC
Confidence            999999999999999999999999999983   5777765  79999999999887666553   234599999988766


Q ss_pred             CCcEEEEE--eCCCeEEEEeCCcee
Q 016224          369 GKPVLLCS--CNDNSVRFYDLPSVI  391 (393)
Q Consensus       369 ~~~~l~s~--s~dg~I~iwd~~s~~  391 (393)
                         +|+++  +.||.|++||+++++
T Consensus       317 ---~l~~~~g~~dg~i~v~~~~~~~  338 (401)
T 4aez_A          317 ---EIMSTHGFPDNNLSIWSYSSSG  338 (401)
T ss_dssp             ---EEEEEECTTTCEEEEEEEETTE
T ss_pred             ---eEEEEeecCCCcEEEEecCCcc
Confidence               78884  489999999998753

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.96  E-value=1.7e-28  Score=223.36  Aligned_cols=206  Identities=19%  Similarity=0.238  Sum_probs=161.8

Q ss_pred             EecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceee
Q 016224          145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLS  224 (393)
Q Consensus       145 ~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~  224 (393)
                      .+.+|...|++++|+|++++|++|+.|++|+|||+.+++....                                   ..
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~-----------------------------------~~   52 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILI-----------------------------------AD   52 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEE-----------------------------------EE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEE-----------------------------------EE
Confidence            5578999999999999999999999999999999987643211                                   13


Q ss_pred             ecCCCCcEEEEEEeC----CEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC----CEEEEecCCCcEE
Q 016224          225 LSGPVGQVYAMAVGN----DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA----NKLYSGSMDNSIR  296 (393)
Q Consensus       225 ~~~~~~~v~~l~~~~----~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~l~sg~~dg~i~  296 (393)
                      +.+|...|.+++|++    ++|++++.|++|++||++.+..  .....+.+|...|.+++|++    .+|++++.|++|+
T Consensus        53 l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~--~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~  130 (316)
T 3bg1_A           53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW--EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAIS  130 (316)
T ss_dssp             EECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC--CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEE
T ss_pred             EcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc--eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEE
Confidence            568999999999964    3999999999999999986531  34456778999999999964    4899999999999


Q ss_pred             EeeCCCcc---eeeEeccCccceEEEEEcC-------------------CEEEEEeCCCcEEEEEcCCCcc---eEEEEe
Q 016224          297 VWNLETLQ---CIQTLTEHTSVVMSLLCWD-------------------QFLLSCSLDKTIKVWFATDSGN---LEVTYT  351 (393)
Q Consensus       297 iwd~~~~~---~~~~~~~~~~~v~~l~~~~-------------------~~l~s~s~dg~i~iwd~~~~~~---~~~~~~  351 (393)
                      +||+++..   ....+.+|...+.++.|++                   ++|++++.|++|++||++....   ...+..
T Consensus       131 lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~  210 (316)
T 3bg1_A          131 LLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA  210 (316)
T ss_dssp             EEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBC
T ss_pred             EEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeeccc
Confidence            99998753   2456678999999999874                   4799999999999999975532   222333


Q ss_pred             ecCCccEEEEEeeeCCC-CCcEEEEEeCCCeEEEEeCCc
Q 016224          352 HNEEHGVLALCGMPDSE-GKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       352 ~~~~~~v~~~~~~~~~~-~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      |  ...|.+++|+|+.. +..+|++++.|++|++|++.+
T Consensus       211 h--~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          211 H--SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             C--SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             C--CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence            3  34699999999751 234899999999999999876

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.4e-27  Score=219.66  Aligned_cols=253  Identities=10%  Similarity=0.058  Sum_probs=189.7

Q ss_pred             cCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECC---------CCeEEEEEe
Q 016224          119 QGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA---------SGQCAGVIN  189 (393)
Q Consensus       119 ~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~---------~~~~~~~~~  189 (393)
                      ...+++|+.||.|++||+.++ +.+..+.  ...|.++.|+|+   +++++.|++|++|+..         +++.+..+.
T Consensus        48 ~~~l~sg~~Dg~v~iwd~~~~-~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~  121 (343)
T 3lrv_A           48 KWVCMCRCEDGALHFTQLKDS-KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE  121 (343)
T ss_dssp             EEEEEEEEETTEEEEEEESSS-SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEECCCCcEEEEECCCC-cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence            335678999999999999988 6666665  567888889888   9999999999999665         555555555


Q ss_pred             cC--CceEEEE--e--CCCEEEE-EcCCeEEEEECCCCceeee--cCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEecc
Q 016224          190 LG--GEVGCMI--S--EGPWIFI-GVTNFVKAWNTQTNTDLSL--SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV  258 (393)
Q Consensus       190 ~~--~~~~~~~--~--~~~~l~~-~~~~~i~v~d~~~~~~~~~--~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~  258 (393)
                      ..  ..+.++.  +  ++.++++ +.|+.|++||+++++....  ..+...|.+++|+|+  +|++|+.||.|++||+++
T Consensus       122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~  201 (343)
T 3lrv_A          122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS  201 (343)
T ss_dssp             CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC
T ss_pred             cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence            33  3455544  4  6777775 4889999999999988633  345668999999998  999999999999999998


Q ss_pred             CCccccCc-eeecC-ceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEecc---CccceE--EEEEc--CCEEE
Q 016224          259 TTNCFEPA-ASLKG-HSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTE---HTSVVM--SLLCW--DQFLL  327 (393)
Q Consensus       259 ~~~~~~~~-~~~~~-~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---~~~~v~--~l~~~--~~~l~  327 (393)
                      ..    .. ..+.. |...|.+++|+  +.+|++++ |+.|++||+++++.+..+..   |...+.  +++|+  +++|+
T Consensus       202 ~~----~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~  276 (343)
T 3lrv_A          202 PD----QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI  276 (343)
T ss_dssp             TT----SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred             CC----CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence            74    33 55666 99999999996  45899998 55999999999887666554   434443  58887  78999


Q ss_pred             EEeC-CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          328 SCSL-DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       328 s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      +++. |+.|+||++.+.......      ..+..+.|.+...+...|++++.||.+.++-..
T Consensus       277 ~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          277 AYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             EEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             EecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEEecCCceEEEEec
Confidence            9998 999999999765543332      246677777744455589999999999887543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=2.1e-27  Score=222.71  Aligned_cols=226  Identities=12%  Similarity=0.110  Sum_probs=158.3

Q ss_pred             cEEEecCCCeEEEEECCCCcE----EEEEecCCcCCEEEEEecC--------CCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 016224          121 NCMYGEKCKFLHSWTVGDGFK----LLTQLEGHQKVVSGITLPS--------GSDKLYSGSKDETVRVWDCASGQCAGVI  188 (393)
Q Consensus       121 ~~~~g~~dg~i~vwd~~~~~~----~~~~l~~h~~~I~~i~~s~--------~~~~l~s~s~dg~v~iwd~~~~~~~~~~  188 (393)
                      .+++|+.|++|+|||+.++..    .+..+.+|.+.|.+|+|+|        |+++|||++.|++|+|||+.++..+.. 
T Consensus       103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~-  181 (393)
T 4gq1_A          103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA-  181 (393)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE-
T ss_pred             EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee-
Confidence            356799999999999987722    2334689999999999987        789999999999999999987765433 


Q ss_pred             ecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccC
Q 016224          189 NLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEP  265 (393)
Q Consensus       189 ~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~  265 (393)
                                                          +..|...|.+++|+|+   +|++++.|++|++||++++......
T Consensus       182 ------------------------------------~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~  225 (393)
T 4gq1_A          182 ------------------------------------GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEEN  225 (393)
T ss_dssp             ------------------------------------EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----
T ss_pred             ------------------------------------ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccc
Confidence                                                3456778889999986   7889999999999998775432111


Q ss_pred             c---------------------eeecCceeeEEEEEE---cCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEE
Q 016224          266 A---------------------ASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC  321 (393)
Q Consensus       266 ~---------------------~~~~~~~~~v~~l~~---~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~  321 (393)
                      .                     ....+|...+.++.+   ++.+|++++.|+++++||+.+++....+..|...+..+.+
T Consensus       226 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~  305 (393)
T 4gq1_A          226 SQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNL  305 (393)
T ss_dssp             -----CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CC
T ss_pred             cccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEE
Confidence            1                     112356667777776   4679999999999999999988877777666554433322


Q ss_pred             ------------------c----CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC
Q 016224          322 ------------------W----DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND  379 (393)
Q Consensus       322 ------------------~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d  379 (393)
                                        .    +.++++|+.|++|+|||+.++........+..  .|.+++|+|++.   +|++++.|
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~---~LA~as~~  380 (393)
T 4gq1_A          306 LPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGS---HLAIATEG  380 (393)
T ss_dssp             SCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSS---EEEEEESS
T ss_pred             ccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCC---EEEEEeCC
Confidence                              2    22677888999999999998887777666554  599999998876   99999876


Q ss_pred             CeEEEEeCCc
Q 016224          380 NSVRFYDLPS  389 (393)
Q Consensus       380 g~I~iwd~~s  389 (393)
                      | +.+|.+..
T Consensus       381 G-v~lvrL~g  389 (393)
T 4gq1_A          381 S-VLLTRLMG  389 (393)
T ss_dssp             E-EEEEEEGG
T ss_pred             C-eEEEEEeC
Confidence            6 66666543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=1.7e-25  Score=211.93  Aligned_cols=267  Identities=13%  Similarity=0.142  Sum_probs=209.6

Q ss_pred             cceEEeeEecCcE--EEecCCCeEEEEECCCCcEEEE-----EecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224          110 TDILCRNWVQGNC--MYGEKCKFLHSWTVGDGFKLLT-----QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       110 ~~i~c~~~~~~~~--~~g~~dg~i~vwd~~~~~~~~~-----~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      ..+.++.|++++.  ++++.++.|++||+.++ +.+.     .+.+|...|.+++|+++++++++++.|+.|++||++++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~  201 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSG-QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL  201 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTC-CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCC-eEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc
Confidence            3566899987643  34677889999999988 6666     45589999999999999999999999999999999999


Q ss_pred             eEEEEEecCC-ceE--EEEeCCCEEE-EE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEe--------C
Q 016224          183 QCAGVINLGG-EVG--CMISEGPWIF-IG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT--------Q  247 (393)
Q Consensus       183 ~~~~~~~~~~-~~~--~~~~~~~~l~-~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~--------~  247 (393)
                      +.+..+..+. .+.  .+.+++..++ ++ .++.|++||+.+++..........+.+++|+++  .|++++        .
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~  281 (433)
T 3bws_A          202 AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESG  281 (433)
T ss_dssp             CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred             eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccC
Confidence            9888887443 333  3446777775 45 578999999999988766566677999999987  777776        5


Q ss_pred             CCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CC-EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--
Q 016224          248 DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--AN-KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--  322 (393)
Q Consensus       248 dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--  322 (393)
                      |+.|++||+.++.    .... ..|...+..++++  ++ ++++++.|+.|++||+++++.+..+. +...+.+++++  
T Consensus       282 dg~i~~~d~~~~~----~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~d  355 (433)
T 3bws_A          282 GGRLGIYSMDKEK----LIDT-IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPD  355 (433)
T ss_dssp             CEEEEEEETTTTE----EEEE-EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTT
T ss_pred             CCeEEEEECCCCc----EEee-ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCC
Confidence            8899999998763    2222 2455677778886  44 45777899999999999999888876 66778899998  


Q ss_pred             CCEEEEEeC---------------CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeC-CCeEEEEe
Q 016224          323 DQFLLSCSL---------------DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN-DNSVRFYD  386 (393)
Q Consensus       323 ~~~l~s~s~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~-dg~I~iwd  386 (393)
                      +++|++++.               ||.|++||+.+++.+..+..   ...+..++|+|++.   +|++++. |+.|++|+
T Consensus       356 g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~---~l~~~~~~d~~i~v~~  429 (433)
T 3bws_A          356 GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---GNQPTGLDVSPDNR---YLVISDFLDHQIRVYR  429 (433)
T ss_dssp             SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSC---EEEEEETTTTEEEEEE
T ss_pred             CCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---CCCCceEEEcCCCC---EEEEEECCCCeEEEEE
Confidence            567887776               57999999988776665544   33588999988755   7777764 99999999


Q ss_pred             CCc
Q 016224          387 LPS  389 (393)
Q Consensus       387 ~~s  389 (393)
                      +..
T Consensus       430 ~~~  432 (433)
T 3bws_A          430 RDG  432 (433)
T ss_dssp             ETT
T ss_pred             ecC
Confidence            875

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.95  E-value=1.9e-25  Score=202.29  Aligned_cols=229  Identities=22%  Similarity=0.297  Sum_probs=181.5

Q ss_pred             eeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-
Q 016224          107 VIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ-  183 (393)
Q Consensus       107 ~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~-  183 (393)
                      .|...|+|++|+++  .+++|+.|++|++||+.++ +.+..+.+|...+.++.+.  +.+|++++.++.+++|+..... 
T Consensus        65 ~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~-~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~  141 (318)
T 4ggc_A           65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEH  141 (318)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC
T ss_pred             CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc-eeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCce
Confidence            46668999999986  3668999999999999999 8999999999999876654  6799999999999999988764 


Q ss_pred             EEEEEecCC-ceEEE--EeCCCEEEEE-cCCeEEEEECCCCcee-----eecCCCCcEEEEEEeCC-----EEEEEeCCC
Q 016224          184 CAGVINLGG-EVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTDL-----SLSGPVGQVYAMAVGND-----LLFAGTQDG  249 (393)
Q Consensus       184 ~~~~~~~~~-~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~~-----~~~~~~~~v~~l~~~~~-----~l~~~~~dg  249 (393)
                      .+..+..+. .+...  ..++.+++++ .|+.|++||+.+++..     ....+...|.++.+.+.     .+++++.++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  221 (318)
T 4ggc_A          142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR  221 (318)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTC
T ss_pred             eEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCC
Confidence            444444433 33333  3577777765 8899999999887532     55678889999999876     345677899


Q ss_pred             cEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEE--ecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--C
Q 016224          250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYS--GSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--D  323 (393)
Q Consensus       250 ~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s--g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~  323 (393)
                      .|++||......     .....+...+..+.+.  ++.+++  ++.|+.|++||+++++++.++.+|...|++++|+  +
T Consensus       222 ~i~lwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg  296 (318)
T 4ggc_A          222 HIRIWNVCSGAC-----LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG  296 (318)
T ss_dssp             EEEEEETTTCCE-----EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred             EEEEEecccccc-----cccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence            999999887532     2223345556666664  555554  4589999999999999999999999999999998  6


Q ss_pred             CEEEEEeCCCcEEEEEcCCC
Q 016224          324 QFLLSCSLDKTIKVWFATDS  343 (393)
Q Consensus       324 ~~l~s~s~dg~i~iwd~~~~  343 (393)
                      ++|++|+.|++|+|||+.+.
T Consensus       297 ~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          297 ATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             SCEEEEETTTEEEEECCSCC
T ss_pred             CEEEEEecCCeEEEEECCCC
Confidence            79999999999999999754

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.2e-26  Score=211.59  Aligned_cols=213  Identities=17%  Similarity=0.194  Sum_probs=170.7

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCC
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN  220 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~  220 (393)
                      +++..+.+|...|++++|+|++++|++++.||.|+|||+........                                 
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~---------------------------------   48 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI---------------------------------   48 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE---------------------------------
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceee---------------------------------
Confidence            45667889999999999999999999999999999999874332111                                 


Q ss_pred             ceeeecCCCCcEEEEEEeC----CEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc----CCEEEEecCC
Q 016224          221 TDLSLSGPVGQVYAMAVGN----DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG----ANKLYSGSMD  292 (393)
Q Consensus       221 ~~~~~~~~~~~v~~l~~~~----~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~----~~~l~sg~~d  292 (393)
                        ..+..|...|.+++|++    ++|++++.||.|++||+..+..  .....+..|...|.+++|+    +++|++++.|
T Consensus        49 --~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  124 (379)
T 3jrp_A           49 --DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW--SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD  124 (379)
T ss_dssp             --EEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             --eEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce--eEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence              13467889999999973    4999999999999999988631  3566777899999999996    5589999999


Q ss_pred             CcEEEeeCCCcc--eeeEeccCccceEEEEEcC---------------CEEEEEeCCCcEEEEEcCCCcceEEEE--eec
Q 016224          293 NSIRVWNLETLQ--CIQTLTEHTSVVMSLLCWD---------------QFLLSCSLDKTIKVWFATDSGNLEVTY--THN  353 (393)
Q Consensus       293 g~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~---------------~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~  353 (393)
                      +.|++||+++..  ....+..|...|.++.|++               .+|++++.|+.|++||+++........  ...
T Consensus       125 ~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  204 (379)
T 3jrp_A          125 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG  204 (379)
T ss_dssp             SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred             CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec
Confidence            999999998873  4456678999999999974               689999999999999998765432221  122


Q ss_pred             CCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          354 EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       354 ~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      +...+.+++|+|+...+.+|++++.||.|++||+.++
T Consensus       205 h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          205 HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence            3456999999988322349999999999999999875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.1e-25  Score=214.87  Aligned_cols=234  Identities=12%  Similarity=0.123  Sum_probs=187.7

Q ss_pred             cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe---EEEEEecCC----------------------------------
Q 016224          150 QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ---CAGVINLGG----------------------------------  192 (393)
Q Consensus       150 ~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~---~~~~~~~~~----------------------------------  192 (393)
                      ..++.+++|+++|++|+++ .++.|++||+.+++   .+..+....                                  
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3578899999999966665 57899999999998   665554321                                  


Q ss_pred             ---------------------ceEEE--EeCCCEE-EEE-cCCeEEEEECC--CCcee-eec--CCCCcEEEEEEeCC--
Q 016224          193 ---------------------EVGCM--ISEGPWI-FIG-VTNFVKAWNTQ--TNTDL-SLS--GPVGQVYAMAVGND--  240 (393)
Q Consensus       193 ---------------------~~~~~--~~~~~~l-~~~-~~~~i~v~d~~--~~~~~-~~~--~~~~~v~~l~~~~~--  240 (393)
                                           .+.++  .+++++| +++ .|+.|++|++.  +++.+ .+.  .+...|.+++|+|+  
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                                 23333  3578885 666 78999999999  76665 333  67789999999998  


Q ss_pred             EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC-----EEEEecCCCcEEEeeCCCcceeeE-eccCcc
Q 016224          241 LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN-----KLYSGSMDNSIRVWNLETLQCIQT-LTEHTS  314 (393)
Q Consensus       241 ~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----~l~sg~~dg~i~iwd~~~~~~~~~-~~~~~~  314 (393)
                      +|++++.+|.|++|++............+.+|...|.+++|+++     +|++++.|+.|++||+++++.+.. +.+|..
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~  242 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH  242 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence            99999999999999998764321134466778899999988644     899999999999999999998887 568999


Q ss_pred             ceEEEEEc-CCEEEEEeCCCcEEEEEcCCCcceEEEEee-----------------------cCCccEEEEEeeeCCCCC
Q 016224          315 VVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTH-----------------------NEEHGVLALCGMPDSEGK  370 (393)
Q Consensus       315 ~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~~~~~~~~~~~~  370 (393)
                      .|.+++|+ +++|++++.|+.|++||+.+++.+..+..+                       .....+..+.|+|+..  
T Consensus       243 ~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--  320 (450)
T 2vdu_B          243 FVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP--  320 (450)
T ss_dssp             CEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS--
T ss_pred             ceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC--
Confidence            99999996 889999999999999999988877666532                       2234588899988655  


Q ss_pred             cEEEEEe-CCCeEEEEeC
Q 016224          371 PVLLCSC-NDNSVRFYDL  387 (393)
Q Consensus       371 ~~l~s~s-~dg~I~iwd~  387 (393)
                       +|++++ .|+.|++|++
T Consensus       321 -~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          321 -FVAFFVEATKCIIILEM  337 (450)
T ss_dssp             -EEEEEETTCSEEEEEEE
T ss_pred             -EEEEEECCCCeEEEEEe
Confidence             888888 8999999999

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.4e-26  Score=220.10  Aligned_cols=260  Identities=9%  Similarity=-0.007  Sum_probs=193.2

Q ss_pred             eecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEE
Q 016224          108 IKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA  185 (393)
Q Consensus       108 ~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  185 (393)
                      ...-|.+++|++|+  +++++.|++|+  |...+    ..+++|...|.+++|+|+|       .++++.+|+.+..+ .
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~----~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-~   79 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA----KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-L   79 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCC----SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-S
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--ccccc----ceecCCCccEEEEEECCCC-------CcceEEEEeCCCce-E
Confidence            34578999999985  45789999999  75554    3458999999999999998       56666666644322 2


Q ss_pred             EEEecCCceEE--EEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCC-----cEEEEEEeCC--EEEEEeCCCcEEEE
Q 016224          186 GVINLGGEVGC--MISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVG-----QVYAMAVGND--LLFAGTQDGAILAW  254 (393)
Q Consensus       186 ~~~~~~~~~~~--~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~-----~v~~l~~~~~--~l~~~~~dg~I~vw  254 (393)
                      ..+.....+.+  +.++|..|+++ .++.|++|+.+.  .+ .+. |..     .|.+++|+|+  +|++|+.||+|++|
T Consensus        80 ~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW  156 (588)
T 2j04_A           80 LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF  156 (588)
T ss_dssp             STTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence            22222333433  34688877765 889999999655  33 344 554     5999999999  99999999999999


Q ss_pred             EeccCCcc---ccCceee----cCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcce---eeEe-ccCccceEEEEEcC
Q 016224          255 KFNVTTNC---FEPAASL----KGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQC---IQTL-TEHTSVVMSLLCWD  323 (393)
Q Consensus       255 d~~~~~~~---~~~~~~~----~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~---~~~~-~~~~~~v~~l~~~~  323 (393)
                      |+..+...   +-.+..+    .+|...|.+++|+++-+++++.|++|++||+.+++.   .+++ .+|...|.+++|++
T Consensus       157 d~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg  236 (588)
T 2j04_A          157 SIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVD  236 (588)
T ss_dssp             ECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEET
T ss_pred             ECCCCccccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEEC
Confidence            99876320   0123444    678889999999866699999999999999988774   3567 47889999999998


Q ss_pred             CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          324 QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       324 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      +.|++++ +++|++||+.+........+|.  ..+..+.+ |+++++..|+++++||+ ++|...+
T Consensus       237 ~~LASa~-~~tIkLWd~~~~~~~~~~~gh~--~~V~~va~-~~s~d~~~La~a~edG~-klw~~d~  297 (588)
T 2j04_A          237 YKVVLTC-PGYVHKIDLKNYSISSLKTGSL--ENFHIIPL-NHEKESTILLMSNKTSY-KVLLEDE  297 (588)
T ss_dssp             TEEEEEC-SSEEEEEETTTTEEEEEECSCC--SCCCEEEE-TTCSSCEEEEECSSCEE-EEEESSS
T ss_pred             CEEEEEe-CCeEEEEECCCCeEEEEEcCCC--ceEEEEEe-eeCCCCCEEEEEcCCCC-EEEeecc
Confidence            8999987 6999999997655433333444  45777877 22334448999999999 9999753

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.95  E-value=1.2e-25  Score=211.17  Aligned_cols=239  Identities=16%  Similarity=0.194  Sum_probs=185.8

Q ss_pred             cceeecceEEeeEec-C--cEEEecCCCeEEEEECCCCc------EEEEEecCCcCCEEEEEecCCC-CEEEEEeCCCcE
Q 016224          105 RAVIKTDILCRNWVQ-G--NCMYGEKCKFLHSWTVGDGF------KLLTQLEGHQKVVSGITLPSGS-DKLYSGSKDETV  174 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~-~--~~~~g~~dg~i~vwd~~~~~------~~~~~l~~h~~~I~~i~~s~~~-~~l~s~s~dg~v  174 (393)
                      ...|...|++++|++ +  .+++|+.||.|++||+.++.      +.+..+.+|...|++++|+|++ ++|++++.|++|
T Consensus        77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i  156 (402)
T 2aq5_A           77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI  156 (402)
T ss_dssp             BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCE
T ss_pred             EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEE
Confidence            345788999999987 4  46689999999999998762      4577889999999999999998 699999999999


Q ss_pred             EEEECCCCeEEEEE--e-cCCceEEEE--eCCCEEEEE-cCCeEEEEECCCCcee-ee-cCCCCc-EEEEEEeCC--EEE
Q 016224          175 RVWDCASGQCAGVI--N-LGGEVGCMI--SEGPWIFIG-VTNFVKAWNTQTNTDL-SL-SGPVGQ-VYAMAVGND--LLF  243 (393)
Q Consensus       175 ~iwd~~~~~~~~~~--~-~~~~~~~~~--~~~~~l~~~-~~~~i~v~d~~~~~~~-~~-~~~~~~-v~~l~~~~~--~l~  243 (393)
                      ++||+.+++.+..+  . +...+.++.  +++.+++++ .|+.|++||+++++.+ .+ ..|... +..+.|+++  +|+
T Consensus       157 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  236 (402)
T 2aq5_A          157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILT  236 (402)
T ss_dssp             EEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEE
T ss_pred             EEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEE
Confidence            99999999999888  3 334454443  467766665 8899999999998877 44 577665 899999988  777


Q ss_pred             EE---eCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEE-EecCCCcEEEeeCCCcce-eeEecc--Ccc
Q 016224          244 AG---TQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLY-SGSMDNSIRVWNLETLQC-IQTLTE--HTS  314 (393)
Q Consensus       244 ~~---~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~-sg~~dg~i~iwd~~~~~~-~~~~~~--~~~  314 (393)
                      ++   +.|+.|++||++.....  .......|...+.+++++  +++|+ +++.|+.|++||+.+++. +..+..  |..
T Consensus       237 ~g~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~  314 (402)
T 2aq5_A          237 TGFSRMSERQVALWDTKHLEEP--LSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKE  314 (402)
T ss_dssp             EEECTTCCEEEEEEETTBCSSC--SEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSS
T ss_pred             EeccCCCCceEEEEcCccccCC--ceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCC
Confidence            77   69999999999876421  112223466678888876  45665 666899999999998874 555544  458


Q ss_pred             ceEEEEEcCCEEEEEeCCCcEEEEEcCCCcc
Q 016224          315 VVMSLLCWDQFLLSCSLDKTIKVWFATDSGN  345 (393)
Q Consensus       315 ~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~  345 (393)
                      .+.+++|+++..+.++.++.+++|++.+...
T Consensus       315 ~v~~~~~sp~~~~~~s~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          315 SQRGMGYMPKRGLEVNKCEIARFYKLHERKC  345 (402)
T ss_dssp             CCSEEEECCGGGSCGGGTEEEEEEEEETTEE
T ss_pred             cccceEEecccccceecceeEEEEEcCCCcE
Confidence            9999999954323335677999999986543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.9e-26  Score=210.89  Aligned_cols=223  Identities=13%  Similarity=0.031  Sum_probs=166.3

Q ss_pred             ecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECC---------CCcee--eec
Q 016224          158 LPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQ---------TNTDL--SLS  226 (393)
Q Consensus       158 ~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~---------~~~~~--~~~  226 (393)
                      +.+++.+|++|+.||+|++||+.+++.+..+... .+..+.....++.++.|+.|++|+..         +++.+  ...
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~-~v~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~  122 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTITTP-NPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV  122 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEE-CCCTTCCCCSEEEECSTTEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEecC-CceeeeeCCceEEecCCCeEEEEEccCceEEeecCCcceeEEeec
Confidence            4467889999999999999999999888777621 11111111224455578888888655         44433  233


Q ss_pred             CCCCcEEEEEEeC--C--EEEEEeCCCcEEEEEeccCCccccCceee-cCceeeEEEEEEc--CCEEEEecCCCcEEEee
Q 016224          227 GPVGQVYAMAVGN--D--LLFAGTQDGAILAWKFNVTTNCFEPAASL-KGHSLAVVSLVVG--ANKLYSGSMDNSIRVWN  299 (393)
Q Consensus       227 ~~~~~v~~l~~~~--~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd  299 (393)
                      .|...|.+++++|  +  +|++++.||.|++||++++.    ..... ..|...+.+++++  +.+|++|+.|+.|++||
T Consensus       123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~----~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd  198 (343)
T 3lrv_A          123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS----QYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYN  198 (343)
T ss_dssp             CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC----EEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred             CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc----EEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence            6678899999998  5  89999999999999998763    23333 3345568888886  56999999999999999


Q ss_pred             CCCccee-eEecc-CccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEe---ecCCccEEEEEeeeCCCCCcE
Q 016224          300 LETLQCI-QTLTE-HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYT---HNEEHGVLALCGMPDSEGKPV  372 (393)
Q Consensus       300 ~~~~~~~-~~~~~-~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~  372 (393)
                      +++++.+ ..+.. |...|.+++|+  +.+|++++ |+.|++||+++.+.+..+..   +.......+++|+|++.   +
T Consensus       199 ~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~  274 (343)
T 3lrv_A          199 LSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK---N  274 (343)
T ss_dssp             SSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSS---E
T ss_pred             CCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCC---E
Confidence            9999988 88888 99999999998  66999999 55999999998766543332   11111114588887665   9


Q ss_pred             EEEEeC-CCeEEEEeCCc
Q 016224          373 LLCSCN-DNSVRFYDLPS  389 (393)
Q Consensus       373 l~s~s~-dg~I~iwd~~s  389 (393)
                      |++++. |+.|++|++..
T Consensus       275 l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          275 MIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             EEEEETTTTEEEEEEECT
T ss_pred             EEEecCCCCcEEEEEEcc
Confidence            999888 99999998854

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.94  E-value=3.9e-25  Score=202.04  Aligned_cols=214  Identities=13%  Similarity=0.159  Sum_probs=170.0

Q ss_pred             EEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCcee
Q 016224          144 TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL  223 (393)
Q Consensus       144 ~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~  223 (393)
                      ..+.+|.+.|++++|+|++++|++++.||.|++||+.++......                                 ..
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---------------------------------~~   51 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWEL---------------------------------SD   51 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEE---------------------------------EE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCccee---------------------------------cc
Confidence            356899999999999999999999999999999999875322111                                 11


Q ss_pred             eecCCCCcEEEEEEeC---C-EEEEEeCCCcEEEEEeccCCccc-----cCceeecCceeeEEEEEEc----CCEEEEec
Q 016224          224 SLSGPVGQVYAMAVGN---D-LLFAGTQDGAILAWKFNVTTNCF-----EPAASLKGHSLAVVSLVVG----ANKLYSGS  290 (393)
Q Consensus       224 ~~~~~~~~v~~l~~~~---~-~l~~~~~dg~I~vwd~~~~~~~~-----~~~~~~~~~~~~v~~l~~~----~~~l~sg~  290 (393)
                      .+..|...|.+++|++   . +|++++.||.|++||++......     +....+..|...|.+++|+    +++|++++
T Consensus        52 ~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  131 (351)
T 3f3f_A           52 SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG  131 (351)
T ss_dssp             EEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred             eeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec
Confidence            4467899999999987   2 99999999999999998764321     3456677899999999996    55899999


Q ss_pred             CCCcEEEeeCCCcceeeEec-------------cCccceEEEEEc-----CCEEEEEeCCCcEEEEEcCCCcceEEEEee
Q 016224          291 MDNSIRVWNLETLQCIQTLT-------------EHTSVVMSLLCW-----DQFLLSCSLDKTIKVWFATDSGNLEVTYTH  352 (393)
Q Consensus       291 ~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~l~~~-----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  352 (393)
                      .|+.|++||+++++.+..+.             .|...+.++.|+     +.+|++++.|+.+.+|+.............
T Consensus       132 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (351)
T 3f3f_A          132 NDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP  211 (351)
T ss_dssp             TTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC
T ss_pred             CCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC
Confidence            99999999999887665543             577889999996     569999999999988877655442233333


Q ss_pred             cCCccEEEEEeeeCCCC-CcEEEEEeCCCeEEEEeCCce
Q 016224          353 NEEHGVLALCGMPDSEG-KPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       353 ~~~~~v~~~~~~~~~~~-~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      .+...+.+++|+|+... ..+|++++.||.|++||+.++
T Consensus       212 ~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          212 GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             CCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred             CCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence            34456999999987521 148999999999999999764

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=2.2e-23  Score=194.78  Aligned_cols=274  Identities=11%  Similarity=0.069  Sum_probs=204.7

Q ss_pred             cceEEeeEecCc--E-EEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEE-eCCCcEEEEECCCCeEE
Q 016224          110 TDILCRNWVQGN--C-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG-SKDETVRVWDCASGQCA  185 (393)
Q Consensus       110 ~~i~c~~~~~~~--~-~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~-s~dg~v~iwd~~~~~~~  185 (393)
                      ..+.+++|++++  + ++++.|+.|++||+.++ +.+..+..|. .|.+++|+|++++|+.+ +.|+.|++||+.+++.+
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~-~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~  109 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN-NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA  109 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT-EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCC-eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEE
Confidence            357999999875  3 45778999999999998 8888887665 99999999999988655 46799999999999999


Q ss_pred             EEEecCCceEEEE--eCCCEE-EEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EE-EEEeCCCcEEEEEecc
Q 016224          186 GVINLGGEVGCMI--SEGPWI-FIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGTQDGAILAWKFNV  258 (393)
Q Consensus       186 ~~~~~~~~~~~~~--~~~~~l-~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~~~~dg~I~vwd~~~  258 (393)
                      ..+..+..+..+.  ++++.+ +++ .++.|++||+.+++..........+..++|+++  .| ++++.++.|++||+++
T Consensus       110 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~  189 (391)
T 1l0q_A          110 GTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT  189 (391)
T ss_dssp             EEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             EEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            8888776665443  577766 455 578999999999888754444567799999988  44 6778899999999987


Q ss_pred             CCccccCceeecCceeeEEEEEEc--CCEEEEec---CCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEE-EEEe
Q 016224          259 TTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGS---MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFL-LSCS  330 (393)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l-~s~s  330 (393)
                      ..    ....+. +...+.+++++  +++|++++   .++.|++||+++++.+..+..|. .+.++.++  +++| ++++
T Consensus       190 ~~----~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~  263 (391)
T 1l0q_A          190 NS----VIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALS  263 (391)
T ss_dssp             TE----EEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEET
T ss_pred             Ce----EEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcC
Confidence            63    333333 44567777776  56787777   68999999999999998888765 46788888  5566 6778


Q ss_pred             CCCcEEEEEcCCCcceEEEEeecCCcc----EE---------EEEeeeCCCC-------CcEEEEEeCCCeEEEEeCCce
Q 016224          331 LDKTIKVWFATDSGNLEVTYTHNEEHG----VL---------ALCGMPDSEG-------KPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       331 ~dg~i~iwd~~~~~~~~~~~~~~~~~~----v~---------~~~~~~~~~~-------~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      .|+.|++||+.+++.+..+..+.....    +.         ...|..+...       ...|...+.|..+++|++.++
T Consensus       264 ~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g  343 (391)
T 1l0q_A          264 FXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDG  343 (391)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSS
T ss_pred             CCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCC
Confidence            899999999998877666654332210    00         0112222111       124666677899999999776


Q ss_pred             e
Q 016224          391 I  391 (393)
Q Consensus       391 ~  391 (393)
                      .
T Consensus       344 ~  344 (391)
T 1l0q_A          344 S  344 (391)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.94  E-value=5e-25  Score=209.04  Aligned_cols=215  Identities=20%  Similarity=0.276  Sum_probs=170.8

Q ss_pred             EEecCCcCCEEEEEecCC-CCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCce
Q 016224          144 TQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTD  222 (393)
Q Consensus       144 ~~l~~h~~~I~~i~~s~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~  222 (393)
                      .....|.+.|++++|+|+ +.+|++++.||.|++||+.+......                    .       +......
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--------------------~-------~~~~~~~  174 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--------------------P-------SGECQPD  174 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--------------------T-------TCCCCCS
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--------------------c-------cccCCCc
Confidence            455679999999999997 78999999999999999976311000                    0       0001112


Q ss_pred             eeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCcc---ccCceeecCceeeEEEEEEc---CCEEEEecCCC
Q 016224          223 LSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC---FEPAASLKGHSLAVVSLVVG---ANKLYSGSMDN  293 (393)
Q Consensus       223 ~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~---~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg  293 (393)
                      ..+..|...|.+++|+++   +|++++.||.|++||+......   ......+..|...|.+++|+   +.+|++++.|+
T Consensus       175 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg  254 (430)
T 2xyi_A          175 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ  254 (430)
T ss_dssp             EEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             EEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCC
Confidence            255688899999999986   8999999999999999874321   22345677899999999996   45899999999


Q ss_pred             cEEEeeCCCc---ceeeEeccCccceEEEEEc--CC-EEEEEeCCCcEEEEEcCCC-cceEEEEeecCCccEEEEEeeeC
Q 016224          294 SIRVWNLETL---QCIQTLTEHTSVVMSLLCW--DQ-FLLSCSLDKTIKVWFATDS-GNLEVTYTHNEEHGVLALCGMPD  366 (393)
Q Consensus       294 ~i~iwd~~~~---~~~~~~~~~~~~v~~l~~~--~~-~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~  366 (393)
                      .|++||++++   +.+..+..|...|.+++|+  +. +|++++.||.|++||+++. ..+..+..|.  ..+.++.|+|+
T Consensus       255 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~--~~v~~i~~sp~  332 (430)
T 2xyi_A          255 KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK--DEIFQVQWSPH  332 (430)
T ss_dssp             EEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCS--SCEEEEEECSS
T ss_pred             eEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCC--CCEEEEEECCC
Confidence            9999999987   6788888999999999998  33 7999999999999999874 4455555554  45999999987


Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCc
Q 016224          367 SEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       367 ~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      +.  .+|++++.|+.|+|||+..
T Consensus       333 ~~--~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          333 NE--TILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             CT--TEEEEEETTSCCEEEEGGG
T ss_pred             CC--CEEEEEeCCCcEEEEeCCC
Confidence            53  3899999999999999976

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=8.7e-27  Score=221.56  Aligned_cols=222  Identities=11%  Similarity=0.037  Sum_probs=174.2

Q ss_pred             ceeecceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEE
Q 016224          106 AVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA  185 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  185 (393)
                      ..|...|.+++|+|++     .++.+.+|+.+..  .+..+ .|...|.+++|+|+|++||+++.||+|+|||.+.  ++
T Consensus        49 ~gh~~~v~~V~FsPdg-----~~~~~~~~~~~~~--~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l  118 (588)
T 2j04_A           49 NCNSKNLFHVKEFPLE-----FENKLDFELAQQN--GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--ML  118 (588)
T ss_dssp             SSBGGGTEEEEEECCC-----CCCTTTTSCCCSS--CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EE
T ss_pred             cCCCccEEEEEECCCC-----CcceEEEEeCCCc--eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--ee
Confidence            3588899999999987     4556555554322  12222 5689999999999999999999999999999644  55


Q ss_pred             EEEecCC------ceEE--EEeCCCEEEEE-cCCeEEEEECCCCce--------eee----cCCCCcEEEEEEeCCEEEE
Q 016224          186 GVINLGG------EVGC--MISEGPWIFIG-VTNFVKAWNTQTNTD--------LSL----SGPVGQVYAMAVGNDLLFA  244 (393)
Q Consensus       186 ~~~~~~~------~~~~--~~~~~~~l~~~-~~~~i~v~d~~~~~~--------~~~----~~~~~~v~~l~~~~~~l~~  244 (393)
                      ..+. +.      .+.+  +.+++++|+++ .|++|++||+.++..        ..+    .+|...|.+++|+|+-+++
T Consensus       119 ~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaa  197 (588)
T 2j04_A          119 TNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVA  197 (588)
T ss_dssp             EECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEE
T ss_pred             eecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCcEEE
Confidence            5555 33      2444  44799999886 789999999999853        243    6788899999999998889


Q ss_pred             EeCCCcEEEEEeccCCccccCceee-cCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEE--
Q 016224          245 GTQDGAILAWKFNVTTNCFEPAASL-KGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC--  321 (393)
Q Consensus       245 ~~~dg~I~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~--  321 (393)
                      ++.|++|++||+...... +....+ .+|...|.+++|.++.|++++ +++|++||+.+++......+|...+..+.+  
T Consensus       198 ss~D~tVrlWd~~~~~~~-~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~  275 (588)
T 2j04_A          198 ALSNNSVFSMTVSASSHQ-PVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNH  275 (588)
T ss_dssp             EETTCCEEEECCCSSSSC-CCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETT
T ss_pred             EeCCCeEEEEECCCCccc-cceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeee
Confidence            999999999999876421 122345 478889999999878899887 699999999988774444489999999999  


Q ss_pred             c--CCEEEEEeCCCcEEEEEcC
Q 016224          322 W--DQFLLSCSLDKTIKVWFAT  341 (393)
Q Consensus       322 ~--~~~l~s~s~dg~i~iwd~~  341 (393)
                      +  +..|++++.||+ ++|...
T Consensus       276 s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          276 EKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             CSSCEEEEECSSCEE-EEEESS
T ss_pred             CCCCCEEEEEcCCCC-EEEeec
Confidence            6  457999999999 999874

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=1.2e-24  Score=194.91  Aligned_cols=192  Identities=13%  Similarity=0.074  Sum_probs=137.6

Q ss_pred             ecCcEEEec---CCCeEEEEECC-CCcEEEEEecCCcCCEEEEEecC---CCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 016224          118 VQGNCMYGE---KCKFLHSWTVG-DGFKLLTQLEGHQKVVSGITLPS---GSDKLYSGSKDETVRVWDCASGQCAGVINL  190 (393)
Q Consensus       118 ~~~~~~~g~---~dg~i~vwd~~-~~~~~~~~l~~h~~~I~~i~~s~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~  190 (393)
                      ..+.++..+   .|+.|++|++. ++ +.+..+.+|...++.++|++   ++++|++++.|++|+|||+.++++++++..
T Consensus       143 ~~g~lv~ss~~g~d~~V~~~~~s~dG-~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g  221 (356)
T 2w18_A          143 TKRRLVSSSGTLSDQQVEVMTFAEDG-GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHI  221 (356)
T ss_dssp             TTTEEEEEESSSTTCEEEEEEECTTS-CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCcEEEecccCCCCcEEEEEECCCC-ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcC
Confidence            344455443   49999999994 46 78888888999999999988   779999999999999999999999988863


Q ss_pred             CCc----e--EEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCcccc
Q 016224          191 GGE----V--GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFE  264 (393)
Q Consensus       191 ~~~----~--~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~  264 (393)
                      +..    +  ..+.+++.+++++.... .+|                         .+++|+.|++|++||..++..   
T Consensus       222 ~~~~v~~v~~vafSpdG~~lvs~s~~~-~~w-------------------------~laSGs~D~tIklWd~~tgk~---  272 (356)
T 2w18_A          222 DDSYQASVCHKAYSEMGLLFIVLSHPC-AKE-------------------------SESLRSPVFQLIVINPKTTLS---  272 (356)
T ss_dssp             CC---CCCEEEEEEETTEEEEEEC--------------------------------------CCEEEEEEETTTTEE---
T ss_pred             CCcceeeeEEEEECCCCCEEEEeccCC-Ccc-------------------------eeeccCCCcEEEEEECCCCEE---
Confidence            321    1  11223333332221100 000                         357889999999999987632   


Q ss_pred             Cceee-----cCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceE-EEEEc--CCEEEEEeCCCcEE
Q 016224          265 PAASL-----KGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVM-SLLCW--DQFLLSCSLDKTIK  336 (393)
Q Consensus       265 ~~~~~-----~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~l~~~--~~~l~s~s~dg~i~  336 (393)
                       +..+     .+|...+.+..+++.++++++.|++|+|||+.+++++.++.+|...+. +++|+  +++|++|+.|++|+
T Consensus       273 -l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIk  351 (356)
T 2w18_A          273 -VGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIF  351 (356)
T ss_dssp             -EEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEE
T ss_pred             -EEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEE
Confidence             2222     466666666777788999999999999999999999999999987655 58888  67999999999999


Q ss_pred             EEEc
Q 016224          337 VWFA  340 (393)
Q Consensus       337 iwd~  340 (393)
                      |||+
T Consensus       352 lWd~  355 (356)
T 2w18_A          352 VYHY  355 (356)
T ss_dssp             EEEE
T ss_pred             EecC
Confidence            9986

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.6e-24  Score=218.18  Aligned_cols=211  Identities=17%  Similarity=0.193  Sum_probs=167.0

Q ss_pred             EEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCce
Q 016224          143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTD  222 (393)
Q Consensus       143 ~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~  222 (393)
                      +..+.+|.+.|++++|+|++++|++|+.||+|+|||+.++.....                                   
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~-----------------------------------   46 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI-----------------------------------   46 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEE-----------------------------------
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccc-----------------------------------
Confidence            356789999999999999999999999999999999874432111                                   


Q ss_pred             eeecCCCCcEEEEEEeC----CEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc----CCEEEEecCCCc
Q 016224          223 LSLSGPVGQVYAMAVGN----DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG----ANKLYSGSMDNS  294 (393)
Q Consensus       223 ~~~~~~~~~v~~l~~~~----~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~----~~~l~sg~~dg~  294 (393)
                      ..+.+|...|.+++|++    ++|++++.||.|++||+..+..  .....+..|...|.+++++    ++++++++.||.
T Consensus        47 ~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~  124 (753)
T 3jro_A           47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW--SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK  124 (753)
T ss_dssp             EEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE--EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred             eeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc--cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCc
Confidence            13467899999999974    3999999999999999988631  3566778899999999996    568999999999


Q ss_pred             EEEeeCCCc--ceeeEeccCccceEEEEEcC---------------CEEEEEeCCCcEEEEEcCCCcceEEEE--eecCC
Q 016224          295 IRVWNLETL--QCIQTLTEHTSVVMSLLCWD---------------QFLLSCSLDKTIKVWFATDSGNLEVTY--THNEE  355 (393)
Q Consensus       295 i~iwd~~~~--~~~~~~~~~~~~v~~l~~~~---------------~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~  355 (393)
                      |++||++++  .....+..|...|.++.|++               .+|++++.||.|++||+++........  ...+.
T Consensus       125 I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~  204 (753)
T 3jro_A          125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS  204 (753)
T ss_dssp             EEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred             EEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCC
Confidence            999999887  34556778999999999974               589999999999999998765432211  12234


Q ss_pred             ccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          356 HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       356 ~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      ..+.+++|+|+...+.+|++++.||.|++||+.++
T Consensus       205 ~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          205 DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence            56999999988322449999999999999999875

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.92  E-value=5e-24  Score=199.78  Aligned_cols=196  Identities=14%  Similarity=0.115  Sum_probs=134.5

Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEe
Q 016224          159 PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVG  238 (393)
Q Consensus       159 s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~  238 (393)
                      ++++.+|++++.|++|+|||+++++.......                                ..+.+|...|.+++|+
T Consensus        98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~--------------------------------~~~~gH~~~v~~v~~~  145 (393)
T 4gq1_A           98 PVYSLFLACVCQDNTVRLIITKNETIITQHVL--------------------------------GGKSGHHNFVNDIDIA  145 (393)
T ss_dssp             CEEEEEEEEEETTSCEEEEEEETTEEEEEEEE--------------------------------CTTTSCSSCEEEEEEE
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCccceeeee--------------------------------cccCCCCCceEEEEEc
Confidence            34455777888888888888777655432210                                1357899999999998


Q ss_pred             C--------C--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC---CEEEEecCCCcEEEeeCCCcce
Q 016224          239 N--------D--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQC  305 (393)
Q Consensus       239 ~--------~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~dg~i~iwd~~~~~~  305 (393)
                      |        +  +|++++.|++|++||++..    .....+..|...+.+++|++   ++|++++.|++|++||+++++.
T Consensus       146 p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~----~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~  221 (393)
T 4gq1_A          146 DVYSADNRLAEQVIASVGDDCTLIIWRLTDE----GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLS  221 (393)
T ss_dssp             EEECTTCSEEEEEEEEEETTSEEEEEEEETT----EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-
T ss_pred             cccccccCCCCCEEEEEECCCeEEEEECCCC----ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcc
Confidence            6        3  8999999999999999876    44556667888999999975   3799999999999999988765


Q ss_pred             eeEe-------------------------ccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCC--
Q 016224          306 IQTL-------------------------TEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE--  355 (393)
Q Consensus       306 ~~~~-------------------------~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--  355 (393)
                      ....                         .+|...+.++.|+   ++.|++++.|+++++||+........+..+...  
T Consensus       222 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~  301 (393)
T 4gq1_A          222 AEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLG  301 (393)
T ss_dssp             ---------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------
T ss_pred             cccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccc
Confidence            4322                         3566778888886   679999999999999999876554444332221  


Q ss_pred             --------------ccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          356 --------------HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       356 --------------~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                                    .......+.+. .++.++++|+.||.|++||+.+++
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sgs~Dg~V~lwd~~~~~  350 (393)
T 4gq1_A          302 PKNLLPNVQGISLFPSLLGACPHPR-YMDYFATAHSQHGLIQLINTYEKD  350 (393)
T ss_dssp             --CCSCSEEEECSSCCSSCCEECSS-CTTEEEEEETTTTEEEEEETTCTT
T ss_pred             cEEEccccccccccCcceeEEEccC-CCCEEEEEECCCCEEEEEECCCCc
Confidence                          11112233332 244577888999999999998764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.91  E-value=6.3e-22  Score=187.37  Aligned_cols=229  Identities=12%  Similarity=0.089  Sum_probs=185.2

Q ss_pred             eeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEE-eCCCcEEEEECCCCe
Q 016224          107 VIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG-SKDETVRVWDCASGQ  183 (393)
Q Consensus       107 ~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~-s~dg~v~iwd~~~~~  183 (393)
                      .|...+.+++|++++  +++++.|+.|++||+.++ +.+..+..|...+.+++|+|++++|+++ +.|+.|++||+.+++
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~  245 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL-AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL  245 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC-CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc-eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence            456689999998764  446888999999999988 7888888999999999999999988655 479999999999999


Q ss_pred             EEEEEecCCceEEEE--eCCCEEEEEc---------CCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCC
Q 016224          184 CAGVINLGGEVGCMI--SEGPWIFIGV---------TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDG  249 (393)
Q Consensus       184 ~~~~~~~~~~~~~~~--~~~~~l~~~~---------~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg  249 (393)
                      .+..+.....+..+.  ++++.++++.         ++.|++||+.+++......+...+..++|+++   ++++++.++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  325 (433)
T 3bws_A          246 EIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCS  325 (433)
T ss_dssp             EEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTT
T ss_pred             EEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCC
Confidence            988887766655443  5777777653         67999999999988866677778999999987   567778999


Q ss_pred             cEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecC---------------CCcEEEeeCCCcceeeEeccC
Q 016224          250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSM---------------DNSIRVWNLETLQCIQTLTEH  312 (393)
Q Consensus       250 ~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~---------------dg~i~iwd~~~~~~~~~~~~~  312 (393)
                      .|++||+.+.    +....+. +...+.+++++  ++++++++.               ||.|++||+.+++.+..+.. 
T Consensus       326 ~v~v~d~~~~----~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-  399 (433)
T 3bws_A          326 KIEVYDLKEK----KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-  399 (433)
T ss_dssp             EEEEEETTTT----EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-
T ss_pred             EEEEEECCCC----cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-
Confidence            9999999865    3333333 55667788886  557777765               57999999999999988876 


Q ss_pred             ccceEEEEEc--CCEEEEEeC-CCcEEEEEcCC
Q 016224          313 TSVVMSLLCW--DQFLLSCSL-DKTIKVWFATD  342 (393)
Q Consensus       313 ~~~v~~l~~~--~~~l~s~s~-dg~i~iwd~~~  342 (393)
                      ...+.+++|+  +++|++++. |+.|++|++..
T Consensus       400 ~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          400 GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            4578899997  668887765 99999999853

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=7.7e-22  Score=192.12  Aligned_cols=266  Identities=13%  Similarity=0.084  Sum_probs=198.0

Q ss_pred             eEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEEC--CCCeEEEEEecC
Q 016224          116 NWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC--ASGQCAGVINLG  191 (393)
Q Consensus       116 ~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~--~~~~~~~~~~~~  191 (393)
                      .+++++  +++++.|++|.+||..++ +++.++..+.. +..++|+|++++|++++.|++|.+||+  .+++++.++...
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~-~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g  221 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSK-KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG  221 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTC-CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCc-eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC
Confidence            355554  346888999999999998 88888884433 899999999999999999999999999  899999988876


Q ss_pred             CceEE--EEe----CCCEEEEE--cCCeEEEEECCCCceee-ecC----------C-CCcEEEEEEeCC---EEEEEeCC
Q 016224          192 GEVGC--MIS----EGPWIFIG--VTNFVKAWNTQTNTDLS-LSG----------P-VGQVYAMAVGND---LLFAGTQD  248 (393)
Q Consensus       192 ~~~~~--~~~----~~~~l~~~--~~~~i~v~d~~~~~~~~-~~~----------~-~~~v~~l~~~~~---~l~~~~~d  248 (393)
                      .....  +.+    ++++++++  .+++|.+||..+.+.+. +..          | ...+..+.++++   ++++...+
T Consensus       222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~  301 (543)
T 1nir_A          222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  301 (543)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence            55544  335    78988876  47899999999988762 222          1 237899999986   77888899


Q ss_pred             CcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEE-EecCCCcEEEeeCCCcceeeEecc----CccceEEEEE
Q 016224          249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLY-SGSMDNSIRVWNLETLQCIQTLTE----HTSVVMSLLC  321 (393)
Q Consensus       249 g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~l~~  321 (393)
                      +.|.+||+...... . ...+ .+...+..+.|+  +++|+ ++..+++|.+||+.+++++.++..    |......+..
T Consensus       302 g~i~vvd~~~~~~l-~-~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~  378 (543)
T 1nir_A          302 GKVLLVNYKDIDNL-T-VTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVH  378 (543)
T ss_dssp             TEEEEEECTTSSSC-E-EEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEE
T ss_pred             CeEEEEEecCCCcc-e-eEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCC
Confidence            99999999875321 1 1122 233344555665  66655 555689999999999999988874    5544444432


Q ss_pred             c--CCEEEEEe-CCCcEEEEEcCC-------CcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe-------CCCeEEE
Q 016224          322 W--DQFLLSCS-LDKTIKVWFATD-------SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-------NDNSVRF  384 (393)
Q Consensus       322 ~--~~~l~s~s-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s-------~dg~I~i  384 (393)
                      .  +..++++. .|++|.+||+.+       .+.+..+..+..  .+..+.++|+++   +|++++       .+++|.+
T Consensus       379 p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~--~~~~v~~~pdg~---~l~v~~~~~~~~~~~~~v~v  453 (543)
T 1nir_A          379 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--GSLFIKTHPKSS---HLYVDTTFNPDARISQSVAV  453 (543)
T ss_dssp             TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEECCTTCC---EEEECCTTCSSHHHHTCEEE
T ss_pred             CCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC--CceEEEcCCCCC---cEEEecCCCCCcccCceEEE
Confidence            2  34566665 589999999987       566666665543  367788888766   888887       2789999


Q ss_pred             EeCCcee
Q 016224          385 YDLPSVI  391 (393)
Q Consensus       385 wd~~s~~  391 (393)
                      ||+.+++
T Consensus       454 ~d~~~~~  460 (543)
T 1nir_A          454 FDLKNLD  460 (543)
T ss_dssp             EETTCTT
T ss_pred             EECCCCC
Confidence            9999875

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=1.8e-21  Score=189.48  Aligned_cols=273  Identities=9%  Similarity=0.049  Sum_probs=203.3

Q ss_pred             ceEEeeEecCc--EEEecCCCeEEEEEC--CCCcEEEEEecCCcCCEEEEEecC----CCCEEEEEeC-CCcEEEEECCC
Q 016224          111 DILCRNWVQGN--CMYGEKCKFLHSWTV--GDGFKLLTQLEGHQKVVSGITLPS----GSDKLYSGSK-DETVRVWDCAS  181 (393)
Q Consensus       111 ~i~c~~~~~~~--~~~g~~dg~i~vwd~--~~~~~~~~~l~~h~~~I~~i~~s~----~~~~l~s~s~-dg~v~iwd~~~  181 (393)
                      .+.++.|++++  +++++.|+.|++||+  .++ +.+.++. +...+..++|+|    ++++|++++. +++|.|||..+
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~-~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t  257 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEP-TKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET  257 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-EEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCC-cEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc
Confidence            36788899874  557888999999999  777 7888888 456789999999    9999999884 89999999999


Q ss_pred             CeEEEEEecCC------------ceEEE--EeCCCEEEEE--cCCeEEEEECCCCceee--ecCCCCcEEEEEEeCC--E
Q 016224          182 GQCAGVINLGG------------EVGCM--ISEGPWIFIG--VTNFVKAWNTQTNTDLS--LSGPVGQVYAMAVGND--L  241 (393)
Q Consensus       182 ~~~~~~~~~~~------------~~~~~--~~~~~~l~~~--~~~~i~v~d~~~~~~~~--~~~~~~~v~~l~~~~~--~  241 (393)
                      ++++..+....            .+..+  .+++..++++  .++.|.+||..+.+.+.  ...+...+..+.|+|+  +
T Consensus       258 ~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~  337 (543)
T 1nir_A          258 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRY  337 (543)
T ss_dssp             CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCE
T ss_pred             cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCE
Confidence            99998887521            23333  2445555544  67899999998865432  3345667888999998  4


Q ss_pred             EE-EEeCCCcEEEEEeccCCccccCceeecC----ceeeEEEEE-Ec-CCEEEEec-CCCcEEEeeCCC-------ccee
Q 016224          242 LF-AGTQDGAILAWKFNVTTNCFEPAASLKG----HSLAVVSLV-VG-ANKLYSGS-MDNSIRVWNLET-------LQCI  306 (393)
Q Consensus       242 l~-~~~~dg~I~vwd~~~~~~~~~~~~~~~~----~~~~v~~l~-~~-~~~l~sg~-~dg~i~iwd~~~-------~~~~  306 (393)
                      |+ ++..+++|.+||+.++.    +...+..    |......+. .+ +..++++. .|++|.+||+.+       ++++
T Consensus       338 l~va~~~~~~v~v~D~~tg~----l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v  413 (543)
T 1nir_A          338 FMTAANNSNKVAVIDSKDRR----LSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV  413 (543)
T ss_dssp             EEEEEGGGTEEEEEETTTTE----EEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE
T ss_pred             EEEEecCCCeEEEEECCCCe----EEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEE
Confidence            54 45568999999998873    3333332    543333332 23 33566665 689999999998       8999


Q ss_pred             eEeccCccceEEEEEc--CCEEEEEe-------CCCcEEEEEcCCCcce-EEEEe------ecCCccEEEEEeeeCCCCC
Q 016224          307 QTLTEHTSVVMSLLCW--DQFLLSCS-------LDKTIKVWFATDSGNL-EVTYT------HNEEHGVLALCGMPDSEGK  370 (393)
Q Consensus       307 ~~~~~~~~~v~~l~~~--~~~l~s~s-------~dg~i~iwd~~~~~~~-~~~~~------~~~~~~v~~~~~~~~~~~~  370 (393)
                      +++..|...+..+.++  +++|++++       .+++|.+||+.+.+.. ..+..      ......+..+.|+|++.  
T Consensus       414 ~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~--  491 (543)
T 1nir_A          414 AELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGD--  491 (543)
T ss_dssp             EEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSS--
T ss_pred             EEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCC--
Confidence            9999998888888887  67899887       2779999999988876 33311      12245688999988866  


Q ss_pred             cEEEEEe-----CCCeEEEEeCCceee
Q 016224          371 PVLLCSC-----NDNSVRFYDLPSVII  392 (393)
Q Consensus       371 ~~l~s~s-----~dg~I~iwd~~s~~l  392 (393)
                       .|+.+.     .|+.|.|||..++++
T Consensus       492 -~~~~s~~~~~~~~~~i~v~D~~t~~~  517 (543)
T 1nir_A          492 -EVWFSVWNGKNDSSALVVVDDKTLKL  517 (543)
T ss_dssp             -EEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             -EEEEEeecCCCCCCeEEEEECCCceE
Confidence             666552     479999999999876

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.89  E-value=3.1e-20  Score=169.23  Aligned_cols=264  Identities=8%  Similarity=0.061  Sum_probs=183.9

Q ss_pred             EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC-CCcEEEEECCCCeE-EEEEecCCce---EE
Q 016224          122 CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCASGQC-AGVINLGGEV---GC  196 (393)
Q Consensus       122 ~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~-dg~v~iwd~~~~~~-~~~~~~~~~~---~~  196 (393)
                      +++...++.|.+||..++ +.+..+..+...+ .++|+|++++|++++. ++.|.+||+.+++. ...+......   ..
T Consensus        13 ~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~   90 (331)
T 3u4y_A           13 IVVEQHLRRISFFSTDTL-EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVD   90 (331)
T ss_dssp             EEEEGGGTEEEEEETTTC-CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEE
T ss_pred             EEEecCCCeEEEEeCccc-ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceE
Confidence            446788999999999988 7777777777777 9999999997777666 89999999999887 6666554332   34


Q ss_pred             EEeCCCEEEEEcCC----eEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCc-EEEEEeccCCccccCcee
Q 016224          197 MISEGPWIFIGVTN----FVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGA-ILAWKFNVTTNCFEPAAS  268 (393)
Q Consensus       197 ~~~~~~~l~~~~~~----~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~-I~vwd~~~~~~~~~~~~~  268 (393)
                      +.+++++++++.++    .|.+||+.+++.+...........++|+|+   ++++...++. |.+|++............
T Consensus        91 ~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~  170 (331)
T 3u4y_A           91 ITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE  170 (331)
T ss_dssp             ECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred             ECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc
Confidence            55788888876444    899999999988755555667799999998   4555566688 999998754321111011


Q ss_pred             ecCceeeEEEEEEc--CCEE-EEecCCCcEEEeeCCCcce---eeEeccCccceEEEEEc--CCEEEEE-eCCCcEEEEE
Q 016224          269 LKGHSLAVVSLVVG--ANKL-YSGSMDNSIRVWNLETLQC---IQTLTEHTSVVMSLLCW--DQFLLSC-SLDKTIKVWF  339 (393)
Q Consensus       269 ~~~~~~~v~~l~~~--~~~l-~sg~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~l~~~--~~~l~s~-s~dg~i~iwd  339 (393)
                      ..........++++  ++++ +++..++.|++||+.+++.   +..+..+ ..+..++++  +++|+++ ..++.|.+||
T Consensus       171 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d  249 (331)
T 3u4y_A          171 FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFN  249 (331)
T ss_dssp             EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEE
T ss_pred             cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEE
Confidence            11223345666665  5554 5555789999999999888   7777644 456678887  6666555 4578899999


Q ss_pred             cCCCcc--eEEEEee----cC-CccEEEEEeeeCCCCCcEEE-EEeCCCeEEEEeCCcee
Q 016224          340 ATDSGN--LEVTYTH----NE-EHGVLALCGMPDSEGKPVLL-CSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       340 ~~~~~~--~~~~~~~----~~-~~~v~~~~~~~~~~~~~~l~-s~s~dg~I~iwd~~s~~  391 (393)
                      +.+++.  +..+...    .. ......++|+|++.   +|+ ++..++.|.+||+.+..
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~---~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          250 QLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTET---KLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             TTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSS---EEEEEETTTTEEEEEETTSCE
T ss_pred             CCCCceeeecccccccccCCCCcccccceEECCCCC---EEEEecCCCCcEEEEEecCCc
Confidence            987654  2222221    11 11123467877654   565 45557799999998754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.87  E-value=3.1e-20  Score=175.18  Aligned_cols=267  Identities=10%  Similarity=-0.007  Sum_probs=193.0

Q ss_pred             ceEEeeEecCc---EEEec----CCC----eEEEEEC--CCCcEEE--EEecCCcCCEEEEEecC--------------C
Q 016224          111 DILCRNWVQGN---CMYGE----KCK----FLHSWTV--GDGFKLL--TQLEGHQKVVSGITLPS--------------G  161 (393)
Q Consensus       111 ~i~c~~~~~~~---~~~g~----~dg----~i~vwd~--~~~~~~~--~~l~~h~~~I~~i~~s~--------------~  161 (393)
                      .+....|...+   +++|+    .+|    .|++||+  .++ +.+  ..+.+|...+..+++++              .
T Consensus        64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPG-TVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTT-CEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCC-CEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            45556665432   33443    567    8999999  888 555  56889998888887764              1


Q ss_pred             CCEEEEEeCC------CcEEEEECCCCeEEEEEecCCceEE--EEeCCCEEEEE-cCC---eEEEEECCCCceeeecCCC
Q 016224          162 SDKLYSGSKD------ETVRVWDCASGQCAGVINLGGEVGC--MISEGPWIFIG-VTN---FVKAWNTQTNTDLSLSGPV  229 (393)
Q Consensus       162 ~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~-~~~---~i~v~d~~~~~~~~~~~~~  229 (393)
                      +..|+.++.+      +.|++||+..+.......+...+..  +.++++.|+.+ .++   .|++||+.+++...+..+.
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~  222 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP  222 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCC
Confidence            5667666654      7999999986544333344444443  44688877765 443   9999999999988888888


Q ss_pred             CcEEEEEEeCC--EEE-EEeCCCc--EEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecC-CC--cEEEee
Q 016224          230 GQVYAMAVGND--LLF-AGTQDGA--ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSM-DN--SIRVWN  299 (393)
Q Consensus       230 ~~v~~l~~~~~--~l~-~~~~dg~--I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~-dg--~i~iwd  299 (393)
                      ..+.+++|+|+  .|+ +++.++.  |++||+.++.     ...+..|...+.+++|+  +++|++++. ++  .|.+||
T Consensus       223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-----~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d  297 (415)
T 2hqs_A          223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-----IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN  297 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-----EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-----EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence            99999999998  555 6666665  9999988753     24556677788888886  567777775 44  688889


Q ss_pred             CCCcceeeEeccCccceEEEEEc--CCEEEEEeCC---CcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEE
Q 016224          300 LETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD---KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLL  374 (393)
Q Consensus       300 ~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  374 (393)
                      +.+++. ..+..+...+.++.|+  +++|++++.+   ..|++||+.+++. ..+..+   ..+..++|+|++.   +|+
T Consensus       298 ~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~---~~~~~~~~spdg~---~l~  369 (415)
T 2hqs_A          298 INGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSST---FLDETPSLAPNGT---MVI  369 (415)
T ss_dssp             TTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCS---SSCEEEEECTTSS---EEE
T ss_pred             CCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCC---CCcCCeEEcCCCC---EEE
Confidence            988764 4556677788889998  6788887764   5899999987654 333332   2588899988765   888


Q ss_pred             EEeCCC---eEEEEeCCcee
Q 016224          375 CSCNDN---SVRFYDLPSVI  391 (393)
Q Consensus       375 s~s~dg---~I~iwd~~s~~  391 (393)
                      +++.++   .|++||+....
T Consensus       370 ~~s~~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          370 YSSSQGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             EEEEETTEEEEEEEETTSCC
T ss_pred             EEEcCCCccEEEEEECCCCc
Confidence            888776   89999987653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=3e-20  Score=169.27  Aligned_cols=256  Identities=11%  Similarity=0.034  Sum_probs=182.1

Q ss_pred             cEEEecCCCeEEEEECCCCcEEEEEecCCc-C-CEEEEEecCCCCEEE-EEeCCCcEEEEECCCCeEEEEEecCC-----
Q 016224          121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-K-VVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGVINLGG-----  192 (393)
Q Consensus       121 ~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~-~-~I~~i~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~-----  192 (393)
                      .+++++.++.|++||+.++ +.+..+.... . .+..++|+|++++|+ ++..++.|.+||+.+++.+..+....     
T Consensus         3 ~~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKM-AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEETTTEEEEEETTTT-EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             EEEEcCCCCeEEEEECCCC-cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            3567889999999999998 7777776332 2 478899999998765 55567899999999999888777532     


Q ss_pred             ---ceEEEEeCCCEEEEE-------------cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEE
Q 016224          193 ---EVGCMISEGPWIFIG-------------VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAW  254 (393)
Q Consensus       193 ---~~~~~~~~~~~l~~~-------------~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vw  254 (393)
                         ....+.++++.++++             .++.|.+||+.+++..........+..++|+|+  +|+++  ++.|.+|
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~  159 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVM  159 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEE
Confidence               224455688888776             368999999998887644444556788899988  56666  6899999


Q ss_pred             EeccCCccccCceeecCce--eeEEEEEEcCCEEEEecC-CC-----------------------cEEEeeCCCccee-e
Q 016224          255 KFNVTTNCFEPAASLKGHS--LAVVSLVVGANKLYSGSM-DN-----------------------SIRVWNLETLQCI-Q  307 (393)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~--~~v~~l~~~~~~l~sg~~-dg-----------------------~i~iwd~~~~~~~-~  307 (393)
                      |+.++.    ....+..+.  ..+ .+..++..++..+. ++                       .|.+||+.+++.. .
T Consensus       160 d~~~~~----~~~~~~~~~~~~~~-~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  234 (337)
T 1pby_B          160 DPEAGT----LVEDKPIQSWEAET-YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR  234 (337)
T ss_dssp             ETTTTE----EEEEECSTTTTTTT-BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred             ECCCCc----EeeeeeccccCCCc-eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEe
Confidence            998763    222222211  111 33444544433332 22                       4789999998764 2


Q ss_pred             EeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEE
Q 016224          308 TLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFY  385 (393)
Q Consensus       308 ~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iw  385 (393)
                      .+..+...+..+.++  +++++++  ++.|.+||+.+++.+..+...   ..+..++|+|++.   +|++++.++.|++|
T Consensus       235 ~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~---~l~~~~~~~~i~v~  306 (337)
T 1pby_B          235 EVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP---HSYYSVNVSTDGS---TVWLGGALGDLAAY  306 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS---SCCCEEEECTTSC---EEEEESBSSEEEEE
T ss_pred             ecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC---CceeeEEECCCCC---EEEEEcCCCcEEEE
Confidence            234455667788888  5678777  799999999877665554432   3466788887655   78888899999999


Q ss_pred             eCCceee
Q 016224          386 DLPSVII  392 (393)
Q Consensus       386 d~~s~~l  392 (393)
                      |+.++++
T Consensus       307 d~~~~~~  313 (337)
T 1pby_B          307 DAETLEK  313 (337)
T ss_dssp             ETTTCCE
T ss_pred             ECcCCcE
Confidence            9998764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.87  E-value=5e-20  Score=164.18  Aligned_cols=246  Identities=9%  Similarity=0.013  Sum_probs=178.7

Q ss_pred             ecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC-CeEEEEEecC--Cce--EEEEe
Q 016224          125 GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-GQCAGVINLG--GEV--GCMIS  199 (393)
Q Consensus       125 g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~--~~~--~~~~~  199 (393)
                      ++.++.|++||+.++ +.. .+..|...|.+++|+|++++|++++ ++.|.+||+.+ ++........  ..+  ..+.+
T Consensus        18 ~~~~~~i~~~d~~~~-~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp   94 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTR-KMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP   94 (297)
T ss_dssp             CCCCEEEEEEETTTT-EEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred             CCcceeEEEEeCCCC-cee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence            567899999999987 544 4556899999999999999999987 78999999999 7766555443  222  45567


Q ss_pred             CCCEEEEEc-----CCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EE-EEEeCCCcEEEEEeccCCccccCceeecC
Q 016224          200 EGPWIFIGV-----TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGTQDGAILAWKFNVTTNCFEPAASLKG  271 (393)
Q Consensus       200 ~~~~l~~~~-----~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~~~~dg~I~vwd~~~~~~~~~~~~~~~~  271 (393)
                      ++++++++.     ...|..++..++....+..+. .+..++|+|+  .| +++..++.+.+|++....   .....+..
T Consensus        95 dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~---~~~~~~~~  170 (297)
T 2ojh_A           95 DGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS---GVETRLTH  170 (297)
T ss_dssp             TSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTT---CCEEECCC
T ss_pred             CCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCC---CcceEccc
Confidence            888888764     236666666666654444443 4889999988  44 478889999999986543   22344556


Q ss_pred             ceeeEEEEEEc--CCEEEEec-CCCcEEEeeCC-CcceeeEeccCccceEEEEEc--CCEEEEEeCC-----------Cc
Q 016224          272 HSLAVVSLVVG--ANKLYSGS-MDNSIRVWNLE-TLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD-----------KT  334 (393)
Q Consensus       272 ~~~~v~~l~~~--~~~l~sg~-~dg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d-----------g~  334 (393)
                      +...+.++.|+  +++|+.++ .++.+++|++. .+..+..+..|...+..+.|+  +++|++++.+           +.
T Consensus       171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~  250 (297)
T 2ojh_A          171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR  250 (297)
T ss_dssp             SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred             CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence            67778888886  55666555 58999999986 566678888888889999998  6788877765           56


Q ss_pred             EEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCC
Q 016224          335 IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN  380 (393)
Q Consensus       335 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg  380 (393)
                      |.+||+.+++.........+...+..+.|+|++.   +|++++.|.
T Consensus       251 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~---~l~~~~~~~  293 (297)
T 2ojh_A          251 VQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGD---EFAYVRYFP  293 (297)
T ss_dssp             EEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSS---EEEEEEECC
T ss_pred             EEEEecCCCCceeeeccCCCCcccccceECCCCC---EEEEEEecc
Confidence            9999998766544333223334577788887765   777766553

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.86  E-value=3.5e-19  Score=162.58  Aligned_cols=262  Identities=15%  Similarity=0.216  Sum_probs=171.0

Q ss_pred             EecCCCeEEEEECC-CC-cEEEEEecCCcCCEEEEEecCCCCEEEEEeCC-CcEEEEECC--CCe--EEEEEecCCce--
Q 016224          124 YGEKCKFLHSWTVG-DG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD-ETVRVWDCA--SGQ--CAGVINLGGEV--  194 (393)
Q Consensus       124 ~g~~dg~i~vwd~~-~~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d-g~v~iwd~~--~~~--~~~~~~~~~~~--  194 (393)
                      +++.++.|++|++. ++ .+.+..+ .|...+.+++|+|++++|++++.+ +.|.+|++.  +++  .+..+.....+  
T Consensus        10 ~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (343)
T 1ri6_A           10 ASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTH   88 (343)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSE
T ss_pred             eCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcE
Confidence            34779999999985 33 2334444 477889999999999999999887 999999997  554  34444433333  


Q ss_pred             EEEEeCCCEEEEE--cCCeEEEEECC---CCceeeecCCCCcEEEEEEeCC--EEEEEe-CCCcEEEEEecc-CCccccC
Q 016224          195 GCMISEGPWIFIG--VTNFVKAWNTQ---TNTDLSLSGPVGQVYAMAVGND--LLFAGT-QDGAILAWKFNV-TTNCFEP  265 (393)
Q Consensus       195 ~~~~~~~~~l~~~--~~~~i~v~d~~---~~~~~~~~~~~~~v~~l~~~~~--~l~~~~-~dg~I~vwd~~~-~~~~~~~  265 (393)
                      ..+.+++++++++  .++.|.+|++.   ..+..........+.+++|+++  .+++++ .++.|.+||+.. +..  ..
T Consensus        89 ~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~  166 (343)
T 1ri6_A           89 ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL--VA  166 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE--EE
T ss_pred             EEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce--ee
Confidence            3445788877655  36789999994   3334444444556889999988  666666 899999999986 321  11


Q ss_pred             ce--eec-CceeeEEEEEEc--CCEEE-EecCCCcEEEeeCCC--cce--eeEec---cC---ccceEEEEEc--CCEEE
Q 016224          266 AA--SLK-GHSLAVVSLVVG--ANKLY-SGSMDNSIRVWNLET--LQC--IQTLT---EH---TSVVMSLLCW--DQFLL  327 (393)
Q Consensus       266 ~~--~~~-~~~~~v~~l~~~--~~~l~-sg~~dg~i~iwd~~~--~~~--~~~~~---~~---~~~v~~l~~~--~~~l~  327 (393)
                      ..  ... .....+..++++  +++++ ++..++.|.+||+..  ++.  ...+.   ..   ...+..++|+  +++|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~  246 (343)
T 1ri6_A          167 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY  246 (343)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred             ecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEE
Confidence            11  111 123356667775  55554 555899999999953  432  22222   11   2345678888  55666


Q ss_pred             -EEeCCCcEEEEEcCC-CcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe-CCCeEEEEeC--Ccee
Q 016224          328 -SCSLDKTIKVWFATD-SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDL--PSVI  391 (393)
Q Consensus       328 -s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s-~dg~I~iwd~--~s~~  391 (393)
                       +...++.|.+||+.. ......+........+..++|+|++.   +|++++ .++.|.+|++  .+++
T Consensus       247 v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~~~~~~~~~v~v~~~d~~~g~  312 (343)
T 1ri6_A          247 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGK---YLIAAGQKSHHISVYEIVGEQGL  312 (343)
T ss_dssp             EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSS---EEEEECTTTCEEEEEEEETTTTE
T ss_pred             EEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCC---EEEEecCCCCeEEEEEEcCCCce
Confidence             555799999999973 12222222222222367788887654   777776 6899999954  4543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.86  E-value=3.6e-19  Score=167.86  Aligned_cols=227  Identities=10%  Similarity=-0.046  Sum_probs=171.8

Q ss_pred             CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCC---cEEEEECCCCeEEEEEecCCceEE--EEeCCCE
Q 016224          129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE---TVRVWDCASGQCAGVINLGGEVGC--MISEGPW  203 (393)
Q Consensus       129 g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg---~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~  203 (393)
                      +.|++||+..+  ..+.+.+|...|.+++|+|++++|++++.|+   .|++||+.+++..........+..  +.++++.
T Consensus       159 ~~i~i~d~~g~--~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~  236 (415)
T 2hqs_A          159 YELRVSDYDGY--NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSK  236 (415)
T ss_dssp             EEEEEEETTSC--SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSE
T ss_pred             ceEEEEcCCCC--CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCE
Confidence            79999999754  4567778999999999999999999999885   999999999988765555544433  4468887


Q ss_pred             EE-EE-cCC--eEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeC-CC--cEEEEEeccCCccccCceeecCcee
Q 016224          204 IF-IG-VTN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ-DG--AILAWKFNVTTNCFEPAASLKGHSL  274 (393)
Q Consensus       204 l~-~~-~~~--~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~-dg--~I~vwd~~~~~~~~~~~~~~~~~~~  274 (393)
                      |+ ++ .++  .|++||+.+++...+..+...+.+++|+|+  .|++++. ++  .|++||+.++.     ...+..+..
T Consensus       237 la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~-----~~~l~~~~~  311 (415)
T 2hqs_A          237 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-----PQRITWEGS  311 (415)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-----CEECCCSSS
T ss_pred             EEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC-----EEEEecCCC
Confidence            77 44 333  699999999988888888899999999998  6776665 45  57777776653     233344556


Q ss_pred             eEEEEEEc--CCEEEEecCC---CcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCC---cEEEEEcCCCc
Q 016224          275 AVVSLVVG--ANKLYSGSMD---NSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDK---TIKVWFATDSG  344 (393)
Q Consensus       275 ~v~~l~~~--~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg---~i~iwd~~~~~  344 (393)
                      .+..++|+  +++|++++.+   ..|++||+.+++. ..+..+. .+.++.|+  +++|++++.++   .|++||+. ++
T Consensus       312 ~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~  388 (415)
T 2hqs_A          312 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GR  388 (415)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SC
T ss_pred             cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CC
Confidence            67777775  6678777654   5899999998876 4555554 78899998  67888888777   79999986 44


Q ss_pred             ceEEEEeecCCccEEEEEeeeCC
Q 016224          345 NLEVTYTHNEEHGVLALCGMPDS  367 (393)
Q Consensus       345 ~~~~~~~~~~~~~v~~~~~~~~~  367 (393)
                      ....+..+.  ..+..++|+|..
T Consensus       389 ~~~~l~~~~--~~v~~~~~~~~~  409 (415)
T 2hqs_A          389 FKARLPATD--GQVKFPAWSPYL  409 (415)
T ss_dssp             CEEECCCSS--SEEEEEEECCCC
T ss_pred             cEEEeeCCC--CCCcCCcccccc
Confidence            455554443  459999998864

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.83  E-value=1e-17  Score=153.62  Aligned_cols=257  Identities=11%  Similarity=0.072  Sum_probs=183.9

Q ss_pred             ecceEEeeEecCc--EEEecC-------CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEE-eCCCcEEEEE
Q 016224          109 KTDILCRNWVQGN--CMYGEK-------CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG-SKDETVRVWD  178 (393)
Q Consensus       109 ~~~i~c~~~~~~~--~~~g~~-------dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~-s~dg~v~iwd  178 (393)
                      ...+..+.|++++  +++++.       ++.|.+||..++ +.+..+.. ...+..++|+|++++++.+ ..++.|.+||
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL-EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC-CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC-eEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            3466788998873  444442       678999999988 67777663 3457789999999966554 5579999999


Q ss_pred             CCCCeEEEEEecCCc----------e--EEEEeCCCEEEEEc---CCeEEEEECCCCceeeecC-CCCcEEEEEEeCC--
Q 016224          179 CASGQCAGVINLGGE----------V--GCMISEGPWIFIGV---TNFVKAWNTQTNTDLSLSG-PVGQVYAMAVGND--  240 (393)
Q Consensus       179 ~~~~~~~~~~~~~~~----------~--~~~~~~~~~l~~~~---~~~i~v~d~~~~~~~~~~~-~~~~v~~l~~~~~--  240 (393)
                      ..+++.+..+..+..          .  ..+.++++.++++.   ++.|.+||..+++...... +...+..+.|+++  
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~  197 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK  197 (353)
T ss_dssp             TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred             CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence            999999888876431          2  34456888777653   6789999999998874433 5666888999987  


Q ss_pred             EEEEEeCCCcEEEEEeccCCccccCceeec----CceeeEEEEEEc--CCEEEEec-CCCcEEEeeCCCcceeeEeccCc
Q 016224          241 LLFAGTQDGAILAWKFNVTTNCFEPAASLK----GHSLAVVSLVVG--ANKLYSGS-MDNSIRVWNLETLQCIQTLTEHT  313 (393)
Q Consensus       241 ~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~----~~~~~v~~l~~~--~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~  313 (393)
                      .|++++.++.|.+||+.+...    ...+.    ++...+..++++  ++++++++ .++.|.+||+.+++.+..+....
T Consensus       198 ~l~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  273 (353)
T 3vgz_A          198 RLYTTNADGELITIDTADNKI----LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE  273 (353)
T ss_dssp             EEEEECTTSEEEEEETTTTEE----EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred             EEEEEcCCCeEEEEECCCCeE----EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence            888889999999999987632    22222    234455556664  66665555 55999999999999988887554


Q ss_pred             cceEEEEEc--CCEEEEE-eCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC
Q 016224          314 SVVMSLLCW--DQFLLSC-SLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND  379 (393)
Q Consensus       314 ~~v~~l~~~--~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d  379 (393)
                      .  ..+.++  +++++++ ..++.|.+||+.+++.+..+..   ......++|+|++.   +|+.+..+
T Consensus       274 ~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~---~l~v~~~~  334 (353)
T 3vgz_A          274 S--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---PTHPNSLALSADGK---TLYVSVKQ  334 (353)
T ss_dssp             C--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---CSEEEEEEECTTSC---EEEEEEEC
T ss_pred             C--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---CCCCCeEEEcCCCC---EEEEEEcc
Confidence            3  346665  6655544 4789999999988776655443   23477888887754   56555544

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.83  E-value=8.3e-19  Score=177.50  Aligned_cols=270  Identities=9%  Similarity=0.025  Sum_probs=188.2

Q ss_pred             ceEEeeEecCc--EEEecC-CC-----eEEEEECCCCcEEEEEecCCcC------------------------CEEEEEe
Q 016224          111 DILCRNWVQGN--CMYGEK-CK-----FLHSWTVGDGFKLLTQLEGHQK------------------------VVSGITL  158 (393)
Q Consensus       111 ~i~c~~~~~~~--~~~g~~-dg-----~i~vwd~~~~~~~~~~l~~h~~------------------------~I~~i~~  158 (393)
                      .+..++|++++  +++++. |+     .|++||+.++ +....+..|..                        .|.+++|
T Consensus        38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (741)
T 2ecf_A           38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG-QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW  116 (741)
T ss_dssp             CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC-CEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred             CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC-ceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence            67899999874  556666 77     9999999988 66666655443                        3789999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCC---eEEEEEecCCce--EEEEeCCCEEEEEcCCeEEEEECCCCceeeecCC-CCc-
Q 016224          159 PSGSDKLYSGSKDETVRVWDCASG---QCAGVINLGGEV--GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGP-VGQ-  231 (393)
Q Consensus       159 s~~~~~l~s~s~dg~v~iwd~~~~---~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~-~~~-  231 (393)
                      +||+++|++++. +.|.+||+.++   +..........+  ..+.++++.|+.+.++.|++||+.+++...+... ... 
T Consensus       117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~  195 (741)
T 2ecf_A          117 SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTI  195 (741)
T ss_dssp             CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSE
T ss_pred             CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccce
Confidence            999999999987 89999999988   544333333333  3455799999988888999999999877644332 221 


Q ss_pred             ---------------EEEEEEeCC--EEEEEeCCC---------------------------------cEEEEEecc-CC
Q 016224          232 ---------------VYAMAVGND--LLFAGTQDG---------------------------------AILAWKFNV-TT  260 (393)
Q Consensus       232 ---------------v~~l~~~~~--~l~~~~~dg---------------------------------~I~vwd~~~-~~  260 (393)
                                     +..+.|+||  .|++++.|+                                 .|.+||+.+ +.
T Consensus       196 ~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~  275 (741)
T 2ecf_A          196 GNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ  275 (741)
T ss_dssp             EESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC
T ss_pred             eccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc
Confidence                           477999998  777776655                                 788888876 53


Q ss_pred             ccccCceeecCceeeEEEEEE-cCCEEEEecC-----CCcEEEeeCCCcceeeEeccCcc----ceEEEEEc--CCEEEE
Q 016224          261 NCFEPAASLKGHSLAVVSLVV-GANKLYSGSM-----DNSIRVWNLETLQCIQTLTEHTS----VVMSLLCW--DQFLLS  328 (393)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~l~~-~~~~l~sg~~-----dg~i~iwd~~~~~~~~~~~~~~~----~v~~l~~~--~~~l~s  328 (393)
                      .  ..+.....|...+..++| ++++|++++.     +..|++||+.+++....+..+..    .+..+.|+  ++++++
T Consensus       276 ~--~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~  353 (741)
T 2ecf_A          276 T--QWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWS  353 (741)
T ss_dssp             C--EEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEE
T ss_pred             e--EEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEE
Confidence            2  111111135566665554 5667776543     67899999999988777765543    34567777  678889


Q ss_pred             EeCCCcEEEEEcCCCcceEEEEeecCCccEEEE-EeeeCCCCCcEEEEEeCCC--eEEEEeCC
Q 016224          329 CSLDKTIKVWFATDSGNLEVTYTHNEEHGVLAL-CGMPDSEGKPVLLCSCNDN--SVRFYDLP  388 (393)
Q Consensus       329 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~l~s~s~dg--~I~iwd~~  388 (393)
                      ++.|+.++||.+........+..+  ...+..+ .|+|++.  .++++++.++  .++||++.
T Consensus       354 ~~~~g~~~l~~~~~~~~~~~l~~~--~~~v~~~~~~s~dg~--~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          354 SERTGFQHLYRIDSKGKAAALTHG--NWSVDELLAVDEKAG--LAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             ECTTSSCEEEEECSSSCEEESCCS--SSCEEEEEEEETTTT--EEEEEECSSCTTCBEEEEEE
T ss_pred             ecCCCccEEEEEcCCCCeeeeeec--ceEEEeEeEEeCCCC--EEEEEEeCCCCceEEEEEEE
Confidence            999998888877532223333333  3346666 4887754  2445666666  89999875

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.82  E-value=1.2e-18  Score=175.48  Aligned_cols=270  Identities=9%  Similarity=-0.009  Sum_probs=189.8

Q ss_pred             cceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC-----CeE
Q 016224          110 TDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-----GQC  184 (393)
Q Consensus       110 ~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~-----~~~  184 (393)
                      ..+.+++|+++..++.+.++.|++||+.++ +.. .+..+...+.+++|+|||++|+++ .|+.|++||+.+     ++.
T Consensus        82 ~~v~~~~~spd~~~~~~~~~~i~~~d~~~~-~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~  158 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLFTQGGLVGFDMLAR-KVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA  158 (706)
T ss_dssp             CCCEEEEETTTTEEEEEETTEEEEEETTTT-EEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC
T ss_pred             cCceeEEECCCCeEEEEECCEEEEEECCCC-ceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc
Confidence            468999999987766667799999999887 544 445577789999999999999995 679999999998     776


Q ss_pred             EEEEecCC-----------------ceEEEEeCCCEEEEEc----------------------------------CCeEE
Q 016224          185 AGVINLGG-----------------EVGCMISEGPWIFIGV----------------------------------TNFVK  213 (393)
Q Consensus       185 ~~~~~~~~-----------------~~~~~~~~~~~l~~~~----------------------------------~~~i~  213 (393)
                      ........                 ....+.++++.|+++.                                  +..|.
T Consensus       159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~  238 (706)
T 2z3z_A          159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG  238 (706)
T ss_dssp             EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred             EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence            65443332                 2344567899888753                                  24799


Q ss_pred             EEECCCCceeeec---CCCCcEEEEEEeCC--EEEEEeCCC-----cEEEEEeccCCccccCceeecCcee---eEEEEE
Q 016224          214 AWNTQTNTDLSLS---GPVGQVYAMAVGND--LLFAGTQDG-----AILAWKFNVTTNCFEPAASLKGHSL---AVVSLV  280 (393)
Q Consensus       214 v~d~~~~~~~~~~---~~~~~v~~l~~~~~--~l~~~~~dg-----~I~vwd~~~~~~~~~~~~~~~~~~~---~v~~l~  280 (393)
                      +||+.+++...+.   .+...+..++|+|+  .|++++.++     .|++||+.++... ..+.. ..+..   .+..+.
T Consensus       239 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~-~~~~~-~~~~~~~~~~~~~~  316 (706)
T 2z3z_A          239 IYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFV-RTLFV-ETDKHYVEPLHPLT  316 (706)
T ss_dssp             EEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEE-EEEEE-EECSSCCCCCSCCE
T ss_pred             EEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCcee-eEEEE-ccCCCeECccCCce
Confidence            9999998866433   46678999999998  677777665     8999998876211 11111 11111   123344


Q ss_pred             E----cCCEEEEecCCCcEEEeeCC-CcceeeEeccCccceEE-EEEc--CCEEEEE-eCCC----cEEEEEcCCCcceE
Q 016224          281 V----GANKLYSGSMDNSIRVWNLE-TLQCIQTLTEHTSVVMS-LLCW--DQFLLSC-SLDK----TIKVWFATDSGNLE  347 (393)
Q Consensus       281 ~----~~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~-l~~~--~~~l~s~-s~dg----~i~iwd~~~~~~~~  347 (393)
                      |    ++++++++..|+.++||++. +++.+..+..+...+.. +.|+  ++.|+.+ +.++    .|..||+.++. ..
T Consensus       317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~  395 (706)
T 2z3z_A          317 FLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TK  395 (706)
T ss_dssp             ECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CE
T ss_pred             eecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ce
Confidence            4    55688899999999999886 67778888888877876 6887  5566544 4444    56666765543 22


Q ss_pred             EEEeecCCccEEEEEeeeCCCCCcEEEEEeC-C---CeEEEEeCCcee
Q 016224          348 VTYTHNEEHGVLALCGMPDSEGKPVLLCSCN-D---NSVRFYDLPSVI  391 (393)
Q Consensus       348 ~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~-d---g~I~iwd~~s~~  391 (393)
                      .+. +  ...+..++|+|++.   +|+.... +   +.|++||+.+++
T Consensus       396 ~l~-~--~~~~~~~~~spdg~---~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          396 DLT-P--ESGMHRTQLSPDGS---AIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             ESC-C--SSSEEEEEECTTSS---EEEEEEECSSCSCEEEEEESSSCE
T ss_pred             ecc-C--CCceEEEEECCCCC---EEEEEecCCCCCcEEEEEECCCCe
Confidence            222 2  33478889988765   6665543 3   569999998764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.81  E-value=2.6e-18  Score=172.95  Aligned_cols=269  Identities=11%  Similarity=0.040  Sum_probs=177.8

Q ss_pred             eEEeeEecCcEEEecCCCeEEEEECCCCcEEE-EEecCCc-----------------CCEEEEEecCCCCEEEEEeCCCc
Q 016224          112 ILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLL-TQLEGHQ-----------------KVVSGITLPSGSDKLYSGSKDET  173 (393)
Q Consensus       112 i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~-~~l~~h~-----------------~~I~~i~~s~~~~~l~s~s~dg~  173 (393)
                      +..+.|..+.+++++.++ | +||+.++ +.+ ..+..|.                 ..|.+++|+|| ++++.+. ++.
T Consensus        28 ~~~~~w~g~~~~~~~~~~-i-~~d~~tg-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~  102 (706)
T 2z3z_A           28 VVGLQWMGDNYVFIEGDD-L-VFNKANG-KSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGG  102 (706)
T ss_dssp             CTTCEEETTEEEEEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTE
T ss_pred             CCCCcCcCCeEEEEeCCc-E-EEECCCC-cEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCE
Confidence            344677755666777777 8 9999988 442 3333333                 56999999999 6666554 599


Q ss_pred             EEEEECCCCeEEEEEecCCce--EEEEeCCCEEEEEcCCeEEEEECCC-----CceeeecC-CCCc--------------
Q 016224          174 VRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIGVTNFVKAWNTQT-----NTDLSLSG-PVGQ--------------  231 (393)
Q Consensus       174 v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~i~v~d~~~-----~~~~~~~~-~~~~--------------  231 (393)
                      |++||+.+++..........+  ..+.++++.|+...++.|++|++.+     ++...+.. +...              
T Consensus       103 i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~  182 (706)
T 2z3z_A          103 LVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGI  182 (706)
T ss_dssp             EEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTC
T ss_pred             EEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCC
Confidence            999999999877666544332  4566899999988999999999998     76654332 2222              


Q ss_pred             EEEEEEeCC--EEEEEe---------------------------------CCCcEEEEEeccCCccccCceeecCceeeE
Q 016224          232 VYAMAVGND--LLFAGT---------------------------------QDGAILAWKFNVTTNCFEPAASLKGHSLAV  276 (393)
Q Consensus       232 v~~l~~~~~--~l~~~~---------------------------------~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v  276 (393)
                      +.++.|+|+  .|++++                                 .+..|++||+.++..  ..+.....|...+
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~--~~~~~~~~~~~~~  260 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT--VYLQTGEPKEKFL  260 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE--EECCCCSCTTCEE
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce--EeeccCCCCceeE
Confidence            478999998  777776                                 446799999987632  1111122466778


Q ss_pred             EEEEEc--CCEEEEecCCC-----cEEEeeCCCcceeeEec-c-Ccc---ceEEEEEc----CCEEEEEeCCCcEEEEEc
Q 016224          277 VSLVVG--ANKLYSGSMDN-----SIRVWNLETLQCIQTLT-E-HTS---VVMSLLCW----DQFLLSCSLDKTIKVWFA  340 (393)
Q Consensus       277 ~~l~~~--~~~l~sg~~dg-----~i~iwd~~~~~~~~~~~-~-~~~---~v~~l~~~----~~~l~s~s~dg~i~iwd~  340 (393)
                      ..++|+  +++|++++.++     .|++||+.+++....+. . +..   .+..+.|+    ++++++++.|+.++||++
T Consensus       261 ~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~  340 (706)
T 2z3z_A          261 TNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLY  340 (706)
T ss_dssp             EEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEE
T ss_pred             eeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEE
Confidence            888885  56788877665     99999999984444332 1 221   23456664    468889999999999988


Q ss_pred             C-CCcceEEEEeecCCccEEE-EEeeeCCCCCcEEEEEeCCC----eEEEEeCCcee
Q 016224          341 T-DSGNLEVTYTHNEEHGVLA-LCGMPDSEGKPVLLCSCNDN----SVRFYDLPSVI  391 (393)
Q Consensus       341 ~-~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~l~s~s~dg----~I~iwd~~s~~  391 (393)
                      . +++.+..+..+  ...+.. +.|+|++.  .++++++.++    .|..||+.+++
T Consensus       341 ~~~~~~~~~l~~~--~~~v~~~~~~spdg~--~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          341 DTTGRLIRQVTKG--EWEVTNFAGFDPKGT--RLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             ETTSCEEEECCCS--SSCEEEEEEECTTSS--EEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             ECCCCEEEecCCC--CeEEEeeeEEcCCCC--EEEEEecCCCCceEEEEEEEcCCCC
Confidence            6 44444444333  233555 68877654  2444555555    67778877653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.80  E-value=4.8e-18  Score=178.27  Aligned_cols=269  Identities=12%  Similarity=0.039  Sum_probs=205.3

Q ss_pred             ceeecceEEeeEecCcEE-EecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 016224          106 AVIKTDILCRNWVQGNCM-YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC  184 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~~~~-~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~  184 (393)
                      ..|...+.+..|+++.++ +++.++.+.||.+.........+..|. .+..++|+|++++|+++. ++.|.+||+...+.
T Consensus       200 ~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l  277 (1045)
T 1k32_A          200 VDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKI  277 (1045)
T ss_dssp             ECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCE
T ss_pred             cCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceEe
Confidence            456678899999988655 467788889998653213445666665 456779999999999874 89999999955443


Q ss_pred             EEEEecC--------------CceEEEE-eCCCEEEEEcCCeEEEEECCCCceeeecCCCC-cEEEEEEeCC--EEEEEe
Q 016224          185 AGVINLG--------------GEVGCMI-SEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVG-QVYAMAVGND--LLFAGT  246 (393)
Q Consensus       185 ~~~~~~~--------------~~~~~~~-~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~-~v~~l~~~~~--~l~~~~  246 (393)
                      . .+...              .....+. ++++.++.+.++.|.+|+...+....+..+.. .+..+.|+ +  .|++++
T Consensus       278 ~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s  355 (1045)
T 1k32_A          278 E-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGT  355 (1045)
T ss_dssp             E-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEE
T ss_pred             e-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEE
Confidence            3 44331              2335567 88988888889999999999988777777877 89999999 8  778888


Q ss_pred             CCCcEE-EEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc-
Q 016224          247 QDGAIL-AWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-  322 (393)
Q Consensus       247 ~dg~I~-vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-  322 (393)
                      .+..|. +||+..+.     ...+..|...+..++|+  +++|++++.++.|++||+.+++....+..|...+.+++|+ 
T Consensus       356 ~~~~l~~~~d~~~~~-----~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp  430 (1045)
T 1k32_A          356 REGDFLGIYDYRTGK-----AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD  430 (1045)
T ss_dssp             TTEEEEEEEETTTCC-----EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT
T ss_pred             CCCceEEEEECCCCC-----ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC
Confidence            888888 88887652     12333666778888875  6689999999999999999999888887899899999998 


Q ss_pred             -CCEEEEEeCCC----------cEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          323 -DQFLLSCSLDK----------TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       323 -~~~l~s~s~dg----------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                       +++|++++.++          .|++||+.+++ ...+..+  ...+..+.|+|++.   +|++++.++...+|+...
T Consensus       431 DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~--~~~~~~~~~spdG~---~l~~~s~~~~~~~~~~~~  502 (1045)
T 1k32_A          431 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTE--NSHDYAPAFDADSK---NLYYLSYRSLDPSPDRVV  502 (1045)
T ss_dssp             TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCS--SSBEEEEEECTTSC---EEEEEESCCCCCEECSSS
T ss_pred             CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCC--CcccCCceEcCCCC---EEEEEecccCCcCcchhc
Confidence             67888877654          89999998765 4333333  33477788988766   899999988888887643

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.80  E-value=9.3e-17  Score=147.24  Aligned_cols=234  Identities=11%  Similarity=0.073  Sum_probs=169.7

Q ss_pred             CcCCEEEEEecCCCCEEEEEeC-------CCcEEEEECCCCeEEEEEecCCce--EEEEeCCCEEEEE--cCCeEEEEEC
Q 016224          149 HQKVVSGITLPSGSDKLYSGSK-------DETVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIG--VTNFVKAWNT  217 (393)
Q Consensus       149 h~~~I~~i~~s~~~~~l~s~s~-------dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~--~~~~i~v~d~  217 (393)
                      ....+..++|+|++++|++++.       ++.|.+||..+++.+..+......  ..+.++++.++++  .++.|.+||.
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            4467889999999999988874       568999999999998888765433  4456788866554  4579999999


Q ss_pred             CCCcee-eecCCCC---------cEEEEEEeCC--EEEEEe--CCCcEEEEEeccCCccccCceeecCceeeEEEEEE--
Q 016224          218 QTNTDL-SLSGPVG---------QVYAMAVGND--LLFAGT--QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--  281 (393)
Q Consensus       218 ~~~~~~-~~~~~~~---------~v~~l~~~~~--~l~~~~--~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~--  281 (393)
                      .+++.. .+..+..         .+..+.++++  .++++.  .++.|.+||+.+.    +....+..+...+..+.+  
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~s~  194 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI----KLKTAIQNTGKMSTGLALDS  194 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT----EEEEEECCCCTTCCCCEEET
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC----ceEEEecCCCCccceEEECC
Confidence            998876 3333221         2788999987  555554  5889999999876    333444423333444444  


Q ss_pred             cCCEEEEecCCCcEEEeeCCCcceeeEecc----CccceEEEEEc--CCEEEEEeC-CCcEEEEEcCCCcceEEEEeecC
Q 016224          282 GANKLYSGSMDNSIRVWNLETLQCIQTLTE----HTSVVMSLLCW--DQFLLSCSL-DKTIKVWFATDSGNLEVTYTHNE  354 (393)
Q Consensus       282 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~l~~~--~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~  354 (393)
                      +++++++++.++.|.+||+.+++.+..+..    +...+..++++  ++++++++. ++.|.+||+.+++....+.... 
T Consensus       195 dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-  273 (353)
T 3vgz_A          195 EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-  273 (353)
T ss_dssp             TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-
T ss_pred             CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-
Confidence            677899999999999999999998887764    45567778887  666665554 5999999998877666555322 


Q ss_pred             CccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          355 EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       355 ~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                         ...+.|+|++.  .++++...++.|.+||+.++++
T Consensus       274 ---~~~~~~s~dg~--~l~v~~~~~~~v~~~d~~~~~~  306 (353)
T 3vgz_A          274 ---SLAVLFNPARN--EAYVTHRQAGKVSVIDAKSYKV  306 (353)
T ss_dssp             ---CCCEEEETTTT--EEEEEETTTTEEEEEETTTTEE
T ss_pred             ---CceEEECCCCC--EEEEEECCCCeEEEEECCCCeE
Confidence               24577777654  2445555799999999998764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.80  E-value=2.2e-18  Score=173.80  Aligned_cols=268  Identities=9%  Similarity=0.036  Sum_probs=180.8

Q ss_pred             ceEEeeEecCc-EEEecCCCeEEEEECCCCcEEEEEecCCcC---CEEEEEecCCCCEEEEEeCC---------CcEEEE
Q 016224          111 DILCRNWVQGN-CMYGEKCKFLHSWTVGDGFKLLTQLEGHQK---VVSGITLPSGSDKLYSGSKD---------ETVRVW  177 (393)
Q Consensus       111 ~i~c~~~~~~~-~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~---~I~~i~~s~~~~~l~s~s~d---------g~v~iw  177 (393)
                      ....+.|++++ +++.+.||.|++||+.++ +....+..|..   .|.+++|||||++|++++.+         +.|.+|
T Consensus        18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g-~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYREQKGTVRLWNVETN-TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCCCSSSCEEEBCGGGC-CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEEeCCCCEEEEECCCC-cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            35677888774 445578999999999988 66677777765   49999999999999999875         788899


Q ss_pred             ECCCCeEEEEEecC-C-----ceEEEEeCCCEEEEEcCCeEEEEECCCCceeeec-CCCCc------------------E
Q 016224          178 DCASGQCAGVINLG-G-----EVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS-GPVGQ------------------V  232 (393)
Q Consensus       178 d~~~~~~~~~~~~~-~-----~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~-~~~~~------------------v  232 (393)
                      |+.+++. ..+... .     ....+.++++.|+.+.++.|++|++.+++...+. .+...                  +
T Consensus        97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~  175 (723)
T 1xfd_A           97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH  175 (723)
T ss_dssp             ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred             ECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence            9999876 333221 1     1234567999999888899999999988766433 22322                  3


Q ss_pred             EEEEEeCC--EEEEEeCCC----------------------------------cEEEEEeccCCccccCceeecC-----
Q 016224          233 YAMAVGND--LLFAGTQDG----------------------------------AILAWKFNVTTNCFEPAASLKG-----  271 (393)
Q Consensus       233 ~~l~~~~~--~l~~~~~dg----------------------------------~I~vwd~~~~~~~~~~~~~~~~-----  271 (393)
                      .++.|+||  .|++++.++                                  .|++||+.++..    ...+..     
T Consensus       176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~----~~~l~~~~~~~  251 (723)
T 1xfd_A          176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH----DLEMMPPDDPR  251 (723)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC----CEECCCCCCGG
T ss_pred             ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce----eEEeeCCccCC
Confidence            78999998  777766543                                  789999887632    222332     


Q ss_pred             -ceeeEEEEEEc--CCEEEEec----CCCcEEEeeCCCcceeeEeccC-ccce----EEEEEc--CCEEEE--EeCCC--
Q 016224          272 -HSLAVVSLVVG--ANKLYSGS----MDNSIRVWNLETLQCIQTLTEH-TSVV----MSLLCW--DQFLLS--CSLDK--  333 (393)
Q Consensus       272 -~~~~v~~l~~~--~~~l~sg~----~dg~i~iwd~~~~~~~~~~~~~-~~~v----~~l~~~--~~~l~s--~s~dg--  333 (393)
                       +...+..++|+  +++|++..    .+..|++||+.++++...+..+ ...+    ..+.|+  ++.|+.  ...++  
T Consensus       252 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  331 (723)
T 1xfd_A          252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR  331 (723)
T ss_dssp             GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred             CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence             35678888886  44665553    3468999999999877666433 3333    267777  555543  55677  


Q ss_pred             ----cEEEEEcCCCcc---eEEEEeecCCccEEE-EEeeeCCCCCcEEEEEeC-C--CeEEEEeCCc
Q 016224          334 ----TIKVWFATDSGN---LEVTYTHNEEHGVLA-LCGMPDSEGKPVLLCSCN-D--NSVRFYDLPS  389 (393)
Q Consensus       334 ----~i~iwd~~~~~~---~~~~~~~~~~~~v~~-~~~~~~~~~~~~l~s~s~-d--g~I~iwd~~s  389 (393)
                          .|.+||+.+...   ...+...  ...+.. +.|+|++.   .|+..+. +  +.++||++..
T Consensus       332 ~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~---~l~~~~~~~~~~~~~l~~~~~  393 (723)
T 1xfd_A          332 GKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGN---KIYFLSTEDLPRRRQLYSANT  393 (723)
T ss_dssp             SCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTT---EEEEEESSSCTTCCEEEEECS
T ss_pred             cceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCC---EEEEEEcCCCCcceEEEEEeC
Confidence                466677323333   3333221  222443 58888765   6665544 4  8899999853

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.79  E-value=4.4e-16  Score=143.69  Aligned_cols=262  Identities=13%  Similarity=0.166  Sum_probs=166.3

Q ss_pred             cCCCeEEEEECC--CC-cEEEEEecCCcCCEEEEEecCCCCEEEEEeCC----CcEEEEECCC--CeE--EEEEe-cCCc
Q 016224          126 EKCKFLHSWTVG--DG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD----ETVRVWDCAS--GQC--AGVIN-LGGE  193 (393)
Q Consensus       126 ~~dg~i~vwd~~--~~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d----g~v~iwd~~~--~~~--~~~~~-~~~~  193 (393)
                      +.++.|++|.++  ++ .+.+..+  +...+..++|+|++++|++++.+    +.|.+|++..  ++.  +.... ....
T Consensus        24 ~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~  101 (361)
T 3scy_A           24 GNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGAD  101 (361)
T ss_dssp             SSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSC
T ss_pred             CCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCC
Confidence            456789998764  44 2233333  77788889999999999999986    7999998865  443  33333 2233


Q ss_pred             eEEEEeCCCEEEEE--cCCeEEEEECCCCcee-ee------c--------CCCCcEEEEEEeCC--EEEE-EeCCCcEEE
Q 016224          194 VGCMISEGPWIFIG--VTNFVKAWNTQTNTDL-SL------S--------GPVGQVYAMAVGND--LLFA-GTQDGAILA  253 (393)
Q Consensus       194 ~~~~~~~~~~l~~~--~~~~i~v~d~~~~~~~-~~------~--------~~~~~v~~l~~~~~--~l~~-~~~dg~I~v  253 (393)
                      ...+..++++++++  .++.|.+|++.....+ ..      .        .+...+.+++|+|+  +|++ ...++.|.+
T Consensus       102 p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v  181 (361)
T 3scy_A          102 PCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHK  181 (361)
T ss_dssp             EEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             cEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEE
Confidence            33333488877765  5679999999754332 11      1        11234688999998  4544 445889999


Q ss_pred             EEeccCCc----c-ccCc----eeecCceeeEEEEEEc--CCEEEEec-CCCcEEEeeCCCcce--eeEec---cCccce
Q 016224          254 WKFNVTTN----C-FEPA----ASLKGHSLAVVSLVVG--ANKLYSGS-MDNSIRVWNLETLQC--IQTLT---EHTSVV  316 (393)
Q Consensus       254 wd~~~~~~----~-~~~~----~~~~~~~~~v~~l~~~--~~~l~sg~-~dg~i~iwd~~~~~~--~~~~~---~~~~~v  316 (393)
                      |++.....    . +...    .....+......++|+  ++++++++ .++.|.+||+.+++.  +..+.   .+....
T Consensus       182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~  261 (361)
T 3scy_A          182 FNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGS  261 (361)
T ss_dssp             EEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCE
T ss_pred             EEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCc
Confidence            99986532    1 1110    1112223345566765  55666665 689999999987654  33332   233446


Q ss_pred             EEEEEc--CCEEEEEeC--CCcEEEEEcCC-CcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe-CCCeEEEE--eCC
Q 016224          317 MSLLCW--DQFLLSCSL--DKTIKVWFATD-SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFY--DLP  388 (393)
Q Consensus       317 ~~l~~~--~~~l~s~s~--dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s-~dg~I~iw--d~~  388 (393)
                      ..++|+  +++|+++..  ++.|.+|++.. ...+..+........+..++|+|++.   +|++++ .++.|.+|  |..
T Consensus       262 ~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~---~l~~~~~~~~~v~v~~~d~~  338 (361)
T 3scy_A          262 GDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGK---YLLVACRDTNVIQIFERDQA  338 (361)
T ss_dssp             EEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSC---EEEEEETTTTEEEEEEECTT
T ss_pred             ccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCC---EEEEEECCCCCEEEEEEECC
Confidence            788887  677766655  48999999962 23332322222234567888888765   777776 67999995  555


Q ss_pred             ceee
Q 016224          389 SVII  392 (393)
Q Consensus       389 s~~l  392 (393)
                      ++++
T Consensus       339 ~g~~  342 (361)
T 3scy_A          339 TGLL  342 (361)
T ss_dssp             TCCE
T ss_pred             CCcE
Confidence            6654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.79  E-value=8.2e-17  Score=146.78  Aligned_cols=257  Identities=9%  Similarity=0.089  Sum_probs=167.2

Q ss_pred             eecceEEeeEecCc--EEEecCC-CeEEEEECC--CC-cEEEEEecCCcCCEEEEEecCCCCEEEEEeC-CCcEEEEECC
Q 016224          108 IKTDILCRNWVQGN--CMYGEKC-KFLHSWTVG--DG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCA  180 (393)
Q Consensus       108 ~~~~i~c~~~~~~~--~~~g~~d-g~i~vwd~~--~~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~-dg~v~iwd~~  180 (393)
                      +...+.+++|++++  +++++.+ +.|.+|++.  ++ .+.+..+..+. .+..++|+|++++|++++. ++.|.+||+.
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~  114 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE  114 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence            34467889998774  4555555 999999997  44 24455666554 7899999999998877765 8899999994


Q ss_pred             ---CCeEEEEEecCCce--EEEEeCCCEEEEE--cCCeEEEEECCC-Ccee-----eec-CCCCcEEEEEEeCC--EEE-
Q 016224          181 ---SGQCAGVINLGGEV--GCMISEGPWIFIG--VTNFVKAWNTQT-NTDL-----SLS-GPVGQVYAMAVGND--LLF-  243 (393)
Q Consensus       181 ---~~~~~~~~~~~~~~--~~~~~~~~~l~~~--~~~~i~v~d~~~-~~~~-----~~~-~~~~~v~~l~~~~~--~l~-  243 (393)
                         +.+.+..+.....+  ..+.++++.++++  .++.|.+|++.+ ++..     ... .....+..++|+|+  +++ 
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~  194 (343)
T 1ri6_A          115 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYC  194 (343)
T ss_dssp             TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEE
T ss_pred             CCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEE
Confidence               44455555544433  3345678776665  678999999987 5443     122 23457889999998  454 


Q ss_pred             EEeCCCcEEEEEeccCCccccCceeec----Cc--eeeEEEEEEc--CCEEE-EecCCCcEEEeeCC----CcceeeEec
Q 016224          244 AGTQDGAILAWKFNVTTNCFEPAASLK----GH--SLAVVSLVVG--ANKLY-SGSMDNSIRVWNLE----TLQCIQTLT  310 (393)
Q Consensus       244 ~~~~dg~I~vwd~~~~~~~~~~~~~~~----~~--~~~v~~l~~~--~~~l~-sg~~dg~i~iwd~~----~~~~~~~~~  310 (393)
                      ++..++.|.+|++..............    .+  ...+..++++  +++|+ +...++.|.+||+.    +.+.+..+.
T Consensus       195 ~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~  274 (343)
T 1ri6_A          195 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP  274 (343)
T ss_dssp             EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE
T ss_pred             EeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec
Confidence            455889999999965322111111111    11  2345567775  55665 56689999999998    345555565


Q ss_pred             cCccceEEEEEc--CCEEEEEe-CCCcEEEEEcC--CCcceEEEEeecCCccEEEEEeeeCC
Q 016224          311 EHTSVVMSLLCW--DQFLLSCS-LDKTIKVWFAT--DSGNLEVTYTHNEEHGVLALCGMPDS  367 (393)
Q Consensus       311 ~~~~~v~~l~~~--~~~l~s~s-~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~  367 (393)
                      .+.. +..++|+  +++|++++ .++.|.+|++.  ++. +..+...........+++.++.
T Consensus       275 ~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~-~~~~~~~~~g~~p~~i~~~~~~  334 (343)
T 1ri6_A          275 TETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL-LHEKGRYAVGQGPMWVVVNAHE  334 (343)
T ss_dssp             CSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE-EEEEEEEECSSSCCEEEEEEEC
T ss_pred             CCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCce-eeEccccccCCCCeeEEEEccc
Confidence            5544 7788887  67777777 68999999654  332 2333222222335556666543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.78  E-value=5.2e-16  Score=142.33  Aligned_cols=261  Identities=12%  Similarity=0.128  Sum_probs=162.6

Q ss_pred             cCCCeEEEEECC--CCcEEEE-EecCCcCCEEEEEecCCCCEEEEEeC---CCcEEEEECCCCeE--EEEEe-cCC--ce
Q 016224          126 EKCKFLHSWTVG--DGFKLLT-QLEGHQKVVSGITLPSGSDKLYSGSK---DETVRVWDCASGQC--AGVIN-LGG--EV  194 (393)
Q Consensus       126 ~~dg~i~vwd~~--~~~~~~~-~l~~h~~~I~~i~~s~~~~~l~s~s~---dg~v~iwd~~~~~~--~~~~~-~~~--~~  194 (393)
                      +.++.|++|+++  ++ ++.. ....+...+..++|+|+++ |++++.   ++.|.+|++.+++.  +..+. ...  ..
T Consensus        13 ~~~~~i~v~~~d~~tg-~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~   90 (347)
T 3hfq_A           13 KTSQGIYQGTLDTTAK-TLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAY   90 (347)
T ss_dssp             SSCCEEEEEEEETTTT-EEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred             CCCCCEEEEEEcCCCC-eEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEE
Confidence            345667777654  45 3322 3344567788899999999 665554   68999999987763  33321 222  23


Q ss_pred             EEEEeCCCEEEEE--cCCeEEEEECCC-Ccee---eecC---------CCCcEEEEEEeCC--EEEEEeCCCcEEEEEec
Q 016224          195 GCMISEGPWIFIG--VTNFVKAWNTQT-NTDL---SLSG---------PVGQVYAMAVGND--LLFAGTQDGAILAWKFN  257 (393)
Q Consensus       195 ~~~~~~~~~l~~~--~~~~i~v~d~~~-~~~~---~~~~---------~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~  257 (393)
                      ..+.+++++|+++  .++.|.+|++.. +...   .+..         ....+.+++|+|+  ++++...++.|.+|++.
T Consensus        91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~  170 (347)
T 3hfq_A           91 VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVS  170 (347)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEEC
Confidence            4566789877765  467999999963 3322   1111         1234889999988  66677778999999998


Q ss_pred             cCCccccCceeecC-ceeeEEEEEEc--CCEEE-EecCCCcEEEeeCCC--cce--eeEeccCc------cceEEEEEc-
Q 016224          258 VTTNCFEPAASLKG-HSLAVVSLVVG--ANKLY-SGSMDNSIRVWNLET--LQC--IQTLTEHT------SVVMSLLCW-  322 (393)
Q Consensus       258 ~~~~~~~~~~~~~~-~~~~v~~l~~~--~~~l~-sg~~dg~i~iwd~~~--~~~--~~~~~~~~------~~v~~l~~~-  322 (393)
                      .... ......+.. .......++++  +++++ +...++.|.+|++..  ++.  +..+....      ..+..++|+ 
T Consensus       171 ~~g~-~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp  249 (347)
T 3hfq_A          171 DAGQ-LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH  249 (347)
T ss_dssp             TTSC-EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred             CCCc-EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence            3211 111111111 12234556665  56554 466789999999874  443  23333222      347788888 


Q ss_pred             -CCEE-EEEeCCCcEEEEEcCCCcceEEEEeecC-CccEEEEEeeeCCCCCcEEEEEeC-CCeEEEE--eCCceee
Q 016224          323 -DQFL-LSCSLDKTIKVWFATDSGNLEVTYTHNE-EHGVLALCGMPDSEGKPVLLCSCN-DNSVRFY--DLPSVII  392 (393)
Q Consensus       323 -~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~l~s~s~-dg~I~iw--d~~s~~l  392 (393)
                       +++| ++...++.|.+|++.....+..+..... ...+..++|+|++.   +|++++. ++.|.+|  |..++++
T Consensus       250 dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~---~l~v~~~~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          250 DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEA---FVVVVNQNTDNATLYARDLTSGKL  322 (347)
T ss_dssp             TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSS---EEEEEETTTTEEEEEEECTTTCCE
T ss_pred             CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCC---EEEEEEcCCCcEEEEEEeCCCCeE
Confidence             6666 5566789999999974433333332222 23467888887755   7777765 5899999  5566654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.78  E-value=1.5e-17  Score=157.54  Aligned_cols=192  Identities=14%  Similarity=0.110  Sum_probs=138.6

Q ss_pred             ceEEeeEecC--cEEEecCCCeEEEEECCCC----------cEEE-----EEecCCcCCEEEEEecCCCCEEE----EEe
Q 016224          111 DILCRNWVQG--NCMYGEKCKFLHSWTVGDG----------FKLL-----TQLEGHQKVVSGITLPSGSDKLY----SGS  169 (393)
Q Consensus       111 ~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~----------~~~~-----~~l~~h~~~I~~i~~s~~~~~l~----s~s  169 (393)
                      .+.++++++.  .+++++.++ +++|+....          ....     ..+ .|...|++++|+|++++|+    +++
T Consensus        38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEeccC
Confidence            4567777754  344566666 888875310          0111     112 3667899999999999999    788


Q ss_pred             CCCcEEEEECCCCe--------EEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC-
Q 016224          170 KDETVRVWDCASGQ--------CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-  240 (393)
Q Consensus       170 ~dg~v~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~-  240 (393)
                      .|++|+|||+.++.        .+..                                  ...+.+|...|.+++|+|+ 
T Consensus       116 ~d~~v~iwd~~~~~~~~~~~~~~~~~----------------------------------~~~~~~h~~~V~~v~~~p~~  161 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEAKQQKRPFAY----------------------------------HKLLKDAGGMVIDMKWNPTV  161 (434)
T ss_dssp             TEEEEEEEEHHHHHCTTCSSCCCSEE----------------------------------EECCCSGGGSEEEEEECSSC
T ss_pred             CCceEEEEEccccccCCcCCcceeee----------------------------------eeccCCCCCceEEEEECCCC
Confidence            99999999986541        1100                                  1134568899999999985 


Q ss_pred             --EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccC----
Q 016224          241 --LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEH----  312 (393)
Q Consensus       241 --~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~----  312 (393)
                        +|++++.||+|++||+++.    .......+|...|.+++|+  +++|++|+.||.|++||++ ++....+..|    
T Consensus       162 ~~~las~s~Dg~v~iwD~~~~----~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~  236 (434)
T 2oit_A          162 PSMVAVCLADGSIAVLQVTET----VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYE  236 (434)
T ss_dssp             TTEEEEEETTSCEEEEEESSS----EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCC
T ss_pred             CCEEEEEECCCeEEEEEcCCC----cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccC
Confidence              8999999999999999886    2334455688899999997  6699999999999999998 5666655443    


Q ss_pred             ---ccceEEEEEcCC--EEEE-EeCCCc------EEEEEcCCC
Q 016224          313 ---TSVVMSLLCWDQ--FLLS-CSLDKT------IKVWFATDS  343 (393)
Q Consensus       313 ---~~~v~~l~~~~~--~l~s-~s~dg~------i~iwd~~~~  343 (393)
                         ...+.++.|+++  ++++ ...||.      +++|+++..
T Consensus       237 ~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          237 SDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence               337899999843  3332 334433      899999764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.77  E-value=1.6e-17  Score=157.24  Aligned_cols=227  Identities=14%  Similarity=0.061  Sum_probs=157.2

Q ss_pred             CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEc
Q 016224          129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGV  208 (393)
Q Consensus       129 g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  208 (393)
                      +.+++|+....        .+...+..+++++++.+|++++.|+ +++|+.......  .....                
T Consensus        23 ~~vri~~~~~~--------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~--~~~~~----------------   75 (434)
T 2oit_A           23 KKVRIFDSPEE--------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ--NKPGD----------------   75 (434)
T ss_dssp             CEEECSCCCSS--------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC--CCTTC----------------
T ss_pred             eeEEecCCccc--------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh--ccccc----------------
Confidence            46788764321        2345678899999999999999998 899875421100  00000                


Q ss_pred             CCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEE----EEeCCCcEEEEEeccCC-----c--cccCceeecCceee
Q 016224          209 TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLF----AGTQDGAILAWKFNVTT-----N--CFEPAASLKGHSLA  275 (393)
Q Consensus       209 ~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~----~~~~dg~I~vwd~~~~~-----~--~~~~~~~~~~~~~~  275 (393)
                       ....+......   ....+...|.+++|+++  +|+    +++.|+.|++||+....     .  .......+.+|...
T Consensus        76 -~~~~~~~~~~~---~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~  151 (434)
T 2oit_A           76 -DPNKIVDKVQG---LLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGM  151 (434)
T ss_dssp             -CTTCEEECCCC---EEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGS
T ss_pred             -CcccccccCcc---ccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCc
Confidence             00000000000   11245678999999998  777    78889999999997641     0  01123455679999


Q ss_pred             EEEEEEcC---CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEE
Q 016224          276 VVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTY  350 (393)
Q Consensus       276 v~~l~~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~  350 (393)
                      |.+++|++   ++|++++.||+|++||+++++.+.....|...|.+++|+  +++|++|+.||+|++||++ +.....+.
T Consensus       152 V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~  230 (434)
T 2oit_A          152 VIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIP  230 (434)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEEC
T ss_pred             eEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccccccc
Confidence            99999974   589999999999999999988777777899999999998  7799999999999999997 44444443


Q ss_pred             eecC-----CccEEEEEeeeCCCCCcEEEE-EeCCCe------EEEEeCCce
Q 016224          351 THNE-----EHGVLALCGMPDSEGKPVLLC-SCNDNS------VRFYDLPSV  390 (393)
Q Consensus       351 ~~~~-----~~~v~~~~~~~~~~~~~~l~s-~s~dg~------I~iwd~~s~  390 (393)
                      .+..     ...+.++.|+++..   ++++ ...||.      +++|+++..
T Consensus       231 ~~~~~~~~~~~~v~~v~w~~~~~---~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          231 CPPFYESDHPVRVLDVLWIGTYV---FAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CCTTCCTTSCEEEEEEEEEETTE---EEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CCcccCCCCceeEEEEEEecCce---EEEEEccCCCccCCCCceEEEEeccC
Confidence            3321     23689999988644   5543 444433      899998753

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.76  E-value=6.3e-17  Score=159.22  Aligned_cols=258  Identities=7%  Similarity=-0.021  Sum_probs=181.4

Q ss_pred             ecceEEeeEecCc--EEEecC-CCeEEEEECCCCcEEEEEecCCc-CCEEEEEecCCCCEEEEEeC---CCcEEEEECCC
Q 016224          109 KTDILCRNWVQGN--CMYGEK-CKFLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLYSGSK---DETVRVWDCAS  181 (393)
Q Consensus       109 ~~~i~c~~~~~~~--~~~g~~-dg~i~vwd~~~~~~~~~~l~~h~-~~I~~i~~s~~~~~l~s~s~---dg~v~iwd~~~  181 (393)
                      ..+|+++.|++|+  +++++. ||+++||+++++ +.. .+..|. ..|..++|+|| +++++++.   +...+||.+..
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g-~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~   97 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG-ETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT   97 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT-EEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCC-CcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence            4589999999873  455555 999999999766 544 455555 68999999999 78888775   45556655432


Q ss_pred             ---CeEEEEEecC--CceEEEEeCCC--EEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCC----
Q 016224          182 ---GQCAGVINLG--GEVGCMISEGP--WIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQD----  248 (393)
Q Consensus       182 ---~~~~~~~~~~--~~~~~~~~~~~--~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~d----  248 (393)
                         +... .+...  .....+.++++  .++++.++.+.+||+.+++...+..+..  .+++|+||  .|++++.+    
T Consensus        98 ~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~  174 (582)
T 3o4h_A           98 SRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGR  174 (582)
T ss_dssp             TSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTE
T ss_pred             cCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCC
Confidence               2222 33222  22345566664  3444566667799999988765554444  78888887  77777766    


Q ss_pred             CcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCC--cEEEeeCCCcceeeEeccCccceEEEE----
Q 016224          249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDN--SIRVWNLETLQCIQTLTEHTSVVMSLL----  320 (393)
Q Consensus       249 g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~----  320 (393)
                      ..|++||+.++.     ...+..|...+..++|+  +++|+++..++  .|++||+.+++.. .+..|...+..+.    
T Consensus       175 ~~i~~~d~~~g~-----~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~  248 (582)
T 3o4h_A          175 VSLFTSNLSSGG-----LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAI  248 (582)
T ss_dssp             EEEEEEETTTCC-----CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEE
T ss_pred             eEEEEEcCCCCC-----ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccc
Confidence            779999988763     23566777778888886  66888888888  8999999998887 7777776666555    


Q ss_pred             ----Ec--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCe---EEEEeCCc
Q 016224          321 ----CW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNS---VRFYDLPS  389 (393)
Q Consensus       321 ----~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~---I~iwd~~s  389 (393)
                          |+  +.++++++.|++++||++  ++...   ..  ...+..++|+ ++.   ++++++.+..   |.+|++.+
T Consensus       249 ~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~--~~~v~~~~~s-dg~---~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          249 TWLGYLPDGRLAVVARREGRSAVFID--GERVE---AP--QGNHGRVVLW-RGK---LVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             EEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CC--SSEEEEEEEE-TTE---EEEEEEETTEEEEEEEETTCC
T ss_pred             cceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cC--CCceEEEEec-CCE---EEEEEcCCCCCCeEEEEcCCC
Confidence                77  668889999999999998  33222   11  2347778887 443   7888777744   77777654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.76  E-value=4.5e-16  Score=142.30  Aligned_cols=247  Identities=10%  Similarity=0.033  Sum_probs=164.7

Q ss_pred             EEEecCCCeEEEEECCCCcEEEEEecCCc-CCEEEEEecCCCCEEE-EEeCCCcEEEEECCCCeEEEEEecCC-------
Q 016224          122 CMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGVINLGG-------  192 (393)
Q Consensus       122 ~~~g~~dg~i~vwd~~~~~~~~~~l~~h~-~~I~~i~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~-------  192 (393)
                      +++++.++.|++||+.++ +.+..+..+. ..+..++|+|++++++ +...++.|.+||+.+++.+..+....       
T Consensus        14 ~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~   92 (349)
T 1jmx_B           14 MIVTNYPNNLHVVDVASD-TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGR   92 (349)
T ss_dssp             EEEEETTTEEEEEETTTT-EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEE
T ss_pred             EEEeCCCCeEEEEECCCC-cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccc
Confidence            346788999999999998 7777777554 2577899999998665 45568999999999999888777543       


Q ss_pred             --ceEEEEeCCCEEEEEc-------------CCeEEEEECCCCcee---eecCCCCcEEEEEEeCC-EEEEEeCCCcEEE
Q 016224          193 --EVGCMISEGPWIFIGV-------------TNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGND-LLFAGTQDGAILA  253 (393)
Q Consensus       193 --~~~~~~~~~~~l~~~~-------------~~~i~v~d~~~~~~~---~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~v  253 (393)
                        ....+.+++++++++.             ++.|.+||+.+++..   ....+...+.+++|+++ .+++++  +.|.+
T Consensus        93 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~~~--~~i~~  170 (349)
T 1jmx_B           93 SMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG--PDIYK  170 (349)
T ss_dssp             CSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES--SSEEE
T ss_pred             cccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCcEEEcc--CcEEE
Confidence              2344557888888764             489999999885432   33334446888999987 444443  34999


Q ss_pred             EEeccCCccccCceeecCce------------------------eeEEEEEEcC-------------CEEEEecCCCcEE
Q 016224          254 WKFNVTTNCFEPAASLKGHS------------------------LAVVSLVVGA-------------NKLYSGSMDNSIR  296 (393)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~------------------------~~v~~l~~~~-------------~~l~sg~~dg~i~  296 (393)
                      ||+.++..    ...+..+.                        .....+++..             .++.....++.++
T Consensus       171 ~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  246 (349)
T 1jmx_B          171 MDVKTGKY----TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH  246 (349)
T ss_dssp             ECTTTCCE----EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE
T ss_pred             EeCCCCce----eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEE
Confidence            99877632    22221110                        0122233321             0122333344555


Q ss_pred             EeeCCCcceeeEeccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEE
Q 016224          297 VWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVL  373 (393)
Q Consensus       297 iwd~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l  373 (393)
                      +|++.         .+...+..+.++   +++++++  ++.|.+||+.+++.+..+...   ..+..++|+|++.   +|
T Consensus       247 ~~~~~---------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~---~l  309 (349)
T 1jmx_B          247 TQEFA---------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD---HTYYCVAFDKKGD---KL  309 (349)
T ss_dssp             EEEEE---------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS---SCCCEEEECSSSS---CE
T ss_pred             ecccc---------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC---CCccceEECCCCC---EE
Confidence            55442         244456677765   4577777  889999999887665554432   2356788888754   67


Q ss_pred             EEEeCCCeEEEEeCCceee
Q 016224          374 LCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       374 ~s~s~dg~I~iwd~~s~~l  392 (393)
                      ++++.++.|++||+.++++
T Consensus       310 ~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          310 YLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             EEESBSSEEEEEETTTTEE
T ss_pred             EEecCCCeEEEEeccccce
Confidence            7788899999999998764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.76  E-value=9.2e-17  Score=162.48  Aligned_cols=231  Identities=8%  Similarity=-0.028  Sum_probs=168.7

Q ss_pred             cCCEEEEEecCCCCEEEEEeC-CC-----cEEEEECCCCeEEEEEecCC---------------------------ceEE
Q 016224          150 QKVVSGITLPSGSDKLYSGSK-DE-----TVRVWDCASGQCAGVINLGG---------------------------EVGC  196 (393)
Q Consensus       150 ~~~I~~i~~s~~~~~l~s~s~-dg-----~v~iwd~~~~~~~~~~~~~~---------------------------~~~~  196 (393)
                      ...|.+++|+|||++|++++. |+     .|++||+.+++....+....                           ....
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            457899999999999999998 88     99999999998877775431                           1234


Q ss_pred             EEeCCCEEEEEcCCeEEEEECCCC---ceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecC
Q 016224          197 MISEGPWIFIGVTNFVKAWNTQTN---TDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKG  271 (393)
Q Consensus       197 ~~~~~~~l~~~~~~~i~v~d~~~~---~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~  271 (393)
                      +.+++++|+++.++.|.+||+.++   ....+..+...+..++|+|+  .|+.++ ++.|++||+.++..    ......
T Consensus       116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~----~~~~~~  190 (741)
T 2ecf_A          116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ----MQLTAD  190 (741)
T ss_dssp             ECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE----EECCCC
T ss_pred             ECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE----EEeccC
Confidence            567999999887899999999998   66677788889999999999  677666 56999999987532    111122


Q ss_pred             ceee----------------EEEEEE--cCCEEEEecCCC---------------------------------cEEEeeC
Q 016224          272 HSLA----------------VVSLVV--GANKLYSGSMDN---------------------------------SIRVWNL  300 (393)
Q Consensus       272 ~~~~----------------v~~l~~--~~~~l~sg~~dg---------------------------------~i~iwd~  300 (393)
                      +...                +..+.|  ++++|++++.|+                                 .|.+||+
T Consensus       191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~  270 (741)
T 2ecf_A          191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP  270 (741)
T ss_dssp             CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred             CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence            2211                244555  467888887665                                 8899999


Q ss_pred             CC-cceeeEec--cCccceEEEEE-cCCEEEEEeC-----CCcEEEEEcCCCcceEEEEeecCCc--cEEEEEeeeCCCC
Q 016224          301 ET-LQCIQTLT--EHTSVVMSLLC-WDQFLLSCSL-----DKTIKVWFATDSGNLEVTYTHNEEH--GVLALCGMPDSEG  369 (393)
Q Consensus       301 ~~-~~~~~~~~--~~~~~v~~l~~-~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~  369 (393)
                      .+ ++......  .|...+..+.| ++++|++++.     +..|++||+.+++....+..+....  .+..+.|+|++. 
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-  349 (741)
T 2ecf_A          271 AEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS-  349 (741)
T ss_dssp             STTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC-
T ss_pred             CCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe-
Confidence            98 77655443  36677777776 3567776653     5679999998877655544433210  234678887754 


Q ss_pred             CcEEEEEeCCCeEEEEeCC
Q 016224          370 KPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       370 ~~~l~s~s~dg~I~iwd~~  388 (393)
                        ++++++.||.++||.+.
T Consensus       350 --~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          350 --ILWSSERTGFQHLYRID  366 (741)
T ss_dssp             --EEEEECTTSSCEEEEEC
T ss_pred             --EEEEecCCCccEEEEEc
Confidence              89999999988888764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.76  E-value=1.7e-16  Score=166.44  Aligned_cols=234  Identities=10%  Similarity=0.037  Sum_probs=171.8

Q ss_pred             EecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC-CeEEEEEecCC--ceEEEEeCCCEEEEEcCCeEEEEECCCCc
Q 016224          145 QLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-GQCAGVINLGG--EVGCMISEGPWIFIGVTNFVKAWNTQTNT  221 (393)
Q Consensus       145 ~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~i~v~d~~~~~  221 (393)
                      .+.+|...+.++.|+++ .++++++.|+++.||.+.. +.....+....  ....+.++++.++.+.++.|.+|++....
T Consensus       198 ~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~  276 (1045)
T 1k32_A          198 KIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEK  276 (1045)
T ss_dssp             EEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCC
T ss_pred             ECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceE
Confidence            34567888889999988 6777888899999998653 33333333222  24566789998888889999999996555


Q ss_pred             eeeecC-----------CCCcEEEEEEe-CC--EEEEEeCCCcEEEEEeccCCccccCceeecCcee-eEEEEEEc-CCE
Q 016224          222 DLSLSG-----------PVGQVYAMAVG-ND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSL-AVVSLVVG-ANK  285 (393)
Q Consensus       222 ~~~~~~-----------~~~~v~~l~~~-~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~-~v~~l~~~-~~~  285 (393)
                      ...+..           +...+..++|+ |+  .|++++ ++.|.+|++..+.     ...+..|.. .+..++|+ ++.
T Consensus       277 l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~sdg~~  350 (1045)
T 1k32_A          277 IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-----VLKVPEPLRIRYVRRGGDTKVA  350 (1045)
T ss_dssp             EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-----EEECSCCSCEEEEEECSSSEEE
T ss_pred             eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-----eEEccCCCcceEEeeeEcCCCe
Confidence            444333           23468899999 98  666666 8899999987653     223445555 67777776 447


Q ss_pred             EEEecCCCcEE-EeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEE
Q 016224          286 LYSGSMDNSIR-VWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALC  362 (393)
Q Consensus       286 l~sg~~dg~i~-iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  362 (393)
                      |+.++.+..+. +||+.+++.. .+..|...+..++|+  +++|++++.++.|++||+.+++.......+.  ..+..++
T Consensus       351 l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~--~~v~~~~  427 (1045)
T 1k32_A          351 FIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE--AMITDFT  427 (1045)
T ss_dssp             EEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS--SCCCCEE
T ss_pred             EEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCC--CCccceE
Confidence            88888888888 9999877654 444787889999998  6799999999999999998776555443433  3467788


Q ss_pred             eeeCCCCCcEEEEEeCCC----------eEEEEeCCcee
Q 016224          363 GMPDSEGKPVLLCSCNDN----------SVRFYDLPSVI  391 (393)
Q Consensus       363 ~~~~~~~~~~l~s~s~dg----------~I~iwd~~s~~  391 (393)
                      |+|++.   +|++++.++          .|++||+.+++
T Consensus       428 ~SpDG~---~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          428 ISDNSR---FIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             ECTTSC---EEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             ECCCCC---eEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            988765   788777654          89999998765

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.75  E-value=1.6e-15  Score=138.99  Aligned_cols=232  Identities=13%  Similarity=0.155  Sum_probs=156.1

Q ss_pred             cceEEeeEecCc-EEEecC---CCeEEEEECCCCc-EEEEEecCCcCCEEEEEecCCCCEEEEEe-CCCcEEEEECC-CC
Q 016224          110 TDILCRNWVQGN-CMYGEK---CKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVWDCA-SG  182 (393)
Q Consensus       110 ~~i~c~~~~~~~-~~~g~~---dg~i~vwd~~~~~-~~~~~l~~h~~~I~~i~~s~~~~~l~s~s-~dg~v~iwd~~-~~  182 (393)
                      .....++|++++ +++++.   ++.|++|++.++. +.+..+..+...+..++|+|++++|++++ .++.|.+|++. ++
T Consensus        40 ~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g  119 (347)
T 3hfq_A           40 QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADG  119 (347)
T ss_dssp             SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTS
T ss_pred             CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCC
Confidence            355678898876 444433   6899999997662 34555566788899999999999999888 67999999996 33


Q ss_pred             --eEEEEEecCC----------ce--EEEEeCCCEEEEE-cCCeEEEEECC-CCceee---ec-CCCCcEEEEEEeCC--
Q 016224          183 --QCAGVINLGG----------EV--GCMISEGPWIFIG-VTNFVKAWNTQ-TNTDLS---LS-GPVGQVYAMAVGND--  240 (393)
Q Consensus       183 --~~~~~~~~~~----------~~--~~~~~~~~~l~~~-~~~~i~v~d~~-~~~~~~---~~-~~~~~v~~l~~~~~--  240 (393)
                        +.+..+....          .+  ..+.++++++++. .++.|.+|++. +++...   .. .....+..++|+|+  
T Consensus       120 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~  199 (347)
T 3hfq_A          120 ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQ  199 (347)
T ss_dssp             CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred             CeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCC
Confidence              3333333221          12  3445688855555 46799999998 454331   12 23346788999998  


Q ss_pred             EE-EEEeCCCcEEEEEeccCCccccCceeecCce------eeEEEEEEc--CCEE-EEecCCCcEEEeeCC---Ccceee
Q 016224          241 LL-FAGTQDGAILAWKFNVTTNCFEPAASLKGHS------LAVVSLVVG--ANKL-YSGSMDNSIRVWNLE---TLQCIQ  307 (393)
Q Consensus       241 ~l-~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~------~~v~~l~~~--~~~l-~sg~~dg~i~iwd~~---~~~~~~  307 (393)
                      ++ ++...++.|.+|++............+....      ..+..++++  +++| ++...++.|.+||+.   +.+.+.
T Consensus       200 ~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~  279 (347)
T 3hfq_A          200 YAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQ  279 (347)
T ss_dssp             EEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEE
T ss_pred             EEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeE
Confidence            44 4456789999999986322222222222211      346667765  5666 556678999999997   335566


Q ss_pred             EeccCccceEEEEEc--CCEEEEEeC-CCcEEEEEcC
Q 016224          308 TLTEHTSVVMSLLCW--DQFLLSCSL-DKTIKVWFAT  341 (393)
Q Consensus       308 ~~~~~~~~v~~l~~~--~~~l~s~s~-dg~i~iwd~~  341 (393)
                      .+..+...+..++|+  +++|++++. ++.|.+|++.
T Consensus       280 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          280 QISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            666666677888888  677877776 4899999554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.75  E-value=3.5e-17  Score=165.04  Aligned_cols=268  Identities=12%  Similarity=0.114  Sum_probs=178.7

Q ss_pred             EeeEecCc-EEEecCCCeEEEEECCCCcEEEEEecCCcC---CEEEEEecCCCCEEEEEeC---------CCcEEEEECC
Q 016224          114 CRNWVQGN-CMYGEKCKFLHSWTVGDGFKLLTQLEGHQK---VVSGITLPSGSDKLYSGSK---------DETVRVWDCA  180 (393)
Q Consensus       114 c~~~~~~~-~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~---~I~~i~~s~~~~~l~s~s~---------dg~v~iwd~~  180 (393)
                      ...|++++ ++..+.|+.|++||+.++ +....+.+|..   .|.+++|||||++|++++.         ++.|++||+.
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIVLYNIETG-QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEEEEESSSC-CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEEcCCCCEEEEEcCCC-cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            56788775 445667999999999998 66666665544   4899999999999999876         7899999999


Q ss_pred             CCeEE--EEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeec--CCCCcE-----------------EEEEEeC
Q 016224          181 SGQCA--GVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS--GPVGQV-----------------YAMAVGN  239 (393)
Q Consensus       181 ~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~--~~~~~v-----------------~~l~~~~  239 (393)
                      +++.+  ..+........+.++|+.|+.+.++.|++|++.+++...+.  ++...|                 .++.|+|
T Consensus        99 ~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP  178 (719)
T 1z68_A           99 NGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP  178 (719)
T ss_dssp             TTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT
T ss_pred             CCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC
Confidence            98873  22222223356678999999888999999999988766432  333323                 4899999


Q ss_pred             C--EEEEEeCCC----------------------------------cEEEEEeccCCcc----ccCceeecCceeeEEEE
Q 016224          240 D--LLFAGTQDG----------------------------------AILAWKFNVTTNC----FEPAASLKGHSLAVVSL  279 (393)
Q Consensus       240 ~--~l~~~~~dg----------------------------------~I~vwd~~~~~~~----~~~~~~~~~~~~~v~~l  279 (393)
                      |  .|++++.|.                                  .|++||+.++...    ......+.+|...+..+
T Consensus       179 DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (719)
T 1z68_A          179 NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWL  258 (719)
T ss_dssp             TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEE
T ss_pred             CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEe
Confidence            8  777776542                                  7889998875320    00002244678888888


Q ss_pred             EEcCC--EEEEecCC----CcEEEee----CCCcceeeEe----ccCccceE-----EEEEc--CCEEE--EEeCCC--c
Q 016224          280 VVGAN--KLYSGSMD----NSIRVWN----LETLQCIQTL----TEHTSVVM-----SLLCW--DQFLL--SCSLDK--T  334 (393)
Q Consensus       280 ~~~~~--~l~sg~~d----g~i~iwd----~~~~~~~~~~----~~~~~~v~-----~l~~~--~~~l~--s~s~dg--~  334 (393)
                      +|+++  ++++....    ..|.+||    +.++++...+    ..|...+.     .+.|+  ++.|+  +...++  .
T Consensus       259 ~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~  338 (719)
T 1z68_A          259 TWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKH  338 (719)
T ss_dssp             EESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEE
T ss_pred             EEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceE
Confidence            88744  45553322    3488999    8888776665    35666665     67777  55433  454566  4


Q ss_pred             EEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeC----CCeEEEEeCC
Q 016224          335 IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN----DNSVRFYDLP  388 (393)
Q Consensus       335 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~----dg~I~iwd~~  388 (393)
                      |.+||+..++ ...+..+  ...+..+.+. +  ++.+++++..    ++.+++|.+.
T Consensus       339 l~~~~~~~~~-~~~lt~~--~~~v~~~~~~-d--~~~i~~~~~~~~~~~~~~~l~~~~  390 (719)
T 1z68_A          339 IHYIKDTVEN-AIQITSG--KWEAINIFRV-T--QDSLFYSSNEFEEYPGRRNIYRIS  390 (719)
T ss_dssp             EEEESSCSTT-CEECSCS--SSCEEEEEEE-C--SSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             EEEEECCCCc-eEecccC--ceEEEEEEEE-e--CCEEEEEEecCCCCCceEEEEEEe
Confidence            6666765544 3333322  2235666665 3  3334555544    4888999875

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.73  E-value=2.8e-16  Score=142.89  Aligned_cols=232  Identities=10%  Similarity=0.051  Sum_probs=164.1

Q ss_pred             eEEeeEecCc--E-EEecCCCeEEEEECCCCcEEEEEecC-C----cCCEEEEEecCCCCEEEEEe------------CC
Q 016224          112 ILCRNWVQGN--C-MYGEKCKFLHSWTVGDGFKLLTQLEG-H----QKVVSGITLPSGSDKLYSGS------------KD  171 (393)
Q Consensus       112 i~c~~~~~~~--~-~~g~~dg~i~vwd~~~~~~~~~~l~~-h----~~~I~~i~~s~~~~~l~s~s------------~d  171 (393)
                      +.++.|++++  + +++..++.|.+||+.++ +.+..+.. +    ...+..++|+|++++|++++            .+
T Consensus        36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTG-ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEETTTC-CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             ccceEEcCCCCEEEEEeCCCCeEEEEECCCC-CeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            5678888774  3 34667889999999988 66665553 2    23577899999999999886            67


Q ss_pred             CcEEEEECCCCeEEEEEecCCce--EEEEeCCCEEEEEcCCeEEEEECCCCceee-ecCCCCcEEEEEEeCC--EEEEEe
Q 016224          172 ETVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIGVTNFVKAWNTQTNTDLS-LSGPVGQVYAMAVGND--LLFAGT  246 (393)
Q Consensus       172 g~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~-~~~~~~~v~~l~~~~~--~l~~~~  246 (393)
                      +.|.+||+.+++.+..+.....+  ..+.+++++++++ ++.|.+||+.+++... +..+. ....+.|+++  .+++.+
T Consensus       115 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~  192 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQS-WEAETYAQPDVLAVWNQH  192 (337)
T ss_dssp             CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTT-TTTTTBCCCBCCCCCCCC
T ss_pred             ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeeccc-cCCCceeCCCccEEeeec
Confidence            99999999999988888765443  3455688877777 7899999999988763 22222 0012245555  333322


Q ss_pred             -CCC-----------------------cEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeC
Q 016224          247 -QDG-----------------------AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNL  300 (393)
Q Consensus       247 -~dg-----------------------~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~  300 (393)
                       .++                       .|.+||+.+...  . ...+..+...+..++++  +++++++  ++.|.+||+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~  267 (337)
T 1pby_B          193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM--A-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDL  267 (337)
T ss_dssp             TTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE--E-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEET
T ss_pred             cCCCceeeeeeccccccccccccccccceEEEeCCCCCc--e-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEEC
Confidence             222                       468899887642  1 22333444556667775  5677777  799999999


Q ss_pred             CCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEee
Q 016224          301 ETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTH  352 (393)
Q Consensus       301 ~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  352 (393)
                      .+++.+..+..+ ..+.+++|+  +++|++++.++.|.+||+.+++.+..+...
T Consensus       268 ~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          268 EKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             TTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             CCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            999988887644 356778887  678888889999999999888776666544

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.72  E-value=1.3e-15  Score=135.50  Aligned_cols=216  Identities=10%  Similarity=0.099  Sum_probs=152.5

Q ss_pred             EEeCCCcEEEEECCCCeEEEEEecCCceEE--EEeCCCEEEEEcCCeEEEEECCC-Cceeeec-CC-CCcEEEEEEeCC-
Q 016224          167 SGSKDETVRVWDCASGQCAGVINLGGEVGC--MISEGPWIFIGVTNFVKAWNTQT-NTDLSLS-GP-VGQVYAMAVGND-  240 (393)
Q Consensus       167 s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~i~v~d~~~-~~~~~~~-~~-~~~v~~l~~~~~-  240 (393)
                      +++.|++|++||+.+++......+...+..  +.+++++++++.++.|.+||+.+ ++...+. .+ ...+.+++|+|+ 
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg   96 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG   96 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred             CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence            346789999999999988877766655544  44789999999899999999998 7766443 33 367889999998 


Q ss_pred             -EEEEEe--CCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEE-EecCCCcEEEeeCCC-cceeeEeccCc
Q 016224          241 -LLFAGT--QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLY-SGSMDNSIRVWNLET-LQCIQTLTEHT  313 (393)
Q Consensus       241 -~l~~~~--~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~-sg~~dg~i~iwd~~~-~~~~~~~~~~~  313 (393)
                       +|++++  .++.+.+|.+.....  . ...+..+. .+..+.|+  +++|+ ++..++.++||++.. ......+..+.
T Consensus        97 ~~l~~~~~~~~~~~~l~~~~~~~~--~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  172 (297)
T 2ojh_A           97 ALYAISDKVEFGKSAIYLLPSTGG--T-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE  172 (297)
T ss_dssp             SEEEEEECTTTSSCEEEEEETTCC--C-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS
T ss_pred             CEEEEEEeCCCCcceEEEEECCCC--c-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC
Confidence             777777  445666666654322  1 22333222 36666775  55665 788899999998632 33446667788


Q ss_pred             cceEEEEEc--CCEEEEEe-CCCcEEEEEcC-CCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC----------
Q 016224          314 SVVMSLLCW--DQFLLSCS-LDKTIKVWFAT-DSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND----------  379 (393)
Q Consensus       314 ~~v~~l~~~--~~~l~s~s-~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d----------  379 (393)
                      ..+.++.|+  +++|+.++ .++.++||++. .......+..+.  ..+..+.|+|++.   +|++++.+          
T Consensus       173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~---~l~~~~~~~~~~~~~~~~  247 (297)
T 2ojh_A          173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA--YGDWFPHPSPSGD---KVVFVSYDADVFDHPRDL  247 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS--EEEEEEEECTTSS---EEEEEEEETTCCSCCSSE
T ss_pred             CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCC--cccCCeEECCCCC---EEEEEEcCCCCCcccccC
Confidence            889999998  56676655 58999999986 444444443333  3577888888765   78777765          


Q ss_pred             -CeEEEEeCCcee
Q 016224          380 -NSVRFYDLPSVI  391 (393)
Q Consensus       380 -g~I~iwd~~s~~  391 (393)
                       +.|++||+.+++
T Consensus       248 ~~~l~~~d~~~~~  260 (297)
T 2ojh_A          248 DVRVQLMDMDGGN  260 (297)
T ss_dssp             EEEEEEEETTSCS
T ss_pred             ceEEEEEecCCCC
Confidence             569999998764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.70  E-value=9.5e-16  Score=150.78  Aligned_cols=224  Identities=8%  Similarity=-0.042  Sum_probs=150.7

Q ss_pred             cCCEEEEEecCCCCEEEEEeC-CCcEEEEECCCCeEEEEEecCC-ceEEEE--eCCCEEEEEc----CCeEEEE--EC--
Q 016224          150 QKVVSGITLPSGSDKLYSGSK-DETVRVWDCASGQCAGVINLGG-EVGCMI--SEGPWIFIGV----TNFVKAW--NT--  217 (393)
Q Consensus       150 ~~~I~~i~~s~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~-~~~~~~--~~~~~l~~~~----~~~i~v~--d~--  217 (393)
                      ..+|.+++|+|||++||+++. ||+++||++.+++..+...... .+....  ++ ++++++.    +....+|  +.  
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~   99 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR   99 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence            568999999999999999887 9999999997777655444442 333322  34 6666553    2445554  44  


Q ss_pred             CCCceeeecCC-CCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCC---
Q 016224          218 QTNTDLSLSGP-VGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD---  292 (393)
Q Consensus       218 ~~~~~~~~~~~-~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d---  292 (393)
                      ..... .+... ...+.++.++++ .+++...++.+.+||+.++..    .... .+...-..++++|++|++++.+   
T Consensus       100 ~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~----~~l~-~~~~~~~~~spDG~~la~~~~~~~~  173 (582)
T 3o4h_A          100 PGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL----RELA-RLPGFGFVSDIRGDLIAGLGFFGGG  173 (582)
T ss_dssp             TTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE----EEEE-EESSCEEEEEEETTEEEEEEEEETT
T ss_pred             CCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE----EEee-cCCCceEEECCCCCEEEEEEEcCCC
Confidence            33333 33222 222444444554 455555555666999987632    2222 2222344566789999988777   


Q ss_pred             -CcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCC--cEEEEEcCCCcceEEEEeecCCccEEEEE-----
Q 016224          293 -NSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDK--TIKVWFATDSGNLEVTYTHNEEHGVLALC-----  362 (393)
Q Consensus       293 -g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~-----  362 (393)
                       ..|++||+.+++.. .+..|...+..++|+  +++|+++..++  .|++||+.+++.. .+..+..  .+..+.     
T Consensus       174 ~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~--~~~~~~~~~~~  249 (582)
T 3o4h_A          174 RVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSK--DFSSYRPTAIT  249 (582)
T ss_dssp             EEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCS--HHHHHCCSEEE
T ss_pred             CeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCc--Chhhhhhcccc
Confidence             78999999988754 677888889999998  67888888888  8999999876654 3333222  233334     


Q ss_pred             ---eeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          363 ---GMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       363 ---~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                         |+|++   .++++++.|+.+++|++
T Consensus       250 ~~~~spdg---~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          250 WLGYLPDG---RLAVVARREGRSAVFID  274 (582)
T ss_dssp             EEEECTTS---CEEEEEEETTEEEEEET
T ss_pred             ceeEcCCC---cEEEEEEcCCcEEEEEE
Confidence               77775   48999999999999998

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.69  E-value=1.4e-14  Score=131.60  Aligned_cols=225  Identities=9%  Similarity=0.101  Sum_probs=149.3

Q ss_pred             EecCCCCE-EEEEeCCCcEEEEECCCCeEEEEEecCCce--EEEEeCCCEEEEE--cCCeEEEEECCCCce-e-eecCCC
Q 016224          157 TLPSGSDK-LYSGSKDETVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIG--VTNFVKAWNTQTNTD-L-SLSGPV  229 (393)
Q Consensus       157 ~~s~~~~~-l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~--~~~~i~v~d~~~~~~-~-~~~~~~  229 (393)
                      .|.+++++ +++.+.++.|.+||+.+++.+..+..+...  ..+.+++++++++  .++.|.+||..+++. . .+..+.
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~   83 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ   83 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence            45555555 677788999999999999988887754332  2233678866654  367999999999886 4 444455


Q ss_pred             CcEEEEEEeCC--EEEEEeCCC---cEEEEEeccCCccccCceeecCceeeEEEEEEc--CCE-EEEecCCCc-EEEeeC
Q 016224          230 GQVYAMAVGND--LLFAGTQDG---AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANK-LYSGSMDNS-IRVWNL  300 (393)
Q Consensus       230 ~~v~~l~~~~~--~l~~~~~dg---~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~-l~sg~~dg~-i~iwd~  300 (393)
                      ....+++|+|+  +++++..++   .|.+||+.+..    ....+..+ .....++++  +++ +++...++. |.+|++
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~----~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~  158 (331)
T 3u4y_A           84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK----FISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKI  158 (331)
T ss_dssp             SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE----EEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred             CCccceEECCCCCEEEEecCCCCcccEEEEECCCCC----eEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEE
Confidence            55545999988  666555553   89999998763    33333322 234667775  444 455566688 999998


Q ss_pred             CCcceee----EeccCccceEEEEEc--CCEE-EEEeCCCcEEEEEcCCCcc---eEEEEeecCCccEEEEEeeeCCCCC
Q 016224          301 ETLQCIQ----TLTEHTSVVMSLLCW--DQFL-LSCSLDKTIKVWFATDSGN---LEVTYTHNEEHGVLALCGMPDSEGK  370 (393)
Q Consensus       301 ~~~~~~~----~~~~~~~~v~~l~~~--~~~l-~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~  370 (393)
                      .....+.    ...........+.++  ++++ +++..++.|.+||+.+++.   +..+..   ...+..++|+|++.  
T Consensus       159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~~~~~~~spdg~--  233 (331)
T 3u4y_A          159 DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT---NNLPGTIVVSRDGS--  233 (331)
T ss_dssp             CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC---SSCCCCEEECTTSS--
T ss_pred             CCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC---CCCCceEEECCCCC--
Confidence            7533321    111234456788887  5655 4555689999999988776   444432   34466788887654  


Q ss_pred             cEEEEE-eCCCeEEEEeCCceee
Q 016224          371 PVLLCS-CNDNSVRFYDLPSVII  392 (393)
Q Consensus       371 ~~l~s~-s~dg~I~iwd~~s~~l  392 (393)
                       +|+.+ ..++.|.+||+.++++
T Consensus       234 -~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          234 -TVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             -EEEEECSSEEEEEEEETTTTEE
T ss_pred             -EEEEEEcCCCEEEEEECCCCce
Confidence             56555 4578899999998765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.69  E-value=2.6e-14  Score=131.91  Aligned_cols=252  Identities=11%  Similarity=0.104  Sum_probs=169.8

Q ss_pred             CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC----------CCcEEEEECCCCeEEEEEecC-----
Q 016224          127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK----------DETVRVWDCASGQCAGVINLG-----  191 (393)
Q Consensus       127 ~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~----------dg~v~iwd~~~~~~~~~~~~~-----  191 (393)
                      .|+.|++||..++ +.+.++..+..+  .++|+||+++|+++..          +++|.+||..+++.+..+...     
T Consensus        29 ~d~~v~v~D~~t~-~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~  105 (361)
T 2oiz_A           29 TESRVHVYDYTNG-KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ  105 (361)
T ss_dssp             GGCEEEEEETTTC-CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred             ccCeEEEEECCCC-eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence            4789999999988 778888877666  8999999999999863          678999999999998888753     


Q ss_pred             ----CceEEEEeCCCEEEEEc---CCeEEEEECCCCceeee-cCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCC
Q 016224          192 ----GEVGCMISEGPWIFIGV---TNFVKAWNTQTNTDLSL-SGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTT  260 (393)
Q Consensus       192 ----~~~~~~~~~~~~l~~~~---~~~i~v~d~~~~~~~~~-~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~  260 (393)
                          .....+.+++++|+++.   ++.|.+||+.+++.+.. ...... ..+.+.|+   .+++.+.||.+.+|++....
T Consensus       106 ~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g  184 (361)
T 2oiz_A          106 GLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDG  184 (361)
T ss_dssp             BCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred             cCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence                12345667999998863   57999999999987744 333322 22445553   78888999999999986532


Q ss_pred             ccccCc---eeecCceeeE-EEEEEcCCEEEEecCCCcEEEeeCCCcce--eeEeccCc----------cceEEEEEc--
Q 016224          261 NCFEPA---ASLKGHSLAV-VSLVVGANKLYSGSMDNSIRVWNLETLQC--IQTLTEHT----------SVVMSLLCW--  322 (393)
Q Consensus       261 ~~~~~~---~~~~~~~~~v-~~l~~~~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~~~----------~~v~~l~~~--  322 (393)
                      ......   ..+.....++ .....++..++..+.++.|.++|+.....  +..+....          .....++++  
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d  264 (361)
T 2oiz_A          185 KVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA  264 (361)
T ss_dssp             SEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred             cEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence            110000   0111111111 11234466666677889999999875432  22221100          000113444  


Q ss_pred             CCEEEEEeC-----------CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          323 DQFLLSCSL-----------DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       323 ~~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      ++.++++..           .+.|.+||+.+.+.+..+..+.    ...++++|++.   +|++++. +.|.+||+.++
T Consensus       265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~----p~~ia~spdg~---~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD----ALSMTIDQQRN---LMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT----CCEEEEETTTT---EEEEECS-SCEEEEECSSS
T ss_pred             CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC----eeEEEECCCCC---EEEEeCC-CeEEEEECCCC
Confidence            566655432           3489999999887776665543    77888888765   7888876 99999999998

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.69  E-value=1.3e-14  Score=134.23  Aligned_cols=255  Identities=10%  Similarity=0.112  Sum_probs=159.4

Q ss_pred             CeEEEEEC--CCCcEE--EEEec-CCcCCEEEEEecCCCCEEEEEeCCCcEEEEECC-CCeEEEEEec--CCce--EEEE
Q 016224          129 KFLHSWTV--GDGFKL--LTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA-SGQCAGVINL--GGEV--GCMI  198 (393)
Q Consensus       129 g~i~vwd~--~~~~~~--~~~l~-~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~-~~~~~~~~~~--~~~~--~~~~  198 (393)
                      +.|.+|++  .++ ++  +.... .+...+..++|+|++++|++++.+ .|.+|++. +++.......  ....  ..+.
T Consensus        14 ~~i~~~~~d~~~g-~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~s   91 (365)
T 1jof_A           14 GAIFTVQFDDEKL-TCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDAD   91 (365)
T ss_dssp             CEEEEEEEETTTT-EEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTT
T ss_pred             CcEEEEEEECCCC-CEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEEC
Confidence            56777765  455 33  22221 244568889999999999999988 99999997 7876544332  1211  2234


Q ss_pred             eCCCE--EEEE--------------cCCeEEEEECCC-Ccee-eec----CCCCcEEEEEEeCC--EEEEEe-CCCcEEE
Q 016224          199 SEGPW--IFIG--------------VTNFVKAWNTQT-NTDL-SLS----GPVGQVYAMAVGND--LLFAGT-QDGAILA  253 (393)
Q Consensus       199 ~~~~~--l~~~--------------~~~~i~v~d~~~-~~~~-~~~----~~~~~v~~l~~~~~--~l~~~~-~dg~I~v  253 (393)
                      ++++.  ++++              .++.+.+|++.. ++.. .+.    .+...+.+++|+|+  +|+++. .++.|.+
T Consensus        92 pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~  171 (365)
T 1jof_A           92 TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWT  171 (365)
T ss_dssp             SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEE
Confidence            57774  3333              477999999974 5443 222    24567999999998  666655 4689999


Q ss_pred             EEec-cCCccccCceeec--CceeeEEEEEEc--CCEEEEec-CCCcEEEeeCC--Cccee---eE---ecc----Ccc-
Q 016224          254 WKFN-VTTNCFEPAASLK--GHSLAVVSLVVG--ANKLYSGS-MDNSIRVWNLE--TLQCI---QT---LTE----HTS-  314 (393)
Q Consensus       254 wd~~-~~~~~~~~~~~~~--~~~~~v~~l~~~--~~~l~sg~-~dg~i~iwd~~--~~~~~---~~---~~~----~~~-  314 (393)
                      ||+. ++..  .....+.  .|...+..++++  ++++++++ .++.|.+|++.  +++..   ..   +..    |.. 
T Consensus       172 ~~~~~~g~~--~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~  249 (365)
T 1jof_A          172 HRKLASGEV--ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPE  249 (365)
T ss_dssp             EEECTTSCE--EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTT
T ss_pred             EEECCCCCE--EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccc
Confidence            9998 4421  2222222  234456667775  56777666 47899999765  55542   12   221    222 


Q ss_pred             -----ceEEEE-Ec--CCEEEEEeCC-C-----cEEEEEcCCCcceEEEE--eecCCccEEEEEeee---CCCCCcEEEE
Q 016224          315 -----VVMSLL-CW--DQFLLSCSLD-K-----TIKVWFATDSGNLEVTY--THNEEHGVLALCGMP---DSEGKPVLLC  375 (393)
Q Consensus       315 -----~v~~l~-~~--~~~l~s~s~d-g-----~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~---~~~~~~~l~s  375 (393)
                           .+..++ ++  +++|+++..+ .     .|.+|++.....+..+.  ..........++++|   ++.   +|++
T Consensus       250 ~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~---~l~v  326 (365)
T 1jof_A          250 TGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE---WMAI  326 (365)
T ss_dssp             TSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT---EEEE
T ss_pred             cccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC---EEEE
Confidence                 477888 87  6677766543 2     89999996333333211  111122344677788   554   7888


Q ss_pred             EeC-CCeEEEEeCCce
Q 016224          376 SCN-DNSVRFYDLPSV  390 (393)
Q Consensus       376 ~s~-dg~I~iwd~~s~  390 (393)
                      ++. ++.|.+|++...
T Consensus       327 ~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          327 TDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ECSSSCEEEEEEEETT
T ss_pred             EEcCCCeEEEEEEchh
Confidence            876 489999998643

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.67  E-value=2.3e-14  Score=133.16  Aligned_cols=263  Identities=12%  Similarity=-0.006  Sum_probs=168.8

Q ss_pred             eeEecCc--EEEecC-CC--eEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 016224          115 RNWVQGN--CMYGEK-CK--FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN  189 (393)
Q Consensus       115 ~~~~~~~--~~~g~~-dg--~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  189 (393)
                      ..|++++  +++.+. ++  .|.+||+.++ +......+|...+..++|+||++.|+.++.++.|.+||+.+++....+.
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g-~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~  119 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ-VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ  119 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTC-EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCC-ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence            5788774  445554 66  5888999888 6666666676666677899999999999999999999999998877776


Q ss_pred             cCCceE---E--EEeCCCEEEEE-----------------------cCCeEEEEECCCCceeeecCCCCcEEEEEEeC-C
Q 016224          190 LGGEVG---C--MISEGPWIFIG-----------------------VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGN-D  240 (393)
Q Consensus       190 ~~~~~~---~--~~~~~~~l~~~-----------------------~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~-~  240 (393)
                      .+....   .  ..+++.+++..                       .+..|.+||+.+++...+..+...+..+.|+| +
T Consensus       120 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~d  199 (388)
T 3pe7_A          120 VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYD  199 (388)
T ss_dssp             CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTE
T ss_pred             chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCC
Confidence            655432   1  23577777642                       23579999999998877777778899999999 7


Q ss_pred             --EEEEEeCC------CcEEEEEeccCCccccCceeecCce--eeEEEEEEc--CCEEEEec-CCC----cEEEeeCCCc
Q 016224          241 --LLFAGTQD------GAILAWKFNVTTNCFEPAASLKGHS--LAVVSLVVG--ANKLYSGS-MDN----SIRVWNLETL  303 (393)
Q Consensus       241 --~l~~~~~d------g~I~vwd~~~~~~~~~~~~~~~~~~--~~v~~l~~~--~~~l~sg~-~dg----~i~iwd~~~~  303 (393)
                        .|+....+      ..|.++|+....     ...+..+.  ..+....|+  ++.|+..+ .++    .|++||+.++
T Consensus       200 g~~l~~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (388)
T 3pe7_A          200 DSTVAFCHEGPHDLVDARMWLINEDGTN-----MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL  274 (388)
T ss_dssp             EEEEEEEECSCTTTSSCSEEEEETTSCC-----CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred             CCEEEEEEecCCCCCcceEEEEeCCCCc-----eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence              56555543      367777766542     12222232  345566665  55554433 222    3999999988


Q ss_pred             ce--eeEeccCccce-----EEEEEcCCEEEEE---------eCCCcEEEEEcCCCcceEEEEeecCC---------ccE
Q 016224          304 QC--IQTLTEHTSVV-----MSLLCWDQFLLSC---------SLDKTIKVWFATDSGNLEVTYTHNEE---------HGV  358 (393)
Q Consensus       304 ~~--~~~~~~~~~~v-----~~l~~~~~~l~s~---------s~dg~i~iwd~~~~~~~~~~~~~~~~---------~~v  358 (393)
                      +.  +..+..+....     ..+..+++.|+..         ..+..|++||+.+++. ..+..+...         ..+
T Consensus       275 ~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~  353 (388)
T 3pe7_A          275 ENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTH  353 (388)
T ss_dssp             CEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTC
T ss_pred             ceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCC
Confidence            74  33333311110     1234446655543         4567899999976543 444433320         025


Q ss_pred             EEEEeeeCCCCCcEEE-EEeCCCeEEEEeC
Q 016224          359 LALCGMPDSEGKPVLL-CSCNDNSVRFYDL  387 (393)
Q Consensus       359 ~~~~~~~~~~~~~~l~-s~s~dg~I~iwd~  387 (393)
                      ..++|+|++.   .|+ ++..+|...||.+
T Consensus       354 ~~~~~spDg~---~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          354 PHPSFTPDDK---QILFTSDVHGKPALYLA  380 (388)
T ss_dssp             CCCEECTTSS---EEEEEECTTSSCEEEEE
T ss_pred             CCccCCCCCC---EEEEEecCCCceeEEEE
Confidence            6678887754   455 4555776666654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.66  E-value=1.6e-15  Score=152.87  Aligned_cols=226  Identities=9%  Similarity=0.016  Sum_probs=156.2

Q ss_pred             CEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc------eEEEEeCCCEEEEEcC----------CeEEEE
Q 016224          152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE------VGCMISEGPWIFIGVT----------NFVKAW  215 (393)
Q Consensus       152 ~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~----------~~i~v~  215 (393)
                      .+.+++|+|||+++++ +.||+|++||+.+++....+..+..      ...+.+++++|+.+.+          +.+.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4677899999998876 7899999999999988877765432      2455679998887643          689999


Q ss_pred             ECCCCceeeec---CCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCcee----------------
Q 016224          216 NTQTNTDLSLS---GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSL----------------  274 (393)
Q Consensus       216 d~~~~~~~~~~---~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~----------------  274 (393)
                      |+.+++...+.   .+...+..++|+|+  .|+.++. +.|++||+.++.    .......+..                
T Consensus        97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~----~~~~~~~~~~~~~~~g~~~~v~~ee~  171 (723)
T 1xfd_A           97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ----AIRVVSTGKEGVIYNGLSDWLYEEEI  171 (723)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC----CEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred             ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc----eEEEecCCCCCceECcccceeEEEEe
Confidence            99998764443   34445888999998  7777665 799999988763    2222222221                


Q ss_pred             --eEEEEEEc--CCEEEEecCCC----------------------------------cEEEeeCCCcceeeEeccC----
Q 016224          275 --AVVSLVVG--ANKLYSGSMDN----------------------------------SIRVWNLETLQCIQTLTEH----  312 (393)
Q Consensus       275 --~v~~l~~~--~~~l~sg~~dg----------------------------------~i~iwd~~~~~~~~~~~~~----  312 (393)
                        .+.+++|+  +++|++++.|+                                  .|++||+.+++....+..+    
T Consensus       172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~  251 (723)
T 1xfd_A          172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR  251 (723)
T ss_dssp             SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred             ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence              12456664  66888876543                                  7999999998876666654    


Q ss_pred             --ccceEEEEEc--CCEEEEEeC----CCcEEEEEcCCCcceEEEEeecCCccE----EEEEeeeCCCCCcEEEE-EeCC
Q 016224          313 --TSVVMSLLCW--DQFLLSCSL----DKTIKVWFATDSGNLEVTYTHNEEHGV----LALCGMPDSEGKPVLLC-SCND  379 (393)
Q Consensus       313 --~~~v~~l~~~--~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~~l~s-~s~d  379 (393)
                        ...+..+.|+  +++|++.+.    +..|++||+.+++....+..+.. ..+    ..+.|+|++.  .+++. +..+
T Consensus       252 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~~~~~~~~spdg~--~l~~~~~~~~  328 (723)
T 1xfd_A          252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESE-AWLHRQNEEPVFSKDGR--KFFFIRAIPQ  328 (723)
T ss_dssp             GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECS-SCCCCCCCCCEECTTSC--SEEEEEEECC
T ss_pred             CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccC-CEEeccCCCceEcCCCC--eEEEEEeccc
Confidence              6678899998  556766543    35799999987765544433221 112    2678888754  23333 5567


Q ss_pred             C------eEEEEe
Q 016224          380 N------SVRFYD  386 (393)
Q Consensus       380 g------~I~iwd  386 (393)
                      +      .|.+||
T Consensus       329 ~~~~~~~~l~~~d  341 (723)
T 1xfd_A          329 GGRGKFYHITVSS  341 (723)
T ss_dssp             SSSSCEEEEEEEC
T ss_pred             CCCcceeEEEEEe
Confidence            7      577777

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.63  E-value=7.1e-13  Score=117.90  Aligned_cols=231  Identities=13%  Similarity=0.194  Sum_probs=158.3

Q ss_pred             cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-------CceEEE-E--eCCCEEEEEc--CCeEEE
Q 016224          147 EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-------GEVGCM-I--SEGPWIFIGV--TNFVKA  214 (393)
Q Consensus       147 ~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-------~~~~~~-~--~~~~~l~~~~--~~~i~v  214 (393)
                      .+|-..+.+|+++++++++++...++.|.+||.. ++.+..+...       ..+..+ .  .++.++++..  ++.|.+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            3466789999999999988888889999999987 6666666431       122222 2  3555666653  789999


Q ss_pred             EECCCCcee-eec-CCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeec--CceeeEEEEEEc--CCEE
Q 016224          215 WNTQTNTDL-SLS-GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK--GHSLAVVSLVVG--ANKL  286 (393)
Q Consensus       215 ~d~~~~~~~-~~~-~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~--~~~~~v~~l~~~--~~~l  286 (393)
                      |+. +++.+ .+. .+...+..++++++  ++++...++.|.+||....     ....+.  .+...+..++++  ++++
T Consensus       105 ~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-----~~~~~~~~~~~~~p~~i~~~~~g~l~  178 (286)
T 1q7f_A          105 YNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-----VLHKFGCSKHLEFPNGVVVNDKQEIF  178 (286)
T ss_dssp             ECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-----EEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred             ECC-CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-----EEEEeCCCCccCCcEEEEECCCCCEE
Confidence            994 45544 332 34467899999887  6666667889999986432     222221  334456778876  4466


Q ss_pred             EEecCCCcEEEeeCCCcceeeEeccC--ccceEEEEEc--CCEEEEEeCCC-cEEEEEcCCCcceEEEEeecCCccEEEE
Q 016224          287 YSGSMDNSIRVWNLETLQCIQTLTEH--TSVVMSLLCW--DQFLLSCSLDK-TIKVWFATDSGNLEVTYTHNEEHGVLAL  361 (393)
Q Consensus       287 ~sg~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~l~~~--~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~  361 (393)
                      ++...++.|++||.. ++.+..+..+  ......++++  ++++++...++ .|.+||. +++.+..+..+........+
T Consensus       179 v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i  256 (286)
T 1q7f_A          179 ISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDV  256 (286)
T ss_dssp             EEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEE
T ss_pred             EEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeE
Confidence            666778999999974 5666666543  3567888887  56777777775 9999996 45555555544333446788


Q ss_pred             EeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          362 CGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       362 ~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      ++.|++.   ++++ +.|+.|++|++...
T Consensus       257 ~~~~~g~---l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          257 ALMDDGS---VVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEETTTE---EEEE-ETTTEEEEEECSCC
T ss_pred             EECCCCc---EEEE-CCCCeEEEEEcccc
Confidence            8877543   6666 67999999998653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.62  E-value=3.8e-13  Score=123.89  Aligned_cols=252  Identities=10%  Similarity=0.132  Sum_probs=157.7

Q ss_pred             eecceEEeeEecCc--EEEecCC----CeEEEEECCC--C-cEEEEEecCCcCCEEEEEecCCCCEEEEEe-CCCcEEEE
Q 016224          108 IKTDILCRNWVQGN--CMYGEKC----KFLHSWTVGD--G-FKLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVW  177 (393)
Q Consensus       108 ~~~~i~c~~~~~~~--~~~g~~d----g~i~vwd~~~--~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s-~dg~v~iw  177 (393)
                      +......++|++++  +++++.+    +.|.+|++..  + .+.+.....+......+++  ++++|++++ .++.|.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            34456778898874  4455554    7999998764  4 2344555556677888888  788887776 57899999


Q ss_pred             ECCCCeEEE----EEecCC-------------ceEEEEeCCCEEEEE--cCCeEEEEECCCCce--------------ee
Q 016224          178 DCASGQCAG----VINLGG-------------EVGCMISEGPWIFIG--VTNFVKAWNTQTNTD--------------LS  224 (393)
Q Consensus       178 d~~~~~~~~----~~~~~~-------------~~~~~~~~~~~l~~~--~~~~i~v~d~~~~~~--------------~~  224 (393)
                      ++.....+.    .+....             ....+.+++++++++  .++.|.+|++.....              ..
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            997543221    111111             124455788866655  467999998875431              12


Q ss_pred             ecCCCCcEEEEEEeCC--EEEEEe-CCCcEEEEEeccCCccccCceee---cCceeeEEEEEEc--CCEEEEecC--CCc
Q 016224          225 LSGPVGQVYAMAVGND--LLFAGT-QDGAILAWKFNVTTNCFEPAASL---KGHSLAVVSLVVG--ANKLYSGSM--DNS  294 (393)
Q Consensus       225 ~~~~~~~v~~l~~~~~--~l~~~~-~dg~I~vwd~~~~~~~~~~~~~~---~~~~~~v~~l~~~--~~~l~sg~~--dg~  294 (393)
                      .......+..++|+|+  ++++++ .++.|.+|++..+..  .....+   ..+......++++  +++|+++..  ++.
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~--~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~  283 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML--DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADG  283 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE--EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCE
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce--EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCE
Confidence            3344566889999998  566666 689999999985432  112222   2233344566664  667766555  589


Q ss_pred             EEEeeCC--Ccc--eeeEeccCccceEEEEEc--CCEEEEEe-CCCcEEEEEcCC-CcceEEEEeecCCccEEEEEee
Q 016224          295 IRVWNLE--TLQ--CIQTLTEHTSVVMSLLCW--DQFLLSCS-LDKTIKVWFATD-SGNLEVTYTHNEEHGVLALCGM  364 (393)
Q Consensus       295 i~iwd~~--~~~--~~~~~~~~~~~v~~l~~~--~~~l~s~s-~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~  364 (393)
                      |.+|++.  +++  .+..+.. ...+..++|+  +++|++++ .++.|.+|++.. ...+..+........+.++.|.
T Consensus       284 i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          284 VAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             EEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            9999985  444  4445544 4466788888  67788777 678999976642 2223322211122346666654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.60  E-value=1.2e-12  Score=119.59  Aligned_cols=235  Identities=6%  Similarity=0.030  Sum_probs=157.9

Q ss_pred             CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC---C--cEEEEECCCCeEEEEEecCCceEE--EEeC
Q 016224          128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD---E--TVRVWDCASGQCAGVINLGGEVGC--MISE  200 (393)
Q Consensus       128 dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d---g--~v~iwd~~~~~~~~~~~~~~~~~~--~~~~  200 (393)
                      ++.|.+||+.++ +.. .+    ..+..++|+|||++|+.++.+   +  .|.+|++.+++......... +..  +.++
T Consensus        42 ~~~l~~~d~~~~-~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspd  114 (347)
T 2gop_A           42 ENTIVIENLKNN-ARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNED  114 (347)
T ss_dssp             EEEEEEEETTTC-CEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTT
T ss_pred             cceEEEEeCCCC-ceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCC
Confidence            668999999887 332 33    568889999999999988754   2  48888998888766665544 333  3358


Q ss_pred             CCEEEEEc-C---------------------------CeEEEEECCCCce-eeecCCCCcEEEEEEeCC-EEEEEeCCC-
Q 016224          201 GPWIFIGV-T---------------------------NFVKAWNTQTNTD-LSLSGPVGQVYAMAVGND-LLFAGTQDG-  249 (393)
Q Consensus       201 ~~~l~~~~-~---------------------------~~i~v~d~~~~~~-~~~~~~~~~v~~l~~~~~-~l~~~~~dg-  249 (393)
                      ++.|+... +                           ..|.+|++.+++. ..+.. . .+..+.|+|+ +++++..+. 
T Consensus       115 g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~  192 (347)
T 2gop_A          115 SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREI  192 (347)
T ss_dssp             SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCS
T ss_pred             CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccc
Confidence            88776652 2                           4789999998877 44444 3 7888999998 666665542 


Q ss_pred             ------cEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCC--------CcEEEeeCCCcceeeEeccCccc
Q 016224          250 ------AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD--------NSIRVWNLETLQCIQTLTEHTSV  315 (393)
Q Consensus       250 ------~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~~~~~  315 (393)
                            ...+|.+..+    + ...+..+ ..+..++.++++|+..+.+        ..|.+||  +++.......+...
T Consensus       193 ~~~~~~~~~l~~~d~~----~-~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~  264 (347)
T 2gop_A          193 IPQYFKFWDIYIWEDG----K-EEKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRG  264 (347)
T ss_dssp             SCCSSCCEEEEEEETT----E-EEEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSE
T ss_pred             cccccccccEEEeCCC----c-eEEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcc
Confidence                  4455555422    1 1222223 4555567788877766643        4688888  66655555566677


Q ss_pred             eEE-EEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeE-EEEeCC
Q 016224          316 VMS-LLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSV-RFYDLP  388 (393)
Q Consensus       316 v~~-l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I-~iwd~~  388 (393)
                      +.. +.|++.++++++.++.++|| +.+ .....+..+  ...+..+.+++  .   ++++++.++.. .||.+.
T Consensus       265 ~~~~~~~sdg~~~~~~~~~~~~l~-~~~-g~~~~~~~~--~~~v~~~~~s~--~---~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          265 VGQAKIKDGKVYFTLFEEGSVNLY-IWD-GEIKPIAKG--RHWIMGFDVDE--I---VVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEEEETTEEEEEEEETTEEEEE-EES-SSEEEEECS--SSEEEEEEESS--S---EEEEEECSSSCCEEEEES
T ss_pred             cCCccEEcCcEEEEEecCCcEEEE-EcC-CceEEEecC--CCeEEeeeeeC--c---EEEEEcCCCChHHheEeC
Confidence            775 78873378888999999999 874 344444333  44577888876  2   77777777664 677654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.60  E-value=6.4e-14  Score=141.17  Aligned_cols=269  Identities=8%  Similarity=-0.017  Sum_probs=170.2

Q ss_pred             ceEEeeEecCc--EEEecC---------CCeEEEEECCCCcEEE--EEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEE
Q 016224          111 DILCRNWVQGN--CMYGEK---------CKFLHSWTVGDGFKLL--TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVW  177 (393)
Q Consensus       111 ~i~c~~~~~~~--~~~g~~---------dg~i~vwd~~~~~~~~--~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iw  177 (393)
                      .+.+.+|++++  +++++.         ++.|++||+.++ +.+  ..+   ...+..++|||||+.|+.+. |+.|++|
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g-~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~  135 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG-EFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLK  135 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT-EECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEE
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC-ccccceec---CcccccceECCCCCEEEEEE-CCeEEEE
Confidence            37899999885  344544         689999999988 442  222   35688999999999999986 7899999


Q ss_pred             ECCCCeEEEEEecCC---------------------ceEEEEeCCCEEEEE-cCC-------------------------
Q 016224          178 DCASGQCAGVINLGG---------------------EVGCMISEGPWIFIG-VTN-------------------------  210 (393)
Q Consensus       178 d~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~~~-~~~-------------------------  210 (393)
                      |+.+++.........                     ....+.++++.|+.+ .+.                         
T Consensus       136 ~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp  215 (719)
T 1z68_A          136 QRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYP  215 (719)
T ss_dssp             SSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECC
T ss_pred             eCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCC
Confidence            999887654332211                     135566899988875 331                         


Q ss_pred             ---------eEEEEECCCCcee---e------ecCCCCcEEEEEEeCC--EEEEEeCC----CcEEEEE----eccCCcc
Q 016224          211 ---------FVKAWNTQTNTDL---S------LSGPVGQVYAMAVGND--LLFAGTQD----GAILAWK----FNVTTNC  262 (393)
Q Consensus       211 ---------~i~v~d~~~~~~~---~------~~~~~~~v~~l~~~~~--~l~~~~~d----g~I~vwd----~~~~~~~  262 (393)
                               .|++||+.+++..   .      +..+...+..++|+||  ++++....    ..|.+||    +.++.. 
T Consensus       216 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~-  294 (719)
T 1z68_A          216 KAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC-  294 (719)
T ss_dssp             BTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC-
T ss_pred             CCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce-
Confidence                     7889999988642   2      2357788999999999  44443322    2488888    555422 


Q ss_pred             ccCceee----cCceeeEE-----EEEE--cCCEEE--EecCCC--cEEEeeCCCcceeeEeccCccceEEEEE-cCCEE
Q 016224          263 FEPAASL----KGHSLAVV-----SLVV--GANKLY--SGSMDN--SIRVWNLETLQCIQTLTEHTSVVMSLLC-WDQFL  326 (393)
Q Consensus       263 ~~~~~~~----~~~~~~v~-----~l~~--~~~~l~--sg~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~-~~~~l  326 (393)
                         ...+    ..|...+.     .+.|  +++.|+  +...++  .|.+||+.+++ ...+..+...+..+.+ .++.|
T Consensus       295 ---~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~d~~~i  370 (719)
T 1z68_A          295 ---PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRVTQDSL  370 (719)
T ss_dssp             ---CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEECSSEE
T ss_pred             ---EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEEeCCEE
Confidence               1222    23443333     3445  566433  344555  67778887766 4566656555655544 46666


Q ss_pred             EEEeCC-----CcEEEEEcCC-Cc--ceEEEEee-c-CCccEEEEEeeeCCCCCcEEEEEeCC--CeEEEEeCCcee
Q 016224          327 LSCSLD-----KTIKVWFATD-SG--NLEVTYTH-N-EEHGVLALCGMPDSEGKPVLLCSCND--NSVRFYDLPSVI  391 (393)
Q Consensus       327 ~s~s~d-----g~i~iwd~~~-~~--~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~l~s~s~d--g~I~iwd~~s~~  391 (393)
                      +..+.+     +.+++|.+.. ..  ....+... . ....+..+.|+|++.  .++++++.+  ..+.+||+.+++
T Consensus       371 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~--~l~~~~s~~~~p~~~l~d~~~g~  445 (719)
T 1z68_A          371 FYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAK--YYALVCYGPGIPISTLHDGRTDQ  445 (719)
T ss_dssp             EEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGS--SEEEEECCBSSCEEEEECSSSCC
T ss_pred             EEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCC--EEEEEcCCCCCCeEEEEECCCCC
Confidence            655554     8899998764 22  12222110 0 223466788888754  345455444  568899987765

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.59  E-value=5.3e-14  Score=142.29  Aligned_cols=231  Identities=8%  Similarity=0.038  Sum_probs=153.1

Q ss_pred             CEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc------e--EEEEeCCCEEEEEcC----------CeEE
Q 016224          152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE------V--GCMISEGPWIFIGVT----------NFVK  213 (393)
Q Consensus       152 ~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~------~--~~~~~~~~~l~~~~~----------~~i~  213 (393)
                      ...+++|+||+++|+++  |++|++||+.++++...+..+..      .  ..+.++++.|+.+.+          +.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            45578999999999886  99999999999998777765431      1  455689998887644          5778


Q ss_pred             EEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeE---------------
Q 016224          214 AWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAV---------------  276 (393)
Q Consensus       214 v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v---------------  276 (393)
                      +||+.+++...+..+...+...+|+||  .|+.+ .++.|++|++.++...   .....++...+               
T Consensus        96 ~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~---~lt~~g~~~~~~~g~~~~v~~ee~~~  171 (740)
T 4a5s_A           96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSY---RITWTGKEDIIYNGITDWVYEEEVFS  171 (740)
T ss_dssp             EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCE---ECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred             EEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceE---EEcCCCCccceecCcccccccchhcC
Confidence            999999998888888889999999998  66665 5789999998776421   11111221111               


Q ss_pred             ----EEEEEcCCEEEEecCCC------------------------------------cEEEeeCCC---cc--eeeEec-
Q 016224          277 ----VSLVVGANKLYSGSMDN------------------------------------SIRVWNLET---LQ--CIQTLT-  310 (393)
Q Consensus       277 ----~~l~~~~~~l~sg~~dg------------------------------------~i~iwd~~~---~~--~~~~~~-  310 (393)
                          ..+++++++|+..+.|.                                    .|++||+.+   ++  ....+. 
T Consensus       172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~  251 (740)
T 4a5s_A          172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA  251 (740)
T ss_dssp             SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred             CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence                23344567777664221                                    588899988   73  223343 


Q ss_pred             -----cCccceEEEEEc--CCEEEEEeC----CCcEEEEEcCCCc------ceEEE--EeecCCcc---EEEEEeeeCCC
Q 016224          311 -----EHTSVVMSLLCW--DQFLLSCSL----DKTIKVWFATDSG------NLEVT--YTHNEEHG---VLALCGMPDSE  368 (393)
Q Consensus       311 -----~~~~~v~~l~~~--~~~l~s~s~----dg~i~iwd~~~~~------~~~~~--~~~~~~~~---v~~~~~~~~~~  368 (393)
                           +|...+..+.|+  ++.++....    +..|.+||+.+++      ....+  ..+..-..   .....|+|++.
T Consensus       252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~  331 (740)
T 4a5s_A          252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGN  331 (740)
T ss_dssp             CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred             CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCC
Confidence                 377788999998  555554432    3479999998776      11222  22221111   23567887754


Q ss_pred             CCcEEE-EEeC-C--CeEEEEeCCcee
Q 016224          369 GKPVLL-CSCN-D--NSVRFYDLPSVI  391 (393)
Q Consensus       369 ~~~~l~-s~s~-d--g~I~iwd~~s~~  391 (393)
                         .|+ ..+. +  ..|++|++.+++
T Consensus       332 ---~l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          332 ---SFYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             ---EEEEEEECTTSCEEEEEEETTCSS
T ss_pred             ---EEEEEEEcCCCceEEEEEECCCCc
Confidence               554 5543 4  458888887653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.58  E-value=6.1e-13  Score=123.67  Aligned_cols=266  Identities=10%  Similarity=0.010  Sum_probs=159.3

Q ss_pred             eEEeeEecCc--EEEec-C--CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224          112 ILCRNWVQGN--CMYGE-K--CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG  186 (393)
Q Consensus       112 i~c~~~~~~~--~~~g~-~--dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  186 (393)
                      +...+|++++  +++.. .  +..|.+||+.++ +......++......+.|+||+++|+.++.++.|.+||+.+++...
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~  116 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ-QAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV  116 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT-EEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCC-cEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence            4566788764  33332 2  347899999887 5443333333223347899999999999999999999999988766


Q ss_pred             EEecCCceEE----------------------EEeCCCEEEE------EcCCeEEEEECCCCceeeecCCCCcEEEEEEe
Q 016224          187 VINLGGEVGC----------------------MISEGPWIFI------GVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVG  238 (393)
Q Consensus       187 ~~~~~~~~~~----------------------~~~~~~~l~~------~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~  238 (393)
                      ....+.....                      +.++++.++.      ..+..|.+||+.+++...+..+...+..+.|+
T Consensus       117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~s  196 (396)
T 3c5m_A          117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR  196 (396)
T ss_dssp             EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE
T ss_pred             EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceEC
Confidence            6654433110                      0122332222      23448999999998877666677789999999


Q ss_pred             C-C--EEEEEeCC------CcEEEEEeccCCccccCceeecCc--eeeEEEEEEc--CCEEEEecCC-----CcEEEeeC
Q 016224          239 N-D--LLFAGTQD------GAILAWKFNVTTNCFEPAASLKGH--SLAVVSLVVG--ANKLYSGSMD-----NSIRVWNL  300 (393)
Q Consensus       239 ~-~--~l~~~~~d------g~I~vwd~~~~~~~~~~~~~~~~~--~~~v~~l~~~--~~~l~sg~~d-----g~i~iwd~  300 (393)
                      | +  .|+..+.+      ..|.+||+.....     ..+..+  ...+..+.|+  +++|+..+.+     +.|++||+
T Consensus       197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  271 (396)
T 3c5m_A          197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-----RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP  271 (396)
T ss_dssp             TTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-----EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT
T ss_pred             CCCCCEEEEEecCCCCCCCceEEEEECCCCce-----eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEEC
Confidence            9 5  45555443      3588888765421     122222  2346666665  5666655433     44999999


Q ss_pred             CCcceeeEeccCccceEEEEE---cCCEEEEEe----------------CCCcEEEEEcCCCcceEEEEeecCCc-----
Q 016224          301 ETLQCIQTLTEHTSVVMSLLC---WDQFLLSCS----------------LDKTIKVWFATDSGNLEVTYTHNEEH-----  356 (393)
Q Consensus       301 ~~~~~~~~~~~~~~~v~~l~~---~~~~l~s~s----------------~dg~i~iwd~~~~~~~~~~~~~~~~~-----  356 (393)
                      .+++.........  .. +.|   +++++++++                .+..|.+||+.++.. ..+..+....     
T Consensus       272 ~~g~~~~l~~~~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~  347 (396)
T 3c5m_A          272 ETLENEEVMVMPP--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDG  347 (396)
T ss_dssp             TTCCEEEEEECCS--EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTT
T ss_pred             CCCCeEEeeeCCC--CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEccCCCCccccccc
Confidence            8876543322111  12 455   456777654                347899999976654 3333332210     


Q ss_pred             ----cEEEEEeeeCCCCCcEEEEEe-CCCeEEEE--eCCce
Q 016224          357 ----GVLALCGMPDSEGKPVLLCSC-NDNSVRFY--DLPSV  390 (393)
Q Consensus       357 ----~v~~~~~~~~~~~~~~l~s~s-~dg~I~iw--d~~s~  390 (393)
                          ....+.|+|++.   .|+..+ .++...||  ++.++
T Consensus       348 ~~~~~~~~~~~s~dg~---~l~~~s~~~~~~~l~~~~~~~~  385 (396)
T 3c5m_A          348 DRQITHPHPSFTPNDD---GVLFTSDFEGVPAIYIADVPES  385 (396)
T ss_dssp             BSSTTCCCCEECTTSS---EEEEEECTTSSCEEEEEECCTT
T ss_pred             cccCCCCCceEccCCC---eEEEEecCCCCceEEEEEEccc
Confidence                134567777644   555554 45554444  44444

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.57  E-value=4.7e-13  Score=122.14  Aligned_cols=217  Identities=12%  Similarity=0.096  Sum_probs=142.7

Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--ce--EEEEeCCCEEEEE--cCCeEEEEECCCCcee-eecC
Q 016224          155 GITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG--EV--GCMISEGPWIFIG--VTNFVKAWNTQTNTDL-SLSG  227 (393)
Q Consensus       155 ~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~~--~~~~~~~~~l~~~--~~~~i~v~d~~~~~~~-~~~~  227 (393)
                      .+++++++.++++++.+++|.+||+.+++.+..+..+.  ..  ..+.++++.++++  .++.|.+||+.+++.. .+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            45678889999999999999999999999988887655  22  3445678766544  5679999999998876 3322


Q ss_pred             C------CCcEEEEEEeCC--EEEEEeCC------------CcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCE
Q 016224          228 P------VGQVYAMAVGND--LLFAGTQD------------GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANK  285 (393)
Q Consensus       228 ~------~~~v~~l~~~~~--~l~~~~~d------------g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~  285 (393)
                      .      ...+..++|+|+  +|++++.+            +.|.+||+.++... +....... ...+.+++++  ++ 
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~-~~~~~~~~~s~dg~-  160 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-KPVRTFPM-PRQVYLMRAADDGS-  160 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB-CCSEEEEC-CSSCCCEEECTTSC-
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc-ceeeeccC-CCcccceeECCCCc-
Confidence            2      223778899988  77777755            89999999875321 22233322 2245566664  56 


Q ss_pred             EEEecCCCcEEEeeCCCcceeeEeccCcc------------------------ceEEEEEcC-------------CEEEE
Q 016224          286 LYSGSMDNSIRVWNLETLQCIQTLTEHTS------------------------VVMSLLCWD-------------QFLLS  328 (393)
Q Consensus       286 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~------------------------~v~~l~~~~-------------~~l~s  328 (393)
                      +++++.  .|.+||+.+++.+..+..+..                        ....+.+..             .++..
T Consensus       161 l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  238 (349)
T 1jmx_B          161 LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  238 (349)
T ss_dssp             EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence            555543  499999999988877754320                        112233331             01112


Q ss_pred             EeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeee-CCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          329 CSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMP-DSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       329 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      ...++.+++|++           .........++++| ++.   +|+++  ++.|.+||+.++++
T Consensus       239 ~~~~~~~~~~~~-----------~~~~~~~~~~~~sp~dg~---~l~~~--~~~v~~~d~~~~~~  287 (349)
T 1jmx_B          239 DLKTGKTHTQEF-----------ADLTELYFTGLRSPKDPN---QIYGV--LNRLAKYDLKQRKL  287 (349)
T ss_dssp             ETTTCCEEEEEE-----------EECSSCEEEEEECSSCTT---EEEEE--ESEEEEEETTTTEE
T ss_pred             eccCCcEEeccc-----------ccCCCcceeeEecCCCCC---EEEEE--cCeEEEEECccCeE
Confidence            223344444443           12334577888887 655   77777  88999999998764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.56  E-value=7.6e-12  Score=113.81  Aligned_cols=232  Identities=14%  Similarity=0.105  Sum_probs=161.1

Q ss_pred             cCCEEEEEecCCCCEEEEEeCC------------------------CcEEEEECCCCeEEEEEecCC--ce--EEEEeCC
Q 016224          150 QKVVSGITLPSGSDKLYSGSKD------------------------ETVRVWDCASGQCAGVINLGG--EV--GCMISEG  201 (393)
Q Consensus       150 ~~~I~~i~~s~~~~~l~s~s~d------------------------g~v~iwd~~~~~~~~~~~~~~--~~--~~~~~~~  201 (393)
                      -..+.+|+++++++++++...+                        ++|.+||..+++.+..+....  .+  ..+.+++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3679999999999999888777                        479999999998877665321  22  2333578


Q ss_pred             CEEEEE-cCCeEEEEECCCCc--eeee---------cCCCCcEEEEEEeC-C--EEEEEe-CCCcEEEEEeccCCccccC
Q 016224          202 PWIFIG-VTNFVKAWNTQTNT--DLSL---------SGPVGQVYAMAVGN-D--LLFAGT-QDGAILAWKFNVTTNCFEP  265 (393)
Q Consensus       202 ~~l~~~-~~~~i~v~d~~~~~--~~~~---------~~~~~~v~~l~~~~-~--~l~~~~-~dg~I~vwd~~~~~~~~~~  265 (393)
                      .++++. .++.|++|+.....  ...+         ..+......+++++ +  ++++.+ .++.|++|+.. +    ..
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g----~~  177 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-G----KF  177 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-S----CE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-C----CE
Confidence            877776 46799999987652  2233         24455789999998 4  556654 58999999843 2    22


Q ss_pred             ceeec----------CceeeEEEEEEc---CCEEEEecCCCcEEEeeCCCcceeeEec--cCccceEEEEEcCCEEEEE-
Q 016224          266 AASLK----------GHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQCIQTLT--EHTSVVMSLLCWDQFLLSC-  329 (393)
Q Consensus       266 ~~~~~----------~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~l~s~-  329 (393)
                      +..+.          ++-.....++++   +.++++...++.|++||..+++.+.++.  .+...+..+++.+.+++.. 
T Consensus       178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~  257 (329)
T 3fvz_A          178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVN  257 (329)
T ss_dssp             EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEE
T ss_pred             EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeC
Confidence            22221          122335677775   3466777788999999999899888884  3555677787775443333 


Q ss_pred             -------eCCCcEEEEEcCCCcceEEEEe-ecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          330 -------SLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       330 -------s~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                             ..+..|++||+.+++.+..+.. .........+++.+++   .++++...++.|++|++..
T Consensus       258 g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG---~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG---TVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS---EEEEEESSSCCEEEEEEEE
T ss_pred             CCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC---CEEEEECCCCEEEEEeCCc
Confidence                   2345899999988776655431 1223447788887764   3888888999999999754

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.56  E-value=2e-12  Score=117.66  Aligned_cols=256  Identities=10%  Similarity=-0.042  Sum_probs=166.5

Q ss_pred             ecCCCeEEEEECCCCcEEEEEec------CCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEE-
Q 016224          125 GEKCKFLHSWTVGDGFKLLTQLE------GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM-  197 (393)
Q Consensus       125 g~~dg~i~vwd~~~~~~~~~~l~------~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~-  197 (393)
                      |+.++.|.+||.+++ +....+.      ........+.+. ++++.++...++.|.+||..+++.+.++........+ 
T Consensus        13 g~~~~~l~~~d~~t~-~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~   90 (328)
T 3dsm_A           13 QYSNATLSYYDPATC-EVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIH   90 (328)
T ss_dssp             TSCCBEEEEEETTTT-EEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEE
T ss_pred             CCCCceEEEEECCCC-EEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEE
Confidence            455899999999988 6554431      123456778875 3445555566799999999999998888654444333 


Q ss_pred             E-eCCCEEEEE-cCCeEEEEECCCCceeeecCCCC------cEEEEEEeCCEEEEEe--CCCcEEEEEeccCCccccCce
Q 016224          198 I-SEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVG------QVYAMAVGNDLLFAGT--QDGAILAWKFNVTTNCFEPAA  267 (393)
Q Consensus       198 ~-~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~------~v~~l~~~~~~l~~~~--~dg~I~vwd~~~~~~~~~~~~  267 (393)
                      . +++.+.++. .++.|.+||..+++.........      ....+++....|+++.  .++.|.++|+.+..    ...
T Consensus        91 ~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~----~~~  166 (328)
T 3dsm_A           91 FLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDK----VVD  166 (328)
T ss_dssp             EEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTE----EEE
T ss_pred             EeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCe----EEE
Confidence            3 566544444 58899999999988763222122      4556777666655555  48899999998763    222


Q ss_pred             eecCceeeEEEEEEc--CCEEEEecCC----------CcEEEeeCCCcceeeEeccC-ccceEEEEEc--CCEEEEEeCC
Q 016224          268 SLKGHSLAVVSLVVG--ANKLYSGSMD----------NSIRVWNLETLQCIQTLTEH-TSVVMSLLCW--DQFLLSCSLD  332 (393)
Q Consensus       268 ~~~~~~~~v~~l~~~--~~~l~sg~~d----------g~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~--~~~l~s~s~d  332 (393)
                      .+... .....+.++  +++++++..+          +.|.++|..+++.+..+... ......++++  +++|+++.. 
T Consensus       167 ~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-  244 (328)
T 3dsm_A          167 ELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-  244 (328)
T ss_dssp             EEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-
T ss_pred             EEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-
Confidence            22211 112344444  4555555544          78999999999888777543 2357888888  567777654 


Q ss_pred             CcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEE----eCCCeEEEEeCCceee
Q 016224          333 KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS----CNDNSVRFYDLPSVII  392 (393)
Q Consensus       333 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~----s~dg~I~iwd~~s~~l  392 (393)
                       .|.+||..+++................+++.|+  ++.++++.    ..++.|.+||.. +++
T Consensus       245 -~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~--~g~lyva~~~~y~~~~~V~v~d~~-g~~  304 (328)
T 3dsm_A          245 -DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPN--NGEVYVADAIDYQQQGIVYRYSPQ-GKL  304 (328)
T ss_dssp             -SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTT--TCCEEEEECTTSSSEEEEEEECTT-CCE
T ss_pred             -EEEEEECCCCceeeeeeecCCCCceEEEEEcCC--CCeEEEEcccccccCCEEEEECCC-CCE
Confidence             899999976654211111111234677888764  33366666    678999999987 653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.55  E-value=2.2e-13  Score=137.76  Aligned_cols=271  Identities=8%  Similarity=0.014  Sum_probs=167.9

Q ss_pred             ceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCC-----EEEEEecCCCCEEEEEeCC---------CcEEE
Q 016224          111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV-----VSGITLPSGSDKLYSGSKD---------ETVRV  176 (393)
Q Consensus       111 ~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~-----I~~i~~s~~~~~l~s~s~d---------g~v~i  176 (393)
                      ....+.|++++.++.+.|+.|++||+.++ +....+.+|...     ...++||||+++|+.++.+         +.+.+
T Consensus        18 ~~~~~~w~~dg~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~   96 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQENNILVFNAEYG-NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (740)
T ss_dssp             CCCCEEECSSSEEEEEETTEEEEEETTTC-CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             cccccEECCCCcEEEEcCCcEEEEECCCC-ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence            34578999886554434999999999998 666677877643     2447889999999999876         56679


Q ss_pred             EECCCCeEEEEEecCCce--EEEEeCCCEEEEEcCCeEEEEECCCCceeeec--CCCCcE-----------------EEE
Q 016224          177 WDCASGQCAGVINLGGEV--GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS--GPVGQV-----------------YAM  235 (393)
Q Consensus       177 wd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~--~~~~~v-----------------~~l  235 (393)
                      ||+.+++..........+  ..+.++|+.|+...++.|++|+..++....+.  ++...+                 ..+
T Consensus        97 ~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~  176 (740)
T 4a5s_A           97 YDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL  176 (740)
T ss_dssp             EETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred             EECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcce
Confidence            999999866433323333  34568999999889999999999988765432  333323                 348


Q ss_pred             EEeCC--EEEEEeCCC------------------------------------cEEEEEecc---CCccccCceeec----
Q 016224          236 AVGND--LLFAGTQDG------------------------------------AILAWKFNV---TTNCFEPAASLK----  270 (393)
Q Consensus       236 ~~~~~--~l~~~~~dg------------------------------------~I~vwd~~~---~~~~~~~~~~~~----  270 (393)
                      .|+||  .|+..+.|.                                    .|++||+.+   +...  ....+.    
T Consensus       177 ~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~--~~~~l~~~~~  254 (740)
T 4a5s_A          177 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA--TSIQITAPAS  254 (740)
T ss_dssp             EECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC--CEEEECCCHH
T ss_pred             EECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc--eEEEecCCcc
Confidence            89998  666654322                                    467777776   4210  111222    


Q ss_pred             --CceeeEEEEEEc--CCEEEEe----cCCCcEEEeeCCCcc----ee--eEe--ccCccceE-----EEEEc--CCEEE
Q 016224          271 --GHSLAVVSLVVG--ANKLYSG----SMDNSIRVWNLETLQ----CI--QTL--TEHTSVVM-----SLLCW--DQFLL  327 (393)
Q Consensus       271 --~~~~~v~~l~~~--~~~l~sg----~~dg~i~iwd~~~~~----~~--~~~--~~~~~~v~-----~l~~~--~~~l~  327 (393)
                        +|...+..++|+  ++.++..    ..+..|.+||+.+++    +.  ..+  ..|...+.     ...|+  ++.|+
T Consensus       255 ~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~  334 (740)
T 4a5s_A          255 MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFY  334 (740)
T ss_dssp             HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEE
T ss_pred             CCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEE
Confidence              366677777775  5544443    234479999999887    22  222  34554443     56676  56655


Q ss_pred             -EEeC-CC--cEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeC----CC--eEEEEeCCce
Q 016224          328 -SCSL-DK--TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN----DN--SVRFYDLPSV  390 (393)
Q Consensus       328 -s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~----dg--~I~iwd~~s~  390 (393)
                       ..+. +|  .|.+||+..+.. ..+...  .-.+..+.. ++  ++.+++++..    .+  .|+..++..+
T Consensus       335 ~~~s~~~G~~~l~~~~~~~~~~-~~lT~g--~~~v~~~~~-~d--~~~i~f~~~~~~~~~~~~~ly~v~~~g~  401 (740)
T 4a5s_A          335 KIISNEEGYRHICYFQIDKKDC-TFITKG--TWEVIGIEA-LT--SDYLYYISNEYKGMPGGRNLYKIQLIDY  401 (740)
T ss_dssp             EEEECTTSCEEEEEEETTCSSC-EESCCS--SSCEEEEEE-EC--SSEEEEEESCGGGCTTCBEEEEEETTEE
T ss_pred             EEEEcCCCceEEEEEECCCCce-EecccC--CEEEEEEEE-Ee--CCEEEEEEecCCCCCceeEEEEEECCCC
Confidence             5553 44  588888865443 333322  223444432 44  3445555554    23  4555555443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.54  E-value=9.3e-13  Score=121.68  Aligned_cols=230  Identities=10%  Similarity=0.035  Sum_probs=145.0

Q ss_pred             ceEEeeEecCc--EEEecCCCeEEEEECC-CCcEEEEEec--CCcCCEEEEEecCCCCE--EEEEe-------------C
Q 016224          111 DILCRNWVQGN--CMYGEKCKFLHSWTVG-DGFKLLTQLE--GHQKVVSGITLPSGSDK--LYSGS-------------K  170 (393)
Q Consensus       111 ~i~c~~~~~~~--~~~g~~dg~i~vwd~~-~~~~~~~~l~--~h~~~I~~i~~s~~~~~--l~s~s-------------~  170 (393)
                      .+..++|++++  +++++.+ .|.+|++. ++ ++.....  .+ +.+..++|+|++++  ++++.             .
T Consensus        41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g-~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPT-EIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBT-EEEEEEEEETT-EEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCcEEEECCCCCEEEEEccc-eEEEEEECCCC-CEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            45678888774  4456655 99999997 76 5543322  11 23556899999994  55553             6


Q ss_pred             CCcEEEEECC-CCeEEEEEe-----cCCceE--EEEeCCCEEEEE--cCCeEEEEECC-CCcee---eec--CCCCcEEE
Q 016224          171 DETVRVWDCA-SGQCAGVIN-----LGGEVG--CMISEGPWIFIG--VTNFVKAWNTQ-TNTDL---SLS--GPVGQVYA  234 (393)
Q Consensus       171 dg~v~iwd~~-~~~~~~~~~-----~~~~~~--~~~~~~~~l~~~--~~~~i~v~d~~-~~~~~---~~~--~~~~~v~~  234 (393)
                      ++++.+|++. +++....+.     ....+.  .+.+++++++++  .++.|.+|++. +++..   .+.  .+...+..
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~  197 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW  197 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence            8999999997 466554443     222333  344688888775  35699999998 66643   222  23567899


Q ss_pred             EEEeCC--EEEEEe-CCCcEEEEEeccCCcccc----Cceeec----Ccee------eEEEEE-Ec--CCEEEEecCC-C
Q 016224          235 MAVGND--LLFAGT-QDGAILAWKFNVTTNCFE----PAASLK----GHSL------AVVSLV-VG--ANKLYSGSMD-N  293 (393)
Q Consensus       235 l~~~~~--~l~~~~-~dg~I~vwd~~~~~~~~~----~~~~~~----~~~~------~v~~l~-~~--~~~l~sg~~d-g  293 (393)
                      ++|+|+  +|+++. .++.|.+|++........    .+..+.    +|..      .+..++ ++  +++|+++..+ .
T Consensus       198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~  277 (365)
T 1jof_A          198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK  277 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred             eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCC
Confidence            999998  666665 478999998864221111    011111    2221      466666 64  6677766543 2


Q ss_pred             -----cEEEeeCC-Ccceee---EeccCccceEE--EEE---cCCEEEEEeCC-CcEEEEEcCCC
Q 016224          294 -----SIRVWNLE-TLQCIQ---TLTEHTSVVMS--LLC---WDQFLLSCSLD-KTIKVWFATDS  343 (393)
Q Consensus       294 -----~i~iwd~~-~~~~~~---~~~~~~~~v~~--l~~---~~~~l~s~s~d-g~i~iwd~~~~  343 (393)
                           .|.+|++. +++...   .+..+......  +..   ++++|++++.+ +.|.+|++...
T Consensus       278 ~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          278 FELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence                 89999996 566543   23223322333  344   47899888864 89999998654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.53  E-value=1.3e-12  Score=120.48  Aligned_cols=245  Identities=10%  Similarity=0.036  Sum_probs=158.6

Q ss_pred             EeeEecCc--EEEec----------CCCeEEEEECCCCcEEEEEecCC------cCCEEEEEecCCCCEEEEEeC--CCc
Q 016224          114 CRNWVQGN--CMYGE----------KCKFLHSWTVGDGFKLLTQLEGH------QKVVSGITLPSGSDKLYSGSK--DET  173 (393)
Q Consensus       114 c~~~~~~~--~~~g~----------~dg~i~vwd~~~~~~~~~~l~~h------~~~I~~i~~s~~~~~l~s~s~--dg~  173 (393)
                      .+.+++++  ++++.          .++.|.+||..+. +.+.++...      ......++|+|++++|+++..  +++
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~-~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~  132 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL-TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATS  132 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC-CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC-cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCe
Confidence            77888874  33332          3678999999887 677766532      345667899999999998864  689


Q ss_pred             EEEEECCCCeEEEE-EecCCceEE-EEeCC--CEEEEEcCCeEEEEECCC-Ccee-e------ecCCCCcEEEEEEeC--
Q 016224          174 VRVWDCASGQCAGV-INLGGEVGC-MISEG--PWIFIGVTNFVKAWNTQT-NTDL-S------LSGPVGQVYAMAVGN--  239 (393)
Q Consensus       174 v~iwd~~~~~~~~~-~~~~~~~~~-~~~~~--~~l~~~~~~~i~v~d~~~-~~~~-~------~~~~~~~v~~l~~~~--  239 (393)
                      |.+||+.+++.+.. +........ +.+++  .+++.+.|+.+.+|+... ++.. .      +.....++ .+.+.+  
T Consensus       133 v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g  211 (361)
T 2oiz_A          133 IGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDK  211 (361)
T ss_dssp             EEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECS
T ss_pred             EEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccC
Confidence            99999999998887 665543222 23433  344456788888888765 4333 1      11111111 111222  


Q ss_pred             CEEEEEeCCCcEEEEEeccCCccccCceeec------------CceeeEEEEEEcCCEEEEecC-----------CCcEE
Q 016224          240 DLLFAGTQDGAILAWKFNVTTNCFEPAASLK------------GHSLAVVSLVVGANKLYSGSM-----------DNSIR  296 (393)
Q Consensus       240 ~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~------------~~~~~v~~l~~~~~~l~sg~~-----------dg~i~  296 (393)
                      ..++..+.++.|.++|+......  ....+.            ........+..++++++++..           .+.|.
T Consensus       212 ~~~~~~~~~~~v~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~  289 (361)
T 2oiz_A          212 DKAHFVSYYGNVYSADFSGDEVK--VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIW  289 (361)
T ss_dssp             SEEEEEBTTSEEEEEECSSSSCE--EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEE
T ss_pred             CEEEEEeCCCeEEEEEecCCCce--ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEE
Confidence            35566678899999998654321  111100            011112345556676665432           35899


Q ss_pred             EeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCC--cceEEEEeecCCccEEEEEeeeCC
Q 016224          297 VWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDS--GNLEVTYTHNEEHGVLALCGMPDS  367 (393)
Q Consensus       297 iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~  367 (393)
                      +||+.+++.+.++..+.  ...++++  +++|++++. +.|.+||..++  +.+..+...  ......+++.|++
T Consensus       290 viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~--G~~P~~~~~~p~G  359 (361)
T 2oiz_A          290 VMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGA--AEASLQVQFHPVG  359 (361)
T ss_dssp             EEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTS--CSSEEEEEECCCS
T ss_pred             EEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccC--CCCcEEEEecCCC
Confidence            99999999999998877  8888887  678888886 99999999887  655544322  2346677777764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.53  E-value=1.3e-12  Score=130.39  Aligned_cols=278  Identities=10%  Similarity=-0.067  Sum_probs=173.1

Q ss_pred             ceeecceEEeeEecCcEEE--e--cCCCeEEEEECCCCcEEEEEecCCcCCEE---------EEEec--CCCCE-EEEEe
Q 016224          106 AVIKTDILCRNWVQGNCMY--G--EKCKFLHSWTVGDGFKLLTQLEGHQKVVS---------GITLP--SGSDK-LYSGS  169 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~~~~~--g--~~dg~i~vwd~~~~~~~~~~l~~h~~~I~---------~i~~s--~~~~~-l~s~s  169 (393)
                      ..|...+...+++++.++.  .  +.++...||....+ .....+..|...+.         ...|+  ||+++ |+.++
T Consensus        20 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~   98 (662)
T 3azo_A           20 ASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD-GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH   98 (662)
T ss_dssp             HHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT-SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEB
T ss_pred             hhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC-CCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEE
Confidence            3455678889999887664  3  45888999986544 34567777776666         66665  99998 77655


Q ss_pred             C-CCcEEEEECC--C-CeEEEEEec------CCce--EEEEeCCCEEEEE-cC----------CeEEEEECCC------C
Q 016224          170 K-DETVRVWDCA--S-GQCAGVINL------GGEV--GCMISEGPWIFIG-VT----------NFVKAWNTQT------N  220 (393)
Q Consensus       170 ~-dg~v~iwd~~--~-~~~~~~~~~------~~~~--~~~~~~~~~l~~~-~~----------~~i~v~d~~~------~  220 (393)
                      . +..|.+|++.  . ++. ..+..      ....  ..+.++++.|+.. .+          ..|++||+.+      +
T Consensus        99 ~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  177 (662)
T 3azo_A           99 FGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS  177 (662)
T ss_dssp             TTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred             CCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence            4 5677777776  3 443 33332      1122  3455789888765 33          4899999998      6


Q ss_pred             ceeeec-CCCCcEEEEEEeCC--EEEEEeCC--------CcEEEEEec-cCCccccCceeecCceeeEEEEEEc--CCEE
Q 016224          221 TDLSLS-GPVGQVYAMAVGND--LLFAGTQD--------GAILAWKFN-VTTNCFEPAASLKGHSLAVVSLVVG--ANKL  286 (393)
Q Consensus       221 ~~~~~~-~~~~~v~~l~~~~~--~l~~~~~d--------g~I~vwd~~-~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l  286 (393)
                      +...+. .+...+..++|+||  .|+.++.+        ..|++||+. ++.. .+.......+...+..+.|+  ++++
T Consensus       178 ~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~-~~~~~l~~~~~~~~~~~~~spdg~l~  256 (662)
T 3azo_A          178 AVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF-ADTRTLLGGPEEAIAQAEWAPDGSLI  256 (662)
T ss_dssp             GSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE-EEEEEEEEETTBCEEEEEECTTSCEE
T ss_pred             ceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc-cccEEeCCCCCceEcceEECCCCeEE
Confidence            666666 66778888999998  67766644        379999998 3410 01122223345677777775  5677


Q ss_pred             EEecCCC--cEEEeeCCCcceeeEeccCccc--------eEEEEEc--CCEEEEEeCCCcEEEEEcCC-CcceEEEEeec
Q 016224          287 YSGSMDN--SIRVWNLETLQCIQTLTEHTSV--------VMSLLCW--DQFLLSCSLDKTIKVWFATD-SGNLEVTYTHN  353 (393)
Q Consensus       287 ~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~--------v~~l~~~--~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~  353 (393)
                      +++..++  .|.+||+.+++.......+...        +..+.++  +.++++++. +.++||.+.. ...+..+..+ 
T Consensus       257 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~-  334 (662)
T 3azo_A          257 VATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGP-  334 (662)
T ss_dssp             EEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSS-
T ss_pred             EEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCC-
Confidence            7887888  6777787677655444433322        4567775  668888888 9999994432 2334444333 


Q ss_pred             CCccEEEEEeeeCCCCCcEEEEEeCCC--eEEEEeCCcee
Q 016224          354 EEHGVLALCGMPDSEGKPVLLCSCNDN--SVRFYDLPSVI  391 (393)
Q Consensus       354 ~~~~v~~~~~~~~~~~~~~l~s~s~dg--~I~iwd~~s~~  391 (393)
                       ...+..+ +++++. ..++++++.+.  .|.+||+.+++
T Consensus       335 -~~~~~~~-~s~~~~-~~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          335 -WTEWAAT-LTVSGT-RAVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             -CCEEEEE-EEEETT-EEEEEEEETTEEEEEEEEETTTCC
T ss_pred             -CCeEEEE-EecCCC-EEEEEEcCCCCCCEEEEEECCCCc
Confidence             2234444 144432 22344445554  45566666654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.53  E-value=4.9e-11  Score=116.02  Aligned_cols=257  Identities=14%  Similarity=0.097  Sum_probs=174.2

Q ss_pred             EEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECC--CCeEEEEEecCCceEE--EE
Q 016224          123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCA--SGQCAGVINLGGEVGC--MI  198 (393)
Q Consensus       123 ~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~--~~~~~~~~~~~~~~~~--~~  198 (393)
                      ++...++.|.++|..++ +.+.++... ..+..+.|+||+++|++++.|+.|.+||+.  +++.+..+........  +.
T Consensus       171 V~~~~~~~V~viD~~t~-~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s  248 (567)
T 1qks_A          171 VTLRDAGQIALIDGSTY-EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS  248 (567)
T ss_dssp             EEETTTTEEEEEETTTC-CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred             EEeCCCCeEEEEECCCC-eEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEc
Confidence            45778899999999998 788887643 467799999999999999999999999996  8888888876654433  33


Q ss_pred             ----eCCCEEEEE--cCCeEEEEECCCCceeee-c--C--------C-CCcEEEEEEeCC---EEEEEeCCCcEEEEEec
Q 016224          199 ----SEGPWIFIG--VTNFVKAWNTQTNTDLSL-S--G--------P-VGQVYAMAVGND---LLFAGTQDGAILAWKFN  257 (393)
Q Consensus       199 ----~~~~~l~~~--~~~~i~v~d~~~~~~~~~-~--~--------~-~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~  257 (393)
                          +++++++++  .++.|.++|..+.+.+.. .  +        | ...+..+..+++   +++....+|.|.++|..
T Consensus       249 ~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~  328 (567)
T 1qks_A          249 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT  328 (567)
T ss_dssp             CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred             cccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecC
Confidence                378888876  668999999999887622 1  1        1 226778888775   66666778999999987


Q ss_pred             cCCccccCceeecCceeeEEEEEE--cCCEEEE-ecCCCcEEEeeCCCcceeeEecc-----CccceEEEEEc--CC-EE
Q 016224          258 VTTNCFEPAASLKGHSLAVVSLVV--GANKLYS-GSMDNSIRVWNLETLQCIQTLTE-----HTSVVMSLLCW--DQ-FL  326 (393)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~s-g~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~l~~~--~~-~l  326 (393)
                      .....  .+..+. .......+.|  ++++|++ ...++.|.++|+.+++.+..+..     |.+.-..+ ++  +. .+
T Consensus       329 ~~~~~--~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~  404 (567)
T 1qks_A          329 DLNNL--KTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVW  404 (567)
T ss_dssp             CSSEE--EEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEE
T ss_pred             CCccc--eeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEE
Confidence            64210  111111 1122334455  4666554 45688999999999998877654     32222223 23  23 44


Q ss_pred             EEEe-CCCcEEEEEcCC-------CcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeC-------CCeEEEEeCCce
Q 016224          327 LSCS-LDKTIKVWFATD-------SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN-------DNSVRFYDLPSV  390 (393)
Q Consensus       327 ~s~s-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~-------dg~I~iwd~~s~  390 (393)
                      ++.. .+++|.++|...       .+.+..+....  .....+..+|+++   +|.+...       .+.|.++|+.+.
T Consensus       405 ~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g--~g~~~i~~~p~~~---~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          405 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG--GGSLFIKTHPNSQ---YLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC--SCCCCEECCTTCS---EEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             EeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC--CCCEEEEeCCCCC---eEEEecCCCCCcccCceEEEEECCcc
Confidence            4443 468999999876       33444444332  2233455666554   7777653       459999999876

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.52  E-value=3.1e-11  Score=111.78  Aligned_cols=265  Identities=12%  Similarity=0.076  Sum_probs=173.6

Q ss_pred             ecCcEEEecCCCeEEEEECCCCcEEEEEecCC---------cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 016224          118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGH---------QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI  188 (393)
Q Consensus       118 ~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h---------~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~  188 (393)
                      ..+.+++++.++.|+.+|..++ +.+......         ...+.+.- ..++..|+.++.++.|..+|..+++.+...
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~  129 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDG-KEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQT  129 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTC-CEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCC-ceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence            4667778888999999999998 555554432         22332222 124567888999999999999999998888


Q ss_pred             ecCCceE--EEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcE------EEEEEeCCEEEEEeCCCcEEEEEeccCC
Q 016224          189 NLGGEVG--CMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQV------YAMAVGNDLLFAGTQDGAILAWKFNVTT  260 (393)
Q Consensus       189 ~~~~~~~--~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v------~~l~~~~~~l~~~~~dg~I~vwd~~~~~  260 (393)
                      .....+.  ....++.+++...++.|..+|..+++.+-.......+      .......+.+++++.++.|..+|..++.
T Consensus       130 ~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~  209 (376)
T 3q7m_A          130 KVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQ  209 (376)
T ss_dssp             ECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCC
T ss_pred             eCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCc
Confidence            7654331  2234554555557889999999999876222222222      2233445688888999999999998775


Q ss_pred             ccccCceeecCcee---e---E-EEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCCEEEEEeCCC
Q 016224          261 NCFEPAASLKGHSL---A---V-VSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDK  333 (393)
Q Consensus       261 ~~~~~~~~~~~~~~---~---v-~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg  333 (393)
                      ..++..........   .   + ......++.++.++.++.|..+|.++++.+.....  .....+...+..++.++.++
T Consensus       210 ~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~l~~~~~~g  287 (376)
T 3q7m_A          210 MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIVDGNRIYLVDQND  287 (376)
T ss_dssp             EEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEEETTEEEEEETTC
T ss_pred             EEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceEECCEEEEEcCCC
Confidence            32221100000000   0   0 11123467888888999999999999998876653  33456666788999999999


Q ss_pred             cEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          334 TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       334 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      .|..+|..+++.+......... .......  ...   .|+.++.+|.|.++|..++++
T Consensus       288 ~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~--~~~---~l~v~~~~g~l~~~d~~tG~~  340 (376)
T 3q7m_A          288 RVMALTIDGGVTLWTQSDLLHR-LLTSPVL--YNG---NLVVGDSEGYLHWINVEDGRF  340 (376)
T ss_dssp             CEEEEETTTCCEEEEECTTTTS-CCCCCEE--ETT---EEEEECTTSEEEEEETTTCCE
T ss_pred             eEEEEECCCCcEEEeecccCCC-cccCCEE--ECC---EEEEEeCCCeEEEEECCCCcE
Confidence            9999999888765443311111 1111111  122   688899999999999998875

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.51  E-value=7e-12  Score=116.33  Aligned_cols=248  Identities=10%  Similarity=0.016  Sum_probs=155.9

Q ss_pred             EECCCCcEEEEEecCCcCCEEE-----EEecCCCCEEEEEeC-CC--cEEEEECCCCeEEEEEecCCce---EEEEeCCC
Q 016224          134 WTVGDGFKLLTQLEGHQKVVSG-----ITLPSGSDKLYSGSK-DE--TVRVWDCASGQCAGVINLGGEV---GCMISEGP  202 (393)
Q Consensus       134 wd~~~~~~~~~~l~~h~~~I~~-----i~~s~~~~~l~s~s~-dg--~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~  202 (393)
                      +|..++ ..+..+..|......     .+|+|||++|+.++. ++  .|.+||+.+++...........   ..+.++++
T Consensus        15 ~~~~~g-~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~   93 (388)
T 3pe7_A           15 QDASTG-AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD   93 (388)
T ss_dssp             ECTTTC-CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS
T ss_pred             ecCCCC-cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC
Confidence            466667 677788888877776     889999999999887 66  4888899998877666544322   35667888


Q ss_pred             EEEEE-cCCeEEEEECCCCceee-ecCCCCcEEEEE--EeCC--EEEEE----------------------eCCCcEEEE
Q 016224          203 WIFIG-VTNFVKAWNTQTNTDLS-LSGPVGQVYAMA--VGND--LLFAG----------------------TQDGAILAW  254 (393)
Q Consensus       203 ~l~~~-~~~~i~v~d~~~~~~~~-~~~~~~~v~~l~--~~~~--~l~~~----------------------~~dg~I~vw  254 (393)
                      .|+.. .++.|++||+.+++... ...+...+....  ++++  +++..                      ..+..|.+|
T Consensus        94 ~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  173 (388)
T 3pe7_A           94 ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV  173 (388)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence            87766 56799999999988763 334444444333  3666  44422                      234678999


Q ss_pred             EeccCCccccCceeecCceeeEEEEEEcC---CEEEEecC------CCcEEEeeCCCcceeeEeccCc--cceEEEEEc-
Q 016224          255 KFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSM------DNSIRVWNLETLQCIQTLTEHT--SVVMSLLCW-  322 (393)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~--~~v~~l~~~-  322 (393)
                      |+.++..     ..+..+...+..+.+++   +.|+....      ...|.++|+..++. ..+..+.  ..+..+.|+ 
T Consensus       174 d~~~g~~-----~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~sp  247 (388)
T 3pe7_A          174 DLKTGES-----TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVP  247 (388)
T ss_dssp             ETTTCCE-----EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECT
T ss_pred             ECCCCce-----EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECC
Confidence            9887632     22333444556666654   56666554      33788888876543 4444444  357778887 


Q ss_pred             -CCEEEEEeC-CC----cEEEEEcCCCcceEEEEeecCCccE----EEEEeeeCCCCCcEEEEE---------eCCCeEE
Q 016224          323 -DQFLLSCSL-DK----TIKVWFATDSGNLEVTYTHNEEHGV----LALCGMPDSEGKPVLLCS---------CNDNSVR  383 (393)
Q Consensus       323 -~~~l~s~s~-dg----~i~iwd~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~~l~s~---------s~dg~I~  383 (393)
                       ++.|+..+. ++    .|.+||+.+++.... .........    ....|+|++.   .|+..         ..+..|+
T Consensus       248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~~~~~~~~~~~~~~~spdg~---~l~~~~~~~~~~~~~~~~~i~  323 (388)
T 3pe7_A          248 DGSALVYVSYLKGSPDRFIYSADPETLENRQL-TSMPACSHLMSNYDGSLMVGDGS---DAPVDVQDDSGYKIENDPFLY  323 (388)
T ss_dssp             TSSCEEEEEEETTCCCEEEEEECTTTCCEEEE-EEECCEEEEEECTTSSEEEEEEC---CC------------CCCCEEE
T ss_pred             CCCEEEEEecCCCCCcceEEEEecCCCceEEE-EcCCCceeeeecCCCCeEccCCC---cceeEeeeccccccCCCCEEE
Confidence             565544333 22    399999987664322 221110000    1125778755   44432         5567899


Q ss_pred             EEeCCceee
Q 016224          384 FYDLPSVII  392 (393)
Q Consensus       384 iwd~~s~~l  392 (393)
                      +||+.++++
T Consensus       324 ~~d~~~~~~  332 (388)
T 3pe7_A          324 VFNMKNGTQ  332 (388)
T ss_dssp             EEETTTTEE
T ss_pred             EEeccCCce
Confidence            999988753

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.50  E-value=4.9e-11  Score=108.46  Aligned_cols=207  Identities=11%  Similarity=0.090  Sum_probs=145.0

Q ss_pred             CeEEEEECCCCcEEEEEec-CCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-EEEEEecC-----------Cce-
Q 016224          129 KFLHSWTVGDGFKLLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ-CAGVINLG-----------GEV-  194 (393)
Q Consensus       129 g~i~vwd~~~~~~~~~~l~-~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~-----------~~~-  194 (393)
                      +.|.+||..++ +.+..+. ++-.....|+++++++++++...++.|++||..... .+..+...           .+. 
T Consensus        69 ~~i~~~d~~~g-~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~  147 (329)
T 3fvz_A           69 DTILVIDPNNA-EILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTD  147 (329)
T ss_dssp             CCEEEECTTTC-CEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEE
T ss_pred             CcEEEEECCCC-eEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcE
Confidence            37999999888 6665554 455789999999999988888889999999986542 45555310           122 


Q ss_pred             EEEEe-CCCEEEEE--cCCeEEEEECCCCcee-eec----------CCCCcEEEEEEeCC---EEEEEeCCCcEEEEEec
Q 016224          195 GCMIS-EGPWIFIG--VTNFVKAWNTQTNTDL-SLS----------GPVGQVYAMAVGND---LLFAGTQDGAILAWKFN  257 (393)
Q Consensus       195 ~~~~~-~~~~l~~~--~~~~i~v~d~~~~~~~-~~~----------~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~  257 (393)
                      ..+.+ ++.++++.  .++.|++|+. .+..+ .+.          .+......++++++   ++++...++.|++||..
T Consensus       148 ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~  226 (329)
T 3fvz_A          148 VAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD  226 (329)
T ss_dssp             EEECTTTCCEEEEECSSCCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence            22334 67777776  3679999994 44444 332          12234889999875   66677788899999988


Q ss_pred             cCCccccCceee--cCceeeEEEEEEcCCEEE--------EecCCCcEEEeeCCCcceeeEec---cCccceEEEEEc--
Q 016224          258 VTTNCFEPAASL--KGHSLAVVSLVVGANKLY--------SGSMDNSIRVWNLETLQCIQTLT---EHTSVVMSLLCW--  322 (393)
Q Consensus       258 ~~~~~~~~~~~~--~~~~~~v~~l~~~~~~l~--------sg~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~l~~~--  322 (393)
                      ++    +.+..+  ..+...+..+++.+..++        +...+..|++||+.+++.+..+.   .+......|+++  
T Consensus       227 ~G----~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~d  302 (329)
T 3fvz_A          227 TK----EFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASED  302 (329)
T ss_dssp             TC----CEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTT
T ss_pred             CC----cEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCC
Confidence            55    223333  234445566666554333        23345689999999999998884   566678899998  


Q ss_pred             CCEEEEEeCCCcEEEEEcC
Q 016224          323 DQFLLSCSLDKTIKVWFAT  341 (393)
Q Consensus       323 ~~~l~s~s~dg~i~iwd~~  341 (393)
                      +.++++...++.|++|++.
T Consensus       303 G~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          303 GTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             SEEEEEESSSCCEEEEEEE
T ss_pred             CCEEEEECCCCEEEEEeCC
Confidence            5577778889999999975

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.49  E-value=7.1e-11  Score=104.86  Aligned_cols=223  Identities=9%  Similarity=0.125  Sum_probs=150.0

Q ss_pred             ceEEeeEecC-cEEE-ecCCCeEEEEECCCCcEEEEEec------CCcCCEEEEEe-cCCCCEEEEEeC-CCcEEEEECC
Q 016224          111 DILCRNWVQG-NCMY-GEKCKFLHSWTVGDGFKLLTQLE------GHQKVVSGITL-PSGSDKLYSGSK-DETVRVWDCA  180 (393)
Q Consensus       111 ~i~c~~~~~~-~~~~-g~~dg~i~vwd~~~~~~~~~~l~------~h~~~I~~i~~-s~~~~~l~s~s~-dg~v~iwd~~  180 (393)
                      ...++++.++ .++. ...++.|.+||.. + +.+..+.      +|...+..+++ .++++++++... ++.|.+|| .
T Consensus        31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~  107 (286)
T 1q7f_A           31 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-G-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-Q  107 (286)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-S-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-T
T ss_pred             CCceEEECCCCCEEEEECCCCEEEEECCC-C-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-C
Confidence            4567777765 4444 4678999999987 4 4555553      34568999999 467766665533 88999999 5


Q ss_pred             CCeEEEEEecC--CceEEE--EeCCCEEEEE-cCCeEEEEECCCCceeeec--CCCCcEEEEEEeCC--EEEEEeCCCcE
Q 016224          181 SGQCAGVINLG--GEVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTDLSLS--GPVGQVYAMAVGND--LLFAGTQDGAI  251 (393)
Q Consensus       181 ~~~~~~~~~~~--~~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~--~~~~~v~~l~~~~~--~l~~~~~dg~I  251 (393)
                      +++.+..+...  ..+..+  .+++.++++. .++.|.+|+........+.  .+...+..++++++  ++++...++.|
T Consensus       108 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i  187 (286)
T 1q7f_A          108 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV  187 (286)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred             CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEE
Confidence            67777766533  223333  3577777776 4679999997644333332  44567899999987  56666678999


Q ss_pred             EEEEeccCCccccCceeec--CceeeEEEEEEc--CCEEEEecCCC-cEEEeeCCCcceeeEeccCcc--ceEEEEEc--
Q 016224          252 LAWKFNVTTNCFEPAASLK--GHSLAVVSLVVG--ANKLYSGSMDN-SIRVWNLETLQCIQTLTEHTS--VVMSLLCW--  322 (393)
Q Consensus       252 ~vwd~~~~~~~~~~~~~~~--~~~~~v~~l~~~--~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~~--~v~~l~~~--  322 (393)
                      ++||....     .+..+.  ++...+..++++  ++++++...++ .|.+||. +++.+..+..+..  .+.+++++  
T Consensus       188 ~~~~~~g~-----~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~  261 (286)
T 1q7f_A          188 KVFNYEGQ-----YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD  261 (286)
T ss_dssp             EEEETTCC-----EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred             EEEcCCCC-----EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCC
Confidence            99997532     222332  223456777775  55777776775 9999995 5677777765433  36788887  


Q ss_pred             CCEEEEEeCCCcEEEEEcCCC
Q 016224          323 DQFLLSCSLDKTIKVWFATDS  343 (393)
Q Consensus       323 ~~~l~s~s~dg~i~iwd~~~~  343 (393)
                      ++++++ +.|+.|++|++...
T Consensus       262 g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          262 GSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             TEEEEE-ETTTEEEEEECSCC
T ss_pred             CcEEEE-CCCCeEEEEEcccc
Confidence            445555 67999999998643

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.49  E-value=1.9e-11  Score=111.12  Aligned_cols=230  Identities=9%  Similarity=-0.039  Sum_probs=154.4

Q ss_pred             EEeeEecCcEEE-ecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 016224          113 LCRNWVQGNCMY-GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG  191 (393)
Q Consensus       113 ~c~~~~~~~~~~-g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~  191 (393)
                      ..+.+..+.++. ...++.|.+||..++ +.+.++. .......|+++++++..++...++.|.+||..+++....+...
T Consensus        47 ~~i~~~~~~lyv~~~~~~~v~viD~~t~-~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g  124 (328)
T 3dsm_A           47 QSMVIRDGIGWIVVNNSHVIFAIDINTF-KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECP  124 (328)
T ss_dssp             EEEEEETTEEEEEEGGGTEEEEEETTTC-CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECT
T ss_pred             eEEEEECCEEEEEEcCCCEEEEEECccc-EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcC
Confidence            445566666664 455789999999998 7777775 4467889999888854444448999999999999988888755


Q ss_pred             C------ceEEEE-eCCCEEEEE--cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC-EE-EEEeCC----------Cc
Q 016224          192 G------EVGCMI-SEGPWIFIG--VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LL-FAGTQD----------GA  250 (393)
Q Consensus       192 ~------~~~~~~-~~~~~l~~~--~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~-~l-~~~~~d----------g~  250 (393)
                      .      ....+. .++.++++.  .++.|.++|+.+++.............+.++++ .+ ++...+          +.
T Consensus       125 ~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~  204 (328)
T 3dsm_A          125 DMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS  204 (328)
T ss_dssp             TCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCE
T ss_pred             CccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCce
Confidence            4      332222 444444444  378999999999887633333445577888887 44 443333          78


Q ss_pred             EEEEEeccCCccccCceeecCc-eeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeE--eccCccceEEEEEc---
Q 016224          251 ILAWKFNVTTNCFEPAASLKGH-SLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQT--LTEHTSVVMSLLCW---  322 (393)
Q Consensus       251 I~vwd~~~~~~~~~~~~~~~~~-~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~---  322 (393)
                      |.++|..+..    ....+... ......++++  +++|+++..  .|.+||+.+++....  +.........++++   
T Consensus       205 v~~id~~t~~----v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~  278 (328)
T 3dsm_A          205 LYRIDAETFT----VEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNN  278 (328)
T ss_dssp             EEEEETTTTE----EEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTT
T ss_pred             EEEEECCCCe----EEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCC
Confidence            9999987653    22222211 1245667776  567777654  899999998876421  22223557788886   


Q ss_pred             CCEEEEE----eCCCcEEEEEcCCCcceEEEEe
Q 016224          323 DQFLLSC----SLDKTIKVWFATDSGNLEVTYT  351 (393)
Q Consensus       323 ~~~l~s~----s~dg~i~iwd~~~~~~~~~~~~  351 (393)
                      +.++++.    ..++.|.+||.. ++.+..+..
T Consensus       279 g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~  310 (328)
T 3dsm_A          279 GEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV  310 (328)
T ss_dssp             CCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred             CeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence            3455555    568899999997 666666554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.48  E-value=3.3e-12  Score=128.23  Aligned_cols=235  Identities=11%  Similarity=0.054  Sum_probs=143.7

Q ss_pred             CCcCCEEEEEecCCCCEEE-----EEeCCCcEEEEECCCCeEE-EE-EecCC-ceEEEEeCCCEEEEE-cCCe-------
Q 016224          148 GHQKVVSGITLPSGSDKLY-----SGSKDETVRVWDCASGQCA-GV-INLGG-EVGCMISEGPWIFIG-VTNF-------  211 (393)
Q Consensus       148 ~h~~~I~~i~~s~~~~~l~-----s~s~dg~v~iwd~~~~~~~-~~-~~~~~-~~~~~~~~~~~l~~~-~~~~-------  211 (393)
                      +|...+..++|||||++||     .|+.+.+|++||+.+++.+ .. +.... ....+.++++.|+.+ .+..       
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence            4666799999999999998     4444578999999998865 21 11111 345566788877765 4444       


Q ss_pred             ------EEEEECCCCce---eee--cCCCCcEEEEEEeCC--EEEEEeCCC----cEEEEEeccCCccccCceeecCcee
Q 016224          212 ------VKAWNTQTNTD---LSL--SGPVGQVYAMAVGND--LLFAGTQDG----AILAWKFNVTTNCFEPAASLKGHSL  274 (393)
Q Consensus       212 ------i~v~d~~~~~~---~~~--~~~~~~v~~l~~~~~--~l~~~~~dg----~I~vwd~~~~~~~~~~~~~~~~~~~  274 (393)
                            |++|++.++..   +..  ..+...+..+.++++  +|+..+.++    .|.+|+...+    . ...+..+..
T Consensus       198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~----~-~~~l~~~~~  272 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK----D-FRLLVKGVG  272 (695)
T ss_dssp             GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS----S-CEEEEECSS
T ss_pred             CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC----c-eEEeecCCC
Confidence                  99999988762   222  234567889999998  555555444    5555543322    1 222222222


Q ss_pred             eEEE-EEEcCCEEEEecC----CCcEEEeeCCCcce--eeEeccC--ccceEEEEEc-CCEEEEEeCCCcEEEEEcC-CC
Q 016224          275 AVVS-LVVGANKLYSGSM----DNSIRVWNLETLQC--IQTLTEH--TSVVMSLLCW-DQFLLSCSLDKTIKVWFAT-DS  343 (393)
Q Consensus       275 ~v~~-l~~~~~~l~sg~~----dg~i~iwd~~~~~~--~~~~~~~--~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~-~~  343 (393)
                      .+.. +..+++ |+..+.    ++.|.+||+.+++.  ...+..+  ...+..+.+. +.++++...|+..+||.+. ++
T Consensus       273 ~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g  351 (695)
T 2bkl_A          273 AKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKG  351 (695)
T ss_dssp             CCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTC
T ss_pred             ceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCC
Confidence            2222 334556 444443    58999999987653  2333333  4457777777 4567788889998888665 23


Q ss_pred             cceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe---CCCeEEEEeCCcee
Q 016224          344 GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC---NDNSVRFYDLPSVI  391 (393)
Q Consensus       344 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s---~dg~I~iwd~~s~~  391 (393)
                      +....+. ......+..+.+++++.  .++++.+   ..++|++||+.+++
T Consensus       352 ~~~~~l~-~~~~~~v~~~~~s~d~~--~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          352 KPVRTVQ-LPGVGAASNLMGLEDLD--DAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             CEEEECC-CSSSSEECCCBSCTTCS--EEEEEEEETTEEEEEEEEETTTCC
T ss_pred             CeeEEec-CCCCeEEEEeecCCCCC--EEEEEEcCCCCCCEEEEEECCCCc
Confidence            3333322 22233455666666432  2343333   35789999998765

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.47  E-value=4.4e-11  Score=110.72  Aligned_cols=256  Identities=13%  Similarity=0.093  Sum_probs=170.3

Q ss_pred             eEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceE
Q 016224          116 NWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG  195 (393)
Q Consensus       116 ~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~  195 (393)
                      ....+.+++++.++.|..+|..++ +.+................  +..++.++.++.|..+|..+++.+..+.......
T Consensus       100 ~~~~~~v~v~~~~g~l~a~d~~tG-~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~  176 (376)
T 3q7m_A          100 TVSGGHVYIGSEKAQVYALNTSDG-TVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL  176 (376)
T ss_dssp             EEETTEEEEEETTSEEEEEETTTC-CEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred             eEeCCEEEEEcCCCEEEEEECCCC-CEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence            445667888999999999999999 6665555433221111222  4578888999999999999999988887654332


Q ss_pred             -------EEEeCCCEEEEEcCCeEEEEECCCCcee-eecCCC--Cc--------E-EEEEEeCCEEEEEeCCCcEEEEEe
Q 016224          196 -------CMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPV--GQ--------V-YAMAVGNDLLFAGTQDGAILAWKF  256 (393)
Q Consensus       196 -------~~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~--~~--------v-~~l~~~~~~l~~~~~dg~I~vwd~  256 (393)
                             ....++.+++...++.+..+|..+++.+ ......  ..        + .......+.+++++.++.|..+|.
T Consensus       177 ~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~  256 (376)
T 3q7m_A          177 SLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDL  256 (376)
T ss_dssp             --CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEET
T ss_pred             eecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEEC
Confidence                   1223444444446789999999998876 222111  00        0 112234558888889999999999


Q ss_pred             ccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEecc-CccceEEEEEcCCEEEEEeCCCcE
Q 016224          257 NVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCWDQFLLSCSLDKTI  335 (393)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~l~s~s~dg~i  335 (393)
                      .++...+    ...  ......+...++.++.++.++.|..+|..+++.+..... ....+......+..|+.++.+|.|
T Consensus       257 ~tG~~~w----~~~--~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l  330 (376)
T 3q7m_A          257 RSGQIMW----KRE--LGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYL  330 (376)
T ss_dssp             TTCCEEE----EEC--CCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEE
T ss_pred             CCCcEEe----ecc--CCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeE
Confidence            8874322    221  122345666788999999999999999999998877652 233344455568889999999999


Q ss_pred             EEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          336 KVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       336 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                      .++|..+++.+.........  +....... .  + .|+.++.+|.|+.|+
T Consensus       331 ~~~d~~tG~~~~~~~~~~~~--~~~~~~~~-~--~-~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          331 HWINVEDGRFVAQQKVDSSG--FQTEPVAA-D--G-KLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEEETTTCCEEEEEECCTTC--BCSCCEEE-T--T-EEEEEBTTSCEEEEE
T ss_pred             EEEECCCCcEEEEEecCCCc--ceeCCEEE-C--C-EEEEEeCCCEEEEEe
Confidence            99999888766555432221  11100011 2  2 688899999999987

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.47  E-value=6.1e-11  Score=119.32  Aligned_cols=236  Identities=8%  Similarity=0.019  Sum_probs=152.8

Q ss_pred             CcCCEEEEEecCCCCEEEEEeCCC-----cEEEEECCCCeEEEEEecC--CceEEEEeCCCEEEEE-cCCe---------
Q 016224          149 HQKVVSGITLPSGSDKLYSGSKDE-----TVRVWDCASGQCAGVINLG--GEVGCMISEGPWIFIG-VTNF---------  211 (393)
Q Consensus       149 h~~~I~~i~~s~~~~~l~s~s~dg-----~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~-~~~~---------  211 (393)
                      |...+..++|||||++||.++.++     +|++||+.+++.+......  .....+.++++.|+.+ .++.         
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~  202 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET  202 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccccc
Confidence            545789999999999998776543     8999999999877643222  2235566788877765 4433         


Q ss_pred             -------EEEEECCCCce---eeecC--CCCcEEEEEEeCC--EEEEEeC-----CCcEEEEEecc------CCccccCc
Q 016224          212 -------VKAWNTQTNTD---LSLSG--PVGQVYAMAVGND--LLFAGTQ-----DGAILAWKFNV------TTNCFEPA  266 (393)
Q Consensus       212 -------i~v~d~~~~~~---~~~~~--~~~~v~~l~~~~~--~l~~~~~-----dg~I~vwd~~~------~~~~~~~~  266 (393)
                             |++|++.++..   +....  +...+..+.|+++  +|+..+.     +..|++||+..      +..   ..
T Consensus       203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~---~~  279 (710)
T 2xdw_A          203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL---KW  279 (710)
T ss_dssp             CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC---CC
T ss_pred             ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc---ce
Confidence                   99999988762   22222  4556889999998  5555543     56899999986      321   12


Q ss_pred             eeecCceee-EEEEEEcCCEEEEecCC----CcEEEeeCCCcc--eeeEeccCcc--ceEEEEEc-CC-EEEEEeCCCc-
Q 016224          267 ASLKGHSLA-VVSLVVGANKLYSGSMD----NSIRVWNLETLQ--CIQTLTEHTS--VVMSLLCW-DQ-FLLSCSLDKT-  334 (393)
Q Consensus       267 ~~~~~~~~~-v~~l~~~~~~l~sg~~d----g~i~iwd~~~~~--~~~~~~~~~~--~v~~l~~~-~~-~l~s~s~dg~-  334 (393)
                      ..+..+... ...+..+++.|+..+..    +.|.+||+.++.  ....+..|..  .+..+.+. ++ ++++...|+. 
T Consensus       280 ~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~  359 (710)
T 2xdw_A          280 VKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN  359 (710)
T ss_dssp             EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred             EEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence            333333322 23455677876655543    369999998764  2355555544  57778887 44 6677777875 


Q ss_pred             -EEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeC---CCeEEEEeCCcee
Q 016224          335 -IKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN---DNSVRFYDLPSVI  391 (393)
Q Consensus       335 -i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~---dg~I~iwd~~s~~  391 (393)
                       |.+|++.+++.+..+..+  ...+..+.++|++.  .++++.+.   .++|++||+.+++
T Consensus       360 ~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~--~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          360 TLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDT--EIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEETTTCCEEEEECCC--SSEEEEEECCTTCS--EEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEECCCCCEEEecCCC--CceEEEEecCCCCC--EEEEEEeCCCCCCEEEEEECCCCc
Confidence             566676556555554443  34567777776542  34444333   5789999998765

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.47  E-value=3.7e-10  Score=104.34  Aligned_cols=252  Identities=10%  Similarity=-0.020  Sum_probs=161.2

Q ss_pred             eEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe----------CCCcEEEEECCCCeEEEEEecC--------
Q 016224          130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS----------KDETVRVWDCASGQCAGVINLG--------  191 (393)
Q Consensus       130 ~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~--------  191 (393)
                      .|.++|..++ +.+.++.....+  .++++||+++|+.+.          .++.|.+||..+.+.+..+...        
T Consensus        48 ~v~v~D~~t~-~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g  124 (373)
T 2mad_H           48 QQWVLDAGSG-SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVG  124 (373)
T ss_pred             EEEEEECCCC-eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccC
Confidence            7899999998 788888765555  899999999999886          3678999999999888887654        


Q ss_pred             --CceEEEEeCCCEEEEEc---CCeEEEEECCCCceeee-cCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccC
Q 016224          192 --GEVGCMISEGPWIFIGV---TNFVKAWNTQTNTDLSL-SGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEP  265 (393)
Q Consensus       192 --~~~~~~~~~~~~l~~~~---~~~i~v~d~~~~~~~~~-~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~  265 (393)
                        .....+.+++++|+++.   ++.|.++| .+++.... ......+......+..+++.+.||.+.++|. .+......
T Consensus       125 ~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~  202 (373)
T 2mad_H          125 PYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAG  202 (373)
T ss_pred             CCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEE
Confidence              11234567999988763   46899999 99887744 4433333222223337777889999999999 55321000


Q ss_pred             c--eeecCceeeE-E--EEEEcCCEEEEecCCCcEEEeeCCCcc--eeeEeccC----------ccceEEEEEc--CCEE
Q 016224          266 A--ASLKGHSLAV-V--SLVVGANKLYSGSMDNSIRVWNLETLQ--CIQTLTEH----------TSVVMSLLCW--DQFL  326 (393)
Q Consensus       266 ~--~~~~~~~~~v-~--~l~~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~----------~~~v~~l~~~--~~~l  326 (393)
                      .  ..+ .....+ .  .+..++..++..+..+.+.+.|+.+..  .+..+...          ......+.++  ++.+
T Consensus       203 ~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l  281 (373)
T 2mad_H          203 LVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI  281 (373)
T ss_pred             eccccc-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence            0  000 111111 1  122334443433467899999997542  23333211          1112224444  5555


Q ss_pred             EEEeC----------CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe-CCCeEEEEeCCceee
Q 016224          327 LSCSL----------DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDLPSVII  392 (393)
Q Consensus       327 ~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s-~dg~I~iwd~~s~~l  392 (393)
                      +++..          ++.|.++|+.+.+.+..+....   ....+.++|++  +.+++++. .++.|.+||+.++++
T Consensus       282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~---~p~~i~~s~Dg--~~~l~v~~~~~~~V~ViD~~t~~v  353 (373)
T 2mad_H          282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH---DVDAISVAQDG--GPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             EEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC---CcCeEEECCCC--CeEEEEEcCCCCeEEEEECCCCCE
Confidence            55432          3579999998887766664322   36778887763  32566666 589999999998875

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.46  E-value=1.1e-10  Score=105.88  Aligned_cols=255  Identities=9%  Similarity=0.013  Sum_probs=159.5

Q ss_pred             ceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 016224          111 DILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI  188 (393)
Q Consensus       111 ~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~  188 (393)
                      .+.++.|+++.  ++....++.++.|   .+ +....+..+...+.+++|++++++++++..++.|.+||..+++.....
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~   82 (333)
T 2dg1_A            7 DLPTLFYSGKSNSAVPIISESELQTI---TA-EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF   82 (333)
T ss_dssp             CCCBCCSCGGGGCSSCCCCGGGSCEE---EC-EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred             ccceeeecCCccceeEEeecccCccc---cc-ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence            35556666553  2334667788888   33 566677778888899999999998888888999999999988766554


Q ss_pred             -ecCCceEEEE--eCCCEEEEEcC-----CeEEEEECCCCceee-ec--CCCCcEEEEEEeCC-EEEEEeC-------CC
Q 016224          189 -NLGGEVGCMI--SEGPWIFIGVT-----NFVKAWNTQTNTDLS-LS--GPVGQVYAMAVGND-LLFAGTQ-------DG  249 (393)
Q Consensus       189 -~~~~~~~~~~--~~~~~l~~~~~-----~~i~v~d~~~~~~~~-~~--~~~~~v~~l~~~~~-~l~~~~~-------dg  249 (393)
                       .....+..+.  ++++++++...     +.|.+||..++.... +.  .....+..+.++++ .++.++.       .+
T Consensus        83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~  162 (333)
T 2dg1_A           83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG  162 (333)
T ss_dssp             ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred             eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence             2334444443  57777777644     489999998877542 22  24457899999988 3444433       24


Q ss_pred             cEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEE-EEecCCCcEEEeeCCC-cceeeE--------eccCccceE
Q 016224          250 AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKL-YSGSMDNSIRVWNLET-LQCIQT--------LTEHTSVVM  317 (393)
Q Consensus       250 ~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l-~sg~~dg~i~iwd~~~-~~~~~~--------~~~~~~~v~  317 (393)
                      .|..+|.....     ...+......+..++++  ++.| ++.+.++.|.+||+.+ ++.+..        +..+ ..+.
T Consensus       163 ~l~~~~~~~~~-----~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~  236 (333)
T 2dg1_A          163 GVYYVSPDFRT-----VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPD  236 (333)
T ss_dssp             EEEEECTTSCC-----EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEE
T ss_pred             eEEEEeCCCCE-----EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCC
Confidence            45555443321     11122222345667775  4555 4555688999999964 333322        1222 3567


Q ss_pred             EEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecC----CccEEEEEeeeCCCCCcEEEEEeCC
Q 016224          318 SLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE----EHGVLALCGMPDSEGKPVLLCSCND  379 (393)
Q Consensus       318 ~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~l~s~s~d  379 (393)
                      .++++  ++++++...++.|.+||. +++.+..+.....    ...+..++|.++.  + .|+.++.+
T Consensus       237 ~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg--~-~L~v~~~~  300 (333)
T 2dg1_A          237 SCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGT--N-QLIICSND  300 (333)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTS--C-EEEEEEEC
T ss_pred             ceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCC--C-EEEEEeCc
Confidence            78887  567777777899999998 4554444433221    0146778887653  2 45544444

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.45  E-value=2.9e-09  Score=94.57  Aligned_cols=266  Identities=10%  Similarity=0.024  Sum_probs=167.3

Q ss_pred             ceEEeeEecC-cEEEecC-CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 016224          111 DILCRNWVQG-NCMYGEK-CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI  188 (393)
Q Consensus       111 ~i~c~~~~~~-~~~~g~~-dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~  188 (393)
                      .+.++++.++ .++.+.. ++.|.+||.. +......+..+...+.+|++++++.++++...++.|..||.. ++. ..+
T Consensus        16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~   92 (299)
T 2z2n_A           16 GPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEY   92 (299)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEE
T ss_pred             CccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEE
Confidence            5678888765 4555554 7899999988 522222333456789999999999988877778899999986 433 333


Q ss_pred             ec---CCceEEEE--eCCCEEEEE-cCCeEEEEECCCCceee--ecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEecc
Q 016224          189 NL---GGEVGCMI--SEGPWIFIG-VTNFVKAWNTQTNTDLS--LSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV  258 (393)
Q Consensus       189 ~~---~~~~~~~~--~~~~~l~~~-~~~~i~v~d~~~~~~~~--~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~  258 (393)
                      ..   ...+..+.  +++.+.++. .++.|..||. +++...  .......+..++++++  ++++...++.|..||. +
T Consensus        93 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~  170 (299)
T 2z2n_A           93 TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S  170 (299)
T ss_dssp             ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T
T ss_pred             eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C
Confidence            32   22333333  467776666 4679999998 555442  2334567899999887  5555556789999988 4


Q ss_pred             CCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeE-eccCccceEEEEEc--CCEEEEEeCCC
Q 016224          259 TTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQT-LTEHTSVVMSLLCW--DQFLLSCSLDK  333 (393)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~--~~~l~s~s~dg  333 (393)
                      +..  . ..........+..++++  ++++++...++.|.+||. +++.... +..+...+.++.++  +.++++...++
T Consensus       171 g~~--~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~  246 (299)
T 2z2n_A          171 GDI--T-EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGAN  246 (299)
T ss_dssp             CCE--E-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred             CcE--E-EeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCc
Confidence            321  1 11122233456677776  456666666889999999 6664332 23345678888887  45555555778


Q ss_pred             cEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          334 TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       334 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      .|.+||. ++ .+..+........+..+.+ +++.   +.++.. .+.|..++..+.++
T Consensus       247 ~i~~~d~-~g-~~~~~~~~~~~~~~~~i~~-~~g~---l~v~~~-~~~l~~~~~~~~~~  298 (299)
T 2z2n_A          247 KIGRLTS-NN-IIEEYPIQIKSAEPHGICF-DGET---IWFAME-CDKIGKLTLIKDNM  298 (299)
T ss_dssp             EEEEEET-TT-EEEEEECSSSSCCEEEEEE-CSSC---EEEEET-TTEEEEEEEC----
T ss_pred             eEEEECC-CC-ceEEEeCCCCCCccceEEe-cCCC---EEEEec-CCcEEEEEcCcccC
Confidence            9999998 33 3333322222345777777 5433   444444 67788888887654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.45  E-value=4.7e-11  Score=105.68  Aligned_cols=200  Identities=11%  Similarity=0.062  Sum_probs=139.7

Q ss_pred             cCc-EEEecCCCeEEEEECCCCcEEEEEecCCc-CCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--ce
Q 016224          119 QGN-CMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG--EV  194 (393)
Q Consensus       119 ~~~-~~~g~~dg~i~vwd~~~~~~~~~~l~~h~-~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~~  194 (393)
                      +++ +++++.++.|++||.+++ +.+.++..+. ..+.+++++|+|++|+  +.++.|..||. +++.+..+..+.  .+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG-~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTK-EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTT-EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCC-eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            444 456889999999999999 8888888776 5789999999999888  45788999999 899999988753  33


Q ss_pred             E--EEEeCCCEEEEEc--CCeEEEEECCCCcee-eec------CCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCc
Q 016224          195 G--CMISEGPWIFIGV--TNFVKAWNTQTNTDL-SLS------GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTN  261 (393)
Q Consensus       195 ~--~~~~~~~~l~~~~--~~~i~v~d~~~~~~~-~~~------~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~  261 (393)
                      .  ...++++++++..  .+.|..++. +++.+ .+.      .+......+.+.++  ++++...++.|.+||.. ++.
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~  157 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL  157 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence            2  2346888888864  457777776 44443 221      11123334455555  88888999999999987 532


Q ss_pred             cccCceeecCceeeEEEEE--EcCCEEEEecCCCcEEEeeCCCcceeeEeccCc------cceEEEEEc--CCEEEEE
Q 016224          262 CFEPAASLKGHSLAVVSLV--VGANKLYSGSMDNSIRVWNLETLQCIQTLTEHT------SVVMSLLCW--DQFLLSC  329 (393)
Q Consensus       262 ~~~~~~~~~~~~~~v~~l~--~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~l~~~--~~~l~s~  329 (393)
                          +..+.... ...++.  .+++.++++..++.|..+|..+++.+.++..+.      ..+..+...  +..+++.
T Consensus       158 ----~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          158 ----LNSVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             ----EEEEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             ----EEEEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence                33333221 122222  357788888888899999999999999886432      124555554  5555555

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.45  E-value=2e-10  Score=105.35  Aligned_cols=257  Identities=11%  Similarity=0.055  Sum_probs=165.3

Q ss_pred             CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe----------CCCcEEEEECCCCeEEEEEecCC-----
Q 016224          128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS----------KDETVRVWDCASGQCAGVINLGG-----  192 (393)
Q Consensus       128 dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~-----  192 (393)
                      ++.|.+.|..+. +.+.++..-..+ . ++++||+++|+++.          .++.|.+||..+.+.+..+..+.     
T Consensus        58 ~~~V~ViD~~t~-~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~  134 (386)
T 3sjl_D           58 VTQQFVIDGEAG-RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL  134 (386)
T ss_dssp             SEEEEEEETTTT-EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred             CCEEEEEECCCC-eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccc
Confidence            579999999998 888888755555 4 99999999998876          36789999999999999887542     


Q ss_pred             -----ceEEEEeCCCEEEEEc---CCeEEEEECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCcccc
Q 016224          193 -----EVGCMISEGPWIFIGV---TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFE  264 (393)
Q Consensus       193 -----~~~~~~~~~~~l~~~~---~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~  264 (393)
                           ....+.+++++++++.   ++.|.++|+.+++.+....-.+...........+++.+.||++.+.++........
T Consensus       135 ~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~  214 (386)
T 3sjl_D          135 VGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI  214 (386)
T ss_dssp             BSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred             cCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEE
Confidence                 2355668999888763   57999999999998733222222111112334777888999999999876321100


Q ss_pred             -CceeecCceeeEE-EEEEc--CCEEEEecCCCcEEEeeCCCcc--eeeEecc----------CccceEEEEEc--CCEE
Q 016224          265 -PAASLKGHSLAVV-SLVVG--ANKLYSGSMDNSIRVWNLETLQ--CIQTLTE----------HTSVVMSLLCW--DQFL  326 (393)
Q Consensus       265 -~~~~~~~~~~~v~-~l~~~--~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~----------~~~~v~~l~~~--~~~l  326 (393)
                       ....+......+. ...+.  ...++..+.+|.|.+.|+.+..  .+..+..          .......+.++  ++.+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~l  294 (386)
T 3sjl_D          215 THTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRI  294 (386)
T ss_dssp             EECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEE
T ss_pred             eecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeE
Confidence             0000110111111 12332  2344445568999999997653  3333320          01112223444  5555


Q ss_pred             EEEeC----------CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEE-eCCCeEEEEeCCceee
Q 016224          327 LSCSL----------DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS-CNDNSVRFYDLPSVII  392 (393)
Q Consensus       327 ~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~-s~dg~I~iwd~~s~~l  392 (393)
                      +....          ...|.++|+.+.+.+..+....   ....+.++++.  +++|++. ..++.|.++|..++++
T Consensus       295 yV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~---~~~~lavs~D~--~~~ly~tn~~~~~VsViD~~t~k~  366 (386)
T 3sjl_D          295 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH---EIDSINVSQDE--KPLLYALSTGDKTLYIHDAESGEE  366 (386)
T ss_dssp             EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE---EECEEEECSSS--SCEEEEEETTTTEEEEEETTTCCE
T ss_pred             EEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC---CcceEEECCCC--CeEEEEEcCCCCeEEEEECCCCcE
Confidence            55432          2579999999888777766543   36678888775  2255554 5589999999999875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.44  E-value=9.3e-11  Score=104.73  Aligned_cols=222  Identities=11%  Similarity=0.017  Sum_probs=151.5

Q ss_pred             ceEEeeEecCc---EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 016224          111 DILCRNWVQGN---CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV  187 (393)
Q Consensus       111 ~i~c~~~~~~~---~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~  187 (393)
                      ...+..|++++   ++++..++.|+.|+..++   ...+..+...+.+++++++++++++...++.|.+||..+++....
T Consensus        29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~  105 (296)
T 3e5z_A           29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESI  105 (296)
T ss_dssp             SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEE
T ss_pred             cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEE
Confidence            45678888764   446788999999998876   455666788899999999999888777778999999988876544


Q ss_pred             EecCC-------ceEEEEeCCCEEEEE----c--------------CCeEEEEECCCCceeeecCCCCcEEEEEEeCC--
Q 016224          188 INLGG-------EVGCMISEGPWIFIG----V--------------TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--  240 (393)
Q Consensus       188 ~~~~~-------~~~~~~~~~~~l~~~----~--------------~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--  240 (393)
                      .....       ....+.+++.++++.    .              .+.|..++.. ++...+..+......++|+++  
T Consensus       106 ~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~  184 (296)
T 3e5z_A          106 ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGN  184 (296)
T ss_dssp             ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSC
T ss_pred             eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCC
Confidence            32211       113344678877762    2              2466666666 555555666777899999988  


Q ss_pred             EEEEEeCCCcEEEEEeccCCccc-cCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceE
Q 016224          241 LLFAGTQDGAILAWKFNVTTNCF-EPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVM  317 (393)
Q Consensus       241 ~l~~~~~dg~I~vwd~~~~~~~~-~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~  317 (393)
                      .|++.+.++.|.+|++..... . .....+..+...+..++++  ++++++.  ++.|.+||.. ++.+..+..+.. +.
T Consensus       185 ~lv~~~~~~~i~~~~~~~~g~-~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~  259 (296)
T 3e5z_A          185 LLVSDTGDNATHRYCLNARGE-TEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TS  259 (296)
T ss_dssp             EEEEETTTTEEEEEEECSSSC-EEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CC
T ss_pred             EEEEeCCCCeEEEEEECCCCc-CcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ce
Confidence            567777889999999972211 1 0011112233334456665  5544444  8899999986 788888887777 88


Q ss_pred             EEEEc---CCEEEEEeCCCcEEEEEcCC
Q 016224          318 SLLCW---DQFLLSCSLDKTIKVWFATD  342 (393)
Q Consensus       318 ~l~~~---~~~l~s~s~dg~i~iwd~~~  342 (393)
                      +++|.   ++.|++++.+ .+.-++..+
T Consensus       260 ~~~f~~~d~~~L~v~t~~-~l~~~~~~~  286 (296)
T 3e5z_A          260 NLCFGGPEGRTLYMTVST-EFWSIETNV  286 (296)
T ss_dssp             EEEEESTTSCEEEEEETT-EEEEEECSC
T ss_pred             eEEEECCCCCEEEEEcCC-eEEEEEccc
Confidence            88884   3578877766 344445543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.40  E-value=8e-10  Score=107.48  Aligned_cols=277  Identities=7%  Similarity=-0.007  Sum_probs=178.7

Q ss_pred             ceEEeeEecCc--EEEecCCCeEEEEECC--CCcEEEEEecCCcCCEEEEEec----CCCCEEEEEeC-CCcEEEEECCC
Q 016224          111 DILCRNWVQGN--CMYGEKCKFLHSWTVG--DGFKLLTQLEGHQKVVSGITLP----SGSDKLYSGSK-DETVRVWDCAS  181 (393)
Q Consensus       111 ~i~c~~~~~~~--~~~g~~dg~i~vwd~~--~~~~~~~~l~~h~~~I~~i~~s----~~~~~l~s~s~-dg~v~iwd~~~  181 (393)
                      ....+.+++++  +++++.++.|.+||+.  +. +.+.++.... ....++|+    |||++++++.. +++|.|+|..+
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence            44578888774  4568889999999995  66 7777777544 45789999    69998887765 59999999999


Q ss_pred             CeEEEEEecCC------------ceEEEE--eCCCEEEEE--cCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC--E
Q 016224          182 GQCAGVINLGG------------EVGCMI--SEGPWIFIG--VTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND--L  241 (393)
Q Consensus       182 ~~~~~~~~~~~------------~~~~~~--~~~~~l~~~--~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~--~  241 (393)
                      .+.+..+....            .+..+.  .++..+++.  ..+.|.++|....+.+  ...........+.|+++  +
T Consensus       276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~  355 (567)
T 1qks_A          276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY  355 (567)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCE
T ss_pred             CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCE
Confidence            99988876432            222222  344444443  5679999998876433  22233456778889987  4


Q ss_pred             E-EEEeCCCcEEEEEeccCCccccCce-eecCcee-eEEEEEEcCCE-EEEec-CCCcEEEeeCCC-------cceeeEe
Q 016224          242 L-FAGTQDGAILAWKFNVTTNCFEPAA-SLKGHSL-AVVSLVVGANK-LYSGS-MDNSIRVWNLET-------LQCIQTL  309 (393)
Q Consensus       242 l-~~~~~dg~I~vwd~~~~~~~~~~~~-~~~~~~~-~v~~l~~~~~~-l~sg~-~dg~i~iwd~~~-------~~~~~~~  309 (393)
                      | ++...++.|.++|+.+......... ....|.. .+.-+..++.. ++++. .++.|.++|..+       .+.++++
T Consensus       356 ~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i  435 (567)
T 1qks_A          356 FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSF  435 (567)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred             EEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEE
Confidence            4 4555789999999987642111100 1122432 22222333343 44443 568999999987       6778887


Q ss_pred             ccCccceEEEEEc--CCEEEEEeC-------CCcEEEEEcCCC-----cce-EEEEee------cCCccEEEEEeeeCCC
Q 016224          310 TEHTSVVMSLLCW--DQFLLSCSL-------DKTIKVWFATDS-----GNL-EVTYTH------NEEHGVLALCGMPDSE  368 (393)
Q Consensus       310 ~~~~~~v~~l~~~--~~~l~s~s~-------dg~i~iwd~~~~-----~~~-~~~~~~------~~~~~v~~~~~~~~~~  368 (393)
                      ......-.-+..+  +++|.+...       ..+|.++|+.+.     ... ..+...      .....+..+.|++++.
T Consensus       436 ~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  515 (567)
T 1qks_A          436 PALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGT  515 (567)
T ss_dssp             ECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSS
T ss_pred             ecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCC
Confidence            7543322223334  667777653       459999999866     222 233210      1234578888888755


Q ss_pred             CCcEEEEEe-----CCCeEEEEeCCceee
Q 016224          369 GKPVLLCSC-----NDNSVRFYDLPSVII  392 (393)
Q Consensus       369 ~~~~l~s~s-----~dg~I~iwd~~s~~l  392 (393)
                         .+..+.     .++.|.|+|..++++
T Consensus       516 ---~~~~s~~~~~~~~~~i~v~D~~t~~~  541 (567)
T 1qks_A          516 ---EVWFSVWNGKDQESALVVVDDKTLEL  541 (567)
T ss_dssp             ---EEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             ---EEEEEeecCCCCCCcEEEEECCCceE
Confidence               454442     379999999999876

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.40  E-value=1.5e-10  Score=105.55  Aligned_cols=215  Identities=9%  Similarity=0.041  Sum_probs=137.3

Q ss_pred             cceEEeeEecCc--EEEecCC---C--eEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC-----------
Q 016224          110 TDILCRNWVQGN--CMYGEKC---K--FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD-----------  171 (393)
Q Consensus       110 ~~i~c~~~~~~~--~~~g~~d---g--~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d-----------  171 (393)
                      ..+....|++++  +++.+.+   +  .|.+|++.++ +.......+ . +..++|+||++.|+.++.+           
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g-~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~  135 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL-SSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFED  135 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT-EEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC-ceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence            457788999875  4444322   3  4888898887 554444433 3 9999999999999888642           


Q ss_pred             ----------------CcEEEEECCCCeEEEEEec-CCceEEEEeCCCEEEEEc-C---------CeEEEEECCCCceee
Q 016224          172 ----------------ETVRVWDCASGQCAGVINL-GGEVGCMISEGPWIFIGV-T---------NFVKAWNTQTNTDLS  224 (393)
Q Consensus       172 ----------------g~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~-~---------~~i~v~d~~~~~~~~  224 (393)
                                      ..|.+||+.+++.+..+.. ......+.+++ +++++. +         ..|.+++  +++...
T Consensus       136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~  212 (347)
T 2gop_A          136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEK  212 (347)
T ss_dssp             -CCCC---------CEEEEEEEETTTTEEEEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEE
T ss_pred             ccceeecCcccccCccceEEEEECCCCeEEeeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEE
Confidence                            5799999999887343332 22233455677 776652 2         1455555  555544


Q ss_pred             ecCCCCcEEEEEEeCC--EEEEEeCC--------CcEEEEEeccCCccccCceeecCceeeEEE-EEEcCCEEEEecCCC
Q 016224          225 LSGPVGQVYAMAVGND--LLFAGTQD--------GAILAWKFNVTTNCFEPAASLKGHSLAVVS-LVVGANKLYSGSMDN  293 (393)
Q Consensus       225 ~~~~~~~v~~l~~~~~--~l~~~~~d--------g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~-l~~~~~~l~sg~~dg  293 (393)
                      +..+ ..+..+  +|+  .|+..+.+        ..|.+||  .+    +.......+...+.. +.|+..++++++.++
T Consensus       213 l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~----~~~~l~~~~~~~~~~~~~~sdg~~~~~~~~~  283 (347)
T 2gop_A          213 MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK----EVMGILDEVDRGVGQAKIKDGKVYFTLFEEG  283 (347)
T ss_dssp             EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS----CEEESSTTCCSEEEEEEEETTEEEEEEEETT
T ss_pred             eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC----ceEeccccCCcccCCccEEcCcEEEEEecCC
Confidence            4444 555555  555  56655543        3677777  32    222223345556664 667523788888999


Q ss_pred             cEEEeeCCCcceeeEeccCccceEEEEEcCCEEEEEeCCCcE-EEEEcC
Q 016224          294 SIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTI-KVWFAT  341 (393)
Q Consensus       294 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i-~iwd~~  341 (393)
                      .++|| +.+++.. .+..+...|.++.+++.++++++.++.. .||.+.
T Consensus       284 ~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          284 SVNLY-IWDGEIK-PIAKGRHWIMGFDVDEIVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEE-EESSSEE-EEECSSSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred             cEEEE-EcCCceE-EEecCCCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence            99999 8766654 4444577888999888666677777665 777775

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.40  E-value=1.3e-10  Score=102.78  Aligned_cols=208  Identities=12%  Similarity=0.089  Sum_probs=139.8

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecCC----ceEEEEeCCCEEEEEcCCeEEEEECCCCcee-eecCC-CCcEEE
Q 016224          161 GSDKLYSGSKDETVRVWDCASGQCAGVINLGG----EVGCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGP-VGQVYA  234 (393)
Q Consensus       161 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~-~~~v~~  234 (393)
                      .+++|++++.|+.|.+||.++++.+..+..+.    ....+.+++++++ +.++.|..||. +++.+ .+..+ ...+.+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence            45789999999999999999999999998753    2344557888888 66788999999 67666 55543 357888


Q ss_pred             EEEeCC--EEEEEeC-CCcEEEEEeccCCccccCc--eeecCceeeE--EEEEEcCCEEEEecCCCcEEEeeCCCcceee
Q 016224          235 MAVGND--LLFAGTQ-DGAILAWKFNVTTNCFEPA--ASLKGHSLAV--VSLVVGANKLYSGSMDNSIRVWNLETLQCIQ  307 (393)
Q Consensus       235 l~~~~~--~l~~~~~-dg~I~vwd~~~~~~~~~~~--~~~~~~~~~v--~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~  307 (393)
                      +.+.++  ++++.+. ++.|..+|.. ++...+..  .....+....  ..+..+++++++...++.|..||.. ++.+.
T Consensus        82 ~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w  159 (276)
T 3no2_A           82 ARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLN  159 (276)
T ss_dssp             EEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             cEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEE
Confidence            888887  6777666 6777777642 22111100  0001111111  2334468899999999999999998 99999


Q ss_pred             EeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCC----ccEEEEEeeeCCCCCcEEEEE
Q 016224          308 TLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE----HGVLALCGMPDSEGKPVLLCS  376 (393)
Q Consensus       308 ~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~l~s~  376 (393)
                      ++.....+ .++...  ++.+++++.+++|..+|..+++.+..+......    ..+..+...++   +.++++.
T Consensus       160 ~~~~~~~~-~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~---G~i~v~~  230 (276)
T 3no2_A          160 SVKLSGTP-FSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQN---GGLYICN  230 (276)
T ss_dssp             EEECSSCC-CEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTT---SCEEEEE
T ss_pred             EEECCCCc-cceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCC---CCEEEEe
Confidence            98765433 334443  678888888889999999888877776543211    12444444443   3366665

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.39  E-value=8.2e-12  Score=115.99  Aligned_cols=244  Identities=8%  Similarity=-0.055  Sum_probs=149.7

Q ss_pred             EEECCCCcEEEEEecCCcCC-----EEEEEecCCCCEEEEEeCC---CcEEEEECCCCeEEEEEecCCce---EEEEeCC
Q 016224          133 SWTVGDGFKLLTQLEGHQKV-----VSGITLPSGSDKLYSGSKD---ETVRVWDCASGQCAGVINLGGEV---GCMISEG  201 (393)
Q Consensus       133 vwd~~~~~~~~~~l~~h~~~-----I~~i~~s~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~  201 (393)
                      .+|..++ +.+..+..+...     +..++|+|||++|+.....   ..|.+||+.+++...........   ..+.+++
T Consensus        14 ~~d~~~g-~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg   92 (396)
T 3c5m_A           14 FVDSDTQ-VKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE   92 (396)
T ss_dssp             EECTTTC-CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS
T ss_pred             eecCCCC-cceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC
Confidence            4466777 566777666444     6778999999998877553   37888999988765544333221   3456788


Q ss_pred             CEEEE-EcCCeEEEEECCCCceeeecC-CCCcEEE---E----------------EEeCC--EEEEE-----eCCCcEEE
Q 016224          202 PWIFI-GVTNFVKAWNTQTNTDLSLSG-PVGQVYA---M----------------AVGND--LLFAG-----TQDGAILA  253 (393)
Q Consensus       202 ~~l~~-~~~~~i~v~d~~~~~~~~~~~-~~~~v~~---l----------------~~~~~--~l~~~-----~~dg~I~v  253 (393)
                      +.|+. +.++.|.+|++.+++...+.. +......   +                .++|+  .++..     ..+..|++
T Consensus        93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~  172 (396)
T 3c5m_A           93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK  172 (396)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred             CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence            88765 566789999999887653332 3322212   1                23333  22221     35567899


Q ss_pred             EEeccCCccccCceeecCceeeEEEEEEcC---CEEEEecCC------CcEEEeeCCCcceeeEeccC--ccceEEEEEc
Q 016224          254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGA---NKLYSGSMD------NSIRVWNLETLQCIQTLTEH--TSVVMSLLCW  322 (393)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~--~~~v~~l~~~  322 (393)
                      ||+.++..     ..+..+...+..+.|++   +.|+..+.+      ..|.+||+..++.. .+..+  ...+..+.|+
T Consensus       173 ~d~~~g~~-----~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~s  246 (396)
T 3c5m_A          173 VDIETGEL-----EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWI  246 (396)
T ss_dssp             EETTTCCE-----EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEEC
T ss_pred             EECCCCcE-----EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEEC
Confidence            99877532     12223445566667654   445554433      46899998765533 33333  2357778887


Q ss_pred             --CCEEEEEeCC-----CcEEEEEcCCCcceEEEEeecCCccEEEEEeee-CCCCCcEEEEEe----------------C
Q 016224          323 --DQFLLSCSLD-----KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMP-DSEGKPVLLCSC----------------N  378 (393)
Q Consensus       323 --~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~l~s~s----------------~  378 (393)
                        +++|+.++.+     +.|++||+.+++... +.....   .. +.|+| ++.   +|++++                .
T Consensus       247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~---~~-~~~s~~dg~---~l~~~~~~~p~~~~~~~~~~~~~  318 (396)
T 3c5m_A          247 PDGSAMAYVSYFKGQTDRVIYKANPETLENEE-VMVMPP---CS-HLMSNFDGS---LMVGDGCDAPVDVADADSYNIEN  318 (396)
T ss_dssp             TTSSCEEEEEEETTTCCEEEEEECTTTCCEEE-EEECCS---EE-EEEECSSSS---EEEEEECCC----------CCCC
T ss_pred             CCCCEEEEEecCCCCccceEEEEECCCCCeEE-eeeCCC---CC-CCccCCCCc---eEEEecCCcceeeccccccccCC
Confidence              5666666543     449999997665432 222211   22 77877 654   676654                3


Q ss_pred             CCeEEEEeCCcee
Q 016224          379 DNSVRFYDLPSVI  391 (393)
Q Consensus       379 dg~I~iwd~~s~~  391 (393)
                      +..|++||+.+++
T Consensus       319 ~~~i~~~d~~~~~  331 (396)
T 3c5m_A          319 DPFLYVLNTKAKS  331 (396)
T ss_dssp             CCEEEEEETTTTB
T ss_pred             CCcEEEEecccCc
Confidence            4789999998764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.38  E-value=1.5e-10  Score=117.07  Aligned_cols=237  Identities=12%  Similarity=-0.006  Sum_probs=146.8

Q ss_pred             CcCCEEEEEecCCCCEEEEEeCC-----CcEEEEECCCCeEEEEEecCC--ceEEEEeCCCEEEEE-cCC----------
Q 016224          149 HQKVVSGITLPSGSDKLYSGSKD-----ETVRVWDCASGQCAGVINLGG--EVGCMISEGPWIFIG-VTN----------  210 (393)
Q Consensus       149 h~~~I~~i~~s~~~~~l~s~s~d-----g~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~-~~~----------  210 (393)
                      |...+..++|||||++||.++.+     .+|++||+.+++.+.......  ....+.++ +.|+.+ .+.          
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence            44578899999999999887654     469999999998765421111  12344567 766654 333          


Q ss_pred             ----eEEEEECCCCce---eeecC--CCCcEEEEEEeCC--EEEEEeCC-----CcEEEEEeccCCccccCceeecCce-
Q 016224          211 ----FVKAWNTQTNTD---LSLSG--PVGQVYAMAVGND--LLFAGTQD-----GAILAWKFNVTTNCFEPAASLKGHS-  273 (393)
Q Consensus       211 ----~i~v~d~~~~~~---~~~~~--~~~~v~~l~~~~~--~l~~~~~d-----g~I~vwd~~~~~~~~~~~~~~~~~~-  273 (393)
                          .|++|++.++..   +....  +...+..+.|+++  +|+..+.+     ..|++||+.++...  ....+..+. 
T Consensus       240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~--~~~~l~~~~~  317 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG--PVTALIPDLK  317 (741)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC--CCEEEECSSS
T ss_pred             CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc--ccEEecCCCC
Confidence                489999987652   22322  3335889999998  56655543     38999999865211  012222222 


Q ss_pred             eeEEEEEEcCCEEEEecC----CCcEEEeeCCCc--ceeeEeccCccceEEEEEcC-CEEEEEeCCCcEEEEEcC-CCcc
Q 016224          274 LAVVSLVVGANKLYSGSM----DNSIRVWNLETL--QCIQTLTEHTSVVMSLLCWD-QFLLSCSLDKTIKVWFAT-DSGN  345 (393)
Q Consensus       274 ~~v~~l~~~~~~l~sg~~----dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~~~-~~l~s~s~dg~i~iwd~~-~~~~  345 (393)
                      .....+..+++.|+..+.    ++.|.+||+.++  +....+..+...+..+.+.+ .++++...|+..+||.+. +++.
T Consensus       318 ~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~  397 (741)
T 1yr2_A          318 AQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKP  397 (741)
T ss_dssp             SCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCE
T ss_pred             ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCc
Confidence            223334567887776665    345999999874  33344444555566777774 467778889988877654 3333


Q ss_pred             eEEEEeecCCccEEEEEeeeCCCCCcEEEEEe---CCCeEEEEeCCcee
Q 016224          346 LEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC---NDNSVRFYDLPSVI  391 (393)
Q Consensus       346 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s---~dg~I~iwd~~s~~  391 (393)
                      ...+. ......+..+.++++++  .++++.+   ..++|++||+.+++
T Consensus       398 ~~~l~-~~~~~~v~~~~~s~d~~--~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          398 AGAVS-LPGIGSASGLSGRPGDR--HAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEECB-CSSSCEEEEEECCBTCS--CEEEEEEETTEEEEEEEEETTTTE
T ss_pred             eeecc-CCCCeEEEEeecCCCCC--EEEEEEcCCCCCCEEEEEECCCCc
Confidence            33322 22234577788877643  2444433   35789999998765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.38  E-value=2e-11  Score=121.69  Aligned_cols=237  Identities=6%  Similarity=-0.045  Sum_probs=153.4

Q ss_pred             EecCCcCCEEEEEecCCCCEEEEE--eCCCcEEEEECCCCeEEEEEecCC-ce-----------EEEE--eCCCE-EEEE
Q 016224          145 QLEGHQKVVSGITLPSGSDKLYSG--SKDETVRVWDCASGQCAGVINLGG-EV-----------GCMI--SEGPW-IFIG  207 (393)
Q Consensus       145 ~l~~h~~~I~~i~~s~~~~~l~s~--s~dg~v~iwd~~~~~~~~~~~~~~-~~-----------~~~~--~~~~~-l~~~  207 (393)
                      .+.+|...|..++|+++.-++++.  +.++...||....+.....+.... .+           ..+.  ++++. |+.+
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            456788999999999887667776  568899999954444344443222 21           2233  67887 7766


Q ss_pred             cC--CeEEEEECC--C-CceeeecC-----CCCcEEEEEEeCC--EEEEEeCC----------CcEEEEEecc------C
Q 016224          208 VT--NFVKAWNTQ--T-NTDLSLSG-----PVGQVYAMAVGND--LLFAGTQD----------GAILAWKFNV------T  259 (393)
Q Consensus       208 ~~--~~i~v~d~~--~-~~~~~~~~-----~~~~v~~l~~~~~--~l~~~~~d----------g~I~vwd~~~------~  259 (393)
                      .+  ..|.++++.  + +....+..     +...+..++|+|+  .|++++.+          ..|++||+..      +
T Consensus        98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  177 (662)
T 3azo_A           98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS  177 (662)
T ss_dssp             BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred             ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence            44  467777776  3 55555555     5678899999998  77777766          5799999887      3


Q ss_pred             CccccCceeec-CceeeEEEEEE--cCCEEEEecCC--------CcEEEeeCC-Cc---ceeeEeccCccceEEEEEc--
Q 016224          260 TNCFEPAASLK-GHSLAVVSLVV--GANKLYSGSMD--------NSIRVWNLE-TL---QCIQTLTEHTSVVMSLLCW--  322 (393)
Q Consensus       260 ~~~~~~~~~~~-~~~~~v~~l~~--~~~~l~sg~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~v~~l~~~--  322 (393)
                      .    . ..+. .+...+..++|  ++++|+..+.+        ..|++||+. ++   +.......|...+..+.|+  
T Consensus       178 ~----~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spd  252 (662)
T 3azo_A          178 A----V-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPD  252 (662)
T ss_dssp             G----S-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTT
T ss_pred             c----e-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCC
Confidence            2    1 2233 33445555555  56788877644        379999998 56   4444444557888999998  


Q ss_pred             CCEEEEEeCCC--cEEEEEcCCCcceEEEEeecCCc-------cEEEEEeeeCCCCCcEEEEEeCCCeEEEE--eCCcee
Q 016224          323 DQFLLSCSLDK--TIKVWFATDSGNLEVTYTHNEEH-------GVLALCGMPDSEGKPVLLCSCNDNSVRFY--DLPSVI  391 (393)
Q Consensus       323 ~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~l~s~s~dg~I~iw--d~~s~~  391 (393)
                      +++++++..++  .|.+||+.+++ ...+..+....       .+..+.++++.   +++++++. +.++||  |+.+++
T Consensus       253 g~l~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~p~w~~~~~~~~~~~~~---~~~~~~~~-~~~~l~~~d~~~~~  327 (662)
T 3azo_A          253 GSLIVATDRTGWWNLHRVDPATGA-ATQLCRREEEFAGPLWTPGMRWFAPLANG---LIAVVHGK-GAAVLGILDPESGE  327 (662)
T ss_dssp             SCEEEEECTTSSCEEEEECTTTCC-EEESSCCSSBSSCCCCSTTCCSEEECTTS---CEEEEEBS-SSCEEEEEETTTTE
T ss_pred             CeEEEEECCCCCeEEEEEECCCCc-eeecccccccccCccccccCceEeEeCCC---EEEEEEEc-CccEEEEEECCCCc
Confidence            66778888888  55566654443 33332222211       03345665544   48889888 999999  655543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.37  E-value=1.5e-09  Score=98.42  Aligned_cols=219  Identities=12%  Similarity=0.041  Sum_probs=143.8

Q ss_pred             ceEEeeEecCc-EE-EecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC----CcEEEEECCCCeE
Q 016224          111 DILCRNWVQGN-CM-YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD----ETVRVWDCASGQC  184 (393)
Q Consensus       111 ~i~c~~~~~~~-~~-~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d----g~v~iwd~~~~~~  184 (393)
                      ...++.|++++ ++ ++..++.|.+||..++ +.......+...+.+++++++++++++...+    +.|.+||.++++.
T Consensus        46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~  124 (333)
T 2dg1_A           46 QLEGLNFDRQGQLFLLDVFEGNIFKINPETK-EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  124 (333)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTC-CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             cccCcEECCCCCEEEEECCCCEEEEEeCCCC-cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE
Confidence            45778888664 44 4678899999999887 5544444577889999999999988877666    6899999988776


Q ss_pred             EEEEec---CCceEE--EEeCCCEEEEEcC-------CeEEEEECCCCceeeecCCCCcEEEEEEeCC--EE-EEEeCCC
Q 016224          185 AGVINL---GGEVGC--MISEGPWIFIGVT-------NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGTQDG  249 (393)
Q Consensus       185 ~~~~~~---~~~~~~--~~~~~~~l~~~~~-------~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~~~~dg  249 (393)
                      ...+..   ...+..  +.+++.++++...       +.|..++..+++...+......+..++++++  .| ++...++
T Consensus       125 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~  204 (333)
T 2dg1_A          125 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTAN  204 (333)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred             EEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCC
Confidence            544431   122333  3357777776643       4677777766555544444456789999987  45 4455688


Q ss_pred             cEEEEEeccCCccccC-----ceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCcc------ce
Q 016224          250 AILAWKFNVTTNCFEP-----AASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTS------VV  316 (393)
Q Consensus       250 ~I~vwd~~~~~~~~~~-----~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~------~v  316 (393)
                      .|.+||+.........     ...+.++ ..+..++++  ++++++...++.|.+||. +++.+..+..+..      .+
T Consensus       205 ~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~  282 (333)
T 2dg1_A          205 RLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRS  282 (333)
T ss_dssp             EEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBC
T ss_pred             eEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCc
Confidence            9999999642111110     0111122 345667775  556666667889999998 5677777754433      57


Q ss_pred             EEEEEc--CCEEEEEeCC
Q 016224          317 MSLLCW--DQFLLSCSLD  332 (393)
Q Consensus       317 ~~l~~~--~~~l~s~s~d  332 (393)
                      .+++++  ++.|+.++.+
T Consensus       283 ~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          283 THPQFIPGTNQLIICSND  300 (333)
T ss_dssp             CEEEECTTSCEEEEEEEC
T ss_pred             ceEEECCCCCEEEEEeCc
Confidence            888886  4566655554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.37  E-value=2.2e-10  Score=100.61  Aligned_cols=231  Identities=12%  Similarity=0.020  Sum_probs=147.8

Q ss_pred             CEEEEEecCCCCEEE-EEeCCCcEEEEECCCCeEEEEEecC-Cce--EEEEeCCCEEEEEcCCeEEEEECCCCceeeec-
Q 016224          152 VVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGVINLG-GEV--GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS-  226 (393)
Q Consensus       152 ~I~~i~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~-~~~--~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~-  226 (393)
                      ...+|++++++++++ +...++.|.+||..+.......... ..+  ..+.+++.++++..++.|.+|+........+. 
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~  104 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF  104 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeec
Confidence            778999999998776 4467889999997665432211111 122  23335677666666779999998876654333 


Q ss_pred             CCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCC
Q 016224          227 GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLET  302 (393)
Q Consensus       227 ~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~  302 (393)
                      .....+..++++++  ++++...++.|.+|+......    ..........+..++++  ++++++...++.|.+||...
T Consensus       105 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~  180 (270)
T 1rwi_B          105 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  180 (270)
T ss_dssp             CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC----EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee----EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence            23367899999877  566666788999996543321    11111122234556665  56666666788999999987


Q ss_pred             cceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCC
Q 016224          303 LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN  380 (393)
Q Consensus       303 ~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg  380 (393)
                      .........+......++++  +.++++...++.|.+||....... . ...........+++.+++.   ++++...++
T Consensus       181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~-~-~~~~~~~~p~~i~~~~~g~---l~v~~~~~~  255 (270)
T 1rwi_B          181 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-V-LPFTGLNTPLAVAVDSDRT---VYVADRGND  255 (270)
T ss_dssp             CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE-E-CCCCSCSCEEEEEECTTCC---EEEEEGGGT
T ss_pred             CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce-e-eccCCCCCceeEEECCCCC---EEEEECCCC
Confidence            66544333344567888887  455666666889999998654322 2 1112223477888876543   888888899


Q ss_pred             eEEEEeCCcee
Q 016224          381 SVRFYDLPSVI  391 (393)
Q Consensus       381 ~I~iwd~~s~~  391 (393)
                      .|+++++...+
T Consensus       256 ~v~~~~~~~~~  266 (270)
T 1rwi_B          256 RVVKLTSLEHH  266 (270)
T ss_dssp             EEEEECCCGGG
T ss_pred             EEEEEcCCCcc
Confidence            99999987654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.35  E-value=9.7e-10  Score=98.04  Aligned_cols=234  Identities=12%  Similarity=0.042  Sum_probs=147.7

Q ss_pred             EEEEecCCcCCEEEEEecCCCC-EEEEEeCCCcEEEEECCCCeEEEEEecC-CceEEEE--eCCCEEEEEc-CCeEEEEE
Q 016224          142 LLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQCAGVINLG-GEVGCMI--SEGPWIFIGV-TNFVKAWN  216 (393)
Q Consensus       142 ~~~~l~~h~~~I~~i~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~--~~~~~l~~~~-~~~i~v~d  216 (393)
                      .+..+..+.....+++|+|+++ +++++..++.|..||..++  ...+... ..+..+.  +++.++++.. ++.|.+||
T Consensus        19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d   96 (296)
T 3e5z_A           19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR   96 (296)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred             cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence            3345556677888999999998 7788888999999999887  4444433 3343333  5778777764 57999999


Q ss_pred             CCCCceeeecCC-----CCcEEEEEEeCC--EEEE----Ee-------------CCCcEEEEEeccCCccccCceeecCc
Q 016224          217 TQTNTDLSLSGP-----VGQVYAMAVGND--LLFA----GT-------------QDGAILAWKFNVTTNCFEPAASLKGH  272 (393)
Q Consensus       217 ~~~~~~~~~~~~-----~~~v~~l~~~~~--~l~~----~~-------------~dg~I~vwd~~~~~~~~~~~~~~~~~  272 (393)
                      ..+++...+...     ...+..++++++  ++++    ++             ..+.|..++.. +    + ...+..+
T Consensus        97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g----~-~~~~~~~  170 (296)
T 3e5z_A           97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G----T-LSAPIRD  170 (296)
T ss_dssp             STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S----C-EEEEECC
T ss_pred             CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C----C-EEEeecC
Confidence            988776533221     234567889887  5555    22             12345555433 2    1 1222334


Q ss_pred             eeeEEEEEEc--CCEEEEecCCCcEEEeeCC-Ccce---eeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCc
Q 016224          273 SLAVVSLVVG--ANKLYSGSMDNSIRVWNLE-TLQC---IQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSG  344 (393)
Q Consensus       273 ~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~-~~~~---~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~  344 (393)
                      ......++++  ++.+++.+.++.|.+||+. +++.   ...+..+...+..++++  ++++++.  ++.|.+||.. ++
T Consensus       171 ~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~  247 (296)
T 3e5z_A          171 RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD  247 (296)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC
T ss_pred             CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC
Confidence            4445667775  5677888888999999987 4554   33333344455677887  5544444  8899999985 55


Q ss_pred             ceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          345 NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       345 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      .+..+..+..   +.+++|.  ++++..|++++.+ .+..+++.+.+|
T Consensus       248 ~~~~~~~~~~---~~~~~f~--~~d~~~L~v~t~~-~l~~~~~~~~~~  289 (296)
T 3e5z_A          248 ELGRVLTPQT---TSNLCFG--GPEGRTLYMTVST-EFWSIETNVRGL  289 (296)
T ss_dssp             EEEEEECSSC---CCEEEEE--STTSCEEEEEETT-EEEEEECSCCBC
T ss_pred             EEEEEECCCC---ceeEEEE--CCCCCEEEEEcCC-eEEEEEcccccc
Confidence            5444443322   6667774  2233377777765 466667666543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.32  E-value=5.4e-10  Score=112.40  Aligned_cols=229  Identities=11%  Similarity=0.060  Sum_probs=147.4

Q ss_pred             ceEEeeEecCc--EEEecC-C----CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCc----------
Q 016224          111 DILCRNWVQGN--CMYGEK-C----KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET----------  173 (393)
Q Consensus       111 ~i~c~~~~~~~--~~~g~~-d----g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~----------  173 (393)
                      .+....|++++  ++++.. .    ..|++||+.++ +.+.....+ ..+..++|+||++.|+.++.++.          
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg-~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~  203 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA-KELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT-EEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC-CCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccc
Confidence            57788999885  333222 2    28999999998 554432222 22667999999999999988876          


Q ss_pred             ------EEEEECCCCeE--EEEEecC--Cc---eEEEEeCCCEEEEE-c-----CCeEEEEECCC------C--ceeeec
Q 016224          174 ------VRVWDCASGQC--AGVINLG--GE---VGCMISEGPWIFIG-V-----TNFVKAWNTQT------N--TDLSLS  226 (393)
Q Consensus       174 ------v~iwd~~~~~~--~~~~~~~--~~---~~~~~~~~~~l~~~-~-----~~~i~v~d~~~------~--~~~~~~  226 (393)
                            |++|++.+++.  ...+...  ..   ...+.+++++|+.. .     +..|.+||+.+      +  ....+.
T Consensus       204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~  283 (710)
T 2xdw_A          204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI  283 (710)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred             cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee
Confidence                  99999988763  2233322  11   23455788887764 2     56899999986      4  344555


Q ss_pred             CCCCcEEEEEEeC--CEEEEEeC-C---CcEEEEEeccCCccccCceeecCcee--eEEEEEEc-CC-EEEEecCCC--c
Q 016224          227 GPVGQVYAMAVGN--DLLFAGTQ-D---GAILAWKFNVTTNCFEPAASLKGHSL--AVVSLVVG-AN-KLYSGSMDN--S  294 (393)
Q Consensus       227 ~~~~~v~~l~~~~--~~l~~~~~-d---g~I~vwd~~~~~~~~~~~~~~~~~~~--~v~~l~~~-~~-~l~sg~~dg--~  294 (393)
                      .+...+... +++  +.|+..+. +   +.|.+||+.....  .....+..|..  .+..+.+. ++ ++++...|+  .
T Consensus       284 ~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~  360 (710)
T 2xdw_A          284 DNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEE--SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (710)
T ss_dssp             CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG--GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             CCCCcEEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc--ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence            555554442 443  44444443 2   3699999876531  11233333433  56667775 44 566777777  4


Q ss_pred             EEEeeCCCcceeeEeccCccceEEEEEc--CCEEE-EEe---CCCcEEEEEcCCCc
Q 016224          295 IRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLL-SCS---LDKTIKVWFATDSG  344 (393)
Q Consensus       295 i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~-s~s---~dg~i~iwd~~~~~  344 (393)
                      |.+||+.+++.+..+..+...+..+.++  ++.++ +.+   ..++|.+||+.+++
T Consensus       361 l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          361 LQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            6677887788888888787778888876  44443 333   24789999997665

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.32  E-value=2.4e-09  Score=99.90  Aligned_cols=255  Identities=10%  Similarity=0.039  Sum_probs=163.9

Q ss_pred             CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe----------CCCcEEEEECCCCeEEEEEecC-------
Q 016224          129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS----------KDETVRVWDCASGQCAGVINLG-------  191 (393)
Q Consensus       129 g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~-------  191 (393)
                      +.|.++|..+. +.+.++..-..+  .++++||+++|+.+.          .++.|.++|..+++.+..+...       
T Consensus        99 ~~VsVID~~t~-~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~  175 (426)
T 3c75_H           99 TQQFVIDGSTG-RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV  175 (426)
T ss_dssp             EEEEEEETTTT-EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred             CeEEEEECCCC-EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence            79999999998 888888765566  899999999998876          3679999999999999988764       


Q ss_pred             ---CceEEEEeCCCEEEEEc---CCeEEEEECCCCceeeecCCCCcEEEEEE-eCCEEEEEeCCCcEEEEEeccCCcccc
Q 016224          192 ---GEVGCMISEGPWIFIGV---TNFVKAWNTQTNTDLSLSGPVGQVYAMAV-GNDLLFAGTQDGAILAWKFNVTTNCFE  264 (393)
Q Consensus       192 ---~~~~~~~~~~~~l~~~~---~~~i~v~d~~~~~~~~~~~~~~~v~~l~~-~~~~l~~~~~dg~I~vwd~~~~~~~~~  264 (393)
                         ..-..+.+++++++++.   ++.|.++|+.+.+.+........ ..+.. ....+++.+.||++.+.++........
T Consensus       176 g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~  254 (426)
T 3c75_H          176 GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIFPASPTVFYMNCRDGSLARVDFADGETKVT  254 (426)
T ss_dssp             SCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred             CCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence               12345667999988863   46899999999988732222222 12222 223677778899998888843321100


Q ss_pred             CceeecCceee---EEEEEEcCCEEEEecCCCcEEEeeCCCcce--eeEecc------------CccceEEEEEcCCEEE
Q 016224          265 PAASLKGHSLA---VVSLVVGANKLYSGSMDNSIRVWNLETLQC--IQTLTE------------HTSVVMSLLCWDQFLL  327 (393)
Q Consensus       265 ~~~~~~~~~~~---v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~--~~~~~~------------~~~~v~~l~~~~~~l~  327 (393)
                      ....+.....+   ...+..++..++.....+.|.+.|+.....  +..+..            .......+..+++.++
T Consensus       255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rly  334 (426)
T 3c75_H          255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIY  334 (426)
T ss_dssp             ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEE
T ss_pred             eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEE
Confidence            00001100111   112233456666666788999999865432  121110            0001123333356555


Q ss_pred             EEeC----------CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe-CCCeEEEEeCCceee
Q 016224          328 SCSL----------DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDLPSVII  392 (393)
Q Consensus       328 s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s-~dg~I~iwd~~s~~l  392 (393)
                      +...          ++.|.++|+.+.+.+..+....   ....+.++|++  +.++++.. .++.|.++|+.++++
T Consensus       335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~---~P~gia~spDg--~~~lyv~n~~s~~VsVID~~t~kv  405 (426)
T 3c75_H          335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH---EIDSINVSQDA--EPLLYALSAGTQTLHIYDAATGEE  405 (426)
T ss_dssp             EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE---EECEEEECCSS--SCEEEEEETTTTEEEEEETTTCCE
T ss_pred             EEecccccccccCCCCEEEEEECCCCeEEEEEECCC---CcCeEEEccCC--CEEEEEEcCCCCeEEEEECCCCCE
Confidence            5432          3579999999988877775433   36677787653  32666666 599999999999875

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.30  E-value=6.8e-10  Score=97.40  Aligned_cols=226  Identities=8%  Similarity=-0.033  Sum_probs=143.5

Q ss_pred             eEEeeEecC-cEEE-e-cCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 016224          112 ILCRNWVQG-NCMY-G-EKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI  188 (393)
Q Consensus       112 i~c~~~~~~-~~~~-g-~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~  188 (393)
                      ..++++.++ .++. + ..++.|.+|+..+. ........+...+.+|+++++++++++.. ++.|.+||....... .+
T Consensus        26 p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~  102 (270)
T 1rwi_B           26 PSGVAVDSAGNVYVTSEGMYGRVVKLATGST-GTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL  102 (270)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred             ccceEECCCCCEEEEccCCCCcEEEecCCCc-ccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence            356677655 4455 5 56789999997665 22222223445788999999998666555 889999998765433 22


Q ss_pred             ecC--CceEEE--EeCCCEEEEE-cCCeEEEEECCCCceee-ecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCC
Q 016224          189 NLG--GEVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTDLS-LSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTT  260 (393)
Q Consensus       189 ~~~--~~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~~~-~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~  260 (393)
                      ...  ..+..+  .+++.++++. .++.|.+|+..+..... .......+..++++++  ++++...++.|.+||.....
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~  182 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  182 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence            211  233333  2467766665 56789999766554432 2223346788999876  56666667899999977643


Q ss_pred             ccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEE
Q 016224          261 NCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIK  336 (393)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~  336 (393)
                      .    ......+...+..++++  +.++++...++.|.+||............+...+.+++++  ++++++...++.|+
T Consensus       183 ~----~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~  258 (270)
T 1rwi_B          183 Q----VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV  258 (270)
T ss_dssp             E----EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             e----EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence            1    11111222456777776  4456666678899999987654433222333567888887  66778888899999


Q ss_pred             EEEcCCCc
Q 016224          337 VWFATDSG  344 (393)
Q Consensus       337 iwd~~~~~  344 (393)
                      ++++...+
T Consensus       259 ~~~~~~~~  266 (270)
T 1rwi_B          259 KLTSLEHH  266 (270)
T ss_dssp             EECCCGGG
T ss_pred             EEcCCCcc
Confidence            99986544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.29  E-value=3.9e-09  Score=94.61  Aligned_cols=232  Identities=9%  Similarity=0.063  Sum_probs=143.3

Q ss_pred             cCCcCCEEEEEecCCCCEEEE-------EeCCCcEEEEECCCCeEEEEEe-----cCCceEEEE--eC-CCEEEEEcCCe
Q 016224          147 EGHQKVVSGITLPSGSDKLYS-------GSKDETVRVWDCASGQCAGVIN-----LGGEVGCMI--SE-GPWIFIGVTNF  211 (393)
Q Consensus       147 ~~h~~~I~~i~~s~~~~~l~s-------~s~dg~v~iwd~~~~~~~~~~~-----~~~~~~~~~--~~-~~~l~~~~~~~  211 (393)
                      ...-....+++|+++++++++       ...++.|.+||..+++......     ....+..+.  ++ +.++++...+.
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~   93 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLG   93 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCC
Confidence            334456688999999988877       5778899999988887654332     112233333  45 55666666668


Q ss_pred             EEEEECCCCceeee-cC-----CCCcEEEEEEeCC--EEEEEeCC---------------CcEEEEEeccCCccccCcee
Q 016224          212 VKAWNTQTNTDLSL-SG-----PVGQVYAMAVGND--LLFAGTQD---------------GAILAWKFNVTTNCFEPAAS  268 (393)
Q Consensus       212 i~v~d~~~~~~~~~-~~-----~~~~v~~l~~~~~--~l~~~~~d---------------g~I~vwd~~~~~~~~~~~~~  268 (393)
                      |.+||.. ++...+ ..     ....+.+++++++  ++++...+               +.|..||.. +    +.. .
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g----~~~-~  166 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G----QMI-Q  166 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S----CEE-E
T ss_pred             EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C----CEE-E
Confidence            9999998 665544 21     1235789999887  44444443               456666543 2    111 1


Q ss_pred             ecCceeeEEEEEEc----C--CEEE-EecCCCcEEEeeCC-Ccc-----eeeEeccCc-cceEEEEEc--CCEEEEEeCC
Q 016224          269 LKGHSLAVVSLVVG----A--NKLY-SGSMDNSIRVWNLE-TLQ-----CIQTLTEHT-SVVMSLLCW--DQFLLSCSLD  332 (393)
Q Consensus       269 ~~~~~~~v~~l~~~----~--~~l~-sg~~dg~i~iwd~~-~~~-----~~~~~~~~~-~~v~~l~~~--~~~l~s~s~d  332 (393)
                      +..+......++++    +  +.|+ +...++.|.+||+. +++     ....+..+. .....++++  ++++++...+
T Consensus       167 ~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~  246 (314)
T 1pjx_A          167 VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS  246 (314)
T ss_dssp             EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred             eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC
Confidence            11122233455555    3  3454 44568899999976 443     233344343 556778887  6677777778


Q ss_pred             CcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          333 KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       333 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      +.|.+||..+++....+..+.  ..+.++++.+++.  .++++...++.|..|++..
T Consensus       247 ~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~--~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          247 SHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTK--TIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSS--EEEEEETTTTEEEEEECSS
T ss_pred             CEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCC--EEEEEeCCCCeEEEEeCCC
Confidence            999999987565555444332  3577888855432  2445555678999999864

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.28  E-value=5.4e-10  Score=111.35  Aligned_cols=264  Identities=12%  Similarity=0.103  Sum_probs=169.9

Q ss_pred             ecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCC-----------EEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224          118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV-----------VSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG  186 (393)
Q Consensus       118 ~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~-----------I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  186 (393)
                      ..+.+++++.++.|+.+|..++ +.+-++......           -..+++  ++..|+.++.|+.|..+|..+|+.+.
T Consensus        76 ~~g~vyv~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W  152 (677)
T 1kb0_A           76 VDGIMYVSASWSVVHAIDTRTG-NRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVW  152 (677)
T ss_dssp             ETTEEEEECGGGCEEEEETTTT-EEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ECCEEEEECCCCeEEEEECCCC-cEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence            4566777888899999999999 777666543210           112233  46689999999999999999999999


Q ss_pred             EEecC-C-----ce--EEEEeCCCEEEEEc------CCeEEEEECCCCcee-eecCCCC---------------------
Q 016224          187 VINLG-G-----EV--GCMISEGPWIFIGV------TNFVKAWNTQTNTDL-SLSGPVG---------------------  230 (393)
Q Consensus       187 ~~~~~-~-----~~--~~~~~~~~~l~~~~------~~~i~v~d~~~~~~~-~~~~~~~---------------------  230 (393)
                      .+... .     .+  ..+..++.+++...      ++.|+.+|..+++.+ .+.....                     
T Consensus       153 ~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~  232 (677)
T 1kb0_A          153 HQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS  232 (677)
T ss_dssp             EEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred             eecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence            88865 2     11  11223444444332      689999999999977 3322110                     


Q ss_pred             -----------cEEEEEEeCC--EEEEEeCCC-------------------cEEEEEeccCCccccCceeecCc------
Q 016224          231 -----------QVYAMAVGND--LLFAGTQDG-------------------AILAWKFNVTTNCFEPAASLKGH------  272 (393)
Q Consensus       231 -----------~v~~l~~~~~--~l~~~~~dg-------------------~I~vwd~~~~~~~~~~~~~~~~~------  272 (393)
                                 ....++++++  ++++++.++                   .|..+|..++...+..  ....|      
T Consensus       233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~--~~~~~d~wd~~  310 (677)
T 1kb0_A          233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHY--QETPGDNWDYT  310 (677)
T ss_dssp             GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE--ESSTTCCSCCC
T ss_pred             CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEE--ecCCCcccccc
Confidence                       0124667665  777777664                   4888998887543221  11111      


Q ss_pred             ---eeeEEEEEEcC---CEEEEecCCCcEEEeeCCCcceeeEeccCcc-----------ce-------------------
Q 016224          273 ---SLAVVSLVVGA---NKLYSGSMDNSIRVWNLETLQCIQTLTEHTS-----------VV-------------------  316 (393)
Q Consensus       273 ---~~~v~~l~~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-----------~v-------------------  316 (393)
                         ...+..+..++   ..++.++.+|.|+++|.++++++..+.....           ++                   
T Consensus       311 ~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~  390 (677)
T 1kb0_A          311 STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPY  390 (677)
T ss_dssp             CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTT
T ss_pred             cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcc
Confidence               12233344566   5799999999999999999999876652210           01                   


Q ss_pred             -----EEEEEc--CCEEEEEeC-------------------------------------------CCcEEEEEcCCCcce
Q 016224          317 -----MSLLCW--DQFLLSCSL-------------------------------------------DKTIKVWFATDSGNL  346 (393)
Q Consensus       317 -----~~l~~~--~~~l~s~s~-------------------------------------------dg~i~iwd~~~~~~~  346 (393)
                           ..++++  ..++++...                                           .+.|..||+.+++.+
T Consensus       391 G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~  470 (677)
T 1kb0_A          391 GAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA  470 (677)
T ss_dssp             CSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE
T ss_pred             cccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE
Confidence                 134555  345555432                                           278999999988776


Q ss_pred             EEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          347 EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       347 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      .......   ......+...+.   +++.++.||.|++||+.++++
T Consensus       471 W~~~~~~---~~~~g~~~~~g~---~v~~g~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          471 WSVEHVS---PWNGGTLTTAGN---VVFQGTADGRLVAYHAATGEK  510 (677)
T ss_dssp             EEEEESS---SCCCCEEEETTT---EEEEECTTSEEEEEETTTCCE
T ss_pred             eecCCCC---CCcCcceEeCCC---EEEEECCCCcEEEEECCCCce
Confidence            5554321   122222333333   788889999999999999875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.27  E-value=4.1e-08  Score=87.04  Aligned_cols=231  Identities=11%  Similarity=0.081  Sum_probs=149.1

Q ss_pred             ecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe--cCCceEEEE--eCCCEEEEEc-CCeEEEEECCCC
Q 016224          146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN--LGGEVGCMI--SEGPWIFIGV-TNFVKAWNTQTN  220 (393)
Q Consensus       146 l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~~~~~~--~~~~~l~~~~-~~~i~v~d~~~~  220 (393)
                      +..+...+.+|+++++++++++...++.|.+||.. ++......  ....+..+.  +++.+.++.. ++.|..|+.. +
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g   87 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G   87 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence            44456789999999999977776668899999988 55433221  123343333  4677777664 6789999986 3


Q ss_pred             ceeee--cCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCc
Q 016224          221 TDLSL--SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNS  294 (393)
Q Consensus       221 ~~~~~--~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~  294 (393)
                      +...+  ......+..++++++  ++++...++.|.+||. .+..  . ..........+..++++  ++++++...++.
T Consensus        88 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~--~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~  163 (299)
T 2z2n_A           88 IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI--R-EYELPNKGSYPSFITLGSDNALWFTENQNNA  163 (299)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE--E-EEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred             cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE--E-EecCCCCCCCCceEEEcCCCCEEEEeCCCCE
Confidence            33322  234567899999876  5555556789999987 3321  1 11122233456777776  446666666789


Q ss_pred             EEEeeCCCcceeeE-eccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCc
Q 016224          295 IRVWNLETLQCIQT-LTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP  371 (393)
Q Consensus       295 i~iwd~~~~~~~~~-~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  371 (393)
                      |..||. +++.... +..+...+..++++  +.++++...++.|.+||. ++. +..+........+..+++.+++.   
T Consensus       164 i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~-~~~~~~~~~~~~~~~i~~~~~g~---  237 (299)
T 2z2n_A          164 IGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE-ITEFKIPTPNARPHAITAGAGID---  237 (299)
T ss_dssp             EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC-EEEEECSSTTCCEEEEEECSTTC---
T ss_pred             EEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc-EEEEECCCCCCCceeEEECCCCC---
Confidence            999999 6665432 33344567788887  556666666889999998 444 33332222234577787766543   


Q ss_pred             EEEEEeCCCeEEEEeCC
Q 016224          372 VLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       372 ~l~s~s~dg~I~iwd~~  388 (393)
                      ++++...++.|.+||..
T Consensus       238 l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          238 LWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             EEEEETTTTEEEEEETT
T ss_pred             EEEeccCCceEEEECCC
Confidence            66665577899999973

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.26  E-value=1.2e-08  Score=91.51  Aligned_cols=229  Identities=9%  Similarity=-0.000  Sum_probs=146.2

Q ss_pred             ceEEeeEecC-cEEEe--------cCCCeEEEEECCCCcEEEEEec----CCcCCEEEEEecCC-CCEEEEEeCCCcEEE
Q 016224          111 DILCRNWVQG-NCMYG--------EKCKFLHSWTVGDGFKLLTQLE----GHQKVVSGITLPSG-SDKLYSGSKDETVRV  176 (393)
Q Consensus       111 ~i~c~~~~~~-~~~~g--------~~dg~i~vwd~~~~~~~~~~l~----~h~~~I~~i~~s~~-~~~l~s~s~dg~v~i  176 (393)
                      ...+++|.++ .++.+        ..++.|.+||..++ +......    ++...+.+++++++ +++++ ++....|.+
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~~l~~   96 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG-KKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRLGLLV   96 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC-CEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTTEEEE
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC-cEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCCCEEE
Confidence            3456777755 45545        56889999998777 3332221    25678999999999 65444 444557999


Q ss_pred             EECCCCeEEEE-EecC-----Cce--EEEEeCCCEEEEEcC----------------CeEEEEECCCCceeeecCCCCcE
Q 016224          177 WDCASGQCAGV-INLG-----GEV--GCMISEGPWIFIGVT----------------NFVKAWNTQTNTDLSLSGPVGQV  232 (393)
Q Consensus       177 wd~~~~~~~~~-~~~~-----~~~--~~~~~~~~~l~~~~~----------------~~i~v~d~~~~~~~~~~~~~~~v  232 (393)
                      ||.+ ++.... ....     ..+  ..+.+++.+.++...                +.|..++.. ++...+.......
T Consensus        97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~  174 (314)
T 1pjx_A           97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFP  174 (314)
T ss_dssp             EETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSE
T ss_pred             EeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCc
Confidence            9998 765433 2211     112  223356777776532                467777766 5544443444556


Q ss_pred             EEEEEe----CC--EEEE-EeCCCcEEEEEecc-CCcc-ccCceeecCce-eeEEEEEEc--CCEEEEecCCCcEEEeeC
Q 016224          233 YAMAVG----ND--LLFA-GTQDGAILAWKFNV-TTNC-FEPAASLKGHS-LAVVSLVVG--ANKLYSGSMDNSIRVWNL  300 (393)
Q Consensus       233 ~~l~~~----~~--~l~~-~~~dg~I~vwd~~~-~~~~-~~~~~~~~~~~-~~v~~l~~~--~~~l~sg~~dg~i~iwd~  300 (393)
                      ..++++    ++  .|++ ...++.|.+||+.. +... ......+..+. .....++++  ++++++...++.|.+||.
T Consensus       175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~  254 (314)
T 1pjx_A          175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcC
Confidence            888998    87  4444 45678999999862 2110 01122233332 445667775  556666667889999999


Q ss_pred             CCcceeeEeccCccceEEEEEc--CCEE-EEEeCCCcEEEEEcCCC
Q 016224          301 ETLQCIQTLTEHTSVVMSLLCW--DQFL-LSCSLDKTIKVWFATDS  343 (393)
Q Consensus       301 ~~~~~~~~~~~~~~~v~~l~~~--~~~l-~s~s~dg~i~iwd~~~~  343 (393)
                      ++++.+..+..+...+.+++++  ++.| ++...++.|..|++...
T Consensus       255 ~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            8888877777777788999986  5545 45556788999998643

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.25  E-value=4.9e-10  Score=112.41  Aligned_cols=232  Identities=10%  Similarity=-0.012  Sum_probs=145.2

Q ss_pred             ecceEEeeEecCcEE-E------ecCCCeEEEEECCCCcEEEEEecCCcCCE--EEEEecCCCCEEEEEeCCCc------
Q 016224          109 KTDILCRNWVQGNCM-Y------GEKCKFLHSWTVGDGFKLLTQLEGHQKVV--SGITLPSGSDKLYSGSKDET------  173 (393)
Q Consensus       109 ~~~i~c~~~~~~~~~-~------g~~dg~i~vwd~~~~~~~~~~l~~h~~~I--~~i~~s~~~~~l~s~s~dg~------  173 (393)
                      ...+....|++++.. +      |+.+..|++||+.++ +.+.  ..+...+  ..++|+||++.|+.++.|..      
T Consensus       120 ~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg-~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          120 TVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG-EWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             CEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC-CBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred             CEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC-CCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence            346788899988532 2      445679999999988 4320  1122223  67899999999999998876      


Q ss_pred             -------EEEEECCCCeE--EEEEecC---Cce--EEEEeCCCEEEEE-cCC----eEEEEECCCCceeeecCCCCcEEE
Q 016224          174 -------VRVWDCASGQC--AGVINLG---GEV--GCMISEGPWIFIG-VTN----FVKAWNTQTNTDLSLSGPVGQVYA  234 (393)
Q Consensus       174 -------v~iwd~~~~~~--~~~~~~~---~~~--~~~~~~~~~l~~~-~~~----~i~v~d~~~~~~~~~~~~~~~v~~  234 (393)
                             |++|++.+++.  ...+...   ...  ..+.+++++|+.. .++    .|.+++..+++...+..+...+..
T Consensus       197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~  276 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYE  276 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEE
T ss_pred             cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEE
Confidence                   99999998762  2333322   122  3345688877654 343    677777766666656555555555


Q ss_pred             EEEeCC-EEEEEe---CCCcEEEEEeccCCccccCceeecCc-eeeEEEEEEcCC-EEEEecCCCcEEEeeCC-Ccceee
Q 016224          235 MAVGND-LLFAGT---QDGAILAWKFNVTTNCFEPAASLKGH-SLAVVSLVVGAN-KLYSGSMDNSIRVWNLE-TLQCIQ  307 (393)
Q Consensus       235 l~~~~~-~l~~~~---~dg~I~vwd~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~-~l~sg~~dg~i~iwd~~-~~~~~~  307 (393)
                      ..+... +++...   .++.|.+||+.+.... .....+..+ ...+..+++.++ ++++...|+..+||.+. +++.+.
T Consensus       277 ~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~  355 (695)
T 2bkl_A          277 VHAWKDRFYVLTDEGAPRQRVFEVDPAKPARA-SWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVR  355 (695)
T ss_dssp             EEEETTEEEEEECTTCTTCEEEEEBTTBCSGG-GCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEE
T ss_pred             EEecCCcEEEEECCCCCCCEEEEEeCCCCCcc-CCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeE
Confidence            555444 444433   2578999998765310 011222222 445666777655 67778889988887654 455666


Q ss_pred             EeccC-ccceEEEEEc--CCEEE-EEe---CCCcEEEEEcCCCc
Q 016224          308 TLTEH-TSVVMSLLCW--DQFLL-SCS---LDKTIKVWFATDSG  344 (393)
Q Consensus       308 ~~~~~-~~~v~~l~~~--~~~l~-s~s---~dg~i~iwd~~~~~  344 (393)
                      .+..+ ...+..+.++  ++.++ +.+   ..++|++||+.+++
T Consensus       356 ~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          356 TVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             ECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            66655 5556666665  44444 332   34789999997655

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.24  E-value=1.7e-09  Score=108.00  Aligned_cols=264  Identities=13%  Similarity=0.128  Sum_probs=167.2

Q ss_pred             ecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCC----------E-EEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224          118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV----------V-SGITLPSGSDKLYSGSKDETVRVWDCASGQCAG  186 (393)
Q Consensus       118 ~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~----------I-~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  186 (393)
                      ..+.+++++.++.|+.+|..++ +.+-++..+...          + ..+++  .+..|+.++.|+.|..+|..+|+.+.
T Consensus        69 ~~g~vyv~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W  145 (689)
T 1yiq_A           69 VDGVMYTTGPFSVVYALDARDG-RLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAW  145 (689)
T ss_dssp             ETTEEEEECGGGCEEEEETTTC-CEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCeEEEEECCCC-ceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEee
Confidence            4566778888999999999999 666666543221          0 11222  35688999999999999999999998


Q ss_pred             EEecC-C-----ce--EEEEeCCCEEEEE------cCCeEEEEECCCCcee-eecCC--C--------------------
Q 016224          187 VINLG-G-----EV--GCMISEGPWIFIG------VTNFVKAWNTQTNTDL-SLSGP--V--------------------  229 (393)
Q Consensus       187 ~~~~~-~-----~~--~~~~~~~~~l~~~------~~~~i~v~d~~~~~~~-~~~~~--~--------------------  229 (393)
                      .+... .     .+  ..+..++.+++..      .++.|..||..+++.+ .+...  .                    
T Consensus       146 ~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~  225 (689)
T 1yiq_A          146 SVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD  225 (689)
T ss_dssp             EEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred             eecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence            88764 1     11  1122344444432      2579999999999976 33210  0                    


Q ss_pred             ---------CcEEEEEEeCC--EEEEEeCCCc-------------------EEEEEeccCCccccCceeecCc-------
Q 016224          230 ---------GQVYAMAVGND--LLFAGTQDGA-------------------ILAWKFNVTTNCFEPAASLKGH-------  272 (393)
Q Consensus       230 ---------~~v~~l~~~~~--~l~~~~~dg~-------------------I~vwd~~~~~~~~~~~~~~~~~-------  272 (393)
                               ..-..++++++  ++++++.++.                   |..+|..++...+...  ...|       
T Consensus       226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~--~~~~d~wd~~~  303 (689)
T 1yiq_A          226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQ--TTPGDAWDYTA  303 (689)
T ss_dssp             THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEE--SSTTCCSCCCC
T ss_pred             eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeee--cCCcccccccC
Confidence                     00124677764  8888887763                   9999999885433211  1111       


Q ss_pred             ee--eEEEEEEcCC---EEEEecCCCcEEEeeCCCcceeeEeccCcc-c-------------------------------
Q 016224          273 SL--AVVSLVVGAN---KLYSGSMDNSIRVWNLETLQCIQTLTEHTS-V-------------------------------  315 (393)
Q Consensus       273 ~~--~v~~l~~~~~---~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-~-------------------------------  315 (393)
                      ..  .+..+..++.   .++.++.+|.++++|.++++++........ .                               
T Consensus       304 ~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p  383 (689)
T 1yiq_A          304 TQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTP  383 (689)
T ss_dssp             CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESS
T ss_pred             CCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCC
Confidence            11  1223445564   789999999999999999998744321110 0                               


Q ss_pred             -------eEEEEEc--CCEEEEEeC---------------------------------------------CCcEEEEEcC
Q 016224          316 -------VMSLLCW--DQFLLSCSL---------------------------------------------DKTIKVWFAT  341 (393)
Q Consensus       316 -------v~~l~~~--~~~l~s~s~---------------------------------------------dg~i~iwd~~  341 (393)
                             -..++++  ..++++...                                             +|.|+.||+.
T Consensus       384 ~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~  463 (689)
T 1yiq_A          384 AFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPV  463 (689)
T ss_dssp             CTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETT
T ss_pred             CcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECC
Confidence                   0113444  234444321                                             3789999999


Q ss_pred             CCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          342 DSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       342 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      +++.+.....+..   ...-.+...+.   +++.++.||.|+.||.++|++
T Consensus       464 tG~~~W~~~~~~~---~~~g~~~tagg---lvf~gt~dg~l~a~D~~tG~~  508 (689)
T 1yiq_A          464 KQQAAWEVPYVTI---FNGGTLSTAGN---LVFEGSADGRVIAYAADTGEK  508 (689)
T ss_dssp             TTEEEEEEEESSS---CCCCEEEETTT---EEEEECTTSEEEEEETTTCCE
T ss_pred             CCCeEeEccCCCC---ccCccceECCC---EEEEECCCCcEEEEECCCCcc
Confidence            8887666544321   11112222222   888999999999999999986

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.23  E-value=1.2e-07  Score=84.06  Aligned_cols=262  Identities=12%  Similarity=0.056  Sum_probs=162.4

Q ss_pred             ceEEeeEecC-cEEEec-CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 016224          111 DILCRNWVQG-NCMYGE-KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI  188 (393)
Q Consensus       111 ~i~c~~~~~~-~~~~g~-~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~  188 (393)
                      ...++.+.++ .++.+. .++.|.+||.. +......+..+...+.+|++.++++++++...++.|..||.. ++.. .+
T Consensus        21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~   97 (300)
T 2qc5_A           21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EY   97 (300)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EE
T ss_pred             CcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-Ee
Confidence            5567777655 455554 57899999987 522222344445789999999999887777668899999988 6543 33


Q ss_pred             ecC---CceEEEE--eCCCEEEEEc-CCeEEEEECCCCceeee--cCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEecc
Q 016224          189 NLG---GEVGCMI--SEGPWIFIGV-TNFVKAWNTQTNTDLSL--SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV  258 (393)
Q Consensus       189 ~~~---~~~~~~~--~~~~~l~~~~-~~~i~v~d~~~~~~~~~--~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~  258 (393)
                      ...   ..+..+.  +++.+.++.. ++.|..++.. ++...+  ......+..++++++  ++++...++.|..+|. .
T Consensus        98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~  175 (300)
T 2qc5_A           98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T  175 (300)
T ss_dssp             ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred             cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence            322   2333333  4677777664 6789999988 555432  334567899999886  5555555788999987 3


Q ss_pred             CCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeE-eccCccceEEEEEc--CCEEEEEeCCC
Q 016224          259 TTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQT-LTEHTSVVMSLLCW--DQFLLSCSLDK  333 (393)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~--~~~l~s~s~dg  333 (393)
                      +..  . ......+...+..+.++  +++.++....+.|.+||. +++.... +..+...+.+++++  +++.++...++
T Consensus       176 g~~--~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~  251 (300)
T 2qc5_A          176 GKL--E-EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGAN  251 (300)
T ss_dssp             CCE--E-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred             CcE--E-EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCC
Confidence            321  1 11122233456777776  445555556778999998 4544332 33345567888887  45555555678


Q ss_pred             cEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          334 TIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       334 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      .|..||. ++ .+..+........+.++...+++.   +.+ ++.. .|..++..
T Consensus       252 ~i~~~~~-~g-~~~~~~~~~~~~~~~~i~~~~~g~---l~v-~~~~-~i~~~~p~  299 (300)
T 2qc5_A          252 QIGRITN-DN-TIQEYQLQTENAEPHGITFGKDGS---VWF-ALKC-KIGKLNLN  299 (300)
T ss_dssp             EEEEECT-TS-CEEEEECCSTTCCCCCEEECTTSC---EEE-ECSS-EEEEEEEC
T ss_pred             eEEEECC-CC-cEEEEECCccCCccceeEeCCCCC---EEE-EccC-ceEEeCCC
Confidence            9999998 33 333332222223455666655433   444 4444 77777654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.22  E-value=2.1e-09  Score=98.60  Aligned_cols=248  Identities=10%  Similarity=-0.018  Sum_probs=158.9

Q ss_pred             eEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe----------CCCcEEEEECCCCeEEEEEecC--------
Q 016224          130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS----------KDETVRVWDCASGQCAGVINLG--------  191 (393)
Q Consensus       130 ~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~--------  191 (393)
                      .|.++|..++ +.+.++..-..+  .++++||+++|+++.          .++.|.+||+.+++.+.++..+        
T Consensus        47 ~vsvID~~t~-~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g  123 (368)
T 1mda_H           47 ENWVSCAGCG-VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEEEETTTT-EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred             eEEEEECCCC-eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence            8899999998 888888765666  799999999999886          3689999999999999998764        


Q ss_pred             --CceEEEEeCCCEEEEEc---CCeEEE--EECCCCceeeecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEecc-----
Q 016224          192 --GEVGCMISEGPWIFIGV---TNFVKA--WNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNV-----  258 (393)
Q Consensus       192 --~~~~~~~~~~~~l~~~~---~~~i~v--~d~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~-----  258 (393)
                        .....+.+++++++++.   .+.+.+  +|..+  ...+.. .+. ..+..... .+++.+.|+.+.+.|+..     
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v-~~~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~  199 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKS-ASC-FHIHPGAAATHYLGSCPASLAASDLAAAPAAA  199 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEEC-SSC-CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred             CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEEC-CCc-eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence              23456667998888763   357888  88877  222211 111 11222333 666777899998888876     


Q ss_pred             CCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcc--eeeEeccC------------ccceEEEEEcCC
Q 016224          259 TTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQ--CIQTLTEH------------TSVVMSLLCWDQ  324 (393)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~------------~~~v~~l~~~~~  324 (393)
                      +.........+.....+. . ..++..++..+. +.|.+.|+.+..  .+..+...            ......+..+++
T Consensus       200 ~~v~~~~t~~i~vg~~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~  276 (368)
T 1mda_H          200 GIVGAQCTGAQNCSSQAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD  276 (368)
T ss_dssp             EECCCCSCTTSCBCSCCE-E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT
T ss_pred             CeEEEEeeeeeeCCCCcc-c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC
Confidence            211100000011111222 2 444566555556 999999986532  33333211            111123333466


Q ss_pred             EEEEEeC---------CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe-CCCeEEEEeCCceee
Q 016224          325 FLLSCSL---------DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDLPSVII  392 (393)
Q Consensus       325 ~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s-~dg~I~iwd~~s~~l  392 (393)
                      .++.+..         ++.+.++|+.+.+.+..+....   ....+.+++++  ++++++.. .++.|.++|+.++++
T Consensus       277 ~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~---~p~gi~~s~Dg--~~l~va~~~~~~~VsVID~~t~kv  349 (368)
T 1mda_H          277 GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---DSDAIIAAQDG--ASDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---EECEEEECCSS--SCEEEEEETTTTEEEEEESSSCEE
T ss_pred             EEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC---CcceEEECCCC--CEEEEEccCCCCeEEEEECCCCcE
Confidence            6665432         2356699999887766655443   36678888774  34677777 599999999999875

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.20  E-value=7.6e-10  Score=101.87  Aligned_cols=167  Identities=11%  Similarity=0.075  Sum_probs=128.7

Q ss_pred             CEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-----------EEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCC
Q 016224          152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQ-----------CAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTN  220 (393)
Q Consensus       152 ~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~  220 (393)
                      .+..+++++...+|++|+.+ .+++|++.+.+           .......+. +..+..++.+|+++.++.|++||+.+.
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~~~~~l~v~dv~sl  116 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVSTRNALYSLDLEEL  116 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEEESSEEEEEESSST
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEEcCCcEEEEEchhh
Confidence            68899999999999999998 56669865332           223445555 555544899999998899999999876


Q ss_pred             cee-eecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEee
Q 016224          221 TDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWN  299 (393)
Q Consensus       221 ~~~-~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd  299 (393)
                      ... ....+...+.++.+.+..+++++.||.|.+||+.....    .    .+...|.+++|+++-++.|..||++++|+
T Consensus       117 ~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~----~----~~~~~Vs~v~WSpkG~~vg~~dg~i~~~~  188 (388)
T 1xip_A          117 SEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKST----K----QLAQNVTSFDVTNSQLAVLLKDRSFQSFA  188 (388)
T ss_dssp             TCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE----E----EEEESEEEEEECSSEEEEEETTSCEEEEE
T ss_pred             hccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcc----c----cccCCceEEEEcCCceEEEEcCCcEEEEc
Confidence            644 45566677888888776788899999999999987632    1    15568999999988789999999999999


Q ss_pred             CCCcce--eeEe------c---cCccceEEEEEcC--CEEEE
Q 016224          300 LETLQC--IQTL------T---EHTSVVMSLLCWD--QFLLS  328 (393)
Q Consensus       300 ~~~~~~--~~~~------~---~~~~~v~~l~~~~--~~l~s  328 (393)
                      ...++.  ..++      .   +|...|.+|.|.+  .++++
T Consensus       189 ~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          189 WRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             CCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            887775  5566      2   3778899999983  35544

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.18  E-value=7.6e-08  Score=88.82  Aligned_cols=228  Identities=8%  Similarity=-0.022  Sum_probs=145.5

Q ss_pred             EeeEecCc--EEEec----------CCCeEEEEECCCCcEEEEEecCC-------cCCEEEEEecCCCCEEEEEeC--CC
Q 016224          114 CRNWVQGN--CMYGE----------KCKFLHSWTVGDGFKLLTQLEGH-------QKVVSGITLPSGSDKLYSGSK--DE  172 (393)
Q Consensus       114 c~~~~~~~--~~~g~----------~dg~i~vwd~~~~~~~~~~l~~h-------~~~I~~i~~s~~~~~l~s~s~--dg  172 (393)
                      -+.+++++  ++++.          .++.|.+||..+. +.+.++...       ...-..++|+||+++|+.+..  ++
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~-~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~  148 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF-LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP  148 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC-cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCC
Confidence            67777774  23332          3678999999887 666655422       123457899999999999874  57


Q ss_pred             cEEEEECCCCeEEEE-EecCCceEEEEeCCC--EEEEEcCCeEEEEECCCCceeee-c-----CCCCcE-EEEEEeCC--
Q 016224          173 TVRVWDCASGQCAGV-INLGGEVGCMISEGP--WIFIGVTNFVKAWNTQTNTDLSL-S-----GPVGQV-YAMAVGND--  240 (393)
Q Consensus       173 ~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~--~l~~~~~~~i~v~d~~~~~~~~~-~-----~~~~~v-~~l~~~~~--  240 (393)
                      .|.++| .+++.+.. +..+..+. +.+.+.  +++...++.+.+++. +++.... .     ....++ ....+.++  
T Consensus       149 ~v~viD-~t~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  225 (373)
T 2mad_H          149 AVGLVV-QGGSSDDQLLSSPTCYH-IHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSG  225 (373)
T ss_pred             eEEEEE-CCCCEEeEEcCCCceEE-EEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCC
Confidence            899999 99999888 77655432 334332  334457889999999 7765521 1     111111 22333333  


Q ss_pred             EEEEEeCCCcEEEEEeccCCccccCceeec------------CceeeEEEEEEcCCEEEEecC----------CCcEEEe
Q 016224          241 LLFAGTQDGAILAWKFNVTTNCFEPAASLK------------GHSLAVVSLVVGANKLYSGSM----------DNSIRVW  298 (393)
Q Consensus       241 ~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~------------~~~~~v~~l~~~~~~l~sg~~----------dg~i~iw  298 (393)
                      .++..+..+.|.+.|+......  ....+.            ........+..++++++++..          .+.|.++
T Consensus       226 ~~~~~~~~~~v~vid~~~~~~~--v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI  303 (373)
T 2mad_H          226 RIVWPVYSGKILQADISAAGAT--NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             EEEEEcCCceEEEEeccCCcce--EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence            3333347789999998654211  111110            111112344455666666542          3589999


Q ss_pred             eCCCcceeeEeccCccceEEEEEc--CC-EEEEEe-CCCcEEEEEcCCCcceEE
Q 016224          299 NLETLQCIQTLTEHTSVVMSLLCW--DQ-FLLSCS-LDKTIKVWFATDSGNLEV  348 (393)
Q Consensus       299 d~~~~~~~~~~~~~~~~v~~l~~~--~~-~l~s~s-~dg~i~iwd~~~~~~~~~  348 (393)
                      |+.+++.+.++.... ....+.++  ++ +++++. .++.|.+||+.+.+.+..
T Consensus       304 D~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          304 TGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             ECCCCEEEEEEECCC-CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            999999999986433 46777777  66 677776 589999999998877665

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.17  E-value=1.8e-09  Score=99.30  Aligned_cols=169  Identities=12%  Similarity=-0.021  Sum_probs=121.8

Q ss_pred             eEEEEeCCCEEEEEcCCeEEEEECCCCc-----------eeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCcc
Q 016224          194 VGCMISEGPWIFIGVTNFVKAWNTQTNT-----------DLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNC  262 (393)
Q Consensus       194 ~~~~~~~~~~l~~~~~~~i~v~d~~~~~-----------~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~  262 (393)
                      ...+.+...+++++....+.+|++....           ......+.. |+.++|+...|+++ .++.|++||+.+... 
T Consensus        42 lLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~sl~~-  118 (388)
T 1xip_A           42 NLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVS-TRNALYSLDLEELSE-  118 (388)
T ss_dssp             CEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEE-ESSEEEEEESSSTTC-
T ss_pred             EEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEE-cCCcEEEEEchhhhc-
Confidence            4555677888888877788889865433           112233555 99999944588887 889999999987632 


Q ss_pred             ccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCC
Q 016224          263 FEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATD  342 (393)
Q Consensus       263 ~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~  342 (393)
                         ......|...+..+.+.+..+++++.||.|.+||+.+++...    +...|++++|+++-++.|..||++++|+...
T Consensus       119 ---~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~  191 (388)
T 1xip_A          119 ---FRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQLAVLLKDRSFQSFAWRN  191 (388)
T ss_dssp             ---EEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred             ---cCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCceEEEEcCCcEEEEcCCC
Confidence               223344556677777766569999999999999999877653    4568999999977689999999999998865


Q ss_pred             Ccc--eEEEEe----e---cCCccEEEEEeeeCCCCCcEEEE
Q 016224          343 SGN--LEVTYT----H---NEEHGVLALCGMPDSEGKPVLLC  375 (393)
Q Consensus       343 ~~~--~~~~~~----~---~~~~~v~~~~~~~~~~~~~~l~s  375 (393)
                      ...  ...+..    .   .+...+.++.|.++..   ++++
T Consensus       192 ~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~---flv~  230 (388)
T 1xip_A          192 GEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD---FLAV  230 (388)
T ss_dssp             TEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE---EEEE
T ss_pred             ccccccceecCCcccccccCCCeeEEEEEEecCCe---EEEE
Confidence            553  233311    1   1356799999987644   5554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.16  E-value=1.7e-08  Score=101.19  Aligned_cols=236  Identities=11%  Similarity=0.056  Sum_probs=142.1

Q ss_pred             CCcCCEEEEEecCCCCEEEEE-----eCCCcEEEEECCCCeEEEE-EecC-CceEEEEeCCCEEEEE-cCC---------
Q 016224          148 GHQKVVSGITLPSGSDKLYSG-----SKDETVRVWDCASGQCAGV-INLG-GEVGCMISEGPWIFIG-VTN---------  210 (393)
Q Consensus       148 ~h~~~I~~i~~s~~~~~l~s~-----s~dg~v~iwd~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~~-~~~---------  210 (393)
                      +|...+..++||||+++||-+     +.+.+|++||+.+++.+.. +... .....+. +++.|+.+ .+.         
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            466689999999999988843     3335799999999986553 2211 2234556 88766654 442         


Q ss_pred             ----eEEEEECCCCce---eeecC---CCCcEEEEEEeCC--EE-EEEeC---CCcEEEEEeccCCccccCceeecCcee
Q 016224          211 ----FVKAWNTQTNTD---LSLSG---PVGQVYAMAVGND--LL-FAGTQ---DGAILAWKFNVTTNCFEPAASLKGHSL  274 (393)
Q Consensus       211 ----~i~v~d~~~~~~---~~~~~---~~~~v~~l~~~~~--~l-~~~~~---dg~I~vwd~~~~~~~~~~~~~~~~~~~  274 (393)
                          .|++|++.+...   .....   +...+..+.++++  +| ++...   ...|+++|+..+...   ...+..+..
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~---~~~l~~~~~  281 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP---LLTVQGDLD  281 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC---CEEEECSSS
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc---eEEEeCCCC
Confidence                499999987653   22222   3445788999998  33 44432   358999998775321   223333333


Q ss_pred             eEE-EEEEcCCEEE-EecC---CCcEEEeeCCCcce--eeEeccCccceEEEEEcCCEEEEEeC-CC--cEEEEEcCCCc
Q 016224          275 AVV-SLVVGANKLY-SGSM---DNSIRVWNLETLQC--IQTLTEHTSVVMSLLCWDQFLLSCSL-DK--TIKVWFATDSG  344 (393)
Q Consensus       275 ~v~-~l~~~~~~l~-sg~~---dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~l~s~s~-dg--~i~iwd~~~~~  344 (393)
                      ... .+..+++.|+ ....   .+.|.++|+.++..  ...+..|...+..+...+++|+.... ++  .|++||+.. .
T Consensus       282 ~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g-~  360 (693)
T 3iuj_A          282 ADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEG-K  360 (693)
T ss_dssp             SCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTS-C
T ss_pred             ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCC-C
Confidence            222 2455666544 3333   36899999987654  34555555554466666887766655 44  688898863 3


Q ss_pred             ceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeC---CCeEEEEeCCcee
Q 016224          345 NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN---DNSVRFYDLPSVI  391 (393)
Q Consensus       345 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~---dg~I~iwd~~s~~  391 (393)
                      ....+. ......+..+.+.++.  ..++++.+.   -+.|..||+.+++
T Consensus       361 ~~~~l~-~p~~~~~~~~~~~~d~--~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          361 RVREVA-LPGLGSVSGFNGKHDD--PALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEEEC-CSSSSEEEECCCCTTC--SCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             eeEEee-cCCCceEEeeecCCCC--CEEEEEecCCCCCCEEEEEECCCCe
Confidence            333322 2223345555555443  334444433   2789999998764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.14  E-value=1.5e-08  Score=92.84  Aligned_cols=236  Identities=10%  Similarity=-0.013  Sum_probs=152.1

Q ss_pred             eeEecCc--EEEec----------CCCeEEEEECCCCcEEEEEecCC-------cCCEEEEEecCCCCEEEEEeC--CCc
Q 016224          115 RNWVQGN--CMYGE----------KCKFLHSWTVGDGFKLLTQLEGH-------QKVVSGITLPSGSDKLYSGSK--DET  173 (393)
Q Consensus       115 ~~~~~~~--~~~g~----------~dg~i~vwd~~~~~~~~~~l~~h-------~~~I~~i~~s~~~~~l~s~s~--dg~  173 (393)
                      +.+++++  ++.+.          .++.|.+||..+. +.+.++.-.       ...-..++|+|||++|+.+..  ++.
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~-~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL-LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC-CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC-eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            7788764  33332          3678999999998 777776421       123456899999999998864  689


Q ss_pred             EEEEECCCCeEEEEEecCCceEEEEeCC-CEEEEEcCCeEEEEECCC-Cceee-ecCC----CCcEE-EEEEe-CC-EEE
Q 016224          174 VRVWDCASGQCAGVINLGGEVGCMISEG-PWIFIGVTNFVKAWNTQT-NTDLS-LSGP----VGQVY-AMAVG-ND-LLF  243 (393)
Q Consensus       174 v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~i~v~d~~~-~~~~~-~~~~----~~~v~-~l~~~-~~-~l~  243 (393)
                      |.++|+.+++.+.++..+.......... .+++.+.||.+.+.++.+ ++... ...+    ...+. ...|. ++ .++
T Consensus       162 VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~  241 (386)
T 3sjl_D          162 VGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV  241 (386)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred             EEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEE
Confidence            9999999999999998765432222222 344556788888888876 44321 1111    11221 13443 34 555


Q ss_pred             EEeCCCcEEEEEeccCCccccCceeec------------CceeeEEEEEEcCCEEEEecC----------CCcEEEeeCC
Q 016224          244 AGTQDGAILAWKFNVTTNCFEPAASLK------------GHSLAVVSLVVGANKLYSGSM----------DNSIRVWNLE  301 (393)
Q Consensus       244 ~~~~dg~I~vwd~~~~~~~~~~~~~~~------------~~~~~v~~l~~~~~~l~sg~~----------dg~i~iwd~~  301 (393)
                      ..+.+|.|++.|+......  ....+.            ........+..++++++....          ...|.++|+.
T Consensus       242 ~vs~~g~V~v~d~~~~~~~--v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~  319 (386)
T 3sjl_D          242 WPTYTGKIHQIDLSSGDAK--FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK  319 (386)
T ss_dssp             EEBTTSEEEEEECTTSSCE--ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred             EEeCCCEEEEEECCCCcce--eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECC
Confidence            5777899999998765321  111110            111123444455666666432          2579999999


Q ss_pred             CcceeeEeccCccceEEEEEc--CC-EEEEE-eCCCcEEEEEcCCCcceEEEEeecC
Q 016224          302 TLQCIQTLTEHTSVVMSLLCW--DQ-FLLSC-SLDKTIKVWFATDSGNLEVTYTHNE  354 (393)
Q Consensus       302 ~~~~~~~~~~~~~~v~~l~~~--~~-~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~  354 (393)
                      +++.+.++.... .+.++.++  ++ +|++. ..++.|.++|..+++.+..+....+
T Consensus       320 t~kv~~~i~vg~-~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~  375 (386)
T 3sjl_D          320 TGERLAKFEMGH-EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH  375 (386)
T ss_dssp             TCCEEEEEEEEE-EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS
T ss_pred             CCeEEEEEECCC-CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCC
Confidence            999999987432 56677777  54 56654 5589999999998887766655443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.13  E-value=1.2e-07  Score=84.62  Aligned_cols=206  Identities=7%  Similarity=0.022  Sum_probs=132.8

Q ss_pred             EEeeEecC--cEE-EecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 016224          113 LCRNWVQG--NCM-YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN  189 (393)
Q Consensus       113 ~c~~~~~~--~~~-~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  189 (393)
                      -+..|+++  .++ +....+.|+.||..++ +. ..+. ....+.+++++++++++++ . +..|.+||.++++......
T Consensus        16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~-~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~   90 (297)
T 3g4e_A           16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTK-QV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLAT   90 (297)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTC-CE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEE
T ss_pred             cCCeEECCCCEEEEEECCCCEEEEEECCCC-cE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEe
Confidence            46677763  333 4567889999999877 33 2332 4568999999999995554 4 5689999999887654443


Q ss_pred             cCC-----ceE--EEEeCCCEEEEEc----------CCeEEEEECCC-CceeeecCCCCcEEEEEEeCC---EEEEEeCC
Q 016224          190 LGG-----EVG--CMISEGPWIFIGV----------TNFVKAWNTQT-NTDLSLSGPVGQVYAMAVGND---LLFAGTQD  248 (393)
Q Consensus       190 ~~~-----~~~--~~~~~~~~l~~~~----------~~~i~v~d~~~-~~~~~~~~~~~~v~~l~~~~~---~l~~~~~d  248 (393)
                      ...     .+.  .+.+++++.++..          ...-.+|.+.. ++...+.........++|+++   ++++.+.+
T Consensus        91 ~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~  170 (297)
T 3g4e_A           91 VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLS  170 (297)
T ss_dssp             CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGG
T ss_pred             cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCC
Confidence            321     122  2335788776542          12334554432 333333444456788999987   44566678


Q ss_pred             CcEEEEEec--cCCcc-ccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcC
Q 016224          249 GAILAWKFN--VTTNC-FEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD  323 (393)
Q Consensus       249 g~I~vwd~~--~~~~~-~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~  323 (393)
                      +.|.+|++.  ++... .+....+..+......++++  +++.++...++.|.+||..+++.+..+..+...+++++|.+
T Consensus       171 ~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g  250 (297)
T 3g4e_A          171 YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGG  250 (297)
T ss_dssp             TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEES
T ss_pred             CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeC
Confidence            899999984  22110 01112222233455667775  55666666778899999999999999988877899999973

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.10  E-value=3.3e-08  Score=98.52  Aligned_cols=268  Identities=10%  Similarity=0.065  Sum_probs=164.7

Q ss_pred             eEecCcEEEecCCCeEEEEECCCCcEEEEEecCC-c----CCEEEEEecCCCCEEEEEeC------CCcEEEEECCCCeE
Q 016224          116 NWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGH-Q----KVVSGITLPSGSDKLYSGSK------DETVRVWDCASGQC  184 (393)
Q Consensus       116 ~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h-~----~~I~~i~~s~~~~~l~s~s~------dg~v~iwd~~~~~~  184 (393)
                      .+..+.+++++.|+.|+.+|..++ +.+..+..+ .    ..+.+--.. .+..++.++.      ++.|..+|..+|+.
T Consensus       125 a~~~~~v~v~~~dg~l~alD~~tG-~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~  202 (677)
T 1kb0_A          125 ALWKGKVYVGAWDGRLIALDAATG-KEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGER  202 (677)
T ss_dssp             EEETTEEEEECTTSEEEEEETTTC-CEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             eEECCEEEEEcCCCEEEEEECCCC-CEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcE
Confidence            345677888999999999999999 676666644 1    112110001 2345555543      79999999999999


Q ss_pred             EEEEecCCce-----------------------------------EEEEeCCCEEEEEcCC-------------------
Q 016224          185 AGVINLGGEV-----------------------------------GCMISEGPWIFIGVTN-------------------  210 (393)
Q Consensus       185 ~~~~~~~~~~-----------------------------------~~~~~~~~~l~~~~~~-------------------  210 (393)
                      +..+......                                   ..+.+++.+++++..+                   
T Consensus       203 ~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~  282 (677)
T 1kb0_A          203 KWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYL  282 (677)
T ss_dssp             EEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred             EEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeee
Confidence            9888653211                                   2233466777766322                   


Q ss_pred             -eEEEEECCCCcee-eec--CCC--------Cc-EEEEEEeC---CEEEEEeCCCcEEEEEeccCCccccCcee------
Q 016224          211 -FVKAWNTQTNTDL-SLS--GPV--------GQ-VYAMAVGN---DLLFAGTQDGAILAWKFNVTTNCFEPAAS------  268 (393)
Q Consensus       211 -~i~v~d~~~~~~~-~~~--~~~--------~~-v~~l~~~~---~~l~~~~~dg~I~vwd~~~~~~~~~~~~~------  268 (393)
                       .|..+|..+++.+ .+.  .+.        .+ +..+....   ..+++++.+|.|+++|..+++........      
T Consensus       283 ~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~  362 (677)
T 1kb0_A          283 ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS  362 (677)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred             EEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence             4999999999877 322  221        11 22222233   47889999999999999887532111000      


Q ss_pred             -ecCceeeE------------------------EEEEEc--CCEEEEecC------------------------------
Q 016224          269 -LKGHSLAV------------------------VSLVVG--ANKLYSGSM------------------------------  291 (393)
Q Consensus       269 -~~~~~~~v------------------------~~l~~~--~~~l~sg~~------------------------------  291 (393)
                       +......+                        ..++++  ..++++...                              
T Consensus       363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  442 (677)
T 1kb0_A          363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT  442 (677)
T ss_dssp             EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred             ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence             00000000                        023343  456665432                              


Q ss_pred             -------------CCcEEEeeCCCcceeeEeccCccce-EEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCcc
Q 016224          292 -------------DNSIRVWNLETLQCIQTLTEHTSVV-MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHG  357 (393)
Q Consensus       292 -------------dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  357 (393)
                                   .+.|..||+.+++.+.++....... ..+...+..++.++.|+.+++||.++++.+..+..... ..
T Consensus       443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~-~~  521 (677)
T 1kb0_A          443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG-VV  521 (677)
T ss_dssp             CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC-CC
T ss_pred             ccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC-cc
Confidence                         2789999999999988876432211 22444578889999999999999999998877764432 22


Q ss_pred             EEEEEeeeCCCCCcEEEEEeC----------------CCeEEEEeCC
Q 016224          358 VLALCGMPDSEGKPVLLCSCN----------------DNSVRFYDLP  388 (393)
Q Consensus       358 v~~~~~~~~~~~~~~l~s~s~----------------dg~I~iwd~~  388 (393)
                      ...+.+..+  ++++++..+.                .+.+.+|.+.
T Consensus       522 ~~p~~y~~~--G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~  566 (677)
T 1kb0_A          522 AAPSTYMVD--GRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG  566 (677)
T ss_dssp             SCCEEEEET--TEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred             cCCEEEEeC--CEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence            233445444  3345555333                4677888776

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.08  E-value=6.1e-07  Score=79.94  Aligned_cols=223  Identities=12%  Similarity=0.105  Sum_probs=137.2

Q ss_pred             EecCCcCCEEEEEecCCCC-EEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEE--eCCCEEEEEcCCeEEEEECCCCc
Q 016224          145 QLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI--SEGPWIFIGVTNFVKAWNTQTNT  221 (393)
Q Consensus       145 ~l~~h~~~I~~i~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~v~d~~~~~  221 (393)
                      .+..+..--.+..|++++. ++++...++.|..||..+++. ..+.....+..+.  ++++++++ .++.|.+||..+++
T Consensus         7 ~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~-~~~~l~~~d~~~g~   84 (297)
T 3g4e_A            7 VLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVAT-IGTKFCALNWKEQS   84 (297)
T ss_dssp             EECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEE-ETTEEEEEETTTTE
T ss_pred             EeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEE-ECCeEEEEECCCCc
Confidence            3444555667888998654 556666788999999988765 4455555555544  57775554 47789999998877


Q ss_pred             eeeecC-----CCCcEEEEEEeCC-EEEEEe-C---------CCcEEEEEeccCCccccCceeecCceeeEEEEEEc--C
Q 016224          222 DLSLSG-----PVGQVYAMAVGND-LLFAGT-Q---------DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--A  283 (393)
Q Consensus       222 ~~~~~~-----~~~~v~~l~~~~~-~l~~~~-~---------dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~  283 (393)
                      ...+..     ....+..++++++ .|+.++ .         ...-.+|.+....   . ...+..+......++++  +
T Consensus        85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g---~-~~~~~~~~~~pngi~~spdg  160 (297)
T 3g4e_A           85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH---H-VKKYFDQVDISNGLDWSLDH  160 (297)
T ss_dssp             EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS---C-EEEEEEEESBEEEEEECTTS
T ss_pred             EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC---C-EEEEeeccccccceEEcCCC
Confidence            553322     2345788999988 333333 1         1334566554331   1 11122222334566665  5


Q ss_pred             CEE-EEecCCCcEEEeeC--CCcce-----eeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeec
Q 016224          284 NKL-YSGSMDNSIRVWNL--ETLQC-----IQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHN  353 (393)
Q Consensus       284 ~~l-~sg~~dg~i~iwd~--~~~~~-----~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  353 (393)
                      +.| ++.+.++.|.+||+  .++..     +..+..+......++++  +++.++....+.|.+||..+++.+..+....
T Consensus       161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~  240 (297)
T 3g4e_A          161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV  240 (297)
T ss_dssp             CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred             CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence            554 56667889999987  45543     22333344556778887  6666666677889999998777666655432


Q ss_pred             CCccEEEEEee-eCCCCCcEEEEEe
Q 016224          354 EEHGVLALCGM-PDSEGKPVLLCSC  377 (393)
Q Consensus       354 ~~~~v~~~~~~-~~~~~~~~l~s~s  377 (393)
                        ..+.+++|. |+..  .++++..
T Consensus       241 --~~~t~~~f~g~d~~--~L~vt~~  261 (297)
T 3g4e_A          241 --DKTTSCCFGGKNYS--EMYVTCA  261 (297)
T ss_dssp             --SBEEEEEEESGGGC--EEEEEEB
T ss_pred             --CCceEEEEeCCCCC--EEEEEcC
Confidence              358889987 5533  2444444

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.07  E-value=6.9e-11  Score=109.25  Aligned_cols=183  Identities=10%  Similarity=0.038  Sum_probs=106.7

Q ss_pred             ecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc--e-
Q 016224          118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE--V-  194 (393)
Q Consensus       118 ~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~--~-  194 (393)
                      ..+.+++++.|+.|+.||..++ +.+.+++.  ..+.+..+..++..+++++.||.|..||..+++.+..+.....  + 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG-~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTG-SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTC-CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCC-CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence            3456778999999999999999 77777765  4555555566777888888999999999999987766543311  0 


Q ss_pred             -EEEE-eCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecC
Q 016224          195 -GCMI-SEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKG  271 (393)
Q Consensus       195 -~~~~-~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~  271 (393)
                       ..+. .++.+++.+.++.|+.||..+++.+ .+..+. .+ ..+...+.+++++.++.|+.||.+++...+.    +..
T Consensus        85 ~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-~~-~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~----~~~  158 (369)
T 2hz6_A           85 ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-AD-SLSPSTSLLYLGRTEYTITMYDTKTRELRWN----ATY  158 (369)
T ss_dssp             TCSCC-----CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSSSSCCCE----EEE
T ss_pred             cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-cc-cccccCCEEEEEecCCEEEEEECCCCCEEEe----Eec
Confidence             1111 3344444457889999999999876 333222 11 1111334888899999999999988754322    211


Q ss_pred             ceeeEEEEEEcC-----CEEEEecCCCcEEEeeCCCcceeeEecc
Q 016224          272 HSLAVVSLVVGA-----NKLYSGSMDNSIRVWNLETLQCIQTLTE  311 (393)
Q Consensus       272 ~~~~v~~l~~~~-----~~l~sg~~dg~i~iwd~~~~~~~~~~~~  311 (393)
                      +.  .....+++     +.+++++.||.|+.||.++++.+.++..
T Consensus       159 ~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~  201 (369)
T 2hz6_A          159 FD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY  201 (369)
T ss_dssp             EE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred             cc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence            11  11222333     5688889999999999999998887763

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.07  E-value=6.9e-07  Score=79.04  Aligned_cols=228  Identities=14%  Similarity=0.111  Sum_probs=145.5

Q ss_pred             CCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC---CceEEEE--eCCCEEEEEc-CCeEEEEECCCCc
Q 016224          148 GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG---GEVGCMI--SEGPWIFIGV-TNFVKAWNTQTNT  221 (393)
Q Consensus       148 ~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~---~~~~~~~--~~~~~l~~~~-~~~i~v~d~~~~~  221 (393)
                      .....+.+|++.+++++.++...++.|.+||.. ++... +...   ..+..+.  +++.+.++.. ++.|..+|.. ++
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~   93 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG   93 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence            345688999999999988877778999999988 55443 3322   2333333  4677666664 5789999988 55


Q ss_pred             eeee--cCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcE
Q 016224          222 DLSL--SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSI  295 (393)
Q Consensus       222 ~~~~--~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i  295 (393)
                      ...+  ......+..++++++  ++++...++.|..+|.. +..  . ...+......+..++++  ++++++...++.|
T Consensus        94 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~--~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i  169 (300)
T 2qc5_A           94 FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI--Y-EYDLPNKGSYPAFITLGSDNALWFTENQNNSI  169 (300)
T ss_dssp             EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE--E-EEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred             eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE--E-EccCCCCCCCceeEEECCCCCEEEEecCCCeE
Confidence            4422  223467899999876  55555557889999876 321  1 11122233456777775  5556666667899


Q ss_pred             EEeeCCCcceeeE-eccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcE
Q 016224          296 RVWNLETLQCIQT-LTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPV  372 (393)
Q Consensus       296 ~iwd~~~~~~~~~-~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  372 (393)
                      ..||. +++.... +..+...+..+.++  +.+.++....+.|.+||. ++. ............+..+++.+++.   +
T Consensus       170 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~-~~~~~~~~~~~~~~~i~~d~~g~---l  243 (300)
T 2qc5_A          170 GRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE-ISEYDIPTPNARPHAITAGKNSE---I  243 (300)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC-EEEEECSSTTCCEEEEEECSTTC---E
T ss_pred             EEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc-EEEEECCCCCCCceEEEECCCCC---E
Confidence            99998 5554432 22334567888887  455555556778999998 333 22222222234467777766543   6


Q ss_pred             EEEEeCCCeEEEEeCC
Q 016224          373 LLCSCNDNSVRFYDLP  388 (393)
Q Consensus       373 l~s~s~dg~I~iwd~~  388 (393)
                      .++...++.|..|+..
T Consensus       244 ~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          244 WFTEWGANQIGRITND  259 (300)
T ss_dssp             EEEETTTTEEEEECTT
T ss_pred             EEeccCCCeEEEECCC
Confidence            6666567899999873

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.06  E-value=8.9e-08  Score=95.59  Aligned_cols=258  Identities=14%  Similarity=0.085  Sum_probs=156.6

Q ss_pred             eEecCcEEEecCCCeEEEEECCCCcEEEEEecC--CcCCEEEEEecC---CCCEEEEEe------CCCcEEEEECCCCeE
Q 016224          116 NWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEG--HQKVVSGITLPS---GSDKLYSGS------KDETVRVWDCASGQC  184 (393)
Q Consensus       116 ~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~--h~~~I~~i~~s~---~~~~l~s~s------~dg~v~iwd~~~~~~  184 (393)
                      ....+.+++++.|+.|+.+|..++ +.+-.+..  +......+..+|   ++ .++.+.      .+|.|..||..+|+.
T Consensus       118 ~~~~g~v~v~~~dg~l~AlDa~TG-~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~  195 (689)
T 1yiq_A          118 AVWKGKVYVGVLDGRLEAIDAKTG-QRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKE  195 (689)
T ss_dssp             EEETTEEEEECTTSEEEEEETTTC-CEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             EEECCEEEEEccCCEEEEEECCCC-CEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcE
Confidence            345677888999999999999999 66655543  211111111222   34 444443      378999999999999


Q ss_pred             EEEEecCC----------------------------------ceEEEEeCCCEEEEEcCC--------------------
Q 016224          185 AGVINLGG----------------------------------EVGCMISEGPWIFIGVTN--------------------  210 (393)
Q Consensus       185 ~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~~~--------------------  210 (393)
                      +..+....                                  ....+.++..+++++..+                    
T Consensus       196 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~  275 (689)
T 1yiq_A          196 AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLS  275 (689)
T ss_dssp             EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTT
T ss_pred             EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence            88876310                                  012333456777776332                    


Q ss_pred             eEEEEECCCCcee-eecC--CC-------CcE--EEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCc-------ee
Q 016224          211 FVKAWNTQTNTDL-SLSG--PV-------GQV--YAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPA-------AS  268 (393)
Q Consensus       211 ~i~v~d~~~~~~~-~~~~--~~-------~~v--~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~-------~~  268 (393)
                      .|..+|..+++.+ .+..  |.       ..+  ..+.+...   .++.++.+|.++++|..+++......       ..
T Consensus       276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~  355 (689)
T 1yiq_A          276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKG  355 (689)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccc
Confidence            4999999999987 3322  21       111  22333332   78889999999999998875321000       00


Q ss_pred             -----------------ecCceeeE-----------EEEEEc--CCEEEEecC---------------------------
Q 016224          269 -----------------LKGHSLAV-----------VSLVVG--ANKLYSGSM---------------------------  291 (393)
Q Consensus       269 -----------------~~~~~~~v-----------~~l~~~--~~~l~sg~~---------------------------  291 (393)
                                       .......+           ..++++  ..++++...                           
T Consensus       356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  435 (689)
T 1yiq_A          356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR  435 (689)
T ss_dssp             EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred             cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcc
Confidence                             00000000           013333  345554321                           


Q ss_pred             ------------------CCcEEEeeCCCcceeeEeccCccceE-EEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEee
Q 016224          292 ------------------DNSIRVWNLETLQCIQTLTEHTSVVM-SLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTH  352 (393)
Q Consensus       292 ------------------dg~i~iwd~~~~~~~~~~~~~~~~v~-~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  352 (393)
                                        +|.|+.||+.+++.+.++..+..... .+...+.+++.++.|+.|+.||.++++.+..+...
T Consensus       436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence                              47899999999999888876543222 34445889999999999999999999888776543


Q ss_pred             cCCccEEEEEeeeCCCCCcEEEEEeC
Q 016224          353 NEEHGVLALCGMPDSEGKPVLLCSCN  378 (393)
Q Consensus       353 ~~~~~v~~~~~~~~~~~~~~l~s~s~  378 (393)
                      .. .....+.|..+  +++|+++.+.
T Consensus       516 ~~-~~~~p~ty~~~--G~qyv~~~~G  538 (689)
T 1yiq_A          516 SG-VMAAPVTYSVD--GEQYVTFMAG  538 (689)
T ss_dssp             SC-CCSCCEEEEET--TEEEEEEEEC
T ss_pred             CC-cccCceEEEEC--CEEEEEEEec
Confidence            22 12223555444  4456665543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.06  E-value=2.9e-07  Score=86.04  Aligned_cols=230  Identities=10%  Similarity=0.019  Sum_probs=148.9

Q ss_pred             CCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc-eEEEEeCCCEEEEE-cCC--eEEEEECCCCcee-ee
Q 016224          151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-VGCMISEGPWIFIG-VTN--FVKAWNTQTNTDL-SL  225 (393)
Q Consensus       151 ~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~-~~~--~i~v~d~~~~~~~-~~  225 (393)
                      .....|+|+++++++++...++.|++||..+++.......... ...+.++++.|+++ .++  .|.+++...+... .+
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~  210 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI  210 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCBCEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCceeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe
Confidence            4688999999998777777789999999998877665554322 24445677777766 333  7999998766543 22


Q ss_pred             ----cCCCCcEEEEEEeC-C-EEEEEeCCCcEEEEEeccCCccccCcee--ecCceeeE-E-EEEEcC--C-EEEEecCC
Q 016224          226 ----SGPVGQVYAMAVGN-D-LLFAGTQDGAILAWKFNVTTNCFEPAAS--LKGHSLAV-V-SLVVGA--N-KLYSGSMD  292 (393)
Q Consensus       226 ----~~~~~~v~~l~~~~-~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~--~~~~~~~v-~-~l~~~~--~-~l~sg~~d  292 (393)
                          ......+.++++++ + .|+++..++.|+.||......  .....  ..++...- . .+++++  . ++++-..+
T Consensus       211 g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~--~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~  288 (409)
T 3hrp_A          211 GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV--TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL  288 (409)
T ss_dssp             EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE--EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred             eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE--EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence                22456678899998 4 666677788999999876531  11100  11111111 1 566653  3 55566678


Q ss_pred             CcEEEeeCCCcceeeEeccCc---------------cceEEEEEc--CCEEEEEe-CCCcEEEEEcCCCcceEEEEeec-
Q 016224          293 NSIRVWNLETLQCIQTLTEHT---------------SVVMSLLCW--DQFLLSCS-LDKTIKVWFATDSGNLEVTYTHN-  353 (393)
Q Consensus       293 g~i~iwd~~~~~~~~~~~~~~---------------~~v~~l~~~--~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~-  353 (393)
                      +.|+.||....  +..+.++.               .....++++  ++++++-. .++.|+.|++.++. +..+..+. 
T Consensus       289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~  365 (409)
T 3hrp_A          289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQVD  365 (409)
T ss_dssp             TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-EEEEEECTT
T ss_pred             CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-EEEEeCCCC
Confidence            89999997643  33333322               235778887  56667777 78899999976554 44444331 


Q ss_pred             ------------CCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          354 ------------EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       354 ------------~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                                  .-.....+++.+++   .++++-..++.|+.++++
T Consensus       366 ~~g~~~g~~~~~~~~~P~giavd~~g---~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          366 VASQIDGTPLEATFNYPYDICYDGEG---GYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             CBSCCCBSTTTCCBSSEEEEEECSSS---EEEEEESTTCEEEEEEEC
T ss_pred             CCCcCCCChhceEeCCceEEEEcCCC---CEEEEECCCCeEEEEEeC
Confidence                        01346778877663   377777788899988764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.01  E-value=3.1e-08  Score=100.08  Aligned_cols=230  Identities=17%  Similarity=0.092  Sum_probs=140.0

Q ss_pred             cceEEeeEecCc--EEEecCC-----CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCc---------
Q 016224          110 TDILCRNWVQGN--CMYGEKC-----KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET---------  173 (393)
Q Consensus       110 ~~i~c~~~~~~~--~~~g~~d-----g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~---------  173 (393)
                      ..+....|++++  ++++..+     ..|++||+.++ +.+.. ..+...+..++|+|| +.|+.++.|+.         
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg-~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADG-KPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTC-CEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCC-CCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence            367788999884  3333221     46999999998 44432 112222357899999 99998887664         


Q ss_pred             -----EEEEECCCCeE--EEEEecCC---ce--EEEEeCCCEEEEE-cC-----CeEEEEECCCC--c-eeeecCCCCcE
Q 016224          174 -----VRVWDCASGQC--AGVINLGG---EV--GCMISEGPWIFIG-VT-----NFVKAWNTQTN--T-DLSLSGPVGQV  232 (393)
Q Consensus       174 -----v~iwd~~~~~~--~~~~~~~~---~~--~~~~~~~~~l~~~-~~-----~~i~v~d~~~~--~-~~~~~~~~~~v  232 (393)
                           |++|++.+++.  ...+....   ..  ..+.+++++|+.. .+     ..|.+||+.++  + ...+..+...+
T Consensus       240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~  319 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQ  319 (741)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSC
T ss_pred             CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCce
Confidence                 89999987752  23333322   12  2345688877754 33     38999999877  4 44555544444


Q ss_pred             EEEEE-eCCEEEEEeC----CCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC-EEEEecCCCcEEEeeCC-Ccce
Q 016224          233 YAMAV-GNDLLFAGTQ----DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN-KLYSGSMDNSIRVWNLE-TLQC  305 (393)
Q Consensus       233 ~~l~~-~~~~l~~~~~----dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~l~sg~~dg~i~iwd~~-~~~~  305 (393)
                      ....+ ..+.|+..+.    ++.|.+||+.....  .....+..+...+..+++.++ ++++...|+..+||.+. +++.
T Consensus       320 ~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~--~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~  397 (741)
T 1yr2_A          320 WDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTP--RFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKP  397 (741)
T ss_dssp             EEEEEEETTEEEEEECTTCTTCEEEEEECSSSSC--EEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCE
T ss_pred             EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCcc--ccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCc
Confidence            43323 3346665554    34599999876420  112223334445666777655 57777788887777554 4566


Q ss_pred             eeEecc-CccceEEEEEc--CC-EEEEEe---CCCcEEEEEcCCCc
Q 016224          306 IQTLTE-HTSVVMSLLCW--DQ-FLLSCS---LDKTIKVWFATDSG  344 (393)
Q Consensus       306 ~~~~~~-~~~~v~~l~~~--~~-~l~s~s---~dg~i~iwd~~~~~  344 (393)
                      +..+.. +...+..+.++  ++ ++++.+   ..++|++||+.+++
T Consensus       398 ~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          398 AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            666664 35667777776  44 333333   34789999987654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.99  E-value=1.3e-08  Score=91.97  Aligned_cols=255  Identities=13%  Similarity=0.074  Sum_probs=153.3

Q ss_pred             eEEeeEecC-cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 016224          112 ILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL  190 (393)
Q Consensus       112 i~c~~~~~~-~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~  190 (393)
                      +..+....+ .+++++.+  |..+|. ++ +.+..+...........+.  +..|+.++.++.|..+|.. ++.......
T Consensus        62 ~~~~~~~~~g~l~v~t~~--l~~~d~-~g-~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~  134 (330)
T 3hxj_A           62 ECRPSIGKDGTIYFGSDK--VYAINP-DG-TEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKT  134 (330)
T ss_dssp             EECCEETTTTEECCSSCE--EEEECC-CG-GGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEEC
T ss_pred             ccceEEecCCcEEEecCc--EEEECC-CC-cEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcC
Confidence            345555444 44556555  888886 44 2222222222222233333  5578888889999999998 777766655


Q ss_pred             CCce-EE-EE-eCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccccC
Q 016224          191 GGEV-GC-MI-SEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEP  265 (393)
Q Consensus       191 ~~~~-~~-~~-~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~  265 (393)
                      .... .. .. .++.+++.+.++.|..+|.. ++.. ........+.++...++ .+.+++  +.|..+| .++.    .
T Consensus       135 ~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~----~  206 (330)
T 3hxj_A          135 KKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGT----E  206 (330)
T ss_dssp             SSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSC----E
T ss_pred             CCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCc----E
Confidence            4332 11 22 35666655567899999998 6654 44444455666777554 666666  8899998 4442    2


Q ss_pred             ceeecCceeeEEEEEEcCC-EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc-CCEEEEEeCCCcEEEEEcCCC
Q 016224          266 AASLKGHSLAVVSLVVGAN-KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDS  343 (393)
Q Consensus       266 ~~~~~~~~~~v~~l~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~  343 (393)
                      ..........+.++..+++ .|+.++.++.|..+|. +++.+..+......+..+... +..|..++.++.|..+|. ++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g  284 (330)
T 3hxj_A          207 KWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DG  284 (330)
T ss_dssp             EEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TS
T ss_pred             EEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CC
Confidence            2222333344566666644 7888888888999984 566666665544444455556 667888899999999996 45


Q ss_pred             cceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          344 GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       344 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      +........  ...+.++....   ++ .|..++.+|.+++...+.
T Consensus       285 ~~~~~~~~~--~~~~~~~~~d~---~g-~l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          285 TEKWNFETG--SWIIATPVIDE---NG-TIYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             CEEEEEECS--SCCCSCCEECT---TC-CEEEECTTSCEEEEEC--
T ss_pred             cEEEEEEcC--CccccceEEcC---CC-EEEEEcCCCeEEEEeccc
Confidence            444433322  22233333322   22 377789999999987654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.98  E-value=1.3e-10  Score=107.45  Aligned_cols=184  Identities=15%  Similarity=0.053  Sum_probs=96.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEE-EeC
Q 016224          161 GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMA-VGN  239 (393)
Q Consensus       161 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~-~~~  239 (393)
                      ++..|++++.||.|..||..+|+.+..+.. ..                                      +.+.. ...
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~--------------------------------------~~s~p~~~~   48 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DP--------------------------------------VLQVPTHVE   48 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CC--------------------------------------SCCCC----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CC--------------------------------------ceecceEcC
Confidence            567889999999999999999988766543 11                                      11111 112


Q ss_pred             C-EEEEEeCCCcEEEEEeccCCccccCceeecC--ceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccce
Q 016224          240 D-LLFAGTQDGAILAWKFNVTTNCFEPAASLKG--HSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVV  316 (393)
Q Consensus       240 ~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v  316 (393)
                      + .+++++.|+.|+.||..+++..+........  ...++  + ..++.+++++.|+.|+.||.++|+.+.++..+... 
T Consensus        49 g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~--~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~-  124 (369)
T 2hz6_A           49 EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPC--R-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFAD-  124 (369)
T ss_dssp             -CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSC--C------CCCCEEEEEEEEECCC---------------
T ss_pred             CCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCce--E-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCcc-
Confidence            2 5666688999999998776432211111000  01111  1 13567888889999999999999998888765421 


Q ss_pred             EEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          317 MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       317 ~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                       .....+..+++++.|+.|+.||.++++.+..+.....    ....+..+......+++++.||.|+.||..+|++
T Consensus       125 -~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          125 -SLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             ---------EEEEEEEEEEECCCSSSSSCCCEEEEEEE----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred             -cccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc----cCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence             1222577889999999999999998876555432211    1111111110012577788999999999998875

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.98  E-value=1e-07  Score=94.86  Aligned_cols=264  Identities=14%  Similarity=0.116  Sum_probs=163.0

Q ss_pred             ecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCC----------E-EEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224          118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV----------V-SGITLPSGSDKLYSGSKDETVRVWDCASGQCAG  186 (393)
Q Consensus       118 ~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~----------I-~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  186 (393)
                      ..+.+++++.++.|+.+|..++ +.+-++......          + ..+++  .+..|+.++.|+.|..+|..+|+.+.
T Consensus        65 ~~g~vyv~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  141 (668)
T 1kv9_A           65 HDGVIYTSMSWSRVIAVDAASG-KELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIW  141 (668)
T ss_dssp             ETTEEEEEEGGGEEEEEETTTC-CEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ECCEEEEECCCCeEEEEECCCC-hhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEee
Confidence            4566777888999999999999 666666533211          0 11222  35678889999999999999999998


Q ss_pred             EEecCCc-----e--EEEEeCCCEEEEEc------CCeEEEEECCCCcee-eecCC---CC-------------------
Q 016224          187 VINLGGE-----V--GCMISEGPWIFIGV------TNFVKAWNTQTNTDL-SLSGP---VG-------------------  230 (393)
Q Consensus       187 ~~~~~~~-----~--~~~~~~~~~l~~~~------~~~i~v~d~~~~~~~-~~~~~---~~-------------------  230 (393)
                      .+.....     +  ..+..++.+++...      ++.|..+|..+++.+ .+...   ..                   
T Consensus       142 ~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  221 (668)
T 1kv9_A          142 SQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ  221 (668)
T ss_dssp             EEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred             eeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence            8876321     1  11223444433322      478999999999987 33210   00                   


Q ss_pred             ---------cEEEEEEeCC--EEEEEeCCC-------------------cEEEEEeccCCccccCceeecCce-------
Q 016224          231 ---------QVYAMAVGND--LLFAGTQDG-------------------AILAWKFNVTTNCFEPAASLKGHS-------  273 (393)
Q Consensus       231 ---------~v~~l~~~~~--~l~~~~~dg-------------------~I~vwd~~~~~~~~~~~~~~~~~~-------  273 (393)
                               ....++++++  +++.++.++                   .|..+|..++...+...  ...|.       
T Consensus       222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~--~~~~~~wd~~~~  299 (668)
T 1kv9_A          222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ--VTPGDSWDFTAT  299 (668)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE--SSTTCCSCCCCC
T ss_pred             eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee--cCCCccccccCC
Confidence                     0113567664  777877766                   38899988875433211  11111       


Q ss_pred             e--eEEEEEEcCC---EEEEecCCCcEEEeeCCCcceeeEeccCcc------------ce--------------------
Q 016224          274 L--AVVSLVVGAN---KLYSGSMDNSIRVWNLETLQCIQTLTEHTS------------VV--------------------  316 (393)
Q Consensus       274 ~--~v~~l~~~~~---~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~------------~v--------------------  316 (393)
                      .  ....+..+++   .++.++.+|.++++|.++++.+..+.....            ++                    
T Consensus       300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G  379 (668)
T 1kv9_A          300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFG  379 (668)
T ss_dssp             SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTC
T ss_pred             CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcc
Confidence            1  2234455665   689999999999999999998854432110            00                    


Q ss_pred             ----EEEEEcC--CEEEE------------------------------------EeCCCcEEEEEcCCCcceEEEEeecC
Q 016224          317 ----MSLLCWD--QFLLS------------------------------------CSLDKTIKVWFATDSGNLEVTYTHNE  354 (393)
Q Consensus       317 ----~~l~~~~--~~l~s------------------------------------~s~dg~i~iwd~~~~~~~~~~~~~~~  354 (393)
                          ..+++++  ..++.                                    ...+|.|..||+.+++.+........
T Consensus       380 ~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~  459 (668)
T 1kv9_A          380 AHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH  459 (668)
T ss_dssp             SSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS
T ss_pred             ccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCC
Confidence                0123331  22222                                    11348899999998877655543221


Q ss_pred             CccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          355 EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       355 ~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                         .........+.   +++.++.||.|+.||..++++
T Consensus       460 ---~~~~~~~t~gg---~vf~g~~dg~l~a~d~~tG~~  491 (668)
T 1kv9_A          460 ---WNGGTLSTAGN---LVFQGTAAGQMHAYSADKGEA  491 (668)
T ss_dssp             ---CCCCEEEETTT---EEEEECTTSEEEEEETTTCCE
T ss_pred             ---CcCceeEeCCC---EEEEECCcccchhhhhhcChh
Confidence               11111112222   788899999999999999875

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.97  E-value=6.5e-07  Score=77.76  Aligned_cols=206  Identities=11%  Similarity=0.028  Sum_probs=138.2

Q ss_pred             EEEEEecCCcC--CEEEEEecCCCCEEEEEeC--CCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEE
Q 016224          141 KLLTQLEGHQK--VVSGITLPSGSDKLYSGSK--DETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWN  216 (393)
Q Consensus       141 ~~~~~l~~h~~--~I~~i~~s~~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d  216 (393)
                      +.+.++. |..  ....|+|++++.+.++.+.  ++.|.+.|+.+++.+..+..+.                        
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~------------------------   64 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD------------------------   64 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT------------------------
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC------------------------
Confidence            5666664 543  4689999998644444443  5799999999999887765322                        


Q ss_pred             CCCCceeeecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcE
Q 016224          217 TQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSI  295 (393)
Q Consensus       217 ~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i  295 (393)
                                  ......+++.++ ++++.-.++.+.++|..+.    +.+..+......-..++++++.++++..++.|
T Consensus        65 ------------~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~----~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l  128 (266)
T 2iwa_A           65 ------------SYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTL----SNIKNFTHQMKDGWGLATDGKILYGSDGTSIL  128 (266)
T ss_dssp             ------------TCCEEEEEEETTEEEEEETTCSEEEEEETTTT----EEEEEEECCSSSCCEEEECSSSEEEECSSSEE
T ss_pred             ------------CcceEEEEEeCCEEEEEEecCCEEEEEECCCC----cEEEEEECCCCCeEEEEECCCEEEEECCCCeE
Confidence                        112234556666 4444456788999998765    33333321111224578888877777778999


Q ss_pred             EEeeCCCcceeeEeccCc--c---ceEEEEEcCCEEEEEe-CCCcEEEEEcCCCcceEEEEeec-----------CCccE
Q 016224          296 RVWNLETLQCIQTLTEHT--S---VVMSLLCWDQFLLSCS-LDKTIKVWFATDSGNLEVTYTHN-----------EEHGV  358 (393)
Q Consensus       296 ~iwd~~~~~~~~~~~~~~--~---~v~~l~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v  358 (393)
                      .++|..+.+.+.++....  .   ....+.+.+..+.+.. .++.|.+.|..+++.+..+....           .....
T Consensus       129 ~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~  208 (266)
T 2iwa_A          129 YEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVL  208 (266)
T ss_dssp             EEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCE
T ss_pred             EEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCce
Confidence            999999999888876322  1   2456666655555444 57899999999988777776421           11245


Q ss_pred             EEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          359 LALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       359 ~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      ..+++.|+.  +++++++...+.|.+.++..
T Consensus       209 nGIa~~~~~--~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          209 NGIAWDQEN--KRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EEEEEETTT--TEEEEEETTCSEEEEEEEEE
T ss_pred             EEEEEcCCC--CEEEEECCCCCeEEEEEEec
Confidence            788888774  45788888889999888754

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.95  E-value=1.9e-07  Score=87.12  Aligned_cols=233  Identities=10%  Similarity=0.015  Sum_probs=149.6

Q ss_pred             EeeEecCc--EEEec----------CCCeEEEEECCCCcEEEEEecCC-------cCCEEEEEecCCCCEEEEEeC--CC
Q 016224          114 CRNWVQGN--CMYGE----------KCKFLHSWTVGDGFKLLTQLEGH-------QKVVSGITLPSGSDKLYSGSK--DE  172 (393)
Q Consensus       114 c~~~~~~~--~~~g~----------~dg~i~vwd~~~~~~~~~~l~~h-------~~~I~~i~~s~~~~~l~s~s~--dg  172 (393)
                      -+.+++++  ++++.          .++.|.++|..+. +.+.++.--       ...-..++|+||+++|+.+..  ++
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~-~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~  200 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF-LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAP  200 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC-CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSC
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC-cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCC
Confidence            57777763  33333          4678999999998 777766421       123456889999999999875  57


Q ss_pred             cEEEEECCCCeEEEEEecCCceEEEEeC--CCEEEEEcCCeEEEEECCCCceeee-----cCCCCcE-EEEEEeCC--EE
Q 016224          173 TVRVWDCASGQCAGVINLGGEVGCMISE--GPWIFIGVTNFVKAWNTQTNTDLSL-----SGPVGQV-YAMAVGND--LL  242 (393)
Q Consensus       173 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~i~v~d~~~~~~~~~-----~~~~~~v-~~l~~~~~--~l  242 (393)
                      .|.+.|+.+++.+..+...... .+.++  ..++....++.+.+.+..+++....     .....++ ..+.+.++  .+
T Consensus       201 ~VsVID~~t~kvv~~I~v~g~~-~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~  279 (426)
T 3c75_H          201 AVGVVDLEGKTFDRMLDVPDCY-HIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRL  279 (426)
T ss_dssp             EEEEEETTTTEEEEEEECCSEE-EEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEE
T ss_pred             eEEEEECCCCeEEEEEEcCCce-eeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEE
Confidence            8999999999999999876542 23332  2334455778887778755554311     1111111 12345555  55


Q ss_pred             EEEeCCCcEEEEEeccCCccccCceee----------cCceeeEEEEEEcCCEEEEecC----------CCcEEEeeCCC
Q 016224          243 FAGTQDGAILAWKFNVTTNCFEPAASL----------KGHSLAVVSLVVGANKLYSGSM----------DNSIRVWNLET  302 (393)
Q Consensus       243 ~~~~~dg~I~vwd~~~~~~~~~~~~~~----------~~~~~~v~~l~~~~~~l~sg~~----------dg~i~iwd~~~  302 (393)
                      +..+..+.|.+.|+............+          .........+..+++++++...          ++.|.++|+.+
T Consensus       280 ~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T  359 (426)
T 3c75_H          280 VWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET  359 (426)
T ss_dssp             EEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred             EEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC
Confidence            555678899999986543110000000          0011112355666676655432          35799999999


Q ss_pred             cceeeEeccCccceEEEEEc--CC-EEEEEe-CCCcEEEEEcCCCcceEEE
Q 016224          303 LQCIQTLTEHTSVVMSLLCW--DQ-FLLSCS-LDKTIKVWFATDSGNLEVT  349 (393)
Q Consensus       303 ~~~~~~~~~~~~~v~~l~~~--~~-~l~s~s-~dg~i~iwd~~~~~~~~~~  349 (393)
                      .+.+.++.... ....+.++  ++ ++++.. .++.|.++|+.+.+.+..+
T Consensus       360 ~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          360 GERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             CCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            99999986433 35667776  66 787777 5999999999988877665

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.94  E-value=1.7e-06  Score=78.13  Aligned_cols=202  Identities=11%  Similarity=0.022  Sum_probs=127.8

Q ss_pred             EEeeEecC--cEE-EecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 016224          113 LCRNWVQG--NCM-YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN  189 (393)
Q Consensus       113 ~c~~~~~~--~~~-~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  189 (393)
                      ....|+++  .++ +...++.|.+||..++ +.. .+. ....+.+++|+++++++++. .+ .|.+||..+++......
T Consensus        52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~-~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILERELHELHLASG-RKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTT-EEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEECCCC-cEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence            45567764  333 5667889999999887 332 233 34689999999999877754 44 49999998887654433


Q ss_pred             cCC-----ceEE--EEeCCCEEEEEcC-------CeEEEEECCCCceeeecCCCCcEEEEEEeCC--EE-EEEeCCCcEE
Q 016224          190 LGG-----EVGC--MISEGPWIFIGVT-------NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LL-FAGTQDGAIL  252 (393)
Q Consensus       190 ~~~-----~~~~--~~~~~~~l~~~~~-------~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~~~~dg~I~  252 (393)
                      ...     .+..  +.++++++++...       +.|..++  +++...+.........++|+++  .| ++.+.++.|.
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~  204 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLM  204 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEE
Confidence            211     1222  2357777665432       3566666  4544433333445778999987  44 4555678999


Q ss_pred             EEEec--cC-Cccc-cCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc
Q 016224          253 AWKFN--VT-TNCF-EPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW  322 (393)
Q Consensus       253 vwd~~--~~-~~~~-~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~  322 (393)
                      +||+.  ++ .... +....+.........+.++  +++.++...++.|.+||. +++.+..+..+...+.+++|.
T Consensus       205 ~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~  279 (326)
T 2ghs_A          205 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI  279 (326)
T ss_dssp             EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred             EEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEe
Confidence            99986  33 2110 1111222223345567775  555555556788999998 677778887777778999987

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.94  E-value=8.1e-07  Score=83.01  Aligned_cols=220  Identities=14%  Similarity=0.089  Sum_probs=137.6

Q ss_pred             ceEEeeEecCcE-EE-ecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCC--cEEEEECCCCeEEE
Q 016224          111 DILCRNWVQGNC-MY-GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE--TVRVWDCASGQCAG  186 (393)
Q Consensus       111 ~i~c~~~~~~~~-~~-g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg--~v~iwd~~~~~~~~  186 (393)
                      ....++|.+++. +. ...++.|++||..++ ++........ ... ++|+++++.|+++..++  .|.+|+..++....
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g-~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDN-KVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTT-EEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCC-EEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            456777876643 33 445689999999887 5554444432 233 99999999999998876  78999887665444


Q ss_pred             EE----e-cCCc--eEEEEe-CCCEEEEEcCCeEEEEECCCCceeee-----cCCCCcE-E-EEEEeCC---EEEEEeCC
Q 016224          187 VI----N-LGGE--VGCMIS-EGPWIFIGVTNFVKAWNTQTNTDLSL-----SGPVGQV-Y-AMAVGND---LLFAGTQD  248 (393)
Q Consensus       187 ~~----~-~~~~--~~~~~~-~~~~l~~~~~~~i~v~d~~~~~~~~~-----~~~~~~v-~-~l~~~~~---~l~~~~~d  248 (393)
                      .+    . ....  ...+.+ ++.++++..++.|..||..++....+     .+....- . .++++++   ++++-..+
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~  288 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL  288 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence            44    1 1111  223334 44445544667899999988765433     2222222 3 8999984   55666678


Q ss_pred             CcEEEEEeccCCccccCceeecCc---------------eeeEEEEEEc--CCEEEEec-CCCcEEEeeCCCcceeeEec
Q 016224          249 GAILAWKFNVTTNCFEPAASLKGH---------------SLAVVSLVVG--ANKLYSGS-MDNSIRVWNLETLQCIQTLT  310 (393)
Q Consensus       249 g~I~vwd~~~~~~~~~~~~~~~~~---------------~~~v~~l~~~--~~~l~sg~-~dg~i~iwd~~~~~~~~~~~  310 (393)
                      +.|+.|+.....      ..+.++               -.....++++  ++++++-. .++.|+.||+.+++. .++.
T Consensus       289 ~~I~~~~~~g~~------~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~  361 (409)
T 3hrp_A          289 SSVYKITPDGEC------EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVA  361 (409)
T ss_dssp             TEEEEECTTCCE------EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEE
T ss_pred             CEEEEEecCCCE------EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEe
Confidence            889999865431      111111               1234566765  56677777 789999999877764 4443


Q ss_pred             cC---------------ccceEEEEEc--CCEEEEEeCCCcEEEEEc
Q 016224          311 EH---------------TSVVMSLLCW--DQFLLSCSLDKTIKVWFA  340 (393)
Q Consensus       311 ~~---------------~~~v~~l~~~--~~~l~s~s~dg~i~iwd~  340 (393)
                      ++               -.....++++  +.++++-..++.|+.+++
T Consensus       362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            33               1345777777  345555566677777664

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.92  E-value=5.6e-07  Score=87.77  Aligned_cols=266  Identities=11%  Similarity=0.042  Sum_probs=159.4

Q ss_pred             ecCcEEEecC-CCeEEEEEC-CCCcEEEEEecCCcC-C---------E-EEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 016224          118 VQGNCMYGEK-CKFLHSWTV-GDGFKLLTQLEGHQK-V---------V-SGITLPSGSDKLYSGSKDETVRVWDCASGQC  184 (393)
Q Consensus       118 ~~~~~~~g~~-dg~i~vwd~-~~~~~~~~~l~~h~~-~---------I-~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~  184 (393)
                      ..+.+++++. ++.|+-+|. .++ +.+-++..... .         + ..+++  .+..|+.++.|+.|..+|..+|+.
T Consensus        61 ~~g~vyv~~~~~~~v~AlD~~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~  137 (571)
T 2ad6_A           61 IGDMMYVHSAFPNNTYALNLNDPG-KIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKI  137 (571)
T ss_dssp             ETTEEEEECSTTTCEEEEETTCTT-SEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred             ECCEEEEEeCCCCEEEEEeCCCCc-cEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence            3566677777 899999999 898 56555543211 0         0 11222  356888889999999999999999


Q ss_pred             EEEEecCC-----ce--EEEEeCCCEEEEEc------CCeEEEEECCCCcee-eecCCCCc-------------------
Q 016224          185 AGVINLGG-----EV--GCMISEGPWIFIGV------TNFVKAWNTQTNTDL-SLSGPVGQ-------------------  231 (393)
Q Consensus       185 ~~~~~~~~-----~~--~~~~~~~~~l~~~~------~~~i~v~d~~~~~~~-~~~~~~~~-------------------  231 (393)
                      +..+....     .+  ..+..++.+++...      ++.|..+|..+++.+ ........                   
T Consensus       138 ~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~  217 (571)
T 2ad6_A          138 NWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             EEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             EEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence            98877543     11  11223444444333      689999999999876 32221100                   


Q ss_pred             ------------------E-EEEEEeCC--EEEEEeCC----------------CcEEEEEeccCCccccCcee------
Q 016224          232 ------------------V-YAMAVGND--LLFAGTQD----------------GAILAWKFNVTTNCFEPAAS------  268 (393)
Q Consensus       232 ------------------v-~~l~~~~~--~l~~~~~d----------------g~I~vwd~~~~~~~~~~~~~------  268 (393)
                                        + ..++++++  .++.++.+                +.|..+|..++...+.....      
T Consensus       218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d  297 (571)
T 2ad6_A          218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD  297 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence                              0 12455554  66665532                35889998887543221110      


Q ss_pred             ecCceeeE-EEEEEcCC---EEEEecCCCcEEEeeCCCcceeeEeccCc-------------cce---------------
Q 016224          269 LKGHSLAV-VSLVVGAN---KLYSGSMDNSIRVWNLETLQCIQTLTEHT-------------SVV---------------  316 (393)
Q Consensus       269 ~~~~~~~v-~~l~~~~~---~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-------------~~v---------------  316 (393)
                      ......++ .....+++   .++.++.+|.+.++|.++++.+..+....             .++               
T Consensus       298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~  377 (571)
T 2ad6_A          298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTN  377 (571)
T ss_dssp             CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEE
T ss_pred             cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceE
Confidence            00112222 22334563   57788899999999999999887664321             111               


Q ss_pred             -----------EEEEEc--CCEEEEEe-------------------------------------CCCcEEEEEcCCCcce
Q 016224          317 -----------MSLLCW--DQFLLSCS-------------------------------------LDKTIKVWFATDSGNL  346 (393)
Q Consensus       317 -----------~~l~~~--~~~l~s~s-------------------------------------~dg~i~iwd~~~~~~~  346 (393)
                                 ..++++  ..+|++..                                     .++.|..||+.+++.+
T Consensus       378 ~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~  457 (571)
T 2ad6_A          378 ICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK  457 (571)
T ss_dssp             ESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE
T ss_pred             ECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEE
Confidence                       112333  23444332                                     3578999999888776


Q ss_pred             EEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          347 EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       347 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      ........   +........  ++ +++.++.||.|+.||..+|++
T Consensus       458 W~~~~~~~---~~~~~~~t~--gg-~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          458 WTKWEKFA---AWGGTLYTK--GG-LVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             EEEEESSC---CCSBCEEET--TT-EEEEECTTSEEEEEETTTCCE
T ss_pred             EEecCCCC---ccceeEEEC--CC-EEEEEcCCCeEEEEECCCCCE
Confidence            55543221   111111111  22 677799999999999999976

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.91  E-value=6.7e-06  Score=74.20  Aligned_cols=214  Identities=14%  Similarity=0.061  Sum_probs=126.9

Q ss_pred             CEEEEEecCCCC-EEEEEeCCCcEEEEECCCCeEEEEEecCCceEEE--EeCCCEEEEEcCCeEEEEECCCCceeeecCC
Q 016224          152 VVSGITLPSGSD-KLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDLSLSGP  228 (393)
Q Consensus       152 ~I~~i~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~  228 (393)
                      ...+..|+|++. ++++...++.|.+||..+++.. .+.....+..+  .++++++++. ...|.+||..+++...+...
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~~~~~~~  127 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAEL  127 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECS
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCCeEEEEE-CCCEEEEECCCCcEEEEeeC
Confidence            345678999754 5556667889999999887653 34444445443  3577776665 45699999988876533221


Q ss_pred             -----CCcEEEEEEeCC-EEEEEeC-------CCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEE-EEecCC
Q 016224          229 -----VGQVYAMAVGND-LLFAGTQ-------DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKL-YSGSMD  292 (393)
Q Consensus       229 -----~~~v~~l~~~~~-~l~~~~~-------dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l-~sg~~d  292 (393)
                           ...+..+.++++ .+++++.       .+.|..++  .+    +. ..+..+......++++  ++.+ ++.+.+
T Consensus       128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g----~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~  200 (326)
T 2ghs_A          128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG----KV-TKLFADISIPNSICFSPDGTTGYFVDTKV  200 (326)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT----EE-EEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred             CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC----cE-EEeeCCCcccCCeEEcCCCCEEEEEECCC
Confidence                 236889999988 3333332       23455554  22    11 1111122234566665  5555 445567


Q ss_pred             CcEEEeeCC--Cc-ce-----eeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEE
Q 016224          293 NSIRVWNLE--TL-QC-----IQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALC  362 (393)
Q Consensus       293 g~i~iwd~~--~~-~~-----~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  362 (393)
                      +.|.+||+.  ++ +.     +..+.........+.++  +.+.++...++.|.+||. +++.+..+....  ..+.+++
T Consensus       201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~--~~~~~~a  277 (326)
T 2ghs_A          201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG--KQTTCPA  277 (326)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC--SBEEEEE
T ss_pred             CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCC--CCcEEEE
Confidence            899999986  55 32     22333334455677776  556666656789999998 455444443322  3478888


Q ss_pred             ee-eCCCCCcEEEEEeCC
Q 016224          363 GM-PDSEGKPVLLCSCND  379 (393)
Q Consensus       363 ~~-~~~~~~~~l~s~s~d  379 (393)
                      |. ++..  .++++...+
T Consensus       278 f~g~d~~--~L~vt~~~~  293 (326)
T 2ghs_A          278 FIGPDAS--RLLVTSARE  293 (326)
T ss_dssp             EESTTSC--EEEEEEBCT
T ss_pred             EecCCCC--EEEEEecCC
Confidence            87 5432  233444444

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.91  E-value=5.3e-07  Score=80.63  Aligned_cols=212  Identities=12%  Similarity=0.070  Sum_probs=132.5

Q ss_pred             ceEEeeEecCc---EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 016224          111 DILCRNWVQGN---CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV  187 (393)
Q Consensus       111 ~i~c~~~~~~~---~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~  187 (393)
                      ......|.+++   ++++..++.|..|+.. + + ...+..+...+..++++++++++++...++.|.+|+.+ ++....
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g-~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~  121 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRED-G-T-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLL  121 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEEETT-S-C-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEEeCC-C-C-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEE
Confidence            34566777653   3467788999999984 4 2 23444566789999999999966665566889999986 554332


Q ss_pred             EecCC-------ceEEEEeCCCEEEE----Ec--------------CCeEEEEECCCCceeeecCCCCcEEEEEEeCC--
Q 016224          188 INLGG-------EVGCMISEGPWIFI----GV--------------TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--  240 (393)
Q Consensus       188 ~~~~~-------~~~~~~~~~~~l~~----~~--------------~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--  240 (393)
                      .....       ....+.+++.+.++    +.              .+.|..++..+++...+. .......++|+++  
T Consensus       122 ~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~  200 (305)
T 3dr2_A          122 VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQ  200 (305)
T ss_dssp             ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSS
T ss_pred             EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCC
Confidence            22111       11334467887775    21              246788887777655444 5566788999998  


Q ss_pred             EEEEEeCC------CcEEEEEeccCCccccCceee-cCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEecc
Q 016224          241 LLFAGTQD------GAILAWKFNVTTNCFEPAASL-KGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTE  311 (393)
Q Consensus       241 ~l~~~~~d------g~I~vwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  311 (393)
                      .|+++...      +.|.+|++.....  .....+ .........+.++  ++ |+++..++ |.+||. +++.+..+..
T Consensus       201 ~lyv~~~~~~~~~~~~i~~~~~~~~~l--~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~g-v~~~~~-~g~~~~~~~~  275 (305)
T 3dr2_A          201 TLYVSQTPEQGHGSVEITAFAWRDGAL--HDRRHFASVPDGLPDGFCVDRGGW-LWSSSGTG-VCVFDS-DGQLLGHIPT  275 (305)
T ss_dssp             EEEEEECCC---CCCEEEEEEEETTEE--EEEEEEECCSSSCCCSEEECTTSC-EEECCSSE-EEEECT-TSCEEEEEEC
T ss_pred             EEEEEecCCcCCCCCEEEEEEecCCCc--cCCeEEEECCCCCCCeEEECCCCC-EEEecCCc-EEEECC-CCCEEEEEEC
Confidence            56666554      7899999875420  000111 0011122334554  55 55555554 999998 5777777765


Q ss_pred             CccceEEEEEc--CCEEEEEeCCC
Q 016224          312 HTSVVMSLLCW--DQFLLSCSLDK  333 (393)
Q Consensus       312 ~~~~v~~l~~~--~~~l~s~s~dg  333 (393)
                      +. .+.+++|.  ++.|+.++.++
T Consensus       276 ~~-~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          276 PG-TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             SS-CCCEEEECTTSCEEEEEETTE
T ss_pred             CC-ceeEEEEeCCCCEEEEEcCCe
Confidence            55 47788885  55677666654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.90  E-value=2.7e-07  Score=92.43  Aligned_cols=228  Identities=14%  Similarity=0.146  Sum_probs=136.9

Q ss_pred             cceEEeeEecCcE-EE------ecCCCeEEEEECCCCcEEEE-EecCCcCCEEEEEecCCCCEEEEEeCCCc--------
Q 016224          110 TDILCRNWVQGNC-MY------GEKCKFLHSWTVGDGFKLLT-QLEGHQKVVSGITLPSGSDKLYSGSKDET--------  173 (393)
Q Consensus       110 ~~i~c~~~~~~~~-~~------g~~dg~i~vwd~~~~~~~~~-~l~~h~~~I~~i~~s~~~~~l~s~s~dg~--------  173 (393)
                      ..+....|++++. ++      |+....|++||+.++ +.+. .+...  ....++|+ |++.|+.++.+..        
T Consensus       129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg-~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESK-QPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTC-SEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCC-CCCccccCCc--eeccEEEe-CCCEEEEEEecCccccccccc
Confidence            3567778998853 22      334468999999998 4333 22211  12467899 9999999988754        


Q ss_pred             -----EEEEECCCCeE--EEEEecCC----ce--EEEEeCCCEEEEE-c----CCeEEEEECCCC--ceeeecCCCCcEE
Q 016224          174 -----VRVWDCASGQC--AGVINLGG----EV--GCMISEGPWIFIG-V----TNFVKAWNTQTN--TDLSLSGPVGQVY  233 (393)
Q Consensus       174 -----v~iwd~~~~~~--~~~~~~~~----~~--~~~~~~~~~l~~~-~----~~~i~v~d~~~~--~~~~~~~~~~~v~  233 (393)
                           |++|++.+++.  ...+....    ..  ..+.+++++|+.. .    .+.|.++|+.++  ....+..+.....
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~  284 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV  284 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence                 99999987653  33333332    12  2345688887653 2    248999999776  4445555555544


Q ss_pred             EE-EEeCC-EEEEEeCC---CcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecC-CC--cEEEeeCCCcce
Q 016224          234 AM-AVGND-LLFAGTQD---GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSM-DN--SIRVWNLETLQC  305 (393)
Q Consensus       234 ~l-~~~~~-~l~~~~~d---g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~-dg--~i~iwd~~~~~~  305 (393)
                      .. ....+ +++....+   +.|..+|+.....  .....+..|...+..+++++++|+.... ++  .|++||+..+. 
T Consensus       285 ~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-  361 (693)
T 3iuj_A          285 SLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGP--AHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKR-  361 (693)
T ss_dssp             EEEEEETTEEEEEECTTCTTCEEEEEETTSCCG--GGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSCE-
T ss_pred             EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc--cccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCCe-
Confidence            43 33344 44444443   6788999877532  1122333343333377788887766654 43  78999988543 


Q ss_pred             eeEecc-CccceEEEEEc--CCEEEEEeCC----CcEEEEEcCCCc
Q 016224          306 IQTLTE-HTSVVMSLLCW--DQFLLSCSLD----KTIKVWFATDSG  344 (393)
Q Consensus       306 ~~~~~~-~~~~v~~l~~~--~~~l~s~s~d----g~i~iwd~~~~~  344 (393)
                      ...+.. ....+..+.++  ++.|+....+    ++|..||+.+++
T Consensus       362 ~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          362 VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            444432 33455555554  3433333333    789999986554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.90  E-value=9e-08  Score=86.30  Aligned_cols=212  Identities=15%  Similarity=0.147  Sum_probs=145.0

Q ss_pred             ecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce-EE
Q 016224          118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV-GC  196 (393)
Q Consensus       118 ~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~-~~  196 (393)
                      ..+.+++++.++.|..+|.. + +.+.....+...+.++...+++. |+.++.++.|..+|.. ++....+...... ..
T Consensus       106 ~~~~l~v~t~~~~l~~~d~~-g-~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~  181 (330)
T 3hxj_A          106 FEDILYVTSMDGHLYAINTD-G-TEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSA  181 (330)
T ss_dssp             ETTEEEEECTTSEEEEECTT-S-CEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSC
T ss_pred             ECCEEEEEecCCEEEEEcCC-C-CEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceee
Confidence            36778889999999999988 6 55555555666666777776766 6667888999999998 8777776654322 22


Q ss_pred             -EE-eCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccccCceeecCc
Q 016224          197 -MI-SEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGH  272 (393)
Q Consensus       197 -~~-~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~  272 (393)
                       .. .++.+ .++. +.|..+| .+++.. ........+.++...++ .|.+++.++.|..+|....     ........
T Consensus       182 ~~~d~~g~l-~v~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~-----~~~~~~~~  253 (330)
T 3hxj_A          182 ASIGKDGTI-YFGS-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGT-----EKWRFKTG  253 (330)
T ss_dssp             CEECTTCCE-EEES-SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTSC-----EEEEEECS
T ss_pred             eEEcCCCEE-EEEe-CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCCCC-----EeEEeeCC
Confidence             22 34554 4444 8999999 565554 55545566778888877 8888888888988864321     12222222


Q ss_pred             eeeEEEEEEc-CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc-CCEEEEEeCCCcEEEEEcCC
Q 016224          273 SLAVVSLVVG-ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATD  342 (393)
Q Consensus       273 ~~~v~~l~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~  342 (393)
                      ...+..+..+ ++.|+.++.++.|..+|. +++.+..+......+.++..+ +..|..++.+|.+++.....
T Consensus       254 ~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          254 KRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             SCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC--
T ss_pred             CCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEeccc
Confidence            2222234444 567888888989999996 677777776555666777774 56788899999999887643

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.87  E-value=1.5e-06  Score=84.81  Aligned_cols=190  Identities=12%  Similarity=0.117  Sum_probs=119.2

Q ss_pred             ecCcEEEecC-CCeEEEEEC-CCCcEEEEEecCCcCC-----------EEEEEecCCCCE----EEEEeCCCcEEEEECC
Q 016224          118 VQGNCMYGEK-CKFLHSWTV-GDGFKLLTQLEGHQKV-----------VSGITLPSGSDK----LYSGSKDETVRVWDCA  180 (393)
Q Consensus       118 ~~~~~~~g~~-dg~i~vwd~-~~~~~~~~~l~~h~~~-----------I~~i~~s~~~~~----l~s~s~dg~v~iwd~~  180 (393)
                      ..+.+++++. ++.|+-+|. .++ +.+-++......           ...++++|.+..    |+.++.|+.|..+|..
T Consensus        61 ~~g~vyv~~~~~~~v~AlD~~~tG-~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~  139 (599)
T 1w6s_A           61 VDGKMYIHTSFPNNTFALGLDDPG-TILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE  139 (599)
T ss_dssp             ETTEEEEECSTTTCEEEEETTCTT-SEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred             ECCEEEEEeCCCCEEEEEeCCCCC-cEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence            3556677777 899999999 899 666555432210           123455444444    8889999999999999


Q ss_pred             CCeEEEEEecCC-----ce--EEEEeCCCEEEEEc------CCeEEEEECCCCcee-eecCCCCc---------------
Q 016224          181 SGQCAGVINLGG-----EV--GCMISEGPWIFIGV------TNFVKAWNTQTNTDL-SLSGPVGQ---------------  231 (393)
Q Consensus       181 ~~~~~~~~~~~~-----~~--~~~~~~~~~l~~~~------~~~i~v~d~~~~~~~-~~~~~~~~---------------  231 (393)
                      +|+.+.......     .+  ..+..++.+++.+.      ++.|+.+|.++++.+ ........               
T Consensus       140 TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          140 TGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             TCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence            999998876543     11  11223454444332      689999999999876 33221110               


Q ss_pred             ----------------------E-EEEEEeCC--EEEEEeCC----------------CcEEEEEeccCCccccCceeec
Q 016224          232 ----------------------V-YAMAVGND--LLFAGTQD----------------GAILAWKFNVTTNCFEPAASLK  270 (393)
Q Consensus       232 ----------------------v-~~l~~~~~--~l~~~~~d----------------g~I~vwd~~~~~~~~~~~~~~~  270 (393)
                                            + ..++++++  +++.++.+                +.|..+|..++...+..  ...
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~--q~~  297 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGY--QKT  297 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEE--ESS
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEe--ecC
Confidence                                  0 12344444  67776655                37889998887543221  111


Q ss_pred             Cc--------eeeEE-EEE-EcC---CEEEEecCCCcEEEeeCCCcceeeEec
Q 016224          271 GH--------SLAVV-SLV-VGA---NKLYSGSMDNSIRVWNLETLQCIQTLT  310 (393)
Q Consensus       271 ~~--------~~~v~-~l~-~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~  310 (393)
                      .|        ..++. .+. .++   ..++.++.+|.+.++|.++++.+....
T Consensus       298 ~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          298 PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence            12        12222 222 345   357778999999999999999887654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.83  E-value=1.1e-06  Score=75.51  Aligned_cols=184  Identities=13%  Similarity=0.101  Sum_probs=123.1

Q ss_pred             EEEEEecCCc--CCEEEEEecCCCCEEEEEeCCC--cEEEEECCCCeEEEEEecCCce--EEEEeCCCEEEEE--cCCeE
Q 016224          141 KLLTQLEGHQ--KVVSGITLPSGSDKLYSGSKDE--TVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIG--VTNFV  212 (393)
Q Consensus       141 ~~~~~l~~h~--~~I~~i~~s~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~--~~~~i  212 (393)
                      +.+.++. |.  .-...|.|+ ++.+..+.+.+|  .|+++|+++++.+..+......  ..+...+..|...  .++.+
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v  109 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG  109 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE
Confidence            5666774 54  335889998 666667777766  9999999999999999877653  3344455555554  47899


Q ss_pred             EEEECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecC----ce-eeEEEEEEcCCEEE
Q 016224          213 KAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKG----HS-LAVVSLVVGANKLY  287 (393)
Q Consensus       213 ~v~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~----~~-~~v~~l~~~~~~l~  287 (393)
                      .+||..+.+.+........-..+++....|+.+..++.|.++|..+..    ....+..    .. ..+..+.+.+..|+
T Consensus       110 ~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~----v~~~I~V~~~g~~~~~lNELe~~~G~ly  185 (262)
T 3nol_A          110 FVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLT----PVRTITVTAHGEELPELNELEWVDGEIF  185 (262)
T ss_dssp             EEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCS----EEEEEECEETTEECCCEEEEEEETTEEE
T ss_pred             EEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCe----EEEEEEeccCCccccccceeEEECCEEE
Confidence            999999998873333333435666666666666667889999988753    2333221    11 22334555444555


Q ss_pred             Eec-CCCcEEEeeCCCcceeeEeccC------------ccceEEEEEc--CCEEEEEe
Q 016224          288 SGS-MDNSIRVWNLETLQCIQTLTEH------------TSVVMSLLCW--DQFLLSCS  330 (393)
Q Consensus       288 sg~-~dg~i~iwd~~~~~~~~~~~~~------------~~~v~~l~~~--~~~l~s~s  330 (393)
                      +.. .+..|.+.|.++++.+..+...            ....+.|+++  .+.|+..+
T Consensus       186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            544 6889999999999998888642            1244889998  34444444

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.75  E-value=8.2e-06  Score=69.47  Aligned_cols=185  Identities=11%  Similarity=0.070  Sum_probs=123.7

Q ss_pred             cEEEEEecCCc--CCEEEEEecCCCCEEEEEeCCC--cEEEEECCCCeEEEEEecCCce--EEEEeCCCEEEEE--cCCe
Q 016224          140 FKLLTQLEGHQ--KVVSGITLPSGSDKLYSGSKDE--TVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIG--VTNF  211 (393)
Q Consensus       140 ~~~~~~l~~h~--~~I~~i~~s~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~--~~~~  211 (393)
                      .+.+.++ .|.  .-...+.|+. +.+..+.+.+|  .|+++|+.+++.+..+..+...  ..+...+..|...  .++.
T Consensus         9 ~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~   86 (243)
T 3mbr_X            9 YRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHE   86 (243)
T ss_dssp             EEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSE
T ss_pred             eEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCE
Confidence            3666777 354  4577999986 55566666654  8999999999999999877553  3334445555544  5789


Q ss_pred             EEEEECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecC--ce---eeEEEEEEcCCEE
Q 016224          212 VKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKG--HS---LAVVSLVVGANKL  286 (393)
Q Consensus       212 i~v~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~--~~---~~v~~l~~~~~~l  286 (393)
                      +.+||..+.+.+........-..++.....|+++..++.|.++|..+..    .+..+.-  +.   ..+..+.+.+..+
T Consensus        87 v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~----~~~~I~V~~~g~~~~~lNeLe~~~G~l  162 (243)
T 3mbr_X           87 GFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQ----QVGSIKVTAGGRPLDNLNELEWVNGEL  162 (243)
T ss_dssp             EEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCC----EEEEEECEETTEECCCEEEEEEETTEE
T ss_pred             EEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCe----EEEEEEEccCCcccccceeeEEeCCEE
Confidence            9999999998883333333446777766677777778999999988753    2333322  11   2345566655555


Q ss_pred             EEec-CCCcEEEeeCCCcceeeEeccC-------------ccceEEEEEc--CCEEEEEe
Q 016224          287 YSGS-MDNSIRVWNLETLQCIQTLTEH-------------TSVVMSLLCW--DQFLLSCS  330 (393)
Q Consensus       287 ~sg~-~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~l~~~--~~~l~s~s  330 (393)
                      ++.. .+..|.+.|.++++.+..+...             ....+.|+++  ++.|+..+
T Consensus       163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            5544 6789999999999998887622             1245889988  34444433

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.72  E-value=6e-06  Score=82.13  Aligned_cols=236  Identities=11%  Similarity=0.068  Sum_probs=144.1

Q ss_pred             eEecCcEEEecCCCeEEEEECCCCcEEEEEecCCc-CCEEEEEecC--CCCEEEEEeC------CCcEEEEECCCCeEEE
Q 016224          116 NWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPS--GSDKLYSGSK------DETVRVWDCASGQCAG  186 (393)
Q Consensus       116 ~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~-~~I~~i~~s~--~~~~l~s~s~------dg~v~iwd~~~~~~~~  186 (393)
                      ....+.+++++.|+.|+.+|..++ +.+..+.... .....+..+|  .+..++.+..      +|.|..+|..+|+.+.
T Consensus       114 ~~~~~~v~v~~~dg~l~alD~~tG-~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W  192 (668)
T 1kv9_A          114 ALWGDKVYVGTLDGRLIALDAKTG-KAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAW  192 (668)
T ss_dssp             EEEBTEEEEECTTSEEEEEETTTC-CEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             EEECCEEEEEcCCCEEEEEECCCC-CEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEE
Confidence            345677888999999999999999 6665554321 0000011111  1345555543      5899999999999998


Q ss_pred             EEecCC--c--------------------------------eEEEEeCCCEEEEEc-CC-------------------eE
Q 016224          187 VINLGG--E--------------------------------VGCMISEGPWIFIGV-TN-------------------FV  212 (393)
Q Consensus       187 ~~~~~~--~--------------------------------~~~~~~~~~~l~~~~-~~-------------------~i  212 (393)
                      .+....  .                                ...+.+...+++++. ++                   .|
T Consensus       193 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v  272 (668)
T 1kv9_A          193 RFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSI  272 (668)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             EecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence            886421  0                                012334566777663 22                   49


Q ss_pred             EEEECCCCcee-eecC--CC-------CcE--EEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCc-------eeec
Q 016224          213 KAWNTQTNTDL-SLSG--PV-------GQV--YAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPA-------ASLK  270 (393)
Q Consensus       213 ~v~d~~~~~~~-~~~~--~~-------~~v--~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~-------~~~~  270 (393)
                      ..+|..+++.+ ....  |.       .+.  ..+.+...   .+++++.+|.++++|..+++......       ..+.
T Consensus       273 ~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d  352 (668)
T 1kv9_A          273 LAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVD  352 (668)
T ss_dssp             EEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEEC
T ss_pred             EEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccc
Confidence            99999999987 3322  21       222  23334443   68889999999999988875321000       0000


Q ss_pred             -Cceee--------------------------EEEEEEcCCEEEE-----------------------------------
Q 016224          271 -GHSLA--------------------------VVSLVVGANKLYS-----------------------------------  288 (393)
Q Consensus       271 -~~~~~--------------------------v~~l~~~~~~l~s-----------------------------------  288 (393)
                       ....+                          -.++.....+++.                                   
T Consensus       353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p  432 (668)
T 1kv9_A          353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP  432 (668)
T ss_dssp             TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred             cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence             00000                          0112222233332                                   


Q ss_pred             -ecCCCcEEEeeCCCcceeeEeccCccce-EEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEee
Q 016224          289 -GSMDNSIRVWNLETLQCIQTLTEHTSVV-MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTH  352 (393)
Q Consensus       289 -g~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  352 (393)
                       ...+|.|..||+.+++.+.++..+.... ..+...+.+++.++.|+.|+.||.++++.+..+...
T Consensus       433 ~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~  498 (668)
T 1kv9_A          433 AAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (668)
T ss_dssp             GGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence             1234889999999999988776543322 345556889999999999999999998887766553

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.71  E-value=6.7e-06  Score=80.29  Aligned_cols=189  Identities=11%  Similarity=0.076  Sum_probs=116.3

Q ss_pred             ecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCC-E--------EEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 016224          118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKV-V--------SGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI  188 (393)
Q Consensus       118 ~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~-I--------~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~  188 (393)
                      ..+.+++++.++.|+-+|..++ +.+-++...... .        ..+++  .+..|+.++.|+.|..+|..+|+.+...
T Consensus        67 ~~g~vyv~~~~~~v~AlD~~tG-~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~  143 (582)
T 1flg_A           67 SDGVIYVTASYSRLFALDAKTG-KRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKK  143 (582)
T ss_dssp             ETTEEEEEETTTEEEEEESSSC-CEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEE
T ss_pred             ECCEEEEEcCCCCEEEEECCCC-cEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeee
Confidence            4556666776555999999999 666555433211 0        11222  3567888999999999999999999887


Q ss_pred             ecCCc-----e--EEEEeCC----C-EEEEEc-------CCeEEEEECCCCcee-eecCCCCcE----------------
Q 016224          189 NLGGE-----V--GCMISEG----P-WIFIGV-------TNFVKAWNTQTNTDL-SLSGPVGQV----------------  232 (393)
Q Consensus       189 ~~~~~-----~--~~~~~~~----~-~l~~~~-------~~~i~v~d~~~~~~~-~~~~~~~~v----------------  232 (393)
                      .....     +  ..+..++    + .++++.       ++.|..+|..+++.+ ........+                
T Consensus       144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~  223 (582)
T 1flg_A          144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA  223 (582)
T ss_dssp             ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred             cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence            65431     1  1112222    2 555543       679999999999876 222110000                


Q ss_pred             -------------------------EEEEEeCC--EEEEEeC--------------------C----CcEEEEEeccCCc
Q 016224          233 -------------------------YAMAVGND--LLFAGTQ--------------------D----GAILAWKFNVTTN  261 (393)
Q Consensus       233 -------------------------~~l~~~~~--~l~~~~~--------------------d----g~I~vwd~~~~~~  261 (393)
                                               ..++++++  ++++++.                    |    +.|..+|..+++.
T Consensus       224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~  303 (582)
T 1flg_A          224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV  303 (582)
T ss_dssp             TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred             ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence                                     12445554  6665552                    2    5799999988754


Q ss_pred             cccCceeecCc--------eeeEEE-EE-EcCC---EEEEecCCCcEEEeeCCCcceeeEecc
Q 016224          262 CFEPAASLKGH--------SLAVVS-LV-VGAN---KLYSGSMDNSIRVWNLETLQCIQTLTE  311 (393)
Q Consensus       262 ~~~~~~~~~~~--------~~~v~~-l~-~~~~---~l~sg~~dg~i~iwd~~~~~~~~~~~~  311 (393)
                      .+..  ....|        ..++.. .. .+++   .++.++.+|.++++|.++++.+..+..
T Consensus       304 ~W~~--q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~  364 (582)
T 1flg_A          304 KWFY--QHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF  364 (582)
T ss_dssp             EEEE--ESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             EEEE--eCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence            3321  11112        123322 11 3453   688899999999999999998876643

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.68  E-value=3e-05  Score=75.50  Aligned_cols=232  Identities=15%  Similarity=0.089  Sum_probs=140.2

Q ss_pred             EecCcEEEecCCCeEEEEECCCCcEEEEEec--CCcC--CEEEEEecC--CCCEEEEEeC------CCcEEEEECCCCeE
Q 016224          117 WVQGNCMYGEKCKFLHSWTVGDGFKLLTQLE--GHQK--VVSGITLPS--GSDKLYSGSK------DETVRVWDCASGQC  184 (393)
Q Consensus       117 ~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~--~h~~--~I~~i~~s~--~~~~l~s~s~------dg~v~iwd~~~~~~  184 (393)
                      ...+.+++++.|+.|..+|..++ +.+.+..  .+..  .+.   -+|  .+..++.++.      ++.|..+|..+|+.
T Consensus       113 ~~~~~v~v~~~dg~l~alD~~tG-~~~W~~~~~~~~~~~~~~---~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~  188 (571)
T 2ad6_A          113 YGAGQIVKKQANGHLLALDAKTG-KINWEVEVCDPKVGSTLT---QAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGEL  188 (571)
T ss_dssp             EETTEEEEECTTSEEEEEETTTC-CEEEEEECCCGGGTCBCC---SCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred             EECCEEEEEeCCCEEEEEECCCC-CEEEEecCCCCCccceec---cCCEEECCEEEEEecCCccCCCCEEEEEECCCCcE
Confidence            45667888999999999999999 5555443  2111  111   111  1345666654      79999999999999


Q ss_pred             EEEEecCCce-----------------------------------------EEEEeCCCEEEEEcC--------------
Q 016224          185 AGVINLGGEV-----------------------------------------GCMISEGPWIFIGVT--------------  209 (393)
Q Consensus       185 ~~~~~~~~~~-----------------------------------------~~~~~~~~~l~~~~~--------------  209 (393)
                      +..+......                                         ..+......++.+..              
T Consensus       189 ~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~  268 (571)
T 2ad6_A          189 KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDN  268 (571)
T ss_dssp             EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred             EEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCc
Confidence            9888754321                                         122234455655531              


Q ss_pred             ---CeEEEEECCCCcee-eec--CC--------CCcEE-EEEEeC---CEEEEEeCCCcEEEEEeccCCccccCcee---
Q 016224          210 ---NFVKAWNTQTNTDL-SLS--GP--------VGQVY-AMAVGN---DLLFAGTQDGAILAWKFNVTTNCFEPAAS---  268 (393)
Q Consensus       210 ---~~i~v~d~~~~~~~-~~~--~~--------~~~v~-~l~~~~---~~l~~~~~dg~I~vwd~~~~~~~~~~~~~---  268 (393)
                         +.|..+|..+++.+ ...  .|        ..++. ......   ..++.++.+|.++++|..+++..+.....   
T Consensus       269 ~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~  348 (571)
T 2ad6_A          269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAV  348 (571)
T ss_dssp             TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred             eeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCc
Confidence               25999999999877 322  22        12222 111223   25677889999999998877532211000   


Q ss_pred             -----ec-CceeeE--------------------------EEEEEc--CCEEEEec------------------------
Q 016224          269 -----LK-GHSLAV--------------------------VSLVVG--ANKLYSGS------------------------  290 (393)
Q Consensus       269 -----~~-~~~~~v--------------------------~~l~~~--~~~l~sg~------------------------  290 (393)
                           +. ....++                          ..++++  ..+|++..                        
T Consensus       349 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~  428 (571)
T 2ad6_A          349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT  428 (571)
T ss_dssp             CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred             cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccc
Confidence                 00 000000                          012233  33444432                        


Q ss_pred             -------------CCCcEEEeeCCCcceeeEeccCccce-EEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEee
Q 016224          291 -------------MDNSIRVWNLETLQCIQTLTEHTSVV-MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTH  352 (393)
Q Consensus       291 -------------~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  352 (393)
                                   .++.|..||+.+++.+.++....... ..+...+..++.++.|+.|+.||.++++.+..+...
T Consensus       429 ~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~  504 (571)
T 2ad6_A          429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence                         35889999999999888776432211 223345788888999999999999999887776543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.68  E-value=0.0001  Score=74.98  Aligned_cols=269  Identities=10%  Similarity=0.076  Sum_probs=165.9

Q ss_pred             eEEeeEe-cCcEEEecCCCeEEEEECCCCcEEEEEe-cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 016224          112 ILCRNWV-QGNCMYGEKCKFLHSWTVGDGFKLLTQL-EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN  189 (393)
Q Consensus       112 i~c~~~~-~~~~~~g~~dg~i~vwd~~~~~~~~~~l-~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  189 (393)
                      |.++... .+.++.|+.++-|..|+..++ +..... ..+...|.+|...+++.+ ..++.++-|.+||..+++......
T Consensus       175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~g~l-wigt~~~Gl~~~~~~~~~~~~~~~  252 (795)
T 4a2l_A          175 IASTLYRQGDQIYIGTSTDGLYTYSITQK-TFEKVIPILGTKQIQAILQQSPTRI-WVATEGAGLFLINPKTKEIKNYLH  252 (795)
T ss_dssp             CEEEEEEETTEEEEEESSSCEEEEETTTC-CEEECC----CCCEEEEEEEETTEE-EEEEBSSCEEEEETTTTEEEEECC
T ss_pred             eEEEEECCCCCEEEEECCCCEEEEeCCCC-eEEEecCCCCCCeeEEEEEcCCCCE-EEEECCCCeEEEeCCCCeEEEeec
Confidence            6777665 456667877666889998766 332221 224567999988777764 445555458999988776544322


Q ss_pred             c--------CCceEEEEe--CCCEEEEEcCCeEEEEECCCCceeeecC--------CCCcEEEEEEeCC-EEEEEeCCCc
Q 016224          190 L--------GGEVGCMIS--EGPWIFIGVTNFVKAWNTQTNTDLSLSG--------PVGQVYAMAVGND-LLFAGTQDGA  250 (393)
Q Consensus       190 ~--------~~~~~~~~~--~~~~l~~~~~~~i~v~d~~~~~~~~~~~--------~~~~v~~l~~~~~-~l~~~~~dg~  250 (393)
                      .        ...+.++..  ++.+.++.. +.|.+|+..++....+..        ....|.++..+++ .|.+|+.++-
T Consensus       253 ~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~G  331 (795)
T 4a2l_A          253 SPSNPKSISSNYIRSLAMDSQNRLWIGTF-NDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGG  331 (795)
T ss_dssp             CTTCTTSCSCSBEEEEEECTTSCEEEEES-SCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSC
T ss_pred             CCCCccccCCCeEEEEEEcCCCCEEEEeC-ChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCC
Confidence            1        133555543  455554444 478999988876554321        2357999998887 8888888888


Q ss_pred             EEEEEeccCCccccCceee----cCceeeEEEEEEcC-CEEEEecCCCcEEEeeCCCcceeeEecc--------CccceE
Q 016224          251 ILAWKFNVTTNCFEPAASL----KGHSLAVVSLVVGA-NKLYSGSMDNSIRVWNLETLQCIQTLTE--------HTSVVM  317 (393)
Q Consensus       251 I~vwd~~~~~~~~~~~~~~----~~~~~~v~~l~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~  317 (393)
                      |..|+......  ......    .-....|.++..+. ..|..|+.++-|..||..+++.......        ....|.
T Consensus       332 l~~~~~~~~~~--~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~  409 (795)
T 4a2l_A          332 LNYYHPIRNRF--KNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK  409 (795)
T ss_dssp             EEEECGGGGSS--EEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE
T ss_pred             eEEeCCCcccc--eEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE
Confidence            99998765421  111100    01234688888874 4688888888899999887654332211        235688


Q ss_pred             EEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEee---cCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          318 SLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTH---NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       318 ~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      ++..+  +..|..|+.++-|.+||..+++ ...+...   .....+.++...++  + . |..|+.+ -|.+|+..+++
T Consensus       410 ~i~~d~~g~~lWigt~~~Gl~~~d~~~~~-~~~~~~~~~~l~~~~v~~i~~d~~--g-~-lwigt~~-Gl~~~~~~~~~  482 (795)
T 4a2l_A          410 AVYVDEKKSLVYIGTHAGGLSILHRNSGQ-VENFNQRNSQLVNENVYAILPDGE--G-N-LWLGTLS-ALVRFNPEQRS  482 (795)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEETTTCC-EEEECTTTSCCSCSCEEEEEECSS--S-C-EEEEESS-CEEEEETTTTE
T ss_pred             EEEEcCCCCEEEEEeCcCceeEEeCCCCc-EEEeecCCCCcCCCeeEEEEECCC--C-C-EEEEecC-ceeEEeCCCCe
Confidence            88876  3438888888889999987654 3332210   11234666654332  2 2 4445554 47888876643

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.67  E-value=3.3e-06  Score=72.58  Aligned_cols=182  Identities=10%  Similarity=0.121  Sum_probs=122.1

Q ss_pred             EEEEEecCCc--CCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce--EEEEeCCCEEEEE--cCCeEEE
Q 016224          141 KLLTQLEGHQ--KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIG--VTNFVKA  214 (393)
Q Consensus       141 ~~~~~l~~h~--~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~--~~~~i~v  214 (393)
                      +.+.++. |.  .-...|.|+ ++.+..+.+.+|.|+++|+++++.+..+ .....  ..+...+..|...  .++.+.+
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V  120 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFT  120 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEE
T ss_pred             EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEE
Confidence            4555553 43  345788887 4566777888899999999999998888 65543  2344444444443  5789999


Q ss_pred             EECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecC--ce---eeEEEEEEcCCEEEEe
Q 016224          215 WNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKG--HS---LAVVSLVVGANKLYSG  289 (393)
Q Consensus       215 ~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~--~~---~~v~~l~~~~~~l~sg  289 (393)
                      ||..+.+.+........-..+++....|+.+..++.|.++|..+..    ....+..  +.   ..+..+.+.+..|++.
T Consensus       121 ~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~----v~~~I~V~~~g~~v~~lNeLe~~dG~lyan  196 (268)
T 3nok_A          121 WSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFA----LVGAVQVKLRGQPVELINELECANGVIYAN  196 (268)
T ss_dssp             EETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCC----EEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred             EECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCe----EEEEEEeCCCCcccccccccEEeCCEEEEE
Confidence            9999999883333334446777777777777779999999987753    2333221  11   1334556644455555


Q ss_pred             c-CCCcEEEeeCCCcceeeEeccC-------------ccceEEEEEcC---CEEEEE
Q 016224          290 S-MDNSIRVWNLETLQCIQTLTEH-------------TSVVMSLLCWD---QFLLSC  329 (393)
Q Consensus       290 ~-~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~l~~~~---~~l~s~  329 (393)
                      . .+..|.+.|.++++.+..+...             ....+.|++++   .+++||
T Consensus       197 vw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          197 IWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             ETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             ECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            4 6889999999999998887632             12458899982   355554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.67  E-value=1.2e-05  Score=71.80  Aligned_cols=225  Identities=11%  Similarity=0.045  Sum_probs=127.0

Q ss_pred             EecCCcCCEEEEEecCCCC-EEEEEeCCCcEEEEECCCCeEEEEEecCCceEEE--EeCCCEEEEEc-CCeEEEEECCCC
Q 016224          145 QLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGV-TNFVKAWNTQTN  220 (393)
Q Consensus       145 ~l~~h~~~I~~i~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~-~~~i~v~d~~~~  220 (393)
                      .+..+........|+++++ ++++...++.|..|+. +++..........+..+  .++++++++.. ++.|..|+.. +
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g  116 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G  116 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence            3444555677899999998 5667777899999998 45433222223333333  35778777664 4689999986 5


Q ss_pred             ceeeecCC-----CCcEEEEEEeCC--EEEE----EeC-------------CCcEEEEEeccCCccccCceeecCceeeE
Q 016224          221 TDLSLSGP-----VGQVYAMAVGND--LLFA----GTQ-------------DGAILAWKFNVTTNCFEPAASLKGHSLAV  276 (393)
Q Consensus       221 ~~~~~~~~-----~~~v~~l~~~~~--~l~~----~~~-------------dg~I~vwd~~~~~~~~~~~~~~~~~~~~v  276 (393)
                      +...+...     ...+..+.++++  ++++    |..             .+.|..+|..++..  .  . +. .....
T Consensus       117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~--~--~-~~-~~~~p  190 (305)
T 3dr2_A          117 QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL--Q--R-MA-DLDHP  190 (305)
T ss_dssp             CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC--E--E-EE-EESSE
T ss_pred             CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE--E--E-Ee-cCCCC
Confidence            44332221     134567888887  4444    332             24566666544421  1  1 11 22334


Q ss_pred             EEEEEc--CCEEEEecCC------CcEEEeeCCCccee--eEe-ccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCC
Q 016224          277 VSLVVG--ANKLYSGSMD------NSIRVWNLETLQCI--QTL-TEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDS  343 (393)
Q Consensus       277 ~~l~~~--~~~l~sg~~d------g~i~iwd~~~~~~~--~~~-~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~  343 (393)
                      ..++++  ++.|+.+...      +.|.+||+......  ..+ .........+.++  ++ |.++..+ .|.+|+. ++
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~g  267 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-DG  267 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-TS
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-CC
Confidence            556665  5567666554      78999998754311  111 1112233456666  55 5555544 4999998 45


Q ss_pred             cceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          344 GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       344 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      +.+..+....   .+..++|.++.   ..|+.++.++ |..+++
T Consensus       268 ~~~~~~~~~~---~~~~~~f~~d~---~~L~it~~~~-l~~~~~  304 (305)
T 3dr2_A          268 QLLGHIPTPG---TASNCTFDQAQ---QRLFITGGPC-LWMLPL  304 (305)
T ss_dssp             CEEEEEECSS---CCCEEEECTTS---CEEEEEETTE-EEEEEC
T ss_pred             CEEEEEECCC---ceeEEEEeCCC---CEEEEEcCCe-EEEEEC
Confidence            5554444322   36778887443   2666666654 444443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.65  E-value=7.2e-07  Score=81.71  Aligned_cols=230  Identities=6%  Similarity=-0.051  Sum_probs=140.8

Q ss_pred             EeeEecCc--EEEec----------CCCeEEEEECCCCcEEEEEecCC-------cCCEEEEEecCCCCEEEEEeC--CC
Q 016224          114 CRNWVQGN--CMYGE----------KCKFLHSWTVGDGFKLLTQLEGH-------QKVVSGITLPSGSDKLYSGSK--DE  172 (393)
Q Consensus       114 c~~~~~~~--~~~g~----------~dg~i~vwd~~~~~~~~~~l~~h-------~~~I~~i~~s~~~~~l~s~s~--dg  172 (393)
                      .+.+++++  ++++.          .++.|.+||..+. +.+.++..+       ......++|+||+++|+++..  +.
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~-~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~  147 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF-LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA  147 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC-CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC-CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCC
Confidence            57777763  34443          4789999999998 788887533       123457899999999999875  45


Q ss_pred             cEEE--EECCCCeEEEEEecCCceEEEEeCCC--EEEEEcCCeEEEEECCC-----Cceee-----ecCCCCcEEEEEEe
Q 016224          173 TVRV--WDCASGQCAGVINLGGEVGCMISEGP--WIFIGVTNFVKAWNTQT-----NTDLS-----LSGPVGQVYAMAVG  238 (393)
Q Consensus       173 ~v~i--wd~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~i~v~d~~~-----~~~~~-----~~~~~~~v~~l~~~  238 (393)
                      .|.+  +|..+   +..+..+.... +.+++.  +++.+.++.+.+.++.+     ++...     +.-...+.   ...
T Consensus       148 ~v~V~~iD~~t---v~~i~v~~~~~-~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~~~  220 (368)
T 1mda_H          148 AAGLSVPGASD---DQLTKSASCFH-IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---QAN  220 (368)
T ss_dssp             EEEEEETTTEE---EEEEECSSCCC-CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---EET
T ss_pred             eEEEEEEchhh---ceEEECCCceE-EccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---ccc
Confidence            7888  99877   55555443221 233332  33334677777788876     33221     11112222   222


Q ss_pred             -CCEEEEEeCCCcEEEEEeccCCccccCceee----------cCceeeEEEEEEcCCEEEEecC---------CCcEEEe
Q 016224          239 -NDLLFAGTQDGAILAWKFNVTTNCFEPAASL----------KGHSLAVVSLVVGANKLYSGSM---------DNSIRVW  298 (393)
Q Consensus       239 -~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~----------~~~~~~v~~l~~~~~~l~sg~~---------dg~i~iw  298 (393)
                       ...++..+. +.|.+.|+............+          .........+..++++++.+..         ++.+.++
T Consensus       221 ~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~Vi  299 (368)
T 1mda_H          221 YPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV  299 (368)
T ss_dssp             TTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEE
T ss_pred             cCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEE
Confidence             225555555 899999986532110000000          0011112356667777665432         2356699


Q ss_pred             eCCCcceeeEeccCccceEEEEEc--CC-EEEEEe-CCCcEEEEEcCCCcceEEEEeec
Q 016224          299 NLETLQCIQTLTEHTSVVMSLLCW--DQ-FLLSCS-LDKTIKVWFATDSGNLEVTYTHN  353 (393)
Q Consensus       299 d~~~~~~~~~~~~~~~~v~~l~~~--~~-~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~  353 (393)
                      |+.+++.+.++.... ....+.++  ++ .+++.. .++.|.++|+.+.+.+..+....
T Consensus       300 D~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~  357 (368)
T 1mda_H          300 TASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK  357 (368)
T ss_dssp             ESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred             ECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC
Confidence            999999999887544 46677776  55 566666 59999999999887776665443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.64  E-value=2e-05  Score=77.00  Aligned_cols=226  Identities=11%  Similarity=0.012  Sum_probs=136.0

Q ss_pred             EEEecCCCeEEEEECCCCcEEEEEecCCc----CCEEE-EEecCCCCEEEEEe------CCCcEEEEECCCCeEEEEEec
Q 016224          122 CMYGEKCKFLHSWTVGDGFKLLTQLEGHQ----KVVSG-ITLPSGSDKLYSGS------KDETVRVWDCASGQCAGVINL  190 (393)
Q Consensus       122 ~~~g~~dg~i~vwd~~~~~~~~~~l~~h~----~~I~~-i~~s~~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~  190 (393)
                      +++++.|+.|..+|..++ +.+-......    ..+++ -.+. ++ .|+.++      .+|.|..+|.++|+.+..+..
T Consensus       124 V~v~t~dg~l~AlDa~TG-~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETG-ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             EEEECTTSEEEEEETTTC-CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             EEEEcCCCEEEEEECCCC-CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence            788999999999999999 5555443221    01111 0111 33 555554      389999999999999988875


Q ss_pred             CCce-----------------------------------------EEEEeCCCEEEEEc-C----------------CeE
Q 016224          191 GGEV-----------------------------------------GCMISEGPWIFIGV-T----------------NFV  212 (393)
Q Consensus       191 ~~~~-----------------------------------------~~~~~~~~~l~~~~-~----------------~~i  212 (393)
                      ....                                         ..+.....+++.+. +                +.|
T Consensus       201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv  280 (599)
T 1w6s_A          201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI  280 (599)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred             CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence            4321                                         12234556666653 2                379


Q ss_pred             EEEECCCCcee-eec--CCC--------CcEEEEEE---eC---CEEEEEeCCCcEEEEEeccCCccccCcee-------
Q 016224          213 KAWNTQTNTDL-SLS--GPV--------GQVYAMAV---GN---DLLFAGTQDGAILAWKFNVTTNCFEPAAS-------  268 (393)
Q Consensus       213 ~v~d~~~~~~~-~~~--~~~--------~~v~~l~~---~~---~~l~~~~~dg~I~vwd~~~~~~~~~~~~~-------  268 (393)
                      ..+|..+++.+ .++  .|.        .++. +..   ..   ..++.++.+|.++++|..+++..+.....       
T Consensus       281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~  359 (599)
T 1w6s_A          281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFK  359 (599)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             EEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccc
Confidence            99999999887 322  221        1222 222   23   25777889999999998877532211000       


Q ss_pred             -ec-CceeeE--------------------------EEEEEc--CCEEEE------------------------------
Q 016224          269 -LK-GHSLAV--------------------------VSLVVG--ANKLYS------------------------------  288 (393)
Q Consensus       269 -~~-~~~~~v--------------------------~~l~~~--~~~l~s------------------------------  288 (393)
                       .. ....++                          ..++++  ..++++                              
T Consensus       360 ~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  439 (599)
T 1w6s_A          360 SVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMY  439 (599)
T ss_dssp             EECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             ccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceec
Confidence             00 000000                          011111  111111                              


Q ss_pred             ---ec------CCCcEEEeeCCCcceeeEeccCccce-EEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEe
Q 016224          289 ---GS------MDNSIRVWNLETLQCIQTLTEHTSVV-MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYT  351 (393)
Q Consensus       289 ---g~------~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  351 (393)
                         .+      .+|.|..||+.+++.+.+........ -.+...+..++.++.|+.|+.||.++++.+..+..
T Consensus       440 ~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l  512 (599)
T 1w6s_A          440 PGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (599)
T ss_dssp             ECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence               01      45889999999999887775322111 12445688888899999999999999998777654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.63  E-value=9.7e-06  Score=69.68  Aligned_cols=189  Identities=7%  Similarity=0.018  Sum_probs=124.7

Q ss_pred             eEEEEEecCCce--EEEEeCCCEEEEE--cCCeEEEEECCCCceeeec-CCCCcEEEEEEeCC-EEEEEeCCCcEEEEEe
Q 016224          183 QCAGVINLGGEV--GCMISEGPWIFIG--VTNFVKAWNTQTNTDLSLS-GPVGQVYAMAVGND-LLFAGTQDGAILAWKF  256 (393)
Q Consensus       183 ~~~~~~~~~~~~--~~~~~~~~~l~~~--~~~~i~v~d~~~~~~~~~~-~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~  256 (393)
                      +.+.++.+....  ..+..++..|..+  .++.|+++|+++++.+... .....-..+++.++ ++++.-.++.+.+||.
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~  123 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSG  123 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEET
T ss_pred             EEEEEEcCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEEC
Confidence            455666655433  3444344555543  6678999999999987332 22222345777777 5555557899999999


Q ss_pred             ccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCc--c---ceEEEEEcCCEEEEEe-
Q 016224          257 NVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHT--S---VVMSLLCWDQFLLSCS-  330 (393)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~--~---~v~~l~~~~~~l~s~s-  330 (393)
                      .+.    +.+.++... ..-..++++++.|+.+..++.|.++|..+.+.+.++....  .   .++.+.+.+..|.+.. 
T Consensus       124 ~Tl----~~~~ti~~~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw  198 (268)
T 3nok_A          124 MPP----QRERTTRYS-GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIW  198 (268)
T ss_dssp             TTT----EEEEEEECS-SCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEET
T ss_pred             CcC----cEEEEEeCC-CceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEEC
Confidence            876    444444422 2235677888888888789999999999999988876422  2   3456677644555444 


Q ss_pred             CCCcEEEEEcCCCcceEEEEeec-----------CCccEEEEEeeeCCCCCcEEEEEeC
Q 016224          331 LDKTIKVWFATDSGNLEVTYTHN-----------EEHGVLALCGMPDSEGKPVLLCSCN  378 (393)
Q Consensus       331 ~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~l~s~s~  378 (393)
                      .+..|.+.|..+++.+..+....           ...-...+++.|+.  +++++||-.
T Consensus       199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~--~rlfVTGK~  255 (268)
T 3nok_A          199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGS--GRIFMTGKL  255 (268)
T ss_dssp             TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTT--CCEEEEETT
T ss_pred             CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCC--CEEEEeCCC
Confidence            67899999999988777766431           12346778988764  457777743

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.63  E-value=0.00013  Score=74.05  Aligned_cols=269  Identities=10%  Similarity=0.055  Sum_probs=162.4

Q ss_pred             cceEEeeEe-cCcEEEecCCCeEEEEECCCCcEEEEEecC-------CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 016224          110 TDILCRNWV-QGNCMYGEKCKFLHSWTVGDGFKLLTQLEG-------HQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (393)
Q Consensus       110 ~~i~c~~~~-~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~-------h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~  181 (393)
                      ..|.++... .+.+..|+.++-|.+||..++ +.......       ....|.+|...+++.+.+ |+.+ -|.+||..+
T Consensus       215 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~  291 (795)
T 4a2l_A          215 KQIQAILQQSPTRIWVATEGAGLFLINPKTK-EIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGT  291 (795)
T ss_dssp             CCEEEEEEEETTEEEEEEBSSCEEEEETTTT-EEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTT
T ss_pred             CeeEEEEEcCCCCEEEEECCCCeEEEeCCCC-eEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCC
Confidence            356666654 446677876656889998776 44332221       246799999988887544 5555 589999887


Q ss_pred             CeEEEEEec--------CCceEEEEe--CCCEEEEEcCCeEEEEECCCCceeeecC-------CCCcEEEEEEeCC-EEE
Q 016224          182 GQCAGVINL--------GGEVGCMIS--EGPWIFIGVTNFVKAWNTQTNTDLSLSG-------PVGQVYAMAVGND-LLF  243 (393)
Q Consensus       182 ~~~~~~~~~--------~~~~~~~~~--~~~~l~~~~~~~i~v~d~~~~~~~~~~~-------~~~~v~~l~~~~~-~l~  243 (393)
                      ++.......        ...+.++..  ++.+-+...++-|..|+..+.....+..       ....|.++..+++ .|.
T Consensus       292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW  371 (795)
T 4a2l_A          292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW  371 (795)
T ss_dssp             TEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEE
T ss_pred             CeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEE
Confidence            765443221        123555543  5666665667789999877655432221       2456899998877 788


Q ss_pred             EEeCCCcEEEEEeccCCccccCceee------cCceeeEEEEEEc-CCE-EEEecCCCcEEEeeCCCcceeeEec----c
Q 016224          244 AGTQDGAILAWKFNVTTNCFEPAASL------KGHSLAVVSLVVG-ANK-LYSGSMDNSIRVWNLETLQCIQTLT----E  311 (393)
Q Consensus       244 ~~~~dg~I~vwd~~~~~~~~~~~~~~------~~~~~~v~~l~~~-~~~-l~sg~~dg~i~iwd~~~~~~~~~~~----~  311 (393)
                      +|+.++-|..|+..+...  ......      .-....|.++..+ ... |..|+.++-|.+||..+++......    .
T Consensus       372 iGt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l  449 (795)
T 4a2l_A          372 IGTNDGGLNLYNPITQRF--TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQL  449 (795)
T ss_dssp             EEESSSCEEEECTTTCCE--EEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCC
T ss_pred             EEECCCCeEEEcCCCCcE--EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCc
Confidence            889888899998765421  111000      0123568888875 334 8888887889999998776433221    1


Q ss_pred             CccceEEEEEc-CCEEEEEeCCCcEEEEEcCCCcceEEEEee-----cCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEE
Q 016224          312 HTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTH-----NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFY  385 (393)
Q Consensus       312 ~~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iw  385 (393)
                      ....|.++..+ ...|..|+. +.|.+||..+.. ...+...     .....+.++...++  + . |..|+. +-|..|
T Consensus       450 ~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~d~~--g-~-lWigt~-~Gl~~~  522 (795)
T 4a2l_A          450 VNENVYAILPDGEGNLWLGTL-SALVRFNPEQRS-FTTIEKEKDGTPVVSKQITTLFRDSH--K-R-LWIGGE-EGLSVF  522 (795)
T ss_dssp             SCSCEEEEEECSSSCEEEEES-SCEEEEETTTTE-EEECCBCTTCCBCCCCCEEEEEECTT--C-C-EEEEES-SCEEEE
T ss_pred             CCCeeEEEEECCCCCEEEEec-CceeEEeCCCCe-EEEccccccccccCCceEEEEEECCC--C-C-EEEEeC-CceEEE
Confidence            34568888877 344555555 568889986543 2222211     11234666654332  2 2 444445 457778


Q ss_pred             eCCce
Q 016224          386 DLPSV  390 (393)
Q Consensus       386 d~~s~  390 (393)
                      +..+.
T Consensus       523 ~~~~~  527 (795)
T 4a2l_A          523 KQEGL  527 (795)
T ss_dssp             EEETT
T ss_pred             eCCCC
Confidence            76543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.62  E-value=8.7e-06  Score=74.01  Aligned_cols=227  Identities=12%  Similarity=0.019  Sum_probs=130.2

Q ss_pred             cceEEeeEecC-cEEEec---CCCeEEEEECCCCcEEEEEe-------cCCcCCEEEEEecCCCCEEEEEeC-----CCc
Q 016224          110 TDILCRNWVQG-NCMYGE---KCKFLHSWTVGDGFKLLTQL-------EGHQKVVSGITLPSGSDKLYSGSK-----DET  173 (393)
Q Consensus       110 ~~i~c~~~~~~-~~~~g~---~dg~i~vwd~~~~~~~~~~l-------~~h~~~I~~i~~s~~~~~l~s~s~-----dg~  173 (393)
                      .....++++++ .++++.   .++.++||.+.++ ++. .+       ..|-..+..|+++++++++++-..     ++.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g-~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD-GLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT-EEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC-Cee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence            35566777755 444432   2343556655455 432 22       235578999999999875555433     578


Q ss_pred             EEEEECCCCeEEEEEecCCc-------e--EEEEeCCCEEEEE-----cCCeEEEEECCCCceeeec-CC----------
Q 016224          174 VRVWDCASGQCAGVINLGGE-------V--GCMISEGPWIFIG-----VTNFVKAWNTQTNTDLSLS-GP----------  228 (393)
Q Consensus       174 v~iwd~~~~~~~~~~~~~~~-------~--~~~~~~~~~l~~~-----~~~~i~v~d~~~~~~~~~~-~~----------  228 (393)
                      |.+||+.+++.+..+..+..       .  ..+.+++..+.++     .++.|.+||+.+++..... .|          
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence            99999999998887765321       1  2233344455443     3569999999887655322 21          


Q ss_pred             -------------------CCcEEEEEEeCC--EEEEEeCCC-cEEEEEeccCCc---c-ccCce--eecCceeeEEEEE
Q 016224          229 -------------------VGQVYAMAVGND--LLFAGTQDG-AILAWKFNVTTN---C-FEPAA--SLKGHSLAVVSLV  280 (393)
Q Consensus       229 -------------------~~~v~~l~~~~~--~l~~~~~dg-~I~vwd~~~~~~---~-~~~~~--~~~~~~~~v~~l~  280 (393)
                                         ...+..|+++++  .|+++..++ .|..++......   . .+...  ...++......++
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia  254 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGIS  254 (343)
T ss_dssp             EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEE
T ss_pred             eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEE
Confidence                               023578999988  666666555 555554321110   0 00000  1111222233345


Q ss_pred             E--cCCEEEEecCCCcEEEeeCCCcceeeEecc-CccceEEEEEc--CCEEEEEeCCCcEEEE
Q 016224          281 V--GANKLYSGSMDNSIRVWNLETLQCIQTLTE-HTSVVMSLLCW--DQFLLSCSLDKTIKVW  338 (393)
Q Consensus       281 ~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~--~~~l~s~s~dg~i~iw  338 (393)
                      +  +++++++...++.|.+||..+++....... +.....++++.  +.++++.+..+.+.+|
T Consensus       255 ~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          255 IDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             ECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred             ECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence            5  467888888899999999856654333322 23456788886  4555665554444443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.59  E-value=2.6e-06  Score=77.57  Aligned_cols=232  Identities=13%  Similarity=0.058  Sum_probs=129.6

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEe--CCCcEEEEECCCCeEEEEEec--------CCceEEEE--eCCCEEEEEc
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGS--KDETVRVWDCASGQCAGVINL--------GGEVGCMI--SEGPWIFIGV  208 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~--------~~~~~~~~--~~~~~l~~~~  208 (393)
                      +.+..+.   .....|+++++++++++..  .++.++||.+.+++.. .+..        -..+..+.  ++++++++..
T Consensus        10 ~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~   85 (343)
T 2qe8_A           10 EVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDN   85 (343)
T ss_dssp             EEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEEC
T ss_pred             EEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcC
Confidence            4555544   6889999999999988864  2343566665555532 2211        11233332  4566666553


Q ss_pred             ------CCeEEEEECCCCcee-eecC------CCCcEEEEEEeCC--E-EEEEe---CCCcEEEEEeccCCccccC----
Q 016224          209 ------TNFVKAWNTQTNTDL-SLSG------PVGQVYAMAVGND--L-LFAGT---QDGAILAWKFNVTTNCFEP----  265 (393)
Q Consensus       209 ------~~~i~v~d~~~~~~~-~~~~------~~~~v~~l~~~~~--~-l~~~~---~dg~I~vwd~~~~~~~~~~----  265 (393)
                            +..|.+||+.+++.+ .+..      +...+..++++++  . +++-.   .++.|.+||+.++......    
T Consensus        86 g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~  165 (343)
T 2qe8_A           86 GNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYP  165 (343)
T ss_dssp             HHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCT
T ss_pred             CCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCC
Confidence                  479999999988854 2221      2235688999864  4 44444   5789999998754311000    


Q ss_pred             -------ceeecCc--------------eeeEEEEEEc--CCEEEEecCCC-cEEEeeCC---Cc-----ceee--Eecc
Q 016224          266 -------AASLKGH--------------SLAVVSLVVG--ANKLYSGSMDN-SIRVWNLE---TL-----QCIQ--TLTE  311 (393)
Q Consensus       266 -------~~~~~~~--------------~~~v~~l~~~--~~~l~sg~~dg-~i~iwd~~---~~-----~~~~--~~~~  311 (393)
                             .....+.              ...+..++++  ++.|+.+..++ .|..++..   .+     +...  ...+
T Consensus       166 ~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g  245 (343)
T 2qe8_A          166 GIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS  245 (343)
T ss_dssp             TTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE
T ss_pred             cccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc
Confidence                   0000000              0124566665  55677766655 55544432   11     1111  1112


Q ss_pred             CccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCC
Q 016224          312 HTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN  380 (393)
Q Consensus       312 ~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg  380 (393)
                      +......++++  +.++++...++.|.+||..+++ +..+...........+++.+++   .++++.+..+
T Consensus       246 ~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~-~~~~~~~~~~~~p~~va~~~~g---~l~v~~~~~~  312 (343)
T 2qe8_A          246 EKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA-YKLLVTDEKLSWTDSFNFGSDG---YLYFDCNQLH  312 (343)
T ss_dssp             ECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE-EEEEEECGGGSCEEEEEECTTS---CEEEEECCGG
T ss_pred             cCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC-EEEEEECCceecCCeeEECCCC---cEEEEeCccc
Confidence            23344456666  6788888888999999984443 3333333223457788887653   3666665443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.54  E-value=0.00025  Score=61.70  Aligned_cols=232  Identities=9%  Similarity=0.027  Sum_probs=133.0

Q ss_pred             CeEEEEECCCCcEE----EEEecCCcCCEEEEEecCCCCEEEEEe-CCCcEEEEECCCCeEEEEEecC-CceEEE--EeC
Q 016224          129 KFLHSWTVGDGFKL----LTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVWDCASGQCAGVINLG-GEVGCM--ISE  200 (393)
Q Consensus       129 g~i~vwd~~~~~~~----~~~l~~h~~~I~~i~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~-~~~~~~--~~~  200 (393)
                      +.|+.++++.....    ...+......+..++|++++..|+.+. ..+.|.+++.........+... .....+  .++
T Consensus        10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~   89 (267)
T 1npe_A           10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL   89 (267)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred             CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEec
Confidence            46788887654210    111222234678999999766666554 5689999999766544433322 233333  334


Q ss_pred             CCEEEEE--cCCeEEEEECCCCceeeec-CCCCcEEEEEEeCC--EEEEEeC---CCcEEEEEeccCCccccCceeecCc
Q 016224          201 GPWIFIG--VTNFVKAWNTQTNTDLSLS-GPVGQVYAMAVGND--LLFAGTQ---DGAILAWKFNVTTNCFEPAASLKGH  272 (393)
Q Consensus       201 ~~~l~~~--~~~~i~v~d~~~~~~~~~~-~~~~~v~~l~~~~~--~l~~~~~---dg~I~vwd~~~~~~~~~~~~~~~~~  272 (393)
                      +..++++  ..+.|.+++........+. ........++++++  .|+.+..   .+.|..+++.....  +.+  ....
T Consensus        90 ~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~--~~~--~~~~  165 (267)
T 1npe_A           90 GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--RIL--AQDN  165 (267)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--EEE--ECTT
T ss_pred             CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc--EEE--EECC
Confidence            5555554  4568999998765433222 22356789999984  5555443   36888888764321  111  1111


Q ss_pred             eeeEEEEEEc--CCEE-EEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCCEEEEEe-CCCcEEEEEcCCCcceEE
Q 016224          273 SLAVVSLVVG--ANKL-YSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCS-LDKTIKVWFATDSGNLEV  348 (393)
Q Consensus       273 ~~~v~~l~~~--~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~  348 (393)
                      ......++++  ++.| ++-...+.|.++|+........+.. ......++.++..|+.+. ..+.|.++|..+++.+..
T Consensus       166 ~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~  244 (267)
T 1npe_A          166 LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDT  244 (267)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEE
Confidence            2234556665  4554 5555678999999986544333332 223356667766666555 468999999987776655


Q ss_pred             EEeecCCccEEEEEeeeC
Q 016224          349 TYTHNEEHGVLALCGMPD  366 (393)
Q Consensus       349 ~~~~~~~~~v~~~~~~~~  366 (393)
                      +..... .....+++.|+
T Consensus       245 i~~g~~-~~p~gi~~~~~  261 (267)
T 1npe_A          245 FHPHKQ-TRLYGITIALS  261 (267)
T ss_dssp             ECCSSC-CCCCCEEEECS
T ss_pred             Eccccc-cccceeeecCc
Confidence            543221 12344555554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.53  E-value=5.9e-05  Score=64.79  Aligned_cols=188  Identities=10%  Similarity=0.035  Sum_probs=120.8

Q ss_pred             eEEEEEecCCce--EEEE-eCCCEEEE-EcCC--eEEEEECCCCceeeecCCCCc--EEEEEEeCCEEEE-EeCCCcEEE
Q 016224          183 QCAGVINLGGEV--GCMI-SEGPWIFI-GVTN--FVKAWNTQTNTDLSLSGPVGQ--VYAMAVGNDLLFA-GTQDGAILA  253 (393)
Q Consensus       183 ~~~~~~~~~~~~--~~~~-~~~~~l~~-~~~~--~i~v~d~~~~~~~~~~~~~~~--v~~l~~~~~~l~~-~~~dg~I~v  253 (393)
                      +.++++.+....  ..+. .++.+..+ |.++  .|+++|+++++.+........  -..+++..+.|+. .-.++.+.+
T Consensus        32 ~vv~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v  111 (262)
T 3nol_A           32 QIVHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFV  111 (262)
T ss_dssp             EEEEEEECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred             EEEEEecCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEE
Confidence            456667665443  3333 34433333 3454  899999999998733222223  3457777774444 446889999


Q ss_pred             EEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCc-----cceEEEEEcCCEEEE
Q 016224          254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHT-----SVVMSLLCWDQFLLS  328 (393)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~l~~~~~~l~s  328 (393)
                      ||..+.    +.+.++.... .-..++++++.|+.+..++.|.++|..+.+.+.++....     ..++.+.+.+..|.+
T Consensus       112 ~D~~t~----~~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lya  186 (262)
T 3nol_A          112 WNIRNL----RQVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFA  186 (262)
T ss_dssp             EETTTC----CEEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEE
T ss_pred             EECccC----cEEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEE
Confidence            999876    4444444221 224667888877777778899999999999988876422     223456666445554


Q ss_pred             Ee-CCCcEEEEEcCCCcceEEEEeec----------CCccEEEEEeeeCCCCCcEEEEEe
Q 016224          329 CS-LDKTIKVWFATDSGNLEVTYTHN----------EEHGVLALCGMPDSEGKPVLLCSC  377 (393)
Q Consensus       329 ~s-~dg~i~iwd~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~l~s~s  377 (393)
                      .. .+..|.+.|..+++.+..+....          .......+++.|+..  +++++|-
T Consensus       187 n~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~--~lfVTGK  244 (262)
T 3nol_A          187 NVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH--RLFVTGK  244 (262)
T ss_dssp             EETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT--EEEEEET
T ss_pred             EEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC--EEEEECC
Confidence            44 68899999999988777765421          122457799988644  4566663

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.53  E-value=9.5e-05  Score=62.92  Aligned_cols=189  Identities=11%  Similarity=0.034  Sum_probs=122.9

Q ss_pred             eEEEEEecCCc--eEEEEeCCCEEEEE--cC--CeEEEEECCCCceeeecCCCC--cEEEEEEeCC-EEEEEeCCCcEEE
Q 016224          183 QCAGVINLGGE--VGCMISEGPWIFIG--VT--NFVKAWNTQTNTDLSLSGPVG--QVYAMAVGND-LLFAGTQDGAILA  253 (393)
Q Consensus       183 ~~~~~~~~~~~--~~~~~~~~~~l~~~--~~--~~i~v~d~~~~~~~~~~~~~~--~v~~l~~~~~-~l~~~~~dg~I~v  253 (393)
                      +.+.++.+...  ...+..++..|..+  ..  ..|+.+|+.+++.........  .-..+++..+ ++...-.++.+.+
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v   89 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFV   89 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred             EEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEE
Confidence            45666665543  23333333455543  33  489999999999883332222  2345677777 4444557899999


Q ss_pred             EEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCc-----cceEEEEEcCCEEEE
Q 016224          254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHT-----SVVMSLLCWDQFLLS  328 (393)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~l~~~~~~l~s  328 (393)
                      ||..+.    +.+.++.... .-..++.++..|+.+..++.|.++|..+.+.+.++....     ..++.+.+.+..|.+
T Consensus        90 ~D~~tl----~~~~ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lya  164 (243)
T 3mbr_X           90 YDLATL----TPRARFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLA  164 (243)
T ss_dssp             EETTTT----EEEEEEECSS-CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEE
T ss_pred             EECCcC----cEEEEEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEE
Confidence            999876    4444444222 225677888877777778999999999999988886432     244667776554554


Q ss_pred             Ee-CCCcEEEEEcCCCcceEEEEeec-----------CCccEEEEEeeeCCCCCcEEEEEeC
Q 016224          329 CS-LDKTIKVWFATDSGNLEVTYTHN-----------EEHGVLALCGMPDSEGKPVLLCSCN  378 (393)
Q Consensus       329 ~s-~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~l~s~s~  378 (393)
                      .. .+..|.+.|..+++.+..+....           ...-...+++.|..  +++++||-.
T Consensus       165 nvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~--~~lfVTGK~  224 (243)
T 3mbr_X          165 NVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEH--DRLFVTGKR  224 (243)
T ss_dssp             EETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTT--TEEEEEETT
T ss_pred             EECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCC--CEEEEECCC
Confidence            44 67899999999988877766331           22345779998764  346677643

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.51  E-value=8.9e-05  Score=72.32  Aligned_cols=256  Identities=11%  Similarity=0.012  Sum_probs=148.2

Q ss_pred             EecCcEEEecCCCeEEEEECCCCcEEEEEecCCcC----CEEE--EEec--CCCC-EEEEEe------CCCcEEEEECCC
Q 016224          117 WVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK----VVSG--ITLP--SGSD-KLYSGS------KDETVRVWDCAS  181 (393)
Q Consensus       117 ~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~----~I~~--i~~s--~~~~-~l~s~s------~dg~v~iwd~~~  181 (393)
                      ...+.+++++.++.|..+|..++ +.+-..+....    .+.+  +...  .+++ .|+.++      .++.|..+|..+
T Consensus       115 ~~~~~v~~~t~dg~l~AlD~~TG-~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t  193 (582)
T 1flg_A          115 IYGDKVFFGTLDASVVALNKNTG-KVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT  193 (582)
T ss_dssp             EETTEEEEEETTTEEEEEESSSC-CEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT
T ss_pred             EECCEEEEEeCCCEEEEEECCCC-CEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCC
Confidence            45677888999999999999999 55555443210    1110  1111  1233 566654      378999999999


Q ss_pred             CeEEEEEecCCce--------------------------------------------EEEEeCCCEEEEEc---------
Q 016224          182 GQCAGVINLGGEV--------------------------------------------GCMISEGPWIFIGV---------  208 (393)
Q Consensus       182 ~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~l~~~~---------  208 (393)
                      |+.+.........                                            ..+.+...+++++.         
T Consensus       194 G~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~  273 (582)
T 1flg_A          194 GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTW  273 (582)
T ss_dssp             CCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGG
T ss_pred             CCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCc
Confidence            9988876542110                                            11222445666543         


Q ss_pred             ------------C----CeEEEEECCCCcee-eec--CCC--------CcEEEEEE---eC---CEEEEEeCCCcEEEEE
Q 016224          209 ------------T----NFVKAWNTQTNTDL-SLS--GPV--------GQVYAMAV---GN---DLLFAGTQDGAILAWK  255 (393)
Q Consensus       209 ------------~----~~i~v~d~~~~~~~-~~~--~~~--------~~v~~l~~---~~---~~l~~~~~dg~I~vwd  255 (393)
                                  +    +.|..+|..+++.+ .++  .|.        .++. +..   ..   ..++.++.+|.++++|
T Consensus       274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD  352 (582)
T 1flg_A          274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVD  352 (582)
T ss_dssp             GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEE
T ss_pred             ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEE
Confidence                        2    47999999999987 332  221        1222 222   22   2678899999999999


Q ss_pred             eccCCccccCcee--------e-------------c---------CceeeE-----------EEEEEcC--CEEEEe---
Q 016224          256 FNVTTNCFEPAAS--------L-------------K---------GHSLAV-----------VSLVVGA--NKLYSG---  289 (393)
Q Consensus       256 ~~~~~~~~~~~~~--------~-------------~---------~~~~~v-----------~~l~~~~--~~l~sg---  289 (393)
                      ..+++..+.....        +             .         .....+           ..+++++  .++++.   
T Consensus       353 ~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~  432 (582)
T 1flg_A          353 RSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANH  432 (582)
T ss_dssp             TTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEEC
T ss_pred             CCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechh
Confidence            8776432110000        0             0         000000           0112221  222221   


Q ss_pred             ------------------------------cCCCcEEEeeCCCcceeeEeccCccce-EEEEEcCCEEEEEeCCCcEEEE
Q 016224          290 ------------------------------SMDNSIRVWNLETLQCIQTLTEHTSVV-MSLLCWDQFLLSCSLDKTIKVW  338 (393)
Q Consensus       290 ------------------------------~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~~~~~~l~s~s~dg~i~iw  338 (393)
                                                    ..+|.|..||+.+++.+.+........ ..+...+.+++.++.|+.++.|
T Consensus       433 ~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~  512 (582)
T 1flg_A          433 WKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAF  512 (582)
T ss_dssp             EEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEE
T ss_pred             cceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEE
Confidence                                          136889999999999887776432221 2244457888899999999999


Q ss_pred             EcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe
Q 016224          339 FATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC  377 (393)
Q Consensus       339 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s  377 (393)
                      |.++++.+..+..... .....+.+..+  +++|+++.+
T Consensus       513 D~~tG~~lW~~~~~~g-~~a~P~~y~~~--G~qYv~~~~  548 (582)
T 1flg_A          513 DAKSGKELWKFQTGSG-IVSPPITWEQD--GEQYLGVTV  548 (582)
T ss_dssp             ETTTCCEEEEEECSSC-CCSCCEEEEET--TEEEEEEEE
T ss_pred             ECCCCCEEEEecCCCC-cccCceEEEEC--CEEEEEEEc
Confidence            9999988877665322 11222444433  444666543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.45  E-value=0.00095  Score=67.58  Aligned_cols=271  Identities=11%  Similarity=0.020  Sum_probs=161.1

Q ss_pred             cceEEeeEecC-cEEEecCCCeEEEEECCCCcEEEEEec-------CCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 016224          110 TDILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLE-------GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (393)
Q Consensus       110 ~~i~c~~~~~~-~~~~g~~dg~i~vwd~~~~~~~~~~l~-------~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~  181 (393)
                      ..|.++....+ .+..|+.. -|.+||..++ +......       .....|.+|...+++. |..|+..+-|.++|..+
T Consensus       211 ~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~  287 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIGTSK-GLALFNANTE-TFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ  287 (781)
T ss_dssp             SSEEEEEECTTCCEEEEETT-EEEEEETTTT-EEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred             CceeEEEEcCCCCEEEEeCC-cHheECCCCC-cEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence            35777766544 57777766 6889998766 3322111       1246799999887775 55666656788999887


Q ss_pred             CeEEEEEe-------c--------CCceEEEEe--CCCEEEEEcCCeEEEEECCCCceeeecC----------CCCcEEE
Q 016224          182 GQCAGVIN-------L--------GGEVGCMIS--EGPWIFIGVTNFVKAWNTQTNTDLSLSG----------PVGQVYA  234 (393)
Q Consensus       182 ~~~~~~~~-------~--------~~~~~~~~~--~~~~l~~~~~~~i~v~d~~~~~~~~~~~----------~~~~v~~  234 (393)
                      ++......       .        ...+.++..  ++.+-+...++-|..++........+..          ....|.+
T Consensus       288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~  367 (781)
T 3v9f_A          288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSS  367 (781)
T ss_dssp             C---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEE
T ss_pred             CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEE
Confidence            65433221       1        123455543  4555555567889999987765443211          2356899


Q ss_pred             EEEeCC-EEEEEeCCCcEEEEEeccCCccccCce-eecCceeeEEEEEEc-CCEEEEecCCCcEEEeeCCCcceeeEec-
Q 016224          235 MAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAA-SLKGHSLAVVSLVVG-ANKLYSGSMDNSIRVWNLETLQCIQTLT-  310 (393)
Q Consensus       235 l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~-~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~-  310 (393)
                      +...++ .|.+|+.++-|..||..+...  .... ........|.++..+ ...|..|+.++-|..+|..+++...... 
T Consensus       368 i~~d~~g~lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~  445 (781)
T 3v9f_A          368 VCDDGQGKLWIGTDGGGINVFENGKRVA--IYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELE  445 (781)
T ss_dssp             EEECTTSCEEEEEBSSCEEEEETTEEEE--ECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCST
T ss_pred             EEEcCCCCEEEEeCCCcEEEEECCCCeE--EEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccC
Confidence            998876 788888778899998765421  1111 011234568888886 4567778877789999988765432211 


Q ss_pred             -cCccceEEEEEc-CCEEEEEeCCCcEEEEEcCCCcceEEEEeec----CCccEEEEEeeeCCCCCcEEEEEeCCCeEEE
Q 016224          311 -EHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHN----EEHGVLALCGMPDSEGKPVLLCSCNDNSVRF  384 (393)
Q Consensus       311 -~~~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~i  384 (393)
                       .....|.++..+ ...|..|+. +.|..||..+.... .+....    ....+.++...++  +  .|..|+.++-|..
T Consensus       446 ~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~--g--~lWigt~~~Gl~~  519 (781)
T 3v9f_A          446 KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVI-HHYDTSNSQLLENFVRSIAQDSE--G--RFWIGTFGGGVGI  519 (781)
T ss_dssp             TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCC-EEECTTTSSCSCSCEEEEEECTT--C--CEEEEESSSCEEE
T ss_pred             CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEE-ecccCcccccccceeEEEEEcCC--C--CEEEEEcCCCEEE
Confidence             234578888887 456666766 56889998654432 222111    0234666654332  2  2555555444777


Q ss_pred             EeCCcee
Q 016224          385 YDLPSVI  391 (393)
Q Consensus       385 wd~~s~~  391 (393)
                      |+..+.+
T Consensus       520 ~~~~~~~  526 (781)
T 3v9f_A          520 YTPDMQL  526 (781)
T ss_dssp             ECTTCCE
T ss_pred             EeCCCCe
Confidence            8876543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.41  E-value=0.00043  Score=70.14  Aligned_cols=270  Identities=14%  Similarity=0.048  Sum_probs=160.6

Q ss_pred             cceEEeeEe-cCcEEEecCCCeEEEEECCCCcEEEEEec-------CCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 016224          110 TDILCRNWV-QGNCMYGEKCKFLHSWTVGDGFKLLTQLE-------GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (393)
Q Consensus       110 ~~i~c~~~~-~~~~~~g~~dg~i~vwd~~~~~~~~~~l~-------~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~  181 (393)
                      ..|.++... .+.+..|+.++-|..||..++ +......       .....|.+|...+++.+.+ |..+ -|.+||..+
T Consensus       163 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~  239 (781)
T 3v9f_A          163 EQTWTATEAEDGKLYIGHVEGGLSILSLNDK-SVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANT  239 (781)
T ss_dssp             CCEEEEEEEETTEEEEEETTTEEEEEETTTT-EEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTT
T ss_pred             cceEEEEECCCCCEEEEecCCCeEEEcCCCC-ceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCC
Confidence            356777665 556778887767889998776 3322111       1235799999888876555 4455 689999887


Q ss_pred             CeEEEEEec--------CCceEEEEe-CCCEEEEEcC-CeEEEEECCCCceeeec---------------CCCCcEEEEE
Q 016224          182 GQCAGVINL--------GGEVGCMIS-EGPWIFIGVT-NFVKAWNTQTNTDLSLS---------------GPVGQVYAMA  236 (393)
Q Consensus       182 ~~~~~~~~~--------~~~~~~~~~-~~~~l~~~~~-~~i~v~d~~~~~~~~~~---------------~~~~~v~~l~  236 (393)
                      ++.......        ...+.++.. ....+.++.. +-|.+++..+.......               -....|.++.
T Consensus       240 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~  319 (781)
T 3v9f_A          240 ETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIF  319 (781)
T ss_dssp             TEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEE
T ss_pred             CcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEE
Confidence            765432211        233455543 3334555544 78889998876543221               1245788998


Q ss_pred             EeCC-EEEEEeCCCcEEEEEeccCCccccCce-------eecCceeeEEEEEEcC-CEEEEecCCCcEEEeeCCCcceee
Q 016224          237 VGND-LLFAGTQDGAILAWKFNVTTNCFEPAA-------SLKGHSLAVVSLVVGA-NKLYSGSMDNSIRVWNLETLQCIQ  307 (393)
Q Consensus       237 ~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~-------~~~~~~~~v~~l~~~~-~~l~sg~~dg~i~iwd~~~~~~~~  307 (393)
                      .+.+ .|.+|+.++-|..++......  ....       ...-....|.++..+. ..|..|+.++-|..||..+++...
T Consensus       320 ~D~~g~lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~  397 (781)
T 3v9f_A          320 QDSFNNIWIGTWGGGINFISNAPPTF--HTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIY  397 (781)
T ss_dssp             ECSSCCEEEEEBSSCEEEECSSCCSC--EEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEEC
T ss_pred             EeCCCCEEEEecCCeEEEeCCCCCcc--eeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEE
Confidence            8877 788888888899988765421  1110       0011234688888874 467788877779999987654322


Q ss_pred             Ee---ccCccceEEEEEc-CCEEEEEeCCCcEEEEEcCCCcceEEEEe-ecCCccEEEEEeeeCCCCCcEEEEEeCCCeE
Q 016224          308 TL---TEHTSVVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLLCSCNDNSV  382 (393)
Q Consensus       308 ~~---~~~~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I  382 (393)
                      ..   ......|.++..+ ...|..|+.++.|..+|..+++ +..+.. ......+.++...+   ++ .|..|+. +-|
T Consensus       398 ~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d~---~g-~lwigt~-~Gl  471 (781)
T 3v9f_A          398 NKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKK-FQIIELEKNELLDVRVFYEDK---NK-KIWIGTH-AGV  471 (781)
T ss_dssp             C-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCE-EEECCSTTTCCCCEEEEEECT---TS-EEEEEET-TEE
T ss_pred             ccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCc-EEEeccCCCCCCeEEEEEECC---CC-CEEEEEC-Cce
Confidence            11   1234568888887 4567778877789999876543 222211 11223466654432   22 3555655 558


Q ss_pred             EEEeCCce
Q 016224          383 RFYDLPSV  390 (393)
Q Consensus       383 ~iwd~~s~  390 (393)
                      .+||..++
T Consensus       472 ~~~~~~~~  479 (781)
T 3v9f_A          472 FVIDLASK  479 (781)
T ss_dssp             EEEESSSS
T ss_pred             EEEeCCCC
Confidence            88887664

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.39  E-value=0.00022  Score=66.08  Aligned_cols=204  Identities=9%  Similarity=0.043  Sum_probs=125.8

Q ss_pred             EecCCCeEEEEECCCC---cEEEEEec------C-CcCCEEEEEecCCCCEEEEEeCC------CcEEEEECCCCeEEEE
Q 016224          124 YGEKCKFLHSWTVGDG---FKLLTQLE------G-HQKVVSGITLPSGSDKLYSGSKD------ETVRVWDCASGQCAGV  187 (393)
Q Consensus       124 ~g~~dg~i~vwd~~~~---~~~~~~l~------~-h~~~I~~i~~s~~~~~l~s~s~d------g~v~iwd~~~~~~~~~  187 (393)
                      .+..++.|+|+|+.+.   .+++++++      . -...-..+...|++ +++++..+      |.|.+.|.++.+.+.+
T Consensus       101 ~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~  179 (462)
T 2ece_A          101 PGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGK  179 (462)
T ss_dssp             EBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEE
T ss_pred             ccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEE
Confidence            4778899999998632   35666663      0 11245667888999 77776655      7899999999999998


Q ss_pred             EecCCce------EEEEeCCCEEEEEc--------------------CCeEEEEECCCCcee-eecC--CCCcEEEEEE-
Q 016224          188 INLGGEV------GCMISEGPWIFIGV--------------------TNFVKAWNTQTNTDL-SLSG--PVGQVYAMAV-  237 (393)
Q Consensus       188 ~~~~~~~------~~~~~~~~~l~~~~--------------------~~~i~v~d~~~~~~~-~~~~--~~~~v~~l~~-  237 (393)
                      +......      ..+.++++.++++.                    .+.|.+||+.+++.. .+..  .......+.| 
T Consensus       180 ~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~  259 (462)
T 2ece_A          180 WEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPL  259 (462)
T ss_dssp             CCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEEC
T ss_pred             EccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEee
Confidence            8744221      23456788888774                    679999999988765 2222  2234556656 


Q ss_pred             -eCC--EEEEEe------CCCcEEEEEeccCCccccCceee--cCc----------------eeeEEE--EEEcCCEEEE
Q 016224          238 -GND--LLFAGT------QDGAILAWKFNVTTNCFEPAASL--KGH----------------SLAVVS--LVVGANKLYS  288 (393)
Q Consensus       238 -~~~--~l~~~~------~dg~I~vwd~~~~~~~~~~~~~~--~~~----------------~~~v~~--l~~~~~~l~s  288 (393)
                       +|+  ++++++      .+++|.+|....+.  ++....+  ...                ......  ++.++++|++
T Consensus       260 ~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~--~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYV  337 (462)
T 2ece_A          260 HDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK--WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYL  337 (462)
T ss_dssp             SSTTCCEEEEEEEEETTTCCEEEEEEEEETTE--EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEE
T ss_pred             ECCCCCEEEEEEeeeccCCCceEEEEEecCCc--eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEE
Confidence             877  444444      56788877665321  1111110  000                112233  4556777665


Q ss_pred             ec-CCCcEEEeeCCC---cceeeEeccCc----------c----ceEEEEE--cCCEEEEEe
Q 016224          289 GS-MDNSIRVWNLET---LQCIQTLTEHT----------S----VVMSLLC--WDQFLLSCS  330 (393)
Q Consensus       289 g~-~dg~i~iwd~~~---~~~~~~~~~~~----------~----~v~~l~~--~~~~l~s~s  330 (393)
                      +. ..+.|.+||+..   .+.+..+....          .    .-..+.+  ++++|+++.
T Consensus       338 Snrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          338 SLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            55 478999999853   45555554320          0    1234444  488888877

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.37  E-value=0.00019  Score=62.15  Aligned_cols=185  Identities=11%  Similarity=0.019  Sum_probs=122.5

Q ss_pred             eEEeeEecC-cEEEec---CCCeEEEEECCCCcEEEEEecCCc-CCEEEEEecCCCCEEEEEe-CCCcEEEEECCCCeEE
Q 016224          112 ILCRNWVQG-NCMYGE---KCKFLHSWTVGDGFKLLTQLEGHQ-KVVSGITLPSGSDKLYSGS-KDETVRVWDCASGQCA  185 (393)
Q Consensus       112 i~c~~~~~~-~~~~g~---~dg~i~vwd~~~~~~~~~~l~~h~-~~I~~i~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~  185 (393)
                      ..-+.|+++ .++.++   .++.|++.|+.++ +.+..+.-.. .-...+++.  ++.|+.+. .++.|.++|..+.+.+
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg-~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTG-KVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTC-CEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCC-CEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            356778874 444433   3689999999999 7777764221 222345554  44565554 5789999999999999


Q ss_pred             EEEecC-CceEEEEeCCCEEEEE-cCCeEEEEECCCCcee-eecC-----CCCcEEEEEEeCCEEEEEe-CCCcEEEEEe
Q 016224          186 GVINLG-GEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSG-----PVGQVYAMAVGNDLLFAGT-QDGAILAWKF  256 (393)
Q Consensus       186 ~~~~~~-~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~-----~~~~v~~l~~~~~~l~~~~-~dg~I~vwd~  256 (393)
                      .++..+ ..-..+.++++.++++ .++.|.++|..+.+.. .+.-     ....+..+.+....+++.. .++.|.+.|.
T Consensus       100 ~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~  179 (266)
T 2iwa_A          100 KNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISA  179 (266)
T ss_dssp             EEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEET
T ss_pred             EEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEEC
Confidence            999866 4444466677766665 5679999999998766 2221     1124677888755554444 5789999999


Q ss_pred             ccCCccccCceeecCc-------------eeeEEEEEEc--CC-EEEEecCCCcEEEeeCCCc
Q 016224          257 NVTTNCFEPAASLKGH-------------SLAVVSLVVG--AN-KLYSGSMDNSIRVWNLETL  303 (393)
Q Consensus       257 ~~~~~~~~~~~~~~~~-------------~~~v~~l~~~--~~-~l~sg~~dg~i~iwd~~~~  303 (393)
                      .++.    .+..+.-.             ......++++  ++ .++++...+.|.+.++...
T Consensus       180 ~tg~----V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          180 KDGT----LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TTCC----EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CCCc----EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            8874    23333211             1244677776  33 5777778889998887654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.27  E-value=0.00019  Score=68.85  Aligned_cols=217  Identities=8%  Similarity=0.087  Sum_probs=129.1

Q ss_pred             EEEecCCCeEEEEECCCCcEEEEEec---------------------C------------C------cCCEEEEEecC--
Q 016224          122 CMYGEKCKFLHSWTVGDGFKLLTQLE---------------------G------------H------QKVVSGITLPS--  160 (393)
Q Consensus       122 ~~~g~~dg~i~vwd~~~~~~~~~~l~---------------------~------------h------~~~I~~i~~s~--  160 (393)
                      +.+|+..|.++|+-+.++ +.++.+.                     .            +      .+.......|.  
T Consensus        18 f~s~g~~g~~~v~g~ps~-r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~   96 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSM-RELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE   96 (595)
T ss_dssp             EECCBTTCEEEEEEETTC-CEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred             EeeCCcCceEEEEecCCc-ceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence            456889999999998887 4444432                     0            0      01222344444  


Q ss_pred             ---CCCEEEEEeCC-CcEEEEECCCCeEEEEEecC--CceEEEE----eCCCEEEEEc-------------------CCe
Q 016224          161 ---GSDKLYSGSKD-ETVRVWDCASGQCAGVINLG--GEVGCMI----SEGPWIFIGV-------------------TNF  211 (393)
Q Consensus       161 ---~~~~l~s~s~d-g~v~iwd~~~~~~~~~~~~~--~~~~~~~----~~~~~l~~~~-------------------~~~  211 (393)
                         ||++|+....+ ..|.+.|+.+.++...+..+  .....+.    +++++++++.                   ++.
T Consensus        97 g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A           97 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             CCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence               78888887664 57999999999998866543  3333332    6888888873                   247


Q ss_pred             EEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCC--------------------------------------cE
Q 016224          212 VKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDG--------------------------------------AI  251 (393)
Q Consensus       212 i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg--------------------------------------~I  251 (393)
                      +.+.|..+.+......-.+....++++++  ++++.+.+.                                      .|
T Consensus       177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            89999998876622111113445566666  665555442                                      24


Q ss_pred             EEEEeccCCccccC-ceeec-CceeeEEEEEEcCCE-EEEecCCCcEEEeeCCCcc------------eeeEeccCccce
Q 016224          252 LAWKFNVTTNCFEP-AASLK-GHSLAVVSLVVGANK-LYSGSMDNSIRVWNLETLQ------------CIQTLTEHTSVV  316 (393)
Q Consensus       252 ~vwd~~~~~~~~~~-~~~~~-~~~~~v~~l~~~~~~-l~sg~~dg~i~iwd~~~~~------------~~~~~~~~~~~v  316 (393)
                      .+.|..+...  .. +..+. +....-..+++++++ ++++..+.+|.++|+.+.+            .+.++... ..-
T Consensus       257 ~VID~~~~~~--~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG-~gP  333 (595)
T 1fwx_A          257 KVVDGRKEAS--SLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG-LGP  333 (595)
T ss_dssp             EEEECSGGGC--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC-SCE
T ss_pred             EEEeCcccCC--ceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC-CCc
Confidence            4444443110  11 11111 111112344556776 5555578999999998753            23333322 234


Q ss_pred             EEEEEc--CCEEEEEeCCCcEEEEEcCC
Q 016224          317 MSLLCW--DQFLLSCSLDKTIKVWFATD  342 (393)
Q Consensus       317 ~~l~~~--~~~l~s~s~dg~i~iwd~~~  342 (393)
                      ..++|+  |...++.-.|++|.+||+.+
T Consensus       334 ~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          334 LHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            667777  53344666799999999976

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.24  E-value=0.00064  Score=60.86  Aligned_cols=223  Identities=9%  Similarity=0.007  Sum_probs=126.5

Q ss_pred             EEeeEecC-c-EEEecCCCeEEEEECCCCcEEEE-EecC------------------CcCCEEEEEecCCCCEEEEEeCC
Q 016224          113 LCRNWVQG-N-CMYGEKCKFLHSWTVGDGFKLLT-QLEG------------------HQKVVSGITLPSGSDKLYSGSKD  171 (393)
Q Consensus       113 ~c~~~~~~-~-~~~g~~dg~i~vwd~~~~~~~~~-~l~~------------------h~~~I~~i~~s~~~~~l~s~s~d  171 (393)
                      .+++|.++ . ++++..++.|..|+..++ +... ....                  ....+..|++.++...|+.+...
T Consensus        22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~  100 (322)
T 2fp8_A           22 NSFTFDSTNKGFYTSVQDGRVIKYEGPNS-GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY  100 (322)
T ss_dssp             CCEECCTTCSSEEEECTTSEEEEECCTTT-CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred             eEEEEcCCCCEEEEEcCCCeEEEECCCCC-ceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence            34555544 3 567778899999998765 2221 1110                  11357899999733456666555


Q ss_pred             CcEEEEECCCCeEEEEEec-C----Cce--EEEEe-CCCEEEEEcC------------------CeEEEEECCCCceeee
Q 016224          172 ETVRVWDCASGQCAGVINL-G----GEV--GCMIS-EGPWIFIGVT------------------NFVKAWNTQTNTDLSL  225 (393)
Q Consensus       172 g~v~iwd~~~~~~~~~~~~-~----~~~--~~~~~-~~~~l~~~~~------------------~~i~v~d~~~~~~~~~  225 (393)
                      +.|..+|..+++....... .    ...  ..+.+ ++.+.++...                  +.|..+|..+++...+
T Consensus       101 ~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  180 (322)
T 2fp8_A          101 YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL  180 (322)
T ss_dssp             TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred             CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence            6688888776543222111 1    112  22334 6666666432                  5688888877665433


Q ss_pred             cCCCCcEEEEEEeCC--EEEEE-eCCCcEEEEEeccCCcc-ccCceeecCceeeEEEEEEc--CCEEEEecC--------
Q 016224          226 SGPVGQVYAMAVGND--LLFAG-TQDGAILAWKFNVTTNC-FEPAASLKGHSLAVVSLVVG--ANKLYSGSM--------  291 (393)
Q Consensus       226 ~~~~~~v~~l~~~~~--~l~~~-~~dg~I~vwd~~~~~~~-~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~--------  291 (393)
                      .........++++++  .|+++ +..+.|.+|++...... .+....+.+    ...++++  +++.++...        
T Consensus       181 ~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g----P~gi~~d~~G~l~va~~~~~~~~~~~  256 (322)
T 2fp8_A          181 LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN----PGNIKRNADGHFWVSSSEELDGNMHG  256 (322)
T ss_dssp             EEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS----EEEEEECTTSCEEEEEEEETTSSTTS
T ss_pred             ccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC----CCCeEECCCCCEEEEecCcccccccC
Confidence            222334567889887  45444 56789999998753210 111111111    4455665  555444433        


Q ss_pred             --CCcEEEeeCCCcceeeEeccCc----cceEEEEEcCCEEE-EEeCCCcEEEEEcC
Q 016224          292 --DNSIRVWNLETLQCIQTLTEHT----SVVMSLLCWDQFLL-SCSLDKTIKVWFAT  341 (393)
Q Consensus       292 --dg~i~iwd~~~~~~~~~~~~~~----~~v~~l~~~~~~l~-s~s~dg~i~iwd~~  341 (393)
                        .+.|..+|.. ++.+..+....    ..+..+.+.+..|+ +....+.|..+++.
T Consensus       257 ~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          257 RVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             CEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred             CCccEEEEECCC-CCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence              4678889874 77777775432    34556666644444 44467788888875

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.15  E-value=0.0031  Score=54.62  Aligned_cols=216  Identities=11%  Similarity=0.060  Sum_probs=117.6

Q ss_pred             EEEEEeCCCcEEEEECCCCeE-----EEEEecC-Cce--EEEEeCCCEEEEE--cCCeEEEEECCCCceeeec-CCCCcE
Q 016224          164 KLYSGSKDETVRVWDCASGQC-----AGVINLG-GEV--GCMISEGPWIFIG--VTNFVKAWNTQTNTDLSLS-GPVGQV  232 (393)
Q Consensus       164 ~l~s~s~dg~v~iwd~~~~~~-----~~~~~~~-~~~--~~~~~~~~~l~~~--~~~~i~v~d~~~~~~~~~~-~~~~~v  232 (393)
                      +|+.+.. +.|+.++++....     ...+..+ ...  ..+.+++..|+.+  ..+.|..++........+. ......
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p   81 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP   81 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence            4444443 4677788765432     1111111 111  2223345555544  4569999999876544332 333578


Q ss_pred             EEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecC---CCcEEEeeCCCcc
Q 016224          233 YAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSM---DNSIRVWNLETLQ  304 (393)
Q Consensus       233 ~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~---dg~i~iwd~~~~~  304 (393)
                      ..++++++   ++++-...+.|.++++.....  .  ............++++  +..|+.+..   .+.|..+++.. +
T Consensus        82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--~--~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~  156 (267)
T 1npe_A           82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR--R--VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-T  156 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSC--E--EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-C
T ss_pred             cEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--E--EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-C
Confidence            89999874   445555678899998865321  1  1111111234566665  455555443   46888888753 3


Q ss_pred             eeeEec-cCccceEEEEEc--CCEEE-EEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCC
Q 016224          305 CIQTLT-EHTSVVMSLLCW--DQFLL-SCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDN  380 (393)
Q Consensus       305 ~~~~~~-~~~~~v~~l~~~--~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg  380 (393)
                      ....+. ........++++  ++.|+ +-...+.|.++|+..... ..+...  ......++.  +  ++.++++....+
T Consensus       157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~--~~~P~gi~~--d--~~~lyva~~~~~  229 (267)
T 1npe_A          157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR-RKVLEG--LQYPFAVTS--Y--GKNLYYTDWKTN  229 (267)
T ss_dssp             CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-EEEEEC--CCSEEEEEE--E--TTEEEEEETTTT
T ss_pred             CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce-EEEecC--CCCceEEEE--e--CCEEEEEECCCC
Confidence            333332 223345778886  45554 455568899999864322 222221  122344443  3  233455555678


Q ss_pred             eEEEEeCCceee
Q 016224          381 SVRFYDLPSVII  392 (393)
Q Consensus       381 ~I~iwd~~s~~l  392 (393)
                      .|.++|..++++
T Consensus       230 ~v~~~d~~~g~~  241 (267)
T 1npe_A          230 SVIAMDLAISKE  241 (267)
T ss_dssp             EEEEEETTTTEE
T ss_pred             eEEEEeCCCCCc
Confidence            999999987764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.15  E-value=0.0006  Score=65.44  Aligned_cols=223  Identities=15%  Similarity=0.096  Sum_probs=140.7

Q ss_pred             ecCCCeEEEEECCCCcEEEEEecC-CcCCEEEEEe-c-CCCCEEEEEe------------------CCCcEEEEECCCCe
Q 016224          125 GEKCKFLHSWTVGDGFKLLTQLEG-HQKVVSGITL-P-SGSDKLYSGS------------------KDETVRVWDCASGQ  183 (393)
Q Consensus       125 g~~dg~i~vwd~~~~~~~~~~l~~-h~~~I~~i~~-s-~~~~~l~s~s------------------~dg~v~iwd~~~~~  183 (393)
                      ...+..|.+.|+.+. +....+.- ....+..+++ + |++++++.++                  .++.|.+.|.++.+
T Consensus       108 d~~~~rVavIdl~t~-~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~  186 (595)
T 1fwx_A          108 DKANTRVARVRCDVM-KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWE  186 (595)
T ss_dssp             ETTTTEEEEEETTTT-EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTE
T ss_pred             cCCCCEEEEEECCCc-eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCe
Confidence            455678999999997 77774442 2356889998 5 9999999885                  24689999999999


Q ss_pred             EEEEEecCCce--EEEEeCCCEEEEEcCC---------------------------------------eEEEEECCC--C
Q 016224          184 CAGVINLGGEV--GCMISEGPWIFIGVTN---------------------------------------FVKAWNTQT--N  220 (393)
Q Consensus       184 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~---------------------------------------~i~v~d~~~--~  220 (393)
                      ...++......  ..+.++++++++...+                                       .|.+.|..+  +
T Consensus       187 v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~  266 (595)
T 1fwx_A          187 VAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS  266 (595)
T ss_dssp             EEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGC
T ss_pred             EEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCC
Confidence            99988764332  3344577777765321                                       366667666  3


Q ss_pred             ce-eeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCcc----c----cCceeecCceeeEEEEEEc--CCEE
Q 016224          221 TD-LSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNC----F----EPAASLKGHSLAVVSLVVG--ANKL  286 (393)
Q Consensus       221 ~~-~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~----~----~~~~~~~~~~~~v~~l~~~--~~~l  286 (393)
                      +. +..........++.++||   .++++..+.+|.++|+.+....    .    ....... -......++|+  +...
T Consensus       267 ~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY  345 (595)
T 1fwx_A          267 SLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAY  345 (595)
T ss_dssp             CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSEEE
T ss_pred             ceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCeEE
Confidence            33 222222335567888998   5566667899999999864210    0    0111111 12234556665  5334


Q ss_pred             EEecCCCcEEEeeCCC----------cceeeEeccCccceE-EE------EEcCCEEEEEeC---CCcE----------E
Q 016224          287 YSGSMDNSIRVWNLET----------LQCIQTLTEHTSVVM-SL------LCWDQFLLSCSL---DKTI----------K  336 (393)
Q Consensus       287 ~sg~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~-~l------~~~~~~l~s~s~---dg~i----------~  336 (393)
                      ++...|+.|.+||+.+          .+.+.++..|-.+-. ..      ..+|++|++...   |..+          .
T Consensus       346 ~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~q  425 (595)
T 1fwx_A          346 TSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQ  425 (595)
T ss_dssp             EEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEE
T ss_pred             EEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcce
Confidence            5677899999999977          566777776654321 11      123778887754   3321          8


Q ss_pred             EEEcCCCcceEEEE
Q 016224          337 VWFATDSGNLEVTY  350 (393)
Q Consensus       337 iwd~~~~~~~~~~~  350 (393)
                      ++|+. +.++..+.
T Consensus       426 l~dis-~~~m~lv~  438 (595)
T 1fwx_A          426 LIDIS-GDKMVLVH  438 (595)
T ss_dssp             EEECS-SSSCEEEE
T ss_pred             EEEcC-CCcEEEEE
Confidence            89984 44444433

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.13  E-value=0.0032  Score=58.34  Aligned_cols=180  Identities=12%  Similarity=0.074  Sum_probs=106.0

Q ss_pred             CCCCEEEE-EeCCCcEEEEECCCC----eEEEEEe-------cCC-ce--EEEEeCCCEEEEE-cC------CeEEEEEC
Q 016224          160 SGSDKLYS-GSKDETVRVWDCASG----QCAGVIN-------LGG-EV--GCMISEGPWIFIG-VT------NFVKAWNT  217 (393)
Q Consensus       160 ~~~~~l~s-~s~dg~v~iwd~~~~----~~~~~~~-------~~~-~~--~~~~~~~~~l~~~-~~------~~i~v~d~  217 (393)
                      ++.++|+. +-.++.|.|+|+.+.    +..+++.       ... ..  ..+.+++ ++++. .+      +.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            77777765 556789999999766    6777773       111 11  2233566 55543 33      58999999


Q ss_pred             CCCceeeecC-C---CCcEEEEEEeCC--EEEEEe-------------------CCCcEEEEEeccCCccccCceeecC-
Q 016224          218 QTNTDLSLSG-P---VGQVYAMAVGND--LLFAGT-------------------QDGAILAWKFNVTTNCFEPAASLKG-  271 (393)
Q Consensus       218 ~~~~~~~~~~-~---~~~v~~l~~~~~--~l~~~~-------------------~dg~I~vwd~~~~~~~~~~~~~~~~-  271 (393)
                      .+.+.+.... .   ...-+.+.|+|+  .+++..                   .+.+|.+||+.+.    +.+..+.. 
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~----k~~~tI~vg  247 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR----KRIHSLTLG  247 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT----EEEEEEESC
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC----cEeeEEecC
Confidence            9998873222 1   123445777887  666653                   3789999999875    33333332 


Q ss_pred             -ceeeEEEEEE--c--CCEEEEec------CCCcEEEeeCCCcce--eeEe--ccC----------------ccceEEEE
Q 016224          272 -HSLAVVSLVV--G--ANKLYSGS------MDNSIRVWNLETLQC--IQTL--TEH----------------TSVVMSLL  320 (393)
Q Consensus       272 -~~~~v~~l~~--~--~~~l~sg~------~dg~i~iwd~~~~~~--~~~~--~~~----------------~~~v~~l~  320 (393)
                       .......+.+  +  +++++++.      .+++|.+|....++.  ++.+  ...                ......|.
T Consensus       248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~  327 (462)
T 2ece_A          248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID  327 (462)
T ss_dssp             TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred             CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence             1122334433  4  55655554      567887766543321  1111  100                12345666


Q ss_pred             Ec--CCEEEEEeC-CCcEEEEEcCCCc
Q 016224          321 CW--DQFLLSCSL-DKTIKVWFATDSG  344 (393)
Q Consensus       321 ~~--~~~l~s~s~-dg~i~iwd~~~~~  344 (393)
                      ++  +++|.++.. .+.|.+||+....
T Consensus       328 lS~DGrfLYVSnrg~d~VavfdV~d~~  354 (462)
T 2ece_A          328 ISLDDKFLYLSLWGIGEVRQYDISNPF  354 (462)
T ss_dssp             ECTTSCEEEEEETTTTEEEEEECSSTT
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence            66  677766654 7899999986443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.11  E-value=0.0013  Score=66.28  Aligned_cols=243  Identities=10%  Similarity=-0.042  Sum_probs=125.3

Q ss_pred             CCcC-CEEEEEec-CCCCEEEEEeC-CC----cEEEEECCCC-eEEE-EEecCCceEEEEeCCCEEEEE-cC-----CeE
Q 016224          148 GHQK-VVSGITLP-SGSDKLYSGSK-DE----TVRVWDCASG-QCAG-VINLGGEVGCMISEGPWIFIG-VT-----NFV  212 (393)
Q Consensus       148 ~h~~-~I~~i~~s-~~~~~l~s~s~-dg----~v~iwd~~~~-~~~~-~~~~~~~~~~~~~~~~~l~~~-~~-----~~i  212 (393)
                      +|.- .+...+|| |||++||-+.. +|    +|+++|+.++ +.+. .+........+.++++.|+.. .+     ..|
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKV  249 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence            3443 68889999 99998875433 33    5999999998 6321 111111223455677766644 43     268


Q ss_pred             EEEECCCCce---eeec-CCCCcEEEEEEeCC--EEEEEe---CCCcEEEEEeccCCccccCceeecCceeeEEEEE-Ec
Q 016224          213 KAWNTQTNTD---LSLS-GPVGQVYAMAVGND--LLFAGT---QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLV-VG  282 (393)
Q Consensus       213 ~v~d~~~~~~---~~~~-~~~~~v~~l~~~~~--~l~~~~---~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~-~~  282 (393)
                      .++++.++..   +.+. ........+.++++  +|+...   ....|.++|+..+..................++. ..
T Consensus       250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~  329 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG  329 (751)
T ss_dssp             EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred             EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee
Confidence            8888877642   2222 23345678889998  444433   2345788888764211100111122233445555 33


Q ss_pred             CCEEEEec-CC----CcEEEeeCCCcceeeE-eccCcc--ceEEEEEcCCE-EEEEeCCCcE--EEEEcC------CCcc
Q 016224          283 ANKLYSGS-MD----NSIRVWNLETLQCIQT-LTEHTS--VVMSLLCWDQF-LLSCSLDKTI--KVWFAT------DSGN  345 (393)
Q Consensus       283 ~~~l~sg~-~d----g~i~iwd~~~~~~~~~-~~~~~~--~v~~l~~~~~~-l~s~s~dg~i--~iwd~~------~~~~  345 (393)
                      ++.|+..+ .+    ..|..+|+.+...... +..+..  .+..+.+.++. +++...++..  .++++.      .+..
T Consensus       330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~  409 (751)
T 2xe4_A          330 TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGT  409 (751)
T ss_dssp             TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEECCTTTSCCCTTT
T ss_pred             CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEecccccccccCCc
Confidence            66544433 32    3677778765322222 222332  45667777654 5566667764  455541      2222


Q ss_pred             -eEEEEeecCCccEEEEEeee--CCCCCcEEEEEeCC---CeEEEEeCCcee
Q 016224          346 -LEVTYTHNEEHGVLALCGMP--DSEGKPVLLCSCND---NSVRFYDLPSVI  391 (393)
Q Consensus       346 -~~~~~~~~~~~~v~~~~~~~--~~~~~~~l~s~s~d---g~I~iwd~~s~~  391 (393)
                       ...+. ......+..+.+.+  ...+..++++.+..   ..+..+|+.+++
T Consensus       410 ~~~~l~-l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          410 GLREVV-MEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             CCEECC-CCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             cceEEC-CCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence             33322 11222233443332  22333455555443   457777776653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.10  E-value=0.0021  Score=58.90  Aligned_cols=213  Identities=11%  Similarity=0.148  Sum_probs=134.7

Q ss_pred             CcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEE-eCCEEEEEeCCCc
Q 016224          172 ETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAV-GNDLLFAGTQDGA  250 (393)
Q Consensus       172 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~-~~~~l~~~~~dg~  250 (393)
                      ..|.|-|+..+..+...........+.+..++++.-....+.++|+++...+........|.-..| +++.|+..+ +..
T Consensus        48 ~~vvIiDl~~~~~~~rrpi~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT-~ta  126 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT-DNA  126 (494)
T ss_dssp             CEEEEEETTSTTSCEEEECCCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEEC-SSE
T ss_pred             CeEEEEECCCCCcceecccccceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEc-CCe
Confidence            367788888776666666666777777777877777778899999998887755554556666676 455555544 567


Q ss_pred             EEEEEeccCCccccCceeecCc----eeeEEEEEEcC--CEEE-Eec------CCCcEEEeeCCCcceeeEeccCccceE
Q 016224          251 ILAWKFNVTTNCFEPAASLKGH----SLAVVSLVVGA--NKLY-SGS------MDNSIRVWNLETLQCIQTLTEHTSVVM  317 (393)
Q Consensus       251 I~vwd~~~~~~~~~~~~~~~~~----~~~v~~l~~~~--~~l~-sg~------~dg~i~iwd~~~~~~~~~~~~~~~~v~  317 (393)
                      |+-|++....   .+.+.+..|    ...|.....+.  ++++ +|-      -.|.+.+|..+. +.-+.+++|.+...
T Consensus       127 VyHWsi~~~s---~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~  202 (494)
T 1bpo_A          127 VYHWSMEGES---QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFA  202 (494)
T ss_dssp             EEEEESSSSC---CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEE
T ss_pred             eEEecccCCC---CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeE
Confidence            9999987533   444444433    24455555553  3433 222      247889999874 44577888988877


Q ss_pred             EEEEcCC-----EEEEEeCC---CcEEEEEcCCC--c------ceEEEEeecC--CccEEEEEeeeCCCCCcEEEEEeCC
Q 016224          318 SLLCWDQ-----FLLSCSLD---KTIKVWFATDS--G------NLEVTYTHNE--EHGVLALCGMPDSEGKPVLLCSCND  379 (393)
Q Consensus       318 ~l~~~~~-----~l~s~s~d---g~i~iwd~~~~--~------~~~~~~~~~~--~~~v~~~~~~~~~~~~~~l~s~s~d  379 (393)
                      .+...++     .++-+...   ++++|-++...  .      +...+.....  ..--.++..++...   +++.-+.-
T Consensus       203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg---viyviTK~  279 (494)
T 1bpo_A          203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD---VVFLITKY  279 (494)
T ss_dssp             EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT---EEEEEETT
T ss_pred             EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC---EEEEEecC
Confidence            7777642     33434332   78999988543  1      1111111111  11233444444433   78888899


Q ss_pred             CeEEEEeCCceee
Q 016224          380 NSVRFYDLPSVII  392 (393)
Q Consensus       380 g~I~iwd~~s~~l  392 (393)
                      |.|++||++|+.+
T Consensus       280 G~i~lyDleTgt~  292 (494)
T 1bpo_A          280 GYIHLYDLETGTC  292 (494)
T ss_dssp             SEEEEEETTTCCE
T ss_pred             ceEEEEeccccee
Confidence            9999999999865

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.08  E-value=0.0013  Score=58.85  Aligned_cols=228  Identities=12%  Similarity=0.085  Sum_probs=124.6

Q ss_pred             CCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC--------------------CceEEE--Ee-CCCEEEEE
Q 016224          151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG--------------------GEVGCM--IS-EGPWIFIG  207 (393)
Q Consensus       151 ~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~--------------------~~~~~~--~~-~~~~l~~~  207 (393)
                      ....++++++++++++++..++.|..|+..+++........                    ..+..+  .+ ++.++++.
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            34566889999988888888999999998776543221100                    122222  23 45555555


Q ss_pred             cCCeEEEEECCCCceeeecC-----CCCcEEEEEEeC-C-EEEEEeC------------------CCcEEEEEeccCCcc
Q 016224          208 VTNFVKAWNTQTNTDLSLSG-----PVGQVYAMAVGN-D-LLFAGTQ------------------DGAILAWKFNVTTNC  262 (393)
Q Consensus       208 ~~~~i~v~d~~~~~~~~~~~-----~~~~v~~l~~~~-~-~l~~~~~------------------dg~I~vwd~~~~~~~  262 (393)
                      ..+.|..+|..++....+..     .......+++.+ + .|+++..                  ++.|..+|...+.. 
T Consensus        99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~-  177 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET-  177 (322)
T ss_dssp             TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE-
T ss_pred             CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE-
Confidence            66668888887664332211     123567889988 6 3443332                  36677777654321 


Q ss_pred             ccCceeecCceeeEEEEEEc--CCEEEEe-cCCCcEEEeeCCCcc--eeeEeccCccceEEEEEc--CCEEEEEeC----
Q 016224          263 FEPAASLKGHSLAVVSLVVG--ANKLYSG-SMDNSIRVWNLETLQ--CIQTLTEHTSVVMSLLCW--DQFLLSCSL----  331 (393)
Q Consensus       263 ~~~~~~~~~~~~~v~~l~~~--~~~l~sg-~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~--~~~l~s~s~----  331 (393)
                       .   .+.........++++  ++.|+.+ ...+.|.+|++....  ....+..... ...++++  +++.++...    
T Consensus       178 -~---~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~  252 (322)
T 2fp8_A          178 -T---LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDG  252 (322)
T ss_dssp             -E---EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred             -E---EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccc
Confidence             1   111011112345554  5555544 567899999987421  1112211122 5567776  555555433    


Q ss_pred             ------CCcEEEEEcCCCcceEEEEeecC--CccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          332 ------DKTIKVWFATDSGNLEVTYTHNE--EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       332 ------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                            .+.|..+|.. ++.+..+.....  ...+..+++ .   ++.++++....+.|..+++..
T Consensus       253 ~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~---~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          253 NMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-H---DGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             STTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-E---TTEEEEECSSCSEEEEEEC--
T ss_pred             cccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-e---CCEEEEeecCCCceEEEeccc
Confidence                  4668888763 444444443221  122444443 2   333666666788999998864

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.04  E-value=0.0077  Score=55.39  Aligned_cols=233  Identities=9%  Similarity=0.017  Sum_probs=134.7

Q ss_pred             eEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEE-eCCCcEEEEECCCCeEEEEEec
Q 016224          112 ILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG-SKDETVRVWDCASGQCAGVINL  190 (393)
Q Consensus       112 i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~  190 (393)
                      ..|....+...++-+....|+..++... .....+. ....+..++|++.+..|+.+ ...+.|..+++........+..
T Consensus        79 ~~C~~~~~~~~l~~~~~~~I~~i~~~~~-~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  156 (386)
T 3v65_B           79 RSCKALGPEPVLLFANRIDIRQVLPHRS-EYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST  156 (386)
T ss_dssp             SCEEECSSCCEEEEECBSCEEEECTTSC-CCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred             CeECCccccceeEeecCccceeeccCCC-cEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence            3455554455555555677888888765 3333333 34567899999766655544 4568899999887654444332


Q ss_pred             C--Cce-EEEEeCCCEE-EEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EE-EEEeCC-CcEEEEEeccCC
Q 016224          191 G--GEV-GCMISEGPWI-FIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LL-FAGTQD-GAILAWKFNVTT  260 (393)
Q Consensus       191 ~--~~~-~~~~~~~~~l-~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l-~~~~~d-g~I~vwd~~~~~  260 (393)
                      .  .+. ..+...+..| ++. ..+.|.+.++...... ...........++++|.  .| ++-... +.|..+++....
T Consensus       157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~  236 (386)
T 3v65_B          157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG  236 (386)
T ss_dssp             SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred             CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence            2  222 2333334444 444 4568888888765443 33344467889999975  44 443344 678888776532


Q ss_pred             ccccCceeecCceeeEEEEEEc--CCE-EEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCC-EEEEEeCCCcEE
Q 016224          261 NCFEPAASLKGHSLAVVSLVVG--ANK-LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ-FLLSCSLDKTIK  336 (393)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~l~~~--~~~-l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~s~s~dg~i~  336 (393)
                      .    .......-.....|+++  ++. .++-+..+.|..+|+........+.........+++.+. ++++-...+.|.
T Consensus       237 ~----~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~  312 (386)
T 3v65_B          237 R----RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSIN  312 (386)
T ss_dssp             C----EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEE
T ss_pred             c----EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEE
Confidence            1    11111122234556664  444 445556778999998754333333333334456666644 455555678899


Q ss_pred             EEEcCCCcceEEEE
Q 016224          337 VWFATDSGNLEVTY  350 (393)
Q Consensus       337 iwd~~~~~~~~~~~  350 (393)
                      .++..+++....+.
T Consensus       313 ~~~~~~G~~~~~i~  326 (386)
T 3v65_B          313 SANKFTGKNQEIIR  326 (386)
T ss_dssp             EEETTTCCSCEEEE
T ss_pred             EEECCCCcceEEEc
Confidence            99866666655554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.00  E-value=0.0005  Score=68.19  Aligned_cols=213  Identities=14%  Similarity=0.140  Sum_probs=115.0

Q ss_pred             eEEEEECCCC-cEEEEEec-CCcCCEEEEEecCCCCEEEEEeC-CCcEEEEECCCCeEEEEEecCC----ceEEEEeCCC
Q 016224          130 FLHSWTVGDG-FKLLTQLE-GHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCASGQCAGVINLGG----EVGCMISEGP  202 (393)
Q Consensus       130 ~i~vwd~~~~-~~~~~~l~-~h~~~I~~i~~s~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~----~~~~~~~~~~  202 (393)
                      .+.+||..++ +..+..+. .+.....++++..++++++.|+. +..+.+||..+.+-...-..+.    ......++++
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~  299 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR  299 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCe
Confidence            5888998765 22233332 23333345677889999999984 4689999998876443322221    1223334888


Q ss_pred             EEEEEc--C-----CeEEEEECCCCceeeecCC-----CCc-EEEEE-EeCCEEEEEeCCC---------cEEEEEeccC
Q 016224          203 WIFIGV--T-----NFVKAWNTQTNTDLSLSGP-----VGQ-VYAMA-VGNDLLFAGTQDG---------AILAWKFNVT  259 (393)
Q Consensus       203 ~l~~~~--~-----~~i~v~d~~~~~~~~~~~~-----~~~-v~~l~-~~~~~l~~~~~dg---------~I~vwd~~~~  259 (393)
                      +++.|.  +     ..+.+||..+++-..+...     ... -.++. .....++.++.+|         .+..||....
T Consensus       300 iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~  379 (656)
T 1k3i_A          300 VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS  379 (656)
T ss_dssp             EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTT
T ss_pred             EEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCc
Confidence            888764  2     4799999988765443110     000 00011 1122445554444         4567777654


Q ss_pred             CccccCceeecC------ceeeEEEEE---EcCCEEEEecCCC-----------cEEEeeCCCcceeeEe--ccCcc--c
Q 016224          260 TNCFEPAASLKG------HSLAVVSLV---VGANKLYSGSMDN-----------SIRVWNLETLQCIQTL--TEHTS--V  315 (393)
Q Consensus       260 ~~~~~~~~~~~~------~~~~v~~l~---~~~~~l~sg~~dg-----------~i~iwd~~~~~~~~~~--~~~~~--~  315 (393)
                      .-. ........      ....-.++.   .++.+++.|+.++           .|.+||..+.+-....  ..+..  .
T Consensus       380 ~w~-~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~  458 (656)
T 1k3i_A          380 GDV-KSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTF  458 (656)
T ss_dssp             CEE-EEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBS
T ss_pred             cee-ecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCccc
Confidence            211 11110000      000112332   2466777777532           6888998876543332  11222  2


Q ss_pred             eEEEEE-cCCEEEEEeCC-----------CcEEEEEcCCC
Q 016224          316 VMSLLC-WDQFLLSCSLD-----------KTIKVWFATDS  343 (393)
Q Consensus       316 v~~l~~-~~~~l~s~s~d-----------g~i~iwd~~~~  343 (393)
                      ..++.. .+++++.|+.+           ..+.+||..+.
T Consensus       459 ~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~  498 (656)
T 1k3i_A          459 HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD  498 (656)
T ss_dssp             CEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred             CCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence            233444 57888888764           46899998654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.87  E-value=0.014  Score=52.78  Aligned_cols=233  Identities=9%  Similarity=0.026  Sum_probs=133.7

Q ss_pred             eEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe-CCCcEEEEECCCCeEEEEEec
Q 016224          112 ILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVWDCASGQCAGVINL  190 (393)
Q Consensus       112 i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~  190 (393)
                      .+|....++..+.-+....|+..++... .....+. ....+..++|++....|+-+. ..+.|..+++........+..
T Consensus        36 ~~C~~~~~~~~ll~~~~~~I~~i~~~g~-~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  113 (349)
T 3v64_C           36 RSCKALGPEPVLLFANRIDIRQVLPHRS-EYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST  113 (349)
T ss_dssp             SCEEESSSCCEEEEECBSCEEEECTTSC-CEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred             CcccccccCceeEeecccceEEEeCCCC-eeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence            3555554444444445566888887665 4433343 334578999997666665554 568899999887654443332


Q ss_pred             C--Cce-EEEEeCCCEE-EEE-cCCeEEEEECCCCceee-ecCCCCcEEEEEEeCC---EEEEEeCC-CcEEEEEeccCC
Q 016224          191 G--GEV-GCMISEGPWI-FIG-VTNFVKAWNTQTNTDLS-LSGPVGQVYAMAVGND---LLFAGTQD-GAILAWKFNVTT  260 (393)
Q Consensus       191 ~--~~~-~~~~~~~~~l-~~~-~~~~i~v~d~~~~~~~~-~~~~~~~v~~l~~~~~---~l~~~~~d-g~I~vwd~~~~~  260 (393)
                      .  .+. ..+...+..| ++. ..+.|.+.++....... ..........++++|.   ++++-... +.|..+++....
T Consensus       114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~  193 (349)
T 3v64_C          114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG  193 (349)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred             CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC
Confidence            2  222 2233334444 444 45689999987655443 3344567789999974   44444444 778888876532


Q ss_pred             ccccCceeecCceeeEEEEEEc--CCEEE-EecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCCE-EEEEeCCCcEE
Q 016224          261 NCFEPAASLKGHSLAVVSLVVG--ANKLY-SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQF-LLSCSLDKTIK  336 (393)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~l~~~--~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~-l~s~s~dg~i~  336 (393)
                      .  .  ......-.....|+++  ++.|+ +-...+.|..+|+........+.........+++.+.. +++-...+.|.
T Consensus       194 ~--~--~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~  269 (349)
T 3v64_C          194 R--R--IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSIN  269 (349)
T ss_dssp             C--E--ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEE
T ss_pred             c--E--EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEE
Confidence            1  1  1111112234566665  45544 44556789999987533322233233344566666544 45555677888


Q ss_pred             EEEcCCCcceEEEE
Q 016224          337 VWFATDSGNLEVTY  350 (393)
Q Consensus       337 iwd~~~~~~~~~~~  350 (393)
                      .++..+++....+.
T Consensus       270 ~~~~~~G~~~~~i~  283 (349)
T 3v64_C          270 SANKFTGKNQEIIR  283 (349)
T ss_dssp             EEETTTCCSCEEEE
T ss_pred             EEEccCCCccEEec
Confidence            88865665555443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.86  E-value=0.00034  Score=69.36  Aligned_cols=229  Identities=10%  Similarity=0.019  Sum_probs=119.7

Q ss_pred             EEEecC-CCCEEEEEeCCC-----------cEEEEECCCCeEEE--EEecCC--c--eEEEEeCCCEEEEEc--CCeEEE
Q 016224          155 GITLPS-GSDKLYSGSKDE-----------TVRVWDCASGQCAG--VINLGG--E--VGCMISEGPWIFIGV--TNFVKA  214 (393)
Q Consensus       155 ~i~~s~-~~~~l~s~s~dg-----------~v~iwd~~~~~~~~--~~~~~~--~--~~~~~~~~~~l~~~~--~~~i~v  214 (393)
                      .+++.+ ++++++.|+.+.           .+.+||..+++-..  .+....  .  ..++..++++++.|.  +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            456666 888888887643           58899998875332  222211  1  133446788888873  458999


Q ss_pred             EECCCCceeeecC---CCCcEEEEEE-eCCEEEEEe-CC-----CcEEEEEeccCCccccCc-----eeecCceeeEEEE
Q 016224          215 WNTQTNTDLSLSG---PVGQVYAMAV-GNDLLFAGT-QD-----GAILAWKFNVTTNCFEPA-----ASLKGHSLAVVSL  279 (393)
Q Consensus       215 ~d~~~~~~~~~~~---~~~~v~~l~~-~~~~l~~~~-~d-----g~I~vwd~~~~~~~~~~~-----~~~~~~~~~v~~l  279 (393)
                      ||..+++-..+..   .........+ ...+++.|+ .+     ..+.+||..+..-  +.+     ..+...... ..+
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W--~~~~~~~~~p~~~~~~~-~~~  346 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW--TSLPNAKVNPMLTADKQ-GLY  346 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE--EEETTSCSGGGCCCCTT-GGG
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc--eeCCCcccccccccccc-cee
Confidence            9998876543321   2222233333 333777777 34     5688999876431  111     000000000 000


Q ss_pred             EEcCCEEEEecC---------CCcEEEeeCCCcceeeEeccCcc---------ceEEEEE---cCCEEEEEeCCC-----
Q 016224          280 VVGANKLYSGSM---------DNSIRVWNLETLQCIQTLTEHTS---------VVMSLLC---WDQFLLSCSLDK-----  333 (393)
Q Consensus       280 ~~~~~~l~sg~~---------dg~i~iwd~~~~~~~~~~~~~~~---------~v~~l~~---~~~~l~s~s~dg-----  333 (393)
                      ..++..++.|+.         ...+..||..+.........+..         .-.++.+   .+++++.|+.++     
T Consensus       347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~  426 (656)
T 1k3i_A          347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD  426 (656)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred             ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCC
Confidence            112233333333         34678888887654433322221         2234443   366777777543     


Q ss_pred             ------cEEEEEcCCCcceEEEE--eecCCccEEEEEeeeCCCCCcEEEEEeCC-----------CeEEEEeCCce
Q 016224          334 ------TIKVWFATDSGNLEVTY--THNEEHGVLALCGMPDSEGKPVLLCSCND-----------NSVRFYDLPSV  390 (393)
Q Consensus       334 ------~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~l~s~s~d-----------g~I~iwd~~s~  390 (393)
                            .|.+||..+..- ....  .......-...+..+++   ++++.|+.+           ..+.+||..+.
T Consensus       427 ~~~~~~~v~~yd~~~~~W-~~~~~~~mp~~R~~~~~~~l~~g---~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~  498 (656)
T 1k3i_A          427 ATTNAHIITLGEPGTSPN-TVFASNGLYFARTFHTSVVLPDG---STFITGGQRRGIPFEDSTPVFTPEIYVPEQD  498 (656)
T ss_dssp             CCCCEEEEECCSTTSCCE-EEECTTCCSSCCBSCEEEECTTS---CEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred             cCCcceEEEcCCCCCCCe-eEEccCCCCCCcccCCeEECCCC---CEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence                  577888765432 2221  11111111223333433   488888754           46899998664

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.73  E-value=0.027  Score=51.72  Aligned_cols=248  Identities=8%  Similarity=0.094  Sum_probs=157.7

Q ss_pred             cCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEE-eCCCEE
Q 016224          126 EKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI-SEGPWI  204 (393)
Q Consensus       126 ~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~l  204 (393)
                      +....|.|.|+.++.+..+.-..-.+.|    .+|..+.||-=. ..++.|+|+++.+.+..+...+.+..+- -+...|
T Consensus        45 ~~~~~vvIiDl~~~~~~~rrpi~AdsAI----MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l  119 (494)
T 1bpo_A           45 GEQAQVVIIDMNDPSNPIRRPISADSAI----MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV  119 (494)
T ss_dssp             TTCCEEEEEETTSTTSCEEEECCCSEEE----ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCcceecccccceee----eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeE
Confidence            3444889999987645544433333333    578777777655 6799999999999999999988877664 467777


Q ss_pred             EEEcCCeEEEEECCCCce-e-eecCC----CCcEEEEEEeCC---EEEEEe------CCCcEEEEEeccCCccccCceee
Q 016224          205 FIGVTNFVKAWNTQTNTD-L-SLSGP----VGQVYAMAVGND---LLFAGT------QDGAILAWKFNVTTNCFEPAASL  269 (393)
Q Consensus       205 ~~~~~~~i~v~d~~~~~~-~-~~~~~----~~~v~~l~~~~~---~l~~~~------~dg~I~vwd~~~~~~~~~~~~~~  269 (393)
                      ..-.+..|+.|++..... . .+..|    ..+|.....+++   .+++|-      -.|.+.+|..+..     ..+.+
T Consensus       120 ~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-----~sQ~i  194 (494)
T 1bpo_A          120 ALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPI  194 (494)
T ss_dssp             EEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-----CEEEE
T ss_pred             EEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-----ccchh
Confidence            778899999999975322 1 22222    356777777777   333332      2467788887763     45678


Q ss_pred             cCceeeEEEEEEcCC-----EEEEecC---CCcEEEeeCCCc---ce------eeEec---cCccceEEEEEcC--CEEE
Q 016224          270 KGHSLAVVSLVVGAN-----KLYSGSM---DNSIRVWNLETL---QC------IQTLT---EHTSVVMSLLCWD--QFLL  327 (393)
Q Consensus       270 ~~~~~~v~~l~~~~~-----~l~sg~~---dg~i~iwd~~~~---~~------~~~~~---~~~~~v~~l~~~~--~~l~  327 (393)
                      .+|...-..+..+++     .|..+..   .+.++|.++...   ..      +..+-   ...+--.++..+.  ..+.
T Consensus       195 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviy  274 (494)
T 1bpo_A          195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF  274 (494)
T ss_dssp             CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEE
T ss_pred             eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEE
Confidence            889888777777654     3333332   378999988532   11      11111   1122335666663  4677


Q ss_pred             EEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          328 SCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       328 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      .-..-|.|.+||+.++..+..-.-...  .+..-+......   =++.-...|.|.--.+.
T Consensus       275 viTK~G~i~lyDleTgt~i~~nrIs~~--~iF~t~~~~~~~---Gi~~Vnr~GqVl~v~v~  330 (494)
T 1bpo_A          275 LITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATA---GIIGVNRKGQVLSVCVE  330 (494)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTT---EEEEEETTCEEEEEEEC
T ss_pred             EEecCceEEEEecccceeeeeecccCC--ceEEecccCCCC---cEEEEccCceEEEEEEc
Confidence            888999999999999887665543333  344333332222   24555577777655544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.66  E-value=0.025  Score=59.43  Aligned_cols=256  Identities=15%  Similarity=0.093  Sum_probs=143.9

Q ss_pred             cCcEEEecCCCeEEEEECCCCc-EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEE----------EE
Q 016224          119 QGNCMYGEKCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA----------GV  187 (393)
Q Consensus       119 ~~~~~~g~~dg~i~vwd~~~~~-~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~----------~~  187 (393)
                      +++++..+ ++.++|..+++-. -.++++. -...+..++++|+.+.++.+..+.  ..++.......          ..
T Consensus       706 ~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  781 (1158)
T 3ei3_A          706 PDSLALAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRI--EVQDTSGGTTALRPSASTQALSS  781 (1158)
T ss_dssp             TTEEEEEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEE--EEECSSSSEEESSCCHHHHCSEE
T ss_pred             CCcEEEEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEec--cccccccccchhhhhhhhhhhhh
Confidence            34455444 5568888775321 2333443 246788999999888776655432  22222110000          00


Q ss_pred             EecCCc-eEEE--E---eCCCEEEEEcCCeEEEEECCCCceee--ecCCCCcEEEEE---EeC---CEEEEEe-------
Q 016224          188 INLGGE-VGCM--I---SEGPWIFIGVTNFVKAWNTQTNTDLS--LSGPVGQVYAMA---VGN---DLLFAGT-------  246 (393)
Q Consensus       188 ~~~~~~-~~~~--~---~~~~~l~~~~~~~i~v~d~~~~~~~~--~~~~~~~v~~l~---~~~---~~l~~~~-------  246 (393)
                      ...... ....  .   .-+.-   -....|++.|..+.+.+.  .......+.+++   |..   .+|++|+       
T Consensus       782 ~~~~~~~~~~~~~~~~~~~g~~---~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e  858 (1158)
T 3ei3_A          782 SVSSSKLFSSSTAPHETSFGEE---VEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE  858 (1158)
T ss_dssp             EECCCCCC----------CCCE---EEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTC
T ss_pred             cccccccccccccCchhhcCCc---eeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCC
Confidence            000000 0000  0   00000   013467788877766551  122334445544   332   2888887       


Q ss_pred             ---CCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceee-EeccCcc-ceEEEEE
Q 016224          247 ---QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQ-TLTEHTS-VVMSLLC  321 (393)
Q Consensus       247 ---~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~~~-~v~~l~~  321 (393)
                         ..|.|++|++....  .+.+... ...+.+++++.-+.+|++|- ..+|++|++...+.+. ....... .+..+..
T Consensus       859 ~~~~~Gri~vf~v~~~k--L~lv~~~-~v~g~v~al~~~~g~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~  934 (1158)
T 3ei3_A          859 AEPKQGRIVVFQYSDGK--LQTVAEK-EVKGAVYSMVEFNGKLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKT  934 (1158)
T ss_dssp             SSCCCEEEEEEEEETTE--EEEEEEE-EESSCEEEEEEETTEEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEE
T ss_pred             CCCCceEEEEEEEECCE--EEEEEEE-EcCCcCEEEeeeCCEEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEec
Confidence               35889999997331  2333322 23567888876555665554 4789999998655433 1111111 1345666


Q ss_pred             cCCEEEEEeCCCcEEEEEcCC-CcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          322 WDQFLLSCSLDKTIKVWFATD-SGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       322 ~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      .+++++.|..-..|.++..+. ...+..+........++++.+..+.    .++.+..+|.|.+...+.
T Consensus       935 ~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~----t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          935 KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD----NFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             ETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT----EEEEEETTSEEEEEEECT
T ss_pred             cCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC----cEEEEcCCCcEEEEecCC
Confidence            689999999888888766543 3455666666667778888888653    688899999999987654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.59  E-value=0.013  Score=51.52  Aligned_cols=221  Identities=16%  Similarity=0.203  Sum_probs=112.0

Q ss_pred             CEEEEEeCC----CcEEEEECCCCeEEEEEecCCc---eEEEEeCCCEEEEE-cC-----CeEEEEECCCCceeeecC--
Q 016224          163 DKLYSGSKD----ETVRVWDCASGQCAGVINLGGE---VGCMISEGPWIFIG-VT-----NFVKAWNTQTNTDLSLSG--  227 (393)
Q Consensus       163 ~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~-~~-----~~i~v~d~~~~~~~~~~~--  227 (393)
                      .+++.|+.+    ..+.+||+.+.+-...-..+..   ......++.+++.| .+     +.+.+||..+.+-..+..  
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p   96 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMR   96 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCC
Confidence            344445432    3678889887754333222211   12233456666554 22     368899998887553322  


Q ss_pred             -CCCcEEEEEEeCCEEEEEeCCC-----cEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCC-------Cc
Q 016224          228 -PVGQVYAMAVGNDLLFAGTQDG-----AILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD-------NS  294 (393)
Q Consensus       228 -~~~~v~~l~~~~~~l~~~~~dg-----~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d-------g~  294 (393)
                       .......+.+...+++.|+.++     .+.+||+.+..  +..+..+........+...++.+++.|+.+       ..
T Consensus        97 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  174 (302)
T 2xn4_A           97 DRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNE--WFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLST  174 (302)
T ss_dssp             SCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCC
T ss_pred             ccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCe--EeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccE
Confidence             1222233334444666676553     46677766542  222222222122223334566666666642       45


Q ss_pred             EEEeeCCCccee--eEeccCccceEEEEEcCCEEEEEeCC-----CcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCC
Q 016224          295 IRVWNLETLQCI--QTLTEHTSVVMSLLCWDQFLLSCSLD-----KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDS  367 (393)
Q Consensus       295 i~iwd~~~~~~~--~~~~~~~~~v~~l~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  367 (393)
                      +.+||+.+.+-.  ..+.........+.+.+.+++.|+.+     ..+.+||+.+.. ...+........-..++..   
T Consensus       175 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~r~~~~~~~~---  250 (302)
T 2xn4_A          175 VECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNA-WRQVADMNMCRRNAGVCAV---  250 (302)
T ss_dssp             EEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE---
T ss_pred             EEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCC-EeeCCCCCCccccCeEEEE---
Confidence            889999875432  22222222234445557777777764     368899986543 3333222111111111111   


Q ss_pred             CCCcEEEEEeCCC-----eEEEEeCCce
Q 016224          368 EGKPVLLCSCNDN-----SVRFYDLPSV  390 (393)
Q Consensus       368 ~~~~~l~s~s~dg-----~I~iwd~~s~  390 (393)
                       ++.+++.|+.++     .|.+||+.+.
T Consensus       251 -~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          251 -NGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             -TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             -CCEEEEECCcCCCcccccEEEEcCCCC
Confidence             334777777553     4889998764

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.58  E-value=0.034  Score=49.03  Aligned_cols=215  Identities=9%  Similarity=-0.013  Sum_probs=117.6

Q ss_pred             eEEeeEecC-cEEEec-CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC-C-cEEEEECCCCeEEEE
Q 016224          112 ILCRNWVQG-NCMYGE-KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD-E-TVRVWDCASGQCAGV  187 (393)
Q Consensus       112 i~c~~~~~~-~~~~g~-~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d-g-~v~iwd~~~~~~~~~  187 (393)
                      ...++|.++ .++.+. ..+.|..||....  ....+. -......|++.++++++++.... + .|..+|..+++....
T Consensus        34 pegia~~~~g~lyv~d~~~~~I~~~d~~g~--~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~  110 (306)
T 2p4o_A           34 LENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  110 (306)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             cceEEECCCCCEEEEeCCCCeEEEECCCCc--eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence            456677655 444444 6789999997765  222222 23468899999999866655432 2 477778778876544


Q ss_pred             EecCC--ceEE-EEeCCC-EEEEE-cCCeEEEEECCCCc--eeee---------cCCCCcEEEEEEeCC-EEEEEeCCCc
Q 016224          188 INLGG--EVGC-MISEGP-WIFIG-VTNFVKAWNTQTNT--DLSL---------SGPVGQVYAMAVGND-LLFAGTQDGA  250 (393)
Q Consensus       188 ~~~~~--~~~~-~~~~~~-~l~~~-~~~~i~v~d~~~~~--~~~~---------~~~~~~v~~l~~~~~-~l~~~~~dg~  250 (393)
                      .....  .... ....+. .+++. ..+.|.++|...+.  ....         .........+..+.. ++++-...+.
T Consensus       111 ~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~  190 (306)
T 2p4o_A          111 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKML  190 (306)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTE
T ss_pred             EeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCE
Confidence            43321  1111 112333 34444 46789999987642  2111         111224555644444 5555566789


Q ss_pred             EEEEEeccCCccccCceeec-CceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceee--EeccCccceEEEEEcC----
Q 016224          251 ILAWKFNVTTNCFEPAASLK-GHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQ--TLTEHTSVVMSLLCWD----  323 (393)
Q Consensus       251 I~vwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~l~~~~----  323 (393)
                      |..+++..... ......+. .....-.++..+++++++....+.|.++|.. ++...  .+.......+++++.+    
T Consensus       191 I~~~~~~~~g~-~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d  268 (306)
T 2p4o_A          191 LLRIPVDSTDK-PGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGD  268 (306)
T ss_dssp             EEEEEBCTTSC-BCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTT
T ss_pred             EEEEEeCCCCC-CCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCC
Confidence            99999875211 11111111 0011112333356676666678899999975 55532  3333334578888852    


Q ss_pred             -CEEEEEeC
Q 016224          324 -QFLLSCSL  331 (393)
Q Consensus       324 -~~l~s~s~  331 (393)
                       +.|+..+.
T Consensus       269 ~~~LyVt~~  277 (306)
T 2p4o_A          269 CTAIYVVTN  277 (306)
T ss_dssp             TTEEEEEEC
T ss_pred             CCEEEEECC
Confidence             45554443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.54  E-value=0.039  Score=48.66  Aligned_cols=219  Identities=11%  Similarity=0.016  Sum_probs=121.4

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEE--eCCCEEEEEcC--C-eEEEE
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI--SEGPWIFIGVT--N-FVKAW  215 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~--~-~i~v~  215 (393)
                      +.+..+... .....++|+++++++++-..++.|..||... +....+........+.  ++++++++...  + .|..+
T Consensus        23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~  100 (306)
T 2p4o_A           23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSL  100 (306)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEE
Confidence            556666543 5677899999998777766789999999875 4444455444444443  46777666532  2 47777


Q ss_pred             ECCCCceeeec--CCCCcEEEEEEeCC-EE-EEEeCCCcEEEEEeccCCcccc---C-ce--eecCceeeEEEEEEcCCE
Q 016224          216 NTQTNTDLSLS--GPVGQVYAMAVGND-LL-FAGTQDGAILAWKFNVTTNCFE---P-AA--SLKGHSLAVVSLVVGANK  285 (393)
Q Consensus       216 d~~~~~~~~~~--~~~~~v~~l~~~~~-~l-~~~~~dg~I~vwd~~~~~~~~~---~-~~--~~~~~~~~v~~l~~~~~~  285 (393)
                      +..+++...+.  ........++..++ .+ ++-..++.|+++|.........   . ..  .....-.....++.+++.
T Consensus       101 d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~  180 (306)
T 2p4o_A          101 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNF  180 (306)
T ss_dssp             ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTE
T ss_pred             cCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCE
Confidence            87777654322  12223344444443 44 4444588888888754210000   0 00  000111123344677765


Q ss_pred             E-EEecCCCcEEEeeCCC-cce--eeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeec-CCccE
Q 016224          286 L-YSGSMDNSIRVWNLET-LQC--IQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHN-EEHGV  358 (393)
Q Consensus       286 l-~sg~~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v  358 (393)
                      | ++-...+.|..||+.. ++.  ...+... .....++++  ++++++....+.|.++|.. ++ +..+.... .....
T Consensus       181 lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~-~~~~~~~~~~~~~p  257 (306)
T 2p4o_A          181 LYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RS-TTIIAQAEQGVIGS  257 (306)
T ss_dssp             EEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CC-EEEEECGGGTCTTE
T ss_pred             EEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CC-EEEEeecccccCCc
Confidence            4 4555678999999874 322  1111111 122345555  6666666667899999874 33 22222222 22457


Q ss_pred             EEEEee
Q 016224          359 LALCGM  364 (393)
Q Consensus       359 ~~~~~~  364 (393)
                      .+++|.
T Consensus       258 ~~~a~~  263 (306)
T 2p4o_A          258 TAVAFG  263 (306)
T ss_dssp             EEEEEC
T ss_pred             eEEEEe
Confidence            788886

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.51  E-value=0.012  Score=51.68  Aligned_cols=211  Identities=10%  Similarity=0.137  Sum_probs=110.0

Q ss_pred             CeEEEEECCCC-cEEEEEecCCcCCEEEEEecCCCCEEEEEeCC-----CcEEEEECCCCe---EEEEEecCC---ceEE
Q 016224          129 KFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD-----ETVRVWDCASGQ---CAGVINLGG---EVGC  196 (393)
Q Consensus       129 g~i~vwd~~~~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d-----g~v~iwd~~~~~---~~~~~~~~~---~~~~  196 (393)
                      ..+.+||..+. ++.+..+......-..+.  .++.+++.|+.+     ..+.+||..+.+   -...-..+.   ....
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~  108 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA  108 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence            36788888765 112222221111112222  246677777754     468999988766   333222221   1233


Q ss_pred             EEeCCCEEEEE-c-----CCeEEEEECCCCceeeec---CCCCcEEEEEEeCCEEEEEeCC-----CcEEEEEeccCCcc
Q 016224          197 MISEGPWIFIG-V-----TNFVKAWNTQTNTDLSLS---GPVGQVYAMAVGNDLLFAGTQD-----GAILAWKFNVTTNC  262 (393)
Q Consensus       197 ~~~~~~~l~~~-~-----~~~i~v~d~~~~~~~~~~---~~~~~v~~l~~~~~~l~~~~~d-----g~I~vwd~~~~~~~  262 (393)
                      ...++.+++.| .     .+.+.+||+.+.+-..+.   ........+.+...+++.|+.+     ..+.+||+.+..  
T Consensus       109 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--  186 (301)
T 2vpj_A          109 TTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGH--  186 (301)
T ss_dssp             EEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE--
T ss_pred             EEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCc--
Confidence            33466666665 2     247899999887754322   1122222333333366666654     457888876643  


Q ss_pred             ccCceeecCceeeEEEEEEcCCEEEEecCC-----CcEEEeeCCCcceee--EeccCccceEEEEEcCCEEEEEeCC---
Q 016224          263 FEPAASLKGHSLAVVSLVVGANKLYSGSMD-----NSIRVWNLETLQCIQ--TLTEHTSVVMSLLCWDQFLLSCSLD---  332 (393)
Q Consensus       263 ~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~l~~~~~~l~s~s~d---  332 (393)
                      +..+..+.........+..++.+++.|+.+     ..+.+||+.+.+-..  .+.........+...+++++.|+.+   
T Consensus       187 W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~  266 (301)
T 2vpj_A          187 WTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNS  266 (301)
T ss_dssp             EEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSS
T ss_pred             EEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCc
Confidence            222222221122223344566677777754     468999998754322  2222222234444557777777765   


Q ss_pred             --CcEEEEEcCCC
Q 016224          333 --KTIKVWFATDS  343 (393)
Q Consensus       333 --g~i~iwd~~~~  343 (393)
                        ..|.+||+.+.
T Consensus       267 ~~~~v~~yd~~~~  279 (301)
T 2vpj_A          267 LLSSIECYDPIID  279 (301)
T ss_dssp             BEEEEEEEETTTT
T ss_pred             ccccEEEEcCCCC
Confidence              35778887654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.50  E-value=0.02  Score=50.36  Aligned_cols=210  Identities=14%  Similarity=0.149  Sum_probs=108.5

Q ss_pred             CeEEEEECCCCcEEEE--EecCCcCCEEEEEecCCCCEEEEEeCC-----CcEEEEECCCCeEEEEEecCC---ceEEEE
Q 016224          129 KFLHSWTVGDGFKLLT--QLEGHQKVVSGITLPSGSDKLYSGSKD-----ETVRVWDCASGQCAGVINLGG---EVGCMI  198 (393)
Q Consensus       129 g~i~vwd~~~~~~~~~--~l~~h~~~I~~i~~s~~~~~l~s~s~d-----g~v~iwd~~~~~~~~~~~~~~---~~~~~~  198 (393)
                      ..+.+||..+. +-..  .+......-..+.+  ++.+++.|+.+     ..+.+||..+.+-...-..+.   ......
T Consensus        30 ~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~  106 (302)
T 2xn4_A           30 RSVECYDFKEE-RWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV  106 (302)
T ss_dssp             CCEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred             CcEEEEcCcCC-cEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE
Confidence            35788888766 3221  12211111111222  56667777654     368899998876443332222   123333


Q ss_pred             eCCCEEEEE-cC-----CeEEEEECCCCceeeecC---CCCcEEEEEEeCCEEEEEeCC-------CcEEEEEeccCCcc
Q 016224          199 SEGPWIFIG-VT-----NFVKAWNTQTNTDLSLSG---PVGQVYAMAVGNDLLFAGTQD-------GAILAWKFNVTTNC  262 (393)
Q Consensus       199 ~~~~~l~~~-~~-----~~i~v~d~~~~~~~~~~~---~~~~v~~l~~~~~~l~~~~~d-------g~I~vwd~~~~~~~  262 (393)
                      .++.+++.| .+     +.+.+||+.+.+-..+..   .......+.+...+++.|+.+       ..+.+||+.+..  
T Consensus       107 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--  184 (302)
T 2xn4_A          107 LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNE--  184 (302)
T ss_dssp             ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTE--
T ss_pred             ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCc--
Confidence            456665554 33     267889998877553322   112222333333366666542       347888876542  


Q ss_pred             ccCceeecCceeeEEEEEEcCCEEEEecCC-----CcEEEeeCCCccee--eEeccCccceEEEEEcCCEEEEEeCCC--
Q 016224          263 FEPAASLKGHSLAVVSLVVGANKLYSGSMD-----NSIRVWNLETLQCI--QTLTEHTSVVMSLLCWDQFLLSCSLDK--  333 (393)
Q Consensus       263 ~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d-----g~i~iwd~~~~~~~--~~~~~~~~~v~~l~~~~~~l~s~s~dg--  333 (393)
                      +..+..+.........+..++.+++.|+.+     ..+.+||+.+.+-.  ..+.........+...+.+++.|+.++  
T Consensus       185 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~  264 (302)
T 2xn4_A          185 WTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSC  264 (302)
T ss_dssp             EEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSS
T ss_pred             EEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCc
Confidence            222222221112223344566677777754     46899999875432  222212222234445577777777653  


Q ss_pred             ---cEEEEEcCCC
Q 016224          334 ---TIKVWFATDS  343 (393)
Q Consensus       334 ---~i~iwd~~~~  343 (393)
                         .+.+||+.+.
T Consensus       265 ~~~~v~~yd~~~~  277 (302)
T 2xn4_A          265 NLASVEYYNPTTD  277 (302)
T ss_dssp             BCCCEEEEETTTT
T ss_pred             ccccEEEEcCCCC
Confidence               4888888654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.49  E-value=0.11  Score=52.37  Aligned_cols=223  Identities=11%  Similarity=0.043  Sum_probs=124.9

Q ss_pred             EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEE-eCCCcEEEEECCCC----eEEEEEe--cCCce
Q 016224          122 CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG-SKDETVRVWDCASG----QCAGVIN--LGGEV  194 (393)
Q Consensus       122 ~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~-s~dg~v~iwd~~~~----~~~~~~~--~~~~~  194 (393)
                      .++-+....|+..++... .....+ .....+..|+|++....|+.+ ...+.|+.+++...    .....+.  ...+.
T Consensus       397 ~Ll~an~~~Ir~i~l~~~-~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~  474 (791)
T 3m0c_C          397 YLFFTNRHEVRKMTLDRS-EYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  474 (791)
T ss_dssp             EEEEECBSSEEEECTTSC-CCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             ccccccccceeEeeccCC-cceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence            344444556777777654 333233 345677899999865555544 45678888988753    2222232  11222


Q ss_pred             -EEEEeCCCEEEEE--cCCeEEEEECCCCceeee-cCCCCcEEEEEEeCC--EEEEEeC--CCcEEEEEeccCCccccCc
Q 016224          195 -GCMISEGPWIFIG--VTNFVKAWNTQTNTDLSL-SGPVGQVYAMAVGND--LLFAGTQ--DGAILAWKFNVTTNCFEPA  266 (393)
Q Consensus       195 -~~~~~~~~~l~~~--~~~~i~v~d~~~~~~~~~-~~~~~~v~~l~~~~~--~l~~~~~--dg~I~vwd~~~~~~~~~~~  266 (393)
                       ..+...+..|+..  ..+.|.+.++.......+ .........|++++.  .|+....  .+.|.+.++.....    .
T Consensus       475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~----~  550 (791)
T 3m0c_C          475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----Y  550 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE----E
T ss_pred             eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce----E
Confidence             2333345445543  456999999987665433 344556889999875  5554442  36788887765421    1


Q ss_pred             eeecCceeeEEEEEEc--CCEEEEe-cCCCcEEEeeCCCcceeeEecc--CccceEEEEEcCCEEEEE-eCCCcEEEEEc
Q 016224          267 ASLKGHSLAVVSLVVG--ANKLYSG-SMDNSIRVWNLETLQCIQTLTE--HTSVVMSLLCWDQFLLSC-SLDKTIKVWFA  340 (393)
Q Consensus       267 ~~~~~~~~~v~~l~~~--~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~l~s~-s~dg~i~iwd~  340 (393)
                      ..+...-.....|+++  ...|+.+ .....|..+|+........+..  .-....+|++.+++|+.. ...+.|...|.
T Consensus       551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk  630 (791)
T 3m0c_C          551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR  630 (791)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeC
Confidence            1122222344566665  4555544 4567899999865433333322  122345677776655544 45678888887


Q ss_pred             CCCcceEEEE
Q 016224          341 TDSGNLEVTY  350 (393)
Q Consensus       341 ~~~~~~~~~~  350 (393)
                      .+++.+..+.
T Consensus       631 ~tG~~~~~l~  640 (791)
T 3m0c_C          631 LTGSDVNLLA  640 (791)
T ss_dssp             TTCCCCEEEE
T ss_pred             CCCcceEEee
Confidence            6666555543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.48  E-value=0.05  Score=48.17  Aligned_cols=216  Identities=8%  Similarity=0.029  Sum_probs=112.8

Q ss_pred             EecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC----C-------CcEEEEECCCCeEEEEEecCC
Q 016224          124 YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK----D-------ETVRVWDCASGQCAGVINLGG  192 (393)
Q Consensus       124 ~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~----d-------g~v~iwd~~~~~~~~~~~~~~  192 (393)
                      +|+  ..+.+||..++.=....+..........+...++.+++.|+.    +       ..+.+||..+.+-...-..+.
T Consensus        10 ~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~   87 (315)
T 4asc_A           10 ISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPS   87 (315)
T ss_dssp             EET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSS
T ss_pred             EcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCc
Confidence            455  678999998772122333322122222223346778888873    1       127788988876433222222


Q ss_pred             c---eEEEEeCCCEEEEEc----C-----CeEEEEECCCCceeeecC---CCCcEEEEEEeCCEEEEEeC-C-----CcE
Q 016224          193 E---VGCMISEGPWIFIGV----T-----NFVKAWNTQTNTDLSLSG---PVGQVYAMAVGNDLLFAGTQ-D-----GAI  251 (393)
Q Consensus       193 ~---~~~~~~~~~~l~~~~----~-----~~i~v~d~~~~~~~~~~~---~~~~v~~l~~~~~~l~~~~~-d-----g~I  251 (393)
                      .   ......++.+++.|.    +     +.+.+||+.+++-..+..   .......+.+...+++.|+. +     ..+
T Consensus        88 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  167 (315)
T 4asc_A           88 PRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKM  167 (315)
T ss_dssp             CEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCE
T ss_pred             chhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceE
Confidence            1   122334566655542    1     368999998876543322   11222233333346666665 2     458


Q ss_pred             EEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCC-----cEEEeeCCCcceee--EeccCccceEEEEEcCC
Q 016224          252 LAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDN-----SIRVWNLETLQCIQ--TLTEHTSVVMSLLCWDQ  324 (393)
Q Consensus       252 ~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~l~~~~~  324 (393)
                      .+||+.+..  +..+..+......-.+...++.+++.|+.++     .+.+||+.+.+-..  .+.........+.+.+.
T Consensus       168 ~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~  245 (315)
T 4asc_A          168 CVYDPKKFE--WKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGT  245 (315)
T ss_dssp             EEEETTTTE--EEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTE
T ss_pred             EEEeCCCCe--EEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEECCE
Confidence            888877642  2222222221222233445667777777654     58889998754322  22222222344455677


Q ss_pred             EEEEEeCCC--------------cEEEEEcCCC
Q 016224          325 FLLSCSLDK--------------TIKVWFATDS  343 (393)
Q Consensus       325 ~l~s~s~dg--------------~i~iwd~~~~  343 (393)
                      +++.|+.++              .+.+||+.+.
T Consensus       246 l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  278 (315)
T 4asc_A          246 LYAIGGFATLETESGELVPTELNDIWRYNEEEK  278 (315)
T ss_dssp             EEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred             EEEECCccccCcCCccccccccCcEEEecCCCC
Confidence            777777532              3667777654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.48  E-value=0.021  Score=50.12  Aligned_cols=222  Identities=13%  Similarity=0.127  Sum_probs=113.8

Q ss_pred             CCEEEEEe-CC-----CcEEEEECCCCeEEEEEecCC---ceEEEEeCCCEEEEE-cC-----CeEEEEECCCCc---ee
Q 016224          162 SDKLYSGS-KD-----ETVRVWDCASGQCAGVINLGG---EVGCMISEGPWIFIG-VT-----NFVKAWNTQTNT---DL  223 (393)
Q Consensus       162 ~~~l~s~s-~d-----g~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~-~~-----~~i~v~d~~~~~---~~  223 (393)
                      +.+++.|+ .+     ..+.+||..+.+-...-..+.   .......++.+++.| .+     +.+.+||+.+++   -.
T Consensus        15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~   94 (301)
T 2vpj_A           15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWY   94 (301)
T ss_dssp             EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCE
T ss_pred             CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeE
Confidence            34555555 22     378889988775433222221   123334456666554 22     478999998877   33


Q ss_pred             eecC---CCCcEEEEEEeCCEEEEEeCC-----CcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCC---
Q 016224          224 SLSG---PVGQVYAMAVGNDLLFAGTQD-----GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD---  292 (393)
Q Consensus       224 ~~~~---~~~~v~~l~~~~~~l~~~~~d-----g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d---  292 (393)
                      .+..   .......+.+...+++.|+.+     ..+.+||+.+..  +..+..+......-.++..++.+++.|+.+   
T Consensus        95 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  172 (301)
T 2vpj_A           95 SVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQ--WSMLGDMQTAREGAGLVVASGVIYCLGGYDGLN  172 (301)
T ss_dssp             EECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE--EEEEEECSSCCBSCEEEEETTEEEEECCBCSSC
T ss_pred             ECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCe--EEECCCCCCCcccceEEEECCEEEEECCCCCCc
Confidence            2221   122223333333366666644     357788876543  222222222122223334466667777654   


Q ss_pred             --CcEEEeeCCCcceee--EeccCccceEEEEEcCCEEEEEeCC-----CcEEEEEcCCCcceEEEEeecCCccEEEEEe
Q 016224          293 --NSIRVWNLETLQCIQ--TLTEHTSVVMSLLCWDQFLLSCSLD-----KTIKVWFATDSGNLEVTYTHNEEHGVLALCG  363 (393)
Q Consensus       293 --g~i~iwd~~~~~~~~--~~~~~~~~v~~l~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  363 (393)
                        ..+.+||+.+.+-..  .+.........+.+.+.+++.|+.+     ..+.+||+.+.. ...+........-.+++.
T Consensus       173 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~~~~~~  251 (301)
T 2vpj_A          173 ILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS-WTTVTSMTTPRCYVGATV  251 (301)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEE
T ss_pred             ccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCc-EEECCCCCCcccceeEEE
Confidence              468899988754322  2222222234444556777777764     468999987543 233222111111111111


Q ss_pred             eeCCCCCcEEEEEeCC-----CeEEEEeCCce
Q 016224          364 MPDSEGKPVLLCSCND-----NSVRFYDLPSV  390 (393)
Q Consensus       364 ~~~~~~~~~l~s~s~d-----g~I~iwd~~s~  390 (393)
                      .    ++++++.|+.+     ..|.+||+.+.
T Consensus       252 ~----~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          252 L----RGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             E----TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             E----CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            1    33367777655     46788888764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.47  E-value=0.052  Score=48.33  Aligned_cols=219  Identities=12%  Similarity=0.044  Sum_probs=123.4

Q ss_pred             CCCeEEEEECCCCc-EEEEEecCCcCCEEEEEecCCCCEEE-EEeCCCcEEEEECCCCeE---EEEEecCCce-EEEEeC
Q 016224          127 KCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDETVRVWDCASGQC---AGVINLGGEV-GCMISE  200 (393)
Q Consensus       127 ~dg~i~vwd~~~~~-~~~~~l~~h~~~I~~i~~s~~~~~l~-s~s~dg~v~iwd~~~~~~---~~~~~~~~~~-~~~~~~  200 (393)
                      ....|+..+++... .....+. ....+.+|+|++.+..|+ +-...+.|..+++..+..   +.......+. ..+...
T Consensus        11 ~~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~   89 (318)
T 3sov_A           11 NRRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL   89 (318)
T ss_dssp             CEEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT
T ss_pred             ccCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC
Confidence            35678888887642 1111122 223567899988655555 445567899999876532   1111222222 223333


Q ss_pred             CCEE-EEE-cCCeEEEEECCCCceee-ecCCCCcEEEEEEeCC--EEEEEe--CCCcEEEEEeccCCccccCceeecCce
Q 016224          201 GPWI-FIG-VTNFVKAWNTQTNTDLS-LSGPVGQVYAMAVGND--LLFAGT--QDGAILAWKFNVTTNCFEPAASLKGHS  273 (393)
Q Consensus       201 ~~~l-~~~-~~~~i~v~d~~~~~~~~-~~~~~~~v~~l~~~~~--~l~~~~--~dg~I~vwd~~~~~~~~~~~~~~~~~~  273 (393)
                      +..| ++. ..+.|.++++....... ..........+++++.  .|+...  ..+.|...++.....    .......-
T Consensus        90 ~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~----~~~~~~~l  165 (318)
T 3sov_A           90 GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR----FIIINSEI  165 (318)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC----EEEECSSC
T ss_pred             CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe----EEEEECCC
Confidence            4444 444 45689999987654433 3345567789999874  555544  357788887764321    11111112


Q ss_pred             eeEEEEEEc--CCEEE-EecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCC-EEEEEeCCCcEEEEEcCCCcceEEE
Q 016224          274 LAVVSLVVG--ANKLY-SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ-FLLSCSLDKTIKVWFATDSGNLEVT  349 (393)
Q Consensus       274 ~~v~~l~~~--~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~  349 (393)
                      ..-..|+++  ++.|+ +=+..+.|..+|+........+......-..+++.++ ++++-...+.|..++..+++....+
T Consensus       166 ~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          166 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEE
Confidence            233556665  45544 4456788999998643322222223334466666654 4555556788999998777655554


Q ss_pred             E
Q 016224          350 Y  350 (393)
Q Consensus       350 ~  350 (393)
                      .
T Consensus       246 ~  246 (318)
T 3sov_A          246 H  246 (318)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.47  E-value=0.054  Score=48.49  Aligned_cols=187  Identities=14%  Similarity=0.200  Sum_probs=114.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCce-EEEEe----CCC---EEEEE--c--CCeEEEEEC--CCCceeeec
Q 016224          161 GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEV-GCMIS----EGP---WIFIG--V--TNFVKAWNT--QTNTDLSLS  226 (393)
Q Consensus       161 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~----~~~---~l~~~--~--~~~i~v~d~--~~~~~~~~~  226 (393)
                      ...+++.....+-+.+||+ +|+.++.+.....- ..+.+    .++   +++++  .  +++|.+|++  .+++...+.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~  117 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT  117 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence            3456777777889999999 88888888653211 11222    222   34444  3  579999966  444433331


Q ss_pred             C------C-CCcEEEEEE--eCC----EEEEEeCCCcEEEEEeccC---CccccCceeecCceeeEEEEEEc--CCEEEE
Q 016224          227 G------P-VGQVYAMAV--GND----LLFAGTQDGAILAWKFNVT---TNCFEPAASLKGHSLAVVSLVVG--ANKLYS  288 (393)
Q Consensus       227 ~------~-~~~v~~l~~--~~~----~l~~~~~dg~I~vwd~~~~---~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s  288 (393)
                      .      . ...+..+++  ++.    ++++...+|.+..|++...   ....+.+..+.-. ..+-.+..+  ..+|+.
T Consensus       118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv  196 (355)
T 3amr_A          118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYI  196 (355)
T ss_dssp             CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEE
T ss_pred             ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEE
Confidence            1      1 156667777  553    6888899999999998542   1222444554432 344555555  468999


Q ss_pred             ecCCCcEEEeeCC-----CcceeeEec-cC-ccceEEEEEc----CC-EEEEEe-CCCcEEEEEcC-CCcceEEE
Q 016224          289 GSMDNSIRVWNLE-----TLQCIQTLT-EH-TSVVMSLLCW----DQ-FLLSCS-LDKTIKVWFAT-DSGNLEVT  349 (393)
Q Consensus       289 g~~dg~i~iwd~~-----~~~~~~~~~-~~-~~~v~~l~~~----~~-~l~s~s-~dg~i~iwd~~-~~~~~~~~  349 (393)
                      +-++.-|..+|.+     +++.+..+. ++ ...+..|+..    ++ +|++++ .+.+..+||.. +.+.+..+
T Consensus       197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence            9998777777755     355665553 22 2356666663    23 666666 57799999996 44444444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.45  E-value=0.033  Score=49.90  Aligned_cols=182  Identities=13%  Similarity=0.137  Sum_probs=103.0

Q ss_pred             EEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCCE--------EEE-Ee-C--CCcEEEEEeccCCccccCcee---
Q 016224          204 IFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDL--------LFA-GT-Q--DGAILAWKFNVTTNCFEPAAS---  268 (393)
Q Consensus       204 l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~~--------l~~-~~-~--dg~I~vwd~~~~~~~~~~~~~---  268 (393)
                      |.+...+.+.+||+ .++.+..... +.+..+..-+++        ++. .. .  +++|.+|++.........+..   
T Consensus        44 i~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~  121 (355)
T 3amr_A           44 ITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDH  121 (355)
T ss_dssp             EEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTS
T ss_pred             EEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccccc
Confidence            33446679999999 6666533322 567776665542        333 33 3  578999988533221111111   


Q ss_pred             -ecCceeeEEEEEE--c---CC-EEEEecCCCcEEEeeCC-------CcceeeEeccCccceEEEEEc--CCEEEEEeCC
Q 016224          269 -LKGHSLAVVSLVV--G---AN-KLYSGSMDNSIRVWNLE-------TLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLD  332 (393)
Q Consensus       269 -~~~~~~~v~~l~~--~---~~-~l~sg~~dg~i~iwd~~-------~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~d  332 (393)
                       +......+..++.  +   +. ++++...+|.+..|++.       +.+.+++|... +.+-.+..+  ...|+.+-++
T Consensus       122 pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd  200 (355)
T 3amr_A          122 PIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEED  200 (355)
T ss_dssp             CEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETT
T ss_pred             CcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEeccc
Confidence             0000023333443  3   33 68888889999999882       44667777654 355566666  5689999998


Q ss_pred             CcEEEEEcCCCc--ceEEEE--eec-CCccEEEEEeeeCCCCCcEEEEEe-CCCeEEEEeCC
Q 016224          333 KTIKVWFATDSG--NLEVTY--THN-EEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFYDLP  388 (393)
Q Consensus       333 g~i~iwd~~~~~--~~~~~~--~~~-~~~~v~~~~~~~~~~~~~~l~s~s-~dg~I~iwd~~  388 (393)
                      ..|..++.+...  ....+.  ... -...+-.++.-+...+..+|++++ .++++.+||..
T Consensus       201 ~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          201 EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            766666644221  111221  111 112366666654433333566555 57899999986

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.45  E-value=0.034  Score=48.97  Aligned_cols=220  Identities=10%  Similarity=0.072  Sum_probs=113.3

Q ss_pred             EEEEEeC--CCcEEEEECCCCeEEEEEecCC---ceEEEEeCCCEEEEE-cC----CeEEEEECCCCceeeecC---CCC
Q 016224          164 KLYSGSK--DETVRVWDCASGQCAGVINLGG---EVGCMISEGPWIFIG-VT----NFVKAWNTQTNTDLSLSG---PVG  230 (393)
Q Consensus       164 ~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~-~~----~~i~v~d~~~~~~~~~~~---~~~  230 (393)
                      +++.|+.  ...+.+||..+.+-...-..+.   .......++.+++.| .+    +.+.+||+.+++-..+..   ...
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~   93 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD   93 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc
Confidence            4455554  3578899998876443222221   123333466665554 32    578899999887543322   122


Q ss_pred             cEEEEEEeCCEEEEEeCC------CcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecC---------CCcE
Q 016224          231 QVYAMAVGNDLLFAGTQD------GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSM---------DNSI  295 (393)
Q Consensus       231 ~v~~l~~~~~~l~~~~~d------g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~---------dg~i  295 (393)
                      ....+.+...+++.|+.+      ..+.+||+.+..  +..+..+......-..+..++.+++.|+.         -..+
T Consensus        94 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  171 (306)
T 3ii7_A           94 SLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTES--WHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSC  171 (306)
T ss_dssp             SCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCE
T ss_pred             ceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCc--eEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceE
Confidence            223333433466677655      458888877643  12222221111112233456666666653         3458


Q ss_pred             EEeeCCCccee--eEeccCccceEEEEEcCCEEEEEeCC-----CcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCC
Q 016224          296 RVWNLETLQCI--QTLTEHTSVVMSLLCWDQFLLSCSLD-----KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE  368 (393)
Q Consensus       296 ~iwd~~~~~~~--~~~~~~~~~v~~l~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  368 (393)
                      .+||+.+.+-.  ..+......-..+...+.+++.|+.+     ..+.+||+.+.. ...+........-..++..    
T Consensus       172 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~----  246 (306)
T 3ii7_A          172 EVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCAAV----  246 (306)
T ss_dssp             EEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEEEE----
T ss_pred             EEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeEEEE----
Confidence            89999876432  22222222223444456677777654     358889986543 2222211111111111111    


Q ss_pred             CCcEEEEEeCC-----CeEEEEeCCce
Q 016224          369 GKPVLLCSCND-----NSVRFYDLPSV  390 (393)
Q Consensus       369 ~~~~l~s~s~d-----g~I~iwd~~s~  390 (393)
                      ++.+++.|+.+     ..|.+||+.+.
T Consensus       247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          247 GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            33477777744     56888998764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.43  E-value=0.07  Score=48.89  Aligned_cols=211  Identities=9%  Similarity=-0.056  Sum_probs=116.9

Q ss_pred             CCcEEEEECCCCeEEEEEecCCceEEEE--eCCCEEE-EE-cCCeEEEEECCCCceeee-cCCCCcEEEEEEeCC---EE
Q 016224          171 DETVRVWDCASGQCAGVINLGGEVGCMI--SEGPWIF-IG-VTNFVKAWNTQTNTDLSL-SGPVGQVYAMAVGND---LL  242 (393)
Q Consensus       171 dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~l~-~~-~~~~i~v~d~~~~~~~~~-~~~~~~v~~l~~~~~---~l  242 (393)
                      ...|+..++.................+.  .....|+ +. ..+.|..+++.......+ .........+++++.   ++
T Consensus        95 ~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY  174 (386)
T 3v65_B           95 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLY  174 (386)
T ss_dssp             BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEE
T ss_pred             CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEE
Confidence            3578888887766555554444444333  3344444 44 456899999887654432 222334566777753   55


Q ss_pred             EEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEE-EecCC-CcEEEeeCCCcceeeEeccCccceEE
Q 016224          243 FAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLY-SGSMD-NSIRVWNLETLQCIQTLTEHTSVVMS  318 (393)
Q Consensus       243 ~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~-sg~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~  318 (393)
                      ++-...+.|.+.++....    ....+.........++++  +..|+ +-... +.|..+++............-..-..
T Consensus       175 ~~d~~~~~I~~~~~dg~~----~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnG  250 (386)
T 3v65_B          175 WTDSGTSRIEVANLDGAH----RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNG  250 (386)
T ss_dssp             EEETTTTEEEECBTTSCS----CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred             EEcCCCCeEEEEeCCCCc----eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeee
Confidence            555667788888776432    111122222334566665  44444 44344 78888887643332222223334577


Q ss_pred             EEEc--CCEE-EEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          319 LLCW--DQFL-LSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       319 l~~~--~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      |+++  +..| ++-+..+.|..+|+..... ..+.... ......++. .   ++.++++-...+.|..++..+++
T Consensus       251 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~-~~~P~giav-~---~~~ly~td~~~~~V~~~~~~~G~  320 (386)
T 3v65_B          251 LTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQG-LPHPFAITV-F---EDSLYWTDWHTKSINSANKFTGK  320 (386)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEECSS-CSSEEEEEE-E---TTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEEECC-CCCceEEEE-E---CCEEEEeeCCCCeEEEEECCCCc
Confidence            8886  4444 4445567899999864332 3332211 223455555 2   22366666677888888865553

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.43  E-value=0.024  Score=50.05  Aligned_cols=223  Identities=12%  Similarity=0.124  Sum_probs=113.1

Q ss_pred             CCCEEEEEeCC----CcEEEEECCCCeEEEEEecCC---ceEEEEeCCCEEEEE-c----C-----CeEEEEECCCCcee
Q 016224          161 GSDKLYSGSKD----ETVRVWDCASGQCAGVINLGG---EVGCMISEGPWIFIG-V----T-----NFVKAWNTQTNTDL  223 (393)
Q Consensus       161 ~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~-~----~-----~~i~v~d~~~~~~~  223 (393)
                      ++.+++.|+.+    ..+.+||..+.+-...-..+.   .......++.+++.| .    +     +.+.+||+.+.+-.
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~  103 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS  103 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence            45566666532    368888988776443322221   112233455555554 2    2     46889999887754


Q ss_pred             eecC---CCCcEEEEEEeCCEEEEEeCC-----CcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCC---
Q 016224          224 SLSG---PVGQVYAMAVGNDLLFAGTQD-----GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD---  292 (393)
Q Consensus       224 ~~~~---~~~~v~~l~~~~~~l~~~~~d-----g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d---  292 (393)
                      .+..   .......+.+...+++.|+.+     ..+.+||+.+..  ++.+..+......-.++..++.+++.|+.+   
T Consensus       104 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  181 (308)
T 1zgk_A          104 PCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDE--WHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTN  181 (308)
T ss_dssp             ECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTEEEEECCBCSSC
T ss_pred             ECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCe--EeECCCCCccccceEEEEECCEEEEEeCCCCCC
Confidence            3322   122223333433366666543     357788876543  122222221111222334466667777654   


Q ss_pred             --CcEEEeeCCCccee--eEeccCccceEEEEEcCCEEEEEeCC-----CcEEEEEcCCCcceEEEEeecCCccEEEEEe
Q 016224          293 --NSIRVWNLETLQCI--QTLTEHTSVVMSLLCWDQFLLSCSLD-----KTIKVWFATDSGNLEVTYTHNEEHGVLALCG  363 (393)
Q Consensus       293 --g~i~iwd~~~~~~~--~~~~~~~~~v~~l~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  363 (393)
                        ..+.+||+.+.+-.  ..+.........+.+.+.+++.|+.+     ..+.+||+.+.. ...+........-.+++.
T Consensus       182 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~~~~~~  260 (308)
T 1zgk_A          182 RLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETET-WTFVAPMKHRRSALGITV  260 (308)
T ss_dssp             BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEE
T ss_pred             cCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCc-EEECCCCCCCccceEEEE
Confidence              46889998765432  22222222234444556777777664     568999987543 222221111111111111


Q ss_pred             eeCCCCCcEEEEEeCC-----CeEEEEeCCce
Q 016224          364 MPDSEGKPVLLCSCND-----NSVRFYDLPSV  390 (393)
Q Consensus       364 ~~~~~~~~~l~s~s~d-----g~I~iwd~~s~  390 (393)
                      .    ++++++.|+.+     ..|.+||+.+.
T Consensus       261 ~----~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          261 H----QGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             E----TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             E----CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            1    33477777643     45788888764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.42  E-value=0.075  Score=48.96  Aligned_cols=223  Identities=10%  Similarity=0.046  Sum_probs=127.0

Q ss_pred             EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe-CCCcEEEEECCCC----eEEEEEe-cCCceE
Q 016224          122 CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVWDCASG----QCAGVIN-LGGEVG  195 (393)
Q Consensus       122 ~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s-~dg~v~iwd~~~~----~~~~~~~-~~~~~~  195 (393)
                      .++-+....|+..++... .....+ .....+..|+|++.+..|+-+. ..+.|..+++...    .....+. ......
T Consensus        85 ~ll~~~~~~I~~i~l~~~-~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFTNRHEVRKMTLDRS-EYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEEETTEEEEECTTSC-SCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEeccceeEEEccCCc-ceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            344444577888888765 333233 3456788999998766666554 4678888988652    2222232 112222


Q ss_pred             EE--EeCCCEEE-EE-cCCeEEEEECCCCceee-ecCCCCcEEEEEEeCC--EEEEEe--CCCcEEEEEeccCCccccCc
Q 016224          196 CM--ISEGPWIF-IG-VTNFVKAWNTQTNTDLS-LSGPVGQVYAMAVGND--LLFAGT--QDGAILAWKFNVTTNCFEPA  266 (393)
Q Consensus       196 ~~--~~~~~~l~-~~-~~~~i~v~d~~~~~~~~-~~~~~~~v~~l~~~~~--~l~~~~--~dg~I~vwd~~~~~~~~~~~  266 (393)
                      .+  ...+..|+ +. ..+.|.+.++....... +.........|+++|.  .|+...  ..+.|...++.....    .
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~----~  238 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----Y  238 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC----E
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc----E
Confidence            22  23244444 44 45689999988765543 3334556889999874  444443  246788888765321    1


Q ss_pred             eeecCceeeEEEEEEc--CCEEEEe-cCCCcEEEeeCCCcceeeEecc--CccceEEEEEcCC-EEEEEeCCCcEEEEEc
Q 016224          267 ASLKGHSLAVVSLVVG--ANKLYSG-SMDNSIRVWNLETLQCIQTLTE--HTSVVMSLLCWDQ-FLLSCSLDKTIKVWFA  340 (393)
Q Consensus       267 ~~~~~~~~~v~~l~~~--~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~-~l~s~s~dg~i~iwd~  340 (393)
                      ......-.....|+++  +..|+.+ ...+.|..+|+........+..  ....-..+++.++ ++++-...+.|..+|.
T Consensus       239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~  318 (400)
T 3p5b_L          239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR  318 (400)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEES
T ss_pred             EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEc
Confidence            1112222334566665  4555544 4567899999865333222221  2233456666655 5556666788999997


Q ss_pred             CCCcceEEEE
Q 016224          341 TDSGNLEVTY  350 (393)
Q Consensus       341 ~~~~~~~~~~  350 (393)
                      .+++....+.
T Consensus       319 ~~G~~~~~i~  328 (400)
T 3p5b_L          319 LTGSDVNLLA  328 (400)
T ss_dssp             SSCCCCEEEE
T ss_pred             CCCCceEEEe
Confidence            6776655544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.41  E-value=0.049  Score=46.66  Aligned_cols=192  Identities=13%  Similarity=0.093  Sum_probs=117.3

Q ss_pred             EEecCCcCCEEEEEecCCCCEEEE-EeCCCcEEEEECCCCeEEEEEecC--CceEEE--EeCCCEEEEE-cCCeEEEEEC
Q 016224          144 TQLEGHQKVVSGITLPSGSDKLYS-GSKDETVRVWDCASGQCAGVINLG--GEVGCM--ISEGPWIFIG-VTNFVKAWNT  217 (393)
Q Consensus       144 ~~l~~h~~~I~~i~~s~~~~~l~s-~s~dg~v~iwd~~~~~~~~~~~~~--~~~~~~--~~~~~~l~~~-~~~~i~v~d~  217 (393)
                      +.+.+-...+..|+++|+++.|++ ...++.|...|.. ++.++.+...  .....+  ..++.++++. .++.+.++++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            356666678999999998766654 7778999999998 8888888654  233333  3456555555 4568888887


Q ss_pred             CCCce---e-ee------cCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeec-------CceeeEEE
Q 016224          218 QTNTD---L-SL------SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK-------GHSLAVVS  278 (393)
Q Consensus       218 ~~~~~---~-~~------~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~-------~~~~~v~~  278 (393)
                      .....   . ..      .........|++++.  .|+++.+.....+|.+..... ...+..+.       .+.....+
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~-~~~l~i~~~~~~~~~~~~~d~S~  177 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS-SNELHISKDKALQRQFTLDDVSG  177 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTC-SSCCEEEECHHHHHTCCSSCCCE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccccc-CCceeeecchhhccccccCCcee
Confidence            65442   1 11      122344689999987  666666666666666652100 00111110       11223466


Q ss_pred             EEEc---CCEEEEecCCCcEEEeeCCCcceeeEeccCc---------cceEEEEEc--CCEEEEEeCCCcEEEEE
Q 016224          279 LVVG---ANKLYSGSMDNSIRVWNLETLQCIQTLTEHT---------SVVMSLLCW--DQFLLSCSLDKTIKVWF  339 (393)
Q Consensus       279 l~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~l~~~--~~~l~s~s~dg~i~iwd  339 (393)
                      ++++   +++++.......|.++|.. ++.+..+.-..         ..--.|+++  |+ |+..++-+.++.+.
T Consensus       178 l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          178 AEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT  250 (255)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred             EEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence            7776   3467777788899999976 55655554221         244677787  44 44456666666554

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.39  E-value=0.061  Score=47.28  Aligned_cols=212  Identities=6%  Similarity=0.035  Sum_probs=112.5

Q ss_pred             CCeEEEEECCCC-cEEEEEecCCcCCEEEEEecCCCCEEEEEeCC----CcEEEEECCCCeEEEEEecCCc---eEEEEe
Q 016224          128 CKFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD----ETVRVWDCASGQCAGVINLGGE---VGCMIS  199 (393)
Q Consensus       128 dg~i~vwd~~~~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~~~~~~---~~~~~~  199 (393)
                      ...+.+||..+. ++.+..+......-..+.+  ++.+++.|+.+    ..+.+||..+.+-...-..+..   ......
T Consensus        23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~  100 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA  100 (306)
T ss_dssp             TTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE
T ss_pred             CceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE
Confidence            457889998876 1222222221122222222  55667777754    6788999988765444333221   233334


Q ss_pred             CCCEEEEE-cC------CeEEEEECCCCceeeecC---CCCcEEEEEEeCCEEEEEeC---------CCcEEEEEeccCC
Q 016224          200 EGPWIFIG-VT------NFVKAWNTQTNTDLSLSG---PVGQVYAMAVGNDLLFAGTQ---------DGAILAWKFNVTT  260 (393)
Q Consensus       200 ~~~~l~~~-~~------~~i~v~d~~~~~~~~~~~---~~~~v~~l~~~~~~l~~~~~---------dg~I~vwd~~~~~  260 (393)
                      ++.+++.| .+      ..+.+||+.+.+-..+..   .......+.+...+++.|+.         -..+.+||+.+..
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~  180 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET  180 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence            66666654 33      368999999887543322   11222233333335555553         3457888877653


Q ss_pred             ccccCceeecCceeeEEEEEEcCCEEEEecCC-----CcEEEeeCCCcce--eeEeccCccceEEEEEcCCEEEEEeCC-
Q 016224          261 NCFEPAASLKGHSLAVVSLVVGANKLYSGSMD-----NSIRVWNLETLQC--IQTLTEHTSVVMSLLCWDQFLLSCSLD-  332 (393)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d-----g~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~l~s~s~d-  332 (393)
                        +..+..+......-..+..++.+++.|+.+     ..+.+||+.+.+-  +..+........++...+.+++.|+.+ 
T Consensus       181 --W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~  258 (306)
T 3ii7_A          181 --WTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQG  258 (306)
T ss_dssp             --EEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEECBCS
T ss_pred             --EEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEEeCcCC
Confidence              222222221112223334466667777653     4688999987542  222222222334455567777788754 


Q ss_pred             ----CcEEEEEcCCC
Q 016224          333 ----KTIKVWFATDS  343 (393)
Q Consensus       333 ----g~i~iwd~~~~  343 (393)
                          ..+.+||+.+.
T Consensus       259 ~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          259 VGRLGHILEYNTETD  273 (306)
T ss_dssp             SSBCCEEEEEETTTT
T ss_pred             CeeeeeEEEEcCCCC
Confidence                45888888654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.34  E-value=0.046  Score=48.37  Aligned_cols=175  Identities=12%  Similarity=0.153  Sum_probs=93.1

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEecCC-----ceEEEEeCCCEEEEEc-----CC-------eEEEEECCCCceeeec
Q 016224          164 KLYSGSKDETVRVWDCASGQCAGVINLGG-----EVGCMISEGPWIFIGV-----TN-------FVKAWNTQTNTDLSLS  226 (393)
Q Consensus       164 ~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~-----~~-------~i~v~d~~~~~~~~~~  226 (393)
                      +++.|+  ..+.+||..+++-.. ...+.     .......++.+++.|.     ++       .+..||..+++-..+.
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            344455  578999998887443 33221     1222334666666553     11       3788999887754332


Q ss_pred             CCCC---cEEEEEEeCCEEEEEeCC--------CcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecC-C--
Q 016224          227 GPVG---QVYAMAVGNDLLFAGTQD--------GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSM-D--  292 (393)
Q Consensus       227 ~~~~---~v~~l~~~~~~l~~~~~d--------g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~-d--  292 (393)
                      ....   ....+.+...+++.|+.+        ..+.+||+.+..  ++.+..+......-.++..++.+++.|+. +  
T Consensus        84 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  161 (315)
T 4asc_A           84 PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFK--WGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDR  161 (315)
T ss_dssp             CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTEEEEECCBCTTS
T ss_pred             CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCc--EeECCCCCCcccceeEEEECCEEEEEeCCCCCC
Confidence            2211   112223333366666632        457888877642  22222222222222334456667777765 2  


Q ss_pred             ---CcEEEeeCCCcce--eeEeccCccceEEEEEcCCEEEEEeCCC-----cEEEEEcCCC
Q 016224          293 ---NSIRVWNLETLQC--IQTLTEHTSVVMSLLCWDQFLLSCSLDK-----TIKVWFATDS  343 (393)
Q Consensus       293 ---g~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~l~s~s~dg-----~i~iwd~~~~  343 (393)
                         ..+.+||+.+.+-  +..+........++...+++++.|+.++     .+.+||+.+.
T Consensus       162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             cccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCC
Confidence               4689999887543  2222222222344455677777777654     4788888654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.29  E-value=0.11  Score=48.25  Aligned_cols=143  Identities=8%  Similarity=-0.015  Sum_probs=86.3

Q ss_pred             EEeeEec---CcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC-C----cEEEEECCCCeE
Q 016224          113 LCRNWVQ---GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD-E----TVRVWDCASGQC  184 (393)
Q Consensus       113 ~c~~~~~---~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d-g----~v~iwd~~~~~~  184 (393)
                      ..+++.+   +.+++....+.|+.+|...+ +.. .+.........|+|++++++|+.+... +    .+.+.+. .+..
T Consensus       140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~-~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~  216 (430)
T 3tc9_A          140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKE-YVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGF  216 (430)
T ss_dssp             CEEEEETTEEEEEEEEEBTEEEEEEETTTT-EEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTS
T ss_pred             CEEEECCCCCCeEEEEeCCCcEEEEECCCC-EEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCce
Confidence            5567774   34555554488999998876 443 333355678899999999977766542 1    2333443 2221


Q ss_pred             E--EEEe-cCCc-eEEEEe-CCCEEEEE-cCCeEEEEECCCCceeee--cCCCCcEEEEEEeCC---EEEEEeCCCcEEE
Q 016224          185 A--GVIN-LGGE-VGCMIS-EGPWIFIG-VTNFVKAWNTQTNTDLSL--SGPVGQVYAMAVGND---LLFAGTQDGAILA  253 (393)
Q Consensus       185 ~--~~~~-~~~~-~~~~~~-~~~~l~~~-~~~~i~v~d~~~~~~~~~--~~~~~~v~~l~~~~~---~l~~~~~dg~I~v  253 (393)
                      .  ..+. ...+ -..+.+ ++.++++. ..+.|..++..++....+  .........|+++++   ++++-...+.|..
T Consensus       217 ~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~  296 (430)
T 3tc9_A          217 KVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR  296 (430)
T ss_dssp             CSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence            1  2221 2222 223344 56666665 557999999987765222  222345778999987   4455556788999


Q ss_pred             EEecc
Q 016224          254 WKFNV  258 (393)
Q Consensus       254 wd~~~  258 (393)
                      ++...
T Consensus       297 ~~~d~  301 (430)
T 3tc9_A          297 SDYDW  301 (430)
T ss_dssp             EEEET
T ss_pred             EeCCc
Confidence            88764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.26  E-value=0.1  Score=47.06  Aligned_cols=224  Identities=9%  Similarity=-0.038  Sum_probs=121.3

Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEE--eCCCEEE-EE-cCCeEEEEECCCCceeee-cCC
Q 016224          154 SGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI--SEGPWIF-IG-VTNFVKAWNTQTNTDLSL-SGP  228 (393)
Q Consensus       154 ~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~l~-~~-~~~~i~v~d~~~~~~~~~-~~~  228 (393)
                      +|.+..++ .+|+.+ ....|+..++........+........+.  .....|+ +. ..+.|..+++.......+ ...
T Consensus        37 ~C~~~~~~-~~ll~~-~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~  114 (349)
T 3v64_C           37 SCKALGPE-PVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG  114 (349)
T ss_dssp             CEEESSSC-CEEEEE-CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred             cccccccC-ceeEee-cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC
Confidence            34444443 333333 33457777877665554444433343333  3444444 44 456888899887654432 223


Q ss_pred             CCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCE-EEEecCC-CcEEEeeCC
Q 016224          229 VGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANK-LYSGSMD-NSIRVWNLE  301 (393)
Q Consensus       229 ~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~-l~sg~~d-g~i~iwd~~  301 (393)
                      ......+++++.   ++++-...+.|.+.++.....    .............++++  +.. +++-... +.|..+++.
T Consensus       115 ~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~----~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d  190 (349)
T 3v64_C          115 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR----KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  190 (349)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce----EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC
Confidence            344567787753   556666678899998875421    11122222334566665  344 4444444 788888876


Q ss_pred             CcceeeEe-ccCccceEEEEEc--CCEEE-EEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe
Q 016224          302 TLQCIQTL-TEHTSVVMSLLCW--DQFLL-SCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC  377 (393)
Q Consensus       302 ~~~~~~~~-~~~~~~v~~l~~~--~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s  377 (393)
                      .. ....+ ...-..-..|+++  +..|+ +-...+.|..+|+.... ...+.... ......++..    ++.++++-.
T Consensus       191 G~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~-~~~~~~~~-~~~P~giav~----~~~ly~td~  263 (349)
T 3v64_C          191 GS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKAVISQG-LPHPFAITVF----EDSLYWTDW  263 (349)
T ss_dssp             SC-SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSS-CSSEEEEEEE----TTEEEEEET
T ss_pred             CC-CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc-eEEEEeCC-CCCceEEEEE----CCEEEEecC
Confidence            43 33333 2223345778887  44444 44556789999986433 23332211 2234555551    223556666


Q ss_pred             CCCeEEEEeCCce
Q 016224          378 NDNSVRFYDLPSV  390 (393)
Q Consensus       378 ~dg~I~iwd~~s~  390 (393)
                      ..+.|..++..+|
T Consensus       264 ~~~~V~~~~~~~G  276 (349)
T 3v64_C          264 HTKSINSANKFTG  276 (349)
T ss_dssp             TTTEEEEEETTTC
T ss_pred             CCCeEEEEEccCC
Confidence            6788888875554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.25  E-value=0.27  Score=51.75  Aligned_cols=265  Identities=13%  Similarity=0.092  Sum_probs=148.0

Q ss_pred             cEEEecCCCeEEEEECCCCcE-----EEEEecC----CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC--------e
Q 016224          121 NCMYGEKCKFLHSWTVGDGFK-----LLTQLEG----HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG--------Q  183 (393)
Q Consensus       121 ~~~~g~~dg~i~vwd~~~~~~-----~~~~l~~----h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~--------~  183 (393)
                      .++.+..+|.++.-.+.....     .+..++-    ....-++|++-.+ .+|+.|+..|.=.+|.+...        +
T Consensus       288 ~~LL~~~~G~l~~l~l~~d~~~~~~~~V~~l~i~~~~~~~~~ssl~~l~~-g~lFvgS~~Gds~l~~~~~~~~~~~~~~~  366 (1158)
T 3ei3_A          288 RYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDN-GVVFVGSRLGDSQLVKLNVDSNEQGSYVV  366 (1158)
T ss_dssp             EEEEEETTCEEEEEEEEEEC-----CEEEEEEEEEEEECSCCSEEEECST-TEEEEECSSSCEEEEEECSSCCTTSCCEE
T ss_pred             EEEEEeCCCCEEEEEEEEcCCccCceeEEEEEEEEcCCccCccEEEEECC-CEEEEEEecCCcEEEEEecCCCCccceEE
Confidence            466788899887655431101     2222221    1222245666544 48999998887777776543        3


Q ss_pred             EEEEEecCCceEEEEe-------CCCEEEEE---cCCeEEEEECCCCcee----eecCCCCcEEEEEEe-----CCEEEE
Q 016224          184 CAGVINLGGEVGCMIS-------EGPWIFIG---VTNFVKAWNTQTNTDL----SLSGPVGQVYAMAVG-----NDLLFA  244 (393)
Q Consensus       184 ~~~~~~~~~~~~~~~~-------~~~~l~~~---~~~~i~v~d~~~~~~~----~~~~~~~~v~~l~~~-----~~~l~~  244 (393)
                      .+..+..-.++..+.-       ..++++++   .++.++++.-.-+-..    .+. ....++.+...     .++|+.
T Consensus       367 ~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~-gv~~iWtl~~~~~~~~~~yLvl  445 (1158)
T 3ei3_A          367 AMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLP-GIKGLWPLRSDPNRETDDTLVL  445 (1158)
T ss_dssp             EEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEEEEECCC-SCCEEEEECCCSSCSSCCEEEE
T ss_pred             eEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEEEeecCC-CccEEEEEeecCCCCCCCEEEE
Confidence            4566666566655431       12344443   4567877653322221    222 23556666543     127777


Q ss_pred             EeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccC-ccceEEEEEcC
Q 016224          245 GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEH-TSVVMSLLCWD  323 (393)
Q Consensus       245 ~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~  323 (393)
                      +..+.+ .++.+............+......+.+-...++.++=... ..|++.+......+..+... ...|...+..+
T Consensus       446 S~~~~T-~Vl~i~~e~veev~~~gf~~~~~TL~~~~l~~~~ivQVt~-~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~  523 (1158)
T 3ei3_A          446 SFVGQT-RVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITS-ASVRLVSQEPKALVSEWKEPQAKNISVASCNS  523 (1158)
T ss_dssp             EETTEE-EEEEEETTEEEEECCTTCCSSSCEEEEEEETTTEEEEEES-SCEEEEESSSCCEEEEECCTTCCCCCEEEECS
T ss_pred             ECCCCe-EEEEEeCCcccccccccccCCCCcEEEEEcCCCeEEEEec-CEEEEEECCCCeEEEEEECCCCCEEEEEEeCC
Confidence            666666 4555532211000011111122233333334455554443 45788887766677777643 34677777777


Q ss_pred             CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCC---CcEEEEEeC-CCeEEEEeCCcee
Q 016224          324 QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEG---KPVLLCSCN-DNSVRFYDLPSVI  391 (393)
Q Consensus       324 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~l~s~s~-dg~I~iwd~~s~~  391 (393)
                      .+++.++ .+.+.++.+.++. +........+..+.++.+.+..++   ..+++.|.. |++|+|+++++.+
T Consensus       524 ~~vvva~-g~~l~~fel~~~~-L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~  593 (1158)
T 3ei3_A          524 SQVVVAV-GRALYYLQIHPQE-LRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE  593 (1158)
T ss_dssp             SEEEEEE-TTEEEEEEEETTE-EEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred             CEEEEEE-CCEEEEEEeeCCc-eeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence            7777775 6788888886543 333333334456888887764322   358999997 9999999998754

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.24  E-value=0.074  Score=47.94  Aligned_cols=229  Identities=9%  Similarity=0.060  Sum_probs=114.8

Q ss_pred             cCcEE-Eec-CCCeEEEEECCC---CcEEEEEec-CCcCCEEEEEecCCCCEEEEEeC-C---------CcEEEEECCCC
Q 016224          119 QGNCM-YGE-KCKFLHSWTVGD---GFKLLTQLE-GHQKVVSGITLPSGSDKLYSGSK-D---------ETVRVWDCASG  182 (393)
Q Consensus       119 ~~~~~-~g~-~dg~i~vwd~~~---~~~~~~~l~-~h~~~I~~i~~s~~~~~l~s~s~-d---------g~v~iwd~~~~  182 (393)
                      .+.++ +|+ ....+.++|..+   .++.+..+. .....-..+.+  ++.+++.|+. +         ..+.+||..+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            44444 343 445788999863   233333333 11112222222  4566666665 2         46889999887


Q ss_pred             eEEEEEecC-C---ceEEEEeCCCEEEEEc-C---------------------------------------CeEEEEECC
Q 016224          183 QCAGVINLG-G---EVGCMISEGPWIFIGV-T---------------------------------------NFVKAWNTQ  218 (393)
Q Consensus       183 ~~~~~~~~~-~---~~~~~~~~~~~l~~~~-~---------------------------------------~~i~v~d~~  218 (393)
                      +-...-... .   ....+..++++++.|. +                                       +.+.+||+.
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~  176 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS  176 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred             cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence            543322222 1   1233446677666652 2                                       579999999


Q ss_pred             CCceeeecCC--CCcE-EEEEEeCC-EEEEEeC------CCcEEEEEeccCCccccCceeecCc--eeeEEEEEEcCCEE
Q 016224          219 TNTDLSLSGP--VGQV-YAMAVGND-LLFAGTQ------DGAILAWKFNVTTNCFEPAASLKGH--SLAVVSLVVGANKL  286 (393)
Q Consensus       219 ~~~~~~~~~~--~~~v-~~l~~~~~-~l~~~~~------dg~I~vwd~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~l  286 (393)
                      +.+-..+...  ...- .+++...+ +++.|+.      ...+.+||+......+..+..+...  .....++..++.++
T Consensus       177 ~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iy  256 (357)
T 2uvk_A          177 TQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLI  256 (357)
T ss_dssp             TTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEE
T ss_pred             CCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEE
Confidence            8875533211  1111 33444445 5666553      3457778763333333332222111  11122445566677


Q ss_pred             EEecCC----------------------CcEEEeeCCCcc--eeeEeccCccceEEEEEcCCEEEEEeCCC------cEE
Q 016224          287 YSGSMD----------------------NSIRVWNLETLQ--CIQTLTEHTSVVMSLLCWDQFLLSCSLDK------TIK  336 (393)
Q Consensus       287 ~sg~~d----------------------g~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~~l~s~s~dg------~i~  336 (393)
                      +.|+.+                      ..+.+||+.+.+  .+..+........++.+.+++++.|+.++      .|.
T Consensus       257 v~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~  336 (357)
T 2uvk_A          257 FAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSV  336 (357)
T ss_dssp             EECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEE
T ss_pred             EEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEE
Confidence            777632                      257789987643  33334333333345556678888888653      355


Q ss_pred             EEEcCCCcceEEE
Q 016224          337 VWFATDSGNLEVT  349 (393)
Q Consensus       337 iwd~~~~~~~~~~  349 (393)
                      ++++++.+..+..
T Consensus       337 ~l~~~~~~~~~~~  349 (357)
T 2uvk_A          337 LITVKDNKVTVQN  349 (357)
T ss_dssp             EEEC-CCSCEEEC
T ss_pred             EEEEcCcEeEeee
Confidence            5677766554443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.19  E-value=0.11  Score=46.09  Aligned_cols=216  Identities=12%  Similarity=0.071  Sum_probs=122.4

Q ss_pred             CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe-CCCcEEEEECCC----CeEEEEEec--CCce-EEEE
Q 016224          127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVWDCAS----GQCAGVINL--GGEV-GCMI  198 (393)
Q Consensus       127 ~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s-~dg~v~iwd~~~----~~~~~~~~~--~~~~-~~~~  198 (393)
                      ....|+..|+... +....+. .......++|++.++.|+.+. ..+.|..+++..    ......+..  ..+. ..+.
T Consensus         8 ~~~~I~~i~~~~~-~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd   85 (316)
T 1ijq_A            8 NRHEVRKMTLDRS-EYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD   85 (316)
T ss_dssp             CBSSEEEEETTSC-CCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             CCCeEEEEECCCc-ceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEe
Confidence            3456888898876 3333343 345678999998766665554 568999999876    222222321  1222 2222


Q ss_pred             eCCCEEE-EE-cCCeEEEEECCCCceeee-cCCCCcEEEEEEeCC--EEEEEeC-C-CcEEEEEeccCCccccCceee-c
Q 016224          199 SEGPWIF-IG-VTNFVKAWNTQTNTDLSL-SGPVGQVYAMAVGND--LLFAGTQ-D-GAILAWKFNVTTNCFEPAASL-K  270 (393)
Q Consensus       199 ~~~~~l~-~~-~~~~i~v~d~~~~~~~~~-~~~~~~v~~l~~~~~--~l~~~~~-d-g~I~vwd~~~~~~~~~~~~~~-~  270 (393)
                      ..+..|+ +. ..+.|.+++........+ .........++++|.  .|+.+.. . +.|..+++....     ...+ .
T Consensus        86 ~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-----~~~~~~  160 (316)
T 1ijq_A           86 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-----IYSLVT  160 (316)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-----EEEEEC
T ss_pred             ecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-----eEEEEE
Confidence            3344444 43 556899999876554432 334457789999874  4444443 3 678888775432     1111 1


Q ss_pred             CceeeEEEEEEc--CCEEE-EecCCCcEEEeeCCCcceeeEec-c--CccceEEEEEcCCE-EEEEeCCCcEEEEEcCCC
Q 016224          271 GHSLAVVSLVVG--ANKLY-SGSMDNSIRVWNLETLQCIQTLT-E--HTSVVMSLLCWDQF-LLSCSLDKTIKVWFATDS  343 (393)
Q Consensus       271 ~~~~~v~~l~~~--~~~l~-sg~~dg~i~iwd~~~~~~~~~~~-~--~~~~v~~l~~~~~~-l~s~s~dg~i~iwd~~~~  343 (393)
                      ..-.....++++  ++.|+ +-...+.|..+|+.. .....+. .  .......+++.+.. +++-...+.|..++..++
T Consensus       161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCC
Confidence            122234566665  45554 445667999999874 3233332 1  12234566666554 445556778999987666


Q ss_pred             cceEEEE
Q 016224          344 GNLEVTY  350 (393)
Q Consensus       344 ~~~~~~~  350 (393)
                      +....+.
T Consensus       240 ~~~~~i~  246 (316)
T 1ijq_A          240 SDVNLLA  246 (316)
T ss_dssp             CCCEEEE
T ss_pred             cceEEEe
Confidence            6555443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.19  E-value=0.042  Score=48.51  Aligned_cols=211  Identities=12%  Similarity=0.146  Sum_probs=107.8

Q ss_pred             CeEEEEECCCC-cEEEEEecCCcCCEEEEEecCCCCEEEEEeC----C-----CcEEEEECCCCeEEEEEecCC---ceE
Q 016224          129 KFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSK----D-----ETVRVWDCASGQCAGVINLGG---EVG  195 (393)
Q Consensus       129 g~i~vwd~~~~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~----d-----g~v~iwd~~~~~~~~~~~~~~---~~~  195 (393)
                      ..+.+||..+. ++.+..+......- +++.. ++.+++.|+.    +     ..+.+||..+.+-...-..+.   ...
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  116 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG  116 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred             ceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence            35788887765 11111111111111 12222 5566666665    2     468899988876433322221   123


Q ss_pred             EEEeCCCEEEEEc------CCeEEEEECCCCceeeecC---CCCcEEEEEEeCCEEEEEeCC-----CcEEEEEeccCCc
Q 016224          196 CMISEGPWIFIGV------TNFVKAWNTQTNTDLSLSG---PVGQVYAMAVGNDLLFAGTQD-----GAILAWKFNVTTN  261 (393)
Q Consensus       196 ~~~~~~~~l~~~~------~~~i~v~d~~~~~~~~~~~---~~~~v~~l~~~~~~l~~~~~d-----g~I~vwd~~~~~~  261 (393)
                      ....++++++.|.      ...+.+||+.+.+-..+..   .......+.+...+++.|+.+     ..+.+||+.+.. 
T Consensus       117 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-  195 (308)
T 1zgk_A          117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNE-  195 (308)
T ss_dssp             EEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE-
T ss_pred             EEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCe-
Confidence            3334666666542      2478899998876543322   112222333333366666654     458888876542 


Q ss_pred             cccCceeecCceeeEEEEEEcCCEEEEecCC-----CcEEEeeCCCcceee--EeccCccceEEEEEcCCEEEEEeCC--
Q 016224          262 CFEPAASLKGHSLAVVSLVVGANKLYSGSMD-----NSIRVWNLETLQCIQ--TLTEHTSVVMSLLCWDQFLLSCSLD--  332 (393)
Q Consensus       262 ~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~l~~~~~~l~s~s~d--  332 (393)
                       +..+..+........++..++.+++.|+.+     ..+.+||+.+.+-..  .+.........+...+++++.|+.+  
T Consensus       196 -W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~  274 (308)
T 1zgk_A          196 -WRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGH  274 (308)
T ss_dssp             -EEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred             -EeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCCC
Confidence             222222221122223344566677777654     568999998754322  2222222233444556777777754  


Q ss_pred             ---CcEEEEEcCCC
Q 016224          333 ---KTIKVWFATDS  343 (393)
Q Consensus       333 ---g~i~iwd~~~~  343 (393)
                         ..+.+||+.+.
T Consensus       275 ~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          275 TFLDSVECYDPDTD  288 (308)
T ss_dssp             CBCCEEEEEETTTT
T ss_pred             cccceEEEEcCCCC
Confidence               34777887653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.17  E-value=0.15  Score=47.43  Aligned_cols=143  Identities=9%  Similarity=0.055  Sum_probs=82.0

Q ss_pred             EEeeEec----CcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCC----c-EEEEECCCCe
Q 016224          113 LCRNWVQ----GNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE----T-VRVWDCASGQ  183 (393)
Q Consensus       113 ~c~~~~~----~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg----~-v~iwd~~~~~  183 (393)
                      ..++|.+    +.++.+...+.|+.+|..++ +.. .+.........|+|+++++ |+.+...+    . +...+...+.
T Consensus       142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g-~v~-~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ-YVD-IKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CEEEECTTTTTCEEEEECBTSCEEEEETTTT-EEE-EECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT
T ss_pred             ceEEEccccCCCEEEEEeCCCCEEEEECCCC-EEE-EeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe
Confidence            5677775    45556555589999998877 444 3444556789999999999 55554322    1 3333322211


Q ss_pred             E-EEEE-ecCCce-EEEEe-CCCEEEEE-cCCeEEEEECCCCce-eee--cCCCCcEEEEEEeCC---EEEEEeCCCcEE
Q 016224          184 C-AGVI-NLGGEV-GCMIS-EGPWIFIG-VTNFVKAWNTQTNTD-LSL--SGPVGQVYAMAVGND---LLFAGTQDGAIL  252 (393)
Q Consensus       184 ~-~~~~-~~~~~~-~~~~~-~~~~l~~~-~~~~i~v~d~~~~~~-~~~--~~~~~~v~~l~~~~~---~l~~~~~dg~I~  252 (393)
                      . ...+ ....+. ..+.+ ++.+.++. ..+.|+.++..++.. ..+  ......-..|+++++   ++++-...+.|.
T Consensus       219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~  298 (433)
T 4hw6_A          219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIY  298 (433)
T ss_dssp             CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEE
Confidence            1 0111 112221 22334 45555554 456899999987765 221  122223346999887   444555678899


Q ss_pred             EEEecc
Q 016224          253 AWKFNV  258 (393)
Q Consensus       253 vwd~~~  258 (393)
                      .+++..
T Consensus       299 ~~~~d~  304 (433)
T 4hw6_A          299 RVDYNR  304 (433)
T ss_dssp             EEEBCT
T ss_pred             EEeCCC
Confidence            988764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.13  E-value=0.012  Score=61.75  Aligned_cols=213  Identities=11%  Similarity=0.154  Sum_probs=128.1

Q ss_pred             CcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC-EEEEEeCCCc
Q 016224          172 ETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGA  250 (393)
Q Consensus       172 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~~dg~  250 (393)
                      .+|.|-|+..+..+...........+.+..++++.-...++.++|+++...+........|.-..|-.. .|+..+ +..
T Consensus        48 ~~vvIidl~~~~~~~rrpi~AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT-~~a  126 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT-DNA  126 (1630)
T ss_pred             ceEEEEECCCCCCcccccccchhhccCCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEc-CCe
Confidence            378888888776665555555556666777788777778999999999887755555667888888544 554443 567


Q ss_pred             EEEEEeccCCccccCceeecCc----eeeEEEEEEcC--CEEE-Ee------cCCCcEEEeeCCCcceeeEeccCccceE
Q 016224          251 ILAWKFNVTTNCFEPAASLKGH----SLAVVSLVVGA--NKLY-SG------SMDNSIRVWNLETLQCIQTLTEHTSVVM  317 (393)
Q Consensus       251 I~vwd~~~~~~~~~~~~~~~~~----~~~v~~l~~~~--~~l~-sg------~~dg~i~iwd~~~~~~~~~~~~~~~~v~  317 (393)
                      |+.|++....   .|.+.+..|    ...|.....+.  ++++ +|      ...|.+.+|..+. +.-+.+.+|.+...
T Consensus       127 VyHW~~~~~s---~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~  202 (1630)
T 1xi4_A          127 VYHWSMEGES---QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFA  202 (1630)
T ss_pred             EEEeccCCCC---ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhh
Confidence            9999996532   444444333    34455555543  3433 22      2458899999874 33466677776665


Q ss_pred             EEEEcC----CEEEE-EeC---CCcEEEEEcCCC---c-ce-----EEEEeec-CCccEEEEEeeeCCCCCcEEEEEeCC
Q 016224          318 SLLCWD----QFLLS-CSL---DKTIKVWFATDS---G-NL-----EVTYTHN-EEHGVLALCGMPDSEGKPVLLCSCND  379 (393)
Q Consensus       318 ~l~~~~----~~l~s-~s~---dg~i~iwd~~~~---~-~~-----~~~~~~~-~~~~v~~~~~~~~~~~~~~l~s~s~d  379 (393)
                      .+...+    ..|++ +..   .++++|-++...   . ..     ....... ...-..++..++...   ++..-+.-
T Consensus       203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g---~iy~itk~  279 (1630)
T 1xi4_A          203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD---VVFLITKY  279 (1630)
T ss_pred             eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC---EEEEEecC
Confidence            555542    12222 221   268888888543   1 10     0111110 011122333333322   77788889


Q ss_pred             CeEEEEeCCceee
Q 016224          380 NSVRFYDLPSVII  392 (393)
Q Consensus       380 g~I~iwd~~s~~l  392 (393)
                      |.|++||+.|+.+
T Consensus       280 G~~~~~d~~t~~~  292 (1630)
T 1xi4_A          280 GYIHLYDLETGTC  292 (1630)
T ss_pred             ceEEEEecccchh
Confidence            9999999999864

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.13  E-value=0.082  Score=55.76  Aligned_cols=212  Identities=8%  Similarity=0.108  Sum_probs=130.2

Q ss_pred             CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEE-eCCCEEE
Q 016224          127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI-SEGPWIF  205 (393)
Q Consensus       127 ~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~l~  205 (393)
                      ....|.|.|+.++....+.-..-.+.|    .+|..+.||-=. ..++.|+|+++.+.+..+.....+..+- -+...|+
T Consensus        46 ~~~~vvIidl~~~~~~~rrpi~AdsAI----MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~  120 (1630)
T 1xi4_A           46 EQAQVVIIDMNDPSNPIRRPISADSAI----MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA  120 (1630)
T ss_pred             CCceEEEEECCCCCCcccccccchhhc----cCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeE
Confidence            344888999887644433322223333    577777666544 6799999999999999999988877664 4667777


Q ss_pred             EEcCCeEEEEECCCCcee--eecCC----CCcEEEEEEeCC---EEEEEe------CCCcEEEEEeccCCccccCceeec
Q 016224          206 IGVTNFVKAWNTQTNTDL--SLSGP----VGQVYAMAVGND---LLFAGT------QDGAILAWKFNVTTNCFEPAASLK  270 (393)
Q Consensus       206 ~~~~~~i~v~d~~~~~~~--~~~~~----~~~v~~l~~~~~---~l~~~~------~dg~I~vwd~~~~~~~~~~~~~~~  270 (393)
                      .-.+..|..|++......  .+..|    ..+|..-..+++   .+++|-      -.|.+.+|......     .+.+.
T Consensus       121 lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-----sQ~ie  195 (1630)
T 1xi4_A          121 LVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-----SQPIE  195 (1630)
T ss_pred             EEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-----chhhh
Confidence            778899999999753322  22222    456777777776   333332      45788899877642     34556


Q ss_pred             CceeeEEEEEEcCC-----EEEEec---CCCcEEEeeCCCc---ce------eeEeccC---ccceEEEEEcC--CEEEE
Q 016224          271 GHSLAVVSLVVGAN-----KLYSGS---MDNSIRVWNLETL---QC------IQTLTEH---TSVVMSLLCWD--QFLLS  328 (393)
Q Consensus       271 ~~~~~v~~l~~~~~-----~l~sg~---~dg~i~iwd~~~~---~~------~~~~~~~---~~~v~~l~~~~--~~l~s  328 (393)
                      +|...-..+..+++     .+..+.   ..+.++|.++...   ..      +..+-..   ..--.++..+.  ..+..
T Consensus       196 gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~  275 (1630)
T 1xi4_A          196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL  275 (1630)
T ss_pred             HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEE
Confidence            66555544444322     222111   2368888888532   11      1111111   11223444453  46777


Q ss_pred             EeCCCcEEEEEcCCCcceEE
Q 016224          329 CSLDKTIKVWFATDSGNLEV  348 (393)
Q Consensus       329 ~s~dg~i~iwd~~~~~~~~~  348 (393)
                      .+.-|.|.+||+.++..+..
T Consensus       276 itk~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          276 ITKYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             EecCceEEEEecccchhhhh
Confidence            88899999999998876543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.08  E-value=0.1  Score=46.11  Aligned_cols=210  Identities=10%  Similarity=0.094  Sum_probs=106.6

Q ss_pred             eEEEEECCCCcEEE-EEecCC-cCCEEEEEecCCCCEEEEEeC----CC-------cEEEEECCCCeEEEEEecCC---c
Q 016224          130 FLHSWTVGDGFKLL-TQLEGH-QKVVSGITLPSGSDKLYSGSK----DE-------TVRVWDCASGQCAGVINLGG---E  193 (393)
Q Consensus       130 ~i~vwd~~~~~~~~-~~l~~h-~~~I~~i~~s~~~~~l~s~s~----dg-------~v~iwd~~~~~~~~~~~~~~---~  193 (393)
                      .+.+||..+. +-. ..+... ...-.++ ...++.+++.|+.    ++       .+.+||..+.+-...-..+.   .
T Consensus        25 ~~~~yd~~~~-~W~~~~~~~~~~r~~~~~-~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~  102 (318)
T 2woz_A           25 AAVAYDPMEN-ECYLTALAEQIPRNHSSI-VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL  102 (318)
T ss_dssp             EEEEEETTTT-EEEEEEECTTSCSSEEEE-ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred             ceEEECCCCC-ceecccCCccCCccceEE-EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence            4789998876 322 223221 1222233 3456777788873    12       27788888775443222221   1


Q ss_pred             eEEEEeCCCEEEEE-cC-------CeEEEEECCCCceeeecCCCCcE--EEEEEeCC-EEEEEeC------CCcEEEEEe
Q 016224          194 VGCMISEGPWIFIG-VT-------NFVKAWNTQTNTDLSLSGPVGQV--YAMAVGND-LLFAGTQ------DGAILAWKF  256 (393)
Q Consensus       194 ~~~~~~~~~~l~~~-~~-------~~i~v~d~~~~~~~~~~~~~~~v--~~l~~~~~-~l~~~~~------dg~I~vwd~  256 (393)
                      ......++.+++.| .+       +.+.+||+.+.+-..+.......  .+++...+ +++.|+.      -..+.+||+
T Consensus       103 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~  182 (318)
T 2woz_A          103 FGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNP  182 (318)
T ss_dssp             CEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEET
T ss_pred             cceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcC
Confidence            22333456665554 32       25888999887755433222111  12222344 5566653      235888887


Q ss_pred             ccCCccccCceeecCceeeEEEEEEcCCEEEEecCC-----CcEEEeeCCCcce--eeEeccCccceEEEEEcCCEEEEE
Q 016224          257 NVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD-----NSIRVWNLETLQC--IQTLTEHTSVVMSLLCWDQFLLSC  329 (393)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d-----g~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~l~s~  329 (393)
                      .+..  +..+..+........++..++.+++.|+.+     ..+.+||+.+.+-  +..+.........+.+.+.+++.|
T Consensus       183 ~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G  260 (318)
T 2woz_A          183 KKGD--WKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIG  260 (318)
T ss_dssp             TTTE--EEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEETTEEEEEC
T ss_pred             CCCE--EEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEECCEEEEEC
Confidence            7643  222222211111122344566667777643     3577899877543  222222222234445557777777


Q ss_pred             eCC--------------CcEEEEEcCCC
Q 016224          330 SLD--------------KTIKVWFATDS  343 (393)
Q Consensus       330 s~d--------------g~i~iwd~~~~  343 (393)
                      +.+              ..+.+||+.+.
T Consensus       261 G~~~~~~~~~~~~~~~~~~v~~yd~~~~  288 (318)
T 2woz_A          261 GFAMIQLESKEFAPTEVNDIWKYEDDKK  288 (318)
T ss_dssp             CBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred             CeeccCCCCceeccceeeeEEEEeCCCC
Confidence            654              34777887654

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=97.07  E-value=0.068  Score=46.65  Aligned_cols=219  Identities=16%  Similarity=0.093  Sum_probs=120.3

Q ss_pred             CCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE-EEecCCceEEEEeCCC-EEEEEcCCeEEEEECCCCcee-eecC
Q 016224          151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG-VINLGGEVGCMISEGP-WIFIGVTNFVKAWNTQTNTDL-SLSG  227 (393)
Q Consensus       151 ~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~-~l~~~~~~~i~v~d~~~~~~~-~~~~  227 (393)
                      ..|..|+..... .++. . ||.|..|-....-.+. .......+..+..... .++. .++.|..|-....-.+ ....
T Consensus        24 ~~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l-~~G~v~~wG~n~~Gqlg~P~~   99 (282)
T 3qhy_B           24 SGVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTTVPAE   99 (282)
T ss_dssp             SSCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG
T ss_pred             CCCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE-ECCEEEEeeCCCCCCCCCCcc
Confidence            357777765432 2333 4 8999999765421111 0011223444444333 3334 4888988876543322 1112


Q ss_pred             CCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceee
Q 016224          228 PVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQ  307 (393)
Q Consensus       228 ~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~  307 (393)
                      ....|..++...+..++-+ +|.|+.|=.........+    ......|..++....+.+.-. ||.|..|-....-.+.
T Consensus       100 ~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~----~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg  173 (282)
T 3qhy_B          100 ARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVP----AEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTT  173 (282)
T ss_dssp             GSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCC----GGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTS
T ss_pred             cCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCC----ccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCC
Confidence            2357889998888555556 999999976543221111    112345777777666544444 7999999765422221


Q ss_pred             EeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          308 TLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       308 ~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      .-..-...|..++.-..+.+.- .||.|..|-.....++..-.  .....+..++.-...    .++..  ||.|..|-.
T Consensus       174 ~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~--~~~~~v~~i~~G~~h----~~al~--~g~v~~wG~  244 (282)
T 3qhy_B          174 VPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPT--EALSGVSAIASGEWY----SLALK--NGKVIAWGS  244 (282)
T ss_dssp             CCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCG--GGGSSCCEEEECSSC----EEEEE--TTEEEEEST
T ss_pred             CceecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCc--ccCCCceEEEcCCCE----EEEEE--CCEEEEecC
Confidence            1111235678887776655545 69999999765544332111  111235555432221    23333  899999864


Q ss_pred             C
Q 016224          388 P  388 (393)
Q Consensus       388 ~  388 (393)
                      .
T Consensus       245 n  245 (282)
T 3qhy_B          245 S  245 (282)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.01  E-value=0.34  Score=48.57  Aligned_cols=227  Identities=16%  Similarity=0.143  Sum_probs=126.2

Q ss_pred             cceEEeeEecC-cEEEecCCCeEEEEECCCCcEEEEEe-cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 016224          110 TDILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQL-EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV  187 (393)
Q Consensus       110 ~~i~c~~~~~~-~~~~g~~dg~i~vwd~~~~~~~~~~l-~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~  187 (393)
                      ..|.|+.-... .+..|+.+| |..||-.+ ++..... ......|.+|....++ .|..|+.+| +..||..+.+....
T Consensus        22 n~V~~I~qD~~G~lWigT~~G-L~ryDG~~-~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~   97 (758)
T 3ott_A           22 SVVSCFLQDSEGLIWIGSNKG-LFSYDGYS-TQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQP   97 (758)
T ss_dssp             CCEEEEEECTTSCEEEEESSC-EEEECSSC-EEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCC
T ss_pred             ceEEEEEECCCCCEEEEECCC-ccccCCCc-eEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECc
Confidence            36888877655 466788877 45566322 1111000 1123568888877665 567777665 78999887654321


Q ss_pred             Ee-cCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeec-----CCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCC
Q 016224          188 IN-LGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLS-----GPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTT  260 (393)
Q Consensus       188 ~~-~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~-----~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~  260 (393)
                      .. ....+..+......|.++..+.+..|+..+++...+.     .....|.++....+ .|.+++.+ -|..++.....
T Consensus        98 ~~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~  176 (758)
T 3ott_A           98 ETDFPTDVRTMALQGDTLWLGALNGLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGK  176 (758)
T ss_dssp             SCCCCSCEEEEEEETTEEEEEETTEEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTE
T ss_pred             ccCCCceEEEEEecCCcEEEEcCCcceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCc
Confidence            00 1122433433334455555557889998877654331     12356888888755 56666655 47777765432


Q ss_pred             ccccCcee-ecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc-CCEEEEEeCCCcEE
Q 016224          261 NCFEPAAS-LKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-DQFLLSCSLDKTIK  336 (393)
Q Consensus       261 ~~~~~~~~-~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~dg~i~  336 (393)
                      ........ .......|.++..+  ++.|..|+. +-|..+|..+++...........|.++..+ ...|..|+. +-|.
T Consensus       177 ~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~  254 (758)
T 3ott_A          177 FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTD-NGLY  254 (758)
T ss_dssp             EEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEET-TEEE
T ss_pred             eEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEeC-Ccee
Confidence            10000000 00012347777776  456666664 458889987765432211123457777776 345555664 4588


Q ss_pred             EEEcCCC
Q 016224          337 VWFATDS  343 (393)
Q Consensus       337 iwd~~~~  343 (393)
                      +++..+.
T Consensus       255 ~~~~~~~  261 (758)
T 3ott_A          255 VYHNDTT  261 (758)
T ss_dssp             EECCTTS
T ss_pred             EEecCCC
Confidence            8887544

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.00  E-value=0.36  Score=48.60  Aligned_cols=213  Identities=10%  Similarity=0.023  Sum_probs=116.2

Q ss_pred             CCCcEEEEECCCCeEEEEEecCCceEEEE--eCCCEEE-EE-cCCeEEEEECCCC----c-eeeecCCCCcEEEEEEeCC
Q 016224          170 KDETVRVWDCASGQCAGVINLGGEVGCMI--SEGPWIF-IG-VTNFVKAWNTQTN----T-DLSLSGPVGQVYAMAVGND  240 (393)
Q Consensus       170 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~l~-~~-~~~~i~v~d~~~~----~-~~~~~~~~~~v~~l~~~~~  240 (393)
                      ....|+..++........+.....+..+.  .....|+ +. ..+.|+.+++...    . ...+.........|+++..
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~  481 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  481 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence            34578888887766555554444444433  2344444 44 4467888888753    1 2233334455667777643


Q ss_pred             ---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEec-C-CCcEEEeeCCCcceeeEeccCc
Q 016224          241 ---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGS-M-DNSIRVWNLETLQCIQTLTEHT  313 (393)
Q Consensus       241 ---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~-~-dg~i~iwd~~~~~~~~~~~~~~  313 (393)
                         ++++-...+.|.+.++.....    ...+.........|+++  ..+|+... . .+.|.+.++........+...-
T Consensus       482 ~~~LY~tD~~~~~I~v~~ldG~~~----~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l  557 (791)
T 3m0c_C          482 HSNIYWTDSVLGTVSVADTKGVKR----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI  557 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSE----EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSC
T ss_pred             CCcEEEEecCCCeEEEEeCCCCeE----EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCC
Confidence               666666788899998875421    11111222335566765  34555443 2 3789988887544333333333


Q ss_pred             cceEEEEEc--CCEEEEE-eCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          314 SVVMSLLCW--DQFLLSC-SLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       314 ~~v~~l~~~--~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      .....|+++  ...|+.+ .....|...++........+.....-....+++..  .  +.++++-...+.|...+..+|
T Consensus       558 ~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~--~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          558 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--E--DKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--T--TEEEEEETTTTEEEEEETTTC
T ss_pred             CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--C--CEEEEEECCCCEEEEEeCCCC
Confidence            456778877  4555544 45678999998644333333222222234455542  2  235555556678887776555

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.95  E-value=0.19  Score=44.54  Aligned_cols=210  Identities=12%  Similarity=0.029  Sum_probs=116.0

Q ss_pred             CcEEEEECCCCeEEEEEecCCceEEEE--eCCCEEE-EE-cCCeEEEEECCC----Ccee-eecCCCCcEEEEEEeC--C
Q 016224          172 ETVRVWDCASGQCAGVINLGGEVGCMI--SEGPWIF-IG-VTNFVKAWNTQT----NTDL-SLSGPVGQVYAMAVGN--D  240 (393)
Q Consensus       172 g~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~l~-~~-~~~~i~v~d~~~----~~~~-~~~~~~~~v~~l~~~~--~  240 (393)
                      ..|+..|+.+.+....+........+.  ..+..|+ +. ..+.|..+++..    .... .+.........+++++  .
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~   89 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence            468888988876666555444444333  3344444 44 456899999876    2222 2222334557788864  2


Q ss_pred             -EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecC-C-CcEEEeeCCCcceeeEe-ccCcc
Q 016224          241 -LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSM-D-NSIRVWNLETLQCIQTL-TEHTS  314 (393)
Q Consensus       241 -~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~-d-g~i~iwd~~~~~~~~~~-~~~~~  314 (393)
                       ++++-...+.|.++++.....    .............++++  +..|+.+.. . +.|...++. ++....+ ...-.
T Consensus        90 ~ly~~d~~~~~I~~~~~~g~~~----~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~  164 (316)
T 1ijq_A           90 NIYWTDSVLGTVSVADTKGVKR----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQ  164 (316)
T ss_dssp             EEEEEETTTTEEEEEETTSSSE----EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCS
T ss_pred             eEEEEECCCCEEEEEeCCCCce----EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCC
Confidence             555556778899998765321    11111112234566665  445444443 3 688888875 3333333 22234


Q ss_pred             ceEEEEEc--CCEEE-EEeCCCcEEEEEcCCCcceEEEEee-cCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          315 VVMSLLCW--DQFLL-SCSLDKTIKVWFATDSGNLEVTYTH-NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       315 ~v~~l~~~--~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      ....|+++  ++.|+ +-+..+.|..+|+.. .....+... ........++..    ++.++++-...+.|..++..++
T Consensus       165 ~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~----~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF----EDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE----TTEEEEEETTTTEEEEEETTTC
T ss_pred             CceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE----CCEEEEEECCCCeEEEEeCCCC
Confidence            45778887  45554 445567899999864 333333322 112234556552    2335666667788999887665


Q ss_pred             e
Q 016224          391 I  391 (393)
Q Consensus       391 ~  391 (393)
                      +
T Consensus       240 ~  240 (316)
T 1ijq_A          240 S  240 (316)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.93  E-value=0.18  Score=44.55  Aligned_cols=168  Identities=8%  Similarity=0.102  Sum_probs=86.5

Q ss_pred             cEEEEECCCCeEEEEEecC----C-ceEEEEeCCCEEEEEcC-----C-------eEEEEECCCCceeeecC---CCCcE
Q 016224          173 TVRVWDCASGQCAGVINLG----G-EVGCMISEGPWIFIGVT-----N-------FVKAWNTQTNTDLSLSG---PVGQV  232 (393)
Q Consensus       173 ~v~iwd~~~~~~~~~~~~~----~-~~~~~~~~~~~l~~~~~-----~-------~i~v~d~~~~~~~~~~~---~~~~v  232 (393)
                      .+.+||..+.+-.. ....    . .......++.+++.|..     +       .+..||..+.+-..+..   .....
T Consensus        25 ~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~  103 (318)
T 2woz_A           25 AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF  103 (318)
T ss_dssp             EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred             ceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence            47889998877544 2221    1 12233346677666641     1       27788988877553322   11222


Q ss_pred             EEEEEeCCEEEEEeCC-------CcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecC------CCcEEEee
Q 016224          233 YAMAVGNDLLFAGTQD-------GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSM------DNSIRVWN  299 (393)
Q Consensus       233 ~~l~~~~~~l~~~~~d-------g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~------dg~i~iwd  299 (393)
                      ....+...+++.|+.+       ..+.+||+.+..  ++.+..+......-.++..++.+++.|+.      -..+.+||
T Consensus       104 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd  181 (318)
T 2woz_A          104 GLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAK--WSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYN  181 (318)
T ss_dssp             EEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTE--EEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEE
T ss_pred             ceEEECCEEEEEcCccCCCCcccceEEEEeCCCCC--EeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEc
Confidence            2333333466666653       246677766542  22222222111111233356666666664      24689999


Q ss_pred             CCCcceee--EeccCccceEEEEEcCCEEEEEeCC-----CcEEEEEcCCC
Q 016224          300 LETLQCIQ--TLTEHTSVVMSLLCWDQFLLSCSLD-----KTIKVWFATDS  343 (393)
Q Consensus       300 ~~~~~~~~--~~~~~~~~v~~l~~~~~~l~s~s~d-----g~i~iwd~~~~  343 (393)
                      +.+.+-..  .+........++.+.+.+++.|+.+     ..+.+||+.+.
T Consensus       182 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          182 PKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             TTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             CCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCC
Confidence            98754322  2222222223444567777777654     34678888654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.84  E-value=0.24  Score=44.12  Aligned_cols=225  Identities=9%  Similarity=0.015  Sum_probs=117.6

Q ss_pred             ceEEeeEecCcEEEecCCCeEEEEECCCC--cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 016224          111 DILCRNWVQGNCMYGEKCKFLHSWTVGDG--FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVI  188 (393)
Q Consensus       111 ~i~c~~~~~~~~~~g~~dg~i~vwd~~~~--~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~  188 (393)
                      .+..+.+.++..+.++..+.|+. ..+.+  ++.+.....+...+..|.+.+++..++.+ .+|.|.. ..+.++.-...
T Consensus        81 ~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~  157 (327)
T 2xbg_A           81 RFNSVSFQGNEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQAL  157 (327)
T ss_dssp             EEEEEEEETTEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEE
T ss_pred             cEEEEEecCCeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEe
Confidence            56677777766666666665544 23333  23322222244567888887666655554 4565432 22234332222


Q ss_pred             ec--CCceEEE--EeCCCEEEEEcCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCc
Q 016224          189 NL--GGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTN  261 (393)
Q Consensus       189 ~~--~~~~~~~--~~~~~~l~~~~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~  261 (393)
                      ..  ...+..+  .+++.+++++..+.+..-.-..+...  ........+..+.+.++ .+++++.+|.+++.+...+ .
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G-~  236 (327)
T 2xbg_A          158 VQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS-E  236 (327)
T ss_dssp             ECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE-E
T ss_pred             ecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCC-C
Confidence            22  1223222  24677888887776554432212221  12234567888888776 6666677888777642211 1


Q ss_pred             cccCceee-cCceeeEEEEEEc-CCEEEEecCCCcEEEeeCCCcceeeEec---cCccceEEEEEc-CCEEEEEeCCCcE
Q 016224          262 CFEPAASL-KGHSLAVVSLVVG-ANKLYSGSMDNSIRVWNLETLQCIQTLT---EHTSVVMSLLCW-DQFLLSCSLDKTI  335 (393)
Q Consensus       262 ~~~~~~~~-~~~~~~v~~l~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~l~~~-~~~l~s~s~dg~i  335 (393)
                      .+..+... ..+...+..+.+. +..++.++.++.| ++....++.-..+.   .....+.++.+. +..+++++.+|.|
T Consensus       237 tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i  315 (327)
T 2xbg_A          237 NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGIL  315 (327)
T ss_dssp             EECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEE
T ss_pred             eeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceE
Confidence            11211111 0122346777775 3344444557766 34444444333333   223456777774 6677888889987


Q ss_pred             EEEEc
Q 016224          336 KVWFA  340 (393)
Q Consensus       336 ~iwd~  340 (393)
                      .-++-
T Consensus       316 ~~~~~  320 (327)
T 2xbg_A          316 LRYVT  320 (327)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            76653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.81  E-value=0.25  Score=43.84  Aligned_cols=188  Identities=10%  Similarity=0.051  Sum_probs=110.3

Q ss_pred             EEeeEec--CcEEEec-CCCeEEEEECCCCcEEEEEecC----Cc--CCEEEEEe---cCCCCEEEEEe-----------
Q 016224          113 LCRNWVQ--GNCMYGE-KCKFLHSWTVGDGFKLLTQLEG----HQ--KVVSGITL---PSGSDKLYSGS-----------  169 (393)
Q Consensus       113 ~c~~~~~--~~~~~g~-~dg~i~vwd~~~~~~~~~~l~~----h~--~~I~~i~~---s~~~~~l~s~s-----------  169 (393)
                      -|..|..  +.++.++ ..+.|..|+...+......+.+    ..  ..+..|.|   .++++++++..           
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            4677875  4555666 6899999998755222223332    11  14689999   68877776543           


Q ss_pred             --CCCcEEEEECC---CCeEEEEEecCC--------------ceEEEE--eCCCEEEEE-cC-CeEEEEECCCCceeee-
Q 016224          170 --KDETVRVWDCA---SGQCAGVINLGG--------------EVGCMI--SEGPWIFIG-VT-NFVKAWNTQTNTDLSL-  225 (393)
Q Consensus       170 --~dg~v~iwd~~---~~~~~~~~~~~~--------------~~~~~~--~~~~~l~~~-~~-~~i~v~d~~~~~~~~~-  225 (393)
                        .+..|..+|+.   +++.+....+..              ....+.  .+|...+++ .. +.|...+........+ 
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~  175 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFA  175 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeee
Confidence              26789999999   888777766421              122222  466666644 55 6666666665433221 


Q ss_pred             -cC----CCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCcee-------ecCceeeEEEEEEcCCE-EEEec
Q 016224          226 -SG----PVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAAS-------LKGHSLAVVSLVVGANK-LYSGS  290 (393)
Q Consensus       226 -~~----~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~-------~~~~~~~v~~l~~~~~~-l~sg~  290 (393)
                       ..    .....+.|+++|+  +|++....|.|..+|+......  .+..       .......+.....+++. +++..
T Consensus       176 ~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~--~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~  253 (334)
T 2p9w_A          176 WESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW--PEPVKINGDFGTLSGTEKIVTVPVGNESVLVGAR  253 (334)
T ss_dssp             ECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC--CEECEESSCCCCCTTEEEEEEEEETTEEEEEEEE
T ss_pred             ecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce--eecccccCCcccccCcccccccccCCEEEEEEcC
Confidence             11    1123568999987  6666666999999998843210  1111       11122333344456776 55555


Q ss_pred             CCCcEEEeeCCC
Q 016224          291 MDNSIRVWNLET  302 (393)
Q Consensus       291 ~dg~i~iwd~~~  302 (393)
                      ..+.+.+.+...
T Consensus       254 ~~~~~~l~S~Dg  265 (334)
T 2p9w_A          254 APYAISFRSWDN  265 (334)
T ss_dssp             TTEEEEEECSST
T ss_pred             CCCEEEEECCCC
Confidence            667777766544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.78  E-value=0.32  Score=44.72  Aligned_cols=212  Identities=10%  Similarity=0.004  Sum_probs=115.9

Q ss_pred             CcEEEEECCCCeEEEEEecCCceEEEE--eCCCEEE-EE-cCCeEEEEECCCC----cee-eecCCCCcEEEEEEeC--C
Q 016224          172 ETVRVWDCASGQCAGVINLGGEVGCMI--SEGPWIF-IG-VTNFVKAWNTQTN----TDL-SLSGPVGQVYAMAVGN--D  240 (393)
Q Consensus       172 g~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~l~-~~-~~~~i~v~d~~~~----~~~-~~~~~~~~v~~l~~~~--~  240 (393)
                      ..|+..++........+.....+..+.  .....|+ +. ..+.|+.+++...    ... ...........++++.  .
T Consensus        92 ~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~  171 (400)
T 3p5b_L           92 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS  171 (400)
T ss_dssp             TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTT
T ss_pred             ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCC
Confidence            567777777665554444434443333  2344444 44 4568888887652    122 3333455677888875  2


Q ss_pred             -EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEec--CCCcEEEeeCCCcceeeEeccCccc
Q 016224          241 -LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGS--MDNSIRVWNLETLQCIQTLTEHTSV  315 (393)
Q Consensus       241 -~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~  315 (393)
                       ++++-...+.|.+.++.....    ...+.........|+++  +.+|+...  ..+.|...++........+...-..
T Consensus       172 ~lY~~d~~~~~I~~~~~~g~~~----~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~  247 (400)
T 3p5b_L          172 NIYWTDSVLGTVSVADTKGVKR----KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW  247 (400)
T ss_dssp             EEEEEETTTTEEEEECTTTCSE----EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSC
T ss_pred             ceEEEECCCCeEEEEeCCCCce----EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCc
Confidence             555666678888888765421    11122222234566665  34554443  2478998988643333333333345


Q ss_pred             eEEEEEc--CCEEEEE-eCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          316 VMSLLCW--DQFLLSC-SLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       316 v~~l~~~--~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      -..|+++  +..|+.+ .....|..+|+....................++.  +  ++.++++-...+.|..++..+|+
T Consensus       248 P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~--~~~lywtd~~~~~V~~~~~~~G~  322 (400)
T 3p5b_L          248 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--F--EDKVFWTDIINEAIFSANRLTGS  322 (400)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--E--TTEEEEEESSSCSEEEEESSSCC
T ss_pred             eEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--e--CCEEEEecCCCCeEEEEEcCCCC
Confidence            6778887  4555544 4567899999864333222222112223445554  2  22366666677889888866653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.77  E-value=0.26  Score=43.68  Aligned_cols=197  Identities=9%  Similarity=0.052  Sum_probs=113.8

Q ss_pred             ceEEeeEec--CcEEE-ecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCC-EEEEEeCCCcEEEEECCCCeEEE
Q 016224          111 DILCRNWVQ--GNCMY-GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSD-KLYSGSKDETVRVWDCASGQCAG  186 (393)
Q Consensus       111 ~i~c~~~~~--~~~~~-g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~  186 (393)
                      ....+.|..  +.++. -...+.|+.++...+......+...-.....+++.+.+. +.++-...+.|.+++++......
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  115 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  115 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence            456778874  34443 445678999988755211111222223456788887544 44555567899999987543332


Q ss_pred             EEe-cCCceE--EEEeCCCEEEEEc---CCeEEEEECCCCceeee-cCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEe
Q 016224          187 VIN-LGGEVG--CMISEGPWIFIGV---TNFVKAWNTQTNTDLSL-SGPVGQVYAMAVGND---LLFAGTQDGAILAWKF  256 (393)
Q Consensus       187 ~~~-~~~~~~--~~~~~~~~l~~~~---~~~i~v~d~~~~~~~~~-~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~  256 (393)
                      .+. ......  .+.+.+..++.+.   .+.|...++.......+ .........|+++++   ++++=+..+.|..+|+
T Consensus       116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~  195 (318)
T 3sov_A          116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL  195 (318)
T ss_dssp             EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence            222 112222  2334445555442   46888888875443322 333456789999974   4455556788999998


Q ss_pred             ccCCccccCceeecCceeeEEEEEEcCC-EEEEecCCCcEEEeeCCCcceeeEecc
Q 016224          257 NVTTNCFEPAASLKGHSLAVVSLVVGAN-KLYSGSMDNSIRVWNLETLQCIQTLTE  311 (393)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~  311 (393)
                      .....  +  ............++++++ .+++-...+.|..+|..+++.+..+..
T Consensus       196 dG~~~--~--~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~  247 (318)
T 3sov_A          196 DGTNR--Q--AVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHS  247 (318)
T ss_dssp             TSCSC--E--EEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             CCCce--E--EEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence            75321  1  111212233455566655 455666678999999988877666543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.75  E-value=0.022  Score=51.00  Aligned_cols=100  Identities=11%  Similarity=0.054  Sum_probs=66.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEecC--CceEEEE-e----CCCEEEE--EcCCeEEEEECCCCcee-eecC----C
Q 016224          163 DKLYSGSKDETVRVWDCASGQCAGVINLG--GEVGCMI-S----EGPWIFI--GVTNFVKAWNTQTNTDL-SLSG----P  228 (393)
Q Consensus       163 ~~l~s~s~dg~v~iwd~~~~~~~~~~~~~--~~~~~~~-~----~~~~l~~--~~~~~i~v~d~~~~~~~-~~~~----~  228 (393)
                      .+++.++.||.|.-.|..+|+....++..  .+..... +    ++..++.  ..||.|..++..++... .+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47899999999999999999999999876  2222211 1    2234444  36899999998887543 1110    1


Q ss_pred             CCcEEE---EEE-------eCCEEEEEeCCCcEEEEEeccCCcc
Q 016224          229 VGQVYA---MAV-------GNDLLFAGTQDGAILAWKFNVTTNC  262 (393)
Q Consensus       229 ~~~v~~---l~~-------~~~~l~~~~~dg~I~vwd~~~~~~~  262 (393)
                      ..++..   ..+       ..+.+++|+.+|.+...|+.++...
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~  134 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEII  134 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEE
Confidence            122221   001       3348899999999999999988543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.73  E-value=0.37  Score=44.80  Aligned_cols=231  Identities=10%  Similarity=0.004  Sum_probs=119.2

Q ss_pred             CEEEEEecCC--CCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEE--EEeCCCEEEEEcCC-----eEEEEECCCCce
Q 016224          152 VVSGITLPSG--SDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC--MISEGPWIFIGVTN-----FVKAWNTQTNTD  222 (393)
Q Consensus       152 ~I~~i~~s~~--~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~-----~i~v~d~~~~~~  222 (393)
                      ....|+|+|+  ...|+.+...+.|+.+|..+++.............  +.+++.++++...+     .+...+......
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~  219 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT  219 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence            4568999984  45666665558999999988876655443333333  33567755554321     233333222211


Q ss_pred             e-eecCCCCcEEEEEEeC-C--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCE-EEEecCCCcE
Q 016224          223 L-SLSGPVGQVYAMAVGN-D--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANK-LYSGSMDNSI  295 (393)
Q Consensus       223 ~-~~~~~~~~v~~l~~~~-~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~-l~sg~~dg~i  295 (393)
                      . ...........+++++ +  ++++-..++.|+.+|..++... ..+..... ...-..++++  +++ +++-...+.|
T Consensus       220 ~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~-~~~~~~~~-~~~~~~ia~dpdG~~LYvad~~~~~I  297 (433)
T 4hw6_A          220 ERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT-EEEVMMDT-KGSNFHIVWHPTGDWAYIIYNGKHCI  297 (433)
T ss_dssp             CEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE-EEEEECSC-CSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred             ccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE-EEEeccCC-CCCcccEEEeCCCCEEEEEeCCCCEE
Confidence            0 1111223345677777 3  4444446678888887644210 00111111 1111235554  664 4555567889


Q ss_pred             EEeeCC--Ccce--eeEeccC---------------ccceEEEEE---------c--CCEEEEEeCCCcEEEEEcCCCcc
Q 016224          296 RVWNLE--TLQC--IQTLTEH---------------TSVVMSLLC---------W--DQFLLSCSLDKTIKVWFATDSGN  345 (393)
Q Consensus       296 ~iwd~~--~~~~--~~~~~~~---------------~~~v~~l~~---------~--~~~l~s~s~dg~i~iwd~~~~~~  345 (393)
                      +.++..  +++.  ...+.+.               -..-..+++         +  +.++++-.....|+.++. ++ .
T Consensus       298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G-~  375 (433)
T 4hw6_A          298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG-R  375 (433)
T ss_dssp             EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS-E
T ss_pred             EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC-C
Confidence            997765  3321  1222111               112356777         4  334555556678998875 33 3


Q ss_pred             eEEEEeecC----------------CccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          346 LEVTYTHNE----------------EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       346 ~~~~~~~~~----------------~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      +..+.....                -.....+++.|.  ++.++++=...+.|+.++++
T Consensus       376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~--~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMK--RKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETT--TTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECC--CCEEEEEeCCCCEEEEEecC
Confidence            444433211                122556777632  33355555567788888765

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.67  E-value=0.051  Score=54.64  Aligned_cols=184  Identities=11%  Similarity=0.058  Sum_probs=94.6

Q ss_pred             EEE-eCCCEEEEEc--CC----eEEEEECCCC-ceeeecCCCCcEEEEEEeCC--EEEEEeCC-----CcEEEEEeccCC
Q 016224          196 CMI-SEGPWIFIGV--TN----FVKAWNTQTN-TDLSLSGPVGQVYAMAVGND--LLFAGTQD-----GAILAWKFNVTT  260 (393)
Q Consensus       196 ~~~-~~~~~l~~~~--~~----~i~v~d~~~~-~~~~~~~~~~~v~~l~~~~~--~l~~~~~d-----g~I~vwd~~~~~  260 (393)
                      .+. +++++|+.+.  +|    .|+++|+.++ +.+.. ........+.|+++  .|+....+     ..|+++++.+..
T Consensus       180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~  258 (751)
T 2xe4_A          180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQ  258 (751)
T ss_dssp             EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCG
T ss_pred             EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCc
Confidence            455 6888777542  22    5999999998 63210 00111346788887  45544444     257777776543


Q ss_pred             ccccCceeecCceeeEEEEEE--cCCEEEEec---CCCcEEEeeCCCcc-ee--eEe-ccCccceEEEEEc-CCEEEEEe
Q 016224          261 NCFEPAASLKGHSLAVVSLVV--GANKLYSGS---MDNSIRVWNLETLQ-CI--QTL-TEHTSVVMSLLCW-DQFLLSCS  330 (393)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~---~dg~i~iwd~~~~~-~~--~~~-~~~~~~v~~l~~~-~~~l~s~s  330 (393)
                      ..-..+.... .......+.+  ++++|+..+   ....|.++|+.++. ..  ..+ ........++.|. ++.|+..+
T Consensus       259 ~~~~lv~~~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t  337 (751)
T 2xe4_A          259 SEDVCLYEEH-NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILT  337 (751)
T ss_dssp             GGCEEEEECC-CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEE
T ss_pred             hhcEEEEecC-CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEe
Confidence            1111111111 1223344455  466665444   34578889998752 12  333 3344556677643 66554443


Q ss_pred             -CC----CcEEEEEcCCCcceEE-EEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEE
Q 016224          331 -LD----KTIKVWFATDSGNLEV-TYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFY  385 (393)
Q Consensus       331 -~d----g~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iw  385 (393)
                       .+    ..|..+|+.+...... +..+.....+..+.+  +  ++.++++...++..+||
T Consensus       338 ~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~--~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          338 NEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--R--SNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             CTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--C--SSEEEEEEEETTEEEEE
T ss_pred             CCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--E--CCEEEEEEEeCCEEEEE
Confidence             33    2566667654233333 344433333444443  3  33467777778865444

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.58  E-value=0.47  Score=44.07  Aligned_cols=229  Identities=9%  Similarity=0.046  Sum_probs=120.5

Q ss_pred             CEEEEEecC-CCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEE--EeCCCEEEEEcC-----C-eEEEEECCCCce
Q 016224          152 VVSGITLPS-GSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIGVT-----N-FVKAWNTQTNTD  222 (393)
Q Consensus       152 ~I~~i~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-----~-~i~v~d~~~~~~  222 (393)
                      ....|+++| ++..|+.+...+.|+.+|+.+++.............+  .++++.|++...     . .+..++......
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~  217 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK  217 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence            456889998 4666777766688999999887765555433333333  356775555422     1 344444332211


Q ss_pred             --eeecCCCCcEEEEEEeC-C--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCE-EEEecCCCc
Q 016224          223 --LSLSGPVGQVYAMAVGN-D--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANK-LYSGSMDNS  294 (393)
Q Consensus       223 --~~~~~~~~~v~~l~~~~-~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~-l~sg~~dg~  294 (393)
                        ..+. .......+++++ +  ++++-..++.|..++......  ..+..... ......++++  +++ +++-...+.
T Consensus       218 ~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~--~~~~~~~~-~~~P~gia~~pdG~~lyv~d~~~~~  293 (430)
T 3tc9_A          218 VITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET--TPLFTIQD-SGWEFHIQFHPSGNYAYIVVVNQHY  293 (430)
T ss_dssp             SEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE--EEEEECSS-SSCCEEEEECTTSSEEEEEETTTTE
T ss_pred             eeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE--EEEEEcCC-CCcceeEEEcCCCCEEEEEECCCCE
Confidence              1111 123456777888 4  555555678899998875421  01111111 1223455654  664 555556788


Q ss_pred             EEEeeCCC--cce--eeEeccC----------------ccceEEEEEc----------CCEEEEEeCCCcEEEEEcCCCc
Q 016224          295 IRVWNLET--LQC--IQTLTEH----------------TSVVMSLLCW----------DQFLLSCSLDKTIKVWFATDSG  344 (393)
Q Consensus       295 i~iwd~~~--~~~--~~~~~~~----------------~~~v~~l~~~----------~~~l~s~s~dg~i~iwd~~~~~  344 (393)
                      |..++...  ++.  +..+.+.                ..+--.+...          +.+.++-.....|+.++. ++ 
T Consensus       294 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G-  371 (430)
T 3tc9_A          294 ILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG-  371 (430)
T ss_dssp             EEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS-
T ss_pred             EEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC-
Confidence            99987652  221  2222211                0111134432          234444445677888873 33 


Q ss_pred             ceEEEEeec-----C-----------CccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          345 NLEVTYTHN-----E-----------EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       345 ~~~~~~~~~-----~-----------~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      .+..+....     .           -.....+++.++  ++.++++-...+.|+.++++
T Consensus       372 ~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~--~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          372 RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEE--RECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETT--TTEEEEEEGGGTEEEEEEEC
T ss_pred             cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECC--CCEEEEEECCCCeEEEEccC
Confidence            344433320     0           113567777663  23355555567788888764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.53  E-value=0.0068  Score=60.42  Aligned_cols=221  Identities=10%  Similarity=0.035  Sum_probs=117.1

Q ss_pred             EEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe-CCCcEEEEECCC----CeEEEEEec--CCce-
Q 016224          123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVWDCAS----GQCAGVINL--GGEV-  194 (393)
Q Consensus       123 ~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s-~dg~v~iwd~~~----~~~~~~~~~--~~~~-  194 (393)
                      ++-+..+.|++.++... +....+. ....+..|+|++.+..|+.+. ..+.|+.+++..    ......+..  ..+. 
T Consensus       380 ll~~~~~~I~~id~~~~-~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~g  457 (699)
T 1n7d_A          380 LFFTNRHEVRKMTLDRS-EYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  457 (699)
T ss_dssp             BCCCCTTC-CEECTTSC-CEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCC
T ss_pred             EEecCccceEEEeCCCC-cceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcce
Confidence            33344567788887765 3433333 234566899998777776654 457899999875    222211111  1111 


Q ss_pred             EEEE-eCCCEEEEE-cCCeEEEEECCCCceeeecC-CCCcEEEEEEeCC--EEEEEe-C-CCcEEEEEeccCCccccCce
Q 016224          195 GCMI-SEGPWIFIG-VTNFVKAWNTQTNTDLSLSG-PVGQVYAMAVGND--LLFAGT-Q-DGAILAWKFNVTTNCFEPAA  267 (393)
Q Consensus       195 ~~~~-~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~-~~~~v~~l~~~~~--~l~~~~-~-dg~I~vwd~~~~~~~~~~~~  267 (393)
                      ..+. ..+.++++. ..+.|.++++.......+.. .......|++++.  .|+.+. . .+.|.++++.....  +  .
T Consensus       458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--~--~  533 (699)
T 1n7d_A          458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--Y--S  533 (699)
T ss_dssp             EECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--C--E
T ss_pred             EEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--e--E
Confidence            1222 233444443 45689999987765543332 2345677888764  444333 2 26787777654321  1  1


Q ss_pred             eecCceeeEEEEEEc--C-CEEEEecCCCcEEEeeCCCcceeeEec--cCccceEEEEEcCCE-EEEEeCCCcEEEEEcC
Q 016224          268 SLKGHSLAVVSLVVG--A-NKLYSGSMDNSIRVWNLETLQCIQTLT--EHTSVVMSLLCWDQF-LLSCSLDKTIKVWFAT  341 (393)
Q Consensus       268 ~~~~~~~~v~~l~~~--~-~~l~sg~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~-l~s~s~dg~i~iwd~~  341 (393)
                      .....-.....|+++  + .++++-+..+.|..+|+........+.  ........|++.++. +++....+.|..++..
T Consensus       534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETT
T ss_pred             EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEcc
Confidence            111111223445665  3 355555667889999986433222222  111223455556554 4455566889999876


Q ss_pred             CCcceEEE
Q 016224          342 DSGNLEVT  349 (393)
Q Consensus       342 ~~~~~~~~  349 (393)
                      +++.+..+
T Consensus       614 ~G~~~~~i  621 (699)
T 1n7d_A          614 TGSDVNLL  621 (699)
T ss_dssp             TEEEEECC
T ss_pred             CCCceEEe
Confidence            66544433

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.36  E-value=0.86  Score=44.57  Aligned_cols=217  Identities=12%  Similarity=0.076  Sum_probs=128.0

Q ss_pred             cCCCeEEEEECCCCcEEEEEec-CCcCCEEEEEecCCCCEEEEE-eCCCcEEEEECCCCeEEEEEecC--Cce-EEEEeC
Q 016224          126 EKCKFLHSWTVGDGFKLLTQLE-GHQKVVSGITLPSGSDKLYSG-SKDETVRVWDCASGQCAGVINLG--GEV-GCMISE  200 (393)
Q Consensus       126 ~~dg~i~vwd~~~~~~~~~~l~-~h~~~I~~i~~s~~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~--~~~-~~~~~~  200 (393)
                      +....|+..++++. .....+. ..-..+..|+|++.+..|+-+ ..++.|..++++.......+...  .+. .++...
T Consensus        12 s~~~~I~~i~l~~~-~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~   90 (628)
T 4a0p_A           12 SRRADIRRISLETN-NNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWL   90 (628)
T ss_dssp             EETTEEEEEESSCT-TCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT
T ss_pred             EeCCcEEEEECCCC-CcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeC
Confidence            45677888888765 2222222 233568899999876666655 45788999998765444444322  222 222234


Q ss_pred             CCEE-EEE-cCCeEEEEECCCCceeee-cCCCCcEEEEEEeCC--EEEEEeC--CCcEEEEEeccCCccccCceeecCce
Q 016224          201 GPWI-FIG-VTNFVKAWNTQTNTDLSL-SGPVGQVYAMAVGND--LLFAGTQ--DGAILAWKFNVTTNCFEPAASLKGHS  273 (393)
Q Consensus       201 ~~~l-~~~-~~~~i~v~d~~~~~~~~~-~~~~~~v~~l~~~~~--~l~~~~~--dg~I~vwd~~~~~~~~~~~~~~~~~~  273 (393)
                      +..| ++. ..+.|.+.++.......+ .........|+++|.  .|+....  .+.|...++.....     ..+...-
T Consensus        91 ~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-----~~l~~~~  165 (628)
T 4a0p_A           91 GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-----TTLVPNV  165 (628)
T ss_dssp             TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-----EEEECSC
T ss_pred             CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-----EEEECCC
Confidence            4444 444 456899999876654333 345567889999974  5555442  56777777665421     1111222


Q ss_pred             eeEEEEEEc--CCEEE-EecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCCEEEEEe-CCCcEEEEEcCCCcceEEE
Q 016224          274 LAVVSLVVG--ANKLY-SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCS-LDKTIKVWFATDSGNLEVT  349 (393)
Q Consensus       274 ~~v~~l~~~--~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~  349 (393)
                      .....|+++  ++.|+ +-...+.|..+|+..... ..+.........+++.+..|+... ..+.|...|..+++....+
T Consensus       166 ~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l  244 (628)
T 4a0p_A          166 GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTII  244 (628)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEE
Confidence            344566665  45554 445667899999875433 333333334457777766555544 4788988887666554443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.23  E-value=1  Score=44.05  Aligned_cols=216  Identities=13%  Similarity=0.078  Sum_probs=113.4

Q ss_pred             CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC-CCcEEEEECCCCeE-EEEEecC-CceEEEE--eCC
Q 016224          127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDCASGQC-AGVINLG-GEVGCMI--SEG  201 (393)
Q Consensus       127 ~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~-dg~v~iwd~~~~~~-~~~~~~~-~~~~~~~--~~~  201 (393)
                      ....|++.++.........+...-.....|+|++.+..|+-+.. .+.|..++++.... ...+... .....+.  ..+
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~   95 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   95 (619)
T ss_dssp             CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred             ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence            34567777876541122222233456789999987777766554 57888898875532 2223222 2233332  334


Q ss_pred             CEEEE-E-cCCeEEEEECCCCceeee-cCCCCcEEEEEEeCC--EEEEEeC--CCcEEEEEeccCCccccCceeecCcee
Q 016224          202 PWIFI-G-VTNFVKAWNTQTNTDLSL-SGPVGQVYAMAVGND--LLFAGTQ--DGAILAWKFNVTTNCFEPAASLKGHSL  274 (393)
Q Consensus       202 ~~l~~-~-~~~~i~v~d~~~~~~~~~-~~~~~~v~~l~~~~~--~l~~~~~--dg~I~vwd~~~~~~~~~~~~~~~~~~~  274 (393)
                      ..|+. . ..+.|.+.++.......+ .........|+++|.  .|+....  .+.|...++.....    .......-.
T Consensus        96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~----~~l~~~~~~  171 (619)
T 3s94_A           96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR----FIIINSEIY  171 (619)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EEEECSSCS
T ss_pred             CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce----EEEEeCCCC
Confidence            54444 4 456999999987654433 244556778999875  5554443  45666666654321    111111223


Q ss_pred             eEEEEEEc--CCEEE-EecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCCEEEEE-eCCCcEEEEEcCCCcce
Q 016224          275 AVVSLVVG--ANKLY-SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSC-SLDKTIKVWFATDSGNL  346 (393)
Q Consensus       275 ~v~~l~~~--~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~-s~dg~i~iwd~~~~~~~  346 (393)
                      ....|+++  .+.|+ +-...+.|..+|+..................|++.++.|+.+ ...+.|...|..+++..
T Consensus       172 ~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          172 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             SEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEEEESSSCCCC
T ss_pred             CCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCccc
Confidence            34566665  44544 445567899999875333222221222224666676555544 45678888888766543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.15  E-value=0.021  Score=56.91  Aligned_cols=212  Identities=11%  Similarity=0.019  Sum_probs=107.1

Q ss_pred             CCcEEEEECCCCeEEEEEecCCce--EEEEeCCCEEEEE--cCCeEEEEECCC----Ccee-eecCCCCcEEEEEEeC--
Q 016224          171 DETVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIG--VTNFVKAWNTQT----NTDL-SLSGPVGQVYAMAVGN--  239 (393)
Q Consensus       171 dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~--~~~~i~v~d~~~----~~~~-~~~~~~~~v~~l~~~~--  239 (393)
                      ...|++.++.+.+....+.....+  ..+......|+..  ..+.|+.+++..    .... .+.........|++..  
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~  464 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  464 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence            357788888776554443322222  2233445555554  456888888875    2222 2212223345667653  


Q ss_pred             C-EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEec-C-CCcEEEeeCCCcceeeEe-ccCc
Q 016224          240 D-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGS-M-DNSIRVWNLETLQCIQTL-TEHT  313 (393)
Q Consensus       240 ~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~-~-dg~i~iwd~~~~~~~~~~-~~~~  313 (393)
                      . ++++-...+.|.++++.....    ...+.........|+++  +.+|+.+. . .+.|.++++.... ...+ ...-
T Consensus       465 g~LY~tD~~~~~I~v~d~dg~~~----~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l  539 (699)
T 1n7d_A          465 SNIYWTDSVLGTVSVADTKGVKR----KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENI  539 (699)
T ss_dssp             SBCEECCTTTSCEEEEBSSSCCE----EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSC
T ss_pred             CcEEEEeccCCeEEEEecCCCce----EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCC
Confidence            2 455555678898888765421    11111111222345554  34444433 2 3788888875322 2222 2222


Q ss_pred             cceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcceEEEEee-cCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          314 SVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVTYTH-NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       314 ~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      ..-..|+++   +.++++-+..+.|..+++... ....+... ........+++.  .  +.++++....+.|..++..+
T Consensus       540 ~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd--~--~~lywtd~~~~~V~~~d~~~  614 (699)
T 1n7d_A          540 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF--E--DKVFWTDIINEAIFSANRLT  614 (699)
T ss_dssp             SSCCCEEECTTTCCEEEEETTTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEE--T--TEEEEECSTTTCEEEEETTT
T ss_pred             CCccEEEEeccCCEEEEEecCCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEE--C--CEEEEEeCCCCeEEEEEccC
Confidence            334567776   345555566778999998643 33333221 111112233332  2  23566666678999999877


Q ss_pred             eee
Q 016224          390 VII  392 (393)
Q Consensus       390 ~~l  392 (393)
                      ++.
T Consensus       615 G~~  617 (699)
T 1n7d_A          615 GSD  617 (699)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.92  E-value=0.019  Score=51.37  Aligned_cols=184  Identities=9%  Similarity=0.013  Sum_probs=100.5

Q ss_pred             CcEEEecCCCeEEEEECCCCcEEEEEecCC-cCCEEEEEe--cCCCCEEEEE--eCCCcEEEEECCCCeEEEEEecCCc-
Q 016224          120 GNCMYGEKCKFLHSWTVGDGFKLLTQLEGH-QKVVSGITL--PSGSDKLYSG--SKDETVRVWDCASGQCAGVINLGGE-  193 (393)
Q Consensus       120 ~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h-~~~I~~i~~--s~~~~~l~s~--s~dg~v~iwd~~~~~~~~~~~~~~~-  193 (393)
                      +.+++++.||.|+-.|..+| +.+-+++.. ..++....-  .+.+..++.+  ..||.|..++..+|.....+..+.. 
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG-~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNG-HIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTT-EEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCC-cEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            35668999999999999999 777777643 123222111  1112234444  5899999999998866655543321 


Q ss_pred             ----eEE----EE-------eCCCEEEEEcCCeEEEEECCCCceeeecCCCCc--------EEEEE-------EeCCEEE
Q 016224          194 ----VGC----MI-------SEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQ--------VYAMA-------VGNDLLF  243 (393)
Q Consensus       194 ----~~~----~~-------~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~--------v~~l~-------~~~~~l~  243 (393)
                          ...    +.       .++.+++.+.++.+...|..+++.+-.......        ..+..       ...+.++
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~  169 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV  169 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence                111    01       344444556888999999999998832222111        11111       1123666


Q ss_pred             EEeCCCcEEEEEeccCCccccCce-eecCcee--eE---EEEEEcCCEEEEecCCCcEEEeeCCCcceee
Q 016224          244 AGTQDGAILAWKFNVTTNCFEPAA-SLKGHSL--AV---VSLVVGANKLYSGSMDNSIRVWNLETLQCIQ  307 (393)
Q Consensus       244 ~~~~dg~I~vwd~~~~~~~~~~~~-~~~~~~~--~v---~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~  307 (393)
                      .+..+..+.+.+ +++. .+.... .......  .+   ..+..++.+ +.++.||.|..+|..+++.+.
T Consensus       170 ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          170 IGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             EecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            666666666655 2221 111100 0000000  00   000012334 557889999999999988765

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.87  E-value=0.0043  Score=42.32  Aligned_cols=32  Identities=25%  Similarity=0.623  Sum_probs=26.0

Q ss_pred             cccccccceeeeecccccCC-CCCCcccccCCC
Q 016224           29 STADTRQKVCNYWRAGKCNR-FPCPYLHRELPL   60 (393)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~   60 (393)
                      ..+..+..+|.||++|.|.+ ..|+|+|...+.
T Consensus         4 ~~~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~~   36 (77)
T 2d9n_A            4 GSSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMT   36 (77)
T ss_dssp             CCSCCTTSBCHHHHTTCCSCTTSSSSBCSCCTT
T ss_pred             CCCCCcceeCHhHccCcCCCCCCCCCccccccC
Confidence            34467788999999999998 679999987643

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.86  E-value=0.9  Score=40.28  Aligned_cols=264  Identities=9%  Similarity=0.049  Sum_probs=132.4

Q ss_pred             ceEEeeEecC-cEEEecCCCeEEEEECCCC--cEEEEE-ecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224          111 DILCRNWVQG-NCMYGEKCKFLHSWTVGDG--FKLLTQ-LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG  186 (393)
Q Consensus       111 ~i~c~~~~~~-~~~~g~~dg~i~vwd~~~~--~~~~~~-l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  186 (393)
                      .+.++.+.+. ..++.+..+.|. ...+.+  ++.+.. .......+.+|.|.+ + .++.++.++.|.. ..+.|+.-.
T Consensus        37 ~~~~v~~~~~~~~~~~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~-S~DgG~tW~  112 (327)
T 2xbg_A           37 TILDMSFIDRHHGWLVGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH-TTDGGQSWS  112 (327)
T ss_dssp             CEEEEEESSSSCEEEEETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE-ESSTTSSCE
T ss_pred             cEEEEEECCCCcEEEEcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE-ECCCCCCce
Confidence            6778887644 455555677653 333333  222211 112345789999986 3 3444556665544 333343322


Q ss_pred             EEec----CCceEEE--EeCCCEEEEEcCCeEEEEECCCCcee--eecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEec
Q 016224          187 VINL----GGEVGCM--ISEGPWIFIGVTNFVKAWNTQTNTDL--SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFN  257 (393)
Q Consensus       187 ~~~~----~~~~~~~--~~~~~~l~~~~~~~i~v~d~~~~~~~--~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~  257 (393)
                      ....    +.....+  ..++.+++++.++.|.. ....++..  ........+..+.+.++ .+++.+.+|.+..-+ .
T Consensus       113 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~-d  190 (327)
T 2xbg_A          113 QIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTW-E  190 (327)
T ss_dssp             ECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEE-C
T ss_pred             ECccccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEe-C
Confidence            2221    1222222  24566666666665432 22233332  22344567888998876 444455566554432 1


Q ss_pred             cCCccccCceeecCceeeEEEEEEcC-CEEEEecCCCcEEEeeCCCcceeeEecc----CccceEEEEEc-CCEEEEEeC
Q 016224          258 VTTNCFEPAASLKGHSLAVVSLVVGA-NKLYSGSMDNSIRVWNLETLQCIQTLTE----HTSVVMSLLCW-DQFLLSCSL  331 (393)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~l~~~-~~~l~s~s~  331 (393)
                      .+...++.+.  ......+..+.+.+ +.++..+.+|.+++.+...++.-..+..    +...+.++.+. +..++.++.
T Consensus       191 ~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~  268 (327)
T 2xbg_A          191 PGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG  268 (327)
T ss_dssp             TTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES
T ss_pred             CCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC
Confidence            1111122221  12334566666642 3455666788887774332333222221    22357788876 334455556


Q ss_pred             CCcEEEEEcCCCcceEEEEee-cCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          332 DKTIKVWFATDSGNLEVTYTH-NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       332 dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      ++.| ++....++....+... .....+..+.+..+.    .++.++.+|.|.-++-
T Consensus       269 ~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~----~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          269 AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD----QGFILGQKGILLRYVT  320 (327)
T ss_dssp             TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT----EEEEECSTTEEEEECC
T ss_pred             CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC----ceEEEcCCceEEEEcC
Confidence            7776 3444445444433321 112345667665322    4677778998877653

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=95.83  E-value=0.0032  Score=42.26  Aligned_cols=29  Identities=28%  Similarity=0.653  Sum_probs=24.1

Q ss_pred             ccccceeeeecccccCC-CCCCcccccCCC
Q 016224           32 DTRQKVCNYWRAGKCNR-FPCPYLHRELPL   60 (393)
Q Consensus        32 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~   60 (393)
                      ..+..+|.||++|.|.+ ..|+|+|...+.
T Consensus        13 ~~k~~vCk~fl~G~C~~G~~C~fsH~~~~~   42 (72)
T 2rhk_C           13 GEKTVVCKHWLRGLCKKGDQCEFLHEYDMT   42 (72)
T ss_dssp             CCCCSBCHHHHTTCCCCGGGSSSBCSCCTT
T ss_pred             CCcCeeCHHHhcCCCCCCCCCCCccccccc
Confidence            45678999999999999 679999986543

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=95.82  E-value=0.83  Score=39.63  Aligned_cols=221  Identities=15%  Similarity=0.114  Sum_probs=121.8

Q ss_pred             ceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEEEEEe
Q 016224          111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG-QCAGVIN  189 (393)
Q Consensus       111 ~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~  189 (393)
                      .|..++.-....+.-. ||.|+.|-....-++- .-..-...|..|+..... .++. . ||.|..|-.... +.-....
T Consensus        25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg-~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~~   99 (282)
T 3qhy_B           25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLT-MPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPAE   99 (282)
T ss_dssp             SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTS-CCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCGG
T ss_pred             CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCC-CCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCcc
Confidence            3444444444444445 8999999765321111 001123467777765443 3333 4 899999976542 2111111


Q ss_pred             cCCceEEEEe-CCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCce
Q 016224          190 LGGEVGCMIS-EGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAA  267 (393)
Q Consensus       190 ~~~~~~~~~~-~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~  267 (393)
                      ....+..+.. ....++.. ++.|..|-....-.+ ........|..++...+..+.-. ||.|+.|-.........+. 
T Consensus       100 ~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~-  176 (282)
T 3qhy_B          100 ARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPA-  176 (282)
T ss_dssp             GSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCG-
T ss_pred             cCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCce-
Confidence            1234444444 44445556 999999976553322 22223456888888777444444 7999999765432211111 


Q ss_pred             eecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCc
Q 016224          268 SLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSG  344 (393)
Q Consensus       268 ~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~  344 (393)
                         .-...|..++....+.+.- .||.|..|-....-.+-.-......|..++.-..+.+.-. ||.|..|-.....
T Consensus       177 ---~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~g  248 (282)
T 3qhy_B          177 ---EAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK-NGKVIAWGSSRTA  248 (282)
T ss_dssp             ---GGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE-TTEEEEESTTCCC
T ss_pred             ---ecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE-CCEEEEecCCCCc
Confidence               1134677888776654444 6999999976542211111112235777777655544444 9999999765443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.79  E-value=1.3  Score=41.71  Aligned_cols=145  Identities=8%  Similarity=0.032  Sum_probs=84.9

Q ss_pred             eEEeeEec---CcEEEecC-CCeEEEEECCCCcEEEEEecCC---cCCEEEEEe-------cCCCCEEEEEeCCC-----
Q 016224          112 ILCRNWVQ---GNCMYGEK-CKFLHSWTVGDGFKLLTQLEGH---QKVVSGITL-------PSGSDKLYSGSKDE-----  172 (393)
Q Consensus       112 i~c~~~~~---~~~~~g~~-dg~i~vwd~~~~~~~~~~l~~h---~~~I~~i~~-------s~~~~~l~s~s~dg-----  172 (393)
                      -..+++.+   +.++.+.. .+.|++.|.+++ .+...+..-   ......|+|       ++++++|+.+...+     
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~-~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR-MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTT-EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCC-EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            45677775   34444433 357888898886 444433322   235899999       99999777776654     


Q ss_pred             --cEEEEECCC-Ce--------EEEEEecCCceEEEEe-CCCEEEEE-cCCeEEEEECC-------CCce----------
Q 016224          173 --TVRVWDCAS-GQ--------CAGVINLGGEVGCMIS-EGPWIFIG-VTNFVKAWNTQ-------TNTD----------  222 (393)
Q Consensus       173 --~v~iwd~~~-~~--------~~~~~~~~~~~~~~~~-~~~~l~~~-~~~~i~v~d~~-------~~~~----------  222 (393)
                        .|.+.+... ++        .+..+.... -..+.+ ++.++++. ..+.|..+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~-giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCN-GATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCC-CEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCce-EEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              266665443 12        222222222 223344 34555555 56689999987       4443          


Q ss_pred             ----eeecCCCCcEEEEEEeCC--E-EEEEeCCCcEEEEEecc
Q 016224          223 ----LSLSGPVGQVYAMAVGND--L-LFAGTQDGAILAWKFNV  258 (393)
Q Consensus       223 ----~~~~~~~~~v~~l~~~~~--~-l~~~~~dg~I~vwd~~~  258 (393)
                          +...........|+++++  . +++-+....|+.++...
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence                111223345678999987  3 45555677888877654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.42  E-value=2.2  Score=41.72  Aligned_cols=192  Identities=10%  Similarity=0.031  Sum_probs=112.8

Q ss_pred             ceEEeeEec--CcEE-EecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEE-eCCCcEEEEECCCCeEEE
Q 016224          111 DILCRNWVQ--GNCM-YGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG-SKDETVRVWDCASGQCAG  186 (393)
Q Consensus       111 ~i~c~~~~~--~~~~-~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~-s~dg~v~iwd~~~~~~~~  186 (393)
                      ....++|..  +.++ +-..++.|+.++++.. .....+.........|++.+.+..|+.+ ...+.|.+.+++......
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~-~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISLKTISRAFMNGS-ALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             ceEEEEEECCCCEEEEEECCCCeEEEEECCCC-CcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            346677774  3344 3446788988888754 2233333233456788998765555444 456789999987543322


Q ss_pred             EEe--cCCceE-EEEeCCCEEEEEc---CCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEec
Q 016224          187 VIN--LGGEVG-CMISEGPWIFIGV---TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFN  257 (393)
Q Consensus       187 ~~~--~~~~~~-~~~~~~~~l~~~~---~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~  257 (393)
                      .+.  ...+.. .+.+....|+...   ...|...++.......+.........|+++++   ++++-...+.|..+|+.
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d  196 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNML  196 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence            221  222222 2233445555442   45888888877665544445667889999875   44555567789999987


Q ss_pred             cCCccccCceeecCceeeEEEEEEcCCEEEE-ecCCCcEEEeeCCCcceeeE
Q 016224          258 VTTNCFEPAASLKGHSLAVVSLVVGANKLYS-GSMDNSIRVWNLETLQCIQT  308 (393)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s-g~~dg~i~iwd~~~~~~~~~  308 (393)
                      ....  +.   +.........+++.++.|+. -...+.|...|..+++....
T Consensus       197 G~~~--~v---~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~  243 (628)
T 4a0p_A          197 GLNR--EV---IADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTI  243 (628)
T ss_dssp             SCSC--EE---EEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             CCce--EE---eeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEE
Confidence            6432  21   22222233566666665554 44578899999776654433

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.32  E-value=1.4  Score=38.98  Aligned_cols=193  Identities=10%  Similarity=0.070  Sum_probs=105.3

Q ss_pred             CcCCEEEEEecCCCCEEEEEe-CCCcEEEEECCCCeEEEEEecCC---------ceEEE-E----eCCCEEEEEc-----
Q 016224          149 HQKVVSGITLPSGSDKLYSGS-KDETVRVWDCASGQCAGVINLGG---------EVGCM-I----SEGPWIFIGV-----  208 (393)
Q Consensus       149 h~~~I~~i~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~---------~~~~~-~----~~~~~l~~~~-----  208 (393)
                      ...--.+++|++....|+.++ ..++|..||...+..... ..+.         .+..+ .    ++++++++..     
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af   89 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF   89 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence            333344678987666666666 689999999986654443 3222         11222 2    3555666543     


Q ss_pred             ---------CCeEEEEECC---CCcee---eecC-----------CCCcEEEEEEeCC--EEEEEeCC-CcEEEEEeccC
Q 016224          209 ---------TNFVKAWNTQ---TNTDL---SLSG-----------PVGQVYAMAVGND--LLFAGTQD-GAILAWKFNVT  259 (393)
Q Consensus       209 ---------~~~i~v~d~~---~~~~~---~~~~-----------~~~~v~~l~~~~~--~l~~~~~d-g~I~vwd~~~~  259 (393)
                               +..|..||+.   +++.+   .+..           .......++..++  ..++++.. +.|...+....
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence                     4679999999   66654   2211           1134788888887  66667777 77666554432


Q ss_pred             Ccc-ccCceeecCceeeEEEEEE--cCCEEEEecCCCcEEEeeCCCcce--eeEec-cC------ccceEEEEEcCCE-E
Q 016224          260 TNC-FEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQC--IQTLT-EH------TSVVMSLLCWDQF-L  326 (393)
Q Consensus       260 ~~~-~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~--~~~~~-~~------~~~v~~l~~~~~~-l  326 (393)
                      ... +...............|++  +++.|++....+.|..+|+.+...  +..-. +.      ...+..+...++. |
T Consensus       170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vll  249 (334)
T 2p9w_A          170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVL  249 (334)
T ss_dssp             CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEE
T ss_pred             EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEE
Confidence            110 0000000111112234444  577777776699999999885332  11100 11      1122233445776 5


Q ss_pred             EEEeCCCcEEEEEcCC
Q 016224          327 LSCSLDKTIKVWFATD  342 (393)
Q Consensus       327 ~s~s~dg~i~iwd~~~  342 (393)
                      ++....+.+.+.+...
T Consensus       250 V~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          250 VGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEETTEEEEEECSST
T ss_pred             EEcCCCCEEEEECCCC
Confidence            5555566666665544

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.85  E-value=3.6  Score=41.09  Aligned_cols=215  Identities=12%  Similarity=0.162  Sum_probs=122.0

Q ss_pred             ceEEeeEecC-cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 016224          111 DILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN  189 (393)
Q Consensus       111 ~i~c~~~~~~-~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  189 (393)
                      .|.++....+ .+.+|+.+| +..||..+. +...........|.++... ++ .|..++.+ -|..+|..+++......
T Consensus        64 ~i~~i~~d~~g~lWigT~~G-l~~yd~~~~-~f~~~~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~~~~~~~  138 (758)
T 3ott_A           64 RIYCGVIIDNTYLYMGTDNG-ILVYNYRAD-RYEQPETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRKLTSFDT  138 (758)
T ss_dssp             CEEEEEEETTTEEEEEETTE-EEEEETTTT-EECCCSCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCCEEEECH
T ss_pred             eEEEEEEcCCCcEEEEeCCC-eEEEeCCCC-EEECcccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCeEEEecc
Confidence            5777765544 566787665 788998776 3322111123457777653 44 56667666 57889987765443211


Q ss_pred             -----cCCceEEEEe--CCCEEEEEcCCeEEEEECCCCceeeecCC------CCcEEEEEEeCC--EEEEEeCCCcEEEE
Q 016224          190 -----LGGEVGCMIS--EGPWIFIGVTNFVKAWNTQTNTDLSLSGP------VGQVYAMAVGND--LLFAGTQDGAILAW  254 (393)
Q Consensus       190 -----~~~~~~~~~~--~~~~l~~~~~~~i~v~d~~~~~~~~~~~~------~~~v~~l~~~~~--~l~~~~~dg~I~vw  254 (393)
                           ....+..+..  ++.+.+ +..+-+..++..+++...+...      ...|.++....+  .|..|+. +-|..+
T Consensus       139 ~~~~l~~~~i~~i~~d~~g~lWi-gt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~  216 (758)
T 3ott_A          139 RRNGLPNNTIYSIIRTKDNQIYV-GTYNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQY  216 (758)
T ss_dssp             HHHCCSCSCEEEEEECTTCCEEE-EETTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEE
T ss_pred             CCCCcCCCeEEEEEEcCCCCEEE-EeCCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEE
Confidence                 1233455543  444444 4455688888877664422211      234888888753  5666664 457788


Q ss_pred             EeccCCccccCceeecCceeeEEEEEEc-CCEEEEecCCCcEEEeeCCCcceeeEecc--------CccceEEEEEc-CC
Q 016224          255 KFNVTTNCFEPAASLKGHSLAVVSLVVG-ANKLYSGSMDNSIRVWNLETLQCIQTLTE--------HTSVVMSLLCW-DQ  324 (393)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~l~~~-~~  324 (393)
                      |..+...  .....+  ....|.++..+ ...|..|+.+ -+.++|..+.+.. .+..        ....|.++..+ ..
T Consensus       217 ~~~~~~~--~~~~~l--~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g  290 (758)
T 3ott_A          217 FPSTGQI--KQTEAF--HNNSIKSLALDGNGDLLAGTDN-GLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEH  290 (758)
T ss_dssp             ETTTTEE--EEEEEE--EEEEEEEEEECTTCCEEEEETT-EEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTC
T ss_pred             cCCCCeE--EeccCC--CCCeEEEEEEcCCCCEEEEeCC-ceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCC
Confidence            8665421  111111  23457777776 3456666654 5888888765432 2211        22357888777 33


Q ss_pred             EEEEEeCCCcEEEEE
Q 016224          325 FLLSCSLDKTIKVWF  339 (393)
Q Consensus       325 ~l~s~s~dg~i~iwd  339 (393)
                      .|..|+..| +.++.
T Consensus       291 ~lWiGT~~G-l~~~~  304 (758)
T 3ott_A          291 NIWLGTDYG-ISLSR  304 (758)
T ss_dssp             CEEEEESSS-EEEEC
T ss_pred             CEEEEeCCc-ccccc
Confidence            566666666 55543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.84  E-value=2  Score=38.23  Aligned_cols=136  Identities=14%  Similarity=0.013  Sum_probs=67.7

Q ss_pred             CcEEEEECCCCeEEEEEecCC---c-eEEEEeCCCEEEEEc-------CCeEEEEEC--CCCceeeecCC---CCc-EEE
Q 016224          172 ETVRVWDCASGQCAGVINLGG---E-VGCMISEGPWIFIGV-------TNFVKAWNT--QTNTDLSLSGP---VGQ-VYA  234 (393)
Q Consensus       172 g~v~iwd~~~~~~~~~~~~~~---~-~~~~~~~~~~l~~~~-------~~~i~v~d~--~~~~~~~~~~~---~~~-v~~  234 (393)
                      ..+.+||..+.+-...-..+.   . ......++++++.|.       ...+..||+  .+.+-..+...   ... -.+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~  247 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGF  247 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCE
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccce
Confidence            478999998876444333221   1 233444666666542       346777887  44443322221   111 112


Q ss_pred             EEEeCC-EEEEEeCC----------------------CcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecC
Q 016224          235 MAVGND-LLFAGTQD----------------------GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSM  291 (393)
Q Consensus       235 l~~~~~-~l~~~~~d----------------------g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~  291 (393)
                      +....+ +++.|+.+                      ..+.+||+.+..  +..+..+......-.++..++.+++.|+.
T Consensus       248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~  325 (357)
T 2uvk_A          248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK--WDKSGELSQGRAYGVSLPWNNSLLIIGGE  325 (357)
T ss_dssp             EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEECSSCCBSSEEEEETTEEEEEEEE
T ss_pred             EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc--eeeCCCCCCCcccceeEEeCCEEEEEeee
Confidence            333344 66666632                      246788877543  33333332222222345567777888885


Q ss_pred             CC------cEEEeeCCCcceeeEe
Q 016224          292 DN------SIRVWNLETLQCIQTL  309 (393)
Q Consensus       292 dg------~i~iwd~~~~~~~~~~  309 (393)
                      ++      .|.++++++++.+...
T Consensus       326 ~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          326 TAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             CGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             CCCCCEeeeEEEEEEcCcEeEeee
Confidence            43      3556688777765544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.33  E-value=4.2  Score=39.62  Aligned_cols=191  Identities=11%  Similarity=0.067  Sum_probs=104.8

Q ss_pred             eEEeeEec--CcEEEec-CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEE-eCCCcEEEEECCCCeEEEE
Q 016224          112 ILCRNWVQ--GNCMYGE-KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSG-SKDETVRVWDCASGQCAGV  187 (393)
Q Consensus       112 i~c~~~~~--~~~~~g~-~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~-s~dg~v~iwd~~~~~~~~~  187 (393)
                      ...++|..  +.++.+. ..+.|..++.+........+...-.....|++.+.+..|+.+ ...+.|.+.+++.......
T Consensus        42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l  121 (619)
T 3s94_A           42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL  121 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEE
Confidence            45667764  3344333 457888888765411223344333678899999866555554 5578999999875543333


Q ss_pred             Ee--cCCc-eEEEEeCCCEEEE-Ec--CCeEEEEECCCCceee-ecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEec
Q 016224          188 IN--LGGE-VGCMISEGPWIFI-GV--TNFVKAWNTQTNTDLS-LSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFN  257 (393)
Q Consensus       188 ~~--~~~~-~~~~~~~~~~l~~-~~--~~~i~v~d~~~~~~~~-~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~  257 (393)
                      +.  ...+ -..+.+.+..|+. ..  ...|...++....... ..........|+++++   ++++-...+.|..+|+.
T Consensus       122 ~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d  201 (619)
T 3s94_A          122 FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD  201 (619)
T ss_dssp             ECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS
T ss_pred             EeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC
Confidence            31  1222 2333444444544 32  3577777776554432 2334567889999864   44454566788888876


Q ss_pred             cCCccccCceeecCceeeEEEEEEcCCEEE-EecCCCcEEEeeCCCccee
Q 016224          258 VTTNCFEPAASLKGHSLAVVSLVVGANKLY-SGSMDNSIRVWNLETLQCI  306 (393)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~-sg~~dg~i~iwd~~~~~~~  306 (393)
                      ..... ........|.   ..|++.++.|+ +-...+.|...|..+++..
T Consensus       202 G~~~~-~~~~~~~~~P---~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          202 GTNRQ-AVVKGSLPHP---FALTLFEDILYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             CCEEC----------C---CCEEESSSEEEEECTTTCSEEEEESSSCCCC
T ss_pred             CCccE-EEEeCCCCCc---eEEEEeCCEEEEecCCCCEEEEEECCCCccc
Confidence            53221 1111011222   35566666554 4446778999998776543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=94.15  E-value=3.9  Score=38.53  Aligned_cols=232  Identities=8%  Similarity=0.070  Sum_probs=122.4

Q ss_pred             CEEEEEecC-CCCEEEEEeC-CCcEEEEECCCCeEEEEEecCC----ceE--EE-------EeCCCEEEEE-cCC-----
Q 016224          152 VVSGITLPS-GSDKLYSGSK-DETVRVWDCASGQCAGVINLGG----EVG--CM-------ISEGPWIFIG-VTN-----  210 (393)
Q Consensus       152 ~I~~i~~s~-~~~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~----~~~--~~-------~~~~~~l~~~-~~~-----  210 (393)
                      ....|+|+| +...|+.+.. .+.|++.|+.++..........    ...  .+       ..++..|++. ..+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            356899998 3555555544 4679999998887776665432    222  33       4477755554 222     


Q ss_pred             --eEEEEECCC-Cce------eeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEec-------cCCcc---------
Q 016224          211 --FVKAWNTQT-NTD------LSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFN-------VTTNC---------  262 (393)
Q Consensus       211 --~i~v~d~~~-~~~------~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~-------~~~~~---------  262 (393)
                        .|.+++... +..      ..+. .-.....++++++   ++++-..++.|..+|+.       ++...         
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              266665443 111      1111 1123456777874   56666678889999997       33210         


Q ss_pred             -ccCceeecCceeeEEEEEEc--CCE-EEEecCCCcEEEeeC--CCcce--eeEeccC---c------------cceE-E
Q 016224          263 -FEPAASLKGHSLAVVSLVVG--ANK-LYSGSMDNSIRVWNL--ETLQC--IQTLTEH---T------------SVVM-S  318 (393)
Q Consensus       263 -~~~~~~~~~~~~~v~~l~~~--~~~-l~sg~~dg~i~iwd~--~~~~~--~~~~~~~---~------------~~v~-~  318 (393)
                       .+.+... ........++++  +++ +++-+..+.|+.+|.  .++..  ..++-+.   .            ..-. .
T Consensus       299 ~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g  377 (496)
T 3kya_A          299 TFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG  377 (496)
T ss_dssp             TEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred             ccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence             0011111 112223456665  664 444456778888654  33322  1222111   0            0112 3


Q ss_pred             EEEc---------CCEEEEEeCCCcEEEEEcCCCcceEEEEeecC----------------------CccEEEEEeeeCC
Q 016224          319 LLCW---------DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE----------------------EHGVLALCGMPDS  367 (393)
Q Consensus       319 l~~~---------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----------------------~~~v~~~~~~~~~  367 (393)
                      +...         +.++++=.....|+.++. ++ .+..+.+...                      -.....+++.++ 
T Consensus       378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~-  454 (496)
T 3kya_A          378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV-  454 (496)
T ss_dssp             EEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT-
T ss_pred             EEEccccccccCCCeEEEEECCCCEEEEEeC-CC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC-
Confidence            3332         345555566788999884 33 4444443210                      023456666654 


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCc
Q 016224          368 EGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       368 ~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                       ++.++++=.....|+.++++.
T Consensus       455 -~g~lyVaD~~N~rIrki~~~~  475 (496)
T 3kya_A          455 -KEMFYVHDQVGHTIRTISMEQ  475 (496)
T ss_dssp             -TTEEEEEETTTTEEEEEEECC
T ss_pred             -CCEEEEEeCCCCEEEEEECCC
Confidence             133555555678899988764

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=94.12  E-value=0.012  Score=39.17  Aligned_cols=25  Identities=32%  Similarity=0.764  Sum_probs=20.3

Q ss_pred             cccceeeeecccccCCCCCCccccc
Q 016224           33 TRQKVCNYWRAGKCNRFPCPYLHRE   57 (393)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~   57 (393)
                      .+..+|.+|..|+|.|-.|+|+|..
T Consensus        40 ~~~~vC~~flkG~C~r~~C~y~H~~   64 (70)
T 3d2q_A           40 NTVTVCMDYIKGRCSREKCKYFHPP   64 (70)
T ss_dssp             TEEEBCHHHHTTCCCCTTCCSBCCC
T ss_pred             CcceeccccCcCCCCCCCcCeeCCH
Confidence            3456799999999999999999853

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=93.25  E-value=0.019  Score=39.57  Aligned_cols=25  Identities=36%  Similarity=0.650  Sum_probs=22.0

Q ss_pred             cccceeeeecccccCCCCCCccccc
Q 016224           33 TRQKVCNYWRAGKCNRFPCPYLHRE   57 (393)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~   57 (393)
                      ...-+|++|..|+|.|.+|+|+|..
T Consensus        41 ~~~~vC~dflkG~C~r~~C~y~H~~   65 (83)
T 3d2n_A           41 GRVIACFDSLKGRCSRENCKYLHPP   65 (83)
T ss_dssp             TEEECCHHHHTTCCCCSSCSSCCCC
T ss_pred             CceeehhHhhhccccCCCcceeCCh
Confidence            3467999999999999999999964

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.23  E-value=0.019  Score=41.00  Aligned_cols=25  Identities=32%  Similarity=0.723  Sum_probs=17.9

Q ss_pred             cccceeeeecccccCCCCCCccccc
Q 016224           33 TRQKVCNYWRAGKCNRFPCPYLHRE   57 (393)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~   57 (393)
                      .+..+|.+|..|+|.|-.|+|+|..
T Consensus        54 ~~~~vC~~flkG~C~r~~C~y~H~~   78 (98)
T 2e5s_A           54 NTVTVCMDYIKGRCMREKCKYFHPP   78 (98)
T ss_dssp             CEEEBCHHHHHTCCCCTTCCSBCCC
T ss_pred             CccccchhhccCCCCCCCcCccCCh
Confidence            4556777777777777777777743

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=93.11  E-value=0.019  Score=40.09  Aligned_cols=24  Identities=38%  Similarity=0.692  Sum_probs=21.6

Q ss_pred             ccceeeeecccccCCCCCCccccc
Q 016224           34 RQKVCNYWRAGKCNRFPCPYLHRE   57 (393)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~   57 (393)
                      +.-+|++|..|+|+|.+|+|+|..
T Consensus        50 ~~~vC~dflkG~C~r~~Cky~H~~   73 (89)
T 2rpp_A           50 RVIACFDSLKGRCSRENCKYLHPP   73 (89)
T ss_dssp             BEEBCHHHHHTCCCCTTCCSBCCC
T ss_pred             ceeeehhhhhCcCCCCCcceecCH
Confidence            567999999999999999999964

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=92.89  E-value=5.6  Score=36.52  Aligned_cols=134  Identities=10%  Similarity=0.140  Sum_probs=81.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-----ce--EEEEeCCCEEEEEcCCeEEEEECCCCce-----------
Q 016224          161 GSDKLYSGSKDETVRVWDCASGQCAGVINLGG-----EV--GCMISEGPWIFIGVTNFVKAWNTQTNTD-----------  222 (393)
Q Consensus       161 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~i~v~d~~~~~~-----------  222 (393)
                      ++..|+.+- ++.||.-++.....-+.+..+.     .+  ..+.++|.+|+...+..|.|..+..+..           
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~  109 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAF  109 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccccc
Confidence            444444432 3566666665433344444431     12  3344688888888888888888773321           


Q ss_pred             ----eeec----CCCCcEEEEEEeCC-----EEEEEeCCCcEEEEEeccCCccccCceee---------cCceeeEEEEE
Q 016224          223 ----LSLS----GPVGQVYAMAVGND-----LLFAGTQDGAILAWKFNVTTNCFEPAASL---------KGHSLAVVSLV  280 (393)
Q Consensus       223 ----~~~~----~~~~~v~~l~~~~~-----~l~~~~~dg~I~vwd~~~~~~~~~~~~~~---------~~~~~~v~~l~  280 (393)
                          ..+.    ....+|..+.|+|-     .|++-..|+.|++||+.....  ++. .+         ......|.+++
T Consensus       110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~--~P~-~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE--KPI-VLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS--CCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred             ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC--CCc-chhccccccCCCcccceEEEEE
Confidence                1111    13567999999985     899999999999999987432  222 11         12235678888


Q ss_pred             EcCC----EEEEecCCCcEEEe
Q 016224          281 VGAN----KLYSGSMDNSIRVW  298 (393)
Q Consensus       281 ~~~~----~l~sg~~dg~i~iw  298 (393)
                      |.++    ++++.+..|.|+-.
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEEE
T ss_pred             EcCCCcEEEEEecCCCCCEEEE
Confidence            8754    34445577888654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.72  E-value=8.3  Score=38.09  Aligned_cols=188  Identities=12%  Similarity=0.070  Sum_probs=94.4

Q ss_pred             eCCCEEEEEc-----CCeEEEEECCCCceeeec-C--------CCCcEEEEEEe-CC-EEEEEeCCC------cEEEEEe
Q 016224          199 SEGPWIFIGV-----TNFVKAWNTQTNTDLSLS-G--------PVGQVYAMAVG-ND-LLFAGTQDG------AILAWKF  256 (393)
Q Consensus       199 ~~~~~l~~~~-----~~~i~v~d~~~~~~~~~~-~--------~~~~v~~l~~~-~~-~l~~~~~dg------~I~vwd~  256 (393)
                      .++.+++.|.     .+.+.+||..+++-..+. .        ....-..+.+. .+ +++.|+.++      .+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            4555555542     236888888887655333 1        11223344442 44 666666443      4677777


Q ss_pred             ccCCccccCceeecCceeeEEEEEE-cCCEEEEecCCC--cEEEeeCCCcceeeE-----eccCccceEEEEEc---CCE
Q 016224          257 NVTTNCFEPAASLKGHSLAVVSLVV-GANKLYSGSMDN--SIRVWNLETLQCIQT-----LTEHTSVVMSLLCW---DQF  325 (393)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~sg~~dg--~i~iwd~~~~~~~~~-----~~~~~~~v~~l~~~---~~~  325 (393)
                      .+..  +.....+......-.+..+ ++.+++.|+.++  .+.+||+.+.+-...     +........++.+.   +.+
T Consensus       476 ~t~~--W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i  553 (695)
T 2zwa_A          476 KTRE--WSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG  553 (695)
T ss_dssp             TTTE--EEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred             CCCc--EEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence            6542  2222222211122233343 677778877654  799999987543221     11111122334445   456


Q ss_pred             EEEEeC--C-----CcEEEEEcCCCcc-----eEEEEeec-CCccEEEEEeeeCCCCCcEEEEEeC--------CCeEEE
Q 016224          326 LLSCSL--D-----KTIKVWFATDSGN-----LEVTYTHN-EEHGVLALCGMPDSEGKPVLLCSCN--------DNSVRF  384 (393)
Q Consensus       326 l~s~s~--d-----g~i~iwd~~~~~~-----~~~~~~~~-~~~~v~~~~~~~~~~~~~~l~s~s~--------dg~I~i  384 (393)
                      ++.|+.  +     ..+.+||+.+..-     ...+.... ....-.+++...+   +.+++.|+.        ...|.+
T Consensus       554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~---~~iyv~GG~~~~~~~~~~~~v~~  630 (695)
T 2zwa_A          554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITP---RKLLIVGGTSPSGLFDRTNSIIS  630 (695)
T ss_dssp             EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEET---TEEEEECCBCSSCCCCTTTSEEE
T ss_pred             EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCC---CEEEEECCccCCCCCCCCCeEEE
Confidence            677765  2     4588999977651     23332211 1101111222211   336777764        345899


Q ss_pred             EeCCcee
Q 016224          385 YDLPSVI  391 (393)
Q Consensus       385 wd~~s~~  391 (393)
                      ||+.+.+
T Consensus       631 yd~~t~~  637 (695)
T 2zwa_A          631 LDPLSET  637 (695)
T ss_dssp             EETTTTE
T ss_pred             EECCCCe
Confidence            9987653

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=92.51  E-value=0.037  Score=38.09  Aligned_cols=27  Identities=26%  Similarity=0.586  Sum_probs=22.8

Q ss_pred             ccccceeeeecccccCCC--CCCcccccC
Q 016224           32 DTRQKVCNYWRAGKCNRF--PCPYLHREL   58 (393)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~   58 (393)
                      ...--+|++|.+|+|+|-  .|+|.|..-
T Consensus         6 ~~~~~VCr~FlrG~C~r~d~~C~f~H~~~   34 (83)
T 3d2n_A            6 WLTLEVCREFQRGTCSRPDTECKFAHPSK   34 (83)
T ss_dssp             GGEEEBCTTGGGTCCCSCTTTCSSBCCCT
T ss_pred             cccchhcHHHhcCCCCCCCCCCCCcCCCc
Confidence            345569999999999998  899999763

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=92.46  E-value=6.4  Score=36.13  Aligned_cols=141  Identities=13%  Similarity=0.137  Sum_probs=87.9

Q ss_pred             EEEeCCCEEEEEcCCeEEEEECCCCcee-eecCC----CCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCcccc----
Q 016224          196 CMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGP----VGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFE----  264 (393)
Q Consensus       196 ~~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~----~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~----  264 (393)
                      .+..++.-++...++.||.-++...... .+...    -..|..+..+|+  +|+.. .+..|.|..+..+.....    
T Consensus        27 ~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~  105 (452)
T 3pbp_A           27 FSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSI  105 (452)
T ss_dssp             EEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHH
T ss_pred             EEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCccccc
Confidence            3445777788888888998887744322 22222    336778999888  55554 566888888873321101    


Q ss_pred             --Cc--eeecC------ceeeEEEEEEc-----CCEEEEecCCCcEEEeeCCCc--ceeeEec---------cCccceEE
Q 016224          265 --PA--ASLKG------HSLAVVSLVVG-----ANKLYSGSMDNSIRVWNLETL--QCIQTLT---------EHTSVVMS  318 (393)
Q Consensus       265 --~~--~~~~~------~~~~v~~l~~~-----~~~l~sg~~dg~i~iwd~~~~--~~~~~~~---------~~~~~v~~  318 (393)
                        ..  ..+.-      ....|..+.|+     +..|++-..|+.|++||+...  ++. .+.         .....|.+
T Consensus       106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S  184 (452)
T 3pbp_A          106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD  184 (452)
T ss_dssp             HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred             ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence              00  11111      24678899996     458999999999999999752  122 222         22356788


Q ss_pred             EEEcCC----EEEEEeCCCcEEEE
Q 016224          319 LLCWDQ----FLLSCSLDKTIKVW  338 (393)
Q Consensus       319 l~~~~~----~l~s~s~dg~i~iw  338 (393)
                      ++|.+.    |+++.+..|.|+-.
T Consensus       185 ~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          185 LEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEEcCCCcEEEEEecCCCCCEEEE
Confidence            888833    45555677888654

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=92.22  E-value=6.5  Score=35.63  Aligned_cols=233  Identities=16%  Similarity=0.169  Sum_probs=131.1

Q ss_pred             eEEeeEecCcEEEecCCCeEEEEECCCC----------cEEEEEecC-CcCCEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 016224          112 ILCRNWVQGNCMYGEKCKFLHSWTVGDG----------FKLLTQLEG-HQKVVSGITLPSGSDKLYSGSKDETVRVWDCA  180 (393)
Q Consensus       112 i~c~~~~~~~~~~g~~dg~i~vwd~~~~----------~~~~~~l~~-h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~  180 (393)
                      +..++--....+.-..||.|+.|-....          ......+.. ....+..++++....+.+.-..||.|..|-..
T Consensus        55 i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n  134 (389)
T 3kci_A           55 PVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA  134 (389)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECC
T ss_pred             eEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCC
Confidence            4444444556666778999999964321          011122221 23345666776666777777889999999653


Q ss_pred             CC---------eE--EEEEec-C-CceEEEEeCC-CEEEEEcCCeEEEEECCCCc---------ee---eec-CCCCcEE
Q 016224          181 SG---------QC--AGVINL-G-GEVGCMISEG-PWIFIGVTNFVKAWNTQTNT---------DL---SLS-GPVGQVY  233 (393)
Q Consensus       181 ~~---------~~--~~~~~~-~-~~~~~~~~~~-~~l~~~~~~~i~v~d~~~~~---------~~---~~~-~~~~~v~  233 (393)
                      ..         ..  ...+.. . ..+..+.... ..++...++.|..|-....-         ..   ... .....|.
T Consensus       135 ~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~  214 (389)
T 3kci_A          135 EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVV  214 (389)
T ss_dssp             GGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEE
T ss_pred             CCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEE
Confidence            21         11  111111 1 2344555433 34555688899999753311         11   111 1234577


Q ss_pred             EEEEeC--CEEEEEeCCCcEEEEEeccCCcc--------ccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCc
Q 016224          234 AMAVGN--DLLFAGTQDGAILAWKFNVTTNC--------FEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETL  303 (393)
Q Consensus       234 ~l~~~~--~~l~~~~~dg~I~vwd~~~~~~~--------~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~  303 (393)
                      .++...  ...++-..||.|+.|=.......        ..+..........|..++....+.++-..||.|..|-....
T Consensus       215 ~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~  294 (389)
T 3kci_A          215 DIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDY  294 (389)
T ss_dssp             EEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGG
T ss_pred             EEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Confidence            777754  46666788999999965432110        00100000112247777777777777788999999965421


Q ss_pred             -c----------eeeEecc-CccceEEEEEcCCEEEEEeCCCcEEEEEcCCCc
Q 016224          304 -Q----------CIQTLTE-HTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSG  344 (393)
Q Consensus       304 -~----------~~~~~~~-~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~  344 (393)
                       +          ....+.. ....|..|+.-..+.+....||.|..|-.....
T Consensus       295 GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~G  347 (389)
T 3kci_A          295 HRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEG  347 (389)
T ss_dssp             GTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTS
T ss_pred             CCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCC
Confidence             1          0111111 224577887777777777899999999765443

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.01  E-value=0.044  Score=39.12  Aligned_cols=27  Identities=26%  Similarity=0.646  Sum_probs=22.5

Q ss_pred             ccccceeeeecccccCCC--CCCcccccC
Q 016224           32 DTRQKVCNYWRAGKCNRF--PCPYLHREL   58 (393)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~   58 (393)
                      ..+..+|.+|+.|+|+|-  .|+|.|..-
T Consensus        17 ~~k~~VCr~FlrG~C~rgd~~C~FsH~~~   45 (98)
T 2e5s_A           17 TDKLEVCREFQRGNCARGETDCRFAHPAD   45 (98)
T ss_dssp             SSEEEBCSHHHHTCCSSHHHHCSSBCCSS
T ss_pred             hhhhhhhHHHhcCcCCCCCCCCCCcCCch
Confidence            344569999999999996  699999864

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=91.39  E-value=0.072  Score=35.59  Aligned_cols=27  Identities=30%  Similarity=0.857  Sum_probs=23.2

Q ss_pred             cccceeeeecc-cccCCCCCCcccccCC
Q 016224           33 TRQKVCNYWRA-GKCNRFPCPYLHRELP   59 (393)
Q Consensus        33 ~~~~~~~~~~~-~~~~~~~~~~~~~~~p   59 (393)
                      .+..+|.||.. |.|.+..|+|+|...+
T Consensus        42 ~~~~~C~~f~~~G~C~~~~C~y~H~~p~   69 (72)
T 2rhk_C           42 TKMSECYFYSKFGECSNKECPFLHIDPE   69 (72)
T ss_dssp             TSCCBCHHHHHHSCCSBTTCCSBCCCCC
T ss_pred             ccCCcccccCCCCCCCCCCeeccCCCcc
Confidence            45678999999 9999988999998754

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=91.39  E-value=0.046  Score=36.37  Aligned_cols=24  Identities=38%  Similarity=0.873  Sum_probs=20.8

Q ss_pred             ccceeeeecccccCCC--CCCccccc
Q 016224           34 RQKVCNYWRAGKCNRF--PCPYLHRE   57 (393)
Q Consensus        34 ~~~~~~~~~~~~~~~~--~~~~~~~~   57 (393)
                      +..+|.+|..|.|+|-  .|+|.|..
T Consensus         5 k~~vC~~f~~G~C~rg~~~C~f~H~~   30 (70)
T 3d2q_A            5 RLEVCREYQRGNCNRGENDCRFAHPA   30 (70)
T ss_dssp             EEEBCHHHHTTCCSSCTTTCSSBCCC
T ss_pred             cchhCHHHhcCCCCCCCCCCCCccCc
Confidence            4569999999999997  69999965

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}

Probab=91.23  E-value=8.8  Score=35.15  Aligned_cols=190  Identities=11%  Similarity=0.049  Sum_probs=103.8

Q ss_pred             ceEEEEeC-CCEEEEEcCCeEEEEECCCCce-------------eeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEe--
Q 016224          193 EVGCMISE-GPWIFIGVTNFVKAWNTQTNTD-------------LSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKF--  256 (393)
Q Consensus       193 ~~~~~~~~-~~~l~~~~~~~i~v~d~~~~~~-------------~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~--  256 (393)
                      .+..+... ...++...++.|..|-....-.             .........|..++......++-..||.|+.|-.  
T Consensus        76 ~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~  155 (423)
T 3mvd_K           76 DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFR  155 (423)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEE
T ss_pred             CceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCC
Confidence            34444443 3445556888999986533111             1112234568888888887777789999999975  


Q ss_pred             ccCCcc------ccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCc-c----------------------eee
Q 016224          257 NVTTNC------FEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETL-Q----------------------CIQ  307 (393)
Q Consensus       257 ~~~~~~------~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~-~----------------------~~~  307 (393)
                      ......      .............|..++....+.++-..||.|+.|-.... +                      +..
T Consensus       156 n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~  235 (423)
T 3mvd_K          156 DSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQ  235 (423)
T ss_dssp             CSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEE
T ss_pred             CCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeE
Confidence            211100      00000111123457788887778777788999999954321 1                      111


Q ss_pred             EeccCccceEEEEEcCCEEEEE-eCCCcEEEEEcCCCcce---------EEEEeecCCccEEEEEeeeCCCCCcEEEEEe
Q 016224          308 TLTEHTSVVMSLLCWDQFLLSC-SLDKTIKVWFATDSGNL---------EVTYTHNEEHGVLALCGMPDSEGKPVLLCSC  377 (393)
Q Consensus       308 ~~~~~~~~v~~l~~~~~~l~s~-s~dg~i~iwd~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s  377 (393)
                      ........|..+.......+.. ..|+.|..|-.....++         ...........+..++.-     ....+.-.
T Consensus       236 v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G-----~~ht~alt  310 (423)
T 3mvd_K          236 LIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGG-----QHHTVILT  310 (423)
T ss_dssp             ECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEEC-----SSEEEEEE
T ss_pred             EeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcc-----cCeEEEEe
Confidence            1111233566666665554444 68999999965432111         001111112245555432     22455556


Q ss_pred             CCCeEEEEeC
Q 016224          378 NDNSVRFYDL  387 (393)
Q Consensus       378 ~dg~I~iwd~  387 (393)
                      .||.|+.|--
T Consensus       311 ~~G~v~~wG~  320 (423)
T 3mvd_K          311 TDLKCSVVGR  320 (423)
T ss_dssp             TTCCEEEEEC
T ss_pred             CCCcEEEEEC
Confidence            7899998854

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=90.88  E-value=9.3  Score=34.83  Aligned_cols=270  Identities=14%  Similarity=0.152  Sum_probs=147.0

Q ss_pred             ceEEeeEecCcEEEecCCCeEEEEECCCC----------cEEEEEecC-CcCCEEEEEecCCCCEEEEEeCC-CcEEEEE
Q 016224          111 DILCRNWVQGNCMYGEKCKFLHSWTVGDG----------FKLLTQLEG-HQKVVSGITLPSGSDKLYSGSKD-ETVRVWD  178 (393)
Q Consensus       111 ~i~c~~~~~~~~~~g~~dg~i~vwd~~~~----------~~~~~~l~~-h~~~I~~i~~s~~~~~l~s~s~d-g~v~iwd  178 (393)
                      .|..++.-....++-..+|.|+.|=....          ......+.. ....|..|+.-.+  +.+.-..| +.|..|-
T Consensus        17 ~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~--ht~al~~~gg~v~~wG   94 (406)
T 4d9s_A           17 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD--HTVAYSQSGMEVYSWG   94 (406)
T ss_dssp             CEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--EEEEEETTTTEEEEEE
T ss_pred             ceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcc--eEEEEECCCCEEEEEc
Confidence            55556655666667778899999964421          011122221 2346777776433  33333445 4899995


Q ss_pred             CCCC---------eEEEEEec----CCceEEEEeCC-CEEEEEcCCeEEEEECCCCce----------e--eecC-CCCc
Q 016224          179 CASG---------QCAGVINL----GGEVGCMISEG-PWIFIGVTNFVKAWNTQTNTD----------L--SLSG-PVGQ  231 (393)
Q Consensus       179 ~~~~---------~~~~~~~~----~~~~~~~~~~~-~~l~~~~~~~i~v~d~~~~~~----------~--~~~~-~~~~  231 (393)
                      ....         ........    ...+..+.... ..++...++.|+.|-....-.          .  .+.. ....
T Consensus        95 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~  174 (406)
T 4d9s_A           95 WGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIR  174 (406)
T ss_dssp             CCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCC
T ss_pred             CCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCc
Confidence            4321         11111111    12345555443 445556889999997543211          1  1111 1236


Q ss_pred             EEEEEEeCCEEEEEeCCCcEEEEEeccCCcc--------ccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCc
Q 016224          232 VYAMAVGNDLLFAGTQDGAILAWKFNVTTNC--------FEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETL  303 (393)
Q Consensus       232 v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~--------~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~  303 (393)
                      |..++...+..++-..+|.|+.|-.......        ..+..........|..++....+.+.-..+|.|+.|-....
T Consensus       175 i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~  254 (406)
T 4d9s_A          175 IKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKY  254 (406)
T ss_dssp             EEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTT
T ss_pred             EEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCC
Confidence            8888888887777789999999964432110        00111111112456777777777777778999999965321


Q ss_pred             -ce----------eeEec-cCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcce----------EEEEeecCCccEEEE
Q 016224          304 -QC----------IQTLT-EHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNL----------EVTYTHNEEHGVLAL  361 (393)
Q Consensus       304 -~~----------~~~~~-~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~----------~~~~~~~~~~~v~~~  361 (393)
                       ++          ...+. .....|..++.-..+.+.-..||.|..|=.....++          ...........+..+
T Consensus       255 GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v  334 (406)
T 4d9s_A          255 GQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQV  334 (406)
T ss_dssp             STTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEE
T ss_pred             CCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEE
Confidence             11          11111 122347777777777777789999999965432211          111111222346666


Q ss_pred             EeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          362 CGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       362 ~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      +.-     ....+.-..||.|+.|=-
T Consensus       335 a~G-----~~hs~alt~~G~v~~wG~  355 (406)
T 4d9s_A          335 SCG-----WRHTLAVTERNNVFAWGR  355 (406)
T ss_dssp             EEC-----SSEEEEEETTSCEEEEEC
T ss_pred             EeC-----CCeEEEEeCCCCEEEecC
Confidence            442     224555567899999864

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=90.86  E-value=10  Score=39.02  Aligned_cols=41  Identities=24%  Similarity=0.321  Sum_probs=35.8

Q ss_pred             CCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC
Q 016224          151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG  191 (393)
Q Consensus       151 ~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~  191 (393)
                      ..|.+++..++..+|+|-+.|+++|+|++.+++++.+....
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~  276 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS  276 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence            35777888888899999999999999999999999887653

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.58  E-value=0.12  Score=34.96  Aligned_cols=26  Identities=27%  Similarity=0.849  Sum_probs=22.6

Q ss_pred             ccceeeeecc-cccCCCCCCcccccCC
Q 016224           34 RQKVCNYWRA-GKCNRFPCPYLHRELP   59 (393)
Q Consensus        34 ~~~~~~~~~~-~~~~~~~~~~~~~~~p   59 (393)
                      +..+|.||.. |.|.+..|+|+|...+
T Consensus        37 ~~~~C~~f~~~G~C~~~~C~f~H~~~~   63 (77)
T 2d9n_A           37 KMPECYFYSKFGECSNKECPFLHIDPE   63 (77)
T ss_dssp             TSCBCHHHHHTCCCCCSSCSSBCCCTT
T ss_pred             cCCCCcccCCCCccCCCCeeccCCCcc
Confidence            4568999999 9999888999998754

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=90.15  E-value=10  Score=33.99  Aligned_cols=150  Identities=11%  Similarity=0.152  Sum_probs=76.6

Q ss_pred             EEEEEEeCC-EEEEEe-------------CCCcEEEEEeccCCccccCceee----cCceeeEEEEEE----cCC-EE-E
Q 016224          232 VYAMAVGND-LLFAGT-------------QDGAILAWKFNVTTNCFEPAASL----KGHSLAVVSLVV----GAN-KL-Y  287 (393)
Q Consensus       232 v~~l~~~~~-~l~~~~-------------~dg~I~vwd~~~~~~~~~~~~~~----~~~~~~v~~l~~----~~~-~l-~  287 (393)
                      ...+...++ ++++++             .+|.|.++|+.+.....+.+...    .........+.+    ++. +| +
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            445556666 555554             78999999987532221211111    111223334443    233 33 4


Q ss_pred             EecC--CCcEEEeeCCCc----ceeeEeccCc-cceEEEEEc--CCEEEEEeC-----------------CCcEEEEEcC
Q 016224          288 SGSM--DNSIRVWNLETL----QCIQTLTEHT-SVVMSLLCW--DQFLLSCSL-----------------DKTIKVWFAT  341 (393)
Q Consensus       288 sg~~--dg~i~iwd~~~~----~~~~~~~~~~-~~v~~l~~~--~~~l~s~s~-----------------dg~i~iwd~~  341 (393)
                      +-..  +.+|.+|++...    ..+.++.+.. ...+.+.+.  +.+.++...                 .|.|.-+|. 
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-  210 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-  210 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence            4333  567888876542    2233443321 234667666  555555431                 244555554 


Q ss_pred             CCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          342 DSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       342 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                       + .+..+...-  .....++|+|+..  .+.++-+..+.|..|++.
T Consensus       211 -~-~~~~~~~~l--~~pNGia~spDg~--~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          211 -N-DVRVVAEGF--DFANGINISPDGK--YVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             -T-CCEEEEEEE--SSEEEEEECTTSS--EEEEEEGGGTEEEEEEEC
T ss_pred             -C-eEEEeecCC--cccCcceECCCCC--EEEEEeCCCCeEEEEEEC
Confidence             2 233332221  2367789988754  244445567899999985

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=89.86  E-value=8.4  Score=32.67  Aligned_cols=184  Identities=8%  Similarity=0.037  Sum_probs=102.0

Q ss_pred             eCCCEEEE-E-cCCeEEEEECCCCcee-ee-cCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceee---
Q 016224          199 SEGPWIFI-G-VTNFVKAWNTQTNTDL-SL-SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASL---  269 (393)
Q Consensus       199 ~~~~~l~~-~-~~~~i~v~d~~~~~~~-~~-~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~---  269 (393)
                      +++..|++ . .++.|...|.. ++.+ .+ ..-......|++.++  ++++.-.++.+.++++...... ......   
T Consensus        36 ~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i-~~~~~~~~~  113 (255)
T 3qqz_A           36 AQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEV-KILKKIKIP  113 (255)
T ss_dssp             TTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCE-EEEEEEECC
T ss_pred             CCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCee-eeeeeeccc
Confidence            34554544 4 55688889988 6655 22 122356778888776  4445446778888888765321 001111   


Q ss_pred             ---cCceeeEEEEEEc--CCEEEEecCCCcEEEeeCC---CcceeeEec-------cCccceEEEEEc---CCEEEEEeC
Q 016224          270 ---KGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLE---TLQCIQTLT-------EHTSVVMSLLCW---DQFLLSCSL  331 (393)
Q Consensus       270 ---~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~---~~~~~~~~~-------~~~~~v~~l~~~---~~~l~s~s~  331 (393)
                         .........++++  ++.|+++.......||.+.   ....+..+.       .+.....+++++   +.+++....
T Consensus       114 ~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~  193 (255)
T 3qqz_A          114 LQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHE  193 (255)
T ss_dssp             CSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETT
T ss_pred             cccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECC
Confidence               1123345677876  4467666665555555543   111122221       122345778887   457777777


Q ss_pred             CCcEEEEEcCCCcceEEEEeecC-------CccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          332 DKTIKVWFATDSGNLEVTYTHNE-------EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       332 dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      ...|.++|.. ++.+..+.-...       -...-.+++.+++.    |+..++-+.++.+.-.+
T Consensus       194 s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~----lyIvsE~n~~y~f~~~~  253 (255)
T 3qqz_A          194 SRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN----IYIVSEPNRFYRFTPQS  253 (255)
T ss_dssp             TTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC----EEEEETTTEEEEEEC--
T ss_pred             CCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC----EEEEcCCceEEEEEecC
Confidence            8889999975 443333322211       12456788876543    55557777777776543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=89.69  E-value=16  Score=36.12  Aligned_cols=183  Identities=12%  Similarity=0.100  Sum_probs=97.6

Q ss_pred             CCCCEEEEEeCC----CcEEEEECCCCeEEEEE-e-----cCC----ceEEEEe-CCCEEEEE-cC------CeEEEEEC
Q 016224          160 SGSDKLYSGSKD----ETVRVWDCASGQCAGVI-N-----LGG----EVGCMIS-EGPWIFIG-VT------NFVKAWNT  217 (393)
Q Consensus       160 ~~~~~l~s~s~d----g~v~iwd~~~~~~~~~~-~-----~~~----~~~~~~~-~~~~l~~~-~~------~~i~v~d~  217 (393)
                      .++.+++.|+.+    ..+.+||..+++-...- .     .+.    ...+... ++.+++.| .+      +.+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777753    46888998887644433 2     111    1223333 66666665 21      36889999


Q ss_pred             CCCceeeecC---CCCcEEEEEE-eCCEEEEEeCCC--cEEEEEeccCCccccCcee---ecCceeeEEEEEEc---CCE
Q 016224          218 QTNTDLSLSG---PVGQVYAMAV-GNDLLFAGTQDG--AILAWKFNVTTNCFEPAAS---LKGHSLAVVSLVVG---ANK  285 (393)
Q Consensus       218 ~~~~~~~~~~---~~~~v~~l~~-~~~~l~~~~~dg--~I~vwd~~~~~~~~~~~~~---~~~~~~~v~~l~~~---~~~  285 (393)
                      .+.+-.....   ....-.++.+ ...+++.|+.++  .+.+||+.+..  +..+..   .........++.++   +..
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~a~v~~~~~~~i  553 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--FKDVTPKDEFFQNSLVSAGLEFDPVSKQG  553 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE--EEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--eEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence            8876543322   1222233333 333777777654  68888877643  222211   11111111223334   446


Q ss_pred             EEEecC--C-----CcEEEeeCCCcce-----eeEec----cCccceEEEEEc-CCEEEEEeC--------CCcEEEEEc
Q 016224          286 LYSGSM--D-----NSIRVWNLETLQC-----IQTLT----EHTSVVMSLLCW-DQFLLSCSL--------DKTIKVWFA  340 (393)
Q Consensus       286 l~sg~~--d-----g~i~iwd~~~~~~-----~~~~~----~~~~~v~~l~~~-~~~l~s~s~--------dg~i~iwd~  340 (393)
                      ++.|+.  +     ..+.+||+.+.+-     -..+.    .......++.+. +.+++.|+.        ...|.+||+
T Consensus       554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~  633 (695)
T 2zwa_A          554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDP  633 (695)
T ss_dssp             EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEET
T ss_pred             EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEEC
Confidence            666765  2     4588999987661     11111    112223445566 677777774        345899998


Q ss_pred             CCCc
Q 016224          341 TDSG  344 (393)
Q Consensus       341 ~~~~  344 (393)
                      .+..
T Consensus       634 ~t~~  637 (695)
T 2zwa_A          634 LSET  637 (695)
T ss_dssp             TTTE
T ss_pred             CCCe
Confidence            7653

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=89.48  E-value=12  Score=34.02  Aligned_cols=232  Identities=13%  Similarity=0.133  Sum_probs=126.1

Q ss_pred             CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC-e----------EEEEEe-c-CCceEEEEeCCCE-EEEEcCC-eEE
Q 016224          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG-Q----------CAGVIN-L-GGEVGCMISEGPW-IFIGVTN-FVK  213 (393)
Q Consensus       149 h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~-~----------~~~~~~-~-~~~~~~~~~~~~~-l~~~~~~-~i~  213 (393)
                      -...|..|+.-  ..+.+.-..||.|..|=.... +          ....+. . ...+..+.....+ ++...++ .|+
T Consensus        14 ~~~~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~   91 (406)
T 4d9s_A           14 PPRKVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVY   91 (406)
T ss_dssp             -CCCEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEE
T ss_pred             CccceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEE
Confidence            34566666653  334555567888888864321 1          111111 1 1234555544444 3345554 899


Q ss_pred             EEECCCCc---------ee---eecC-CCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccc----cC---ceeecC-c
Q 016224          214 AWNTQTNT---------DL---SLSG-PVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCF----EP---AASLKG-H  272 (393)
Q Consensus       214 v~d~~~~~---------~~---~~~~-~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~----~~---~~~~~~-~  272 (393)
                      .|-....-         ..   .+.. ....|..++......++-+.+|.|+.|-........    ..   ...+.. .
T Consensus        92 ~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~  171 (406)
T 4d9s_A           92 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE  171 (406)
T ss_dssp             EEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT
T ss_pred             EEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccC
Confidence            98643211         11   1111 223688888888877777899999999754321100    00   000111 1


Q ss_pred             eeeEEEEEEcCCEEEEecCCCcEEEeeCCC-cce----------eeEec-cCccceEEEEEcCCEEEEEeCCCcEEEEEc
Q 016224          273 SLAVVSLVVGANKLYSGSMDNSIRVWNLET-LQC----------IQTLT-EHTSVVMSLLCWDQFLLSCSLDKTIKVWFA  340 (393)
Q Consensus       273 ~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~-~~~----------~~~~~-~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~  340 (393)
                      ...|..++....+.++-..+|.|+.|-... +++          ...+. .....|..++.-..+.+.-..+|.|..|-.
T Consensus       172 ~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~  251 (406)
T 4d9s_A          172 GIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGW  251 (406)
T ss_dssp             TCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred             CCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeC
Confidence            235777888778877778999999996432 110          11111 122467778777778888889999999975


Q ss_pred             CCCcce----------EEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          341 TDSGNL----------EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       341 ~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      ....++          ...........+..++.-     ....+.-..||.|+.|-.
T Consensus       252 n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G-----~~hs~alt~~G~v~~wG~  303 (406)
T 4d9s_A          252 SKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG-----WRHTMALTSDGKLYGWGW  303 (406)
T ss_dssp             CTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC-----SSEEEEEETTSCEEEEEC
T ss_pred             CCCCCCCCCCCcCccccEEecccCCCCEEEEEec-----CCEEEEEcCCCeEEEeeC
Confidence            432221          111111122235555432     224455567888988854

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B

Probab=89.42  E-value=12  Score=34.02  Aligned_cols=228  Identities=14%  Similarity=0.117  Sum_probs=131.0

Q ss_pred             ceEEeeEecCcEEEecCCCeEEEEECCCCcE------------EEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEE
Q 016224          111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFK------------LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWD  178 (393)
Q Consensus       111 ~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~------------~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd  178 (393)
                      .|..++.-....+.-..||.|+.|-....-+            .-..+. -...|..|+...  .+.+.-..||.|..|-
T Consensus        60 ~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-l~~~i~~va~G~--~hs~alt~~G~v~~wG  136 (413)
T 1a12_A           60 DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVE-LQEKVVQVSAGD--SHTAALTDDGRVFLWG  136 (413)
T ss_dssp             CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECC-CCSCEEEEEECS--SEEEEEETTSCEEEEE
T ss_pred             CeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEec-CCCcEEEEecCC--CeEEEEcCCCcEEEee
Confidence            4555555555666777899999996542100            001111 123677766543  3555567899999997


Q ss_pred             C--CC-CeE-----------EEEEecCCceEEEEeCCC-EEEEEcCCeEEEEECCCCcee--------------------
Q 016224          179 C--AS-GQC-----------AGVINLGGEVGCMISEGP-WIFIGVTNFVKAWNTQTNTDL--------------------  223 (393)
Q Consensus       179 ~--~~-~~~-----------~~~~~~~~~~~~~~~~~~-~l~~~~~~~i~v~d~~~~~~~--------------------  223 (393)
                      .  .. +++           ...+.....+..+..... .++...++.|..|-....-.+                    
T Consensus       137 ~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~  216 (413)
T 1a12_A          137 SFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLL  216 (413)
T ss_dssp             CEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHH
T ss_pred             CCcCCCCccCcCCccccccCCEEecCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccc
Confidence            5  21 111           111222334555554333 445568889999975432110                    


Q ss_pred             -----eecC----CCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCcc--------ccC--ceeecCceeeEEEEEEcCC
Q 016224          224 -----SLSG----PVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNC--------FEP--AASLKGHSLAVVSLVVGAN  284 (393)
Q Consensus       224 -----~~~~----~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~--------~~~--~~~~~~~~~~v~~l~~~~~  284 (393)
                           .+..    ....|..++......++-..+|.|+.|=.......        ..+  +..+......|..++....
T Consensus       217 ~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~  296 (413)
T 1a12_A          217 VPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQH  296 (413)
T ss_dssp             SCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSS
T ss_pred             cCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccc
Confidence                 1100    23568888888886667779999999976532110        001  1111111134777877777


Q ss_pred             EEEEecCCCcEEEeeCCC-cc-----------eeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCC
Q 016224          285 KLYSGSMDNSIRVWNLET-LQ-----------CIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATD  342 (393)
Q Consensus       285 ~l~sg~~dg~i~iwd~~~-~~-----------~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~  342 (393)
                      +.+.-..||.|+.|-... ++           ....+.. ...|..|+.-..+.+.-..||.|..|-...
T Consensus       297 hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~-l~~v~~v~~G~~hs~alt~~G~v~~wG~n~  365 (413)
T 1a12_A          297 HTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR-LPAVSSVACGASVGYAVTKDGRVFAWGMGT  365 (413)
T ss_dssp             EEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCS-SSSEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred             eEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecc-cCceeEEEECcceEEEEeCCCCEEEecCCC
Confidence            777777899999996532 11           1111111 226788887777777778999999997654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=89.38  E-value=11  Score=33.48  Aligned_cols=69  Identities=10%  Similarity=0.137  Sum_probs=44.7

Q ss_pred             eEEeeEecC-cEEEecCCCeEEEEECCCC-cEEEEEec---CCcCCEEEEEecCC---CCEEEEEeCC------CcEEEE
Q 016224          112 ILCRNWVQG-NCMYGEKCKFLHSWTVGDG-FKLLTQLE---GHQKVVSGITLPSG---SDKLYSGSKD------ETVRVW  177 (393)
Q Consensus       112 i~c~~~~~~-~~~~g~~dg~i~vwd~~~~-~~~~~~l~---~h~~~I~~i~~s~~---~~~l~s~s~d------g~v~iw  177 (393)
                      -..++|.++ .++++...+.|++++  ++ .+.+..+.   ........|+|+|+   +..|+.+...      ..|..+
T Consensus        33 P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~  110 (352)
T 2ism_A           33 PWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL  110 (352)
T ss_dssp             EEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred             ceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence            356778766 466777889999998  33 12333322   22457899999998   5556554432      578888


Q ss_pred             ECCCC
Q 016224          178 DCASG  182 (393)
Q Consensus       178 d~~~~  182 (393)
                      +...+
T Consensus       111 ~~~~~  115 (352)
T 2ism_A          111 RHLGE  115 (352)
T ss_dssp             EECSS
T ss_pred             EeCCC
Confidence            87644

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=89.08  E-value=0.13  Score=36.61  Aligned_cols=25  Identities=32%  Similarity=1.031  Sum_probs=20.6

Q ss_pred             ccccceeeeecccccCCCC-CCcccc
Q 016224           32 DTRQKVCNYWRAGKCNRFP-CPYLHR   56 (393)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~-~~~~~~   56 (393)
                      .....+|.||+.|.|.+-. |+|.|.
T Consensus        10 ~~k~~lC~~f~~G~C~~G~~C~f~H~   35 (98)
T 2cqe_A           10 PKKRELCKFYITGFCARAENCPYMHG   35 (98)
T ss_dssp             SCCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred             CCCCccCcccccCcCCCCCCCCCCCC
Confidence            3567789999999999865 999998

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=88.93  E-value=0.2  Score=34.92  Aligned_cols=27  Identities=26%  Similarity=0.671  Sum_probs=22.6

Q ss_pred             cccceeeeecccccCCC--CCCcccccCC
Q 016224           33 TRQKVCNYWRAGKCNRF--PCPYLHRELP   59 (393)
Q Consensus        33 ~~~~~~~~~~~~~~~~~--~~~~~~~~~p   59 (393)
                      ..--||++|.+|+|+|-  .|+|.|..-+
T Consensus        15 ~~~~VCrdFlrG~C~r~d~~CrfsH~~~~   43 (89)
T 2rpp_A           15 LTLEVCRQFQRGTCSRSDEECKFAHPPKS   43 (89)
T ss_dssp             SEECBCHHHHHTCCCCCTTTSSSBCCCSS
T ss_pred             chhhhchHHhcCCCCCCCCCCCCcCCCcc
Confidence            34569999999999997  8999997643

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=87.83  E-value=7.9  Score=38.07  Aligned_cols=114  Identities=13%  Similarity=0.132  Sum_probs=68.7

Q ss_pred             CCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCc------------eeec-----CceeeEEEEEEcCCEEEEecC
Q 016224          229 VGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPA------------ASLK-----GHSLAVVSLVVGANKLYSGSM  291 (393)
Q Consensus       229 ~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~------------~~~~-----~~~~~v~~l~~~~~~l~sg~~  291 (393)
                      ..+..-++.+++.++++-.||.+.-.+-.... .+++.            .-+.     .....|.++.++..++++-+.
T Consensus       161 R~Ph~L~avs~~~liVsL~DGGLLrL~r~~~~-d~~~~~Fnd~s~l~SL~~lf~~~~~~~~~~~Is~~~~~~~fLftL~~  239 (729)
T 3f7f_A          161 RVPHFLFYVSPQFSVVFLEDGGLLGLKKVDGV-HYEPLLFNDNSYLKCLTRFFSRSSKSDYDSVISCKLFHERYLIVLTQ  239 (729)
T ss_dssp             SCEEEEEECSSSBEEEEETTSCEECCEESSSS-CEECCCCCCCGGGGGGSTTCCTTCSSCCCCEEEEEEETTTEEEEEET
T ss_pred             cCCcEEEEECCCeEEEEEcCCCEEEEEeccCC-CcceeeecCCchhhhhHHhhcCCCCCCcCceEEEeccCCcEEEEEEc
Confidence            34455566667777777777776655533221 11100            0011     122356777788889999999


Q ss_pred             CCcEEEeeCCCcceeeEeccCc-------------cceEEEEEcCCEEEEEe--CCCcEEEEEcCCC
Q 016224          292 DNSIRVWNLETLQCIQTLTEHT-------------SVVMSLLCWDQFLLSCS--LDKTIKVWFATDS  343 (393)
Q Consensus       292 dg~i~iwd~~~~~~~~~~~~~~-------------~~v~~l~~~~~~l~s~s--~dg~i~iwd~~~~  343 (393)
                      |.++|+||+++++++.+..-..             .+-.-+...+.++++=+  .+|..++|.+...
T Consensus       240 Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~~~lv~y~P~~~G~Fk~~~l~~~  306 (729)
T 3f7f_A          240 NCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYNNTLVTLLPLENGLFQMGTLLVD  306 (729)
T ss_dssp             TCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESSSEEEEEETTTTCEEEEEEEEC-
T ss_pred             CCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhheeeEEEEEecCCCCeEEEEEEEEc
Confidence            9999999999999887765411             11122233355655433  4678999988543

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=86.49  E-value=18  Score=32.60  Aligned_cols=154  Identities=16%  Similarity=0.180  Sum_probs=84.6

Q ss_pred             cEEEEEEeCCEEEEEeCCCcEEEEEeccCCcc----------ccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeC
Q 016224          231 QVYAMAVGNDLLFAGTQDGAILAWKFNVTTNC----------FEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNL  300 (393)
Q Consensus       231 ~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~----------~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~  300 (393)
                      .+..++......++-..||.|+.|=.......          ...+..+......+..++....+.+.-..||.|+.|-.
T Consensus        54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~  133 (389)
T 3kci_A           54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE  133 (389)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEEC
T ss_pred             ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeC
Confidence            45666666667777788999999864432110          00111111112233344445667777788999999964


Q ss_pred             CC-cc----------eeeEecc-CccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcc---------e-EEEEeecCCccE
Q 016224          301 ET-LQ----------CIQTLTE-HTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGN---------L-EVTYTHNEEHGV  358 (393)
Q Consensus       301 ~~-~~----------~~~~~~~-~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~---------~-~~~~~~~~~~~v  358 (393)
                      .. ++          ....+.. ....|..++.-..+.+.-..||.|..|-.....+         . ...........+
T Consensus       134 n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v  213 (389)
T 3kci_A          134 AEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRV  213 (389)
T ss_dssp             CGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCE
T ss_pred             CCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeE
Confidence            32 11          1111111 2236788888788888888999999996532111         1 111111122345


Q ss_pred             EEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          359 LALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       359 ~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      ..++.-.   +....+.-..||.|..|-.
T Consensus       214 ~~ia~G~---g~~~t~~l~~~G~v~~wG~  239 (389)
T 3kci_A          214 VDIACGS---GDAQTLCLTDDDTVWSWGD  239 (389)
T ss_dssp             EEEEECC---SSCEEEEEETTTEEEEEEC
T ss_pred             EEEEEcC---CCcEEEEEccCCEEEEEeC
Confidence            5554421   1125566678899999854

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}

Probab=84.80  E-value=23  Score=32.26  Aligned_cols=261  Identities=11%  Similarity=0.068  Sum_probs=139.6

Q ss_pred             CcEEEecCCCeEEEEECCC------C-----cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC-e----
Q 016224          120 GNCMYGEKCKFLHSWTVGD------G-----FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG-Q----  183 (393)
Q Consensus       120 ~~~~~g~~dg~i~vwd~~~------~-----~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~-~----  183 (393)
                      ...+.-..+|.|+.|=...      +     ......+. .-..|..|+..  ..+.+.-..||.|..|-.... +    
T Consensus        34 ~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~-~l~~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~  110 (423)
T 3mvd_K           34 ELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVA-GIPDAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRD  110 (423)
T ss_dssp             CCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECC-SCSSEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSC
T ss_pred             ccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEcc-CCCCceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCC
Confidence            3334456677788874321      0     01111222 22457666654  456666678999999965321 1    


Q ss_pred             --------EEEEEecCCceEEEEeC-CCEEEEEcCCeEEEEEC--CCCcee-----------eecCCCCcEEEEEEeCCE
Q 016224          184 --------CAGVINLGGEVGCMISE-GPWIFIGVTNFVKAWNT--QTNTDL-----------SLSGPVGQVYAMAVGNDL  241 (393)
Q Consensus       184 --------~~~~~~~~~~~~~~~~~-~~~l~~~~~~~i~v~d~--~~~~~~-----------~~~~~~~~v~~l~~~~~~  241 (393)
                              ....+.....+..+... ...++...++.|..|-.  ...-.+           ........|..++...+.
T Consensus       111 ~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~h  190 (423)
T 3mvd_K          111 TSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADH  190 (423)
T ss_dssp             CCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSE
T ss_pred             CcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCe
Confidence                    11122233445555543 34455568889999975  221111           112234568888888887


Q ss_pred             EEEEeCCCcEEEEEeccCCcc-------------------ccCceeecCceeeEEEEEEcCCEEEEe-cCCCcEEEeeCC
Q 016224          242 LFAGTQDGAILAWKFNVTTNC-------------------FEPAASLKGHSLAVVSLVVGANKLYSG-SMDNSIRVWNLE  301 (393)
Q Consensus       242 l~~~~~dg~I~vwd~~~~~~~-------------------~~~~~~~~~~~~~v~~l~~~~~~l~sg-~~dg~i~iwd~~  301 (393)
                      .++-..+|.|+.|=.......                   ..+..........|..++......+.. ..++.|..|-..
T Consensus       191 s~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n  270 (423)
T 3mvd_K          191 LVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLN  270 (423)
T ss_dssp             EEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred             EEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCC
Confidence            777789999999964432110                   011111111223566666655543333 689999999643


Q ss_pred             Ccc-----------eeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcc---------eEEE-EeecCCccEEE
Q 016224          302 TLQ-----------CIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGN---------LEVT-YTHNEEHGVLA  360 (393)
Q Consensus       302 ~~~-----------~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~---------~~~~-~~~~~~~~v~~  360 (393)
                      ..-           ...........|..|+.-..+.+.-..||.|..|-.....+         .... ........+..
T Consensus       271 ~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~  350 (423)
T 3mvd_K          271 NFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVS  350 (423)
T ss_dssp             TTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEE
T ss_pred             CCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEE
Confidence            211           11111111346777877777777888999999996532211         1111 11111114666


Q ss_pred             EEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          361 LCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       361 ~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      ++.-..     ..+.-..||.|+.|=..
T Consensus       351 ia~G~~-----hs~alt~~G~v~~wG~n  373 (423)
T 3mvd_K          351 VGCGEV-----CSYAVTIDGKLYSWGSG  373 (423)
T ss_dssp             EEEETT-----EEEEEETTSCEEEEECC
T ss_pred             EEcCCC-----eEEEEcCCCCEEEECCC
Confidence            654322     34444788999999654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=80.59  E-value=30  Score=30.61  Aligned_cols=92  Identities=13%  Similarity=0.234  Sum_probs=49.8

Q ss_pred             CCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEec------CCceEEE-E-eC---CCEEEEE-c-C-----CeE
Q 016224          151 KVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL------GGEVGCM-I-SE---GPWIFIG-V-T-----NFV  212 (393)
Q Consensus       151 ~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~------~~~~~~~-~-~~---~~~l~~~-~-~-----~~i  212 (393)
                      ..-..|+|.|++++++ +..+|.|.+++  +++.......      ......+ . ++   +..|.++ . .     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            4567899999998554 56679999998  4543222111      1122222 2 33   3455554 2 1     677


Q ss_pred             EEEECCCCc-----ee-e-ec---CCCCcEEEEEEeCC-EEEEE
Q 016224          213 KAWNTQTNT-----DL-S-LS---GPVGQVYAMAVGND-LLFAG  245 (393)
Q Consensus       213 ~v~d~~~~~-----~~-~-~~---~~~~~v~~l~~~~~-~l~~~  245 (393)
                      ..++.....     .+ . +.   ........|+|.++ .|+++
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~  151 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVT  151 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEE
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEE
Confidence            788876432     11 1 22   11123357899888 44443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	393
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-16
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-15
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-10
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.003
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.004
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	7e-05
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-04
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	4e-04
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	5e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.001

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.4 bits (194), Expect = 3e-17
 Identities = 45/230 (19%), Positives = 85/230 (36%), Gaps = 25/230 (10%)

Query: 114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET 173
                 G+ +                   +    GH++ V  +        + S S D+T
Sbjct: 107 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 166

Query: 174 VRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVY 233
           VRVW  A+ +C   +     V   IS               W  +++          +  
Sbjct: 167 VRVWVVATKECKAELREHRHVVECIS---------------WAPESSYSSISEATGSETK 211

Query: 234 AMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK--LYSGSM 291
                   L +G++D  I  W  +          +L GH   V  ++  +    + S + 
Sbjct: 212 KSGKPGPFLLSGSRDKTIKMWDVST----GMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 267

Query: 292 DNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVW 338
           D ++RVW+ +  +C++TL  H   V S L +     ++++ S+D+T+KVW
Sbjct: 268 DKTLRVWDYKNKRCMKTLNAHEHFVTS-LDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.2 bits (178), Expect = 4e-15
 Identities = 50/275 (18%), Positives = 88/275 (32%), Gaps = 40/275 (14%)

Query: 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC-------AGVINLGGEVGCMI 198
           L GH+  V+ +        + S S+D T++VWD  +G            +          
Sbjct: 13  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72

Query: 199 SEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNV 258
                              +    +          ++    D + + ++D  I  W+   
Sbjct: 73  LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 132

Query: 259 TTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVV 316
                    +  GH   V  +    +   + S S D ++RVW + T +C   L EH  VV
Sbjct: 133 GYCVK----TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188

Query: 317 MSLLCW----------------------DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNE 354
             +                           FLLS S DKTIK+W  +    L     H  
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-- 246

Query: 355 EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
           ++ V  +           +L   +D ++R +D  +
Sbjct: 247 DNWVRGVLFHSGG---KFILSCADDKTLRVWDYKN 278

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.1 bits (162), Expect = 4e-13
 Identities = 53/275 (19%), Positives = 100/275 (36%), Gaps = 24/275 (8%)

Query: 114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET 173
                 G  +               GF+ +  + GH   VS +++    D + S S+D+T
Sbjct: 65  ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 124

Query: 174 VRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVY 233
           +++W+  +G C                    F G   +V+      +  L  S    Q  
Sbjct: 125 IKMWEVQTGYC-----------------VKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 167

Query: 234 AMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDN 293
            + V                 +          ++  +               L SGS D 
Sbjct: 168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 227

Query: 294 SIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYT 351
           +I++W++ T  C+ TL  H + V  +L     +F+LSC+ DKT++VW   +   ++    
Sbjct: 228 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 287

Query: 352 HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386
           H  EH V +L     +   P ++    D +V+ ++
Sbjct: 288 H--EHFVTSLDFHKTA---PYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 5/128 (3%)

Query: 264 EPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC 321
               +L GH   V  ++     + + S S D +I+VW+ ET    +TL  HT  V  +  
Sbjct: 8   PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67

Query: 322 WDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNS 381
                L  S    + +      G   +   H  +H V ++  MP+      ++ +  D +
Sbjct: 68  DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG---DHIVSASRDKT 124

Query: 382 VRFYDLPS 389
           ++ +++ +
Sbjct: 125 IKMWEVQT 132

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.7 bits (104), Expect = 8e-06
 Identities = 32/183 (17%), Positives = 64/183 (34%), Gaps = 15/183 (8%)

Query: 213 KAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLK 270
           K W  +     +LSG    V  +       ++ + ++D  I  W  +  T   +   +LK
Sbjct: 1   KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW--DYETG--DFERTLK 56

Query: 271 GHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW----DQFL 326
           GH+ +V  +    +     S    + +   +        T H                 +
Sbjct: 57  GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 116

Query: 327 LSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386
           +S S DKTIK+W       ++    H E         +  ++   ++    ND +VR + 
Sbjct: 117 VSASRDKTIKMWEVQTGYCVKTFTGHREWV-----RMVRPNQDGTLIASCSNDQTVRVWV 171

Query: 387 LPS 389
           + +
Sbjct: 172 VAT 174

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (190), Expect = 1e-16
 Identities = 59/258 (22%), Positives = 99/258 (38%), Gaps = 16/258 (6%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-GG 192
           W  G+  K    L+GH   V       G +++ SGS D T++VW   +G+C   +    G
Sbjct: 1   WRRGE-LKSPKVLKGHDDHVITCLQFCG-NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58

Query: 193 EVGCMI--SEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGA 250
            V                               +L G    V  M +    + +G++D  
Sbjct: 59  GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118

Query: 251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLT 310
           +  W         +    L GH  AV  +     ++ SG+ D  ++VW+ ET  C+ TL 
Sbjct: 119 LRVWDI----ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 174

Query: 311 EHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGK 370
            HT+ V SL      ++S SLD +I+VW       +     H      + L         
Sbjct: 175 GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD------- 227

Query: 371 PVLLCSCNDNSVRFYDLP 388
            +L+    D++V+ +D+ 
Sbjct: 228 NILVSGNADSTVKIWDIK 245

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 2e-13
 Identities = 59/257 (22%), Positives = 96/257 (37%), Gaps = 10/257 (3%)

Query: 134 WTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE 193
           W+   G K L  L GH   V    +        S  +   V   +          +    
Sbjct: 42  WSAVTG-KCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV 100

Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNT-DLSLSGPVGQVYAMAVGNDLLFAGTQDGAIL 252
               + E   +       ++ W+ +T      L G V  V  +      + +G  D  + 
Sbjct: 101 RCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK 160

Query: 253 AWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEH 312
            W             +L+GH+  V SL      + SGS+D SIRVW++ET  CI TLT H
Sbjct: 161 VWD----PETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 216

Query: 313 TSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPV 372
            S+   +   D  L+S + D T+K+W       L+     N+               K  
Sbjct: 217 QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS----AVTCLQFNKNF 272

Query: 373 LLCSCNDNSVRFYDLPS 389
           ++ S +D +V+ +DL +
Sbjct: 273 VITSSDDGTVKLWDLKT 289

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 44/274 (16%), Positives = 91/274 (33%), Gaps = 20/274 (7%)

Query: 80  GRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDG 139
               + +               I+      + + C +  +   + G +   L  W +  G
Sbjct: 68  NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG 127

Query: 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMIS 199
             L   +     V           ++ SG+ D  V+VWD  +  C   +         + 
Sbjct: 128 QCLHVLMGHVAAVRCVQYDG---RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 184

Query: 200 EGPWIFI--GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKF 256
                 +   +   ++ W+ +T   + +L+G       M + +++L +G  D  +  W  
Sbjct: 185 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDI 244

Query: 257 NVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTE----- 311
             T  C +       H  AV  L    N + + S D ++++W+L+T + I+ L       
Sbjct: 245 K-TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG 303

Query: 312 HTSVVMSLLCWD---QFLLSCSLDKT----IKVW 338
              VV   +            S + T    + V 
Sbjct: 304 SGGVVWR-IRASNTKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 7e-04
 Identities = 33/176 (18%), Positives = 57/176 (32%), Gaps = 15/176 (8%)

Query: 138 DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGC 196
           +    L  L+GH   V   +L      + SGS D ++RVWD  +G C   +         
Sbjct: 165 ETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 222

Query: 197 MISEGPWIFIGVT-NFVKAWNTQTNTDLSLSGP----VGQVYAMAVGNDLLFAGTQDGAI 251
           M  +   +  G   + VK W+ +T   L            V  +    + +   + DG +
Sbjct: 223 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 282

Query: 252 LAWKFNVTTNCFE-PAASLKGHSLAVVSLVVGANKLY------SGSMDNSIRVWNL 300
             W                 G    V  +     KL       +G+ +  + V + 
Sbjct: 283 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.9 bits (185), Expect = 7e-16
 Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 7/133 (5%)

Query: 212 VKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAAS 268
            K W+ +      + +G    + A+    +      G+ D     +           +  
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267

Query: 269 LKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQF 325
                +  VS       L +G  D +  VW+         L  H + V   L        
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC-LGVTDDGMA 326

Query: 326 LLSCSLDKTIKVW 338
           + + S D  +K+W
Sbjct: 327 VATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.8 bits (182), Expect = 2e-15
 Identities = 42/261 (16%), Positives = 83/261 (31%), Gaps = 15/261 (5%)

Query: 140 FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE------ 193
            +    L GH   +  +   + S  L S S+D  + +WD  +      I L         
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 194 VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILA 253
                +      +     +    T+           G    ++    L        +   
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164

Query: 254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLY--SGSMDNSIRVWNLETLQCIQTLTE 311
                     +   +  GH+  V+SL +  +     SG+ D S ++W++    C QT T 
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224

Query: 312 HTSVVMSLLCWD---QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSE 368
           H S + ++ C+        + S D T +++       L      N   G+ ++       
Sbjct: 225 HESDINAI-CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283

Query: 369 GKPVLLCSCNDNSVRFYDLPS 389
              +LL   +D +   +D   
Sbjct: 284 ---LLLAGYDDFNCNVWDALK 301

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.6 bits (127), Expect = 1e-08
 Identities = 39/235 (16%), Positives = 71/235 (30%), Gaps = 15/235 (6%)

Query: 76  NNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWT 135
           N       +      N +            A     + C  ++  N +         +  
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169

Query: 136 VGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-GGEV 194
             +  +  T   GH   V  ++L   +    SG+ D + ++WD   G C         ++
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229

Query: 195 GCMI--SEGPWIFIG----VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT 246
             +     G     G              Q     S    +  + +++      LL AG 
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 289

Query: 247 QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWN 299
            D     W         + A  L GH   V  L V  +   + +GS D+ +++WN
Sbjct: 290 DDFNCNVWD----ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.0 bits (115), Expect = 4e-07
 Identities = 27/154 (17%), Positives = 53/154 (34%), Gaps = 15/154 (9%)

Query: 239 NDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIR 296
             L  +G  D +   W             +  GH   + ++    N     +GS D + R
Sbjct: 196 TRLFVSGACDASAKLWD----VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251

Query: 297 VWNLETLQCIQTLTEHTSVV----MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTH 352
           +++L   Q + T +    +     +S     + LL+   D    VW A  +    V   H
Sbjct: 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311

Query: 353 NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD 386
             ++ V  L    D      +     D+ ++ ++
Sbjct: 312 --DNRVSCLGVTDDG---MAVATGSWDSFLKIWN 340

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 9e-15
 Identities = 52/254 (20%), Positives = 94/254 (37%), Gaps = 10/254 (3%)

Query: 139 GFKLLTQLEGHQKVVSGIT-LPSGSDKLYSGSKDETVRVWDCASGQCAGVIN--LGGEVG 195
           G   L ++    +   G+  L     K+ SG +D T+++WD  + +C  ++    G  + 
Sbjct: 1   GRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60

Query: 196 CMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWK 255
               E   I     + V+ W+  T   L+      +       N+ +         +A  
Sbjct: 61  LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW 120

Query: 256 FNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSV 315
              +         L GH  AV  +      + S S D +I+VWN  T + ++TL  H   
Sbjct: 121 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG 180

Query: 316 VMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLC 375
           +  L   D+ ++S S D TI++W       L V   H E                  ++ 
Sbjct: 181 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV-------RCIRFDNKRIVS 233

Query: 376 SCNDNSVRFYDLPS 389
              D  ++ +DL +
Sbjct: 234 GAYDGKIKVWDLVA 247

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 5e-10
 Identities = 41/234 (17%), Positives = 79/234 (33%), Gaps = 50/234 (21%)

Query: 114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET 173
              +  G  +   K + +  W +     +  +        +   +      + S S D T
Sbjct: 100 HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRT 159

Query: 174 VRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVY 233
           ++VW+ ++ +                                        +L+G    + 
Sbjct: 160 IKVWNTSTCEFVR-------------------------------------TLNGHKRGIA 182

Query: 234 AMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDN 293
            +   + L+ +G+ D  I  W       C      L+GH   V  +     ++ SG+ D 
Sbjct: 183 CLQYRDRLVVSGSSDNTIRLWD----IECGACLRVLEGHEELVRCIRFDNKRIVSGAYDG 238

Query: 294 SIRVWNLET---------LQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVW 338
            I+VW+L             C++TL EH+  V  L   +  ++S S D TI +W
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.4 bits (160), Expect = 1e-12
 Identities = 28/188 (14%), Positives = 57/188 (30%), Gaps = 26/188 (13%)

Query: 159 PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQ 218
           P     + +GS D  VRVWD  +G               +        G  + V      
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFL----------VERLDSENESGTGHKDSV------ 257

Query: 219 TNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS 278
               +  +     V + ++   +     Q+    +      +   E         +  V+
Sbjct: 258 --YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 315

Query: 279 LVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD--------QFLLSCS 330
                  + SGS D  +  W+ ++   +  L  H + V+S+   +            + S
Sbjct: 316 TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375

Query: 331 LDKTIKVW 338
            D   ++W
Sbjct: 376 GDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.7 bits (122), Expect = 6e-08
 Identities = 35/168 (20%), Positives = 59/168 (35%), Gaps = 24/168 (14%)

Query: 242 LFAGTQDGAILAWKFNVTTNCFE---PAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIR 296
           + AG+ D A+  W                S  GH  +V S+V   +   + SGS+D S++
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279

Query: 297 VWNLETLQCIQTLTEHTSVVMSLLCW--------------DQFLLSCSLDKTIKVWFATD 342
           +WNL+            S    +                 D+++LS S D+ +  W    
Sbjct: 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW-DKK 338

Query: 343 SGNLEVTYTHNEEHGVLALCGMPDSEGKP---VLLCSCNDNSVRFYDL 387
           SGN  +       + V+++     S   P   V      D   R +  
Sbjct: 339 SGNPLLMLQ-GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 45/287 (15%), Positives = 98/287 (34%), Gaps = 42/287 (14%)

Query: 143 LTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-GGEVGCMISEG 201
           L +   H  VV  +   +  + L +G  ++T +V+  + G     ++          +  
Sbjct: 55  LHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLN 113

Query: 202 PWIFIGVTNFVK--AWNTQTNTDLSLSGP--------------------VGQVYAMAVGN 239
                    +++   ++       + +                         +Y++    
Sbjct: 114 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 173

Query: 240 DLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWN 299
                 +  G      +++ T       S++     V         + +GS+D ++RVW+
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233

Query: 300 LETLQCIQTL-------TEHTSVVMSLLCWD---QFLLSCSLDKTIKVWFATDSGNLEVT 349
            ET   ++ L       T H   V S+  +    Q ++S SLD+++K+W   ++ N   +
Sbjct: 234 SETGFLVERLDSENESGTGHKDSVYSV-VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 292

Query: 350 YTHNEEHGVLALCGMPD-------SEGKPVLLCSCNDNSVRFYDLPS 389
            T N     +   G  D       ++    +L    D  V F+D  S
Sbjct: 293 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 339

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (116), Expect = 4e-07
 Identities = 29/166 (17%), Positives = 56/166 (33%), Gaps = 35/166 (21%)

Query: 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIF 205
             GH+  V  +        + SGS D +V++W+  +                  +     
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN---------------KSDSKT 294

Query: 206 IGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEP 265
                    +    +  LS+        A    ++ + +G++D  +L W          P
Sbjct: 295 PNSGTCEVTYIGHKDFVLSV--------ATTQNDEYILSGSKDRGVLFWD----KKSGNP 342

Query: 266 AASLKGHSLAVVSLVVGA--------NKLYSGSMDNSIRVWNLETL 303
              L+GH  +V+S+ V          N   +GS D   R+W  + +
Sbjct: 343 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.7 bits (145), Expect = 7e-11
 Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 5/125 (4%)

Query: 267 ASLKGHSLAVVS-LVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSL-LCWDQ 324
            +L+GH  +V++ L    N + +G+ D  IRV++    + +  L+ H   V +L      
Sbjct: 6   TTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 325 FLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRF 384
            L+S S   T +     D      T+     +  +    + + +    ++    DN++  
Sbjct: 66  ILVSGS---TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122

Query: 385 YDLPS 389
           + LP 
Sbjct: 123 WKLPK 127

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 8e-06
 Identities = 12/88 (13%), Positives = 32/88 (36%), Gaps = 5/88 (5%)

Query: 254 WKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQ-TLTEH 312
            +     +     +    +  A+ +  V  N L SGS +N   ++NL + + +   + + 
Sbjct: 265 IRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKD 323

Query: 313 TSVVMSLLCW--DQFLLSCSLDKTIKVW 338
              + S + +     + +   D    + 
Sbjct: 324 ADQIWS-VNFKGKTLVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 29/183 (15%), Positives = 54/183 (29%), Gaps = 39/183 (21%)

Query: 144 TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPW 203
           T L GH   V         + + +G+ D+ +RV+D  + +                    
Sbjct: 6   TTLRGHMTSVITCLQFED-NYVITGADDKMIRVYDSINKKFL------------------ 46

Query: 204 IFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNC 262
                              L LSG  G V+A+   +  +L +G+ D  +  W        
Sbjct: 47  -------------------LQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCT 87

Query: 263 FEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW 322
                         +        + +GS DN++ VW L     +    E     +     
Sbjct: 88  HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP 147

Query: 323 DQF 325
           ++ 
Sbjct: 148 EEN 150

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 58.1 bits (139), Expect = 5e-10
 Identities = 24/304 (7%), Positives = 63/304 (20%), Gaps = 52/304 (17%)

Query: 131 LHSWTV-GDGFKLLTQLEGHQK---VVSG-----ITLPSGSDKLYSGSKDETVRVWDCAS 181
             +W         L    G      V            +   +   G + + V V+D  +
Sbjct: 46  TENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT 105

Query: 182 GQCAGVINLGGEVGCMISEGPWIF--------IGVTNF----VKAWNTQTNTDLSLSGPV 229
                 I L       +     I         +    F        +    +D  L+   
Sbjct: 106 FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSA 165

Query: 230 GQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAAS--LKGHSLAVVSLVVGANK-- 285
              +         + G+   ++ A              +      + +  +         
Sbjct: 166 SCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML 225

Query: 286 LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMS---------------------LLCWDQ 324
           +++ +                  +  + S   +                     +L  + 
Sbjct: 226 VWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH 285

Query: 325 FLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVR 383
                +  +         +   + +   +  H   A+    D  G      +      + 
Sbjct: 286 SRSCLAAAENTSSV---TASVGQTSGPISNGHDSDAIIAAQD--GASDNYANSAGTEVLD 340

Query: 384 FYDL 387
            YD 
Sbjct: 341 IYDA 344

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 138 DGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGVINLGG 192
              +    +       + I    G+   Y + +  E + ++D AS Q    + L  
Sbjct: 302 SVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.9 bits (130), Expect = 4e-09
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 284 NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVW 338
            K+ S S D +I++WN+ TL+  +T+   T +    L      Q L+S S +  I   
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 26/269 (9%), Positives = 51/269 (18%), Gaps = 23/269 (8%)

Query: 138 DGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM 197
                      H    +            SG     VR+WD           +    G +
Sbjct: 46  GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPV 105

Query: 198 ISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFN 257
                         V     +                      +     +          
Sbjct: 106 KDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISG 165

Query: 258 VTTNCFEPAASLKGHSLAVVSLVVGANKLYSG----------SMDNSIRVWNLETLQCIQ 307
              N             +                          D +I ++N        
Sbjct: 166 SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG 225

Query: 308 TLTEHTSVVMSLLCW---------DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGV 358
              + +   ++                + S S DKTIK+W    +  +E T         
Sbjct: 226 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW-NVATLKVEKTIPVGTRIED 284

Query: 359 LALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
             L  +   +    L+    +  + F + 
Sbjct: 285 QQLGIIWTKQA---LVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 14/108 (12%), Positives = 33/108 (30%), Gaps = 3/108 (2%)

Query: 260 TNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSL 319
           T  F         +  V+      +K+   +   S+    + +L   +  TEH+      
Sbjct: 6   TALFPSLPRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVA 64

Query: 320 --LCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMP 365
                  +  S  +   +++W  T + ++  T        V  +    
Sbjct: 65  KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS 112

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 1e-08
 Identities = 18/149 (12%), Positives = 40/149 (26%), Gaps = 25/149 (16%)

Query: 266 AASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQ-----------CIQTLTEHTS 314
           A + K H   + S+    +   S S D  ++VW+ + L             +     H  
Sbjct: 7   ANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 315 VVMSLLCWD----QFLLSCSLDKTIKVW----------FATDSGNLEVTYTHNEEHGVLA 360
            V+  +  D      + + S    +  +             +  +L  +         L 
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126

Query: 361 LCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
                D      L+ +    +   +    
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHP 155

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 39/260 (15%), Positives = 79/260 (30%), Gaps = 40/260 (15%)

Query: 131 LHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190
           L+     +    +       +  + + + S    + +G  + TV++ + ++ +       
Sbjct: 165 LNWSPTLELQGTVESPMTPSQFATSVDI-SERGLIATGFNNGTVQISELSTLRP------ 217

Query: 191 GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGA 250
                    E     I  +N +++        L         +      +       +  
Sbjct: 218 -----LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE------TEFG 266

Query: 251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQT 308
                 +V T+  + +     HS  V+SL        L S   D  +R W+++T + I T
Sbjct: 267 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT 326

Query: 309 LTEHTSVVMSL---LCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMP 365
           L  H   +      L  D+   S +      V F        +    NE           
Sbjct: 327 LNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNE----------- 375

Query: 366 DSEGKPVLLCSCNDNSVRFY 385
                  L C C D S+R++
Sbjct: 376 ------SLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 8/95 (8%)

Query: 303 LQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVW--------FATDSGNLEVTYTHNE 354
           +        H + + S+   + F +SCS D  +KVW           D       +    
Sbjct: 4   IATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63

Query: 355 EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
            H  +      D+    ++  +     + FY +  
Sbjct: 64  HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR 98

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 21/258 (8%), Positives = 70/258 (27%), Gaps = 26/258 (10%)

Query: 152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNF 211
           + +          + + S    +  +          + +  ++  + S+          +
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKV-IFEKLDLLDSDMKKHSFWALKW 127

Query: 212 VKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKG 271
             + +   +  L  +   G  Y              +   L   ++ T        S   
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWK-----FHPFADESNSLTLNWSPTLELQGTVESPMT 182

Query: 272 HSLAVVSLVVGAN-KLYSGSMDNSIRVWN------LETLQCIQTLTEHTSVVMSLLCWDQ 324
            S    S+ +     + +G  + ++++        L   +   ++  +++ + S+    Q
Sbjct: 183 PSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242

Query: 325 FLL--SCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVL--------- 373
             L        +       ++   E   + +             +    V+         
Sbjct: 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302

Query: 374 --LCSCNDNSVRFYDLPS 389
               +  D  +RF+D+ +
Sbjct: 303 TLCSAGWDGKLRFWDVKT 320

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 9e-05
 Identities = 18/226 (7%), Positives = 56/226 (24%), Gaps = 56/226 (24%)

Query: 146 LEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIF 205
            + H   +  ++    +    S S D  ++VWD          +                
Sbjct: 10  GKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYS------------ 55

Query: 206 IGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFE- 264
               +     +      +                 L+   +  G +L ++        + 
Sbjct: 56  -HFVHKSGLHHVDVLQAIERDAFELC---------LVATTSFSGDLLFYRITREDETKKV 105

Query: 265 -------PAASLKGHSLAVVSLVVGAN-----KLYSGSMDNSIRVWNL------------ 300
                    + +K HS   +      +     +L +  +  +  +W              
Sbjct: 106 IFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165

Query: 301 ------ETLQCIQTLTEHTSVVMSL-LCWDQFLLSCSLDKTIKVWF 339
                 E    +++    +    S+ +     + +   + T+++  
Sbjct: 166 NWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISE 211

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 53.7 bits (127), Expect = 1e-08
 Identities = 27/279 (9%), Positives = 61/279 (21%), Gaps = 36/279 (12%)

Query: 76  NNTWGRNNNFNNHSNNYRAGNSKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWT 135
           N+ +                 S+ + I +  +                  +         
Sbjct: 104 NDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 163

Query: 136 VGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG 195
                + +                + S  LY  S        D      +          
Sbjct: 164 YDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS---------- 213

Query: 196 CMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWK 255
             +   P++   +            +  S +G                    D    +  
Sbjct: 214 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLN---------------DMYKRSSP 258

Query: 256 FNVTTNCFEPAASLKGHSLAVVSLVVGANKLY--SGSMDNSIRVWNLETLQCIQTLTEHT 313
            NV    +     L+   L     V G    Y         +  ++++T    + +TE  
Sbjct: 259 INVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT----RKVTEVK 314

Query: 314 SVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGNLEVT 349
           + +  L       + ++    D  I  +   +    E T
Sbjct: 315 NNLTDL-RLSADRKTVMVRKDDGKIYTF-PLEKPEDERT 351

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 20/285 (7%), Positives = 56/285 (19%), Gaps = 29/285 (10%)

Query: 131 LHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD-ETVRVWDCASGQCAGVIN 189
                V   +  + ++    ++               G+++ + + ++D  +G+      
Sbjct: 26  AFIQDVSGTY--VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEE 83

Query: 190 LGGEV--------------GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAM 235
             G V                   E   + +          ++       +      +  
Sbjct: 84  NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIA 143

Query: 236 AVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSI 295
                               +++       A +   H  A          LY  S  +  
Sbjct: 144 YGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADS-KNLYYLSYRSLD 202

Query: 296 RVWNLETLQC-------IQTLTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDSGNL 346
              +   L            +                    +   D       ++     
Sbjct: 203 PSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVD 262

Query: 347 EVTYTHNEEH--GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
              Y         +L        E       +     +  YD+ +
Sbjct: 263 PGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT 307

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.5 bits (121), Expect = 7e-08
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 284 NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW-----DQFLLSCSLDKTIKVW 338
            K  +   D +IRVW++ T +C+Q  T     + +         +  ++S SLD T+  +
Sbjct: 264 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 3e-05
 Identities = 36/290 (12%), Positives = 75/290 (25%), Gaps = 31/290 (10%)

Query: 127 KCKFLHSWTVGDG-FKLLTQLEGHQ-KVVSGITL-PSGSDK-LYSGSKDETVRVWDCASG 182
           K  F+     GD     + Q  GH   VV+ +   P    + L SG +   V VW     
Sbjct: 38  KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 97

Query: 183 QCAGVINLGGEV-----------------GCMISEGPWIFIGVTNFVKAWNTQTNTDLSL 225
           + +  + +  +                  G  +            F+   +  +  ++S 
Sbjct: 98  KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSG 157

Query: 226 SGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSL------ 279
                    +     +      D   + +             +       V  +      
Sbjct: 158 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS 217

Query: 280 --VVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKV 337
              V              +                  +        Q   +   D TI+V
Sbjct: 218 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRV 277

Query: 338 WFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 387
           W  T S  ++      ++ G   +  +    G+  ++    D ++ FY+L
Sbjct: 278 WDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR--IISLSLDGTLNFYEL 325

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 284 NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVV-MSLLCWDQFLLSCSLDKTIKVW 338
               S   DN +  W       I    E +SV+   +   D+++++ S DK   V+
Sbjct: 278 KWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 6/65 (9%)

Query: 323 DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSV 382
            ++ +S   D  +  W    +      +   E   VL+     D +    ++    D   
Sbjct: 277 GKWFVSTGKDNLLNAW---RTPYGASIFQSKESSSVLSCDISVDDK---YIVTGSGDKKA 330

Query: 383 RFYDL 387
             Y++
Sbjct: 331 TVYEV 335

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.6 bits (119), Expect = 1e-07
 Identities = 26/269 (9%), Positives = 61/269 (22%), Gaps = 41/269 (15%)

Query: 160 SGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFI------------- 206
           +   ++  G + + V V+D  +      I L      ++   PW+               
Sbjct: 66  TVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF 125

Query: 207 GVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNC--FE 264
                V   + +      +       +      D  F   +DG++    F          
Sbjct: 126 SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH 185

Query: 265 PAASLKGHSLAVVSLVVGAN--KLYSGSMDNSIRVWNLET--LQCIQTLTEHTSVVMSLL 320
                      +          +L   +    I   +L +   + +  +   T    +  
Sbjct: 186 TEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG 245

Query: 321 CWDQF--LLSCSLDKTIKVWFATDSGNLEVTYTHNE-----------------EHGVLAL 361
                   ++                                            H + ++
Sbjct: 246 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSI 305

Query: 362 CGMPDSEGKPVLLCSC-NDNSVRFYDLPS 389
               D   KP+L      D ++  +D  S
Sbjct: 306 NVSQD--EKPLLYALSTGDKTLYIHDAES 332

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 17/180 (9%), Positives = 54/180 (30%), Gaps = 22/180 (12%)

Query: 144 TQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPW 203
                 + +++       + +L   +    +   D +SG    +  +        ++G  
Sbjct: 188 VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG-- 245

Query: 204 IFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCF 263
                      W       ++    + ++Y +    D     T    ++           
Sbjct: 246 -----------WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL----DAKTG 290

Query: 264 EPAASLKGHSLAVVSLVV---GANKLY-SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSL 319
           E  A  +     + S+ V       LY   + D ++ + + E+ + ++++ +       +
Sbjct: 291 ERLAKFEMGH-EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVI 349

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 22/230 (9%), Positives = 54/230 (23%), Gaps = 33/230 (14%)

Query: 167 SGSKDETVRVWDCASGQCAGVINLGGEVGCMIS-EGPWIFI-----------GVTNFVKA 214
             +      V D  +G+  G+I+ G     +++ +G +I               T++V+ 
Sbjct: 23  HFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEV 82

Query: 215 WNTQTNTDL----------SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCF- 263
           ++  T               L G    + ++      L       A      ++    F 
Sbjct: 83  FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK 142

Query: 264 -------EPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVV 316
                               +    G+    +   + +  + + E          +    
Sbjct: 143 RMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAY 202

Query: 317 MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD 366
                    L+  +    I     +      +           A    P 
Sbjct: 203 SQ---KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPG 249

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.8 bits (114), Expect = 4e-07
 Identities = 33/253 (13%), Positives = 77/253 (30%), Gaps = 4/253 (1%)

Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVG----C 196
            +     GH K ++ ++  +    L+S   +  +  WD ++G    V             
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 197 MISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKF 256
             S+G    +   + +K      +   S      ++ +  +G  +   G    A      
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122

Query: 257 NVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVV 316
            + ++       +  +S  V            G                      H + +
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182

Query: 317 MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCS 376
            S+   +      + D++ KV   + + N E+ +T++       +  +  S     L   
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242

Query: 377 CNDNSVRFYDLPS 389
             DNSV  +++  
Sbjct: 243 SLDNSVIVWNMNK 255

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.1 bits (107), Expect = 3e-06
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 287 YSGSMDNSIRVWNLET--LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVW 338
            +GS+DNS+ VWN+       I     H    ++ + W  +  ++S   D  IK W
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 5e-07
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 288 SGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVW 338
           +GS+D +I +++++  ++ I+ L  H   V +L  W     L+S   D  IK W
Sbjct: 232 TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNL-LWETPSTLVSSGADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 1e-04
 Identities = 33/250 (13%), Positives = 74/250 (29%), Gaps = 12/250 (4%)

Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA---GVINLGGEVGCM 197
           ++L  + GH K ++ +T+    + L SGS D  +  W  +S        +++L       
Sbjct: 4   EVLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQE 59

Query: 198 ISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFN 257
            S   W      N +      +   ++ +   G    +   +DLL   +  G I+     
Sbjct: 60  YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL 119

Query: 258 VTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVM 317
            +      A SL  + +AV        +++  S                  ++   S   
Sbjct: 120 NSPGS---AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY 176

Query: 318 SLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC 377
                    +     ++ +V  +  +         + +            E         
Sbjct: 177 IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA--TGS 234

Query: 378 NDNSVRFYDL 387
            D ++  Y +
Sbjct: 235 LDTNIFIYSV 244

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 1/67 (1%)

Query: 112 ILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD 171
                  +     G     +  ++V    K++  L  H+  V+ +        L S   D
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW-ETPSTLVSSGAD 278

Query: 172 ETVRVWD 178
             ++ W+
Sbjct: 279 ACIKRWN 285

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 7e-07
 Identities = 21/120 (17%), Positives = 35/120 (29%), Gaps = 14/120 (11%)

Query: 238 GNDLLFAGTQDGAILAWKFNVTT-----------NCFEPAASLKGHSLAVVSLVVGANK- 285
             +     + DG +    F+               C          +  V S+       
Sbjct: 205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK 264

Query: 286 -LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD-QFLLSCSLDKTIKVWFATDS 343
            LY+   D  I  WNL+T + I+   +     +  +      L   + D T K   A D 
Sbjct: 265 FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQ 324

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 26/281 (9%), Positives = 74/281 (26%), Gaps = 32/281 (11%)

Query: 141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL---------- 190
           +++   +  +  +S I +      L   S D ++ V+          +            
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 191 ------GGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFA 244
                       + +    I         ++   TN + +L       Y         + 
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121

Query: 245 GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQ 304
           G  +        +         ++       + ++   +++L  G  ++ ++ + L   +
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE 181

Query: 305 CIQTLTEHTSVVMSLLCWDQF------LLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGV 358
                 E + +   +                S+D  + V F  D G+   +         
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241

Query: 359 LALCGMPD----------SEGKPVLLCSCNDNSVRFYDLPS 389
                  +          S     L  + +D  +  ++L +
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 11/88 (12%), Positives = 32/88 (36%), Gaps = 5/88 (5%)

Query: 303 LQCIQTLTEHTSVVMSLLCW---DQFLLSCSLDKTIKVW-FATDSGNLEVTYTHNEEHGV 358
           +Q +Q        +  +         LL  S D ++ V+ F   + N+++  +   +H +
Sbjct: 1   MQIVQIEQAPKDYISDI-KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59

Query: 359 LALCGMPDSEGKPVLLCSCNDNSVRFYD 386
           L    + +++ +  +     +       
Sbjct: 60  LCCNFIDNTDLQIYVGTVQGEILKVDLI 87

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.5 bits (106), Expect = 7e-06
 Identities = 20/182 (10%), Positives = 45/182 (24%), Gaps = 46/182 (25%)

Query: 133 SWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG 192
           +  V   +   +       + +            +          D  +G+         
Sbjct: 191 APDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL 250

Query: 193 E----VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQD 248
                 G    + P    GV N +  ++ +    +  +      Y +A          + 
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAF--------DKK 302

Query: 249 GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQT 308
           G                                  +KLY G   N + V+N +TL+ ++ 
Sbjct: 303 G----------------------------------DKLYLGGTFNDLAVFNPDTLEKVKN 328

Query: 309 LT 310
           + 
Sbjct: 329 IK 330

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 41.6 bits (96), Expect = 9e-05
 Identities = 19/213 (8%), Positives = 45/213 (21%), Gaps = 34/213 (15%)

Query: 155 GITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE---VGCMIS-EGPWIFIGVT- 209
           G  L +G + +   +    + V D AS        +  +      M++ +    ++    
Sbjct: 1   GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60

Query: 210 -NFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAAS 268
              +   +  T  +   +                               V  + +  A S
Sbjct: 61  YGDIYGIDLDTCKNTFHANLSS-----------------------VPGEVGRSMYSFAIS 97

Query: 269 LKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTS---VVMSLLCWDQF 325
             G  +            +       + V++       + +        V +     D  
Sbjct: 98  PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157

Query: 326 LLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGV 358
           L        I                 N     
Sbjct: 158 LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKG 188

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 131 LHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL 190
           L  + +     +      H      +      DKLY G     + V++  + +    I L
Sbjct: 274 LAKYDLKQRKLIKAANLDHT--YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331

Query: 191 GG 192
            G
Sbjct: 332 PG 333

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 19/209 (9%), Positives = 46/209 (22%), Gaps = 45/209 (21%)

Query: 114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET 173
                       +  +                           T     D     +    
Sbjct: 161 PEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG 220

Query: 174 VRVWDCASGQCAGVINLG---GEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVG 230
           +   D  +G+ A               ++       G  N +++++ + N  +       
Sbjct: 221 LLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPH 280

Query: 231 QVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGS 290
             Y++ V        + DG                                  + ++ G 
Sbjct: 281 SYYSVNV--------STDG----------------------------------STVWLGG 298

Query: 291 MDNSIRVWNLETLQCIQTLTEHTSVVMSL 319
               +  ++ ETL+    +    +  MSL
Sbjct: 299 ALGDLAAYDAETLEKKGQVDLPGNASMSL 327

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 27/288 (9%), Positives = 63/288 (21%), Gaps = 50/288 (17%)

Query: 146 LEGHQKVVSGITL-PSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE----------- 193
           +           + P G     + +K E++   D  +G+  G I+L              
Sbjct: 29  IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA 88

Query: 194 ----------VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--L 241
                         +      F      V  ++ +T +         Q+  +A   D   
Sbjct: 89  LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSK 148

Query: 242 LFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSL-------------------VVG 282
           L+   +D  ++  +           +           L                      
Sbjct: 149 LYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKD 208

Query: 283 ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLC-WDQFLLSCSLDKTIKVWFAT 341
            +     +    +   +LET +          V             +      ++ +   
Sbjct: 209 IDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESF--- 265

Query: 342 DSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS 389
           D             H   ++    D      +        +  YD  +
Sbjct: 266 DLEKNASIKRVPLPHSYYSVNVSTDGS---TVWLGGALGDLAAYDAET 310

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 10/116 (8%), Positives = 30/116 (25%), Gaps = 11/116 (9%)

Query: 286 LYSGSMDNSIRVWNLETLQCIQTLTEH------TSVVMSLLCWD--QFLLSCSLDKTIKV 337
           + + +  + + V + E +   + +T           +++           + +  +++  
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVA---PGGRIAYATVNKSESLVK 60

Query: 338 WFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVIIC 393
                   L        E  V +L G   S     L    +   +           
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 42.2 bits (97), Expect = 7e-05
 Identities = 23/175 (13%), Positives = 42/175 (24%), Gaps = 11/175 (6%)

Query: 38  CNYWRAGKCNRFPCPYLHRELPLPPAATANGAAAKRFANNTWGRNNNFNNHSNNYRAGNS 97
                    +            +    +  G A        +  N +  + S      NS
Sbjct: 132 VTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS 191

Query: 98  KNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGIT 157
               +   A      +     +      +K     S       K+  ++           
Sbjct: 192 VIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAV 251

Query: 158 LPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPW---IFIGVT 209
            P G     + S   TV V D A+      + +G        + P+    FIG  
Sbjct: 252 TPDGKKVYVALSFCNTVSVIDTATNTITATMAVG--------KNPYASGQFIGSI 298

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 1e-04
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)

Query: 113 LCRNWVQ-GNCMYGEKCKFLHS 133
           LCR +   G C YG +C F+H+
Sbjct: 10  LCRTFHTIGFCPYGPRCHFIHN 31

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 23/252 (9%), Positives = 60/252 (23%), Gaps = 21/252 (8%)

Query: 137 GDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGC 196
           G+ +  + +L+ H   V+G+     S+++ +   D    VW                   
Sbjct: 38  GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW---------KPT 88

Query: 197 MISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKF 256
           ++            +            S    +                    + +    
Sbjct: 89  LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD 148

Query: 257 NVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVV 316
               +    A S          +     K        +     +   + +   +     V
Sbjct: 149 WHPNSVLLAAGSCDFK----CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV 204

Query: 317 MSL--LCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLL 374
             +        +   S D T+ +  A     +    +       LA+  + +S     L+
Sbjct: 205 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPL--LAVTFITESS----LV 258

Query: 375 CSCNDNSVRFYD 386
            + +D     + 
Sbjct: 259 AAGHDCFPVLFT 270

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.5 bits (90), Expect = 5e-04
 Identities = 29/201 (14%), Positives = 60/201 (29%), Gaps = 13/201 (6%)

Query: 114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDET 173
           CR +        E+       +     +L+ +       V G+   +   ++   S D T
Sbjct: 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST 224

Query: 174 VRVWD---CASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTD-LSLSGPV 229
           V + D     +        L       I+E   +  G   F   +   +    LS  G +
Sbjct: 225 VCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRL 284

Query: 230 GQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV------GA 283
                 +          Q+    A       +    A     H  +V  + V        
Sbjct: 285 DVPKQSSQRGLTARERFQNLDKKAS---SEGSAAAGAGLDSLHKNSVSQISVLSGGKAKC 341

Query: 284 NKLYSGSMDNSIRVWNLETLQ 304
           ++  +  MD  + +W++ +L+
Sbjct: 342 SQFCTTGMDGGMSIWDVRSLE 362

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.5 bits (82), Expect = 4e-04
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)

Query: 113 LCRNWVQ-GNCMYGEKCKFLHS 133
           LCR + + G C YG KC+F H 
Sbjct: 11  LCRTYSESGRCRYGAKCQFAHG 32

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 5e-04
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 113 LCRNWVQ-GNCMYGEKCKFLHS 133
           LCR + + G C YGEKC+F H 
Sbjct: 8   LCRPFEESGTCKYGEKCQFAHG 29

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (88), Expect = 0.001
 Identities = 20/213 (9%), Positives = 56/213 (26%), Gaps = 25/213 (11%)

Query: 169 SKDETVRVWDCASGQCAGVINLGGEV-GCMIS-EGPWIFI-GVTNFVKAWNTQTNTDLSL 225
                + + D ++ +   V++ G  V    +S  G ++F+ G    V   +       ++
Sbjct: 39  RDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV 98

Query: 226 ------SGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLK------ 270
                 S       +   G +    +         +             +          
Sbjct: 99  AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE 158

Query: 271 ----GHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD--- 323
                   A+++       + +      I + +   L  ++T        +     D   
Sbjct: 159 YHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSH 218

Query: 324 QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH 356
           ++ ++ +  +   V   T  G L        + 
Sbjct: 219 RYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 251

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	393
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.98
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.98
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.85
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.8
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.76
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.75
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.72
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.71
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.67
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.65
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.57
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.53
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.51
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.49
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.48
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.38
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.37
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.21
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.02
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.77
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.74
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.57
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.54
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.47
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.4
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.39
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.35
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.33
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.29
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.29
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.24
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.24
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.01
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.97
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.96
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.8
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.72
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.68
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.54
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.54
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.53
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.5
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.47
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.32
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.3
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.29
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.02
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.97
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.9
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.82
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.77
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.63
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.53
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.39
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.27
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.82
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	95.66
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.98
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	94.75
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	92.93
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	91.97
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	91.22
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	90.91
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.88
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	88.37
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	86.77
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	86.7
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	86.41
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	86.29
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	84.57

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-35  Score=264.97  Aligned_cols=271  Identities=23%  Similarity=0.373  Sum_probs=234.3

Q ss_pred             ceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 016224          106 AVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ  183 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~  183 (393)
                      ..|..+|+|++|+++  .+++|+.||+|+|||+.++ +++.++++|...|.+++|++++.+++++..++.+.+|+....+
T Consensus        14 ~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (317)
T d1vyhc1          14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE   92 (317)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC-CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC
T ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-CEEEEEeCCCCcEEEEeeecccccccccccccccccccccccc
Confidence            458889999999976  4668999999999999998 8889999999999999999999999999999999999998887


Q ss_pred             EEEEEecCCc-eEE--EEeCCCEEEE-EcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEe
Q 016224          184 CAGVINLGGE-VGC--MISEGPWIFI-GVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKF  256 (393)
Q Consensus       184 ~~~~~~~~~~-~~~--~~~~~~~l~~-~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~  256 (393)
                      ....+..... ...  +.+++..+++ +.|+.+++|++++++.. .+..|...+.+++++++  +|++++.|+.|++|++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~  172 (317)
T d1vyhc1          93 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV  172 (317)
T ss_dssp             EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEee
Confidence            7666654433 222  3356776665 48899999999998877 77889999999999987  9999999999999999


Q ss_pred             ccCCccccCceeecCceeeEEEEEEc----------------------CCEEEEecCCCcEEEeeCCCcceeeEeccCcc
Q 016224          257 NVTTNCFEPAASLKGHSLAVVSLVVG----------------------ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTS  314 (393)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~l~~~----------------------~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  314 (393)
                      ...    .....+..|...+.++.+.                      +.++++++.|+.|++||+++++++.++.+|..
T Consensus       173 ~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  248 (317)
T d1vyhc1         173 ATK----ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  248 (317)
T ss_dssp             TTC----CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             ccc----eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCC
Confidence            886    4556677777777777663                      24689999999999999999999999999999


Q ss_pred             ceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          315 VVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       315 ~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                      .|.++.++  +++|++++.||.|+|||+.+++.+..+..|..  .|.+++|+|+++   +|++|+.||+|+|||
T Consensus       249 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~--~V~~~~~s~~~~---~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTAP---YVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSSSS---CEEEEETTSEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCC---EEEEEeCCCeEEEeC
Confidence            99999998  67999999999999999999888888877665  499999988766   899999999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-35  Score=258.43  Aligned_cols=276  Identities=22%  Similarity=0.352  Sum_probs=231.7

Q ss_pred             CCCCcccccceeecceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEE
Q 016224           97 SKNSNINNRAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRV  176 (393)
Q Consensus        97 ~~~~~~~~~~~~~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~i  176 (393)
                      ....++.....+...|+|+.|....+++|+.||+|+|||+.++ ++++++++|...|++|+|  ++++|++|+.|+.|++
T Consensus         3 ~~~~~i~~~~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~-~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~   79 (293)
T d1p22a2           3 HSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL-ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV   79 (293)
T ss_dssp             CCCCCEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred             eeEEEEeccCCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCC-cEEEEEecCCCCEeeeec--ccceeecccccccccc
Confidence            3445566777788899999998778889999999999999998 899999999999999987  5789999999999999


Q ss_pred             EECCCCeEEEEEecCCce-EEEEeCCCE-EEEEcCCeEEEEECCCCcee----eecCCCCcEEEEEEeCCEEEEEeCCCc
Q 016224          177 WDCASGQCAGVINLGGEV-GCMISEGPW-IFIGVTNFVKAWNTQTNTDL----SLSGPVGQVYAMAVGNDLLFAGTQDGA  250 (393)
Q Consensus       177 wd~~~~~~~~~~~~~~~~-~~~~~~~~~-l~~~~~~~i~v~d~~~~~~~----~~~~~~~~v~~l~~~~~~l~~~~~dg~  250 (393)
                      |++..+............ ......... +.+..++.+.+|+.......    .+..|...+..+.+.+..+++++.|+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~  159 (293)
T d1p22a2          80 WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRT  159 (293)
T ss_dssp             EESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSE
T ss_pred             cccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCc
Confidence            999999887777665443 333444444 44568889999999876633    567888999999999999999999999


Q ss_pred             EEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCCEEEEEe
Q 016224          251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCS  330 (393)
Q Consensus       251 I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s  330 (393)
                      |++||+++.    +.+..+.++...+..+.+++.++++++.|+.|++||+++.+.+..+..|...+..+...+.+|++++
T Consensus       160 i~~~d~~~~----~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~  235 (293)
T d1p22a2         160 IKVWNTSTC----EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA  235 (293)
T ss_dssp             EEEEETTTC----CEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEE
T ss_pred             eeeecCCCC----cEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEc
Confidence            999999876    5567788888999999999999999999999999999999999999999999999888899999999


Q ss_pred             CCCcEEEEEcCCC---------cceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          331 LDKTIKVWFATDS---------GNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       331 ~dg~i~iwd~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                      .||.|++||+...         ..+..+..|..  .|.+++|.  +   .+|+|++.||+|+|||
T Consensus       236 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~--~V~~v~~d--~---~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQFD--E---FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEEC--S---SCEEECCSSSEEEEEC
T ss_pred             CCCEEEEEECCCCccccccCCceeeEEecCCCC--CEEEEEEc--C---CEEEEEecCCEEEEeC
Confidence            9999999997532         22344445544  47777763  2   2799999999999998

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-34  Score=262.38  Aligned_cols=269  Identities=14%  Similarity=0.215  Sum_probs=218.3

Q ss_pred             ceeecceEEeeEecCc--EEEecCCCeEEEEECCCCc----EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 016224          106 AVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGF----KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDC  179 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~----~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~  179 (393)
                      ..|...|.|++|++++  +++|+ ||.|+|||+.++.    .......+|.+.|.+|+|+|++++|++++.||+|++||+
T Consensus        48 ~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~  126 (337)
T d1gxra_          48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL  126 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred             CCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccc
Confidence            3678899999999874  44555 8999999987541    233455689999999999999999999999999999998


Q ss_pred             CCC--eEEEEEecCC-ceEE--EEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCc
Q 016224          180 ASG--QCAGVINLGG-EVGC--MISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGA  250 (393)
Q Consensus       180 ~~~--~~~~~~~~~~-~~~~--~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~  250 (393)
                      ...  +....+..+. .+..  +.+++.+++++ .++.|++|++.+++.. ....|...|.+++|+++  .+++++.|+.
T Consensus       127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~  206 (337)
T d1gxra_         127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT  206 (337)
T ss_dssp             CCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            754  4445554443 3333  33577777765 7789999999998877 66778999999999887  9999999999


Q ss_pred             EEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEE
Q 016224          251 ILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFL  326 (393)
Q Consensus       251 I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l  326 (393)
                      |++||+++.    +.+..+ .|...|.+++++  +++|++++.|+.|++||+++++.. ....|...|.+++|+  +++|
T Consensus       207 v~i~d~~~~----~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l  280 (337)
T d1gxra_         207 VRSWDLREG----RQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWF  280 (337)
T ss_dssp             EEEEETTTT----EEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEE
T ss_pred             ccccccccc----eeeccc-ccccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCEE
Confidence            999999876    333333 477889999886  568999999999999999988765 456799999999998  6799


Q ss_pred             EEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          327 LSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       327 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      ++++.|+.|++||+.+++.+.... +  ...+.+++|+|++.   +|++|+.||+|+|||+
T Consensus       281 ~s~s~Dg~i~iwd~~~~~~~~~~~-~--~~~v~~~~~s~d~~---~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         281 VSTGKDNLLNAWRTPYGASIFQSK-E--SSSVLSCDISVDDK---YIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEE-C--SSCEEEEEECTTSC---EEEEEETTSCEEEEEE
T ss_pred             EEEeCCCeEEEEECCCCCEEEEcc-C--CCCEEEEEEeCCCC---EEEEEeCCCeEEEEEE
Confidence            999999999999998887665433 3  34699999988765   9999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.1e-34  Score=261.47  Aligned_cols=268  Identities=16%  Similarity=0.139  Sum_probs=217.0

Q ss_pred             ceEEeeEecC-cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEE--EE
Q 016224          111 DILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA--GV  187 (393)
Q Consensus       111 ~i~c~~~~~~-~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~--~~  187 (393)
                      ...+++++++ ..+....++.|.+||+.+. ...+.+.+|...|++++|+|++++|++|+.||+|+|||+.+++..  ..
T Consensus        19 ~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~-~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~   97 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSL-TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTT   97 (311)
T ss_dssp             CCCCCEECTTSSEEEEEETTEEEEEETTCS-SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEE
T ss_pred             CeEEEEEcCCCCEEEEEeCCEEEEEECCCC-ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccc
Confidence            3456677755 3444445778999999987 777889999999999999999999999999999999999887643  33


Q ss_pred             Eec-CCceEEE--EeCCCEEEEEc---CCeEEEEECCCCcee-eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEec
Q 016224          188 INL-GGEVGCM--ISEGPWIFIGV---TNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFN  257 (393)
Q Consensus       188 ~~~-~~~~~~~--~~~~~~l~~~~---~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~  257 (393)
                      +.. ...+.++  .+++++++++.   +..+++|+.++++.. .+..|...|.+++|+|+   .|++|+.|+.|++||++
T Consensus        98 ~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~  177 (311)
T d1nr0a1          98 IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP  177 (311)
T ss_dssp             EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT
T ss_pred             cccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccc
Confidence            443 3455444  35788777663   346999999988776 77889999999999986   68899999999999998


Q ss_pred             cCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEec-------cCccceEEEEEc--CCEE
Q 016224          258 VTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLT-------EHTSVVMSLLCW--DQFL  326 (393)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~l~~~--~~~l  326 (393)
                      +.    +.......|...|.++.++  +++|++++.|+.|++||+++++.+..+.       +|...|++++|+  +++|
T Consensus       178 ~~----~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l  253 (311)
T d1nr0a1         178 PF----KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI  253 (311)
T ss_dssp             TB----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEE
T ss_pred             cc----ccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEE
Confidence            76    5567778899999999996  5699999999999999999988877664       578899999998  6899


Q ss_pred             EEEeCCCcEEEEEcCCCcceEEEEeecC-CccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          327 LSCSLDKTIKVWFATDSGNLEVTYTHNE-EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       327 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      ++|+.|+.|+|||+++++.+..+..+.. ...+..+.|.  ..   .|++++.||.|++||++
T Consensus       254 ~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~--~~---~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         254 ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT--KQ---ALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC--SS---CEEEEETTCCEEEEETT
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEec--CC---EEEEEECCCEEEEEeCC
Confidence            9999999999999998887777665433 2334555443  33   69999999999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.2e-34  Score=263.80  Aligned_cols=280  Identities=20%  Similarity=0.312  Sum_probs=218.2

Q ss_pred             eeecceEEeeEecCc-EEEecCCCeEEEEECCCCcEEEEEec------------------CCcCCEEEEEecCCCCEEEE
Q 016224          107 VIKTDILCRNWVQGN-CMYGEKCKFLHSWTVGDGFKLLTQLE------------------GHQKVVSGITLPSGSDKLYS  167 (393)
Q Consensus       107 ~~~~~i~c~~~~~~~-~~~g~~dg~i~vwd~~~~~~~~~~l~------------------~h~~~I~~i~~s~~~~~l~s  167 (393)
                      .|...|+|++|++++ +++.+.|+.|+|||+.++ +.+..+.                  .|...|++|+|+|++++|++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDG-SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTC-CEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCeEEEEEeccc-ceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            588899999999874 444335999999999987 5655554                  46677999999999999999


Q ss_pred             EeCCCcEEEEECCCCeEEEEEecCC-ceEEEE--eCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---
Q 016224          168 GSKDETVRVWDCASGQCAGVINLGG-EVGCMI--SEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---  240 (393)
Q Consensus       168 ~s~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~--~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---  240 (393)
                      |+.||.|++||..+++.+..+..+. .+..+.  .++..++++ .++.+++||..+........+......+.+.+.   
T Consensus       139 ~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (388)
T d1erja_         139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK  218 (388)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCC
Confidence            9999999999999999988887543 444433  456666654 788999999999888866566666666666553   


Q ss_pred             EEEEEeCCCcEEEEEeccCCcccc---CceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcce----------
Q 016224          241 LLFAGTQDGAILAWKFNVTTNCFE---PAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQC----------  305 (393)
Q Consensus       241 ~l~~~~~dg~I~vwd~~~~~~~~~---~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~----------  305 (393)
                      +|++++.|+.|++||+........   ......+|...|.++.++  +++|++++.|+.|++||+++++.          
T Consensus       219 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  298 (388)
T d1erja_         219 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG  298 (388)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------
T ss_pred             eEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccccc
Confidence            899999999999999987643211   122345688899999986  56999999999999999976443          


Q ss_pred             --eeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeC---CCCCcEEEEEeC
Q 016224          306 --IQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD---SEGKPVLLCSCN  378 (393)
Q Consensus       306 --~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~l~s~s~  378 (393)
                        ......|...|.+++|+  +++|++|+.||.|++||+.+++.+..+..|...  |.++++.+.   ++++.+|+||+.
T Consensus       299 ~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~--V~~~~~~~~~~~spd~~~l~s~s~  376 (388)
T d1erja_         299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS--VISVAVANGSSLGPEYNVFATGSG  376 (388)
T ss_dssp             CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEEECSSCTTCTTCEEEEEEET
T ss_pred             ceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCC--EEEEEEecCcccCCCCCEEEEEeC
Confidence              34556788899999998  679999999999999999999988888877654  777776542   345569999999


Q ss_pred             CCeEEEEeCCc
Q 016224          379 DNSVRFYDLPS  389 (393)
Q Consensus       379 dg~I~iwd~~s  389 (393)
                      ||+|+||+++.
T Consensus       377 Dg~I~iW~~~k  387 (388)
T d1erja_         377 DCKARIWKYKK  387 (388)
T ss_dssp             TSEEEEEEEEE
T ss_pred             CCEEEEEeeee
Confidence            99999999853

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-33  Score=252.50  Aligned_cols=274  Identities=26%  Similarity=0.413  Sum_probs=227.3

Q ss_pred             eeecce-EEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEE
Q 016224          107 VIKTDI-LCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA  185 (393)
Q Consensus       107 ~~~~~i-~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  185 (393)
                      .|...| .|+.+..+.+++|+.||+|+|||+.++ ++++++.+|...|.+++|+++  +|++++.|+++++|+.......
T Consensus        14 GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~-~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~   90 (342)
T d2ovrb2          14 GHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTG-KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECI   90 (342)
T ss_dssp             CSTTSCEEEEEEETTEEEEEETTSCEEEEETTTC-CEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEE
T ss_pred             CcCCceEEEEEECCCEEEEEeCCCeEEEEECCCC-CEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccce
Confidence            566665 578888888889999999999999998 899999999999999999874  9999999999999999988877


Q ss_pred             EEEecCCce-EEEEeCCC-EEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCcc
Q 016224          186 GVINLGGEV-GCMISEGP-WIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNC  262 (393)
Q Consensus       186 ~~~~~~~~~-~~~~~~~~-~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~  262 (393)
                      ......... ........ ......++.+.+|+..+++.. .+................+++++.|+.|++||+...   
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~---  167 (342)
T d2ovrb2          91 HTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE---  167 (342)
T ss_dssp             EEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT---
T ss_pred             ecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccc---
Confidence            766655443 33333444 444568899999999998877 444445555555555669999999999999999876   


Q ss_pred             ccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCC
Q 016224          263 FEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATD  342 (393)
Q Consensus       263 ~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~  342 (393)
                       .....+.+|...+..+.+++.+|++++.|+.|++||+++++++..+..|...+.++.+++++|++++.|+.|++||+..
T Consensus       168 -~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~  246 (342)
T d2ovrb2         168 -TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKT  246 (342)
T ss_dssp             -EEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred             -eeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEeccc
Confidence             5567788899999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CcceEEEEeecC-CccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          343 SGNLEVTYTHNE-EHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       343 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      .+....+..+.. ...+.++.+.  +.   ++++++.||.|++||++++++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~s~s~Dg~i~iwd~~tg~~  292 (342)
T d2ovrb2         247 GQCLQTLQGPNKHQSAVTCLQFN--KN---FVITSSDDGTVKLWDLKTGEF  292 (342)
T ss_dssp             CCEEEEECSTTSCSSCEEEEEEC--SS---EEEEEETTSEEEEEETTTCCE
T ss_pred             ccccccccccceeeeceeecccC--CC---eeEEEcCCCEEEEEECCCCCE
Confidence            777666654332 3345555543  22   899999999999999998864

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-33  Score=256.43  Aligned_cols=271  Identities=26%  Similarity=0.419  Sum_probs=214.7

Q ss_pred             eecc-eEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224          108 IKTD-ILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAG  186 (393)
Q Consensus       108 ~~~~-i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  186 (393)
                      |... ++|+.+..+.+++|+.||+|+|||+.++ +++.++++|.++|++|+|+++ .+|++|+.|++|++|++...+...
T Consensus        11 H~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~-~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~   88 (355)
T d1nexb2          11 HMTSVITCLQFEDNYVITGADDKMIRVYDSINK-KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTH   88 (355)
T ss_dssp             CSSSCEEEEEEETTEEEEEETTTEEEEEETTTT-EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEE
T ss_pred             cCCCcEEEEEECCCEEEEEeCCCeEEEEECCCC-cEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccc
Confidence            5454 6899998888889999999999999998 999999999999999999985 589999999999999999998887


Q ss_pred             EEecCCceEE-----EEeCCCEEEE-EcCCeEEEEECCCCcee------------------------eecCCCCcEEEEE
Q 016224          187 VINLGGEVGC-----MISEGPWIFI-GVTNFVKAWNTQTNTDL------------------------SLSGPVGQVYAMA  236 (393)
Q Consensus       187 ~~~~~~~~~~-----~~~~~~~l~~-~~~~~i~v~d~~~~~~~------------------------~~~~~~~~v~~l~  236 (393)
                      ..........     ..+++..+++ +.|+.|++|++.+....                        ....|...+....
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  168 (355)
T d1nexb2          89 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS  168 (355)
T ss_dssp             EECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEE
T ss_pred             ccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccc
Confidence            7765543221     2245566665 48899999999876532                        2233455667777


Q ss_pred             EeCCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCcc
Q 016224          237 VGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTS  314 (393)
Q Consensus       237 ~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  314 (393)
                      .++++++++..|+.|++||+...    +.......+...+.++.++  ++++++++.|+.|++||++++.++..+.+|..
T Consensus       169 ~~~~~~~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~  244 (355)
T d1nexb2         169 GHGNIVVSGSYDNTLIVWDVAQM----KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA  244 (355)
T ss_dssp             EETTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             cccceeeeecccceeeeeecccc----cceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccc
Confidence            77889999999999999999876    4455666677777777765  67999999999999999999999999999999


Q ss_pred             ceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEe-eeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          315 VVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCG-MPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       315 ~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      .|.++.+++++|++++.||.|++||+.+....  +..|...  +..+.+ .++.   .+|++| .|+.|+|||++++++
T Consensus       245 ~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~--~~~~~~~~~~~---~~l~~g-~d~~i~vwd~~tg~~  315 (355)
T d1nexb2         245 LVGLLRLSDKFLVSAAADGSIRGWDANDYSRK--FSYHHTN--LSAITTFYVSD---NILVSG-SENQFNIYNLRSGKL  315 (355)
T ss_dssp             CCCEEEECSSEEEEECTTSEEEEEETTTCCEE--EEEECTT--CCCCCEEEECS---SEEEEE-ETTEEEEEETTTCCB
T ss_pred             cccccccccceeeeeeccccccccccccccee--cccccCC--ceEEEEEcCCC---CEEEEE-eCCEEEEEECCCCCE
Confidence            99999999999999999999999999876543  3334333  333433 3333   255555 589999999999875

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.3e-33  Score=252.00  Aligned_cols=270  Identities=15%  Similarity=0.208  Sum_probs=225.5

Q ss_pred             eeecceEEeeEecCc--EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-
Q 016224          107 VIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ-  183 (393)
Q Consensus       107 ~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~-  183 (393)
                      .|..+|+|++|++++  +++|+.||.|+|||+.++ +.+..+..|...|.+++|+|++++|++++.|+.+++|+..... 
T Consensus        53 GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~  131 (340)
T d1tbga_          53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT-NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG  131 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT-EEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCS
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCceeeeecccc-eeEEEEecccccEEeeEeeccceeeeeecccceeeccccccccc
Confidence            588899999999774  668999999999999998 8899999999999999999999999999999999999976543 


Q ss_pred             ---EEEEEecCCceEE--EE-eCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEE
Q 016224          184 ---CAGVINLGGEVGC--MI-SEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAW  254 (393)
Q Consensus       184 ---~~~~~~~~~~~~~--~~-~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vw  254 (393)
                         ....+..+.....  .. ..........+.....+........ ....+...+....+.+.  ++++++.|+.|++|
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~  211 (340)
T d1tbga_         132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW  211 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred             ccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEE
Confidence               3344443333222  22 3444444568888888888777665 56677778888888776  89999999999999


Q ss_pred             EeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEec--cCccceEEEEEc--CCEEEE
Q 016224          255 KFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLT--EHTSVVMSLLCW--DQFLLS  328 (393)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~--~~~l~s  328 (393)
                      |+++.    ++...+.+|...|.+++++  +++|++++.|+.|++||++..+.+..+.  .+...+.++.|+  +++|++
T Consensus       212 d~~~~----~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  287 (340)
T d1tbga_         212 DVREG----MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA  287 (340)
T ss_dssp             ETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEE
T ss_pred             ECCCC----cEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEE
Confidence            99876    5677788999999999986  5699999999999999999988877664  566779999998  679999


Q ss_pred             EeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          329 CSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       329 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                      |+.||.|++||+.+++.+..+..|..  .|.+++|+|++.   +|++|+.||.|+|||
T Consensus       288 g~~dg~i~iwd~~~~~~~~~~~~H~~--~V~~l~~s~d~~---~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         288 GYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGM---AVATGSWDSFLKIWN  340 (340)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSS---CEEEEETTSCEEEEC
T ss_pred             EECCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCC---EEEEEccCCEEEEeC
Confidence            99999999999999888887777654  599999988765   899999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-33  Score=260.62  Aligned_cols=284  Identities=12%  Similarity=0.152  Sum_probs=219.3

Q ss_pred             eeecceEEeeEecCc--EEEecCCCeEEEEECCCC-cEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe
Q 016224          107 VIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ  183 (393)
Q Consensus       107 ~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~  183 (393)
                      ....||+|++|++++  +++|+.|+.|+|||+.++ ...+..+++|.++|++|+|+|++++|++++.|++|+|||+.+++
T Consensus         5 ~~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           5 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc
Confidence            344689999999874  447999999999999865 34678899999999999999999999999999999999999887


Q ss_pred             EEEEEec---CCceEEE--EeCCCEEEEE-cCCeEEEEECCCCcee-----eecCCCCcEEEEEEeCC--EEEEEeCCCc
Q 016224          184 CAGVINL---GGEVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTDL-----SLSGPVGQVYAMAVGND--LLFAGTQDGA  250 (393)
Q Consensus       184 ~~~~~~~---~~~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~~-----~~~~~~~~v~~l~~~~~--~l~~~~~dg~  250 (393)
                      ....+..   ...+.++  .++++.++++ .++.|++|++......     ....|...|.+++|+|+  +|++++.|+.
T Consensus        85 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~  164 (371)
T d1k8kc_          85 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK  164 (371)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence            6655543   2345444  3678887776 7889999988765432     45578899999999998  9999999999


Q ss_pred             EEEEEeccCCcc--------------ccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCcc
Q 016224          251 ILAWKFNVTTNC--------------FEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTS  314 (393)
Q Consensus       251 I~vwd~~~~~~~--------------~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  314 (393)
                      |++|++......              .........|...|.+++|+  +++|++++.|+.|++||+++++.+.++..|..
T Consensus       165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  244 (371)
T d1k8kc_         165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL  244 (371)
T ss_dssp             EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred             EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccc
Confidence            999998654321              12234456788889999886  56999999999999999999999999999999


Q ss_pred             ceEEEEEc-CCEEEEEeCCCcEEEEEcCCCcceEEEEe---------------------------------------ecC
Q 016224          315 VVMSLLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYT---------------------------------------HNE  354 (393)
Q Consensus       315 ~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------------------------------------~~~  354 (393)
                      +|.+++|+ +..+++++.|+.+++|..........+..                                       ..+
T Consensus       245 ~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H  324 (371)
T d1k8kc_         245 PLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLH  324 (371)
T ss_dssp             CEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSS
T ss_pred             cceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccc
Confidence            99999998 34555566688887776543221111100                                       012


Q ss_pred             CccEEEEEeeeCCCCC-cEEEEEeCCCeEEEEeCCce
Q 016224          355 EHGVLALCGMPDSEGK-PVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       355 ~~~v~~~~~~~~~~~~-~~l~s~s~dg~I~iwd~~s~  390 (393)
                      ...+.++++.+..... ..|+|++.||.|+|||+++.
T Consensus       325 ~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~  361 (371)
T d1k8kc_         325 KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  361 (371)
T ss_dssp             SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             cCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence            3458888888865433 36899999999999998653

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.2e-33  Score=249.58  Aligned_cols=272  Identities=15%  Similarity=0.222  Sum_probs=208.0

Q ss_pred             cceeecceEEeeEecC--cEEEecCCCeEEEEECCCCcEEEEEe-cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 016224          105 RAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQL-EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS  181 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l-~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~  181 (393)
                      ...|..+|+|++|+++  .+++|+.||+|++||+.++ +.++.+ .+|...|++++|+|+++ +++++.|+.+++|+...
T Consensus         8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~-~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~   85 (299)
T d1nr0a2           8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG-ISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGG   85 (299)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSS
T ss_pred             cCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccCC
Confidence            3458889999999987  4668999999999999998 666766 47999999999999986 56677899999999765


Q ss_pred             CeE----EEEEecCCce--EEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEE
Q 016224          182 GQC----AGVINLGGEV--GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILA  253 (393)
Q Consensus       182 ~~~----~~~~~~~~~~--~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~v  253 (393)
                      ...    .........+  ..+.+++.+++++.++.+.+|+......   ......+.+++++++  +|++++.|+.|++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~  162 (299)
T d1nr0a2          86 SGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTE---VPISYNSSCVALSNDKQFVAVGGQDSKVHV  162 (299)
T ss_dssp             SSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEE---EECSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccc
Confidence            321    1111222333  2334688889999999999999553322   223456788999887  8999999999999


Q ss_pred             EEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCccee---eEeccCccceEEEEEc--CCEE
Q 016224          254 WKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCI---QTLTEHTSVVMSLLCW--DQFL  326 (393)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~l~~~--~~~l  326 (393)
                      ||++....   .......|...|.+++++  +++|++++.|+.|++||+.++..+   ..+..|...|++++|+  +++|
T Consensus       163 ~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  239 (299)
T d1nr0a2         163 YKLSGASV---SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL  239 (299)
T ss_dssp             EEEETTEE---EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEE
T ss_pred             cccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccce
Confidence            99987632   122344678899999986  568999999999999999876554   4556789999999998  6799


Q ss_pred             EEEeCCCcEEEEEcCCCcceEEEEeecCC-ccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          327 LSCSLDKTIKVWFATDSGNLEVTYTHNEE-HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       327 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      ++|+.|+.|+|||+++...........+. ..+..+.+ ++..   +|++++.|++|++||++
T Consensus       240 ~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~---~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNET---TIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETT---EEEEEETTSCEEEEECC
T ss_pred             EEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCC---EEEEEeCCCEEEEEecc
Confidence            99999999999999877655544443333 33444544 4443   89999999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.3e-31  Score=239.60  Aligned_cols=238  Identities=18%  Similarity=0.195  Sum_probs=195.0

Q ss_pred             ccceeecceEEeeEecCc--EEEecCCCeEEEEECCCCc-EEEEEecCCcCCEEEEEecCCCCEEEEEeC--CCcEEEEE
Q 016224          104 NRAVIKTDILCRNWVQGN--CMYGEKCKFLHSWTVGDGF-KLLTQLEGHQKVVSGITLPSGSDKLYSGSK--DETVRVWD  178 (393)
Q Consensus       104 ~~~~~~~~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~-~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~--dg~v~iwd  178 (393)
                      ....|...|+|++|++++  +++|+.||+|+|||+.++. .....+..|..+|.+++|+|++++|++++.  +..++||+
T Consensus        53 ~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~  132 (311)
T d1nr0a1          53 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL  132 (311)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred             EEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccc
Confidence            345688899999999874  5579999999999998763 344678899999999999999999999986  45699999


Q ss_pred             CCCCeEEEEEecCC-ceEEE--EeCCCE-EEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCc
Q 016224          179 CASGQCAGVINLGG-EVGCM--ISEGPW-IFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGA  250 (393)
Q Consensus       179 ~~~~~~~~~~~~~~-~~~~~--~~~~~~-l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~  250 (393)
                      +++++....+..+. .+.++  .+++++ ++++ .|+.|++||+++++.. ....|...|.++.++|+  +|++++.|+.
T Consensus       133 ~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~  212 (311)
T d1nr0a1         133 FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT  212 (311)
T ss_dssp             TTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccccccccc
Confidence            99998877776543 34444  345654 5544 7899999999998877 67789999999999988  9999999999


Q ss_pred             EEEEEeccCCccc---cCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCc---cceEEEEEc
Q 016224          251 ILAWKFNVTTNCF---EPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHT---SVVMSLLCW  322 (393)
Q Consensus       251 I~vwd~~~~~~~~---~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~l~~~  322 (393)
                      |++||+.......   .......+|...|.+++|+  +++|++|+.|+.|+|||++++++++++..|.   ..+.++.++
T Consensus       213 v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~  292 (311)
T d1nr0a1         213 IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT  292 (311)
T ss_dssp             EEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC
T ss_pred             ccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEec
Confidence            9999998764321   1122345688999999996  5799999999999999999999999997664   356788888


Q ss_pred             CCEEEEEeCCCcEEEEEcC
Q 016224          323 DQFLLSCSLDKTIKVWFAT  341 (393)
Q Consensus       323 ~~~l~s~s~dg~i~iwd~~  341 (393)
                      +++|++++.||.|++||++
T Consensus       293 ~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         293 KQALVSISANGFINFVNPE  311 (311)
T ss_dssp             SSCEEEEETTCCEEEEETT
T ss_pred             CCEEEEEECCCEEEEEeCC
Confidence            9999999999999999973

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.1e-31  Score=237.80  Aligned_cols=274  Identities=17%  Similarity=0.223  Sum_probs=204.9

Q ss_pred             ceEEeeEecCc--EEEecCC-CeEEEEECCCC-cEEEEEecCC-cCCEEEEEecC--CCCEEEEEeCCCcEEEEECCCCe
Q 016224          111 DILCRNWVQGN--CMYGEKC-KFLHSWTVGDG-FKLLTQLEGH-QKVVSGITLPS--GSDKLYSGSKDETVRVWDCASGQ  183 (393)
Q Consensus       111 ~i~c~~~~~~~--~~~g~~d-g~i~vwd~~~~-~~~~~~l~~h-~~~I~~i~~s~--~~~~l~s~s~dg~v~iwd~~~~~  183 (393)
                      .++++.|++.+  +++++.+ ..|+.|+.... ...+..+.+| ...|++++|+|  ++++|++|+.||+|+|||+..++
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            34788888653  3344433 34566765432 2456677887 47899999997  56899999999999999987543


Q ss_pred             EEEE--------Ee-cCCceEEE--EeCCCEEEEE---cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC---EEEEE
Q 016224          184 CAGV--------IN-LGGEVGCM--ISEGPWIFIG---VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND---LLFAG  245 (393)
Q Consensus       184 ~~~~--------~~-~~~~~~~~--~~~~~~l~~~---~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~---~l~~~  245 (393)
                      ....        +. +...+..+  .++++.++++   .++.+.+|+..+++.+ .+.+|...|.+++|+++   +++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  178 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV  178 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred             ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEe
Confidence            2211        12 22344443  3577777664   3568999999988876 77889999999999887   68889


Q ss_pred             eCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc---CCEEEEecCCCcEEEeeCCCcceeeEeccCccceE----E
Q 016224          246 TQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG---ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVM----S  318 (393)
Q Consensus       246 ~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~----~  318 (393)
                      +.|+.|++||+...... ........|...|.+++|+   +.+|++++.|+.|++||+++++.+.++.+|...+.    +
T Consensus       179 ~~d~~v~~~d~~~~~~~-~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s  257 (325)
T d1pgua1         179 GDDGSVVFYQGPPFKFS-ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA  257 (325)
T ss_dssp             ETTTEEEEEETTTBEEE-EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred             ecccccccccccccccc-eecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceee
Confidence            99999999998765321 2223345678889999996   35899999999999999999999999998887764    4


Q ss_pred             EEEc-CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          319 LLCW-DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       319 l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      +.+. +++|++++.|+.|+|||+++++.+..+..+.....+..+++.+...  .+|++++.||.|++||+
T Consensus       258 ~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN--GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET--TEEEEEETTSCEEEEET
T ss_pred             eeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCC--CEEEEEECCCEEEEEEC
Confidence            4444 6799999999999999999888888777776665555454444322  27999999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6.2e-29  Score=223.91  Aligned_cols=274  Identities=24%  Similarity=0.373  Sum_probs=230.8

Q ss_pred             ceeecceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEE
Q 016224          106 AVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCA  185 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  185 (393)
                      ..|...|.++.|+++.+++|+.|+.+++|+.... ........+...+......  ...++.+..|+.+.+|+..+++..
T Consensus        54 ~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~  130 (342)
T d2ovrb2          54 VGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG-ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCL  130 (342)
T ss_dssp             CCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEE
T ss_pred             eCCCCCEEEEEeCCCccccceecccccccccccc-cceecccccceeEeeeecc--cccccccccceeEEEeecccccce
Confidence            4577899999999998999999999999999887 6777777777888776665  457889999999999999999888


Q ss_pred             EEEecCCceEE-EEe-CCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCcc
Q 016224          186 GVINLGGEVGC-MIS-EGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNC  262 (393)
Q Consensus       186 ~~~~~~~~~~~-~~~-~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~  262 (393)
                      ..+........ ... ...++..+.++.|++||......+ .+.+|...+..+.+++..|++++.||.|++||++..   
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~---  207 (342)
T d2ovrb2         131 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG---  207 (342)
T ss_dssp             EEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTC---
T ss_pred             eeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccc---
Confidence            77766544333 333 445555668999999999988876 778899999999999889999999999999999876   


Q ss_pred             ccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEecc---CccceEEEEEcCCEEEEEeCCCcEEEEE
Q 016224          263 FEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTE---HTSVVMSLLCWDQFLLSCSLDKTIKVWF  339 (393)
Q Consensus       263 ~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~~~~~l~s~s~dg~i~iwd  339 (393)
                       +.+..+..|...+.++++++++|++++.|+.|++||+...+....+..   |...+.++.++++++++++.||+|+|||
T Consensus       208 -~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd  286 (342)
T d2ovrb2         208 -NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWD  286 (342)
T ss_dssp             -CEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEE
T ss_pred             -eeeeEecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEE
Confidence             556778889999999999999999999999999999999888777764   6678899999999999999999999999


Q ss_pred             cCCCcceEEEEee---cCCccEEEEEeeeCCCCCcEEEEEeCCCe----EEEEeCCc
Q 016224          340 ATDSGNLEVTYTH---NEEHGVLALCGMPDSEGKPVLLCSCNDNS----VRFYDLPS  389 (393)
Q Consensus       340 ~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~l~s~s~dg~----I~iwd~~s  389 (393)
                      +++++.+..+...   .+...|.+++|+|+..   +|++|+.||+    |++||+..
T Consensus       287 ~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~---~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         287 LKTGEFIRNLVTLESGGSGGVVWRIRASNTKL---VCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             TTTCCEEEEEEECTTGGGTCEEEEEEECSSEE---EEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCCCEEEEEecccCCCCCCCEEEEEECCCCC---EEEEEeCCCCCeeEEEEEeCCC
Confidence            9998887766542   2334589999988655   9999999985    99999864

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=8.2e-30  Score=227.03  Aligned_cols=242  Identities=23%  Similarity=0.328  Sum_probs=208.8

Q ss_pred             EEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-ceEEEE--eCCCEEEEE-cCCeEEEEEC
Q 016224          142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG-EVGCMI--SEGPWIFIG-VTNFVKAWNT  217 (393)
Q Consensus       142 ~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~--~~~~~l~~~-~~~~i~v~d~  217 (393)
                      ...+|++|+++|++|+|+|++++|+||+.||+|+|||+.+++.+.++..+. .+.++.  +++.+++.+ .++.+.+|+.
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF   88 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence            345789999999999999999999999999999999999999999987643 444433  577777765 6778999998


Q ss_pred             CCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCC
Q 016224          218 QTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMD  292 (393)
Q Consensus       218 ~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~d  292 (393)
                      ...+.. .+..+...+.++.++++  .+++++.|+.+++||+++.    .....+..|...+.+++++  +++|++++.|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  164 (317)
T d1vyhc1          89 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG----YCVKTFTGHREWVRMVRPNQDGTLIASCSND  164 (317)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccceeeeccCCCceEEeeccCcceeEeecccc----eeeeEEccCCCcceeeecccCCCEEEEEeCC
Confidence            887766 67788999999999987  8999999999999999887    4567778888899999886  5699999999


Q ss_pred             CcEEEeeCCCcceeeEeccCccceEEEEEcC----------------------CEEEEEeCCCcEEEEEcCCCcceEEEE
Q 016224          293 NSIRVWNLETLQCIQTLTEHTSVVMSLLCWD----------------------QFLLSCSLDKTIKVWFATDSGNLEVTY  350 (393)
Q Consensus       293 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~----------------------~~l~s~s~dg~i~iwd~~~~~~~~~~~  350 (393)
                      +.|++|++.+++.+..+..|...+.++.+.+                      .++++++.|+.|++||++++..+..+.
T Consensus       165 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~  244 (317)
T d1vyhc1         165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV  244 (317)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEe
Confidence            9999999999999999999999999888752                      479999999999999999888877777


Q ss_pred             eecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          351 THNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       351 ~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      .|..  .+.+++++|++.   +|++++.||.|++||++++++
T Consensus       245 ~~~~--~v~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~  281 (317)
T d1vyhc1         245 GHDN--WVRGVLFHSGGK---FILSCADDKTLRVWDYKNKRC  281 (317)
T ss_dssp             CCSS--CEEEEEECSSSS---CEEEEETTTEEEEECCTTSCC
T ss_pred             CCCC--CEEEEEECCCCC---EEEEEECCCeEEEEECCCCcE
Confidence            6554  589999988765   899999999999999998764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.9e-29  Score=229.25  Aligned_cols=239  Identities=21%  Similarity=0.372  Sum_probs=195.3

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE---EEEEe---cCCceEEE--EeCCCEEEEE-cCCe
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC---AGVIN---LGGEVGCM--ISEGPWIFIG-VTNF  211 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~---~~~~~---~~~~~~~~--~~~~~~l~~~-~~~~  211 (393)
                      +.++++ .|...|++|+|+|++++|+||+ ||.|+|||+.++..   +....   +...+.++  .+++++|+++ .|+.
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~  120 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST  120 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred             eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence            556666 6999999999999999999987 89999999976532   22222   23445443  4688888765 8899


Q ss_pred             EEEEECCCCcee---eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CC
Q 016224          212 VKAWNTQTNTDL---SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--AN  284 (393)
Q Consensus       212 i~v~d~~~~~~~---~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~  284 (393)
                      |++||+......   .+..|...+..+.++++  ++++++.|+.|++|++.+.    +.......|...+.+++++  ++
T Consensus       121 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~----~~~~~~~~~~~~v~~l~~s~~~~  196 (337)
T d1gxra_         121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISNDGT  196 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccc
Confidence            999998765432   66788999999999988  8999999999999999876    5566777889999999985  56


Q ss_pred             EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEE
Q 016224          285 KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALC  362 (393)
Q Consensus       285 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  362 (393)
                      ++++++.|+.|++||+++++.+..+. |...|.+++++  +++|++++.|+.|++||+++.... ...  .+...+..++
T Consensus       197 ~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~--~~~~~i~~v~  272 (337)
T d1gxra_         197 KLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH--LHESCVLSLK  272 (337)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EEC--CCSSCEEEEE
T ss_pred             ccccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccc-ccc--ccccccceEE
Confidence            89999999999999999999888775 78899999997  679999999999999999876543 223  3345699999


Q ss_pred             eeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          363 GMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       363 ~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      |+|++.   +|++++.||.|++||+++++.
T Consensus       273 ~s~~g~---~l~s~s~Dg~i~iwd~~~~~~  299 (337)
T d1gxra_         273 FAYCGK---WFVSTGKDNLLNAWRTPYGAS  299 (337)
T ss_dssp             ECTTSS---EEEEEETTSEEEEEETTTCCE
T ss_pred             ECCCCC---EEEEEeCCCeEEEEECCCCCE
Confidence            988765   999999999999999998764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.3e-29  Score=232.24  Aligned_cols=260  Identities=19%  Similarity=0.325  Sum_probs=196.9

Q ss_pred             EecCCCeEEEEECCCCcE---EEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--------
Q 016224          124 YGEKCKFLHSWTVGDGFK---LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG--------  192 (393)
Q Consensus       124 ~g~~dg~i~vwd~~~~~~---~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--------  192 (393)
                      .+..++.+.+|+......   .+....+|++.|++|+|+|+|++||+|+ |++|+|||+.+++.+..+....        
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~  111 (388)
T d1erja_          33 KKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPEN  111 (388)
T ss_dssp             EEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC----------
T ss_pred             ccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccc
Confidence            345566777888653311   2223336999999999999999999986 8999999999998887765321        


Q ss_pred             -----------ceEE--EEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEE
Q 016224          193 -----------EVGC--MISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWK  255 (393)
Q Consensus       193 -----------~~~~--~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd  255 (393)
                                 .+.+  +.+++++|+++ .|+.|++|+...++.. ...+|...|.++.++++  .+++++.++.|++||
T Consensus       112 ~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d  191 (388)
T d1erja_         112 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD  191 (388)
T ss_dssp             -------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeee
Confidence                       1333  33578888765 8899999999998877 77789999999999987  899999999999999


Q ss_pred             eccCCccccCceeecCceeeEEEEEE---cCCEEEEecCCCcEEEeeCCCcceeeEec-------cCccceEEEEEc--C
Q 016224          256 FNVTTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCIQTLT-------EHTSVVMSLLCW--D  323 (393)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~l~~~--~  323 (393)
                      +....    .......+... ..+.+   ++++|++++.|+.|++||++++..+..+.       +|...|.++.|+  +
T Consensus       192 ~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~  266 (388)
T d1erja_         192 LRTGQ----CSLTLSIEDGV-TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG  266 (388)
T ss_dssp             TTTTE----EEEEEECSSCE-EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS
T ss_pred             ccccc----ccccccccccc-ccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCC
Confidence            98753    33333333333 33343   36799999999999999999988776653       578899999998  6


Q ss_pred             CEEEEEeCCCcEEEEEcCCCcceEE----------EEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          324 QFLLSCSLDKTIKVWFATDSGNLEV----------TYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       324 ~~l~s~s~dg~i~iwd~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      ++|++++.|+.|++||+.+......          .....+...+.+++|+|++.   +|++|+.||.|++||++++++
T Consensus       267 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~sg~~dg~i~vwd~~~~~~  342 (388)
T d1erja_         267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE---YILSGSKDRGVLFWDKKSGNP  342 (388)
T ss_dssp             SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC---EEEEEETTSEEEEEETTTCCE
T ss_pred             CEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCC---EEEEEeCCCEEEEEECCCCcE
Confidence            7999999999999999976543221          11223345689999988766   999999999999999998764

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=5.8e-30  Score=228.19  Aligned_cols=241  Identities=15%  Similarity=0.180  Sum_probs=188.5

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEec--CCceEEE--EeCCCEEEEEcCCeEEEEE
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL--GGEVGCM--ISEGPWIFIGVTNFVKAWN  216 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~--~~~~~~~--~~~~~~l~~~~~~~i~v~d  216 (393)
                      ++.+.++||.++|++|+|+|++++|+||+.||+|++||+++++.+..+..  ...+.++  .+++.+++++.|+.+++|+
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~   82 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVP   82 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEEC
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEec
Confidence            67889999999999999999999999999999999999999998887742  3345444  3678888899999999999


Q ss_pred             CCCCcee----eecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecC
Q 016224          217 TQTNTDL----SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSM  291 (393)
Q Consensus       217 ~~~~~~~----~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~  291 (393)
                      .......    ....+...+.++.++++ .+++++.++.+.+|+....      ......+.....++..++++|++++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~s~~~~~l~~g~~  156 (299)
T d1nr0a2          83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL------TEVPISYNSSCVALSNDKQFVAVGGQ  156 (299)
T ss_dssp             SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE------EEEECSSCEEEEEECTTSCEEEEEET
T ss_pred             cCCccccccccccccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccc
Confidence            8765432    33456778999999988 5555566788999985432      22233344444444445779999999


Q ss_pred             CCcEEEeeCCCcceee-EeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEee-cCCccEEEEEeeeCC
Q 016224          292 DNSIRVWNLETLQCIQ-TLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTH-NEEHGVLALCGMPDS  367 (393)
Q Consensus       292 dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~  367 (393)
                      |+.|++||+++++... ....|...|.+++++  +++|++++.|+.|++||+.+.......... .+...+.+++|+|++
T Consensus       157 dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~  236 (299)
T d1nr0a2         157 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN  236 (299)
T ss_dssp             TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999998877544 345688999999998  679999999999999999876554333221 234568999998876


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCce
Q 016224          368 EGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       368 ~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      .   +|++|+.||.|++||+.++
T Consensus       237 ~---~l~sgs~dg~i~iwd~~~~  256 (299)
T d1nr0a2         237 V---RLATGSLDNSVIVWNMNKP  256 (299)
T ss_dssp             S---EEEEEETTSCEEEEETTCT
T ss_pred             c---ceEEEcCCCEEEEEECCCC
Confidence            6   9999999999999999865

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.7e-30  Score=229.15  Aligned_cols=259  Identities=13%  Similarity=0.136  Sum_probs=202.8

Q ss_pred             cceeecceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 016224          105 RAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC  184 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~  184 (393)
                      ...|..+|+|++|++  +++|+.||+|++||+.++      .++|...|.+++++++ ..+++++.|++|++|++...+ 
T Consensus         9 l~gH~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~------~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~~~-   78 (287)
T d1pgua2           9 ISGHNKGITALTVNP--LISGSYDGRIMEWSSSSM------HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKHE-   78 (287)
T ss_dssp             ECCCSSCEEEEETTT--TEEEETTSCEEETTTTEE------ECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEEEE-
T ss_pred             ECCCCCceEEEEECc--EEEEeCCCeEEEEECCCC------CCCCCCCEEEEEecCC-CeEEEEeeccccccccccccc-
Confidence            345888999999986  899999999999998764      3689999999999876 468999999999999975432 


Q ss_pred             EEEEecCCce--EEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCC-cEEEEEeccCCc
Q 016224          185 AGVINLGGEV--GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDG-AILAWKFNVTTN  261 (393)
Q Consensus       185 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg-~I~vwd~~~~~~  261 (393)
                           ....+  .....++..++++.++.+.+|+..+++..........+.++..+++.+++++.++ .|++|++.....
T Consensus        79 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~  153 (287)
T d1pgua2          79 -----FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV  153 (287)
T ss_dssp             -----CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE
T ss_pred             -----cccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccce
Confidence                 22222  2333566777778888999999999988866666677788888878777777665 799999876532


Q ss_pred             cccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceee-EeccCccceEEEEEc------------CCEE
Q 016224          262 CFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQ-TLTEHTSVVMSLLCW------------DQFL  326 (393)
Q Consensus       262 ~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~~------------~~~l  326 (393)
                         .......|...+.+++++  +.+|++|+.||.|++||+.+++.+. .+..|...|.+++|+            +.+|
T Consensus       154 ---~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l  230 (287)
T d1pgua2         154 ---SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLV  230 (287)
T ss_dssp             ---EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEE
T ss_pred             ---eeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCee
Confidence               122223467788888886  5699999999999999999988755 467899999999986            3589


Q ss_pred             EEEeCCCcEEEEEcCCCcceEE-EEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          327 LSCSLDKTIKVWFATDSGNLEV-TYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       327 ~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      ++|+.|++|+|||+++...... +..|.  ..|.++.|+++.    .|++++.|+.|++|++
T Consensus       231 ~sgs~D~~i~iw~~~~~~~~~~~~~~h~--~~V~~v~~~~~~----~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         231 ATGSLDTNIFIYSVKRPMKIIKALNAHK--DGVNNLLWETPS----TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEETTSCEEEEESSCTTCCEEETTSST--TCEEEEEEEETT----EEEEEETTSCEEEEEE
T ss_pred             EeecCCCeEEEEECCCCCeEEEEeCCCC--CCeEEEEECCCC----EEEEEECCCeEEEEEE
Confidence            9999999999999977554333 33343  459999999863    5899999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.9e-28  Score=221.14  Aligned_cols=245  Identities=20%  Similarity=0.303  Sum_probs=202.5

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC-ceEEE--EeCCCEEEEE-cCCeEEEEE
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG-EVGCM--ISEGPWIFIG-VTNFVKAWN  216 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~~~~--~~~~~~l~~~-~~~~i~v~d  216 (393)
                      +..++|++|.+.|++|+|+|++++|+||+.||+|+|||+.+++.+..+..+. .+.++  .+++.+++++ .++.+.+|+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence            6778999999999999999999999999999999999999999999887654 44443  3577887765 888999999


Q ss_pred             CCCCcee-----eecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEE
Q 016224          217 TQTNTDL-----SLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYS  288 (393)
Q Consensus       217 ~~~~~~~-----~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s  288 (393)
                      .......     .+.+|...........+ .++....+.....+.....    ........+...+....+.  ..++++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG----QQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTT----EEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccceecccccccccccccccccccccccccccccccccccc----cccccccccceeEeeeccccccceeEE
Confidence            8765432     55667777777666655 8888889999998887664    3334444555666666654  568999


Q ss_pred             ecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeC
Q 016224          289 GSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD  366 (393)
Q Consensus       289 g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  366 (393)
                      ++.|+.|++||+++++++.++.+|...|++++|+  +++|++++.|+.|++||+........+........+..++|+|+
T Consensus       202 ~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  281 (340)
T d1tbga_         202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS  281 (340)
T ss_dssp             EETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSS
T ss_pred             eecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCC
Confidence            9999999999999999999999999999999998  67999999999999999988877766666666667999999887


Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          367 SEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       367 ~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      +.   +|++|+.||.|++||+.++++
T Consensus       282 ~~---~l~~g~~dg~i~iwd~~~~~~  304 (340)
T d1tbga_         282 GR---LLLAGYDDFNCNVWDALKADR  304 (340)
T ss_dssp             SC---EEEEEETTSCEEEEETTTCCE
T ss_pred             CC---EEEEEECCCEEEEEECCCCcE
Confidence            66   999999999999999998764

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.2e-28  Score=221.41  Aligned_cols=269  Identities=17%  Similarity=0.259  Sum_probs=203.2

Q ss_pred             ceeecceEEeeEecCc-EEEecCCCeEEEEECCCCcEEEEEecCCc--CCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224          106 AVIKTDILCRNWVQGN-CMYGEKCKFLHSWTVGDGFKLLTQLEGHQ--KVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~~-~~~g~~dg~i~vwd~~~~~~~~~~l~~h~--~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      ..|..+|+|++|++++ +++|+.|+.|++|+.... +.......+.  ..+..+.+++++.++++++.|+.|++||+.+.
T Consensus        50 ~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~  128 (355)
T d1nexb2          50 SGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG-CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE  128 (355)
T ss_dssp             ECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTT-EEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-
T ss_pred             ECCCCCEEEEEEcCCCEEEEEeccccccccccccc-ccccccccccccccccccccccccceeeeecCCCcEEEEEccCC
Confidence            4578899999999875 457999999999999987 5555554433  44555667889999999999999999999876


Q ss_pred             eEEEEEec------------------------CCceEEEEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEE
Q 016224          183 QCAGVINL------------------------GGEVGCMISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMA  236 (393)
Q Consensus       183 ~~~~~~~~------------------------~~~~~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~  236 (393)
                      ........                        ...+.....++.+++.+ .++.|++||+.+++.+ ....+...+.++.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~  208 (355)
T d1nexb2         129 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI  208 (355)
T ss_dssp             ----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             ceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecccccccccc
Confidence            55433221                        11223344567777765 7889999999998877 6677888999999


Q ss_pred             EeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEeccCcc
Q 016224          237 VGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTS  314 (393)
Q Consensus       237 ~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~  314 (393)
                      ++++  .+++++.|+.|++||+++.    ..+..+.+|...|.++++++++|++++.||.|++||++++...  +..|..
T Consensus       209 ~~~~~~~~~~~~~d~~i~i~d~~~~----~~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~  282 (355)
T d1nexb2         209 YDHERKRCISASMDTTIRIWDLENG----ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK--FSYHHT  282 (355)
T ss_dssp             EETTTTEEEEEETTSCEEEEETTTC----CEEEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCCEE--EEEECT
T ss_pred             ccccceeeecccccceEEeeecccc----ccccccccccccccccccccceeeeeeccccccccccccccee--cccccC
Confidence            9987  9999999999999999887    5667788999999999999999999999999999999987654  444555


Q ss_pred             ceEEEEE---cCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeC
Q 016224          315 VVMSLLC---WDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       315 ~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~  387 (393)
                      .+.++.+   .+.+|++| .|+.|+|||+++++.+..... .+...|.+++|+|+    .++++++.||+++||-+
T Consensus       283 ~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~-~~~~~V~~v~~~~~----~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         283 NLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANIL-KDADQIWSVNFKGK----TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             TCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTT-TTCSEEEEEEEETT----EEEEEEESSSCEEEEEE
T ss_pred             CceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEec-CCCCCEEEEEEcCC----eEEEEEECCCcEEEEEE
Confidence            5544433   25555554 589999999998876643222 23346899998753    27888999999776654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=6.2e-28  Score=222.28  Aligned_cols=234  Identities=12%  Similarity=0.063  Sum_probs=188.6

Q ss_pred             CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe--EEEEEec-CCceEEE--EeCCCEEEEE-cCCeEEEEECCCCce
Q 016224          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ--CAGVINL-GGEVGCM--ISEGPWIFIG-VTNFVKAWNTQTNTD  222 (393)
Q Consensus       149 h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~-~~~~~~~--~~~~~~l~~~-~~~~i~v~d~~~~~~  222 (393)
                      +.++|+|++|+|++++||+|+.|+.|+|||+.+++  .+..+.. ...+.++  .+++++|+++ .|+.|++||+.++..
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            34789999999999999999999999999998876  4555554 3455554  4688888865 789999999987764


Q ss_pred             e---eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcE
Q 016224          223 L---SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSI  295 (393)
Q Consensus       223 ~---~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i  295 (393)
                      .   .+..|...|.+++|+|+  .|++++.|+.|++|++...............|...|.+++|+  +.+|++|+.|++|
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v  165 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC  165 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE
Confidence            3   55678899999999987  999999999999999987654333445566788999999986  5689999999999


Q ss_pred             EEeeCCCc------------------ceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCC
Q 016224          296 RVWNLETL------------------QCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEE  355 (393)
Q Consensus       296 ~iwd~~~~------------------~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  355 (393)
                      ++||+...                  +.+.....|...|.+++|+  +++|++++.|+.|++||+.+...+..+..+.. 
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-  244 (371)
T d1k8kc_         166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL-  244 (371)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC-
T ss_pred             EEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccc-
Confidence            99998642                  3456667889999999998  67999999999999999998887777766544 


Q ss_pred             ccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          356 HGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       356 ~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                       ++.+++|+|++.   +|++| .|+.+++|...
T Consensus       245 -~v~s~~fs~d~~---~la~g-~d~~~~~~~~~  272 (371)
T d1k8kc_         245 -PLLAVTFITESS---LVAAG-HDCFPVLFTYD  272 (371)
T ss_dssp             -CEEEEEEEETTE---EEEEE-TTSSCEEEEEE
T ss_pred             -cceeeeecCCCC---EEEEE-cCCceEEEEee
Confidence             589999998765   66654 57777776543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.3e-27  Score=207.70  Aligned_cols=239  Identities=25%  Similarity=0.401  Sum_probs=196.4

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-CCceEEEEeCCCEEEEE-cCCeEEEEECC
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINL-GGEVGCMISEGPWIFIG-VTNFVKAWNTQ  218 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~-~~~~i~v~d~~  218 (393)
                      +.+.....|...|+|++|  ++++||||+.||+|+|||+.+++++.++.. ...+.++..++++|+++ .|+.|++|++.
T Consensus         6 ~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESS
T ss_pred             EEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeecccccccccccccc
Confidence            455566788999998765  789999999999999999999999999985 45677888888888875 88999999999


Q ss_pred             CCceee-ecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEE
Q 016224          219 TNTDLS-LSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRV  297 (393)
Q Consensus       219 ~~~~~~-~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~i  297 (393)
                      .+.... .................++++..++.+.+|+....... .....+..|...+..+.+....+++++.|+.|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~  162 (293)
T d1p22a2          84 TGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI-TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKV  162 (293)
T ss_dssp             SCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC-EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEE
T ss_pred             cccccccccccccccccccccccceeecccccceeEeeccccccc-cccccccccccccccceecccccccccCCCceee
Confidence            988773 44444445555555559999999999999998876432 3345566788899999999999999999999999


Q ss_pred             eeCCCcceeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe
Q 016224          298 WNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC  377 (393)
Q Consensus       298 wd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s  377 (393)
                      ||+++++++..+.++...+..+.+++.++++++.|+.|++||+++...+.....+...  +..+  .++   ..+|++++
T Consensus       163 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--v~~~--~~~---~~~l~sg~  235 (293)
T d1p22a2         163 WNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL--VRCI--RFD---NKRIVSGA  235 (293)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSC--EEEE--ECC---SSEEEEEE
T ss_pred             ecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccceeeeeeccccee--eeec--ccc---ceEEEEEc
Confidence            9999999999999999999999999999999999999999999988776665554433  4433  333   34899999


Q ss_pred             CCCeEEEEeCCc
Q 016224          378 NDNSVRFYDLPS  389 (393)
Q Consensus       378 ~dg~I~iwd~~s  389 (393)
                      .||.|++||+.+
T Consensus       236 ~dg~i~iwd~~~  247 (293)
T d1p22a2         236 YDGKIKVWDLVA  247 (293)
T ss_dssp             TTSCEEEEEHHH
T ss_pred             CCCEEEEEECCC
Confidence            999999999754

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.6e-27  Score=217.53  Aligned_cols=283  Identities=16%  Similarity=0.156  Sum_probs=201.9

Q ss_pred             cceeecceEEeeEecCcEEEecCCCeEEEEECCCC-----cEEEEEecCCcCCEEEEEe------cC-CCCEEEEEeCCC
Q 016224          105 RAVIKTDILCRNWVQGNCMYGEKCKFLHSWTVGDG-----FKLLTQLEGHQKVVSGITL------PS-GSDKLYSGSKDE  172 (393)
Q Consensus       105 ~~~~~~~i~c~~~~~~~~~~g~~dg~i~vwd~~~~-----~~~~~~l~~h~~~I~~i~~------s~-~~~~l~s~s~dg  172 (393)
                      ...|+.+|+++++.++.+++++.|++|+|||..+.     .........|...+..+..      +. +..++++++.||
T Consensus        10 ~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg   89 (393)
T d1sq9a_          10 GKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG   89 (393)
T ss_dssp             SSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred             CCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCC
Confidence            34578899999999999999999999999997643     1122333446555444332      11 335788999999


Q ss_pred             cEEEEECCCCeEE---E--EEec------CCce--EEEEe-----CCCEE-EEEcCCeEEEEECCCCce-----------
Q 016224          173 TVRVWDCASGQCA---G--VINL------GGEV--GCMIS-----EGPWI-FIGVTNFVKAWNTQTNTD-----------  222 (393)
Q Consensus       173 ~v~iwd~~~~~~~---~--~~~~------~~~~--~~~~~-----~~~~l-~~~~~~~i~v~d~~~~~~-----------  222 (393)
                      .|++|++......   .  ....      ....  ..+..     .+.++ .++.|+.+++|++.....           
T Consensus        90 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  169 (393)
T d1sq9a_          90 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP  169 (393)
T ss_dssp             CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred             cEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeecc
Confidence            9999997543211   1  1111      0111  12222     13344 456899999999753220           


Q ss_pred             --------eeecCCCCcEEEEEEeCC-EEEEEeCCCcEEEEEeccCCcc--ccCceeecCceeeEEEEEEc--CCEEEEe
Q 016224          223 --------LSLSGPVGQVYAMAVGND-LLFAGTQDGAILAWKFNVTTNC--FEPAASLKGHSLAVVSLVVG--ANKLYSG  289 (393)
Q Consensus       223 --------~~~~~~~~~v~~l~~~~~-~l~~~~~dg~I~vwd~~~~~~~--~~~~~~~~~~~~~v~~l~~~--~~~l~sg  289 (393)
                              .....+...+.+++|+|+ +|++|+.|+.|++||+.+....  ++....+.+|...|.+++|+  +++|++|
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sg  249 (393)
T d1sq9a_         170 TLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA  249 (393)
T ss_dssp             EEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEE
T ss_pred             ceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeee
Confidence                    022344566889999999 9999999999999999876432  23344567899999999986  5699999


Q ss_pred             cCCCc---EEEeeCCCcceeeEec-------------cCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEe
Q 016224          290 SMDNS---IRVWNLETLQCIQTLT-------------EHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYT  351 (393)
Q Consensus       290 ~~dg~---i~iwd~~~~~~~~~~~-------------~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  351 (393)
                      +.|++   |++||+++++++.++.             +|...|++++|+  +++|++++.|++|+|||+.+++.+..+..
T Consensus       250 s~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~g  329 (393)
T d1sq9a_         250 HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNM  329 (393)
T ss_dssp             EEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             cCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECC
Confidence            98874   9999999998888774             799999999998  67999999999999999999988888877


Q ss_pred             ecCC-------------------ccEEEEEeeeCCC-------CCcEEEEEeCCCeEEEEeC
Q 016224          352 HNEE-------------------HGVLALCGMPDSE-------GKPVLLCSCNDNSVRFYDL  387 (393)
Q Consensus       352 ~~~~-------------------~~v~~~~~~~~~~-------~~~~l~s~s~dg~I~iwd~  387 (393)
                      |...                   ..+..+.|.+...       ....|++.+.|+.|++|.-
T Consensus       330 H~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         330 HCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             CGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             cCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEeC
Confidence            6532                   2356677766432       2236899999999999963

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.1e-27  Score=213.61  Aligned_cols=229  Identities=14%  Similarity=0.146  Sum_probs=178.1

Q ss_pred             eecceEEeeEecC----cEEEecCCCeEEEEECCCC-------cEEEEEecCCcCCEEEEEecCCCCEEEEEeC--CCcE
Q 016224          108 IKTDILCRNWVQG----NCMYGEKCKFLHSWTVGDG-------FKLLTQLEGHQKVVSGITLPSGSDKLYSGSK--DETV  174 (393)
Q Consensus       108 ~~~~i~c~~~~~~----~~~~g~~dg~i~vwd~~~~-------~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~--dg~v  174 (393)
                      +...|+|++|+|.    .+++|+.||+|+|||+..+       ......+..|..+|.+++|++++++|++++.  ++.+
T Consensus        62 ~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~  141 (325)
T d1pgua1          62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFG  141 (325)
T ss_dssp             TTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSE
T ss_pred             CCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceE
Confidence            3568999999863    2457999999999998643       1223456789999999999999999988765  6789


Q ss_pred             EEEECCCCeEEEEEecC-CceEEEE--eCCC-EEE-EEcCCeEEEEECCCCcee----eecCCCCcEEEEEEeCC---EE
Q 016224          175 RVWDCASGQCAGVINLG-GEVGCMI--SEGP-WIF-IGVTNFVKAWNTQTNTDL----SLSGPVGQVYAMAVGND---LL  242 (393)
Q Consensus       175 ~iwd~~~~~~~~~~~~~-~~~~~~~--~~~~-~l~-~~~~~~i~v~d~~~~~~~----~~~~~~~~v~~l~~~~~---~l  242 (393)
                      ++|+.++++++..+..+ ..+.++.  +++. +++ ++.|+.+++|+....+..    ....|...|.+++|+|+   +|
T Consensus       142 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l  221 (325)
T d1pgua1         142 VFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFV  221 (325)
T ss_dssp             EEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEE
T ss_pred             EEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceec
Confidence            99999999998888754 3444433  4444 344 458899999999887754    23467788999999985   89


Q ss_pred             EEEeCCCcEEEEEeccCCccccCceeecCceee----EEEEEE-cCCEEEEecCCCcEEEeeCCCcceeeEeccCccc--
Q 016224          243 FAGTQDGAILAWKFNVTTNCFEPAASLKGHSLA----VVSLVV-GANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSV--  315 (393)
Q Consensus       243 ~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~----v~~l~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~--  315 (393)
                      ++++.|+.|++||+++.    +.+..+.+|...    +.++.+ ++.+|++++.|+.|+|||+++++++..+..|...  
T Consensus       222 ~s~~~d~~i~iwd~~~~----~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~  297 (325)
T d1pgua1         222 ITVGSDRKISCFDGKSG----EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG  297 (325)
T ss_dssp             EEEETTCCEEEEETTTC----CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGG
T ss_pred             cccccccceeeeeeccc----cccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCccc
Confidence            99999999999999876    445566666554    455555 4679999999999999999999999988766543  


Q ss_pred             e--EEEEEc-CCEEEEEeCCCcEEEEEc
Q 016224          316 V--MSLLCW-DQFLLSCSLDKTIKVWFA  340 (393)
Q Consensus       316 v--~~l~~~-~~~l~s~s~dg~i~iwd~  340 (393)
                      +  .++.+. +.+|++++.||.|+|||+
T Consensus       298 ~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         298 NQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             GCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            2  344555 568999999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.3e-26  Score=205.43  Aligned_cols=277  Identities=10%  Similarity=0.049  Sum_probs=193.8

Q ss_pred             ccceeecceEEeeEecC--cEEEecCCCeEEEEECCCCc--EEEEEecCCcCCEEEEEecCC-CCEEEEEeCCCcEEEEE
Q 016224          104 NRAVIKTDILCRNWVQG--NCMYGEKCKFLHSWTVGDGF--KLLTQLEGHQKVVSGITLPSG-SDKLYSGSKDETVRVWD  178 (393)
Q Consensus       104 ~~~~~~~~i~c~~~~~~--~~~~g~~dg~i~vwd~~~~~--~~~~~l~~h~~~I~~i~~s~~-~~~l~s~s~dg~v~iwd  178 (393)
                      ....|+..|++++|+++  .+++|+.||+|+|||+.++.  ..+....+|..+|++++|+|+ +.+|++|+.||+|++|+
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~   85 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence            34567789999999976  36689999999999987542  233344469999999999886 56899999999999999


Q ss_pred             CCCCeEEEEEecCCc----eEEEEeCCCEEE-EEcCCeEEEEECCCCcee-----eecC----CCCcEEEEEEeCCEEEE
Q 016224          179 CASGQCAGVINLGGE----VGCMISEGPWIF-IGVTNFVKAWNTQTNTDL-----SLSG----PVGQVYAMAVGNDLLFA  244 (393)
Q Consensus       179 ~~~~~~~~~~~~~~~----~~~~~~~~~~l~-~~~~~~i~v~d~~~~~~~-----~~~~----~~~~v~~l~~~~~~l~~  244 (393)
                      +..............    ......+...++ .+.++.+++||++.....     ....    .......+....+.+++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (342)
T d1yfqa_          86 LIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIV  165 (342)
T ss_dssp             SSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceee
Confidence            988876666544322    222334555555 468899999998654322     1111    22234445556669999


Q ss_pred             EeCCCcEEEEEeccCCccccCceeecCceeeEEEEEE---cCCEEEEecCCCcEEEeeCCCccee---------------
Q 016224          245 GTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV---GANKLYSGSMDNSIRVWNLETLQCI---------------  306 (393)
Q Consensus       245 ~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~l~sg~~dg~i~iwd~~~~~~~---------------  306 (393)
                      ++.|+.|++||+......... .....+...+.+...   ++..+++++.||.+.+|++......               
T Consensus       166 ~~~d~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~  244 (342)
T d1yfqa_         166 GMNNSQVQWFRLPLCEDDNGT-IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN  244 (342)
T ss_dssp             EESTTEEEEEESSCCTTCCCE-EEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred             ecCCCcEEEEecccCccccee-eeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeec
Confidence            999999999999876543221 222233334444443   3568999999999999998643221               


Q ss_pred             eEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEE
Q 016224          307 QTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRF  384 (393)
Q Consensus       307 ~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~i  384 (393)
                      .....|...+.+++|+  +++|++|+.||.|+|||+.+.+.+..+..+ +.  ...++++|++.   +|++++.|+.+++
T Consensus       245 ~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~--~~~~~~s~~~~---~l~~a~sdd~~~~  318 (342)
T d1yfqa_         245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NE--DSVVKIACSDN---ILCLATSDDTFKT  318 (342)
T ss_dssp             TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SS--SEEEEEEECSS---EEEEEEECTHHHH
T ss_pred             cCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CC--CEEEEEEeCCC---EEEEEEcCCcEEE
Confidence            1123566788999998  679999999999999999987766554332 23  34466667655   8999888888877


Q ss_pred             EeC
Q 016224          385 YDL  387 (393)
Q Consensus       385 wd~  387 (393)
                      |..
T Consensus       319 ~~~  321 (342)
T d1yfqa_         319 NAA  321 (342)
T ss_dssp             CSS
T ss_pred             eee
Confidence            765

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.9e-25  Score=207.03  Aligned_cols=246  Identities=14%  Similarity=0.127  Sum_probs=175.2

Q ss_pred             EEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe-------EEEEEecCCce------EEEEe---CCCEEE
Q 016224          142 LLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ-------CAGVINLGGEV------GCMIS---EGPWIF  205 (393)
Q Consensus       142 ~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~-------~~~~~~~~~~~------~~~~~---~~~~l~  205 (393)
                      .....++|...|.+|++++  ++|+|+|.|++|+|||..+.+       ..........+      .....   +..+++
T Consensus         6 ~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           6 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             eeecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            3456689999999999864  699999999999999976543       22222222211      11111   123444


Q ss_pred             E-EcCCeEEEEECCCCcee-----------eecCCCCcEEEEEEeCC-------EEEEEeCCCcEEEEEeccCCccc---
Q 016224          206 I-GVTNFVKAWNTQTNTDL-----------SLSGPVGQVYAMAVGND-------LLFAGTQDGAILAWKFNVTTNCF---  263 (393)
Q Consensus       206 ~-~~~~~i~v~d~~~~~~~-----------~~~~~~~~v~~l~~~~~-------~l~~~~~dg~I~vwd~~~~~~~~---  263 (393)
                      + +.|+.|++|++......           ....+...+..+++.++       ++++++.||.|++|++.......   
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~  163 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  163 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence            3 47999999987644321           11224456777777543       78999999999999986532110   


Q ss_pred             ----c-------CceeecCceeeEEEEEEcCC-EEEEecCCCcEEEeeCCCcceeeEe------ccCccceEEEEEc--C
Q 016224          264 ----E-------PAASLKGHSLAVVSLVVGAN-KLYSGSMDNSIRVWNLETLQCIQTL------TEHTSVVMSLLCW--D  323 (393)
Q Consensus       264 ----~-------~~~~~~~~~~~v~~l~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~------~~~~~~v~~l~~~--~  323 (393)
                          .       .......+...+.+++++++ +|++|+.|++|+|||+++++++..+      .+|...|.+++|+  +
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg  243 (393)
T d1sq9a_         164 TLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG  243 (393)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred             eeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc
Confidence                0       01112234455778888754 8999999999999999998877654      4688999999998  6


Q ss_pred             CEEEEEeCCCc---EEEEEcCCCcceEEEEe-----------ecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          324 QFLLSCSLDKT---IKVWFATDSGNLEVTYT-----------HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       324 ~~l~s~s~dg~---i~iwd~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                      ++|++|+.|++   |++||+.++..+..+..           ..+...|.+++|+|+++   +|+|++.|++|+|||+.+
T Consensus       244 ~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~---~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE---TLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS---EEEEEETTSEEEEEETTT
T ss_pred             ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC---eeEEECCCCEEEEEECCC
Confidence            79999999875   99999998877666532           12344599999998766   999999999999999999


Q ss_pred             eee
Q 016224          390 VII  392 (393)
Q Consensus       390 ~~l  392 (393)
                      +++
T Consensus       321 g~~  323 (393)
T d1sq9a_         321 KER  323 (393)
T ss_dssp             TEE
T ss_pred             CCE
Confidence            864

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=5.2e-25  Score=197.48  Aligned_cols=249  Identities=14%  Similarity=0.129  Sum_probs=176.4

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe----EEEEEecCCceEEEE--eC-CCEEEEE-cCCeE
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ----CAGVINLGGEVGCMI--SE-GPWIFIG-VTNFV  212 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~--~~-~~~l~~~-~~~~i  212 (393)
                      +++..+++|++.|++|+|+|++++||+|+.||+|+|||++++.    ....+.+...+.++.  ++ +.+++++ .|+.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            6778889999999999999999999999999999999987653    333445666666553  44 4456654 88999


Q ss_pred             EEEECCCCceee-ecCCC-CcEEEEEE--eCCEEEEEeCCCcEEEEEeccCCccccCceeecC----ceeeEEEEEEcCC
Q 016224          213 KAWNTQTNTDLS-LSGPV-GQVYAMAV--GNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKG----HSLAVVSLVVGAN  284 (393)
Q Consensus       213 ~v~d~~~~~~~~-~~~~~-~~v~~l~~--~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~----~~~~v~~l~~~~~  284 (393)
                      ++|+........ ...+. .......+  ....+++++.++.+++||++..............    .......+...++
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            999998877662 22222 22222222  3349999999999999999876433222222222    2334556677788


Q ss_pred             EEEEecCCCcEEEeeCCCcceeeEe---ccCccceEEEEEc---CCEEEEEeCCCcEEEEEcCCCcc------eEEEEe-
Q 016224          285 KLYSGSMDNSIRVWNLETLQCIQTL---TEHTSVVMSLLCW---DQFLLSCSLDKTIKVWFATDSGN------LEVTYT-  351 (393)
Q Consensus       285 ~l~sg~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~------~~~~~~-  351 (393)
                      .+++++.|+.|++||++..+.....   ..+...+.+..+.   +..+++++.||.+.+|+......      ...... 
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~  241 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence            9999999999999999876654332   2344445555554   56899999999999998764321      111111 


Q ss_pred             ------ecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          352 ------HNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       352 ------~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                            ..+...+.+++|+|+..   +|++|+.||.|++||+.+++.
T Consensus       242 ~~~~~~~~~~~~v~~l~~sp~~~---~lasg~~Dg~v~vWD~~~~~~  285 (342)
T d1yfqa_         242 RLNLKDTNLAYPVNSIEFSPRHK---FLYTAGSDGIISCWNLQTRKK  285 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTC---CEEEEETTSCEEEEETTTTEE
T ss_pred             eeccCCCcccccceeEEecCCcc---EEEEECCCCEEEEEECCCCcE
Confidence                  12234578899998766   899999999999999998754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=5.5e-24  Score=187.94  Aligned_cols=223  Identities=13%  Similarity=0.126  Sum_probs=181.0

Q ss_pred             ceeecceEEeeEecCc-EEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 016224          106 AVIKTDILCRNWVQGN-CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQC  184 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~~-~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~  184 (393)
                      ..|...|.|+.+.++. +++++.|++|++|++...     .   ....+..+++++++..++++ .++.+.+|+..+++.
T Consensus        43 ~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~-----~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  113 (287)
T d1pgua2          43 QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKH-----E---FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDI  113 (287)
T ss_dssp             CCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEE-----E---CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCE
T ss_pred             CCCCCCEEEEEecCCCeEEEEeecccccccccccc-----c---cccceeeeeeccCCceEEEe-ecccceeeeccceee
Confidence            3567789999998764 567999999999986532     1   34567788898888766665 566789999999999


Q ss_pred             EEEEecCCceEEEEeCCCEEEEE-cC-CeEEEEECCCCcee-e-ecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEecc
Q 016224          185 AGVINLGGEVGCMISEGPWIFIG-VT-NFVKAWNTQTNTDL-S-LSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNV  258 (393)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~l~~~-~~-~~i~v~d~~~~~~~-~-~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~  258 (393)
                      +..+.......++.+++..++++ .+ +.+++|++...... . ...+...+.+++|+|+  +|++++.||.|++||+..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~  193 (287)
T d1pgua2         114 IKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS  193 (287)
T ss_dssp             EEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             eeeccccceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecc
Confidence            99999888888888887777765 44 48999999766554 2 3457788999999998  999999999999999987


Q ss_pred             CCccccCceeecCceeeEEEEEEc------------CCEEEEecCCCcEEEeeCCC-cceeeEeccCccceEEEEEc-CC
Q 016224          259 TTNCFEPAASLKGHSLAVVSLVVG------------ANKLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCW-DQ  324 (393)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~l~~~------------~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~-~~  324 (393)
                      ..   .....+..|...|.+++|+            +.+|++|+.|++|++||+++ .+.+..+.+|...|+++.|+ +.
T Consensus       194 ~~---~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~  270 (287)
T d1pgua2         194 RE---VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS  270 (287)
T ss_dssp             TE---EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT
T ss_pred             cc---cccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC
Confidence            63   2233456788999999875            35799999999999999976 66778888999999999998 56


Q ss_pred             EEEEEeCCCcEEEEEc
Q 016224          325 FLLSCSLDKTIKVWFA  340 (393)
Q Consensus       325 ~l~s~s~dg~i~iwd~  340 (393)
                      .|++++.|+.|++|++
T Consensus       271 ~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         271 TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEEETTSCEEEEEE
T ss_pred             EEEEEECCCeEEEEEE
Confidence            8999999999999986

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=1.1e-20  Score=167.09  Aligned_cols=257  Identities=13%  Similarity=0.125  Sum_probs=190.0

Q ss_pred             EEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEE-EEeCCCcEEEEECCCCeEEEEEecCCceEEEE--e
Q 016224          123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGVINLGGEVGCMI--S  199 (393)
Q Consensus       123 ~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~  199 (393)
                      ++++.|+.|.+||+.++ +.++++... ..+..++|+|||++|+ +++.++.|++||+.+++.+..+........+.  +
T Consensus         6 V~~~~~~~v~v~D~~t~-~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~   83 (301)
T d1l0qa2           6 IANSESDNISVIDVTSN-KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP   83 (301)
T ss_dssp             EEETTTTEEEEEETTTT-EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT
T ss_pred             EEECCCCEEEEEECCCC-eEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccc
Confidence            46789999999999999 888888754 5578999999999875 66678999999999999999988776654443  5


Q ss_pred             CCCEEEEE--cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCcee
Q 016224          200 EGPWIFIG--VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSL  274 (393)
Q Consensus       200 ~~~~l~~~--~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~  274 (393)
                      ++..+++.  .+..+.+|+..+++......+...+..+.++++   +++++..++.+.+|+..+.    .....+..+ .
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~  158 (301)
T d1l0qa2          84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK----AVINTVSVG-R  158 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEEEEECC-S
T ss_pred             ccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeecccc----ceeeecccC-C
Confidence            66666554  556999999999988866666778889999987   5567777889999998876    333333332 3


Q ss_pred             eEEEEEEc--CCEEEEec-CCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEe---CCCcEEEEEcCCCcce
Q 016224          275 AVVSLVVG--ANKLYSGS-MDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCS---LDKTIKVWFATDSGNL  346 (393)
Q Consensus       275 ~v~~l~~~--~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s---~dg~i~iwd~~~~~~~  346 (393)
                      .+..+.+.  +..++++. .++.+.+|+....+....+..+. ....+.++  +..++.+.   .++.|++||+.+.+.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~  237 (301)
T d1l0qa2         159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA-APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             CceEEEeeccccceeeecccccccccccccceeeeecccccC-CcceeeccccccccccccccceeeeeeeeecCCCeEE
Confidence            34555554  55555555 45778888888877777766544 45566666  56655443   3468999999888766


Q ss_pred             EEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          347 EVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       347 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      ..+..+   ..+..++|+|++.  .++++++.|+.|++||+.++++
T Consensus       238 ~~~~~~---~~~~~va~spdg~--~l~va~~~~~~i~v~D~~t~~~  278 (301)
T d1l0qa2         238 ARIPVG---PDPAGIAVTPDGK--KVYVALSFCNTVSVIDTATNTI  278 (301)
T ss_dssp             EEEECC---SSEEEEEECTTSS--EEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEcCC---CCEEEEEEeCCCC--EEEEEECCCCeEEEEECCCCeE
Confidence            555432   3478899988754  2346778899999999999875

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.90  E-value=6.4e-23  Score=186.20  Aligned_cols=261  Identities=8%  Similarity=0.019  Sum_probs=185.8

Q ss_pred             EeeEec-C-cEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCC--cEEEEECCCCeEEEEEe
Q 016224          114 CRNWVQ-G-NCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE--TVRVWDCASGQCAGVIN  189 (393)
Q Consensus       114 c~~~~~-~-~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg--~v~iwd~~~~~~~~~~~  189 (393)
                      .-.|+| + ..++....|.|++||+.++ +.++ + +|...|.+++|+||+++|++++.+.  .|++||+++++......
T Consensus         7 ~~~fSP~dG~~~a~~~~g~v~v~d~~~~-~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~   83 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSRGQAFIQDVSGT-YVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEE   83 (360)
T ss_dssp             EEEEEECGGGCEEEEETTEEEEECTTSS-BEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred             cccccCCCCCEEEEEECCeEEEEECCCC-cEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeC
Confidence            456886 4 5666566789999999887 5544 3 6999999999999999998877653  79999999988777666


Q ss_pred             cCCceEE--EEeCCCEEEEE-cCCeEEEEECCCCcee-eecCCCCcEEEEEEeCC--EEEEE----------eCCCcEEE
Q 016224          190 LGGEVGC--MISEGPWIFIG-VTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGND--LLFAG----------TQDGAILA  253 (393)
Q Consensus       190 ~~~~~~~--~~~~~~~l~~~-~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~--~l~~~----------~~dg~I~v  253 (393)
                      +...+..  +.+++++|+++ .++.+++|+..+++.. .+..+...+.+++|+|+  +|+.+          ..++.+++
T Consensus        84 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v  163 (360)
T d1k32a3          84 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV  163 (360)
T ss_dssp             CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred             CCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceee
Confidence            6666544  44688888875 7789999999998876 66778889999999998  66543          33456899


Q ss_pred             EEeccCCccccCceeecCceeeEEEEEE--cCCEEEEecCCCcEEEeeCCCcce-------eeEecc-------------
Q 016224          254 WKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQC-------IQTLTE-------------  311 (393)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~-------~~~~~~-------------  311 (393)
                      ||+..+..     ..+..+...+..+.+  ++++|++++.++.+.+||......       +..+..             
T Consensus       164 ~d~~~~~~-----~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  238 (360)
T d1k32a3         164 YDMEGRKI-----FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR  238 (360)
T ss_dssp             EETTTTEE-----EECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCG
T ss_pred             eccccCce-----eeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCC
Confidence            99987532     223334445555555  577999999999999998754321       111100             


Q ss_pred             -----------------------CccceEEEEEcC---------------CEEEEEeCCCcEEEEEcCCCcceEEEEeec
Q 016224          312 -----------------------HTSVVMSLLCWD---------------QFLLSCSLDKTIKVWFATDSGNLEVTYTHN  353 (393)
Q Consensus       312 -----------------------~~~~v~~l~~~~---------------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  353 (393)
                                             .......+....               .++++++.++.|++||+.+.+. ..+.   
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~---  314 (360)
T d1k32a3         239 SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV-TEVK---  314 (360)
T ss_dssp             GGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE-EEEE---
T ss_pred             cCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE-EEec---
Confidence                                   011112222221               1456666788999999976543 2222   


Q ss_pred             CCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          354 EEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       354 ~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      .  .+..++|+||+.   +|++++.||.|++||+++++
T Consensus       315 ~--~v~~~~~SpDG~---~l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         315 N--NLTDLRLSADRK---TVMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             E--EEEEEEECTTSC---EEEEEETTSCEEEEESSCTT
T ss_pred             C--CcCEEEECCCCC---EEEEEECCCeEEEEECCCCC
Confidence            2  377899988766   99999999999999998763

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=1.8e-21  Score=181.99  Aligned_cols=266  Identities=11%  Similarity=0.029  Sum_probs=171.4

Q ss_pred             EEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEE--EecCCceEEE-E-
Q 016224          123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV--INLGGEVGCM-I-  198 (393)
Q Consensus       123 ~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~--~~~~~~~~~~-~-  198 (393)
                      ++.+.||.|+|||+.++ +.+.++..|. .+..++|+|||++|++++.|++|++||+.+++....  +........+ . 
T Consensus        36 V~~~~dg~v~vwD~~t~-~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s  113 (426)
T d1hzua2          36 VTLRDAGQIALVDGDSK-KIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESS  113 (426)
T ss_dssp             EEETTTTEEEEEETTTC-SEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEEC
T ss_pred             EEEcCCCEEEEEECCCC-cEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEe
Confidence            56889999999999998 8999999775 699999999999999999999999999998875443  3433332222 1 


Q ss_pred             ----eCCCEEEEE--cCCeEEEEECCCCcee-eecC-----------CCCcEE---------------------------
Q 016224          199 ----SEGPWIFIG--VTNFVKAWNTQTNTDL-SLSG-----------PVGQVY---------------------------  233 (393)
Q Consensus       199 ----~~~~~l~~~--~~~~i~v~d~~~~~~~-~~~~-----------~~~~v~---------------------------  233 (393)
                          +++++++++  .++.+.+||..++... ....           +.....                           
T Consensus       114 ~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~  193 (426)
T d1hzua2         114 KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK  193 (426)
T ss_dssp             CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECS
T ss_pred             eeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEec
Confidence                478877654  6789999999887644 1111           111222                           


Q ss_pred             -----------------EEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCC---EEEEec
Q 016224          234 -----------------AMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGAN---KLYSGS  290 (393)
Q Consensus       234 -----------------~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~l~sg~  290 (393)
                                       .+.++++   ++++...+..+.+++................+......+...+.   ..++.+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (426)
T d1hzua2         194 DIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL  273 (426)
T ss_dssp             SSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECT
T ss_pred             cccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccC
Confidence                             3333333   22222233334444443331100000000001111111122222   233455


Q ss_pred             CCCcEEEeeCCC-------cceeeEeccCccceEEEEEc--CCEEEE-------EeCCCcEEEEEcCCCcceEEEEee--
Q 016224          291 MDNSIRVWNLET-------LQCIQTLTEHTSVVMSLLCW--DQFLLS-------CSLDKTIKVWFATDSGNLEVTYTH--  352 (393)
Q Consensus       291 ~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~~--~~~l~s-------~s~dg~i~iwd~~~~~~~~~~~~~--  352 (393)
                      .|+.+.+|+...       ++...++.+|...+..++++  +++|++       ++.|++|+|||+.+++....+..+  
T Consensus       274 ~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~  353 (426)
T d1hzua2         274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE  353 (426)
T ss_dssp             TTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH
T ss_pred             CCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccch
Confidence            688888887654       47788999999999999998  568884       556889999999988876655432  


Q ss_pred             -----cCCccEEEEEeeeCCCCCcEEEEE----eCCCeEEEEeCCceee
Q 016224          353 -----NEEHGVLALCGMPDSEGKPVLLCS----CNDNSVRFYDLPSVII  392 (393)
Q Consensus       353 -----~~~~~v~~~~~~~~~~~~~~l~s~----s~dg~I~iwd~~s~~l  392 (393)
                           .....+..+.|+|++.  ++++++    +.+|.|+|||..++++
T Consensus       354 ~~~~~~~~~rv~~~~fSpDGk--~i~vs~~~~~~~~~~i~v~D~~T~k~  400 (426)
T d1hzua2         354 WADLGEGAKRVVQPEYNKRGD--EVWFSVWNGKNDSSALVVVDDKTLKL  400 (426)
T ss_dssp             HHCCCSSCCCEEEEEECSSSS--EEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred             hcccCCCCccEEEEEECCCCC--EEEEEEecCCCCCCeEEEEECCCCeE
Confidence                 2344588899998865  233443    3589999999999875

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.85  E-value=1.2e-19  Score=164.21  Aligned_cols=239  Identities=11%  Similarity=0.032  Sum_probs=176.6

Q ss_pred             eeecceEEeeEecCc--EEEec-CC-CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 016224          107 VIKTDILCRNWVQGN--CMYGE-KC-KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG  182 (393)
Q Consensus       107 ~~~~~i~c~~~~~~~--~~~g~-~d-g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~  182 (393)
                      .|...|.++.|++++  +++++ .+ ..|++||+.++ + +..+..|...|.+++|+|++++|++++.++.+++|++.++
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~-~-~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~  117 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG-K-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG  117 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC-C-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC-c-EEEeeCCCceEEeeeecccccccceecccccccccccccc
Confidence            467789999999986  33433 33 37999999887 3 4567889999999999999999999999999999999999


Q ss_pred             eEEEEEecCCc---eEEEEeCCCEEEEE-----------cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEe
Q 016224          183 QCAGVINLGGE---VGCMISEGPWIFIG-----------VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGT  246 (393)
Q Consensus       183 ~~~~~~~~~~~---~~~~~~~~~~l~~~-----------~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~  246 (393)
                      +....+.....   ...+.+++++|+.+           .++.+++|++.+++...+..+...+..+.|+++  .|++++
T Consensus       118 ~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s  197 (360)
T d1k32a3         118 KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLS  197 (360)
T ss_dssp             CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred             ceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEe
Confidence            98888775532   24556788888753           123689999999998888888899999999998  899999


Q ss_pred             CCCcEEEEEeccCCccccC---------------------------------------ceeecCceeeEEEEEEcC----
Q 016224          247 QDGAILAWKFNVTTNCFEP---------------------------------------AASLKGHSLAVVSLVVGA----  283 (393)
Q Consensus       247 ~dg~I~vwd~~~~~~~~~~---------------------------------------~~~~~~~~~~v~~l~~~~----  283 (393)
                      .++.+.+|+.......+..                                       +..+.........+....    
T Consensus       198 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (360)
T d1k32a3         198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL  277 (360)
T ss_dssp             SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEE
T ss_pred             CCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCce
Confidence            9999999985432110000                                       000000111122222211    


Q ss_pred             -----------CEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEE
Q 016224          284 -----------NKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTY  350 (393)
Q Consensus       284 -----------~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~  350 (393)
                                 .++++++.++.|++||+.+++..    .|...|.+++|+  +++|++++.||.|++||+.+++....+.
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~  353 (360)
T d1k32a3         278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE  353 (360)
T ss_dssp             EEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECC
T ss_pred             EEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEE
Confidence                       13556677899999999987643    345568899998  6799999999999999998887655544


Q ss_pred             e
Q 016224          351 T  351 (393)
Q Consensus       351 ~  351 (393)
                      .
T Consensus       354 ~  354 (360)
T d1k32a3         354 T  354 (360)
T ss_dssp             C
T ss_pred             e
Confidence            3

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=7.3e-20  Score=164.01  Aligned_cols=257  Identities=11%  Similarity=0.033  Sum_probs=183.3

Q ss_pred             cEEEecCCCeEEEEECCCCcEEEEEecCC--cCCEEEEEecCCCCEEE-EEeCCCcEEEEECCCCeEEEEEecCCce---
Q 016224          121 NCMYGEKCKFLHSWTVGDGFKLLTQLEGH--QKVVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGVINLGGEV---  194 (393)
Q Consensus       121 ~~~~g~~dg~i~vwd~~~~~~~~~~l~~h--~~~I~~i~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~~---  194 (393)
                      .+++++.|++|+|||+.++ +.++++..+  ...+.+++|+|||++|+ +++.++.|.+||+.+++.+..+......   
T Consensus         3 ~~vt~~~d~~v~v~D~~s~-~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKM-AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEETTTEEEEEETTTT-EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             EEEEEcCCCEEEEEECCCC-eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            4678999999999999998 888888654  45678999999999875 5678999999999999999888765332   


Q ss_pred             -----EEEEeCCCEEEEE-------------cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEE
Q 016224          195 -----GCMISEGPWIFIG-------------VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAW  254 (393)
Q Consensus       195 -----~~~~~~~~~l~~~-------------~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vw  254 (393)
                           ..+.++++.++++             .+..+.+||..+++..........+..++++++  ++++++.  .+.+|
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~  159 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHVM  159 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--Cccee
Confidence                 2344677777654             356889999999988865556677889999998  6777654  47788


Q ss_pred             EeccCCccccCceeecC-----------------------ceeeEEEEEE--cCCEEEEecCCCcEEEeeCCCcceeeE-
Q 016224          255 KFNVTTNCFEPAASLKG-----------------------HSLAVVSLVV--GANKLYSGSMDNSIRVWNLETLQCIQT-  308 (393)
Q Consensus       255 d~~~~~~~~~~~~~~~~-----------------------~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~-  308 (393)
                      |.......    ..+..                       +.........  ....+..+..++.+.+||..+++.... 
T Consensus       160 d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (337)
T d1pbyb_         160 DPEAGTLV----EDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE  235 (337)
T ss_dssp             ETTTTEEE----EEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred             eeecCcEE----EEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEE
Confidence            87764311    11100                       0011111111  122333445567799999998876543 


Q ss_pred             eccCccceEEEEEcC--CEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          309 LTEHTSVVMSLLCWD--QFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       309 ~~~~~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                      +..+...+..+.+.+  .+++.+  ++.|++||+.+.+.+..+..   ...+.+++|+|++.   +|++++.|+.|++||
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~s~dG~---~l~v~~~~~~i~v~D  307 (337)
T d1pbyb_         236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL---PHSYYSVNVSTDGS---TVWLGGALGDLAAYD  307 (337)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---SSCCCEEEECTTSC---EEEEESBSSEEEEEE
T ss_pred             ecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcC---CCCEEEEEECCCCC---EEEEEeCCCcEEEEE
Confidence            445666677777773  455444  68999999998877666543   23477889988766   899999999999999


Q ss_pred             CCceee
Q 016224          387 LPSVII  392 (393)
Q Consensus       387 ~~s~~l  392 (393)
                      +.+++.
T Consensus       308 ~~t~~~  313 (337)
T d1pbyb_         308 AETLEK  313 (337)
T ss_dssp             TTTCCE
T ss_pred             CCCCcE
Confidence            998764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=1.9e-17  Score=154.58  Aligned_cols=181  Identities=13%  Similarity=0.075  Sum_probs=129.7

Q ss_pred             EEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCe--EEEEEecCCceEEE-E-
Q 016224          123 MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQ--CAGVINLGGEVGCM-I-  198 (393)
Q Consensus       123 ~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~--~~~~~~~~~~~~~~-~-  198 (393)
                      ++.+.+|+|.|||..++ +++.++..|. .+..++|+|||++|++++.|++|++||+.+++  .+..+........+ . 
T Consensus        36 v~~~d~g~v~v~D~~t~-~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s  113 (432)
T d1qksa2          36 VTLRDAGQIALIDGSTY-EIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS  113 (432)
T ss_dssp             EEETTTTEEEEEETTTC-CEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred             EEEcCCCEEEEEECCCC-cEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence            57889999999999998 8999998774 69999999999999999999999999998876  44445544333222 2 


Q ss_pred             ----eCCCEEEE-E-cCCeEEEEECCCCceee-ec-----------CCCCcEEEEEEeCC---EEEEEeCCCcEEEEEec
Q 016224          199 ----SEGPWIFI-G-VTNFVKAWNTQTNTDLS-LS-----------GPVGQVYAMAVGND---LLFAGTQDGAILAWKFN  257 (393)
Q Consensus       199 ----~~~~~l~~-~-~~~~i~v~d~~~~~~~~-~~-----------~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~  257 (393)
                          +++++|++ + .++.|++||..+++.+. +.           .+......+.++++   ++++...++.|.+||..
T Consensus       114 ~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~  193 (432)
T d1qksa2         114 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT  193 (432)
T ss_dssp             CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred             cccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEcc
Confidence                47887654 3 68899999999988762 21           24456677888887   56777788999999987


Q ss_pred             cCCccccCceeecCceeeEEEEEEc--CCEEEEec-CCCcEEEeeCCCcceeeE
Q 016224          258 VTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGS-MDNSIRVWNLETLQCIQT  308 (393)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~-~dg~i~iwd~~~~~~~~~  308 (393)
                      ....  ..+..+ .+......+.++  ++++++++ .++.+.++|..+++.+..
T Consensus       194 ~~~~--~~~~~i-~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~  244 (432)
T d1qksa2         194 DLNN--LKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI  244 (432)
T ss_dssp             CSSE--EEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             CCCc--ceEEEE-cccCccccceECCCCCEEEEeccccceEEEeecccceEEEE
Confidence            6532  111222 233344555554  55655544 566888888877665443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.80  E-value=3.4e-18  Score=153.51  Aligned_cols=263  Identities=10%  Similarity=0.040  Sum_probs=177.3

Q ss_pred             eEecC--cEEEecCCCeEEEEECCCCcEEEEEec-CCcCCEEEEEecCCCCEEE-EEeCCCcEEEEECCCCeEEEEEecC
Q 016224          116 NWVQG--NCMYGEKCKFLHSWTVGDGFKLLTQLE-GHQKVVSGITLPSGSDKLY-SGSKDETVRVWDCASGQCAGVINLG  191 (393)
Q Consensus       116 ~~~~~--~~~~g~~dg~i~vwd~~~~~~~~~~l~-~h~~~I~~i~~s~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~  191 (393)
                      +++++  .+++++.++.|.+||+.++ +++++++ .|...+.+++|+||+++|+ ++..++.|.+||+.+++.+..+...
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~-~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASD-TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTT-EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCC-CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            34544  4567999999999999998 8898887 4567788999999999875 5567899999999999999887654


Q ss_pred             Cc---------eEEEEeCCCEEEEE-------------cCCeEEEEECCCCcee---eecCCCCcEEEEEEeCC-EEEEE
Q 016224          192 GE---------VGCMISEGPWIFIG-------------VTNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGND-LLFAG  245 (393)
Q Consensus       192 ~~---------~~~~~~~~~~l~~~-------------~~~~i~v~d~~~~~~~---~~~~~~~~v~~l~~~~~-~l~~~  245 (393)
                      ..         ...+.+++++++++             .+..+.+|+..+++..   ........+..+.++++ .+++.
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence            32         23345688877664             2567888998877654   22222334455556666 44443


Q ss_pred             eCCCcEEEEEeccCCccccCceeecC---------------------ceeeEEEE--EE----cCCEEEEecCCCcEEEe
Q 016224          246 TQDGAILAWKFNVTTNCFEPAASLKG---------------------HSLAVVSL--VV----GANKLYSGSMDNSIRVW  298 (393)
Q Consensus       246 ~~dg~I~vwd~~~~~~~~~~~~~~~~---------------------~~~~v~~l--~~----~~~~l~sg~~dg~i~iw  298 (393)
                      +  +.+.+|++.+...    ...+..                     ....+...  ..    ....++++..+..+.+|
T Consensus       162 ~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
T d1jmxb_         162 G--PDIYKMDVKTGKY----TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  235 (346)
T ss_dssp             S--SSEEEECTTTCCE----EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             C--CcceEEEccCCCE----EEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence            3  4577888765421    111110                     01111111  11    12245566677889999


Q ss_pred             eCCCcceeeE-eccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEE
Q 016224          299 NLETLQCIQT-LTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLC  375 (393)
Q Consensus       299 d~~~~~~~~~-~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s  375 (393)
                      |+.++..... +..|...+..+.++  +.+++... ++.|.+||..+.+.+..+..   ...+..++|+|++.   +|++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~---~~~~~~va~s~DG~---~l~v  308 (346)
T d1jmxb_         236 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL---DHTYYCVAFDKKGD---KLYL  308 (346)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC---SSCCCEEEECSSSS---CEEE
T ss_pred             ECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcC---CCCEEEEEEcCCCC---EEEE
Confidence            9998776544 45677778888777  44555554 46799999988776655442   23477899988766   8999


Q ss_pred             EeCCCeEEEEeCCceee
Q 016224          376 SCNDNSVRFYDLPSVII  392 (393)
Q Consensus       376 ~s~dg~I~iwd~~s~~l  392 (393)
                      ++.|+.|++||+.++++
T Consensus       309 ~~~d~~v~v~D~~t~~~  325 (346)
T d1jmxb_         309 GGTFNDLAVFNPDTLEK  325 (346)
T ss_dssp             ESBSSEEEEEETTTTEE
T ss_pred             EeCCCcEEEEECccCCE
Confidence            99999999999999874

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.76  E-value=2.5e-15  Score=131.89  Aligned_cols=233  Identities=12%  Similarity=0.104  Sum_probs=171.7

Q ss_pred             ceEEeeEecCc--E-EEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEE-EeCCCcEEEEECCCCeEEE
Q 016224          111 DILCRNWVQGN--C-MYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYS-GSKDETVRVWDCASGQCAG  186 (393)
Q Consensus       111 ~i~c~~~~~~~--~-~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s-~s~dg~v~iwd~~~~~~~~  186 (393)
                      ....++|++++  + +++..++.|++||+.++ +.+.++..|. .+..++|++++.+++. +..++.+.+|+..+++...
T Consensus        33 ~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATN-NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTTT-EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCC-ceeeeeeccc-cccccccccccccccccccccceeeecccccceeee
Confidence            45678899874  3 35778999999999998 8888888776 4688999999986655 5567899999999999999


Q ss_pred             EEecCCceEEE--EeCCCEEEEE--cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeC-CCcEEEEEeccC
Q 016224          187 VINLGGEVGCM--ISEGPWIFIG--VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQ-DGAILAWKFNVT  259 (393)
Q Consensus       187 ~~~~~~~~~~~--~~~~~~l~~~--~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~-dg~I~vwd~~~~  259 (393)
                      .+........+  .+++..+++.  .+..+.+|+..+........+...+..+.++++  .++++.. ++.+.+|+....
T Consensus       111 ~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (301)
T d1l0qa2         111 TVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN  190 (301)
T ss_dssp             EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             eccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccce
Confidence            88877665443  3577777654  567899999999988866666677889999987  5555554 456666765544


Q ss_pred             CccccCceeecCceeeEEEEEE--cCCEEEEe---cCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEE-EEEeC
Q 016224          260 TNCFEPAASLKGHSLAVVSLVV--GANKLYSG---SMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFL-LSCSL  331 (393)
Q Consensus       260 ~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg---~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l-~s~s~  331 (393)
                          +.......+ .....+.+  +++.++.+   ..++.|++||+.+++.+.++..+ ..+..++++  +++| ++++.
T Consensus       191 ----~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~  264 (301)
T d1l0qa2         191 ----SVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSF  264 (301)
T ss_dssp             ----EEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETT
T ss_pred             ----eeeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECC
Confidence                222333322 33445555  45665544   34578999999999998888754 456889997  5666 67778


Q ss_pred             CCcEEEEEcCCCcceEEEEe
Q 016224          332 DKTIKVWFATDSGNLEVTYT  351 (393)
Q Consensus       332 dg~i~iwd~~~~~~~~~~~~  351 (393)
                      |++|++||+.+++.+..+..
T Consensus       265 ~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         265 CNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             TTEEEEEETTTTEEEEEEEC
T ss_pred             CCeEEEEECCCCeEEEEEeC
Confidence            99999999998877666543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.75  E-value=2e-15  Score=137.27  Aligned_cols=275  Identities=8%  Similarity=-0.024  Sum_probs=178.5

Q ss_pred             eecceEEeeEecCcE--EE-----ecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe----------C
Q 016224          108 IKTDILCRNWVQGNC--MY-----GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS----------K  170 (393)
Q Consensus       108 ~~~~i~c~~~~~~~~--~~-----g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s----------~  170 (393)
                      +..++...+++++..  +.     .+..+.|.+||..++ +.+.++..+..+  .++|+|||++|++++          .
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg-~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG-SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCC-CEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccccc
Confidence            344666777777642  22     234567999999999 888888877654  699999999999875          3


Q ss_pred             CCcEEEEECCCCeEEEEEecCCce----------EEEEeCCCEEEEE---cCCeEEEEECCCCceeeecCCCCcEEEEEE
Q 016224          171 DETVRVWDCASGQCAGVINLGGEV----------GCMISEGPWIFIG---VTNFVKAWNTQTNTDLSLSGPVGQVYAMAV  237 (393)
Q Consensus       171 dg~v~iwd~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~---~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~  237 (393)
                      ++.|.+||..+++.+..+..+...          ..+.++++.+++.   .++.+.+|+....+..   .+.....++.+
T Consensus        96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  172 (373)
T d2madh_          96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD---QLLSSPTCYHI  172 (373)
T ss_pred             ceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE---EEeccceeEEE
Confidence            578999999999998887655432          2334555554432   3446777777666544   22233556777


Q ss_pred             eCC---EEEEEeCCCcEEEEEeccCCccccCceee--cCceeeEEEEEEcCC-EEEEecCCCcEEEeeCCCccee--eEe
Q 016224          238 GND---LLFAGTQDGAILAWKFNVTTNCFEPAASL--KGHSLAVVSLVVGAN-KLYSGSMDNSIRVWNLETLQCI--QTL  309 (393)
Q Consensus       238 ~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~-~l~sg~~dg~i~iwd~~~~~~~--~~~  309 (393)
                      +++   .+++.+.|+.+.+|+..............  .........+.++++ .++..+.++.+.+|+..+....  ..+
T Consensus       173 s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  252 (373)
T d2madh_         173 HPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPI  252 (373)
T ss_pred             ecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEee
Confidence            766   77889999999999987763221111111  112222334445543 5667778899999998876532  222


Q ss_pred             ccCccce----------EEEEEc------------CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCC
Q 016224          310 TEHTSVV----------MSLLCW------------DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDS  367 (393)
Q Consensus       310 ~~~~~~v----------~~l~~~------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  367 (393)
                      ..+....          ..+.++            +..+++...++.|.+||..+++.+..+..   ...+..+.|+||+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~---~~~~~~~a~spDG  329 (373)
T d2madh_         253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL---GHDVDAISVAQDG  329 (373)
T ss_pred             ccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecC---CCCeeEEEECCCC
Confidence            2111111          111111            34556677788999999988877665432   3347889998875


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCceee
Q 016224          368 EGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       368 ~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      .. .++++++.|+.|++||+.++++
T Consensus       330 ~~-~l~vt~~~d~~v~v~D~~tg~~  353 (373)
T d2madh_         330 GP-DLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             CE-EEEEEeCCCCeEEEEECCCCCE
Confidence            31 1456889999999999999875

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=2.9e-15  Score=133.61  Aligned_cols=267  Identities=13%  Similarity=0.190  Sum_probs=167.1

Q ss_pred             EEEecCCCeEEEEECCCC--cEEEEEecCCcCCEEEEEecCCCCEEEEEe-CCCcEEEEECCCCeE----EEEEecCCc-
Q 016224          122 CMYGEKCKFLHSWTVGDG--FKLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVWDCASGQC----AGVINLGGE-  193 (393)
Q Consensus       122 ~~~g~~dg~i~vwd~~~~--~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s-~dg~v~iwd~~~~~~----~~~~~~~~~-  193 (393)
                      .++++.|+.|++|+++..  .+.++.+ .|...|..|+|+|||++|++++ .|+.|++|++.....    ......... 
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            356889999999998743  2344444 4888999999999999996655 589999999876532    222233322 


Q ss_pred             -eEEEEeCCCEEEEE--cCCeEEEEECCCCcee---eecCCCCcEEEEEEeCC--EEEE-EeCCCcEEEEEeccCCcccc
Q 016224          194 -VGCMISEGPWIFIG--VTNFVKAWNTQTNTDL---SLSGPVGQVYAMAVGND--LLFA-GTQDGAILAWKFNVTTNCFE  264 (393)
Q Consensus       194 -~~~~~~~~~~l~~~--~~~~i~v~d~~~~~~~---~~~~~~~~v~~l~~~~~--~l~~-~~~dg~I~vwd~~~~~~~~~  264 (393)
                       ...+.+++++|+++  .++.|.+|+.......   ....+...+.++.++++  .+++ ...+..|.+|+.........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence             24456789988877  4568999988776544   44556677888899988  4444 44666799999876532111


Q ss_pred             Cc--eeecCceeeEEEEEEc--CCEE-EEecCCCcEEEeeCCCcc----eeeEec------cCccceEEEEEc--CCE-E
Q 016224          265 PA--ASLKGHSLAVVSLVVG--ANKL-YSGSMDNSIRVWNLETLQ----CIQTLT------EHTSVVMSLLCW--DQF-L  326 (393)
Q Consensus       265 ~~--~~~~~~~~~v~~l~~~--~~~l-~sg~~dg~i~iwd~~~~~----~~~~~~------~~~~~v~~l~~~--~~~-l  326 (393)
                      ..  ............+.++  +..+ .+....+...+|+.....    ....+.      ........+.++  +++ +
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~  245 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY  245 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence            00  0111222334556665  4444 455566777888765322    111221      122334555555  555 4


Q ss_pred             EEEeCCCcEEEEEcCCCcceEEEEe-ecCCccEEEEEeeeCCCCCcEEEEEe-CCCeEEEE--eCCceee
Q 016224          327 LSCSLDKTIKVWFATDSGNLEVTYT-HNEEHGVLALCGMPDSEGKPVLLCSC-NDNSVRFY--DLPSVII  392 (393)
Q Consensus       327 ~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~s~s-~dg~I~iw--d~~s~~l  392 (393)
                      +++..++.+.+|++........... .........++|+|+++   +|++++ .++.|++|  |.++|+|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk---~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGK---YLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSS---EEEEECTTTCEEEEEEEETTTTEE
T ss_pred             eecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCC---EEEEEECCCCeEEEEEEECCCCcE
Confidence            5556678999999876655444433 22333466788888755   666654 56899999  4566654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=3.8e-15  Score=134.23  Aligned_cols=260  Identities=11%  Similarity=0.027  Sum_probs=164.0

Q ss_pred             cCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe----------CCCcEEEEECCCCeEEEEEecCC---
Q 016224          126 EKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS----------KDETVRVWDCASGQCAGVINLGG---  192 (393)
Q Consensus       126 ~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~---  192 (393)
                      ..+..|.+||..++ +++.++..+..+  .++|+||+++|++++          .|+.|++||+.+++.+..+....   
T Consensus        25 ~~~~~v~v~D~~tg-~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~  101 (355)
T d2bbkh_          25 AAVTQQFVIDGEAG-RVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR  101 (355)
T ss_dssp             CSSEEEEEEETTTT-EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC
T ss_pred             CCcCeEEEEECCCC-cEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcce
Confidence            45678999999999 888888766555  699999999888653          47899999999999888876432   


Q ss_pred             -------ceEEEEeCCCEEEEE---cCCeEEEEECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCcc
Q 016224          193 -------EVGCMISEGPWIFIG---VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNC  262 (393)
Q Consensus       193 -------~~~~~~~~~~~l~~~---~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~  262 (393)
                             ....+.++++.+++.   .+..+.+|+..+++.................+..+++.+.|+...++........
T Consensus       102 ~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~  181 (355)
T d2bbkh_         102 FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP  181 (355)
T ss_dssp             CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred             eecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeE
Confidence                   123456788877764   3458999999999877433322233333333345555556666655554333211


Q ss_pred             ccC--ceeecCceeeEEE--EEEcCCEEEEecCCCcEEEeeCCCccee--eEeccCcc----------ceEEEEEc--CC
Q 016224          263 FEP--AASLKGHSLAVVS--LVVGANKLYSGSMDNSIRVWNLETLQCI--QTLTEHTS----------VVMSLLCW--DQ  324 (393)
Q Consensus       263 ~~~--~~~~~~~~~~v~~--l~~~~~~l~sg~~dg~i~iwd~~~~~~~--~~~~~~~~----------~v~~l~~~--~~  324 (393)
                      ...  ......+...+..  ....+..++.++.++.+++|++..++..  .....+..          ....+.++  +.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~  261 (355)
T d2bbkh_         182 EITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD  261 (355)
T ss_dssp             EEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT
T ss_pred             EEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCC
Confidence            000  0000111222222  2234568888899999999999876542  22222211          11223343  55


Q ss_pred             EEEEEeCC----------CcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          325 FLLSCSLD----------KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       325 ~l~s~s~d----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      .++....+          ..|.+||..+.+.+..+...   ..+..++|+|++.. .++++++.|+.|++||++++++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~---~~~~~~a~spDG~~-~l~v~~~~d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG---HEIDSINVSQDEKP-LLYALSTGDKTLYIHDAESGEE  335 (355)
T ss_dssp             EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECCSSSC-EEEEEETTTTEEEEEETTTCCE
T ss_pred             eEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC---CCEEEEEEcCCCCe-EEEEEECCCCEEEEEECCCCCE
Confidence            55544432          36999999988776655432   23678889887431 2456778899999999999875

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.67  E-value=1.9e-15  Score=140.54  Aligned_cols=242  Identities=11%  Similarity=0.035  Sum_probs=157.3

Q ss_pred             ceEEeeEecCc--EEEecCCCeEEEEECCCCc-EEEEEe---cCCcCCEEEEEecCCCCEEEEE-eCCCcEEEEECCCCe
Q 016224          111 DILCRNWVQGN--CMYGEKCKFLHSWTVGDGF-KLLTQL---EGHQKVVSGITLPSGSDKLYSG-SKDETVRVWDCASGQ  183 (393)
Q Consensus       111 ~i~c~~~~~~~--~~~g~~dg~i~vwd~~~~~-~~~~~l---~~h~~~I~~i~~s~~~~~l~s~-s~dg~v~iwd~~~~~  183 (393)
                      .+..++|++++  +++++.|++|++||+.++. ....++   .+|...+.+++|+|||++|+++ ..++.+++||..+++
T Consensus        63 ~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~  142 (426)
T d1hzua2          63 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE  142 (426)
T ss_dssp             SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred             CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccc
Confidence            57789999884  4468899999999998772 222233   3577778888999999987554 578999999999887


Q ss_pred             EEEEEecCC------------ceEE----------------------------------------------EEeCCCEEE
Q 016224          184 CAGVINLGG------------EVGC----------------------------------------------MISEGPWIF  205 (393)
Q Consensus       184 ~~~~~~~~~------------~~~~----------------------------------------------~~~~~~~l~  205 (393)
                      ++..+....            ....                                              +.+++++++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  222 (426)
T d1hzua2         143 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFM  222 (426)
T ss_dssp             EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEE
T ss_pred             eeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEE
Confidence            765543211            0000                                              012344444


Q ss_pred             EE--cCCeEEEEECCCCceeeec---CCCCcEEEEEE--eCC---EEEEEeCCCcEEEEEeccCCc---cccCceeecCc
Q 016224          206 IG--VTNFVKAWNTQTNTDLSLS---GPVGQVYAMAV--GND---LLFAGTQDGAILAWKFNVTTN---CFEPAASLKGH  272 (393)
Q Consensus       206 ~~--~~~~i~v~d~~~~~~~~~~---~~~~~v~~l~~--~~~---~l~~~~~dg~I~vwd~~~~~~---~~~~~~~~~~~  272 (393)
                      ++  .++.+.+++..+++.....   ..........+  ...   ..+....|+.+.+|+......   ..+....+.+|
T Consensus       223 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~  302 (426)
T d1hzua2         223 TAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ  302 (426)
T ss_dssp             EEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred             eeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecC
Confidence            43  3346666776666655221   11111112222  122   333445688888888765422   12455677888


Q ss_pred             eeeEEEEEEc--CCEEEE-------ecCCCcEEEeeCCCcceeeEec---------cCccceEEEEEc--CCEEE-EE--
Q 016224          273 SLAVVSLVVG--ANKLYS-------GSMDNSIRVWNLETLQCIQTLT---------EHTSVVMSLLCW--DQFLL-SC--  329 (393)
Q Consensus       273 ~~~v~~l~~~--~~~l~s-------g~~dg~i~iwd~~~~~~~~~~~---------~~~~~v~~l~~~--~~~l~-s~--  329 (393)
                      ...+..++++  +.+|++       +..|++|+|||+++++...++.         .|...+..+.|+  |++++ ++  
T Consensus       303 ~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~  382 (426)
T d1hzua2         303 GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWN  382 (426)
T ss_dssp             SSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECC
T ss_pred             CCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEec
Confidence            8888888876  557774       5568899999999988776652         455668899998  56654 43  


Q ss_pred             --eCCCcEEEEEcCCCcceEEEEee
Q 016224          330 --SLDKTIKVWFATDSGNLEVTYTH  352 (393)
Q Consensus       330 --s~dg~i~iwd~~~~~~~~~~~~~  352 (393)
                        +.++.|+|||.++.+....+...
T Consensus       383 ~~~~~~~i~v~D~~T~k~~~~i~~~  407 (426)
T d1hzua2         383 GKNDSSALVVVDDKTLKLKAVVKDP  407 (426)
T ss_dssp             CTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             CCCCCCeEEEEECCCCeEEEEECCC
Confidence              35888999999988776665543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=5.2e-15  Score=131.80  Aligned_cols=234  Identities=9%  Similarity=0.014  Sum_probs=162.7

Q ss_pred             ceEEeeEecCc-E--EEecCCCeEEEEECCCCcEEEEEecCCcC-----CEEEEEecCCCCEEEEEe------------C
Q 016224          111 DILCRNWVQGN-C--MYGEKCKFLHSWTVGDGFKLLTQLEGHQK-----VVSGITLPSGSDKLYSGS------------K  170 (393)
Q Consensus       111 ~i~c~~~~~~~-~--~~g~~dg~i~vwd~~~~~~~~~~l~~h~~-----~I~~i~~s~~~~~l~s~s------------~  170 (393)
                      .+..+++++++ .  ++++.++.|.+||+.++ +.+..+..+..     .+..++|+|++++++++.            .
T Consensus        35 ~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~-~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T d1pbyb_          35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTC-CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CccEEEECCCCCEEEEEECCCCeEEEEECCCC-cEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecccc
Confidence            45678899874 2  35778999999999998 78887776643     345789999999998876            4


Q ss_pred             CCcEEEEECCCCeEEEEEecCCce--EEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--------
Q 016224          171 DETVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--------  240 (393)
Q Consensus       171 dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--------  240 (393)
                      +..+.+||..+++....+.....+  ..+.+++++++++. +.+.+||..+++...............+.++        
T Consensus       114 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (337)
T d1pbyb_         114 PTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG-RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH  192 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES-SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCC
T ss_pred             ccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc-CCcceeeeecCcEEEEeecCCccccceecCCcceeeccc
Confidence            678999999999999988876554  34457888888764 4578899988876522211110000001100        


Q ss_pred             ------------------EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC--CEEEEecCCCcEEEeeC
Q 016224          241 ------------------LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA--NKLYSGSMDNSIRVWNL  300 (393)
Q Consensus       241 ------------------~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~sg~~dg~i~iwd~  300 (393)
                                        .+..+..++.+.+|++..+..   ....+..+...+..+.+.+  .+++.+  ++.|++||+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~  267 (337)
T d1pbyb_         193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM---AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDL  267 (337)
T ss_dssp             TTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE---EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEET
T ss_pred             cccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcE---EEEEecCCCcceEEEEecccceEEEEc--cccEEEEEC
Confidence                              111223345577887776531   1223334555556666654  355544  689999999


Q ss_pred             CCcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEee
Q 016224          301 ETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTH  352 (393)
Q Consensus       301 ~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  352 (393)
                      .+++.+..+. +...+.+++|+  +++|++++.|++|+|||..+.+.+..+...
T Consensus       268 ~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~  320 (337)
T d1pbyb_         268 EKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             TTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             CCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECC
Confidence            9999998886 45667889997  789999999999999999998887776543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.57  E-value=2.4e-13  Score=123.44  Aligned_cols=257  Identities=10%  Similarity=-0.011  Sum_probs=158.8

Q ss_pred             CeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe----------CCCcEEEEECCCCeEEEEEecCC------
Q 016224          129 KFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS----------KDETVRVWDCASGQCAGVINLGG------  192 (393)
Q Consensus       129 g~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~------  192 (393)
                      ..|.+||..++ +.+.++..+...  .++|+||+++|++.+          .|++|.+||..+++.+..+..+.      
T Consensus        46 ~~~~~~d~~~~-~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~  122 (368)
T d1mdah_          46 TENWVSCAGCG-VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV  122 (368)
T ss_dssp             EEEEEEETTTT-EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred             ceEEEEeCCCC-cEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecc
Confidence            35777799888 888888877765  489999999998765          36789999999999988876432      


Q ss_pred             ----ceEEEEeCCCEEEEE--cCCeEEEEECCCCceeeecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCcccc--
Q 016224          193 ----EVGCMISEGPWIFIG--VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFE--  264 (393)
Q Consensus       193 ----~~~~~~~~~~~l~~~--~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~--  264 (393)
                          ....+.+++++++++  .++.+.+||+.+++.................+..+++.+.||++.++++........  
T Consensus       123 g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~  202 (368)
T d1mdah_         123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV  202 (368)
T ss_dssp             SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred             cCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeee
Confidence                124567899888765  467999999999987733222222111222344778888999999998876543211  


Q ss_pred             CceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEe--cc------------CccceEEEEEcCCEEEEEe
Q 016224          265 PAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTL--TE------------HTSVVMSLLCWDQFLLSCS  330 (393)
Q Consensus       265 ~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~--~~------------~~~~v~~l~~~~~~l~s~s  330 (393)
                      .......+...+....+.....+.....+.+.++++...+.....  ..            .......+...+..++...
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~  282 (368)
T d1mdah_         203 GAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT  282 (368)
T ss_dssp             CCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred             ecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEe
Confidence            011122233333334444332222233455556665543332211  11            1112233433455544432


Q ss_pred             CC---------CcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          331 LD---------KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       331 ~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      .+         ..|.+||..+++.+..+...   ..+..+.|+|+++. .+++++..|+.|++||+.++++
T Consensus       283 ~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~---~~~~~~a~spDG~~-~ly~s~~~~~~v~v~D~~tgk~  349 (368)
T d1mdah_         283 VEHSRSCLAAAENTSSVTASVGQTSGPISNG---HDSDAIIAAQDGAS-DNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             EECSSCTTSCEEEEEEEESSSCCEEECCEEE---EEECEEEECCSSSC-EEEEEETTTTEEEEEESSSCEE
T ss_pred             cCCCceeecCCceEEEEECCCCcEeEEecCC---CceeEEEECCCCCE-EEEEEeCCCCeEEEEECCCCCE
Confidence            21         35889999888766554432   24777889887432 1456777899999999999875

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.53  E-value=6.7e-13  Score=123.28  Aligned_cols=188  Identities=12%  Similarity=-0.005  Sum_probs=133.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--
Q 016224          163 DKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--  240 (393)
Q Consensus       163 ~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--  240 (393)
                      -++++.+.||+|.|||..+++++..+..                                     + ..+..++|+||  
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~-------------------------------------g-~~~~~v~fSpDG~   74 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDT-------------------------------------G-YAVHISRLSASGR   74 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEEC-------------------------------------S-SCEEEEEECTTSC
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeC-------------------------------------C-CCeeEEEECCCCC
Confidence            3457888889999999999888877642                                     2 35789999999  


Q ss_pred             EEEEEeCCCcEEEEEeccCCcccc-CceeecCceeeEEEEEE--cCCEE-EEecCCCcEEEeeCCCcceeeEeccCc---
Q 016224          241 LLFAGTQDGAILAWKFNVTTNCFE-PAASLKGHSLAVVSLVV--GANKL-YSGSMDNSIRVWNLETLQCIQTLTEHT---  313 (393)
Q Consensus       241 ~l~~~~~dg~I~vwd~~~~~~~~~-~~~~~~~~~~~v~~l~~--~~~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~~---  313 (393)
                      ++++++.|+.|.+||+.+...... .+.....|...+.+..+  ++++| ++++.++.|++||..+++++..+..|.   
T Consensus        75 ~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~  154 (432)
T d1qksa2          75 YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY  154 (432)
T ss_dssp             EEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT
T ss_pred             EEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccc
Confidence            889999999999999987643211 11222345555554444  57765 778889999999999999988876543   


Q ss_pred             --------cceEEEEEc--CC-EEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEe-CCCe
Q 016224          314 --------SVVMSLLCW--DQ-FLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSC-NDNS  381 (393)
Q Consensus       314 --------~~v~~l~~~--~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s-~dg~  381 (393)
                              .....+.++  +. ++++...++.|.+||..+.+........ .......+.++|++.   ++++++ .++.
T Consensus       155 ~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~-~g~~~~~~~~spdg~---~~~va~~~~~~  230 (432)
T d1qksa2         155 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHR---YFITAANARNK  230 (432)
T ss_dssp             TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSC---EEEEEEGGGTE
T ss_pred             cceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEc-ccCccccceECCCCC---EEEEeccccce
Confidence                    334566666  44 4567777899999999876655443322 233477888888755   555554 5678


Q ss_pred             EEEEeCCceee
Q 016224          382 VRFYDLPSVII  392 (393)
Q Consensus       382 I~iwd~~s~~l  392 (393)
                      |.++|..++++
T Consensus       231 v~v~d~~~~~~  241 (432)
T d1qksa2         231 LVVIDTKEGKL  241 (432)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEeecccceE
Confidence            99999887654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.51  E-value=1.7e-11  Score=110.67  Aligned_cols=243  Identities=7%  Similarity=-0.052  Sum_probs=161.0

Q ss_pred             EeeEecCcEE--E----------ecCCCeEEEEECCCCcEEEEEecCCcCCE-------EEEEecCCCCEEEEEe--CCC
Q 016224          114 CRNWVQGNCM--Y----------GEKCKFLHSWTVGDGFKLLTQLEGHQKVV-------SGITLPSGSDKLYSGS--KDE  172 (393)
Q Consensus       114 c~~~~~~~~~--~----------g~~dg~i~vwd~~~~~~~~~~l~~h~~~I-------~~i~~s~~~~~l~s~s--~dg  172 (393)
                      .+.|++++..  +          +..++.|.+||..++ +.+..+..+....       ..+.|+++++.++...  .++
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~  148 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF-LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP  148 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCC-cEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCC
Confidence            5778877422  2          345788999999998 8888777666544       4478889988776654  457


Q ss_pred             cEEEEECCCCeEEEEEecCCceEEEEeCCCEEE--EEcCCeEEEEECCCCceeeec-------CCCCcEEEEEEeCC-EE
Q 016224          173 TVRVWDCASGQCAGVINLGGEVGCMISEGPWIF--IGVTNFVKAWNTQTNTDLSLS-------GPVGQVYAMAVGND-LL  242 (393)
Q Consensus       173 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~v~d~~~~~~~~~~-------~~~~~v~~l~~~~~-~l  242 (393)
                      .+.+|+....+.......... ..+.++++.++  ...++.+.+|+...++.....       ........+.+.++ .+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~-~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (373)
T d2madh_         149 AVGLVVQGGSSDDQLLSSPTC-YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI  227 (373)
T ss_pred             ceEEeeccCCeEEEEecccee-EEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE
Confidence            899999988877666554332 33445665544  347899999999888765221       11222344555666 67


Q ss_pred             EEEeCCCcEEEEEeccCCccccCceeecCc------------eeeEEEEEEc----------CCEEEEecCCCcEEEeeC
Q 016224          243 FAGTQDGAILAWKFNVTTNCFEPAASLKGH------------SLAVVSLVVG----------ANKLYSGSMDNSIRVWNL  300 (393)
Q Consensus       243 ~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~------------~~~v~~l~~~----------~~~l~sg~~dg~i~iwd~  300 (393)
                      +..+.++.+.+|+.......  .......+            ......+..+          +..+++...++.+.+||+
T Consensus       228 ~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~  305 (373)
T d2madh_         228 VWPVYSGKILQADISAAGAT--NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG  305 (373)
T ss_pred             EEecCCceEEEEEcCCCeEE--EEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEEC
Confidence            77788999999987765321  01111100            0111122222          335566777889999999


Q ss_pred             CCcceeeEeccCccceEEEEEc--CC--EEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEE
Q 016224          301 ETLQCIQTLTEHTSVVMSLLCW--DQ--FLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLAL  361 (393)
Q Consensus       301 ~~~~~~~~~~~~~~~v~~l~~~--~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~  361 (393)
                      .+++.+..+. +...+..+.|+  ++  ++++++.|++|++||+.+++.+..+..+......+++
T Consensus       306 ~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~  369 (373)
T d2madh_         306 LVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSV  369 (373)
T ss_pred             CCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEE
Confidence            9999998886 55667888887  55  4568899999999999999988887766555334333

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.49  E-value=2.2e-12  Score=114.77  Aligned_cols=228  Identities=11%  Similarity=0.046  Sum_probs=143.7

Q ss_pred             EEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--c--eEEEEeCCCEEEEE--cCCeEEEEECCCCceee-ecCC
Q 016224          156 ITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG--E--VGCMISEGPWIFIG--VTNFVKAWNTQTNTDLS-LSGP  228 (393)
Q Consensus       156 i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--~--~~~~~~~~~~l~~~--~~~~i~v~d~~~~~~~~-~~~~  228 (393)
                      ++|++++++|++++.|++|.+||+.+++.+.++..+.  .  ...+.+++++++++  .++.|.+||+.+++... +...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            4789999999999999999999999999999887532  2  34455788887654  57899999999998762 2221


Q ss_pred             C------CcEEEEEEeCC--EEEEEe------------CCCcEEEEEeccCCccccCceeecCceeeEEEEEEc-CCEEE
Q 016224          229 V------GQVYAMAVGND--LLFAGT------------QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG-ANKLY  287 (393)
Q Consensus       229 ~------~~v~~l~~~~~--~l~~~~------------~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~  287 (393)
                      .      ..+..++++++  +++++.            .+..+.+|+..+...... +.... ....+..+... +..++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~  159 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP-VRTFP-MPRQVYLMRAADDGSLY  159 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC-SEEEE-CCSSCCCEEECTTSCEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeE-EEeee-ccCceEEEEecCCCEEE
Confidence            1      23457888888  555543            477889998887643211 11111 11122222332 33333


Q ss_pred             EecCCCcEEEeeCCCcceeeEeccCccc---------------------eEEE--EE--c--CCEEEEEeCCCcEEEEEc
Q 016224          288 SGSMDNSIRVWNLETLQCIQTLTEHTSV---------------------VMSL--LC--W--DQFLLSCSLDKTIKVWFA  340 (393)
Q Consensus       288 sg~~dg~i~iwd~~~~~~~~~~~~~~~~---------------------v~~l--~~--~--~~~l~s~s~dg~i~iwd~  340 (393)
                      +.+  ..+.+||+.+++.+..+..+...                     +...  ..  .  ...++++..+..+.+||.
T Consensus       160 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
T d1jmxb_         160 VAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL  237 (346)
T ss_dssp             EES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred             EeC--CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEEC
Confidence            333  46899999998888777543211                     0000  00  0  234555666778999999


Q ss_pred             CCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCceee
Q 016224          341 TDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVII  392 (393)
Q Consensus       341 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~l  392 (393)
                      .+......... .....+..+.++++..   +++... ++.|.+||+.++++
T Consensus       238 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~-~~~v~v~d~~~~~~  284 (346)
T d1jmxb_         238 KTGKTHTQEFA-DLTELYFTGLRSPKDP---NQIYGV-LNRLAKYDLKQRKL  284 (346)
T ss_dssp             TTCCEEEEEEE-ECSSCEEEEEECSSCT---TEEEEE-ESEEEEEETTTTEE
T ss_pred             CCCceEEEEee-cccceeEEEEEeCCCC---EEEEec-CCeEEEEECCCCcE
Confidence            87665544433 2334577777776654   455554 46899999998865

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.48  E-value=2.1e-12  Score=115.88  Aligned_cols=242  Identities=11%  Similarity=0.011  Sum_probs=153.6

Q ss_pred             ceEEeeEecCc--EEE----------ecCCCeEEEEECCCCcEEEEEecCCc-------CCEEEEEecCCCCEEEEEe--
Q 016224          111 DILCRNWVQGN--CMY----------GEKCKFLHSWTVGDGFKLLTQLEGHQ-------KVVSGITLPSGSDKLYSGS--  169 (393)
Q Consensus       111 ~i~c~~~~~~~--~~~----------g~~dg~i~vwd~~~~~~~~~~l~~h~-------~~I~~i~~s~~~~~l~s~s--  169 (393)
                      ....++|++++  +++          +..++.|++||+.++ +.+..+..+.       .....++|++++++++.++  
T Consensus        48 ~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~  126 (355)
T d2bbkh_          48 FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL-LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS  126 (355)
T ss_dssp             SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC-CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS
T ss_pred             CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCC-CEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC
Confidence            33467899875  332          345789999999998 7776665332       2234578999999888775  


Q ss_pred             CCCcEEEEECCCCeEEEEEecCCceEEEEe-CCCEEEEEcCCeEEEEECCCCcee-e------ecCCCCcEEEEEEeCC-
Q 016224          170 KDETVRVWDCASGQCAGVINLGGEVGCMIS-EGPWIFIGVTNFVKAWNTQTNTDL-S------LSGPVGQVYAMAVGND-  240 (393)
Q Consensus       170 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~i~v~d~~~~~~~-~------~~~~~~~v~~l~~~~~-  240 (393)
                      .+..+.+|+..+++.+..+........... ....++.+.|+...++........ .      ...+...+....+.++ 
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (355)
T d2bbkh_         127 PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA  206 (355)
T ss_dssp             SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT
T ss_pred             CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCC
Confidence            457899999999999988877655433322 233344455554444433322211 1      1122233444455554 


Q ss_pred             -EEEEEeCCCcEEEEEeccCCccccCceee----------cCceeeEEEEEEcCCEEEEecCC----------CcEEEee
Q 016224          241 -LLFAGTQDGAILAWKFNVTTNCFEPAASL----------KGHSLAVVSLVVGANKLYSGSMD----------NSIRVWN  299 (393)
Q Consensus       241 -~l~~~~~dg~I~vwd~~~~~~~~~~~~~~----------~~~~~~v~~l~~~~~~l~sg~~d----------g~i~iwd  299 (393)
                       .++.++.++.+++|++..+..........          .........+..++..++....+          ..|.+||
T Consensus       207 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d  286 (355)
T d2bbkh_         207 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD  286 (355)
T ss_dssp             TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE
T ss_pred             CeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEe
Confidence             88888999999999998764311111100          00111224445556665554332          4799999


Q ss_pred             CCCcceeeEeccCccceEEEEEc--CC--EEEEEeCCCcEEEEEcCCCcceEEEEeecC
Q 016224          300 LETLQCIQTLTEHTSVVMSLLCW--DQ--FLLSCSLDKTIKVWFATDSGNLEVTYTHNE  354 (393)
Q Consensus       300 ~~~~~~~~~~~~~~~~v~~l~~~--~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  354 (393)
                      ..+++.+.++.. ...+.+++++  ++  ++++++.|++|++||+++++.+..+..+..
T Consensus       287 ~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~  344 (355)
T d2bbkh_         287 AKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH  344 (355)
T ss_dssp             TTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS
T ss_pred             CCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCC
Confidence            999999888864 3457788887  44  456777899999999999988777655433

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=3.7e-10  Score=99.64  Aligned_cols=236  Identities=8%  Similarity=0.055  Sum_probs=149.7

Q ss_pred             ceeecceEEeeEecCc--EE-EecCCCeEEEEECCCCcEE--EEEecCCcCCEEEEEecCCCCEEEEEeC-CCcEEEEEC
Q 016224          106 AVIKTDILCRNWVQGN--CM-YGEKCKFLHSWTVGDGFKL--LTQLEGHQKVVSGITLPSGSDKLYSGSK-DETVRVWDC  179 (393)
Q Consensus       106 ~~~~~~i~c~~~~~~~--~~-~g~~dg~i~vwd~~~~~~~--~~~l~~h~~~I~~i~~s~~~~~l~s~s~-dg~v~iwd~  179 (393)
                      ..+...+..++|++++  ++ ++..|+.|++|++......  ......+...+..++|+|||++|++++. ++.|.+|+.
T Consensus        33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~  112 (333)
T d1ri6a_          33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL  112 (333)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecc
Confidence            3456688999999985  32 3556899999998754221  2122234556778999999999999885 678999998


Q ss_pred             CCCeEEEEEe---cCCce--EEEEeCCCEEEEE--cCCeEEEEECCCCcee-------eecCCCCcEEEEEEeCC---EE
Q 016224          180 ASGQCAGVIN---LGGEV--GCMISEGPWIFIG--VTNFVKAWNTQTNTDL-------SLSGPVGQVYAMAVGND---LL  242 (393)
Q Consensus       180 ~~~~~~~~~~---~~~~~--~~~~~~~~~l~~~--~~~~i~v~d~~~~~~~-------~~~~~~~~v~~l~~~~~---~l  242 (393)
                      ..........   ....+  ..+.++++.++++  .+..|.+|+.......       ...........+.|+++   .+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~  192 (333)
T d1ri6a_         113 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY  192 (333)
T ss_dssp             ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred             ccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEE
Confidence            8776554433   22222  3455678877765  4558999998775433       12234456788999887   44


Q ss_pred             EEEeCCCcEEEEEeccCCccccCceeec------CceeeEEEEEE--cCCE-EEEecCCCcEEEeeCCCcceeeEec---
Q 016224          243 FAGTQDGAILAWKFNVTTNCFEPAASLK------GHSLAVVSLVV--GANK-LYSGSMDNSIRVWNLETLQCIQTLT---  310 (393)
Q Consensus       243 ~~~~~dg~I~vwd~~~~~~~~~~~~~~~------~~~~~v~~l~~--~~~~-l~sg~~dg~i~iwd~~~~~~~~~~~---  310 (393)
                      .+....+...+++...............      ........+.+  ++++ ++++..++.+.+|++........+.   
T Consensus       193 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (333)
T d1ri6a_         193 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ  272 (333)
T ss_dssp             EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred             eeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEe
Confidence            5555677888888765433222111111      11222333444  5554 5566778899999987654433332   


Q ss_pred             cCccceEEEEEc--CCEEEEEe-CCCcEEEEEcC
Q 016224          311 EHTSVVMSLLCW--DQFLLSCS-LDKTIKVWFAT  341 (393)
Q Consensus       311 ~~~~~v~~l~~~--~~~l~s~s-~dg~i~iwd~~  341 (393)
                      .....+..++|+  |++|++++ .++.|++|++.
T Consensus       273 ~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         273 PTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             ECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            233455677887  77777665 46899999664

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.37  E-value=7.8e-12  Score=113.23  Aligned_cols=226  Identities=6%  Similarity=-0.025  Sum_probs=145.0

Q ss_pred             ecCCCeEEEEECCCCcEEEEEecCCcC-------CEEEEEecCCCCEEEEEe-CCCcEEEEECCCCeEEEEEecCCceEE
Q 016224          125 GEKCKFLHSWTVGDGFKLLTQLEGHQK-------VVSGITLPSGSDKLYSGS-KDETVRVWDCASGQCAGVINLGGEVGC  196 (393)
Q Consensus       125 g~~dg~i~vwd~~~~~~~~~~l~~h~~-------~I~~i~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~~~~  196 (393)
                      |..|+.|.+||..++ +.+..+..|..       ....++|+|||++|+++. .++.+.+||+.+++.+..+..+.....
T Consensus        92 g~~d~~v~v~D~~t~-~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~  170 (368)
T d1mdah_          92 GKRTDYVEVFDPVTF-LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI  170 (368)
T ss_dssp             SSEEEEEEEECTTTC-CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC
T ss_pred             cccCCeEEEEECCCC-cEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE
Confidence            456888999999998 77776654322       223589999999998876 579999999999999998877654433


Q ss_pred             EEeCC-CEEEEEcCCeEEEEECCCCcee-------eecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCce-
Q 016224          197 MISEG-PWIFIGVTNFVKAWNTQTNTDL-------SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAA-  267 (393)
Q Consensus       197 ~~~~~-~~l~~~~~~~i~v~d~~~~~~~-------~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~-  267 (393)
                      ..... .+++.+.|+.+.+++.......       ....+...+....+.++..+.....+.++++++........... 
T Consensus       171 ~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~  250 (368)
T d1mdah_         171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAID  250 (368)
T ss_dssp             EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCC
T ss_pred             ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecc
Confidence            33323 3333457788888877655433       12223344455666666333344566677777665432110000 


Q ss_pred             ---------eecCceeeEEEEEEcCCEEEEecC---------CCcEEEeeCCCcceeeEeccCccceEEEEEc--CC--E
Q 016224          268 ---------SLKGHSLAVVSLVVGANKLYSGSM---------DNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQ--F  325 (393)
Q Consensus       268 ---------~~~~~~~~v~~l~~~~~~l~sg~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~--~  325 (393)
                               ...........+..+++.++....         ...|.+||..+++.+.++.. ...+.++.++  ++  .
T Consensus       251 ~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~l  329 (368)
T d1mdah_         251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDN  329 (368)
T ss_dssp             SSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEE
T ss_pred             cccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEE
Confidence                     001111223455566665544322         23599999999999888864 4567788887  44  3


Q ss_pred             EEEEeCCCcEEEEEcCCCcceEEEEee
Q 016224          326 LLSCSLDKTIKVWFATDSGNLEVTYTH  352 (393)
Q Consensus       326 l~s~s~dg~i~iwd~~~~~~~~~~~~~  352 (393)
                      ++++..|+.|++||..+++.+..+...
T Consensus       330 y~s~~~~~~v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         330 YANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             EEEeCCCCeEEEEECCCCCEEEEEECC
Confidence            567778999999999998877666543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.21  E-value=2.1e-09  Score=100.21  Aligned_cols=133  Identities=8%  Similarity=0.007  Sum_probs=96.2

Q ss_pred             EeeEecCcEEEecCCCeEEEEECCCCcEEEEEec-----CCcCCEEEEEecCCCCEEEEEeC---------CCcEEEEEC
Q 016224          114 CRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLE-----GHQKVVSGITLPSGSDKLYSGSK---------DETVRVWDC  179 (393)
Q Consensus       114 c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~-----~h~~~I~~i~~s~~~~~l~s~s~---------dg~v~iwd~  179 (393)
                      .+.|.++..+.-..++.|.+||+.++ +....+.     .|...|.++.||||+++|+.++.         ++.+.|||+
T Consensus        21 ~~~W~~d~~~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~   99 (470)
T d2bgra1          21 SLRWISDHEYLYKQENNILVFNAEYG-NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (470)
T ss_dssp             CCEECSSSEEEEESSSCEEEEETTTC-CEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CCEeCCCCEEEEEcCCcEEEEECCCC-CEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEEC
Confidence            46687777666667889999999998 4444443     45688999999999999998853         568899999


Q ss_pred             CCCeEEEEEecCCce--EEEEeCCCEEEEEcCCeEEEEECCCCceeeecC-------------------CCCcEEEEEEe
Q 016224          180 ASGQCAGVINLGGEV--GCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSG-------------------PVGQVYAMAVG  238 (393)
Q Consensus       180 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~-------------------~~~~v~~l~~~  238 (393)
                      .+++..........+  ..+.++|+.++...++.+.+|+..+++...+..                   ..+....+.|+
T Consensus       100 ~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wS  179 (470)
T d2bgra1         100 NKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWS  179 (470)
T ss_dssp             TTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC
T ss_pred             CCCcccccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEEC
Confidence            998865443344433  345579999999999999999999887653321                   11233457788


Q ss_pred             CC--EEEEEeC
Q 016224          239 ND--LLFAGTQ  247 (393)
Q Consensus       239 ~~--~l~~~~~  247 (393)
                      ||  .|+....
T Consensus       180 PDGk~ia~~~~  190 (470)
T d2bgra1         180 PNGTFLAYAQF  190 (470)
T ss_dssp             TTSSEEEEEEE
T ss_pred             CCCCccceeEe
Confidence            88  5555543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.02  E-value=6.4e-10  Score=101.30  Aligned_cols=257  Identities=9%  Similarity=-0.028  Sum_probs=153.1

Q ss_pred             EEEecCCCeEEEEECCCCcEEEEEecC------------------------------CcCCEEEEEecCCCCEEEEEe-C
Q 016224          122 CMYGEKCKFLHSWTVGDGFKLLTQLEG------------------------------HQKVVSGITLPSGSDKLYSGS-K  170 (393)
Q Consensus       122 ~~~g~~dg~i~vwd~~~~~~~~~~l~~------------------------------h~~~I~~i~~s~~~~~l~s~s-~  170 (393)
                      +++|+.+|.|++|++.++ +.++++..                              |.-.+....++|||++|++.. .
T Consensus        14 f~Sgg~sG~V~V~dlpS~-r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~   92 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSM-RELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA   92 (441)
T ss_dssp             EEECBTTCCEEEEEETTT-EEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEeCCCCCcEEEEeCCCC-cEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence            446889999999999998 77777532                              333455566689999997665 6


Q ss_pred             CCcEEEEECCCCeEEEEEecC--CceE--EEEeCCC--EEEEEcCCeE------------------EEEECCCCceeeec
Q 016224          171 DETVRVWDCASGQCAGVINLG--GEVG--CMISEGP--WIFIGVTNFV------------------KAWNTQTNTDLSLS  226 (393)
Q Consensus       171 dg~v~iwd~~~~~~~~~~~~~--~~~~--~~~~~~~--~l~~~~~~~i------------------~v~d~~~~~~~~~~  226 (393)
                      +..|.++|++++++...+..+  ....  .+.++++  +++...+..+                  ..+|..+.+.....
T Consensus        93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI  172 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV  172 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence            789999999999998877653  2332  3334666  4554444433                  45777777665222


Q ss_pred             CCCCcEEEEEEeCC--EEEEEeCCC-cEEEEEeccCCccccCceeecCc-eeeEEEEEEcCCEEEEecCCCcEEEeeCCC
Q 016224          227 GPVGQVYAMAVGND--LLFAGTQDG-AILAWKFNVTTNCFEPAASLKGH-SLAVVSLVVGANKLYSGSMDNSIRVWNLET  302 (393)
Q Consensus       227 ~~~~~v~~l~~~~~--~l~~~~~dg-~I~vwd~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~  302 (393)
                      ........+.++++  ++++.+.+. .+..++..+..    ....+... ......+..+++++.. +.++.+.+++...
T Consensus       173 ~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~----~~d~i~v~n~p~~~~~~~dGk~~~v-~~~~v~vvd~~~~  247 (441)
T d1qnia2         173 IVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRN----DRDWVVVFNVERIAAAVKAGNFKTI-GDSKVPVVDGRGE  247 (441)
T ss_dssp             EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCS----SBCEEEEEEHHHHHHHHHTTCCBCC-TTCCCCEEECSSS
T ss_pred             ecCCCccceEECCCCCEEEEEecCCCceEEEeccCcc----eEEEEEeCCccceEEEecCCCEEEe-CCCCcEEEEcccC
Confidence            23345677888887  555555443 33333322221    01100000 0000011124555544 4467888888887


Q ss_pred             cceeeEeccCccceEEEEEc--CCEE-EEEeCCCcEEEEEcCCCcce--------EEE-EeecCCccEEEEEeeeCCCCC
Q 016224          303 LQCIQTLTEHTSVVMSLLCW--DQFL-LSCSLDKTIKVWFATDSGNL--------EVT-YTHNEEHGVLALCGMPDSEGK  370 (393)
Q Consensus       303 ~~~~~~~~~~~~~v~~l~~~--~~~l-~s~s~dg~i~iwd~~~~~~~--------~~~-~~~~~~~~v~~~~~~~~~~~~  370 (393)
                      .+.+..+.....+ ..+.++  |+++ +++..+++|.+||+.+....        ..+ .........+...|.+.   +
T Consensus       248 ~~v~~~IPvgksP-hGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~---g  323 (441)
T d1qnia2         248 SEFTRYIPVPKNP-HGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGR---G  323 (441)
T ss_dssp             CSSEEEECCBSSC-CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSS---S
T ss_pred             CceEEEEeCCCCc-cCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCC---c
Confidence            7788888765554 345555  7765 56778999999998653211        111 11111222344455443   3


Q ss_pred             cEEEEEeCCCeEEEEeCC
Q 016224          371 PVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       371 ~~l~s~s~dg~I~iwd~~  388 (393)
                      ..+.+...|.+|..|++.
T Consensus       324 ~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         324 NAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             EEEEEETTTTEEEEEEHH
T ss_pred             eEEEcccccceEEEeccc
Confidence            377788889999999974

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.77  E-value=7.4e-06  Score=70.91  Aligned_cols=235  Identities=9%  Similarity=-0.006  Sum_probs=142.3

Q ss_pred             EEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEE--EeCCCEEEEE-cCCeEEEEEC
Q 016224          141 KLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCM--ISEGPWIFIG-VTNFVKAWNT  217 (393)
Q Consensus       141 ~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~-~~~~i~v~d~  217 (393)
                      +.+..+... ..+..++++|||+++++...+++|..|+.. ++.............+  .++++++++. .++.+..++.
T Consensus        19 ~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~   96 (302)
T d2p4oa1          19 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSL   96 (302)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             cEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEe
Confidence            555666432 258899999999999999999999999865 4444444555555444  3588888876 4556776665


Q ss_pred             CCC--cee--eecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCcccc------CceeecCceeeEEEEEEcCCE
Q 016224          218 QTN--TDL--SLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFE------PAASLKGHSLAVVSLVVGANK  285 (393)
Q Consensus       218 ~~~--~~~--~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~------~~~~~~~~~~~v~~l~~~~~~  285 (393)
                      ...  ...  ...........+.+.++  ++++-..++.+..++.........      ..............+.++++.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~  176 (302)
T d2p4oa1          97 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNF  176 (302)
T ss_dssp             ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTE
T ss_pred             cccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCc
Confidence            432  222  22344566888999887  666667778887777665421100      000111222344567777664


Q ss_pred             -EEEecCCCcEEEeeCCCcceeeEec--cCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEE
Q 016224          286 -LYSGSMDNSIRVWNLETLQCIQTLT--EHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLA  360 (393)
Q Consensus       286 -l~sg~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  360 (393)
                       +++.+..+.|..++...........  ........++++  ++++++...+++|..++.. ++..........-....+
T Consensus       177 l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~  255 (302)
T d2p4oa1         177 LYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTA  255 (302)
T ss_dssp             EEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEE
T ss_pred             eeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceE
Confidence             5566778899988876543222111  112233456666  6777777788999998764 332222222233345788


Q ss_pred             EEeeeCCCCCcEEEEEeC
Q 016224          361 LCGMPDSEGKPVLLCSCN  378 (393)
Q Consensus       361 ~~~~~~~~~~~~l~s~s~  378 (393)
                      ++|...+.+.+.|+.++.
T Consensus       256 vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         256 VAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             EEECCSTTTTTEEEEEEC
T ss_pred             EEEcCCCCCCCEEEEECC
Confidence            999766555556665544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.74  E-value=7.3e-06  Score=70.08  Aligned_cols=227  Identities=12%  Similarity=0.178  Sum_probs=141.4

Q ss_pred             CEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCC--------ceE-EEEeC-CCEEEEE--cCCeEEEEECCC
Q 016224          152 VVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGG--------EVG-CMISE-GPWIFIG--VTNFVKAWNTQT  219 (393)
Q Consensus       152 ~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~--------~~~-~~~~~-~~~l~~~--~~~~i~v~d~~~  219 (393)
                      .-..|+++++++++++-.....|++||.+ ++.+..+....        +.. ....+ +..+++.  ..+.|..++...
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            46789999999988776777899999965 67776663211        111 22233 3444443  344777777654


Q ss_pred             Cceeeec-CCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceee--cCceeeEEEEEEc--CCEEEEecCC
Q 016224          220 NTDLSLS-GPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASL--KGHSLAVVSLVVG--ANKLYSGSMD  292 (393)
Q Consensus       220 ~~~~~~~-~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~--~~~~~~v~~l~~~--~~~l~sg~~d  292 (393)
                      .....+. ........+++.++  ++++....+.+.+++....     .+..+  ..+......++++  ++.+++....
T Consensus       103 ~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~-----~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~  177 (279)
T d1q7fa_         103 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-----VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA  177 (279)
T ss_dssp             CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-----EEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred             cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc-----eeecccccccccccceeeeccceeEEeeeccc
Confidence            4333332 34456778888776  5666566677777765432     22222  2344455666665  4577777788


Q ss_pred             CcEEEeeCCCcceeeEec--cCccceEEEEEc--CCEEEEEeC-CCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCC
Q 016224          293 NSIRVWNLETLQCIQTLT--EHTSVVMSLLCW--DQFLLSCSL-DKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDS  367 (393)
Q Consensus       293 g~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~--~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  367 (393)
                      +.|++||.. ++.+.++.  +.......|+++  ++.+++-.. +..|.+|+. +++.+..+...........++..+++
T Consensus       178 ~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG  255 (279)
T d1q7fa_         178 HCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDG  255 (279)
T ss_dssp             TEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTT
T ss_pred             cceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCC
Confidence            999999964 67777763  234456778886  666665443 457999985 45545544443333346777776654


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCce
Q 016224          368 EGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       368 ~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                          .|+.++.++.|++|.....
T Consensus       256 ----~l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         256 ----SVVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             ----EEEEEETTTEEEEEECSCC
T ss_pred             ----cEEEEeCCCeEEEEEeeee
Confidence                2555668899999998764

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.57  E-value=1.5e-06  Score=80.26  Aligned_cols=78  Identities=9%  Similarity=-0.069  Sum_probs=61.5

Q ss_pred             eecceEEeeEecCcE--EEe---------cCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEE
Q 016224          108 IKTDILCRNWVQGNC--MYG---------EKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRV  176 (393)
Q Consensus       108 ~~~~i~c~~~~~~~~--~~g---------~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~i  176 (393)
                      +...|.+..|++|+.  +++         +.++.+.|||+.++ + +..+..|...+..+.|||||++||... ++.+.+
T Consensus        60 ~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~-~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~  136 (470)
T d2bgra1          60 FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR-Q-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYV  136 (470)
T ss_dssp             SSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT-E-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEE
T ss_pred             ccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC-c-ccccccCCccccccccccCcceeeEee-cccceE
Confidence            334688899998853  333         34678899999987 4 556888999999999999999999965 678999


Q ss_pred             EECCCCeEEEEE
Q 016224          177 WDCASGQCAGVI  188 (393)
Q Consensus       177 wd~~~~~~~~~~  188 (393)
                      |+..+++..+..
T Consensus       137 ~~~~~g~~~~~t  148 (470)
T d2bgra1         137 KIEPNLPSYRIT  148 (470)
T ss_dssp             ESSTTSCCEECC
T ss_pred             EECCCCceeeee
Confidence            999888765543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.54  E-value=7.9e-07  Score=80.55  Aligned_cols=222  Identities=10%  Similarity=0.056  Sum_probs=133.1

Q ss_pred             eEEeeEecCc--EE-EecCCCeEEEEECCCCcEEEEEec-CCcCCEEEEEecCCCC--EEEEEeCCC-------------
Q 016224          112 ILCRNWVQGN--CM-YGEKCKFLHSWTVGDGFKLLTQLE-GHQKVVSGITLPSGSD--KLYSGSKDE-------------  172 (393)
Q Consensus       112 i~c~~~~~~~--~~-~g~~dg~i~vwd~~~~~~~~~~l~-~h~~~I~~i~~s~~~~--~l~s~s~dg-------------  172 (393)
                      ..+....+|+  ++ ....+..|.++|+.+. +....+. .+...+..++|+|+++  |++..+.+.             
T Consensus        74 ~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~-k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~  152 (441)
T d1qnia2          74 ISMTDGRYDGKYLFINDKANTRVARIRLDIM-KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLD  152 (441)
T ss_dssp             EEEETTEEEEEEEEEEETTTTEEEEEETTTT-EEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGG
T ss_pred             cceecccCCCCEEEEEcCCCCEEEEEECCCC-cEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccc
Confidence            3444445443  32 3567889999999998 6666654 4678999999999998  444444332             


Q ss_pred             ----cEEEEECCCCeEEEEEecCCce--EEEEeCCCEEEEEc--------------------------------------
Q 016224          173 ----TVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIGV--------------------------------------  208 (393)
Q Consensus       173 ----~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~--------------------------------------  208 (393)
                          .+..+|..+.+....+......  ..+.+++++++++.                                      
T Consensus       153 ~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~  232 (441)
T d1qnia2         153 NSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFK  232 (441)
T ss_dssp             GEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCB
T ss_pred             cccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEE
Confidence                2356888888887777655443  33446777666542                                      


Q ss_pred             ----CCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccc----cCceeecCc---ee
Q 016224          209 ----TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCF----EPAASLKGH---SL  274 (393)
Q Consensus       209 ----~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~----~~~~~~~~~---~~  274 (393)
                          ++.+.+++....+......-......+.++|+   +++++..+++|.+||+......+    .....+.++   .-
T Consensus       233 ~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~gl  312 (441)
T d1qnia2         233 TIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGL  312 (441)
T ss_dssp             CCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCS
T ss_pred             EeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeeccccc
Confidence                22334444443333322223344567889998   55677889999999987632111    111111111   11


Q ss_pred             eEEEEEEcC--CEEEEecCCCcEEEeeCCC----------cceeeEe-----ccCccceEEEEEc--CCEEEEE---eCC
Q 016224          275 AVVSLVVGA--NKLYSGSMDNSIRVWNLET----------LQCIQTL-----TEHTSVVMSLLCW--DQFLLSC---SLD  332 (393)
Q Consensus       275 ~v~~l~~~~--~~l~sg~~dg~i~iwd~~~----------~~~~~~~-----~~~~~~v~~l~~~--~~~l~s~---s~d  332 (393)
                      .....+|++  +.+.+...|..|..|++..          ...+..+     .+|...+.+..++  |++|+++   |.|
T Consensus       313 gplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~d  392 (441)
T d1qnia2         313 GPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKD  392 (441)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGG
T ss_pred             CcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccc
Confidence            123345664  4677788999999999742          1233344     3455444444444  7899999   555


Q ss_pred             Cc
Q 016224          333 KT  334 (393)
Q Consensus       333 g~  334 (393)
                      ..
T Consensus       393 r~  394 (441)
T d1qnia2         393 RF  394 (441)
T ss_dssp             GS
T ss_pred             cC
Confidence            44

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.47  E-value=4.8e-05  Score=64.00  Aligned_cols=228  Identities=11%  Similarity=0.031  Sum_probs=128.0

Q ss_pred             CCEEEEEecCCCCEEEEE-eCCCcEEEEECCCCeEEEE-EecC-C-ceEEEEeCCCEEEEEcCC-eEEEEECCCCceeee
Q 016224          151 KVVSGITLPSGSDKLYSG-SKDETVRVWDCASGQCAGV-INLG-G-EVGCMISEGPWIFIGVTN-FVKAWNTQTNTDLSL  225 (393)
Q Consensus       151 ~~I~~i~~s~~~~~l~s~-s~dg~v~iwd~~~~~~~~~-~~~~-~-~~~~~~~~~~~l~~~~~~-~i~v~d~~~~~~~~~  225 (393)
                      ..-.+|++++++++.++. +..+.+..++..+...... .... . .-..+..++.++++...+ .+++++.........
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~   93 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP   93 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee
Confidence            345899999999866654 4456677776554322221 1111 1 123344677777776555 555555444444433


Q ss_pred             cCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEE--cCCEEEEecCCCcEEEeeCC
Q 016224          226 SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVV--GANKLYSGSMDNSIRVWNLE  301 (393)
Q Consensus       226 ~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~sg~~dg~i~iwd~~  301 (393)
                      .........++++++  ++++-..+..+..++.........   ...+ ......+++  +++.+++...++.|..+|..
T Consensus        94 ~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~---~~~~-~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~  169 (260)
T d1rwia_          94 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL---PFTG-LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE  169 (260)
T ss_dssp             CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEEC---CCCS-CCSCCEEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred             eeeeeecccccccccceeEeeccccccccccccccceeeee---eecc-cCCcceeeecCCCCEeeeccccccccccccc
Confidence            344466788998776  555555566666666544321111   1111 111234454  46677777888899999987


Q ss_pred             CcceeeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC
Q 016224          302 TLQCIQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND  379 (393)
Q Consensus       302 ~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d  379 (393)
                      .................|+++  ++++++....+.|..++.....  ........-.....+++.+++   .++++-..+
T Consensus       170 ~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~--~~~~~~~~~~~P~~i~~d~~g---~l~vad~~~  244 (260)
T d1rwia_         170 SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT--STVLPFTGLNTPLAVAVDSDR---TVYVADRGN  244 (260)
T ss_dssp             TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC--CEECCCCSCCCEEEEEECTTC---CEEEEEGGG
T ss_pred             cceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe--EEEEccCCCCCeEEEEEeCCC---CEEEEECCC
Confidence            544333322344456788886  5677777777888888764332  222222222345677776543   377776677


Q ss_pred             CeEEEEeC
Q 016224          380 NSVRFYDL  387 (393)
Q Consensus       380 g~I~iwd~  387 (393)
                      +.|+.++.
T Consensus       245 ~rI~~i~~  252 (260)
T d1rwia_         245 DRVVKLTS  252 (260)
T ss_dssp             TEEEEECC
T ss_pred             CEEEEEeC
Confidence            77776654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=0.00036  Score=58.27  Aligned_cols=226  Identities=11%  Similarity=-0.000  Sum_probs=126.1

Q ss_pred             eEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCC---cEEEEECCCCeEEEEEecCCceE--EEEeCCCEE
Q 016224          130 FLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDE---TVRVWDCASGQCAGVINLGGEVG--CMISEGPWI  204 (393)
Q Consensus       130 ~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg---~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~l  204 (393)
                      .|.|-|.+.. ... .+..+...+..-+|||||+.||-.....   .+.+.+...+.............  .+.++++.+
T Consensus        20 ~l~i~d~dG~-~~~-~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYDGY-NQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETTSC-SCE-EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCCCC-CcE-EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCee
Confidence            5778787643 222 3334567788999999999998775543   47777877777655555544433  344678877


Q ss_pred             EEE--cCC--eEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEE
Q 016224          205 FIG--VTN--FVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVV  277 (393)
Q Consensus       205 ~~~--~~~--~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~  277 (393)
                      +..  ..+  .+..+.....................++.+   .+++...++...+|.......   .............
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~---~~~~~~~~~~~~~  174 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG---APQRITWEGSQNQ  174 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS---CCEECCCSSSEEE
T ss_pred             eEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccc---cceeeeccccccc
Confidence            764  222  344444444444444444444445555544   666666777665555544332   1222233334444


Q ss_pred             EEEE--cCCEEEEec-CCCcEE--EeeCCCcceeeEeccCccceEEEEEc--CCEEEEEeC---CCcEEEEEcCCCcceE
Q 016224          278 SLVV--GANKLYSGS-MDNSIR--VWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCSL---DKTIKVWFATDSGNLE  347 (393)
Q Consensus       278 ~l~~--~~~~l~sg~-~dg~i~--iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~---dg~i~iwd~~~~~~~~  347 (393)
                      ...+  ++..++..+ ..+...  +.|...+..  .+..+........|+  |+.|+-.+.   ...|.++++.... ..
T Consensus       175 ~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-~~  251 (269)
T d2hqsa1         175 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KA  251 (269)
T ss_dssp             EEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EE
T ss_pred             ccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EE
Confidence            4445  455555444 444444  445544433  333344555666777  677664443   3468888886443 33


Q ss_pred             EEEeecCCccEEEEEeee
Q 016224          348 VTYTHNEEHGVLALCGMP  365 (393)
Q Consensus       348 ~~~~~~~~~~v~~~~~~~  365 (393)
                      .+...  ...+...+|+|
T Consensus       252 ~lt~~--~g~~~~p~WSP  267 (269)
T d2hqsa1         252 RLPAT--DGQVKFPAWSP  267 (269)
T ss_dssp             ECCCS--SSEEEEEEECC
T ss_pred             EEeCC--CCcEEeEEeCC
Confidence            33333  23466778876

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.39  E-value=0.00011  Score=65.02  Aligned_cols=264  Identities=11%  Similarity=0.056  Sum_probs=135.4

Q ss_pred             EEEec--CCCeEEEEE--CCCC-cEEEEEe-cCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCC-CeEEEEE--ecCC
Q 016224          122 CMYGE--KCKFLHSWT--VGDG-FKLLTQL-EGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCAS-GQCAGVI--NLGG  192 (393)
Q Consensus       122 ~~~g~--~dg~i~vwd--~~~~-~~~~~~l-~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~--~~~~  192 (393)
                      ++.|+  ..+.|+++.  .+++ ..++... ......+..|+|++++++|+++.. +.+..|.+.. +......  ....
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~   83 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCC
Confidence            45564  355676554  4454 1222222 234556678999999999998765 4677777654 2222221  1111


Q ss_pred             ce--EEEEeCCCE--EEEE--cCCeEEEEEC------------CCCcee------eecCCCCcEEEEEEeCC--EEEEEe
Q 016224          193 EV--GCMISEGPW--IFIG--VTNFVKAWNT------------QTNTDL------SLSGPVGQVYAMAVGND--LLFAGT  246 (393)
Q Consensus       193 ~~--~~~~~~~~~--l~~~--~~~~i~v~d~------------~~~~~~------~~~~~~~~v~~l~~~~~--~l~~~~  246 (393)
                      ..  ..+.++++.  +++.  ..+.|..+.+            .....+      ........+.++.|+|+  +++++.
T Consensus        84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d  163 (365)
T d1jofa_          84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee
Confidence            11  111234442  2222  1234443332            211111      11123345789999998  555554


Q ss_pred             -CCCcEEEEEeccCCccccCceee--cCceeeEEEEEEc--CCEE-EEecCCCcEEEeeCCCcceeeEec----------
Q 016224          247 -QDGAILAWKFNVTTNCFEPAASL--KGHSLAVVSLVVG--ANKL-YSGSMDNSIRVWNLETLQCIQTLT----------  310 (393)
Q Consensus       247 -~dg~I~vwd~~~~~~~~~~~~~~--~~~~~~v~~l~~~--~~~l-~sg~~dg~i~iwd~~~~~~~~~~~----------  310 (393)
                       ....|.+|+....... ......  .........+.++  ++++ ++...+++|.+|++...+......          
T Consensus       164 ~g~d~v~~~~~~~~g~~-~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~  242 (365)
T d1jofa_         164 LTANKLWTHRKLASGEV-ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG  242 (365)
T ss_dssp             TTTTEEEEEEECTTSCE-EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred             CCCCEEEEEEccCCCce-eeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccc
Confidence             4567888886643221 111111  1223445667775  4555 556678999999987654322111          


Q ss_pred             ---------cCccceEEEEEc--CCEEEEEeC-C-----CcEEEEEcCCCcceEEEEe----ecCCccEEEEEeeeCCCC
Q 016224          311 ---------EHTSVVMSLLCW--DQFLLSCSL-D-----KTIKVWFATDSGNLEVTYT----HNEEHGVLALCGMPDSEG  369 (393)
Q Consensus       311 ---------~~~~~v~~l~~~--~~~l~s~s~-d-----g~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~  369 (393)
                               .+......+.++  +++|+++.. +     ..|..|++.....+.....    .........+++.|.  +
T Consensus       243 ~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~--~  320 (365)
T d1jofa_         243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW--S  320 (365)
T ss_dssp             CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT--C
T ss_pred             ccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCC--C
Confidence                     111223456665  778776642 2     2377888766544433221    111223455666652  2


Q ss_pred             CcEEEE-EeCCCeEEEEeCCc
Q 016224          370 KPVLLC-SCNDNSVRFYDLPS  389 (393)
Q Consensus       370 ~~~l~s-~s~dg~I~iwd~~s  389 (393)
                      +++|++ ...++.|.+|++..
T Consensus       321 G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         321 DEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             TTEEEEECSSSCEEEEEEEET
T ss_pred             CCEEEEEeCCCCeEEEEEEeC
Confidence            335554 46789999998754

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.35  E-value=0.00019  Score=62.04  Aligned_cols=215  Identities=11%  Similarity=0.040  Sum_probs=129.3

Q ss_pred             CCeEEEEECCCCcEEEEEecCC----cCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecC-C------ceEE
Q 016224          128 CKFLHSWTVGDGFKLLTQLEGH----QKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLG-G------EVGC  196 (393)
Q Consensus       128 dg~i~vwd~~~~~~~~~~l~~h----~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~------~~~~  196 (393)
                      ++.|..||..++ +........    ...-..|+|.++++.|+++.....|...+.+........... .      .-..
T Consensus        45 ~g~I~r~d~~~~-~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~  123 (314)
T d1pjxa_          45 AGEILRIDLKTG-KKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA  123 (314)
T ss_dssp             CCEEEEECTTTC-CEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEE
T ss_pred             CCEEEEEECCCC-cEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEE
Confidence            467888998877 332222222    233568999999998888888778888998755432211111 1      1133


Q ss_pred             EEeCCCEEEEEcC----------------CeEEEEECCCCceeeecCCCCcEEEEEEeCC-------EEEEEeCCCcEEE
Q 016224          197 MISEGPWIFIGVT----------------NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-------LLFAGTQDGAILA  253 (393)
Q Consensus       197 ~~~~~~~l~~~~~----------------~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~-------~l~~~~~dg~I~v  253 (393)
                      +.+++.+.++...                +.|..++.. ++...+.......+.++|+++       ++++-+..+.|..
T Consensus       124 ~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~  202 (314)
T d1pjxa_         124 FDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWS  202 (314)
T ss_dssp             ECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEE
T ss_pred             ECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEE
Confidence            4456776665421                234344432 233333333334467777653       4455567888999


Q ss_pred             EEeccCCccc--cCceeecC-ceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcC--C-E
Q 016224          254 WKFNVTTNCF--EPAASLKG-HSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD--Q-F  325 (393)
Q Consensus       254 wd~~~~~~~~--~~~~~~~~-~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~-~  325 (393)
                      ||+.......  +....+.. .....-.++++  +++.++....+.|.+||.+.++.+..+.......++++|.+  + +
T Consensus       203 ~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~l  282 (314)
T d1pjxa_         203 YDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTI  282 (314)
T ss_dssp             EEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEE
T ss_pred             eeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEE
Confidence            9886542110  01111111 11223455664  67777777789999999998888888877667788999973  3 5


Q ss_pred             EEEEeCCCcEEEEEcCCCc
Q 016224          326 LLSCSLDKTIKVWFATDSG  344 (393)
Q Consensus       326 l~s~s~dg~i~iwd~~~~~  344 (393)
                      +++.+.++.|..+++....
T Consensus       283 yVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         283 FVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             EEEETTTTEEEEEECSSCB
T ss_pred             EEEECCCCcEEEEECCCCC
Confidence            6677778888888876444

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.33  E-value=0.00046  Score=59.55  Aligned_cols=228  Identities=9%  Similarity=0.027  Sum_probs=126.5

Q ss_pred             CCEEEEEecCCCCEEEEEeC-------CCcEEEEECCCCeEEEEEecC------Cce-EEEEeCCCEEEEE-cCCeEEEE
Q 016224          151 KVVSGITLPSGSDKLYSGSK-------DETVRVWDCASGQCAGVINLG------GEV-GCMISEGPWIFIG-VTNFVKAW  215 (393)
Q Consensus       151 ~~I~~i~~s~~~~~l~s~s~-------dg~v~iwd~~~~~~~~~~~~~------~~~-~~~~~~~~~l~~~-~~~~i~v~  215 (393)
                      .....++|.++|+++++...       +|+|..||..+++........      .+. ..+..++..++++ ..+.|..+
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            34556789999987776433       467899998887654433211      111 2233466655554 55678888


Q ss_pred             ECCCCceeeecC-CC----CcEEEEEEeCC--EEEEEeC---------------CCcEEEEEeccCCccccCceeecCce
Q 016224          216 NTQTNTDLSLSG-PV----GQVYAMAVGND--LLFAGTQ---------------DGAILAWKFNVTTNCFEPAASLKGHS  273 (393)
Q Consensus       216 d~~~~~~~~~~~-~~----~~v~~l~~~~~--~l~~~~~---------------dg~I~vwd~~~~~~~~~~~~~~~~~~  273 (393)
                      +........... ..    .....++++++  +.++-..               .|.|..++....     . ..+...-
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~-----~-~~~~~~~  171 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ-----M-IQVDTAF  171 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC-----E-EEEEEEE
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCc-----e-eEeeCCc
Confidence            887765442211 11    13567888877  3333211               122333322111     0 1111111


Q ss_pred             eeEEEEEE--cCC-----EEEEecCCCcEEEeeCCCccee------eEecc-CccceEEEEEc--CCEEEEEeCCCcEEE
Q 016224          274 LAVVSLVV--GAN-----KLYSGSMDNSIRVWNLETLQCI------QTLTE-HTSVVMSLLCW--DQFLLSCSLDKTIKV  337 (393)
Q Consensus       274 ~~v~~l~~--~~~-----~l~sg~~dg~i~iwd~~~~~~~------~~~~~-~~~~v~~l~~~--~~~l~s~s~dg~i~i  337 (393)
                      ..-..+++  +++     ++++-+..+.|..||+.....+      ..+.. +....-.++++  +++.++....+.|.+
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~  251 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence            11223444  333     3455567888999887543222      12222 12233567776  777777778899999


Q ss_pred             EEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCC
Q 016224          338 WFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLP  388 (393)
Q Consensus       338 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~  388 (393)
                      ||...+.....+....  .....++|.++.  +.++++.+.+|.|...+++
T Consensus       252 ~dp~~g~~~~~i~~p~--~~~t~~afg~d~--~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         252 FGPDGGQPKMRIRCPF--EKPSNLHFKPQT--KTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             ECTTCBSCSEEEECSS--SCEEEEEECTTS--SEEEEEETTTTEEEEEECS
T ss_pred             EeCCCCEEEEEEECCC--CCEEEEEEeCCC--CEEEEEECCCCcEEEEECC
Confidence            9987655444444322  346788886643  3467777888999888864

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.29  E-value=0.00012  Score=61.56  Aligned_cols=222  Identities=9%  Similarity=-0.006  Sum_probs=123.6

Q ss_pred             EEeeEecC-cEEE--ecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 016224          113 LCRNWVQG-NCMY--GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN  189 (393)
Q Consensus       113 ~c~~~~~~-~~~~--g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  189 (393)
                      ..+++.++ .++.  ....+.+..++............+. .....|+++++++++++....+.+++++-.+...+....
T Consensus        17 ~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~   95 (260)
T d1rwia_          17 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD   95 (260)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSC-CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC
T ss_pred             CEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCc-cCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee
Confidence            45566544 3333  3345667766655442333333322 345678999999888777777777777655555443333


Q ss_pred             cCCceEEEE--eCCCEEEEE-cCCeEEEEECCCCceeee-cCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccc
Q 016224          190 LGGEVGCMI--SEGPWIFIG-VTNFVKAWNTQTNTDLSL-SGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCF  263 (393)
Q Consensus       190 ~~~~~~~~~--~~~~~l~~~-~~~~i~v~d~~~~~~~~~-~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~  263 (393)
                      .......+.  +++.++++. ....+..++......... .........++++++  ++++...++.|..++......  
T Consensus        96 ~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~--  173 (260)
T d1rwia_          96 GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ--  173 (260)
T ss_dssp             SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE--
T ss_pred             eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccccee--
Confidence            223333332  566766665 444677777665543322 222345568888776  667777788899988765421  


Q ss_pred             cCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEec-cCccceEEEEEc--CCEEEEEeCCCcEEEE
Q 016224          264 EPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLT-EHTSVVMSLLCW--DQFLLSCSLDKTIKVW  338 (393)
Q Consensus       264 ~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~--~~~l~s~s~dg~i~iw  338 (393)
                        .............++++  ++++++....+.|..++..... ...+. ..-.....|+++  +.++++-..+++|+.+
T Consensus       174 --~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i  250 (260)
T d1rwia_         174 --VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL  250 (260)
T ss_dssp             --EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             --eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEE
Confidence              11111222334566765  5677777778888888875433 22222 222345677776  4555555556666655


Q ss_pred             Ec
Q 016224          339 FA  340 (393)
Q Consensus       339 d~  340 (393)
                      +.
T Consensus       251 ~~  252 (260)
T d1rwia_         251 TS  252 (260)
T ss_dssp             CC
T ss_pred             eC
Confidence            43

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.29  E-value=0.00047  Score=58.90  Aligned_cols=191  Identities=14%  Similarity=0.074  Sum_probs=124.5

Q ss_pred             CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCc-----e--EEEEe
Q 016224          127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGE-----V--GCMIS  199 (393)
Q Consensus       127 ~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-----~--~~~~~  199 (393)
                      ..+.|..||..++...+..   ....+.++++.+++.++++ +.+ .|.++|..+++..........     .  ..+.+
T Consensus        38 ~~~~I~r~d~~~g~~~~~~---~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~  112 (295)
T d2ghsa1          38 LERELHELHLASGRKTVHA---LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP  112 (295)
T ss_dssp             GGTEEEEEETTTTEEEEEE---CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT
T ss_pred             CCCEEEEEECCCCeEEEEE---CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECC
Confidence            5678999999887333222   3457889999888876665 455 588999999876554433211     1  22335


Q ss_pred             CCCEEEEEc-----CCeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccc--cC--ce
Q 016224          200 EGPWIFIGV-----TNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCF--EP--AA  267 (393)
Q Consensus       200 ~~~~l~~~~-----~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~--~~--~~  267 (393)
                      +|.+.++..     .+.-.+|.+..++...+.........+.++++   ++++-+..+.|..+++.......  +.  ..
T Consensus       113 ~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~  192 (295)
T d2ghsa1         113 SGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI  192 (295)
T ss_dssp             TSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE
T ss_pred             CCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEe
Confidence            777776642     22456666666665544444556678899887   56777788899999886432211  11  11


Q ss_pred             eecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEcC
Q 016224          268 SLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWD  323 (393)
Q Consensus       268 ~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~  323 (393)
                      ...+.......++++  +++.++.-..+.|..||. +++.+..+......+++++|-|
T Consensus       193 ~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG  249 (295)
T d2ghsa1         193 DSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIG  249 (295)
T ss_dssp             ECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEES
T ss_pred             ccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeC
Confidence            122233445566665  566666656788999995 5888888887667789999963

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.24  E-value=0.00027  Score=60.64  Aligned_cols=202  Identities=10%  Similarity=0.012  Sum_probs=122.0

Q ss_pred             eEEEEEecCCce--EEEEeCCCEEEEE-cCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEec
Q 016224          183 QCAGVINLGGEV--GCMISEGPWIFIG-VTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFN  257 (393)
Q Consensus       183 ~~~~~~~~~~~~--~~~~~~~~~l~~~-~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~  257 (393)
                      +.+..+.....+  ..+.++|+++++. .++.|..++.... ...+......+.+++++++  ++++...++.+..++..
T Consensus        19 ~v~~~~p~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~   97 (302)
T d2p4oa1          19 KIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV   97 (302)
T ss_dssp             EEEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             cEEEECCCCCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence            344444433333  2344688888777 5668888886643 4445556678999999988  77778888889888877


Q ss_pred             cCCccccCceeecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEec----------cCccceEEEEEcCCE
Q 016224          258 VTTNCFEPAASLKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLT----------EHTSVVMSLLCWDQF  325 (393)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~----------~~~~~v~~l~~~~~~  325 (393)
                      ........+... ........+.++  ++++++-+.++.+..+|...+.......          ........+.+++..
T Consensus        98 ~~~~~~~~~~~~-~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~  176 (302)
T d2p4oa1          98 KSDGTVETLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNF  176 (302)
T ss_dssp             CTTSCEEEEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTE
T ss_pred             ccccceeecccc-CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCc
Confidence            654322222111 223345666664  5567777788899999987764332221          112234677777654


Q ss_pred             -EEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          326 -LLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       326 -l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                       +++.+..+.|..++.....................+++.+++.   ++++...++.|..++...
T Consensus       177 l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~---l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         177 LYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN---LYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             EEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC---EEEECBTTCCEEEECTTC
T ss_pred             eeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCC---EEEEEcCCCcEEEECCCC
Confidence             5556678889888886544322211111111233466655443   777777788898887653

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.24  E-value=0.001  Score=57.38  Aligned_cols=208  Identities=10%  Similarity=-0.012  Sum_probs=126.2

Q ss_pred             EEeeEecC-cEEE-ecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCC----CcEEEEECCCCeEEE
Q 016224          113 LCRNWVQG-NCMY-GEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKD----ETVRVWDCASGQCAG  186 (393)
Q Consensus       113 ~c~~~~~~-~~~~-g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~d----g~v~iwd~~~~~~~~  186 (393)
                      ..+.|.++ .++. -...+.|+.|+.+.+ +....+.........|+++++|+++++...+    +.|...+........
T Consensus        43 EG~~~D~~G~Ly~~D~~~g~I~ri~p~g~-~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~  121 (319)
T d2dg1a1          43 EGLNFDRQGQLFLLDVFEGNIFKINPETK-EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD  121 (319)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTC-CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred             EeCEECCCCCEEEEECCCCEEEEEECCCC-eEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeee
Confidence            46677655 3443 447788988988776 5555555566778999999999877765432    345555655555444


Q ss_pred             EEecCCc---e--EEEEeCCCEEEEEcC-------CeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEEEEeCCCcE
Q 016224          187 VINLGGE---V--GCMISEGPWIFIGVT-------NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLFAGTQDGAI  251 (393)
Q Consensus       187 ~~~~~~~---~--~~~~~~~~~l~~~~~-------~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~dg~I  251 (393)
                      .......   .  ..+.++|.+.++...       +.+..++...+....+.......+.|+|+++   ++++-+..+.|
T Consensus       122 ~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I  201 (319)
T d2dg1a1         122 IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRL  201 (319)
T ss_dssp             EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred             eccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCce
Confidence            4432211   2  223457777666432       2455555555444433344455678999987   45666778999


Q ss_pred             EEEEeccCCccccCcee----ecCceeeEEEEEEc--CCEEEEecCCCcEEEeeCCCcceeeEecc------CccceEEE
Q 016224          252 LAWKFNVTTNCFEPAAS----LKGHSLAVVSLVVG--ANKLYSGSMDNSIRVWNLETLQCIQTLTE------HTSVVMSL  319 (393)
Q Consensus       252 ~vwd~~~~~~~~~~~~~----~~~~~~~v~~l~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~------~~~~v~~l  319 (393)
                      ..|++............    ..........++++  +++.++....+.|.+||. +++.+.++..      +...++++
T Consensus       202 ~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~  280 (319)
T d2dg1a1         202 HRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHP  280 (319)
T ss_dssp             EEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEE
T ss_pred             EEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeE
Confidence            99998754321111110    01111123345554  777777778899999996 6888887753      33356788


Q ss_pred             EEc
Q 016224          320 LCW  322 (393)
Q Consensus       320 ~~~  322 (393)
                      ++.
T Consensus       281 ~~~  283 (319)
T d2dg1a1         281 QFI  283 (319)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            886

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.01  E-value=0.0017  Score=60.85  Aligned_cols=258  Identities=15%  Similarity=0.064  Sum_probs=145.8

Q ss_pred             eeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCc----CCEEEEEecCCCCEEEEEe------CCCcEEEEECCCCeE
Q 016224          115 RNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ----KVVSGITLPSGSDKLYSGS------KDETVRVWDCASGQC  184 (393)
Q Consensus       115 ~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~----~~I~~i~~s~~~~~l~s~s------~dg~v~iwd~~~~~~  184 (393)
                      +++..+.++.++.|+.|.-.|.+++ +.+.......    ..++.--.-.+ ..++.+.      .+|.|.-+|+.+|+.
T Consensus       111 ~a~~~~~i~~~~~~g~l~alda~tG-~~~w~~~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~  188 (571)
T d2ad6a1         111 LAYGAGQIVKKQANGHLLALDAKTG-KINWEVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGEL  188 (571)
T ss_dssp             CEEETTEEEEECTTSEEEEEETTTC-CEEEEEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred             ceeeCCeEEEEeCCCcEEeeehhhh-hhhccccccccccccceeecCeEeC-CeEEEeeccccccccCcEEEEECCCCcE
Confidence            4566788899999999999999999 5554443211    11111001112 3455554      368899999999999


Q ss_pred             EEEEecCCc-----------------------------------------eEEEEeCCCEEEEEc---------------
Q 016224          185 AGVINLGGE-----------------------------------------VGCMISEGPWIFIGV---------------  208 (393)
Q Consensus       185 ~~~~~~~~~-----------------------------------------~~~~~~~~~~l~~~~---------------  208 (393)
                      +..+.....                                         ...+.....++..+.               
T Consensus       189 ~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n  268 (571)
T d2ad6a1         189 KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDN  268 (571)
T ss_dssp             EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred             EEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccc
Confidence            988753211                                         012233444444431               


Q ss_pred             --CCeEEEEECCCCcee-eecCCC----------C-cEEEEEEeCC---EEEEEeCCCcEEEEEeccCCcccc--Cc---
Q 016224          209 --TNFVKAWNTQTNTDL-SLSGPV----------G-QVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFE--PA---  266 (393)
Q Consensus       209 --~~~i~v~d~~~~~~~-~~~~~~----------~-~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~--~~---  266 (393)
                        ...+...|.++++.. ..+...          . ....+.....   .++.++.+|.++++|..+++..+.  ..   
T Consensus       269 ~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~  348 (571)
T d2ad6a1         269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAV  348 (571)
T ss_dssp             TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred             ccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcc
Confidence              246778899998876 222211          1 1222333332   577888999999999777642210  00   


Q ss_pred             ---ee-----------------------------ecCceeeEEEEEEcCCEEEEec------------------------
Q 016224          267 ---AS-----------------------------LKGHSLAVVSLVVGANKLYSGS------------------------  290 (393)
Q Consensus       267 ---~~-----------------------------~~~~~~~v~~l~~~~~~l~sg~------------------------  290 (393)
                         ..                             ..++.-...++.....+++...                        
T Consensus       349 ~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (571)
T d2ad6a1         349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT  428 (571)
T ss_dssp             CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred             cccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccc
Confidence               00                             0001101111111112222211                        


Q ss_pred             -------------CCCcEEEeeCCCcceeeEeccCccce-EEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCc
Q 016224          291 -------------MDNSIRVWNLETLQCIQTLTEHTSVV-MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEH  356 (393)
Q Consensus       291 -------------~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~  356 (393)
                                   ..|.|.-+|+.+++.+.+........ -.|...+.++++++.|+.++.+|.++++.+-....... .
T Consensus       429 ~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~-~  507 (571)
T d2ad6a1         429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG-G  507 (571)
T ss_dssp             EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC-C
T ss_pred             eeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCC-c
Confidence                         12578889999999887665322211 12344588888999999999999999998877654322 1


Q ss_pred             cEEEEEeeeCCCCCcEEEEEe
Q 016224          357 GVLALCGMPDSEGKPVLLCSC  377 (393)
Q Consensus       357 ~v~~~~~~~~~~~~~~l~s~s  377 (393)
                      ...-+.|..+  +++||++..
T Consensus       508 ~a~P~ty~~d--GkqYi~v~~  526 (571)
T d2ad6a1         508 IGSPMTYSFK--GKQYIGSMY  526 (571)
T ss_dssp             CSCCEEEEET--TEEEEEEEE
T ss_pred             eecceEEEEC--CEEEEEEEe
Confidence            2223455544  556776543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=0.0024  Score=52.99  Aligned_cols=210  Identities=10%  Similarity=0.001  Sum_probs=115.9

Q ss_pred             cEEEEECCCCeEEEEEecCCce--EEEEeCCCEEEEE-cC---CeEEEEECCCCceeeecCCCCcEEEEEEeCC---EEE
Q 016224          173 TVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIG-VT---NFVKAWNTQTNTDLSLSGPVGQVYAMAVGND---LLF  243 (393)
Q Consensus       173 ~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~-~~---~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~---~l~  243 (393)
                      .|.|.|.+.............+  -.+.++|+.|+.. ..   ..+.+.+...+....+..+........|+++   +++
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~   99 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF   99 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeE
Confidence            4666676655555555555443  3466799988864 22   2688888888888888888888999999998   444


Q ss_pred             EEeCCCcEEEEEeccCCccccCceeecCceeeEEE--EEEcCC-EEEEecCCC--cEEEeeCCCcceeeEeccCccceEE
Q 016224          244 AGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVS--LVVGAN-KLYSGSMDN--SIRVWNLETLQCIQTLTEHTSVVMS  318 (393)
Q Consensus       244 ~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~--l~~~~~-~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~  318 (393)
                      ....++...++.......  . .............  ....++ .+++...++  .|.+.++..+.. ..+..+......
T Consensus       100 ~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~  175 (269)
T d2hqsa1         100 ALSKTGSLNLYVMDLASG--Q-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQD  175 (269)
T ss_dssp             EECTTSSCEEEEEETTTC--C-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEE
T ss_pred             eeecCCccceeecccccc--c-ceeeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccc
Confidence            444555555544443321  1 1111112222222  222344 455555555  455556655433 333344555566


Q ss_pred             EEEc--CCEEEEEe-CCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeC---CCeEEEEeCCcee
Q 016224          319 LLCW--DQFLLSCS-LDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN---DNSVRFYDLPSVI  391 (393)
Q Consensus       319 l~~~--~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~---dg~I~iwd~~s~~  391 (393)
                      ..++  ++.++..+ ..+...+|...............  .......|+|++.   .|+-.+.   ...|+++++..+.
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~p~~SPDG~---~i~f~s~~~~~~~l~~~~~dg~~  249 (269)
T d2hqsa1         176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSST--FLDETPSLAPNGT---MVIYSSSQGMGSVLNLVSTDGRF  249 (269)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCS--SSCEEEEECTTSS---EEEEEEEETTEEEEEEEETTSCC
T ss_pred             cccccccceeEEEeecCCceeeeEeecccccceEeecC--ccccceEECCCCC---EEEEEEcCCCCcEEEEEECCCCC
Confidence            6666  55555544 44555555444333333333322  2356678888755   5553332   3468889887653

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.96  E-value=0.003  Score=52.69  Aligned_cols=213  Identities=10%  Similarity=0.116  Sum_probs=126.8

Q ss_pred             CcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC-EEEEEeCCCc
Q 016224          172 ETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND-LLFAGTQDGA  250 (393)
Q Consensus       172 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~~dg~  250 (393)
                      ..|.|-|+.................+.+..+.|+.-....+.++|+++.+.+........|.-..|-.+ .|+..+ +..
T Consensus        45 ~~VvIidl~n~~~~~Rrpi~AdsAIMhP~~~IiALrag~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT-~ta  123 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT-DNA  123 (327)
T ss_dssp             EEEEEEETTSTTSCEEEECCCSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEEEC-SSE
T ss_pred             ceEEEEECCCCCcceecccchhhhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEEEc-CCc
Confidence            367777776655544555555556666777777766666788888888877755555566766777444 555543 456


Q ss_pred             EEEEEeccCCccccCceeecCce----eeEEEEEEc--CCEEEEec-------CCCcEEEeeCCCcceeeEeccCccceE
Q 016224          251 ILAWKFNVTTNCFEPAASLKGHS----LAVVSLVVG--ANKLYSGS-------MDNSIRVWNLETLQCIQTLTEHTSVVM  317 (393)
Q Consensus       251 I~vwd~~~~~~~~~~~~~~~~~~----~~v~~l~~~--~~~l~sg~-------~dg~i~iwd~~~~~~~~~~~~~~~~v~  317 (393)
                      |+-|++....   .+.+.+..|.    ..|.....+  .+.++..+       -.|.+.+|..+. +.-+.+++|.+...
T Consensus       124 VYHW~~~g~s---~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~  199 (327)
T d1utca2         124 VYHWSMEGES---QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFA  199 (327)
T ss_dssp             EEEEESSSSC---CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEE
T ss_pred             eEEEcccCCC---CchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeE
Confidence            8888885432   3444444332    345555544  33332211       236789999874 45677888887777


Q ss_pred             EEEEcCC-----EEEEE---eCCCcEEEEEcCCCcc----e----EEEEeecC--CccEEEEEeeeCCCCCcEEEEEeCC
Q 016224          318 SLLCWDQ-----FLLSC---SLDKTIKVWFATDSGN----L----EVTYTHNE--EHGVLALCGMPDSEGKPVLLCSCND  379 (393)
Q Consensus       318 ~l~~~~~-----~l~s~---s~dg~i~iwd~~~~~~----~----~~~~~~~~--~~~v~~~~~~~~~~~~~~l~s~s~d  379 (393)
                      .+...++     .++-+   ...++++|.++.....    .    ..+.....  ..--.++..++...   +++.-+.-
T Consensus       200 ~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kyg---iiyviTK~  276 (327)
T d1utca2         200 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD---VVFLITKY  276 (327)
T ss_dssp             EECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTT---EEEEEETT
T ss_pred             EEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCC---EEEEEecC
Confidence            7766632     22222   2236788888865221    0    11111111  11233444444333   88888999


Q ss_pred             CeEEEEeCCceee
Q 016224          380 NSVRFYDLPSVII  392 (393)
Q Consensus       380 g~I~iwd~~s~~l  392 (393)
                      |.|++||++|+.+
T Consensus       277 G~i~lyDleTgt~  289 (327)
T d1utca2         277 GYIHLYDLETGTC  289 (327)
T ss_dssp             SEEEEEETTTCCE
T ss_pred             cEEEEEEcccccE
Confidence            9999999999865

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.80  E-value=0.0049  Score=54.05  Aligned_cols=232  Identities=9%  Similarity=0.057  Sum_probs=122.3

Q ss_pred             eEEeeEecC-cEEEecCCCeEEEEECCCCcEEEEEec-CCcCCEEEEEecCCCCEEEEEe---CCCcEEEEECCC-CeEE
Q 016224          112 ILCRNWVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLE-GHQKVVSGITLPSGSDKLYSGS---KDETVRVWDCAS-GQCA  185 (393)
Q Consensus       112 i~c~~~~~~-~~~~g~~dg~i~vwd~~~~~~~~~~l~-~h~~~I~~i~~s~~~~~l~s~s---~dg~v~iwd~~~-~~~~  185 (393)
                      +.-++++++ ..+.+...+.+..|.+........... ........++++++++.++...   ..++|..+.+.. +...
T Consensus        42 ~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~  121 (365)
T d1jofa_          42 ISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYG  121 (365)
T ss_dssp             CSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEE
T ss_pred             CCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcc
Confidence            345777766 345555667778877664323332211 1223345677888887543322   235555554321 1111


Q ss_pred             EEE-----------------ecCCce--EEEEeCCCEEEEEc--CCeEEEEECCCCcee------eecCCCCcEEEEEEe
Q 016224          186 GVI-----------------NLGGEV--GCMISEGPWIFIGV--TNFVKAWNTQTNTDL------SLSGPVGQVYAMAVG  238 (393)
Q Consensus       186 ~~~-----------------~~~~~~--~~~~~~~~~l~~~~--~~~i~v~d~~~~~~~------~~~~~~~~v~~l~~~  238 (393)
                      ..+                 +....+  ..+.++++++++..  .+.|.+|+......+      ...........+.|+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~  201 (365)
T d1jofa_         122 NVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH  201 (365)
T ss_dssp             EEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC
T ss_pred             eeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEEC
Confidence            111                 111112  33446899888874  457888876543322      122345678999999


Q ss_pred             CC---EEEEEeCCCcEEEEEeccCCcccc-Ccee--------------ecCceeeEEE--EEEcCCEEEEecC------C
Q 016224          239 ND---LLFAGTQDGAILAWKFNVTTNCFE-PAAS--------------LKGHSLAVVS--LVVGANKLYSGSM------D  292 (393)
Q Consensus       239 ~~---~l~~~~~dg~I~vwd~~~~~~~~~-~~~~--------------~~~~~~~v~~--l~~~~~~l~sg~~------d  292 (393)
                      |+   ++++...+++|.+|++........ ....              ...+......  ++.++++|+++..      .
T Consensus       202 pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~  281 (365)
T d1jofa_         202 PTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQ  281 (365)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSC
T ss_pred             CCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccc
Confidence            98   455666789999999876532100 0000              0011222333  4446777776532      2


Q ss_pred             CcEEEeeCCCcceeeEe------ccCccceEEEEEc---CCEEEEE-eCCCcEEEEEcCCC
Q 016224          293 NSIRVWNLETLQCIQTL------TEHTSVVMSLLCW---DQFLLSC-SLDKTIKVWFATDS  343 (393)
Q Consensus       293 g~i~iwd~~~~~~~~~~------~~~~~~v~~l~~~---~~~l~s~-s~dg~i~iwd~~~~  343 (393)
                      ..|..|++.....+...      ......-..++++   +++|+++ ..++.|.+|++...
T Consensus       282 ~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         282 GYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            34777776542222111      1122233556664   6777666 56789999987543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.72  E-value=0.016  Score=53.76  Aligned_cols=258  Identities=11%  Similarity=0.044  Sum_probs=144.1

Q ss_pred             eEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcC-CEEEEEecC--CCCEEEEEeC------CCcEEEEECCCCeEEE
Q 016224          116 NWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK-VVSGITLPS--GSDKLYSGSK------DETVRVWDCASGQCAG  186 (393)
Q Consensus       116 ~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~-~I~~i~~s~--~~~~l~s~s~------dg~v~iwd~~~~~~~~  186 (393)
                      ....+.++.+..++.|.-.|..++ +++.....+.. .-..+.-.|  ....++.+..      .|.|.-+|.++|+.+.
T Consensus       114 ~~~~~~v~~~~~~g~l~Alda~tG-~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W  192 (560)
T d1kv9a2         114 ALWGDKVYVGTLDGRLIALDAKTG-KAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAW  192 (560)
T ss_dssp             EEEBTEEEEECTTSEEEEEETTTC-CEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             ceeCCeEEEEeCCCEEEEEECCCC-cEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEe
Confidence            344677889999999999999999 66665543211 100111111  1234444432      3679999999999999


Q ss_pred             EEecCCc----------------------------------eEEEEeCCCEEEEEc--------------------CCeE
Q 016224          187 VINLGGE----------------------------------VGCMISEGPWIFIGV--------------------TNFV  212 (393)
Q Consensus       187 ~~~~~~~----------------------------------~~~~~~~~~~l~~~~--------------------~~~i  212 (393)
                      .+.....                                  ...+.+...+++.+.                    .+.|
T Consensus       193 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~si  272 (560)
T d1kv9a2         193 RFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSI  272 (560)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             eeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceee
Confidence            8863210                                  012223444444321                    2357


Q ss_pred             EEEECCCCcee-eec--CCC---------CcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCce-------e--
Q 016224          213 KAWNTQTNTDL-SLS--GPV---------GQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAA-------S--  268 (393)
Q Consensus       213 ~v~d~~~~~~~-~~~--~~~---------~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~-------~--  268 (393)
                      ...|+++++.. .++  .|.         .....+.....   .++.++.+|.++++|..+++.......       .  
T Consensus       273 vAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d  352 (560)
T d1kv9a2         273 LAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVD  352 (560)
T ss_dssp             EEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEEC
T ss_pred             EEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccC
Confidence            77788888876 222  121         11223333332   677888999999999877643210000       0  


Q ss_pred             -------------------------ecCceeeEEEEEEcCCEEEEec---------------------------------
Q 016224          269 -------------------------LKGHSLAVVSLVVGANKLYSGS---------------------------------  290 (393)
Q Consensus       269 -------------------------~~~~~~~v~~l~~~~~~l~sg~---------------------------------  290 (393)
                                               .-++.-.-.++....++++...                                 
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  432 (560)
T d1kv9a2         353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP  432 (560)
T ss_dssp             TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred             hhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCC
Confidence                                     0000000011111112222211                                 


Q ss_pred             ---CCCcEEEeeCCCcceeeEeccCccce-EEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeC
Q 016224          291 ---MDNSIRVWNLETLQCIQTLTEHTSVV-MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPD  366 (393)
Q Consensus       291 ---~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  366 (393)
                         ..|.|.-||+.+++.+..+....... -.++..+.++++|+.||.++.+|.++++.+-.+...... ...-+.+..+
T Consensus       433 ~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~-~~~P~ty~~d  511 (560)
T d1kv9a2         433 AAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGI-VAAPMTFELA  511 (560)
T ss_dssp             GGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEET
T ss_pred             CcccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCc-cccCEEEEEC
Confidence               13578889999999887765322211 234455889999999999999999999988776653322 1222444444


Q ss_pred             CCCCcEEEEEe
Q 016224          367 SEGKPVLLCSC  377 (393)
Q Consensus       367 ~~~~~~l~s~s  377 (393)
                        +++||+..+
T Consensus       512 --Gkqyv~v~a  520 (560)
T d1kv9a2         512 --GRQYVAIMA  520 (560)
T ss_dssp             --TEEEEEEEE
T ss_pred             --CEEEEEEEe
Confidence              456776554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.68  E-value=0.011  Score=49.54  Aligned_cols=174  Identities=10%  Similarity=0.144  Sum_probs=105.2

Q ss_pred             cCCCeEEEEECCCCcEEEEEec-CCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEE
Q 016224          126 EKCKFLHSWTVGDGFKLLTQLE-GHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMISEGPWI  204 (393)
Q Consensus       126 ~~dg~i~vwd~~~~~~~~~~l~-~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l  204 (393)
                      ..++.|.+++.. + +....+. ........+++.++++++++....+.+.+++.. ++.+..+..              
T Consensus        90 ~~~~~i~~~~~~-g-~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~--------------  152 (279)
T d1q7fa_          90 SPTHQIQIYNQY-G-QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGC--------------  152 (279)
T ss_dssp             GGGCEEEEECTT-S-CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC--------------
T ss_pred             CCcccccccccc-c-cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccc--------------
Confidence            344567777654 4 3444443 345667888888888877776666667777643 343333311              


Q ss_pred             EEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCCcEEEEEeccCCccccCceee--cCceeeEEEEE
Q 016224          205 FIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDGAILAWKFNVTTNCFEPAASL--KGHSLAVVSLV  280 (393)
Q Consensus       205 ~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~~~~~~~~~~~--~~~~~~v~~l~  280 (393)
                                           ..+......+++.++  ++++....+.|++||....     .+..+  .+.......|+
T Consensus       153 ---------------------~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~-----~~~~~g~~g~~~~P~gia  206 (279)
T d1q7fa_         153 ---------------------SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-----YLRQIGGEGITNYPIGVG  206 (279)
T ss_dssp             ---------------------TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-----EEEEESCTTTSCSEEEEE
T ss_pred             ---------------------cccccccceeeeccceeEEeeeccccceeeeecCCc-----eeeeecccccccCCcccc
Confidence                                 223445566777665  6666667778888876542     12222  12333345666


Q ss_pred             Ec--CCEEEEec-CCCcEEEeeCCCcceeeEeccC--ccceEEEEEc-CCEEEEEeCCCcEEEEEcCCC
Q 016224          281 VG--ANKLYSGS-MDNSIRVWNLETLQCIQTLTEH--TSVVMSLLCW-DQFLLSCSLDKTIKVWFATDS  343 (393)
Q Consensus       281 ~~--~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~--~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~  343 (393)
                      ++  ++.+++-. .++.|.+|+. +++.+.++...  ......|++. ...|++++.+..|++|.....
T Consensus       207 vD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         207 INSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             ECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred             cccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEeeee
Confidence            64  66665544 3557999994 58877777532  2345677776 335666778899999987654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.54  E-value=0.022  Score=52.98  Aligned_cols=188  Identities=12%  Similarity=0.093  Sum_probs=108.1

Q ss_pred             ecCcEEEecC-CCeEEEEECC-CCcEEEEEecCCcC----CE-------EEEEecCCCCEEEEEeCCCcEEEEECCCCeE
Q 016224          118 VQGNCMYGEK-CKFLHSWTVG-DGFKLLTQLEGHQK----VV-------SGITLPSGSDKLYSGSKDETVRVWDCASGQC  184 (393)
Q Consensus       118 ~~~~~~~g~~-dg~i~vwd~~-~~~~~~~~l~~h~~----~I-------~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~  184 (393)
                      ..+.+++++. ++.|...|.. +| +.+-+++....    .+       ..+++.  +..|+.++.||.|.-.|.++|+.
T Consensus        61 ~~g~vyv~t~~~~~v~Alda~~tG-~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~  137 (571)
T d2ad6a1          61 IGDMMYVHSAFPNNTYALNLNDPG-KIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKI  137 (571)
T ss_dssp             ETTEEEEECSTTTCEEEEETTCTT-SEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCE
T ss_pred             ECCEEEEecCCCCeEEEEeCCCCC-ceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhh
Confidence            3455666664 6889999974 68 66665542100    00       123333  35788889999999999999998


Q ss_pred             EEEEecCCc-------eEEEEeCCCEEEEE------cCCeEEEEECCCCcee-eecCC----------------------
Q 016224          185 AGVINLGGE-------VGCMISEGPWIFIG------VTNFVKAWNTQTNTDL-SLSGP----------------------  228 (393)
Q Consensus       185 ~~~~~~~~~-------~~~~~~~~~~l~~~------~~~~i~v~d~~~~~~~-~~~~~----------------------  228 (393)
                      +........       ...+..++.+++..      ..+.|.-+|..+++.+ .....                      
T Consensus       138 ~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~  217 (571)
T d2ad6a1         138 NWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             EEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             hccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            887764321       11123345554443      2568999999999977 22211                      


Q ss_pred             ---------------CCcE-EEEEEeCC--EEEEEeC----------------CCcEEEEEeccCCccccCcee------
Q 016224          229 ---------------VGQV-YAMAVGND--LLFAGTQ----------------DGAILAWKFNVTTNCFEPAAS------  268 (393)
Q Consensus       229 ---------------~~~v-~~l~~~~~--~l~~~~~----------------dg~I~vwd~~~~~~~~~~~~~------  268 (393)
                                     ...+ ...+++++  +++.+..                ...+...|.++++..+.....      
T Consensus       218 ~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd  297 (571)
T d2ad6a1         218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD  297 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             cccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccc
Confidence                           0111 12344444  4444433                245666777766432211100      


Q ss_pred             ec-CceeeEEEEEEcCC---EEEEecCCCcEEEeeCCCcceeeE
Q 016224          269 LK-GHSLAVVSLVVGAN---KLYSGSMDNSIRVWNLETLQCIQT  308 (393)
Q Consensus       269 ~~-~~~~~v~~l~~~~~---~l~sg~~dg~i~iwd~~~~~~~~~  308 (393)
                      +. .+......+..+++   .++.++.+|.+.++|.++++++..
T Consensus       298 ~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~  341 (571)
T d2ad6a1         298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cccccccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence            00 11222334445554   477888999999999999988743

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.54  E-value=0.017  Score=48.06  Aligned_cols=242  Identities=9%  Similarity=0.108  Sum_probs=152.1

Q ss_pred             CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEecCCceEEEE-eCCCEEEE
Q 016224          128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVINLGGEVGCMI-SEGPWIFI  206 (393)
Q Consensus       128 dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~l~~  206 (393)
                      ...|.|.|+.+..+..+.-..-.++|    .+|..+.||-=+ ..++.++|+++.+.++.+...+.+..+- -+.+.|+.
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi~AdsAI----MhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~l  118 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPISADSAI----MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVAL  118 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEECCCSEEE----ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEE
T ss_pred             CceEEEEECCCCCcceecccchhhhh----cCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEE
Confidence            35788888876544444433334333    578888887765 4589999999999999999999887665 47778888


Q ss_pred             EcCCeEEEEECCCCce-e-eecCC----CCcEEEEEEeCC---EEEEE--eC----CCcEEEEEeccCCccccCceeecC
Q 016224          207 GVTNFVKAWNTQTNTD-L-SLSGP----VGQVYAMAVGND---LLFAG--TQ----DGAILAWKFNVTTNCFEPAASLKG  271 (393)
Q Consensus       207 ~~~~~i~v~d~~~~~~-~-~~~~~----~~~v~~l~~~~~---~l~~~--~~----dg~I~vwd~~~~~~~~~~~~~~~~  271 (393)
                      -.+..|+-|+++.... . .+..|    ..+|.....+++   .+++|  ..    .|.+.+|..+..     ..+.+++
T Consensus       119 VT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-----~sQ~ieG  193 (327)
T d1utca2         119 VTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPIEG  193 (327)
T ss_dssp             ECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-----EEEEECC
T ss_pred             EcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-----cCccccc
Confidence            8899999999965332 2 22222    356777777776   33332  22    356778877653     3466788


Q ss_pred             ceeeEEEEEEcCC-----EEEE---ecCCCcEEEeeCCCcc---e-----eeEec----cCccceEEEEEcC--CEEEEE
Q 016224          272 HSLAVVSLVVGAN-----KLYS---GSMDNSIRVWNLETLQ---C-----IQTLT----EHTSVVMSLLCWD--QFLLSC  329 (393)
Q Consensus       272 ~~~~v~~l~~~~~-----~l~s---g~~dg~i~iwd~~~~~---~-----~~~~~----~~~~~v~~l~~~~--~~l~s~  329 (393)
                      |...-..+..+++     .|+.   +...+++.|.++....   .     ...+.    ...+--.++..+.  ..+..-
T Consensus       194 haa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyvi  273 (327)
T d1utca2         194 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  273 (327)
T ss_dssp             SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred             eeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEE
Confidence            8777777766543     2222   2234688888885421   1     11111    1123335666664  478888


Q ss_pred             eCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEE
Q 016224          330 SLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRF  384 (393)
Q Consensus       330 s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~i  384 (393)
                      +.-|.|.+||+.++..+..-.-....  +..-+.... .+  =+++-..+|.|..
T Consensus       274 TK~G~i~lyDleTgt~i~~nRIs~~~--iF~~a~~~~-~~--Gi~~VNr~GqVl~  323 (327)
T d1utca2         274 TKYGYIHLYDLETGTCIYMNRISGET--IFVTAPHEA-TA--GIIGVNRKGQVLS  323 (327)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSC--EEEEEEETT-TT--EEEEEETTSEEEE
T ss_pred             ecCcEEEEEEcccccEEEEeecCCCc--eEEeccCCC-Cc--eEEEECCCCeEEE
Confidence            89999999999998876654443333  443322222 12  2555557777654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.53  E-value=0.0073  Score=49.98  Aligned_cols=79  Identities=11%  Similarity=0.194  Sum_probs=52.8

Q ss_pred             CCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeC-C-----CcEEEEECCCCeEEEEEecC---------
Q 016224          127 KCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSK-D-----ETVRVWDCASGQCAGVINLG---------  191 (393)
Q Consensus       127 ~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~-d-----g~v~iwd~~~~~~~~~~~~~---------  191 (393)
                      .++.|.+.|+.++ +. +.|..+...+...+|||||+.||-... +     ..|.+++..+++........         
T Consensus        19 ~~~dl~~~d~~~g-~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~   96 (281)
T d1k32a2          19 CCDDLWEHDLKSG-ST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMF   96 (281)
T ss_dssp             ETTEEEEEETTTC-CE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEEC
T ss_pred             eCCcEEEEECCCC-CE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCcccc
Confidence            3457888899887 43 456778888999999999999986542 2     24778888888765543222         


Q ss_pred             CceEEEEeCCCEEEEE
Q 016224          192 GEVGCMISEGPWIFIG  207 (393)
Q Consensus       192 ~~~~~~~~~~~~l~~~  207 (393)
                      .....+.++++.++..
T Consensus        97 ~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          97 TDVAGFDPDGNLIIST  112 (281)
T ss_dssp             SEEEEECTTCCEEEEE
T ss_pred             ccccccCCCCCEEEEE
Confidence            1123344677777654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.50  E-value=0.036  Score=51.74  Aligned_cols=81  Identities=12%  Similarity=-0.021  Sum_probs=53.2

Q ss_pred             CcEEEeeCCCcceeeEeccCccce-EEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCc
Q 016224          293 NSIRVWNLETLQCIQTLTEHTSVV-MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP  371 (393)
Q Consensus       293 g~i~iwd~~~~~~~~~~~~~~~~v-~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  371 (393)
                      |.|.-||+.+++.+.......... -.+.-.+.+++.|+.||.++.+|.++++.+-.+..... ....-+.|..+  +++
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~-~~a~P~tY~~d--GkQ  529 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG-AIGYPMTYTHK--GTQ  529 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC-CCSCCEEEEET--TEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCC-cccCCeEEEEC--CEE
Confidence            578899999998876654222111 12233478888999999999999999998877664322 22223455544  556


Q ss_pred             EEEEE
Q 016224          372 VLLCS  376 (393)
Q Consensus       372 ~l~s~  376 (393)
                      ||+..
T Consensus       530 Yvav~  534 (596)
T d1w6sa_         530 YVAIY  534 (596)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.47  E-value=0.028  Score=52.26  Aligned_cols=82  Identities=11%  Similarity=0.086  Sum_probs=55.0

Q ss_pred             CcEEEeeCCCcceeeEeccCccce-EEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCc
Q 016224          293 NSIRVWNLETLQCIQTLTEHTSVV-MSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKP  371 (393)
Q Consensus       293 g~i~iwd~~~~~~~~~~~~~~~~v-~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  371 (393)
                      |.|.-||+.+++.+.+++...... -.+...+.++++|+.|+.++.+|.++++.+-.+...... .-.-+.|..+  +++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~-~~~P~ty~~~--GkQ  533 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGV-VAAPSTYMVD--GRQ  533 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEET--TEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCc-cccCEEEEEC--CEE
Confidence            468889999999887776432211 235556889999999999999999999998776653321 1112444444  455


Q ss_pred             EEEEEe
Q 016224          372 VLLCSC  377 (393)
Q Consensus       372 ~l~s~s  377 (393)
                      ||+..+
T Consensus       534 Yv~v~~  539 (573)
T d1kb0a2         534 YVSVAV  539 (573)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            665544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.32  E-value=0.038  Score=47.04  Aligned_cols=213  Identities=8%  Similarity=-0.014  Sum_probs=120.1

Q ss_pred             CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cCCceEE--EEeCCCEEEEEc-----CCeEEEEECCCC
Q 016224          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGVIN-LGGEVGC--MISEGPWIFIGV-----TNFVKAWNTQTN  220 (393)
Q Consensus       149 h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~~~~--~~~~~~~l~~~~-----~~~i~v~d~~~~  220 (393)
                      ....+..++|.++|++.++-...+.|..|+.++++....+. .......  +.++++++++..     .+.+...+....
T Consensus        38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            34455688999999877777778899999988776554443 3333333  335788777753     224555666655


Q ss_pred             ceeeecC---CCCcEEEEEEeCC-EEEEEeCC-------CcEEEEEeccCCccccCceeecCceeeEEEEEEc--CCEE-
Q 016224          221 TDLSLSG---PVGQVYAMAVGND-LLFAGTQD-------GAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--ANKL-  286 (393)
Q Consensus       221 ~~~~~~~---~~~~v~~l~~~~~-~l~~~~~d-------g~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l-  286 (393)
                      .......   .......+.+.++ .|+.+...       +.+..++....     ....+...-.....++++  ++.| 
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-----~~~~~~~~~~~pnGia~s~dg~~ly  192 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-----TVTPIIQNISVANGIALSTDEKVLW  192 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-----CEEEEEEEESSEEEEEECTTSSEEE
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-----eeEEEeeccceeeeeeeccccceEE
Confidence            5443222   2345778888887 44443322       22333332221     112221122233556775  5544 


Q ss_pred             EEecCCCcEEEeeCCC-cceeeEe-------ccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeec---
Q 016224          287 YSGSMDNSIRVWNLET-LQCIQTL-------TEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHN---  353 (393)
Q Consensus       287 ~sg~~dg~i~iwd~~~-~~~~~~~-------~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---  353 (393)
                      ++-+..+.|..||+.. +......       ......--.++++  |++.++....+.|.+||. +++.+..+....   
T Consensus       193 vad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~  271 (319)
T d2dg1a1         193 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDE  271 (319)
T ss_dssp             EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGG
T ss_pred             EecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCC
Confidence            5556788999998763 2221111       1111223457776  777777788999999996 566666554322   


Q ss_pred             -CCccEEEEEeeeCC
Q 016224          354 -EEHGVLALCGMPDS  367 (393)
Q Consensus       354 -~~~~v~~~~~~~~~  367 (393)
                       ....+.+++|.+..
T Consensus       272 ~~~~~~~~~~~~~~~  286 (319)
T d2dg1a1         272 GHMLRSTHPQFIPGT  286 (319)
T ss_dssp             TCSCBCCEEEECTTS
T ss_pred             CcCceeeeEEEeCCC
Confidence             12245677776643

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.016  Score=52.45  Aligned_cols=219  Identities=11%  Similarity=0.062  Sum_probs=121.1

Q ss_pred             EecC-cEEEecCCCeEEEEECCCCcEEEEEecC---CcCCEEEEEecCCCCEEEEEe---------CCCcEEEEECCCCe
Q 016224          117 WVQG-NCMYGEKCKFLHSWTVGDGFKLLTQLEG---HQKVVSGITLPSGSDKLYSGS---------KDETVRVWDCASGQ  183 (393)
Q Consensus       117 ~~~~-~~~~g~~dg~i~vwd~~~~~~~~~~l~~---h~~~I~~i~~s~~~~~l~s~s---------~dg~v~iwd~~~~~  183 (393)
                      |.++ ..+.-..+|.|.+||+.++.+ ...+..   ..-.+....||||+++|+...         ..+.+.++|+.+++
T Consensus        24 W~~~~~~~~~~~~g~i~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~  102 (465)
T d1xfda1          24 WISDTEFIYREQKGTVRLWNVETNTS-TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (465)
T ss_dssp             BSSSSCBCCCCSSSCEEEBCGGGCCC-EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             EeCCCcEEEEeCCCcEEEEECCCCCE-EEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence            4444 233345677899999987732 222332   234677788999999988764         35788999999887


Q ss_pred             EEEEEecC--C-c--eEEEEeCCCEEEEEcCCeEEEEECCCCceeee--cCCCCcE-----------------EEEEEeC
Q 016224          184 CAGVINLG--G-E--VGCMISEGPWIFIGVTNFVKAWNTQTNTDLSL--SGPVGQV-----------------YAMAVGN  239 (393)
Q Consensus       184 ~~~~~~~~--~-~--~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~~~--~~~~~~v-----------------~~l~~~~  239 (393)
                      ........  . .  ...+.++|+.++-..++.|.+.+..++....+  .+....|                 .++.|+|
T Consensus       103 ~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP  182 (465)
T d1xfda1         103 PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP  182 (465)
T ss_dssp             CEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred             eeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC
Confidence            54433221  1 1  23456899999888889999998887765532  2222222                 4677899


Q ss_pred             C--EEEEEe-CCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecC--CCcEEEeeCCCcceeeEe-----
Q 016224          240 D--LLFAGT-QDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSM--DNSIRVWNLETLQCIQTL-----  309 (393)
Q Consensus       240 ~--~l~~~~-~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~-----  309 (393)
                      |  .||... .+..|..+.+......         ....+..+.+-    .+|..  ...+.++|+.++......     
T Consensus       183 Dgk~iaf~~~D~s~V~~~~~~~~~~~---------~~p~~~~~~Yp----~~G~~np~~~l~v~d~~~~~~~~~~~~~~~  249 (465)
T d1xfda1         183 DGTRLAYAAINDSRVPIMELPTYTGS---------IYPTVKPYHYP----KAGSENPSISLHVIGLNGPTHDLEMMPPDD  249 (465)
T ss_dssp             TSSEEEEEEEECTTSCEEEECCCSSS---------SSCCCEEEECC----BTTSCCCEEEEEEEESSSSCCCEECCCCCC
T ss_pred             CCCeEEEEEecccccceeeccccccc---------ccceeeeeecc----ccCCCCCceeEEEEecCCCcEEEEEeccCc
Confidence            8  555443 4455555554332110         00111111110    00111  124677777665432221     


Q ss_pred             -ccCccceEEEEEc--CCEEEE-EeCC---CcEEEEEcCCCcceEEE
Q 016224          310 -TEHTSVVMSLLCW--DQFLLS-CSLD---KTIKVWFATDSGNLEVT  349 (393)
Q Consensus       310 -~~~~~~v~~l~~~--~~~l~s-~s~d---g~i~iwd~~~~~~~~~~  349 (393)
                       ......+..+.|.  +++++. ...+   ..|.++|..+++.....
T Consensus       250 ~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~  296 (465)
T d1xfda1         250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH  296 (465)
T ss_dssp             GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred             CccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEE
Confidence             1223346777887  233333 2222   24778888777654443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.29  E-value=0.038  Score=51.18  Aligned_cols=189  Identities=19%  Similarity=0.232  Sum_probs=109.1

Q ss_pred             ecCcEEEecCCCeEEEEECCCCcEEEEEecCCcC----------CE-EEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224          118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQK----------VV-SGITLPSGSDKLYSGSKDETVRVWDCASGQCAG  186 (393)
Q Consensus       118 ~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~----------~I-~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  186 (393)
                      ..+.+++++.++.|.-.|..+| +.+-++.....          .+ ..++.  .+..++.+..|+.|.-.|..+|+.+.
T Consensus        65 ~~g~vyv~t~~~~v~AlDa~tG-~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w  141 (560)
T d1kv9a2          65 HDGVIYTSMSWSRVIAVDAASG-KELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIW  141 (560)
T ss_dssp             ETTEEEEEEGGGEEEEEETTTC-CEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ECCEEEEECCCCeEEEEeCCCC-CEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEe
Confidence            4566777889999999999999 66666532210          00 11111  24578889999999999999999998


Q ss_pred             EEecCCce-------EEEEeCCCEEEEE------cCCeEEEEECCCCcee-eecCC------------------------
Q 016224          187 VINLGGEV-------GCMISEGPWIFIG------VTNFVKAWNTQTNTDL-SLSGP------------------------  228 (393)
Q Consensus       187 ~~~~~~~~-------~~~~~~~~~l~~~------~~~~i~v~d~~~~~~~-~~~~~------------------------  228 (393)
                      .+......       .....++.+++..      ..+.|.-+|.++++.+ .+...                        
T Consensus       142 ~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~  221 (560)
T d1kv9a2         142 SQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ  221 (560)
T ss_dssp             EEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred             ccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccc
Confidence            87653221       1122344444432      2357999999999977 32210                        


Q ss_pred             ------CCcEE-EEEEeCC--EEEEEeC-------------------CCcEEEEEeccCCccccCcee------e-cCce
Q 016224          229 ------VGQVY-AMAVGND--LLFAGTQ-------------------DGAILAWKFNVTTNCFEPAAS------L-KGHS  273 (393)
Q Consensus       229 ------~~~v~-~l~~~~~--~l~~~~~-------------------dg~I~vwd~~~~~~~~~~~~~------~-~~~~  273 (393)
                            ...+. .+++++.  +++.+..                   ...|...|+++++..+.....      + ..+.
T Consensus       222 ~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~  301 (560)
T d1kv9a2         222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ  301 (560)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             cccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccce
Confidence                  00111 1344444  3333221                   234555566655322110000      0 0112


Q ss_pred             eeEEEEEEcCC---EEEEecCCCcEEEeeCCCcceeeEe
Q 016224          274 LAVVSLVVGAN---KLYSGSMDNSIRVWNLETLQCIQTL  309 (393)
Q Consensus       274 ~~v~~l~~~~~---~l~sg~~dg~i~iwd~~~~~~~~~~  309 (393)
                      .....+..+++   .++.+..+|.+.++|..+++++...
T Consensus       302 ~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~  340 (560)
T d1kv9a2         302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE  340 (560)
T ss_dssp             EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             eeeeeeecCCceeeeeeecCccceEEEEecCCCcccccc
Confidence            23344555554   5778999999999999999987544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.02  E-value=0.054  Score=44.37  Aligned_cols=82  Identities=13%  Similarity=0.073  Sum_probs=54.0

Q ss_pred             ecCC--CCEEEEEeCCCcEEEEECCCCeEEEEEecCCce--EEEEeCCCEEEEE--cCC-----eEEEEECCCCceeeec
Q 016224          158 LPSG--SDKLYSGSKDETVRVWDCASGQCAGVINLGGEV--GCMISEGPWIFIG--VTN-----FVKAWNTQTNTDLSLS  226 (393)
Q Consensus       158 ~s~~--~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~--~~~-----~i~v~d~~~~~~~~~~  226 (393)
                      .+|+  |+.++-.+. +.|.+.|+.+++..+........  ..+.++|+.|+..  .++     .|.+++..+++...+.
T Consensus         6 ~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt   84 (281)
T d1k32a2           6 LNPDIHGDRIIFVCC-DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT   84 (281)
T ss_dssp             EEEEEETTEEEEEET-TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC
T ss_pred             cCCCCCCCEEEEEeC-CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEee
Confidence            5788  888887654 57888899988876554444433  3455789887753  221     4888888888876554


Q ss_pred             CCC-------CcEEEEEEeCC
Q 016224          227 GPV-------GQVYAMAVGND  240 (393)
Q Consensus       227 ~~~-------~~v~~l~~~~~  240 (393)
                      ...       .......|+|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~spd  105 (281)
T d1k32a2          85 YFSGKSTGRRMFTDVAGFDPD  105 (281)
T ss_dssp             CCCEEEETTEECSEEEEECTT
T ss_pred             ecCCCccCccccccccccCCC
Confidence            332       23456677776

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.97  E-value=0.14  Score=47.43  Aligned_cols=104  Identities=13%  Similarity=0.184  Sum_probs=65.7

Q ss_pred             cCcEEEe-cCCCeEEEEEC-CCCcEEEEEecCCcC----------C-EEEEEecCC----CCEEEEEeCCCcEEEEECCC
Q 016224          119 QGNCMYG-EKCKFLHSWTV-GDGFKLLTQLEGHQK----------V-VSGITLPSG----SDKLYSGSKDETVRVWDCAS  181 (393)
Q Consensus       119 ~~~~~~g-~~dg~i~vwd~-~~~~~~~~~l~~h~~----------~-I~~i~~s~~----~~~l~s~s~dg~v~iwd~~~  181 (393)
                      .+.+++. +..+.+...|. +++ +.+-++.....          . -+.+++.++    ..+|+.++.|+.|.-.|.++
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG-~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~t  140 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPG-TILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET  140 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTT-SEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCC-CEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeecccc
Confidence            4455544 44677888886 578 66666532110          1 123455332    34788999999999999999


Q ss_pred             CeEEEEEecCCc-------eEEEEeCCCEEEEE------cCCeEEEEECCCCcee
Q 016224          182 GQCAGVINLGGE-------VGCMISEGPWIFIG------VTNFVKAWNTQTNTDL  223 (393)
Q Consensus       182 ~~~~~~~~~~~~-------~~~~~~~~~~l~~~------~~~~i~v~d~~~~~~~  223 (393)
                      |+.+..+.....       ......++.+++..      ..+.|+-+|..+++.+
T Consensus       141 G~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~  195 (596)
T d1w6sa_         141 GETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQV  195 (596)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred             CceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEE
Confidence            999988864321       11123344444432      2478999999999987

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.90  E-value=0.16  Score=46.92  Aligned_cols=95  Identities=18%  Similarity=0.120  Sum_probs=64.9

Q ss_pred             CCcEEEeeCCCcceeeEeccCccceE-EEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCC
Q 016224          292 DNSIRVWNLETLQCIQTLTEHTSVVM-SLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGK  370 (393)
Q Consensus       292 dg~i~iwd~~~~~~~~~~~~~~~~v~-~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  370 (393)
                      .|.|.-+|+.+++.+.+...+..... .++..+.++++|+.||.++.+|.++++.+-.+...... .-.-+.|..+  ++
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~-~~~P~ty~~~--G~  541 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGI-VSPPITWEQD--GE  541 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEET--TE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCc-cccCEEEEEC--CE
Confidence            36788899999998887764432221 24455888889999999999999999998777653322 2222555544  55


Q ss_pred             cEEEEEeC---------------------CCeEEEEeCCc
Q 016224          371 PVLLCSCN---------------------DNSVRFYDLPS  389 (393)
Q Consensus       371 ~~l~s~s~---------------------dg~I~iwd~~s  389 (393)
                      +||+..+.                     .+.|.+|.|++
T Consensus       542 qYv~i~ag~g~~~~~~~g~~~~~~~~~~~g~~l~vF~Lp~  581 (582)
T d1flga_         542 QYLGVTVGYGGAVPLWGGDMADLTRPVAQGGSFWVFKLPS  581 (582)
T ss_dssp             EEEEEEECCCSHHHHHCTHHHHHHTTCCCCCEEEEEECCC
T ss_pred             EEEEEEeCCCCccccccccccccccccCCCCEEEEEeCCC
Confidence            67665432                     35788888775

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.82  E-value=0.11  Score=43.54  Aligned_cols=213  Identities=12%  Similarity=0.043  Sum_probs=120.8

Q ss_pred             EEEecCCCCEE-EEEeCCCcEEEEECCCCeEEEEEecCCceEEEE--eCCCEEEEEcCCeEEEEECCCCceeeecC----
Q 016224          155 GITLPSGSDKL-YSGSKDETVRVWDCASGQCAGVINLGGEVGCMI--SEGPWIFIGVTNFVKAWNTQTNTDLSLSG----  227 (393)
Q Consensus       155 ~i~~s~~~~~l-~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~v~d~~~~~~~~~~~----  227 (393)
                      +..|++....| .+=-..+.|..||..+++. ..+..+..+.++.  .++.++++. ...+..+|..+++...+..    
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg~l~va~-~~gl~~~d~~tg~~~~l~~~~~~   99 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAELESD   99 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSTT
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeE-EEEECCCCcEEEEEecCCCEEEEE-eCccEEeecccceeeEEeeeecC
Confidence            34466644434 3433567888899888764 3555555555444  566666655 4579999999988654322    


Q ss_pred             -CCCcEEEEEEeCC-EEEEEeC-----CCcEEEEEeccCCccccCceeecCceeeEEEEEEc--CC-EEEEecCCCcEEE
Q 016224          228 -PVGQVYAMAVGND-LLFAGTQ-----DGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVG--AN-KLYSGSMDNSIRV  297 (393)
Q Consensus       228 -~~~~v~~l~~~~~-~l~~~~~-----dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~-~l~sg~~dg~i~i  297 (393)
                       ....++.+.+.++ .|..++.     .+.-.+|.+..+.    ..... ..-.....+.++  ++ ++++-+..+.|..
T Consensus       100 ~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~----~~~~~-~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~  174 (295)
T d2ghsa1         100 LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK----VTKLF-ADISIPNSICFSPDGTTGYFVDTKVNRLMR  174 (295)
T ss_dssp             CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE----EEEEE-EEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             CCcccceeeEECCCCCEEEEeccccccccceeEeeecCCc----EEEEe-eccCCcceeeecCCCceEEEeecccceeeE
Confidence             2235788888887 3333332     2334556655442    11111 111223445554  44 4566677888998


Q ss_pred             eeCCC--c----ce--eeEeccCccceEEEEEc--CCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCC
Q 016224          298 WNLET--L----QC--IQTLTEHTSVVMSLLCW--DQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDS  367 (393)
Q Consensus       298 wd~~~--~----~~--~~~~~~~~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  367 (393)
                      +++..  +    +.  ...+.........++++  |++.++.-..+.|..||. +++.+..+.....  .+++++|--..
T Consensus       175 ~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~--~~T~~~FGG~d  251 (295)
T d2ghsa1         175 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK--QTTCPAFIGPD  251 (295)
T ss_dssp             EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS--BEEEEEEESTT
T ss_pred             eeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCC--ceEEEEEeCCC
Confidence            88642  1    11  12223334456677776  566666667788999996 5666655544322  47888886321


Q ss_pred             CCCcEEEEEeC
Q 016224          368 EGKPVLLCSCN  378 (393)
Q Consensus       368 ~~~~~l~s~s~  378 (393)
                       .+.+++|...
T Consensus       252 -~~~LyvTta~  261 (295)
T d2ghsa1         252 -ASRLLVTSAR  261 (295)
T ss_dssp             -SCEEEEEEBC
T ss_pred             -CCEEEEEECC
Confidence             2235555544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.77  E-value=0.21  Score=46.12  Aligned_cols=103  Identities=20%  Similarity=0.251  Sum_probs=67.6

Q ss_pred             ecCcEEEecCCCeEEEEECCCCcEEEEEecCCc----------CCE-EEEEecCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 016224          118 VQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ----------KVV-SGITLPSGSDKLYSGSKDETVRVWDCASGQCAG  186 (393)
Q Consensus       118 ~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~----------~~I-~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  186 (393)
                      ..+.+++++.++.|.-+|.++| +.+-++....          ..+ ..+.+.  ...++.++.|+.+.-.|..+|+.+.
T Consensus        76 ~~g~vyv~t~~~~v~AlDa~TG-~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W  152 (573)
T d1kb0a2          76 VDGIMYVSASWSVVHAIDTRTG-NRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVW  152 (573)
T ss_dssp             ETTEEEEECGGGCEEEEETTTT-EEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ECCEEEEECCCCeEEEEeCCCC-CeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeecccccccee
Confidence            4566778888999999999999 7777664221          011 112222  3467788899999999999999987


Q ss_pred             EEecCCce--------EEEEeCCCEEEEE------cCCeEEEEECCCCcee
Q 016224          187 VINLGGEV--------GCMISEGPWIFIG------VTNFVKAWNTQTNTDL  223 (393)
Q Consensus       187 ~~~~~~~~--------~~~~~~~~~l~~~------~~~~i~v~d~~~~~~~  223 (393)
                      ........        ..+...+.+++.+      ..+.|..+|..+++.+
T Consensus       153 ~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~  203 (573)
T d1kb0a2         153 HQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERK  203 (573)
T ss_dssp             EEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             cccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccce
Confidence            76542111        1122344444432      2357999999999876

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.63  E-value=0.061  Score=46.62  Aligned_cols=94  Identities=17%  Similarity=0.267  Sum_probs=59.8

Q ss_pred             eEEEEECCCC-cEEEEEe-cCCcCCEEEEEecCCCCEEEEEeCC-CcEEEEECCCCeEEEEEecCC----ceEEEEeCCC
Q 016224          130 FLHSWTVGDG-FKLLTQL-EGHQKVVSGITLPSGSDKLYSGSKD-ETVRVWDCASGQCAGVINLGG----EVGCMISEGP  202 (393)
Q Consensus       130 ~i~vwd~~~~-~~~~~~l-~~h~~~I~~i~~s~~~~~l~s~s~d-g~v~iwd~~~~~~~~~~~~~~----~~~~~~~~~~  202 (393)
                      .+.+||..++ +..+..+ ..|.......++.+++.+++.|+.+ ..+.+||..+..-...-....    .......+++
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~  132 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR  132 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCc
Confidence            3678998876 1222222 2333333456788999999988765 589999998876544322221    2344456888


Q ss_pred             EEEEEcC-------CeEEEEECCCCcee
Q 016224          203 WIFIGVT-------NFVKAWNTQTNTDL  223 (393)
Q Consensus       203 ~l~~~~~-------~~i~v~d~~~~~~~  223 (393)
                      +++.+..       +.+.+||..+++-.
T Consensus       133 v~v~GG~~~~~~~~~~v~~yd~~~~~W~  160 (387)
T d1k3ia3         133 VFTIGGSWSGGVFEKNGEVYSPSSKTWT  160 (387)
T ss_dssp             EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             eeeeccccccccccceeeeecCCCCcee
Confidence            8887631       36899999887644

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.16  Score=41.74  Aligned_cols=183  Identities=11%  Similarity=0.035  Sum_probs=98.0

Q ss_pred             EEEEEcCCeEEEEECCCCceeeecCCCCcEEEEEEeCC--EEE-EEeCCCcEEEEEeccCCccccCceeecCceeeEEEE
Q 016224          203 WIFIGVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVGND--LLF-AGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSL  279 (393)
Q Consensus       203 ~l~~~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~-~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l  279 (393)
                      +|+.+....|+..++.+.....+......+.++.|+..  .|+ +-...+.|...++...................+..+
T Consensus         3 fLl~s~~~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~gl   82 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL   82 (266)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred             EEEEECCCeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceE
Confidence            45556566788788877666655556667888998764  444 444566677666654321111111122222233345


Q ss_pred             EEc--CC-EEEEecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEEEEe--CCCcEEEEEcCCCcceEEEEee
Q 016224          280 VVG--AN-KLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLLSCS--LDKTIKVWFATDSGNLEVTYTH  352 (393)
Q Consensus       280 ~~~--~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~  352 (393)
                      +++  ++ ..++-...+.|.+.++........+.........++.+  ..+|.-..  ..+.|.-.++.. .....+...
T Consensus        83 AvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG-s~~~~l~~~  161 (266)
T d1ijqa1          83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTE  161 (266)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECS
T ss_pred             EEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCC-Cceeccccc
Confidence            553  44 44555667889999998665555455455566777776  33444332  334566666543 333333322


Q ss_pred             cCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCc
Q 016224          353 NEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPS  389 (393)
Q Consensus       353 ~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s  389 (393)
                       .-.....++..+.  ++++..+-...+.|...++..
T Consensus       162 -~~~~p~gl~iD~~--~~~lYw~d~~~~~I~~~~~dG  195 (266)
T d1ijqa1         162 -NIQWPNGITLDLL--SGRLYWVDSKLHSISSIDVNG  195 (266)
T ss_dssp             -SCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTS
T ss_pred             -ccceeeEEEeecc--ccEEEEecCCcCEEEEEECCC
Confidence             1223456666543  333444445567777777643

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.39  E-value=0.19  Score=41.16  Aligned_cols=181  Identities=9%  Similarity=-0.008  Sum_probs=96.0

Q ss_pred             CEEEEEcCCeEEEEECCCCcee------eecCCCCcEEEEEEeCC---EEEEEeCCCcEEEEEeccCCccccCceeecCc
Q 016224          202 PWIFIGVTNFVKAWNTQTNTDL------SLSGPVGQVYAMAVGND---LLFAGTQDGAILAWKFNVTTNCFEPAASLKGH  272 (393)
Q Consensus       202 ~~l~~~~~~~i~v~d~~~~~~~------~~~~~~~~v~~l~~~~~---~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~  272 (393)
                      .+|+.+..+.|+-.+++.....      .+..+...+..|+|+..   ++.+-..++.|+..++.....    .......
T Consensus         2 ~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~----~~v~~~~   77 (263)
T d1npea_           2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP----TTIIRQD   77 (263)
T ss_dssp             EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC----EEEECTT
T ss_pred             CEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc----EEEEEec
Confidence            3455555566666666544321      23334445777888754   444445677888888876432    1222222


Q ss_pred             eeeEEEEEEc--CCEEE-EecCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEE-EEeCCCcEEEE--EcCCCc
Q 016224          273 SLAVVSLVVG--ANKLY-SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLL-SCSLDKTIKVW--FATDSG  344 (393)
Q Consensus       273 ~~~v~~l~~~--~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~-s~s~dg~i~iw--d~~~~~  344 (393)
                      ...+..++++  ++.|+ +-...+.|.+.++........+.........++.+  ..+|+ +-...+..+|+  ++.. .
T Consensus        78 ~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG-~  156 (263)
T d1npea_          78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-T  156 (263)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-C
T ss_pred             cccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCC-C
Confidence            2345566665  55554 55667899999987654433333333566788886  33444 33222333444  4432 2


Q ss_pred             ceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCce
Q 016224          345 NLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSV  390 (393)
Q Consensus       345 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~  390 (393)
                      ....+.. ..-.....+++.+..  +++..+-...+.|...++...
T Consensus       157 ~~~~i~~-~~~~~P~glaiD~~~--~~lYw~d~~~~~I~~~~~~g~  199 (263)
T d1npea_         157 NRRILAQ-DNLGLPNGLTFDAFS--SQLCWVDAGTHRAECLNPAQP  199 (263)
T ss_dssp             CCEEEEC-TTCSCEEEEEEETTT--TEEEEEETTTTEEEEEETTEE
T ss_pred             Cceeeee-ecccccceEEEeecC--cEEEEEeCCCCEEEEEECCCC
Confidence            2223322 222234566665443  333344456778888877654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.27  E-value=0.22  Score=40.70  Aligned_cols=218  Identities=10%  Similarity=0.029  Sum_probs=125.1

Q ss_pred             CCeEEEEECCCC----cEEEEEecCCcCCEEEEEecCCCCEEEEEe-CCCcEEEEECCCCeEEEEEecC-CceEEEE--e
Q 016224          128 CKFLHSWTVGDG----FKLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVWDCASGQCAGVINLG-GEVGCMI--S  199 (393)
Q Consensus       128 dg~i~vwd~~~~----~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~--~  199 (393)
                      .+.|+-.+++..    ......+..+...+.+|+|....+.|+-+. .++.|+..+++.......+... ..+..+.  .
T Consensus         9 ~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~   88 (263)
T d1npea_           9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDH   88 (263)
T ss_dssp             EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEET
T ss_pred             CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEec
Confidence            345665665432    111223344556688899988777776654 5678888888766555444332 2333333  2


Q ss_pred             CCCEEEE-E-cCCeEEEEECCCCceeee-cCCCCcEEEEEEeCC--EEEEEe-CCCc--EEEEEeccCCccccCceeecC
Q 016224          200 EGPWIFI-G-VTNFVKAWNTQTNTDLSL-SGPVGQVYAMAVGND--LLFAGT-QDGA--ILAWKFNVTTNCFEPAASLKG  271 (393)
Q Consensus       200 ~~~~l~~-~-~~~~i~v~d~~~~~~~~~-~~~~~~v~~l~~~~~--~l~~~~-~dg~--I~vwd~~~~~~~~~~~~~~~~  271 (393)
                      -+..|.. . ..+.|.+.++.......+ ......+..++++|.  +++... ..+.  |..-++....    .......
T Consensus        89 ~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~----~~~i~~~  164 (263)
T d1npea_          89 LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN----RRILAQD  164 (263)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC----CEEEECT
T ss_pred             cCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC----ceeeeee
Confidence            3555554 3 456899999887654433 333467889999886  444332 2223  4444444321    1111222


Q ss_pred             ceeeEEEEEEc--CCEEE-EecCCCcEEEeeCCCcceeeEeccCccceEEEEEcCCEEEEEe-CCCcEEEEEcCCCcceE
Q 016224          272 HSLAVVSLVVG--ANKLY-SGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQFLLSCS-LDKTIKVWFATDSGNLE  347 (393)
Q Consensus       272 ~~~~v~~l~~~--~~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s-~dg~i~iwd~~~~~~~~  347 (393)
                      .-.....|+++  .+.|+ +-...+.|...|+........+.+-.. -.+|++.+++|.... ..+.|...|..+++...
T Consensus       165 ~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~~~~lYwtd~~~~~I~~~~~~~g~~~~  243 (263)
T d1npea_         165 NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMD  243 (263)
T ss_dssp             TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEETTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCC-cEEEEEECCEEEEEECCCCEEEEEECCCCccce
Confidence            22344567765  55554 445678999999876554434443332 357877777665554 56788888887776655


Q ss_pred             EEE
Q 016224          348 VTY  350 (393)
Q Consensus       348 ~~~  350 (393)
                      .+.
T Consensus       244 ~~~  246 (263)
T d1npea_         244 TFH  246 (263)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.82  E-value=0.69  Score=42.50  Aligned_cols=104  Identities=18%  Similarity=0.238  Sum_probs=64.8

Q ss_pred             EecCcEEEecCCCeEEEEECCCCcEEEEEecCCc--------CCE-EEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 016224          117 WVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQ--------KVV-SGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV  187 (393)
Q Consensus       117 ~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~--------~~I-~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~  187 (393)
                      ...+.+++++.++.|.-.|..+| +++-++....        ..+ ..++..  +..|+.++.|+.+.-.|..+|+.+..
T Consensus        66 v~~g~vy~~t~~~~v~AlDa~TG-~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~  142 (582)
T d1flga_          66 VSDGVIYVTASYSRLFALDAKTG-KRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWK  142 (582)
T ss_dssp             EETTEEEEEETTTEEEEEESSSC-CEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEE
T ss_pred             EECCEEEEeCCCCeEEEEeCCCC-CeEEEEcCCCCCccccccccccCCceEe--CCceEEecCCCeEEEecccccceeee
Confidence            34567778999999999999999 6666653210        011 112222  45688889999999999999998876


Q ss_pred             EecCCc--------eEEEEe---CCCEEEEE--------cCCeEEEEECCCCcee
Q 016224          188 INLGGE--------VGCMIS---EGPWIFIG--------VTNFVKAWNTQTNTDL  223 (393)
Q Consensus       188 ~~~~~~--------~~~~~~---~~~~l~~~--------~~~~i~v~d~~~~~~~  223 (393)
                      ......        ...+..   ....++..        ..+.|.-+|.++++.+
T Consensus       143 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~  197 (582)
T d1flga_         143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEI  197 (582)
T ss_dssp             EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEE
T ss_pred             ecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEE
Confidence            553211        111111   12333322        2346888888888765

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=95.66  E-value=0.34  Score=39.72  Aligned_cols=217  Identities=16%  Similarity=0.112  Sum_probs=109.6

Q ss_pred             ceEEeeEecCcEEEecCCCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCC-eEEEEEe
Q 016224          111 DILCRNWVQGNCMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGSKDETVRVWDCASG-QCAGVIN  189 (393)
Q Consensus       111 ~i~c~~~~~~~~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~  189 (393)
                      .|..++--....+.-. ||.|..|-..+.-++ -.-......|..|+.-. ...++.  .|+.+..|..... +......
T Consensus        27 ~i~~va~G~~h~~al~-dG~v~~wG~N~~GQl-G~~~~~~~~v~~v~~G~-~~~~al--~dg~v~~wG~~~~gq~~~~~~  101 (273)
T d1jtdb_          27 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQL-TMPAATQSGVDAIAAGN-YHSLAL--KDGEVIAWGGNEDGQTTVPAE  101 (273)
T ss_dssp             SEEEEEECSSEEEEEE-TTEEEEEECCTTSTT-SCCGGGGSCCCEEEECS-SEEEEE--ETTEEEEEECCTTSTTCCCGG
T ss_pred             CcEEEEccCCEEEEEE-CCEEEEEeCCCCCce-eeeecccccceEEecCC-Cceeee--eeeeeeccCCCcceeeccccc
Confidence            4555544444444434 899999976543121 11112234555555422 222332  4899999976432 2111111


Q ss_pred             cCCceEEEEeCCCEEEEEcCCeEEEEECCCCcee-eecCCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCcee
Q 016224          190 LGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAAS  268 (393)
Q Consensus       190 ~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~  268 (393)
                      ....+..+.......++-.++.+..|........ ........|..+.-....++ ...++.++.|-......    ...
T Consensus       102 ~~~~~~~i~~~~~~~~~~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~g~~~~~G~~~~g~----~~~  176 (273)
T d1jtdb_         102 ARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTAL-AVKNGGVIAWGDNYFGQ----TTV  176 (273)
T ss_dssp             GGSSCCEEEEETTEEEEEETTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEE-EEETTEEEEEECCTTST----TSC
T ss_pred             cccceeEEeeecccccccccccceecccCCCCceeeeccCCceEEEEeccceeee-eecccceeEeecccCCc----ccc
Confidence            1122333333344444446888888875543332 22223345555554444333 33578899986554321    111


Q ss_pred             ecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCC-cceeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEc
Q 016224          269 LKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLET-LQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFA  340 (393)
Q Consensus       269 ~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~  340 (393)
                      .......|..++....+.+.-. ||.|+.|=... +++- .-......|..|+.-..+.+.- .||.|..|-.
T Consensus       177 ~~~~~~~v~~Is~G~~h~~~l~-dG~v~~WG~n~~Gql~-~~~~~~~~v~~I~~G~~~~~~l-~~g~v~~WG~  246 (273)
T d1jtdb_         177 PAEAQSGVDDVAGGIFHSLALK-DGKVIAWGDNRYKQTT-VPTEALSGVSAIASGEWYSLAL-KNGKVIAWGS  246 (273)
T ss_dssp             CGGGSSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTC-CCGGGGSSCCEEEECSSCEEEE-ETTEEEEEST
T ss_pred             cccccCCccceeccceeeEEEe-cCcEEEcCCCCCCccC-CCccCCCCcEEEEeCcceEEEE-ECCEEEEECC
Confidence            2223456778877666544433 79999995433 2221 1112233466776654443333 4899999954

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.98  E-value=0.5  Score=40.41  Aligned_cols=151  Identities=11%  Similarity=0.023  Sum_probs=81.8

Q ss_pred             EEEEecCCCCEEEEEeCCC-----------cEEEEECCCCeEEE--EEecCC----ceEEEEeCCCEEEEEc--CCeEEE
Q 016224          154 SGITLPSGSDKLYSGSKDE-----------TVRVWDCASGQCAG--VINLGG----EVGCMISEGPWIFIGV--TNFVKA  214 (393)
Q Consensus       154 ~~i~~s~~~~~l~s~s~dg-----------~v~iwd~~~~~~~~--~~~~~~----~~~~~~~~~~~l~~~~--~~~i~v  214 (393)
                      .......+++.++.|+.+.           .+.+||..+++-..  ......    ....+..++.+++.|.  .+.+.+
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~  102 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  102 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence            3344455777777776431           37789998875322  222221    1234557888888873  358999


Q ss_pred             EECCCCceeeecC---CCCcEEEEEEeCC--EEEEEeCC------CcEEEEEeccCCccc-----cCceeec-------C
Q 016224          215 WNTQTNTDLSLSG---PVGQVYAMAVGND--LLFAGTQD------GAILAWKFNVTTNCF-----EPAASLK-------G  271 (393)
Q Consensus       215 ~d~~~~~~~~~~~---~~~~v~~l~~~~~--~l~~~~~d------g~I~vwd~~~~~~~~-----~~~~~~~-------~  271 (393)
                      ||..+..-.....   .... ...+..++  +++.++.+      ..+.+||..+.+-..     .......       .
T Consensus       103 yd~~~~~w~~~~~~~~~r~~-~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~  181 (387)
T d1k3ia3         103 YDSSSDSWIPGPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS  181 (387)
T ss_dssp             EEGGGTEEEECCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred             ecCccCcccccccccccccc-cceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeec
Confidence            9998877653221   1222 23333333  66666542      358889877643110     0000000       0


Q ss_pred             ceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcce
Q 016224          272 HSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQC  305 (393)
Q Consensus       272 ~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~  305 (393)
                      ..........++..++.+..++.+.++|..+...
T Consensus       182 ~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         182 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             cceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence            0111112223566777787788888888876544

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=94.75  E-value=0.84  Score=37.14  Aligned_cols=220  Identities=15%  Similarity=0.078  Sum_probs=110.2

Q ss_pred             CcCCEEEEEecCCCCEEEEEeCCCcEEEEECCCCeEEEE-EecCCceEEEEeCCCEEEEEcCCeEEEEECCCCcee-eec
Q 016224          149 HQKVVSGITLPSGSDKLYSGSKDETVRVWDCASGQCAGV-INLGGEVGCMISEGPWIFIGVTNFVKAWNTQTNTDL-SLS  226 (393)
Q Consensus       149 h~~~I~~i~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~i~v~d~~~~~~~-~~~  226 (393)
                      ....|..|+.-..  +.+.-. ||.|..|-....-.+.. ......+..+.....+.++-.++.+..|.....-.. ...
T Consensus        24 ~~~~i~~va~G~~--h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~~~al~dg~v~~wG~~~~gq~~~~~  100 (273)
T d1jtdb_          24 AQSGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPA  100 (273)
T ss_dssp             GSSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSEEEEEETTEEEEEECCTTSTTCCCG
T ss_pred             CCCCcEEEEccCC--EEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCCceeeeeeeeeeccCCCcceeecccc
Confidence            3456888876322  333334 89999997654321111 011122333444344333335888889976443222 112


Q ss_pred             CCCCcEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCccee
Q 016224          227 GPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCI  306 (393)
Q Consensus       227 ~~~~~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~  306 (393)
                      .....+..+.......+.. .|+.+..|.-......    .........|..++-....++.. .++.++.|-.......
T Consensus       101 ~~~~~~~~i~~~~~~~~~~-~dg~v~~~g~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~-~~g~~~~~G~~~~g~~  174 (273)
T d1jtdb_         101 EARSGVDAIAAGAWASYAL-KDGKVIAWGDDSDGQT----TVPAEAQSGVTALDGGVYTALAV-KNGGVIAWGDNYFGQT  174 (273)
T ss_dssp             GGGSSCCEEEEETTEEEEE-ETTEEEEEECCTTSTT----SCCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTT
T ss_pred             ccccceeEEeeeccccccc-ccccceecccCCCCce----eeeccCCceEEEEeccceeeeee-cccceeEeecccCCcc
Confidence            2233455555555543333 4899999975443211    11111223444454444433333 4788888876543322


Q ss_pred             eEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCCCeEEEEe
Q 016224          307 QTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYD  386 (393)
Q Consensus       307 ~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd  386 (393)
                      .........|..|+....+.+.-. ||.|+.|=.....++......  ...+..++...   . ..++.  .||.|..|-
T Consensus       175 ~~~~~~~~~v~~Is~G~~h~~~l~-dG~v~~WG~n~~Gql~~~~~~--~~~v~~I~~G~---~-~~~~l--~~g~v~~WG  245 (273)
T d1jtdb_         175 TVPAEAQSGVDDVAGGIFHSLALK-DGKVIAWGDNRYKQTTVPTEA--LSGVSAIASGE---W-YSLAL--KNGKVIAWG  245 (273)
T ss_dssp             SCCGGGSSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTCCCGGG--GSSCCEEEECS---S-CEEEE--ETTEEEEES
T ss_pred             cccccccCCccceeccceeeEEEe-cCcEEEcCCCCCCccCCCccC--CCCcEEEEeCc---c-eEEEE--ECCEEEEEC
Confidence            222234456788877655544434 899999965443332221111  12344554321   1 13333  389999994

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.93  E-value=1.9  Score=34.87  Aligned_cols=221  Identities=10%  Similarity=0.051  Sum_probs=113.0

Q ss_pred             CCeEEEEECCCCcEEEEEecCCcCCEEEEEecCCCCEEEEEe-CCCcEEEEECCCCeEEEEEecCCceEEEEeCCCEEEE
Q 016224          128 CKFLHSWTVGDGFKLLTQLEGHQKVVSGITLPSGSDKLYSGS-KDETVRVWDCASGQCAGVINLGGEVGCMISEGPWIFI  206 (393)
Q Consensus       128 dg~i~vwd~~~~~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~  206 (393)
                      ...|+..++++. +....+ .....+.+|+|++..+.|+-.. .++.|.-.++......                     
T Consensus         9 ~~~I~~~~l~~~-~~~~~~-~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~---------------------   65 (266)
T d1ijqa1           9 RHEVRKMTLDRS-EYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---------------------   65 (266)
T ss_dssp             BSSEEEEETTSC-CCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------------------------
T ss_pred             CCeEEEEECCCC-cceeee-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCC---------------------
Confidence            345787888765 332223 3556778899988777666554 3444544444321100                     


Q ss_pred             EcCCeEEEEECCCCceeeecCCCCcEEEEEEe--CC-EEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcC
Q 016224          207 GVTNFVKAWNTQTNTDLSLSGPVGQVYAMAVG--ND-LLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGA  283 (393)
Q Consensus       207 ~~~~~i~v~d~~~~~~~~~~~~~~~v~~l~~~--~~-~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~  283 (393)
                                  +............+..|+++  .. +.++-...+.|.+.++.....    .............++.++
T Consensus        66 ------------~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~----~~~~~~~~~~P~~l~vd~  129 (266)
T d1ijqa1          66 ------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR----KTLFRENGSKPRAIVVDP  129 (266)
T ss_dssp             --------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE----EEEEECTTCCEEEEEEET
T ss_pred             ------------cceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceE----EEEEcCCCCCcceEEEEc
Confidence                        00001112222344556664  33 455555667888888876421    122222233445666653


Q ss_pred             --CEEEEe--cCCCcEEEeeCCCcceeeEeccCccceEEEEEc--CCEEE-EEeCCCcEEEEEcCCCcceEEEEeecCCc
Q 016224          284 --NKLYSG--SMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCW--DQFLL-SCSLDKTIKVWFATDSGNLEVTYTHNEEH  356 (393)
Q Consensus       284 --~~l~sg--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~  356 (393)
                        .+|+-.  +..+.|.-.++............-.....++++  ++.|. +-...+.|...++................
T Consensus       130 ~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~  209 (266)
T d1ijqa1         130 VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA  209 (266)
T ss_dssp             TTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTS
T ss_pred             ccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCccc
Confidence              344332  234567667765433332233333455777776  45454 44567889988886544333333332223


Q ss_pred             cEEEEEeeeCCCCCcEEEEEeCCCeEEEEeCCcee
Q 016224          357 GVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSVI  391 (393)
Q Consensus       357 ~v~~~~~~~~~~~~~~l~s~s~dg~I~iwd~~s~~  391 (393)
                      ....++..  .  +.+..+-..++.|...+..+++
T Consensus       210 ~p~~lav~--~--~~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         210 HPFSLAVF--E--DKVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             SEEEEEEE--T--TEEEEEETTTTEEEEEETTTCC
T ss_pred             ccEEEEEE--C--CEEEEEECCCCeEEEEECCCCc
Confidence            34555543  2  2244444567888888776653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=91.97  E-value=3.5  Score=35.73  Aligned_cols=180  Identities=9%  Similarity=0.129  Sum_probs=95.4

Q ss_pred             CCCEEEEEe-CCCcEEEEECCCCeEEEEEecC--CceEEEE----eCCCEEEEEcC-------------------CeEEE
Q 016224          161 GSDKLYSGS-KDETVRVWDCASGQCAGVINLG--GEVGCMI----SEGPWIFIGVT-------------------NFVKA  214 (393)
Q Consensus       161 ~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~--~~~~~~~----~~~~~l~~~~~-------------------~~i~v  214 (393)
                      ||++|+... .+..|-+-|+++.++.+.+..+  .....+.    +...++++...                   +.+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            788888776 5789999999999987766543  3333322    24556665433                   23567


Q ss_pred             EECCCCceeeecCCCCcEEEEEEeCC--EEEEEeCCC---------------cEEEEEe---------------------
Q 016224          215 WNTQTNTDLSLSGPVGQVYAMAVGND--LLFAGTQDG---------------AILAWKF---------------------  256 (393)
Q Consensus       215 ~d~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~dg---------------~I~vwd~---------------------  256 (393)
                      +|..+.+......-......+.++++  ++++.+.+.               .+.+++.                     
T Consensus       178 ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VV  257 (459)
T d1fwxa2         178 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV  257 (459)
T ss_dssp             EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred             EecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceee
Confidence            88887776522222234445666666  555544321               1333332                     


Q ss_pred             --ccCCccccCceeec-CceeeEEEEEEcCCE-EEEecCCCcEEEeeCCCcceee--------Eec---cCccceEEEEE
Q 016224          257 --NVTTNCFEPAASLK-GHSLAVVSLVVGANK-LYSGSMDNSIRVWNLETLQCIQ--------TLT---EHTSVVMSLLC  321 (393)
Q Consensus       257 --~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~-l~sg~~dg~i~iwd~~~~~~~~--------~~~---~~~~~v~~l~~  321 (393)
                        +.... ...+..+. +....=..++.++++ ++++..+.++.|+|++....+.        .+.   ...-.-.-.+|
T Consensus       258 D~~~~~~-~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~f  336 (459)
T d1fwxa2         258 DGRKEAS-SLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAF  336 (459)
T ss_dssp             ECSGG---CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEE
T ss_pred             cccccCC-cceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcccccc
Confidence              21100 00110110 000011244556776 4556679999999997532211        000   01111234456


Q ss_pred             cC--CEEEEEeCCCcEEEEEcC
Q 016224          322 WD--QFLLSCSLDKTIKVWFAT  341 (393)
Q Consensus       322 ~~--~~l~s~s~dg~i~iwd~~  341 (393)
                      ++  ....|--.|.+|.-|++.
T Consensus       337 d~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         337 DGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CTTSEEEEEETTTTEEEEEEHH
T ss_pred             CCCceEEEEeeccceEEEEecc
Confidence            63  344455679999999984

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.22  E-value=4.5  Score=35.53  Aligned_cols=60  Identities=7%  Similarity=-0.052  Sum_probs=36.8

Q ss_pred             ceEEeeEecCc-EEEecCCCeEEEEECCCCcEEEEEecCCcCCE-----------------EEEEecCCCCEEEEEeC
Q 016224          111 DILCRNWVQGN-CMYGEKCKFLHSWTVGDGFKLLTQLEGHQKVV-----------------SGITLPSGSDKLYSGSK  170 (393)
Q Consensus       111 ~i~c~~~~~~~-~~~g~~dg~i~vwd~~~~~~~~~~l~~h~~~I-----------------~~i~~s~~~~~l~s~s~  170 (393)
                      .+.-..|+|++ .++=..++.|.+.+..++.....+..+-...|                 .++.|||||++||....
T Consensus       115 ~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~  192 (465)
T d1xfda1         115 KLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI  192 (465)
T ss_dssp             CCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred             ccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEe
Confidence            34456788774 23223467888888776633323333333323                 46779999999998753

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=90.91  E-value=4.5  Score=35.00  Aligned_cols=84  Identities=10%  Similarity=0.082  Sum_probs=55.5

Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEecC--------------------------------------------CceEEEE--
Q 016224          165 LYSGSKDETVRVWDCASGQCAGVINLG--------------------------------------------GEVGCMI--  198 (393)
Q Consensus       165 l~s~s~dg~v~iwd~~~~~~~~~~~~~--------------------------------------------~~~~~~~--  198 (393)
                      +.||+..|.|+|+-+-+++.+..+..-                                            .+..+..  
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            567888899999988888777666410                                            0111111  


Q ss_pred             -eCCCEEEEE--cCCeEEEEECCCCceee--ecCCCCcEEEEEEeC--C--EEEEEeCC
Q 016224          199 -SEGPWIFIG--VTNFVKAWNTQTNTDLS--LSGPVGQVYAMAVGN--D--LLFAGTQD  248 (393)
Q Consensus       199 -~~~~~l~~~--~~~~i~v~d~~~~~~~~--~~~~~~~v~~l~~~~--~--~l~~~~~d  248 (393)
                       .+|+++++.  .++.|.+.|+++.+...  .......+..+....  +  +++..+.+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~  154 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGED  154 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECS
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCcc
Confidence             268899987  56699999999988753  334455667777644  3  77766653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.88  E-value=5.5  Score=34.39  Aligned_cols=239  Identities=11%  Similarity=0.086  Sum_probs=121.1

Q ss_pred             CcCCEEEEEecCCCCEEEEE-eCC----CcEEEEECCCCeEEEE-EecC-CceEEEEeCCCEEEEE-cC-----------
Q 016224          149 HQKVVSGITLPSGSDKLYSG-SKD----ETVRVWDCASGQCAGV-INLG-GEVGCMISEGPWIFIG-VT-----------  209 (393)
Q Consensus       149 h~~~I~~i~~s~~~~~l~s~-s~d----g~v~iwd~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~~-~~-----------  209 (393)
                      +.-.+..++++|++++++-+ +.+    -.|+++|+.+++.+.. +... .....+..++..++-. .+           
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~  202 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET  202 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCccccccc
Confidence            33445567789999988744 333    3799999999987653 2221 2334455677766532 21           


Q ss_pred             -----CeEEEEECCCCce---eeecCC--CCcEEEEEEeCC--EEE-EEe--CCCc--EEEEEeccCCcccc----Ccee
Q 016224          210 -----NFVKAWNTQTNTD---LSLSGP--VGQVYAMAVGND--LLF-AGT--QDGA--ILAWKFNVTTNCFE----PAAS  268 (393)
Q Consensus       210 -----~~i~v~d~~~~~~---~~~~~~--~~~v~~l~~~~~--~l~-~~~--~dg~--I~vwd~~~~~~~~~----~~~~  268 (393)
                           ..|..+.+.+...   +.+...  ...+..+..+.+  +++ ...  .+..  +.+.|+........    ....
T Consensus       203 ~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  282 (430)
T d1qfma1         203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL  282 (430)
T ss_dssp             CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred             ccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEe
Confidence                 2577777766532   223322  234566666666  333 222  2333  44445444322111    1112


Q ss_pred             ecCceeeEEEEEEcCCEEEEec----CCCcEEEeeCCCcce--eeEec-cCccceE--EEEEcCCEEEEEe-CCC--cEE
Q 016224          269 LKGHSLAVVSLVVGANKLYSGS----MDNSIRVWNLETLQC--IQTLT-EHTSVVM--SLLCWDQFLLSCS-LDK--TIK  336 (393)
Q Consensus       269 ~~~~~~~v~~l~~~~~~l~sg~----~dg~i~iwd~~~~~~--~~~~~-~~~~~v~--~l~~~~~~l~s~s-~dg--~i~  336 (393)
                      .........-+...++.++.-+    .++.|...++.....  ...+- .+...+.  .+.+.+++|+..- .++  .|+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~  362 (430)
T d1qfma1         283 IDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQ  362 (430)
T ss_dssp             ECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEE
T ss_pred             ecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEE
Confidence            2222233333444555443322    346777777765432  23333 3444343  3445567666554 554  488


Q ss_pred             EEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeC---CCeEEEEeCCcee
Q 016224          337 VWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN---DNSVRFYDLPSVI  391 (393)
Q Consensus       337 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~---dg~I~iwd~~s~~  391 (393)
                      ++++..+..... .. .....+..+...+.  +..+.++-++   =.++..+|+.+++
T Consensus       363 v~~~~~~~~~~~-~~-~~~~sv~~~~~~~~--~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         363 LHDLATGALLKI-FP-LEVGSVVGYSGQKK--DTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEETTTCCEEEE-EC-CCSSEEEEEECCTT--CSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEECCCCcEEEe-cC-CCCceEeeccCCCC--CCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            899876654333 22 22233444433332  2234443332   3678899998774

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.37  E-value=5  Score=31.95  Aligned_cols=211  Identities=13%  Similarity=0.113  Sum_probs=92.6

Q ss_pred             cEEEEECCCCeEEEEEecCC---ceEEEEeCCCEEEEEc----------CCeEEEEECCCCceeeecC---CCCcEEEEE
Q 016224          173 TVRVWDCASGQCAGVINLGG---EVGCMISEGPWIFIGV----------TNFVKAWNTQTNTDLSLSG---PVGQVYAMA  236 (393)
Q Consensus       173 ~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~----------~~~i~v~d~~~~~~~~~~~---~~~~v~~l~  236 (393)
                      .+.+||+.+++-...-..+.   .......++.+++.|.          ...+.+||..+.+......   ....-.+..
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~   99 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV   99 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE
T ss_pred             eEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceeccc
Confidence            67889988876443322221   1122333555555431          2367888988776553221   111122333


Q ss_pred             EeCCEEEEEeCCCcE-----EEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCC-----CcEEEeeCCCccee
Q 016224          237 VGNDLLFAGTQDGAI-----LAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMD-----NSIRVWNLETLQCI  306 (393)
Q Consensus       237 ~~~~~l~~~~~dg~I-----~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d-----g~i~iwd~~~~~~~  306 (393)
                      +...+++.++.++..     ..+|..+..-  ......................++.|+.+     ..+..||..+.+..
T Consensus       100 ~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~  177 (288)
T d1zgka1         100 IDGHIYAVGGSHGCIHHNSVERYEPERDEW--HLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWR  177 (288)
T ss_dssp             ETTEEEEECCEETTEECCCEEEEETTTTEE--EECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred             cceeeEEecceecccccceeeeeccccCcc--ccccccccccccceeeeeeecceEecCcccccccceEEEeeccccccc
Confidence            333345555444433     3344433221  11111111111112233445555555543     45778888765432


Q ss_pred             eEec--cCccceEEEEEcCCEEEEEeCC-----CcEEEEEcCCCcceEEEEeecCCccEEEEEeeeCCCCCcEEEEEeCC
Q 016224          307 QTLT--EHTSVVMSLLCWDQFLLSCSLD-----KTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCND  379 (393)
Q Consensus       307 ~~~~--~~~~~v~~l~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~s~s~d  379 (393)
                      ..-.  ............+..++.++.+     ..+.++|..+... ..+........-.+++..    ++++++.|+.+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~r~~~~~~~~----~~~l~v~GG~~  252 (288)
T d1zgka1         178 MITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW-TFVAPMKHRRSALGITVH----QGRIYVLGGYD  252 (288)
T ss_dssp             ECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE----TTEEEEECCBC
T ss_pred             cccccccccccccccceeeeEEEecCccccccccceeeeeecceee-ecccCccCcccceEEEEE----CCEEEEEecCC
Confidence            2111  1111112233335566666544     3456677654332 222111111111112211    33477777654


Q ss_pred             C-----eEEEEeCCce
Q 016224          380 N-----SVRFYDLPSV  390 (393)
Q Consensus       380 g-----~I~iwd~~s~  390 (393)
                      +     .|.+||+.+.
T Consensus       253 ~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         253 GHTFLDSVECYDPDTD  268 (288)
T ss_dssp             SSCBCCEEEEEETTTT
T ss_pred             CCeecceEEEEECCCC
Confidence            3     3788998764

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.77  E-value=0.17  Score=24.73  Aligned_cols=25  Identities=32%  Similarity=1.071  Sum_probs=20.7

Q ss_pred             cccceeeeecccccCCC-CCCccccc
Q 016224           33 TRQKVCNYWRAGKCNRF-PCPYLHRE   57 (393)
Q Consensus        33 ~~~~~~~~~~~~~~~~~-~~~~~~~~   57 (393)
                      +....|.+..+|-|.|. .|+|+|.+
T Consensus         4 kkkelCKfYvqGyCtrgenC~ymH~e   29 (29)
T d2cqea2           4 KKRELCKFYITGFCARAENCPYMHGD   29 (29)
T ss_dssp             CCCSBCTTTTTTCCSCSTTCSSBSSS
T ss_pred             hhhhhhhhheeeeecCCcCcccccCC
Confidence            44568999999999995 59999964

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.70  E-value=8.4  Score=32.69  Aligned_cols=99  Identities=16%  Similarity=0.123  Sum_probs=64.9

Q ss_pred             cEEEEEEeCCEEEEEeCCCcEEEEEeccCCccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEeeCCCcceeeEec
Q 016224          231 QVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLT  310 (393)
Q Consensus       231 ~v~~l~~~~~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~  310 (393)
                      .|..++|+.+.|++.. ++.+..++...-..    ......-...+..+.+.++.++....++.+.++++..++..... 
T Consensus        88 ~v~~vafs~d~l~v~~-~~~l~~~~~~~l~~----~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~-  161 (381)
T d1xipa_          88 DVIFVCFHGDQVLVST-RNALYSLDLEELSE----FRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLA-  161 (381)
T ss_dssp             TEEEEEEETTEEEEEE-SSEEEEEESSSTTC----EEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEE-
T ss_pred             CeEEEEeeCCEEEEEe-CCCEEEEEeecccc----ccccccccccccceecCCceeEEEecCCCEEEEEeccCcccccc-
Confidence            6888999988766654 45677776655321    11212223457888888998888888999999999887543222 


Q ss_pred             cCccceEEEEEcCCEEEEEeCCCcEEEE
Q 016224          311 EHTSVVMSLLCWDQFLLSCSLDKTIKVW  338 (393)
Q Consensus       311 ~~~~~v~~l~~~~~~l~s~s~dg~i~iw  338 (393)
                         ..+.++.+.++..+.+-.++.++++
T Consensus       162 ---~~v~~~~~~~~~~~v~ws~kgkq~v  186 (381)
T d1xipa_         162 ---QNVTSFDVTNSQLAVLLKDRSFQSF  186 (381)
T ss_dssp             ---ESEEEEEECSSEEEEEETTSCEEEE
T ss_pred             ---CCcceEEecCCceEEEEeCCcEEEE
Confidence               2455666666666666666665555

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.41  E-value=6.6  Score=31.19  Aligned_cols=210  Identities=13%  Similarity=0.163  Sum_probs=97.6

Q ss_pred             eEEEEECCCC-cEEEEEecCCcCCEEEEEecCCCCEEEEEeC---------CCcEEEEECCCCeEEEEEecCC---ceEE
Q 016224          130 FLHSWTVGDG-FKLLTQLEGHQKVVSGITLPSGSDKLYSGSK---------DETVRVWDCASGQCAGVINLGG---EVGC  196 (393)
Q Consensus       130 ~i~vwd~~~~-~~~~~~l~~h~~~I~~i~~s~~~~~l~s~s~---------dg~v~iwd~~~~~~~~~~~~~~---~~~~  196 (393)
                      .+.+||..++ ++.+..+......-..+.+  ++.+++.|+.         -..+.+||..+.+....-..+.   ...+
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~   97 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV   97 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred             eEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceec
Confidence            5788998876 2233233322222122222  4555555542         1367788887766544322221   1233


Q ss_pred             EEeCCCEEEEE-c-----CCeEEEEECCCCceeeecCCCC--cEEEEEEeCC-EEEEEeCC-----CcEEEEEeccCCcc
Q 016224          197 MISEGPWIFIG-V-----TNFVKAWNTQTNTDLSLSGPVG--QVYAMAVGND-LLFAGTQD-----GAILAWKFNVTTNC  262 (393)
Q Consensus       197 ~~~~~~~l~~~-~-----~~~i~v~d~~~~~~~~~~~~~~--~v~~l~~~~~-~l~~~~~d-----g~I~vwd~~~~~~~  262 (393)
                      ...++++++.+ .     ......++..+...........  .-.++....+ +++.|+.+     ..+..||.....- 
T Consensus        98 ~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~-  176 (288)
T d1zgka1          98 GVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW-  176 (288)
T ss_dssp             EEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEE-
T ss_pred             cccceeeEEecceecccccceeeeeccccCccccccccccccccceeeeeeecceEecCcccccccceEEEeecccccc-
Confidence            34456655553 2     2245667777765542222111  1122233344 55555543     3466777655421 


Q ss_pred             ccCceeecCceeeEEEEEEcCCEEEEecCC-----CcEEEeeCCCcceeeE--eccCccceEEEEEcCCEEEEEeCCCc-
Q 016224          263 FEPAASLKGHSLAVVSLVVGANKLYSGSMD-----NSIRVWNLETLQCIQT--LTEHTSVVMSLLCWDQFLLSCSLDKT-  334 (393)
Q Consensus       263 ~~~~~~~~~~~~~v~~l~~~~~~l~sg~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~l~s~s~dg~-  334 (393)
                       ...................+..++.|+.+     ..+..+|..+.+....  ..........+...+++++.|+.++. 
T Consensus       177 -~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~  255 (288)
T d1zgka1         177 -RMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHT  255 (288)
T ss_dssp             -EECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSC
T ss_pred             -ccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEEEecCCCCe
Confidence             11111111111112233345556665544     3567777766543221  11111122344455777777765543 


Q ss_pred             ----EEEEEcCCC
Q 016224          335 ----IKVWFATDS  343 (393)
Q Consensus       335 ----i~iwd~~~~  343 (393)
                          |.+||+.+.
T Consensus       256 ~~~~v~~yd~~~~  268 (288)
T d1zgka1         256 FLDSVECYDPDTD  268 (288)
T ss_dssp             BCCEEEEEETTTT
T ss_pred             ecceEEEEECCCC
Confidence                778888654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.29  E-value=8.8  Score=32.54  Aligned_cols=139  Identities=12%  Similarity=0.100  Sum_probs=85.1

Q ss_pred             CcEEEEEEeCC--EEEEEeCCCcEEEEEeccC---------CccccCceeecCceeeEEEEEEcCCEEEEecCCCcEEEe
Q 016224          230 GQVYAMAVGND--LLFAGTQDGAILAWKFNVT---------TNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVW  298 (393)
Q Consensus       230 ~~v~~l~~~~~--~l~~~~~dg~I~vwd~~~~---------~~~~~~~~~~~~~~~~v~~l~~~~~~l~sg~~dg~i~iw  298 (393)
                      ....-+++++.  ++++|+.++ ++|..+..-         ...+++..    .-..|..++++++.|+... ++.+..+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~----~ip~v~~vafs~d~l~v~~-~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK----EIPDVIFVCFHGDQVLVST-RNALYSL  110 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE----ECTTEEEEEEETTEEEEEE-SSEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc----CCCCeEEEEeeCCEEEEEe-CCCEEEE
Confidence            44556777776  777777665 567664321         11111111    1235788899988877664 4567778


Q ss_pred             eCCCcceeeEeccCccceEEEEEcCCEEEEEeCCCcEEEEEcCCCcceEEEEe---ecCCccEEEEEeeeCCCCCcEEEE
Q 016224          299 NLETLQCIQTLTEHTSVVMSLLCWDQFLLSCSLDKTIKVWFATDSGNLEVTYT---HNEEHGVLALCGMPDSEGKPVLLC  375 (393)
Q Consensus       299 d~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~l~s  375 (393)
                      +..+.........-..++.++.+.+..++....++.+.++++.+.........   ......+.+++|++.   +..+++
T Consensus       111 ~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~k---gkq~v~  187 (381)
T d1xipa_         111 DLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDR---SFQSFA  187 (381)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTS---CEEEEE
T ss_pred             EeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCC---cEEEEE
Confidence            87765444444444567888999988889999999999999987754332211   111234666666433   335555


Q ss_pred             Ee
Q 016224          376 SC  377 (393)
Q Consensus       376 ~s  377 (393)
                      +.
T Consensus       188 ~~  189 (381)
T d1xipa_         188 WR  189 (381)
T ss_dssp             EE
T ss_pred             eC
Confidence            53

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.57  E-value=0.19  Score=27.62  Aligned_cols=26  Identities=19%  Similarity=0.577  Sum_probs=20.3

Q ss_pred             cccceeeeecc-cccCCCC-CCcccccC
Q 016224           33 TRQKVCNYWRA-GKCNRFP-CPYLHREL   58 (393)
Q Consensus        33 ~~~~~~~~~~~-~~~~~~~-~~~~~~~~   58 (393)
                      -.-+.|.+|.. |.|+.-+ |.|.|.+.
T Consensus         7 yKT~lC~~~~~~g~C~~G~~C~FAHg~~   34 (40)
T d1m9oa_           7 YKTELCRTYSESGRCRYGAKCQFAHGLG   34 (40)
T ss_dssp             CCSCCCSGGGGTSCCTTTTTCSSCSSSC
T ss_pred             cccccChhhhcCCcCCCCCCCCCCCCHH
Confidence            35578999975 8999855 99999653