Citrus Sinensis ID: 016257

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--
Protein Sequence
MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVARNQHGGPKIESILRDPQSSDDQNMWNAFDPLDM
Secondary Structure (PSIPRED)
cccccEEEEEEEEcccccEEEEEEcccEEEEcccccEEEEEEcccEEEEEEcccEEEccccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEEcccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEccccccccEEEEEEcccccEEEEccccccEEEEEccccEEEEEccccccccEEEEEEccccccccccEEEEEEcccEEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEccccccEEEEEEEcEEEEEEEcccEEEEEEccccEEEEcccccccccccccEEEEEEEccccccccEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEEEcccccEEEEEEEEEEEEEcccccEEEEccccEEEEEEcccccEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEcccccccEEEEEEEcccccEEEEEEEEccccccEEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccccEEEEEEEcccccEEEEEccccEEEEEEcccccEcccEEEEEEEEEEcccccEEEEEEccccEEEEEccccccccccccEEEEccccccccccccccccccccc
Coil and Loop (DISEMBL)
megggtvtcgswikrpenvnLVVLGkssrassspsvleifsfdpkttsvytsplvtyvfdesegdpmtiavnpsgddfvcsttnggcklfevyggatdinllakkmpplqdagpqkclsfsvdgsrfaaggvdghlrimhwpslriildepkahksvldmdfsldSEFLattstdgsariwktEDGVAWTFltrnsdekielcrfskdgtkpflfctvqrgdKALLAVYDISTwnkighkrllrkpasvlsISLDGKylamgskdgdicvvDVKKMEINHWSKRLHLGTsialvefcptqRVVLTASKEWGAMITkltvpadwkEWQIYSLLLALFLASAVVFYIFFEnsdsfwnfpvarnqhggpkiesilrdpqssddqnmwnafdpldm
Flexible Loop (DISEMBL)
megggtvtcgswikrpenVNLVVLGkssrassspsvleifsfdpkttsvytSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLAttstdgsariwkteDGVAWTFLTRNSDEKIELCrfskdgtkpflFCTVQRGDKALLAVYDISTwnkighkrllrkpasvLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVARNQHGGPKIESilrdpqssddqnmwnafdpldm
Low Complexity Region (SEG)
MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYslllalflasavvfYIFFENSDSFWNFPVARNQHGGPKIESILRDPQSSDDQNMWNAFDPLDM
Disordered region (IsUnstruct)
******VTCGSWIKRPENVNLVVLG**********VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVAR********************************
Disordered Region (DISOPRED)
*EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVARNQHGGPKIESILRDPQSSDDQNMWNAFDPLD*
Disordered Region (DISEMBL)
MEGGGTVTCGSWIKRPENVNLVVLGKS********VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVARNQHGGPKIESILRDPQSSDDQNMWNAFDPLDM
Disordered Region (DISPRO)
***GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVARNQHGGPKIESILRD*********WN*******
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVARNQHGGPKIESILRDPQSSDDQNMWNAFDPLDM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	392	2.2.26 [Sep-21-2011]
Q8GYE0	398	SEC12-like protein 1 OS=A	yes	no	0.966	0.952	0.627	1e-144
Q39221	393	SEC12-like protein 2 OS=A	no	no	0.716	0.715	0.294	2e-26
Q9WUQ2	417	Prolactin regulatory elem	yes	no	0.456	0.429	0.276	4e-08
Q9WTV0	417	Prolactin regulatory elem	yes	no	0.461	0.434	0.275	5e-08
Q5ZME8	513	WD40 repeat-containing pr	yes	no	0.420	0.321	0.247	2e-07
Q9HCU5	417	Prolactin regulatory elem	yes	no	0.466	0.438	0.257	3e-07
Q9I9H8	1261	Apoptotic protease-activa	no	no	0.428	0.133	0.279	6e-07
Q99M63	513	WD40 repeat-containing pr	no	no	0.420	0.321	0.235	6e-07
Q6NRT3	513	WD40 repeat-containing pr	N/A	no	0.420	0.321	0.241	7e-07
Q3UKJ7	513	WD40 repeat-containing pr	no	no	0.420	0.321	0.235	7e-07

>sp|Q8GYE0|PHF1_ARATH SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=2 SV=2

 Score =  511 bits (1316), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/387 (62%), Positives = 303/387 (78%), Gaps = 8/387 (2%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSR----ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD 60
           G V CGSWI+RP+ VN V++ K+S+    + SSP++L IFSFDP T S+ +SPL T+   
Sbjct: 11  GHVVCGSWIRRPKKVNWVLIAKASKRRGSSVSSPALLNIFSFDPITASLSSSPLATHTLK 70

Query: 61  ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF 120
           +S+GDP+ ++V+P GD FVCST+ GGCKLFE+ GGAT I +LAK++ PLQ+AG QKC++F
Sbjct: 71  DSDGDPVAVSVHPGGDYFVCSTSKGGCKLFELVGGATGITILAKELLPLQNAGLQKCMAF 130

Query: 121 SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI 180
           S DGS+ A GGVDG LRIM WP+L +ILDEPKAHKS+ DMDFSLDSEFLATTSTDGSARI
Sbjct: 131 SFDGSKLAVGGVDGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARI 190

Query: 181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240
           WK EDG   + L R+ DE IELCRFSKDGTKPFLFC  QRGD  ++ VYDISTW K+G K
Sbjct: 191 WKAEDGFPLSTLERSGDENIELCRFSKDGTKPFLFCAAQRGDTPMVNVYDISTWKKLGFK 250

Query: 241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300
           +L RK AS +++SLDGKY+A+G KDGD+ V +VK MEI H+SKRLHLG SIA +EFCP++
Sbjct: 251 KLSRKTASTMAVSLDGKYIALGGKDGDVSVAEVKTMEIYHYSKRLHLGQSIASLEFCPSE 310

Query: 301 RVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVAR 360
           RV+LT S EWG M+TKLTVP +WKEWQIY+LL  LF+AS +  Y+FFENSDSFW  P+ +
Sbjct: 311 RVMLTTSSEWGEMVTKLTVPKEWKEWQIYALLFCLFMASVIAAYVFFENSDSFWKLPMGK 370

Query: 361 NQHGGPKIESILRDPQS--SDDQNMWN 385
           +Q   PKI S+     S  S+D + WN
Sbjct: 371 DQK-RPKI-SLFGGSSSTPSEDHSRWN 395

Involved in Pi uptake by facilitating the trafficking of PHT1-1/PHT1;1 from the endoplasmic reticulum to the plasma membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39221|STLP2_ARATH SEC12-like protein 2 OS=Arabidopsis thaliana GN=STL2P PE=1 SV=4

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 138/295 (46%), Gaps = 14/295 (4%)

Query: 35  SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYG 94
           +V+ I   D  T S+   PL   V       P  +AV+P     +C+  N  CKLF    
Sbjct: 75  NVILICRVDLNTNSLSEQPLGRLVVGSDL--PYRMAVHPREGGLICALPNS-CKLFHWED 131

Query: 95  GATDINLLAKK----MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE 150
             +  +  A +    +  L+D G Q  L+F+ +GS  AAG  DG LR+  WPS+  +L+E
Sbjct: 132 IMSREDNQAGESEEVIKELRDVGQQLALAFNPEGSVLAAGAEDGTLRVFKWPSMNTLLNE 191

Query: 151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210
            +AH SV  + FS   +FL +       R+W      A   L++  DE    CRFS D  
Sbjct: 192 SQAHSSVKCLTFSESGQFLVSLGGP-VCRVWDVNASAAVASLSKEKDEMFASCRFSVDSA 250

Query: 211 KP---FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD 267
                ++    +RG   +    D   W +   K + +   S  ++S DGK LA+G+ +GD
Sbjct: 251 GNEVLYIAANTERGGSIITC--DTKLWKRKWSKPIKKNSISAFNVSADGKLLAIGTLEGD 308

Query: 268 ICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD 322
           + +++  +M+     K+ HLG   AL  F P  R +++ S +  A +T +    D
Sbjct: 309 VLILESTRMQTIQVVKKAHLGLVTALT-FSPDSRGLVSVSFDSRARLTMIEQKGD 362

Required for the formation or budding of transport vesicles from the ER.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9WUQ2|PREB_MOUSE Prolactin regulatory element-binding protein OS=Mus musculus GN=Preb PE=1 SV=1

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 27/206 (13%)

Query: 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTS 173
           QK + F+ D +  A GG DGH+R+   PSL  +L E KAH+  + D+    D + L T  
Sbjct: 157 QKVVCFNHDNTLLATGGTDGHVRVWKVPSLEKVL-EFKAHEGEIGDLTLGPDGK-LVTVG 214

Query: 174 TDGSARIWK----------TEDGVAWTFLTRNSDEKIELCRFSK--DGTKPFLFCTVQRG 221
            D  A +W+           E+G A    + N+  + + CRF +  D        TVQ  
Sbjct: 215 WDFKASVWQKDQLVTQLQWQENGPA----SSNTPYRYQACRFGQVPDQLGGLRLFTVQIP 270

Query: 222 DKAL-------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK 274
            K L       L  +D ST+  +  +    +  S LS+S  G +L +G+  G + +    
Sbjct: 271 HKRLRQPPPCYLTAWDSSTFLPLRTRSCGHEVISCLSVSDSGTFLGLGTVTGSVAIYIAF 330

Query: 275 KMEINHWSKRLHLGTSIALVEFCPTQ 300
            ++  ++ K  H G  +  V F P +
Sbjct: 331 SLQRLYYVKEAH-GIVVTDVTFLPEK 355

Was first identified based on its probable role in the regulation of pituitary gene transcription. Binds to the prolactin gene (PRL) promoter and seems to activate transcription (By similarity). Guanine nucleotide exchange factor that activates SARA2. Required for the formation of COPII transport vesicles from the ER.

Mus musculus (taxid: 10090)

>sp|Q9WTV0|PREB_RAT Prolactin regulatory element-binding protein OS=Rattus norvegicus GN=Preb PE=2 SV=2

 Score = 59.3 bits (142), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 19/200 (9%)

Query: 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTS 173
           QK + F+ D +  A GG DGH+R+   PSL  +L E KAH+  + D+    D + L T  
Sbjct: 157 QKVVCFNHDNTLLATGGSDGHVRVWKVPSLEKVL-EFKAHEGEIGDLALGPDGK-LVTVG 214

Query: 174 TDGSARIWKTEDGVA---WTF---LTRNSDEKIELCRFSKDGTKP--FLFCTVQRGDKAL 225
            D  A +W+ +  V    W      + N+  + + CRF +   +P      TVQ   K L
Sbjct: 215 WDFKASVWQKDQLVTQLQWQENGPTSSNTPYRYQACRFGQVPDQPGGLRLFTVQIPHKRL 274

Query: 226 -------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI 278
                  L  +D ST+  +  +    +  S L++S  G +L +G+  G + +     ++ 
Sbjct: 275 RQPPPCYLTAWDSSTFLPLQTRSCGHEVISCLTVSESGTFLGLGTVTGSVAIYIAFSLQR 334

Query: 279 NHWSKRLHLGTSIALVEFCP 298
            ++ K  H G  +  V F P
Sbjct: 335 LYYVKEAH-GIVVTDVTFLP 353

Was first identified based on its probable role in the regulation of pituitary gene transcription. Binds to the prolactin gene (PRL) promoter and seems to activate transcription. Guanine nucleotide exchange factor that activates SARA2. Required for the formation of COPII transport vesicles from the ER.

Rattus norvegicus (taxid: 10116)

>sp|Q5ZME8|SMU1_CHICK WD40 repeat-containing protein SMU1 OS=Gallus gallus GN=SMU1 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 13/178 (7%)

Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
           +C  FS DG     G VDG + + ++ + +I  D + +A  + + MD       FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277

Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227
            LAT + DG  ++WK + G       R   + +    FSKD ++      +       + 
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ-----ILSASFDQTIR 332

Query: 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285
           ++ + +   +   R      +  + + DG Y+   S DG + V +VK  E ++  K L
Sbjct: 333 IHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKVWNVKTTECSNTFKSL 390

Gallus gallus (taxid: 9031)

>sp|Q9HCU5|PREB_HUMAN Prolactin regulatory element-binding protein OS=Homo sapiens GN=PREB PE=1 SV=2

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 19/202 (9%)

Query: 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTS 173
           QK + F+ D +  A GG DG++R+   PSL  +L E KAH+  + D+    D + L T  
Sbjct: 157 QKVVCFNHDNTLLATGGTDGYVRVWKVPSLEKVL-EFKAHEGEIEDLALGPDGK-LVTVG 214

Query: 174 TDGSARIWKTEDGVAWTFLTRN------SDEKIELCRFSKDGTKP--FLFCTVQRGDKAL 225
            D  A +W+ +  V       N      +  + + CRF +   +P      TVQ   K L
Sbjct: 215 RDLKASVWQKDQLVTQLHWQENGPTFSSTPYRYQACRFGQVPDQPAGLRLFTVQIPHKRL 274

Query: 226 -------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI 278
                  L  +D S +  +  K    +  S L +S  G +L +G+  G + +     ++ 
Sbjct: 275 RQPPPCYLTAWDGSNFLPLRTKSCGHEVVSCLDVSESGTFLGLGTVTGSVAIYIAFSLQC 334

Query: 279 NHWSKRLHLGTSIALVEFCPTQ 300
            ++ +  H G  +  V F P +
Sbjct: 335 LYYVREAH-GIVVTDVAFLPEK 355

Was first identified based on its probable role in the regulation of pituitary gene transcription. Binds to the prolactin gene (PRL) promoter and seems to activate transcription (By similarity). Guanine nucleotide exchange factor that activates SARA2. Required for the formation of COPII transport vesicles from the ER.

Homo sapiens (taxid: 9606)

>sp|Q9I9H8|APAF_DANRE Apoptotic protease-activating factor 1 OS=Danio rerio GN=apaf1 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 11/179 (6%)

Query: 106 MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD 165
           M P Q A    C  FS DGS+ A+ G    LR+    S   +L+     + VL   FS D
Sbjct: 613 MHPHQGAVYYAC--FSKDGSKIASCGASKALRVFKSTSGEKLLELQAHEEDVLCCAFSPD 670

Query: 166 SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF-CTVQRGDKA 224
              +AT ++D   ++W  E GV         +E+I  C+F+  G +  L  C+  +    
Sbjct: 671 DRHIATCASDRKVKLWNVERGVLIREFEVEHEEQINHCQFTNTGRRVLLATCSNDKFTNT 730

Query: 225 LL--AVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW 281
            L       S     GH     +P +    S +  YLA  S DG + + +V     N W
Sbjct: 731 RLWNPNKKTSQNTMFGHM----EPVNHCCFSPNDLYLATSSSDGSLKLFEVSSA--NEW 783

Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase 9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.

Danio rerio (taxid: 7955)

>sp|Q99M63|SMU1_RAT WD40 repeat-containing protein SMU1 OS=Rattus norvegicus GN=Smu1 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 13/178 (7%)

Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
           +C  FS DG     G VDG + + ++ + +I  D + +A  + + MD       FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277

Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227
            LAT + DG  ++WK + G       R   + +    FSKD ++      +       + 
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ-----ILSASFDQTIR 332

Query: 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285
           ++ + +   +   R      +  + + DG Y+   S DG + + ++K  E ++  K L
Sbjct: 333 IHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKSL 390

Rattus norvegicus (taxid: 10116)

>sp|Q6NRT3|SMU1_XENLA WD40 repeat-containing protein SMU1 OS=Xenopus laevis GN=smu1 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 13/178 (7%)

Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
           +C  FS DG     G VDG + + ++ + +I  D + +A  + + MD       FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277

Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227
            LAT + DG  ++WK + G       R   + +    FSKD ++       Q      + 
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQILSASFDQ-----TIR 332

Query: 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285
           ++ + +   +   R      +  + + DG Y+   S DG + + ++K  E ++  K L
Sbjct: 333 IHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKSL 390

Xenopus laevis (taxid: 8355)

>sp|Q3UKJ7|SMU1_MOUSE WD40 repeat-containing protein SMU1 OS=Mus musculus GN=Smu1 PE=2 SV=2

 Score = 55.5 bits (132), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 13/178 (7%)

Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
           +C  FS DG     G VDG + + ++ + +I  D + +A  + + MD       FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277

Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227
            LAT + DG  ++WK + G       R   + +    FSKD ++      +       + 
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ-----ILSASFDQTIR 332

Query: 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285
           ++ + +   +   R      +  + + DG Y+   S DG + + ++K  E ++  K L
Sbjct: 333 IHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKSL 390

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
356535527	394	PREDICTED: SEC12-like protein 1-like [Gl	0.982	0.977	0.744	1e-174
225448865	391	PREDICTED: SEC12-like protein 1-like [Vi	0.989	0.992	0.748	1e-174
356576347	394	PREDICTED: SEC12-like protein 1-like [Gl	0.982	0.977	0.734	1e-173
224113177	385	predicted protein [Populus trichocarpa]	0.971	0.989	0.730	1e-168
388521319	390	unknown [Lotus japonicus]	0.941	0.946	0.725	1e-164
217073440	392	unknown [Medicago truncatula]	0.977	0.977	0.690	1e-160
449441826	393	PREDICTED: SEC12-like protein 1-like [Cu	0.982	0.979	0.672	1e-157
296090365	352	unnamed protein product [Vitis vinifera]	0.880	0.980	0.760	1e-155
449522724	393	PREDICTED: LOW QUALITY PROTEIN: SEC12-li	0.982	0.979	0.667	1e-155
297819930	397	hypothetical protein ARALYDRAFT_485583 [	0.969	0.957	0.625	1e-143

>gi|356535527|ref|XP_003536296.1| PREDICTED: SEC12-like protein 1-like [Glycine max]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 289/388 (74%), Positives = 338/388 (87%), Gaps = 3/388 (0%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G VTCGSWI+RPEN+NLVVLG+S R SS PS+LEIFSFDPKTTS+ TSPL TYV +  EG
Sbjct: 10  GPVTCGSWIRRPENLNLVVLGRSRRGSSCPSLLEIFSFDPKTTSLSTSPLTTYVLEAEEG 69

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           DP+ I V+PSGDDFVC+ +NG CKLFE+YG  T++ LLAK++ PLQ  GPQKC+SFSVDG
Sbjct: 70  DPVAITVHPSGDDFVCALSNGSCKLFELYGRETNMKLLAKELAPLQGIGPQKCISFSVDG 129

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+FAAGG+DGHLRIM WPS+R+ILDEP+AH SV DMDFSLDSEFLA+TSTDGSARIWKTE
Sbjct: 130 SKFAAGGMDGHLRIMEWPSMRVILDEPRAHNSVQDMDFSLDSEFLASTSTDGSARIWKTE 189

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV    L+RNSDEKIELCRFSKDGTKPFLFC+VQ+GD ++ AVYDISTWNKIGHKRL+R
Sbjct: 190 DGVPLNTLSRNSDEKIELCRFSKDGTKPFLFCSVQKGDTSVTAVYDISTWNKIGHKRLIR 249

Query: 245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL 304
           K ASV+SIS DGKYL++GSKDGDICVV+VKKM+I H+SKRLHLGT+IA +EFCP +RVVL
Sbjct: 250 KSASVMSISNDGKYLSLGSKDGDICVVEVKKMQIYHYSKRLHLGTNIASLEFCPGERVVL 309

Query: 305 TASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVARNQHG 364
           T S EWGA++TKLTVP DWKEWQIY +LL LFLASAV FYIFFENSDSFWNFP+ ++Q  
Sbjct: 310 TTSVEWGALVTKLTVPKDWKEWQIYLVLLGLFLASAVAFYIFFENSDSFWNFPMGKDQPA 369

Query: 365 GPKIESILRDPQSSDDQNMWNAFDPLDM 392
            P+ + +L+DPQS DDQN+W    P+DM
Sbjct: 370 RPRFKPVLKDPQSYDDQNIWG---PVDM 394

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448865|ref|XP_002262948.1| PREDICTED: SEC12-like protein 1-like [Vitis vinifera]

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 292/390 (74%), Positives = 334/390 (85%), Gaps = 2/390 (0%)

Query: 3   GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES 62
           GGG+V C +WI+RPEN+NLV++ +S R +SSP+VLEIFSFDP TTS+ +SPL TYV +E 
Sbjct: 4   GGGSVACAAWIRRPENLNLVIICRSGRRNSSPAVLEIFSFDPMTTSLSSSPLATYVLEE- 62

Query: 63  EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV 122
            GDPM +AV+PSGD+ VCSTT G CKLFE+Y    +I LLAKK+  L+  GPQKCL+FSV
Sbjct: 63  -GDPMAVAVHPSGDELVCSTTTGDCKLFELYAQEGNIKLLAKKLNALEGVGPQKCLAFSV 121

Query: 123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK 182
           +GSRFA GGVDGHLRI+ WPS++IILDEP+AH S  DMDFSLD+EFLA+TSTDGSARIWK
Sbjct: 122 EGSRFATGGVDGHLRILEWPSMQIILDEPRAHNSFRDMDFSLDTEFLASTSTDGSARIWK 181

Query: 183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242
             DGV  T LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA+ AV+DISTWNKIGHKRL
Sbjct: 182 INDGVPLTTLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAVTAVWDISTWNKIGHKRL 241

Query: 243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV 302
           L+KPASV+S+SLDGKYLA+GSKDGD+CVV+VKKMEI HWSKRLHLGT IA +EFCP +RV
Sbjct: 242 LKKPASVMSMSLDGKYLALGSKDGDVCVVEVKKMEICHWSKRLHLGTCIAALEFCPRERV 301

Query: 303 VLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVARNQ 362
           VLT S EWGA++TKL V ADWKEWQIY LLL LFLASAV FYIFFENSDSFWNFP+ RNQ
Sbjct: 302 VLTTSVEWGAVVTKLNVAADWKEWQIYMLLLGLFLASAVAFYIFFENSDSFWNFPLGRNQ 361

Query: 363 HGGPKIESILRDPQSSDDQNMWNAFDPLDM 392
              P  +SIL DPQSSDDQN W AF PLD+
Sbjct: 362 PAKPFTKSILGDPQSSDDQNTWGAFGPLDL 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576347|ref|XP_003556294.1| PREDICTED: SEC12-like protein 1-like [Glycine max]

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 285/388 (73%), Positives = 338/388 (87%), Gaps = 3/388 (0%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G VTCGSWI+RPEN+NLVVLG+S R +S PS+LEIFSFDPKTTS+ T PL TYV +  EG
Sbjct: 10  GPVTCGSWIRRPENLNLVVLGRSRRGNSCPSLLEIFSFDPKTTSLSTCPLTTYVLEAEEG 69

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           DP+ IAV+PSGDDFVC+ +NG CKLFE+YG  T++ LLAK++ PLQ  GPQKC++FSVDG
Sbjct: 70  DPVAIAVHPSGDDFVCALSNGSCKLFELYGRETNMKLLAKELAPLQGIGPQKCIAFSVDG 129

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+FAAGG+DGHLRIM WPS+R+ILDEP+AHKSV DMDFSLDSEFLA+TSTDGSARIWK E
Sbjct: 130 SKFAAGGLDGHLRIMEWPSMRVILDEPRAHKSVRDMDFSLDSEFLASTSTDGSARIWKIE 189

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV  T L+RNSDEKIELCRFS DGTKPFLFC+VQ+GD ++ AVY+ISTWNKIGHKRL+R
Sbjct: 190 DGVPLTTLSRNSDEKIELCRFSMDGTKPFLFCSVQKGDTSVTAVYEISTWNKIGHKRLIR 249

Query: 245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL 304
           K ASV+SIS DGKYL++GSKDGDICVV+VKKM+I H+SKRLHLGT+IA +EFCP +RV+L
Sbjct: 250 KSASVMSISHDGKYLSLGSKDGDICVVEVKKMQIYHYSKRLHLGTNIAYLEFCPGERVLL 309

Query: 305 TASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVARNQHG 364
           T S EWGA++TKLTVP DWKEWQIY +LL LFLASAV FYIFFENSDSFWNFP+ ++Q  
Sbjct: 310 TTSVEWGALVTKLTVPKDWKEWQIYLVLLGLFLASAVAFYIFFENSDSFWNFPMGKDQPA 369

Query: 365 GPKIESILRDPQSSDDQNMWNAFDPLDM 392
            P+ + +L+DPQS DDQN+W    P+DM
Sbjct: 370 RPRFKPVLKDPQSYDDQNIWG---PVDM 394

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113177|ref|XP_002316416.1| predicted protein [Populus trichocarpa] gi|222865456|gb|EEF02587.1| predicted protein [Populus trichocarpa]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 285/390 (73%), Positives = 333/390 (85%), Gaps = 9/390 (2%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSS--RASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES 62
           GTVTCGSWI+RPEN+NLVVLGKSS  R S+S SVLEIFSFDP+T S+  SP VTYVF+E+
Sbjct: 3   GTVTCGSWIRRPENLNLVVLGKSSKKRESASRSVLEIFSFDPQTASLSNSPQVTYVFEET 62

Query: 63  EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV 122
           EG+P+TIAV+P+GDDFVCST+ GGCKL E+ G  T++ LLAK++PPLQD GPQ C++FSV
Sbjct: 63  EGEPVTIAVHPNGDDFVCSTSKGGCKLLELSGQETNLKLLAKELPPLQDVGPQNCMAFSV 122

Query: 123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK 182
           DGS+FA GGV+G +RI+ WPSLRIILDE KAH SV DMDFSLDSEFLA+TSTDGSARIWK
Sbjct: 123 DGSKFATGGVEGRVRILKWPSLRIILDEAKAHNSVRDMDFSLDSEFLASTSTDGSARIWK 182

Query: 183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242
            EDG A   LTRNSDEKIELCRFSKDGTKPFLFC VQ+GDKA+ +VYDISTW KIG+KRL
Sbjct: 183 AEDGSAVATLTRNSDEKIELCRFSKDGTKPFLFCAVQKGDKAVTSVYDISTWKKIGYKRL 242

Query: 243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV 302
           LRKPA+++SISLDGKYLA+GSKDGD+CV +VK ME++H S+RLHLGT I  +EFCP+QRV
Sbjct: 243 LRKPAAIMSISLDGKYLALGSKDGDVCVAEVKTMEVSHLSRRLHLGTCITSLEFCPSQRV 302

Query: 303 VLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVARNQ 362
           VLT S EWGA++TKL VPADWKEWQIY +L+ LFLASAV FYIFF+NSDSFW FP+ R+Q
Sbjct: 303 VLTTSNEWGAVVTKLNVPADWKEWQIYLVLVGLFLASAVAFYIFFQNSDSFWKFPLGRDQ 362

Query: 363 HGGPKIESILRDPQSSDDQNMWNAFDPLDM 392
            G PK E  + DPQ S+D     AF PLDM
Sbjct: 363 PGRPKFE--ILDPQYSED-----AFGPLDM 385

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521319|gb|AFK48721.1| unknown [Lotus japonicus]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 270/372 (72%), Positives = 322/372 (86%), Gaps = 3/372 (0%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G VTCGSWI+RPENVNL VLG+S R  S PS+L+IFSFDP TTS++TSPL T+V +  EG
Sbjct: 10  GPVTCGSWIRRPENVNLAVLGRSRRGDSCPSLLQIFSFDPNTTSLFTSPLATFVLEAEEG 69

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           DP+ IAV+PSGDDF+CS +NG CKLFE+YG   ++ L+AK++ PLQ  GPQKC++FSVDG
Sbjct: 70  DPIAIAVHPSGDDFLCSLSNGSCKLFELYGHDKNMKLMAKELAPLQGIGPQKCITFSVDG 129

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+FAAG +DGHLRIM WPS+R+ILDEPKAHKSV DMDFSLDSEFLA+TSTDGSAR WK E
Sbjct: 130 SKFAAGALDGHLRIMEWPSMRMILDEPKAHKSVRDMDFSLDSEFLASTSTDGSARTWKIE 189

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV  T L+RNSDEKIELCRFSKDGTKPFLF +VQ+GDK+  AV+D+STWNKIGHKRLLR
Sbjct: 190 DGVPLTTLSRNSDEKIELCRFSKDGTKPFLFGSVQKGDKSFTAVWDMSTWNKIGHKRLLR 249

Query: 245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL 304
           K ASV+SIS DGKYL+MGSKDGDICVV++KKM+I+H+SKRLHLGT+IA +EFCPT+RVVL
Sbjct: 250 KSASVMSISHDGKYLSMGSKDGDICVVEIKKMQIHHYSKRLHLGTNIATLEFCPTERVVL 309

Query: 305 TASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVARNQHG 364
           T S EWGA +TKL VP DWKEWQIY +L+ LF+ASA+VFY+FFENSDSFWNFP+ +NQ  
Sbjct: 310 TTSIEWGAQVTKLNVPKDWKEWQIYVVLVGLFIASAIVFYMFFENSDSFWNFPMGKNQPA 369

Query: 365 GPKIESILRDPQ 376
            P+   ++RDP 
Sbjct: 370 RPR---LIRDPN 378

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073440|gb|ACJ85079.1| unknown [Medicago truncatula]

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 268/388 (69%), Positives = 324/388 (83%), Gaps = 5/388 (1%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G VTCGSWI+RPEN+NLVVLG+S R +S P++L+IFSFDP T S+ TSPL  +V +  EG
Sbjct: 10  GPVTCGSWIRRPENLNLVVLGRSKRGNSCPALLQIFSFDPITVSLSTSPLTNFVLEAEEG 69

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           D + IAV+PSGDDF+CS +NG CKLFE+YG   ++ LLAK++ PLQ    Q C++FSVDG
Sbjct: 70  DLVAIAVHPSGDDFMCSLSNGSCKLFELYGHEANMKLLAKELTPLQGICSQTCITFSVDG 129

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+FAAGG DGHLRIM WPS+RIILDEP+AHKSV DMDFSLDSEFLA+TSTDGSARIWK E
Sbjct: 130 SKFAAGGSDGHLRIMEWPSMRIILDEPRAHKSVRDMDFSLDSEFLASTSTDGSARIWKVE 189

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV  T L+RNSDEKIELCRFSK GTKPFLF  VQ+GDK+L AV+D+S+WNKIGHKRLLR
Sbjct: 190 DGVPVTTLSRNSDEKIELCRFSKGGTKPFLFGAVQKGDKSLTAVWDMSSWNKIGHKRLLR 249

Query: 245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL 304
           K AS +++S DGKYL++ SKDGDICVV+VKKM+I+H+SKRLHLGT+IA ++FCP++RVVL
Sbjct: 250 KSASAMAVSHDGKYLSLASKDGDICVVEVKKMQIHHYSKRLHLGTTIATLDFCPSERVVL 309

Query: 305 TASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVARNQHG 364
           T S EWGA++TKL VP DWKEWQIY +LL LFL SAV FYIFFENSDSFW FP+ +NQ  
Sbjct: 310 TTSVEWGALVTKLNVPKDWKEWQIYLVLLGLFLVSAVAFYIFFENSDSFWGFPMGKNQPA 369

Query: 365 GPKIESILRDPQSSDDQNMWNAFDPLDM 392
            P+ + ++RDPQS DDQ     + P+DM
Sbjct: 370 RPRFKPMMRDPQSFDDQ-----WGPVDM 392

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441826|ref|XP_004138683.1| PREDICTED: SEC12-like protein 1-like [Cucumis sativus]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 261/388 (67%), Positives = 322/388 (82%), Gaps = 3/388 (0%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G ++CGSWI+RPENVNL ++G+S    SSPS LEIFSFDPK TS+ +SPL  + F+E +G
Sbjct: 9   GPLSCGSWIRRPENVNLALIGRSRPPDSSPSTLEIFSFDPKVTSLSSSPLTEFAFEECDG 68

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           D +++ V+PSGD+ VCSTT GGCKLFE+ G   ++ LL K++P L+D GPQ CL+FSVDG
Sbjct: 69  DLVSVTVHPSGDEIVCSTTRGGCKLFELCGQELNVKLLIKELPSLKDVGPQSCLTFSVDG 128

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+ A GGVDGHLRI  WPSLR ILDEP A KSV DMDFSLDSEFLA+TS+DGSAR+WKT+
Sbjct: 129 SKLATGGVDGHLRIFEWPSLRPILDEPNAQKSVRDMDFSLDSEFLASTSSDGSARVWKTD 188

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV  T LTRN+DEKIELCRFSKDGTKPFLFCTVQ+G+KA+ AV+DIS W +IG+KRLLR
Sbjct: 189 DGVPITTLTRNTDEKIELCRFSKDGTKPFLFCTVQKGEKAVTAVWDISNWKRIGYKRLLR 248

Query: 245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL 304
           KPA ++SIS DGKYLA+GSKDGD+CV +VKKME++H SKRLHLGT I  ++FCP++RV+L
Sbjct: 249 KPACIMSISRDGKYLALGSKDGDVCVAEVKKMEVSHMSKRLHLGTPIKTLDFCPSERVIL 308

Query: 305 TASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVARNQHG 364
           T+S EWGA++TKL VPADWKEWQIY LL++LFLASAVVFYIF+ENSDSFW FP+ R+Q  
Sbjct: 309 TSSVEWGALVTKLNVPADWKEWQIYVLLISLFLASAVVFYIFYENSDSFWQFPLGRDQPA 368

Query: 365 GPKIESILRDPQSSDDQNMWNAFDPLDM 392
            P+ +S + D QS   Q+  + F P+DM
Sbjct: 369 RPRFDSFVGDSQS---QSADDPFGPVDM 393

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090365|emb|CBI40184.3| unnamed protein product [Vitis vinifera]

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 264/347 (76%), Positives = 297/347 (85%), Gaps = 2/347 (0%)

Query: 46  TTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKK 105
           TTS+ +SPL TYV +E  GDPM +AV+PSGD+ VCSTT G CKLFE+Y    +I LLAKK
Sbjct: 2   TTSLSSSPLATYVLEE--GDPMAVAVHPSGDELVCSTTTGDCKLFELYAQEGNIKLLAKK 59

Query: 106 MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD 165
           +  L+  GPQKCL+FSV+GSRFA GGVDGHLRI+ WPS++IILDEP+AH S  DMDFSLD
Sbjct: 60  LNALEGVGPQKCLAFSVEGSRFATGGVDGHLRILEWPSMQIILDEPRAHNSFRDMDFSLD 119

Query: 166 SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225
           +EFLA+TSTDGSARIWK  DGV  T LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA+
Sbjct: 120 TEFLASTSTDGSARIWKINDGVPLTTLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAV 179

Query: 226 LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285
            AV+DISTWNKIGHKRLL+KPASV+S+SLDGKYLA+GSKDGD+CVV+VKKMEI HWSKRL
Sbjct: 180 TAVWDISTWNKIGHKRLLKKPASVMSMSLDGKYLALGSKDGDVCVVEVKKMEICHWSKRL 239

Query: 286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYI 345
           HLGT IA +EFCP +RVVLT S EWGA++TKL V ADWKEWQIY LLL LFLASAV FYI
Sbjct: 240 HLGTCIAALEFCPRERVVLTTSVEWGAVVTKLNVAADWKEWQIYMLLLGLFLASAVAFYI 299

Query: 346 FFENSDSFWNFPVARNQHGGPKIESILRDPQSSDDQNMWNAFDPLDM 392
           FFENSDSFWNFP+ RNQ   P  +SIL DPQSSDDQN W AF PLD+
Sbjct: 300 FFENSDSFWNFPLGRNQPAKPFTKSILGDPQSSDDQNTWGAFGPLDL 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522724|ref|XP_004168376.1| PREDICTED: LOW QUALITY PROTEIN: SEC12-like protein 1-like [Cucumis sativus]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 259/388 (66%), Positives = 320/388 (82%), Gaps = 3/388 (0%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G ++CGSWI+RPENVNL ++G+S    SSPS LEIFSFDPK TS+ +SPL  + F+E +G
Sbjct: 9   GPLSCGSWIRRPENVNLALIGRSRPPDSSPSTLEIFSFDPKVTSLSSSPLTEFAFEECDG 68

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           D +++ V+PSGD+ VCSTT GGCKLFE+ G   ++ LL K++P L+D GPQ CL+FSVDG
Sbjct: 69  DLVSVTVHPSGDEIVCSTTRGGCKLFELCGQELNVKLLIKELPSLKDVGPQSCLTFSVDG 128

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+ A GGVDGHLRI  WPSLR ILDEP A KSV DMDFSLDSEFLA+TS+DGSAR+WKT+
Sbjct: 129 SKLATGGVDGHLRIFEWPSLRPILDEPNAQKSVRDMDFSLDSEFLASTSSDGSARVWKTD 188

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV  T LTR+S  KIELCRFSKDGTKPFLFCTVQ+G+KA+ AV+DIS W +IG+KRLLR
Sbjct: 189 DGVPITTLTRSSGXKIELCRFSKDGTKPFLFCTVQKGEKAVTAVWDISNWKRIGYKRLLR 248

Query: 245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL 304
           KPA ++SIS DGKYLA+GSKDGD+CV +VKKME++H SKRLHLGT I  ++FCP++RV+L
Sbjct: 249 KPACIMSISRDGKYLALGSKDGDVCVAEVKKMEVSHMSKRLHLGTPIKTLDFCPSERVIL 308

Query: 305 TASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVARNQHG 364
           T+S EWGA++TKL VPADWKEWQIY LL++LFLASAVVFYIF+ENSDSFW FP+ R+Q  
Sbjct: 309 TSSVEWGALVTKLNVPADWKEWQIYVLLISLFLASAVVFYIFYENSDSFWQFPLGRDQPA 368

Query: 365 GPKIESILRDPQSSDDQNMWNAFDPLDM 392
            P+ +S + D QS   Q+  + F P+DM
Sbjct: 369 RPRFDSFVGDSQS---QSADDPFGPVDM 393

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819930|ref|XP_002877848.1| hypothetical protein ARALYDRAFT_485583 [Arabidopsis lyrata subsp. lyrata] gi|297323686|gb|EFH54107.1| hypothetical protein ARALYDRAFT_485583 [Arabidopsis lyrata subsp. lyrata]

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 241/385 (62%), Positives = 301/385 (78%), Gaps = 5/385 (1%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSR----ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD 60
           G V CGSWI+RP+ VN V++ K+S+    + SSP++L IFSFDP T S+ +SPL T+   
Sbjct: 11  GHVVCGSWIRRPKKVNWVLIAKASKRRGSSVSSPALLNIFSFDPVTASLSSSPLATHTLK 70

Query: 61  ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF 120
           ES+GDP+T++V+P+GD FVCST+ GGCK FE+ GGAT I +LAK++ PLQ+AG QKC++F
Sbjct: 71  ESDGDPVTVSVHPAGDYFVCSTSKGGCKSFEIVGGATGITILAKELLPLQNAGLQKCMAF 130

Query: 121 SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI 180
           S DGS+ AAGG+DG LRIM WP+L +ILDEPKAHKS+ DMDFSLDSEFLATTSTDGSARI
Sbjct: 131 SFDGSKLAAGGLDGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARI 190

Query: 181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240
           WK EDG   + L R+ DE IELCRFSKDGTKPFLFC  QRGD  L+ VYDISTW K+G K
Sbjct: 191 WKAEDGFPLSTLERSGDENIELCRFSKDGTKPFLFCAAQRGDTPLVNVYDISTWKKLGFK 250

Query: 241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300
           +L RK AS +++SLDGKY+A+G KDGD+ V +VK MEI H+SKRLHLG SIA +EFCP++
Sbjct: 251 KLSRKTASTMAVSLDGKYIALGGKDGDVSVAEVKTMEIYHYSKRLHLGQSIASLEFCPSE 310

Query: 301 RVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVAR 360
           RV+LT S EWG M+TKL+VP +W+EWQIY+LL  LF+AS +  Y+FFENSDSFW  P+ +
Sbjct: 311 RVMLTTSSEWGEMVTKLSVPKEWREWQIYALLFCLFMASVIAAYVFFENSDSFWQLPMGK 370

Query: 361 NQHGGPKIESILRDPQSSDDQNMWN 385
            Q   PKI         S+D + WN
Sbjct: 371 VQK-RPKISLFGGSSTPSEDHSRWN 394

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
TAIR|locus:2083850	398	PHF1 "AT3G52190" [Arabidopsis	0.966	0.952	0.617	1.5e-129
TAIR|locus:2159697	383	AT5G50550 "AT5G50550" [Arabido	0.724	0.741	0.316	1.5e-33
TAIR|locus:2832497	383	AT5G50650 "AT5G50650" [Arabido	0.724	0.741	0.316	1.5e-33
TAIR|locus:2049582	393	STL2P "AT2G01470" [Arabidopsis	0.734	0.732	0.309	2.1e-29
MGI|MGI:1355326	417	Preb "prolactin regulatory ele	0.461	0.434	0.28	7.9e-09
RGD|61929	417	Preb "prolactin regulatory ele	0.459	0.431	0.283	1.3e-08
UNIPROTKB|E2RBH1	418	PREB "Uncharacterized protein"	0.494	0.464	0.286	2.9e-08
UNIPROTKB|F1SED4	415	PREB "Uncharacterized protein"	0.454	0.428	0.280	2.2e-07
TAIR|locus:2012971	407	AT1G71840 "AT1G71840" [Arabido	0.642	0.619	0.267	2.8e-07
UNIPROTKB|E1BL12	418	PREB "Uncharacterized protein"	0.454	0.425	0.285	3e-07

TAIR|locus:2083850 PHF1 "AT3G52190" [Arabidopsis thaliana (taxid:3702)]

 Score = 1271 (452.5 bits), Expect = 1.5e-129, P = 1.5e-129
 Identities = 239/387 (61%), Positives = 294/387 (75%)

Query:     5 GTVTCGSWIKRPENVNLVVLGKSS--RASS--SPSVLEIFSFDPKTTSVYTSPLVTYVFD 60
             G V CGSWI+RP+ VN V++ K+S  R SS  SP++L IFSFDP T S+ +SPL T+   
Sbjct:    11 GHVVCGSWIRRPKKVNWVLIAKASKRRGSSVSSPALLNIFSFDPITASLSSSPLATHTLK 70

Query:    61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF 120
             +S+GDP+ ++V+P GD FVCST+ GGCKLFE+ GGAT I +LAK++ PLQ+AG QKC++F
Sbjct:    71 DSDGDPVAVSVHPGGDYFVCSTSKGGCKLFELVGGATGITILAKELLPLQNAGLQKCMAF 130

Query:   121 SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI 180
             S DGS+ A GGVDG LRIM WP+L +ILDEPKAHKS+ DMDFSLDSEFLATTSTDGSARI
Sbjct:   131 SFDGSKLAVGGVDGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARI 190

Query:   181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240
             WK EDG   + L R+ DE IELCRFSKDGTKPFLFC  QRGD  ++ VYDISTW K+G K
Sbjct:   191 WKAEDGFPLSTLERSGDENIELCRFSKDGTKPFLFCAAQRGDTPMVNVYDISTWKKLGFK 250

Query:   241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300
             +L RK AS +++SLDGKY+A+G KDGD+ V +VK MEI H+SKRLHLG SIA +EFCP++
Sbjct:   251 KLSRKTASTMAVSLDGKYIALGGKDGDVSVAEVKTMEIYHYSKRLHLGQSIASLEFCPSE 310

Query:   301 RVVLTASKEWGAMITKLTVPADWKEWQIYXXXXXXXXXXXXXXYIFFENSDSFWNFPVAR 360
             RV+LT S EWG M+TKLTVP +WKEWQIY              Y+FFENSDSFW  P+ +
Sbjct:   311 RVMLTTSSEWGEMVTKLTVPKEWKEWQIYALLFCLFMASVIAAYVFFENSDSFWKLPMGK 370

Query:   361 NQHGGPKIESILRDPQS--SDDQNMWN 385
             +Q   PKI S+     S  S+D + WN
Sbjct:   371 DQKR-PKI-SLFGGSSSTPSEDHSRWN 395

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006817 "phosphate ion transport" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA;IMP

GO:0016036 "cellular response to phosphate starvation" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2159697 AT5G50550 "AT5G50550" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 94/297 (31%), Positives = 146/297 (49%)

Query:    25 GKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84
             G     S  P+V+ I   D  T S+   P+   V       P  +A++P     +C+  N
Sbjct:    56 GGGEGRSGIPNVILICRVDLHTNSLSEQPIGRRVIGTDL--PYRMAIHPRQGGLICALPN 113

Query:    85 GGCKLFEVYGGATDINL--LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142
               C+LF+      D N     K +  L+D G Q  LSF+ DG+  A G  DG LR+  WP
Sbjct:   114 S-CRLFDWENIIEDDNEEESEKVVKELKDVGQQLSLSFNQDGTVLATGAEDGTLRVFEWP 172

Query:   143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL 202
             S++ +L+E K H SV  + FS   +FL +       R+W      A   L++  DE    
Sbjct:   173 SMKTLLNESKTHASVKSLTFSESGKFLVSLGAP-LCRVWDVNASAAIASLSKEKDEMFAS 231

Query:   203 CRFSKD--GTKP-FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA-SVLSISLDGKY 258
             CRFS D  G++  ++    QRG   +   +D ++W +   K + R  + S  ++S DGK 
Sbjct:   232 CRFSVDNSGSEVLYVAANTQRGGSII--TWDTTSWRRRSSKLIKRNNSISAFNVSADGKL 289

Query:   259 LAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMIT 315
             LA+G+ +GD+ ++D  KM+ N   K+ HLG   AL  F P  R +++ S +  A +T
Sbjct:   290 LAVGTLEGDVLIIDSTKMQTNQIVKKAHLGLVTALT-FSPDSRCLVSVSFDSRARLT 345

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2832497 AT5G50650 "AT5G50650" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 94/297 (31%), Positives = 146/297 (49%)

Query:    25 GKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84
             G     S  P+V+ I   D  T S+   P+   V       P  +A++P     +C+  N
Sbjct:    56 GGGEGRSGIPNVILICRVDLHTNSLSEQPIGRRVIGTDL--PYRMAIHPRQGGLICALPN 113

Query:    85 GGCKLFEVYGGATDINL--LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142
               C+LF+      D N     K +  L+D G Q  LSF+ DG+  A G  DG LR+  WP
Sbjct:   114 S-CRLFDWENIIEDDNEEESEKVVKELKDVGQQLSLSFNQDGTVLATGAEDGTLRVFEWP 172

Query:   143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL 202
             S++ +L+E K H SV  + FS   +FL +       R+W      A   L++  DE    
Sbjct:   173 SMKTLLNESKTHASVKSLTFSESGKFLVSLGAP-LCRVWDVNASAAIASLSKEKDEMFAS 231

Query:   203 CRFSKD--GTKP-FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA-SVLSISLDGKY 258
             CRFS D  G++  ++    QRG   +   +D ++W +   K + R  + S  ++S DGK 
Sbjct:   232 CRFSVDNSGSEVLYVAANTQRGGSII--TWDTTSWRRRSSKLIKRNNSISAFNVSADGKL 289

Query:   259 LAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMIT 315
             LA+G+ +GD+ ++D  KM+ N   K+ HLG   AL  F P  R +++ S +  A +T
Sbjct:   290 LAVGTLEGDVLIIDSTKMQTNQIVKKAHLGLVTALT-FSPDSRCLVSVSFDSRARLT 345

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2049582 STL2P "AT2G01470" [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 95/307 (30%), Positives = 145/307 (47%)

Query:    25 GKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84
             G   R+  S +V+ I   D  T S+   PL   V       P  +AV+P     +C+  N
Sbjct:    66 GGEGRSGIS-NVILICRVDLNTNSLSEQPLGRLVVGSDL--PYRMAVHPREGGLICALPN 122

Query:    85 GGCKLF--EVYGGATDINLLAKK---MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139
               CKLF  E      D N   +    +  L+D G Q  L+F+ +GS  AAG  DG LR+ 
Sbjct:   123 S-CKLFHWEDIMSRED-NQAGESEEVIKELRDVGQQLALAFNPEGSVLAAGAEDGTLRVF 180

Query:   140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSA-RIWKTEDGVAWTFLTRNSDE 198
              WPS+  +L+E +AH SV  + FS   +FL   S  G   R+W      A   L++  DE
Sbjct:   181 KWPSMNTLLNESQAHSSVKCLTFSESGQFLV--SLGGPVCRVWDVNASAAVASLSKEKDE 238

Query:   199 KIELCRFSKD--GTKP-FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD 255
                 CRFS D  G +  ++    +RG   +    D   W +   K + +   S  ++S D
Sbjct:   239 MFASCRFSVDSAGNEVLYIAANTERGGSIITC--DTKLWKRKWSKPIKKNSISAFNVSAD 296

Query:   256 GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMIT 315
             GK LA+G+ +GD+ +++  +M+     K+ HLG   AL  F P  R +++ S +  A +T
Sbjct:   297 GKLLAIGTLEGDVLILESTRMQTIQVVKKAHLGLVTALT-FSPDSRGLVSVSFDSRARLT 355

Query:   316 KLTVPAD 322
              +    D
Sbjct:   356 MIEQKGD 362

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA;TAS

GO:0043090 "amino acid import" evidence=RCA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

MGI|MGI:1355326 Preb "prolactin regulatory element binding" [Mus musculus (taxid:10090)]

 Score = 160 (61.4 bits), Expect = 7.9e-09, P = 7.9e-09
 Identities = 56/200 (28%), Positives = 90/200 (45%)

Query:   115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-DMDFSLDSEFLATTS 173
             QK + F+ D +  A GG DGH+R+   PSL  +L E KAH+  + D+    D + L T  
Sbjct:   157 QKVVCFNHDNTLLATGGTDGHVRVWKVPSLEKVL-EFKAHEGEIGDLTLGPDGK-LVTVG 214

Query:   174 TDGSARIWKTEDGVA---WTF---LTRNSDEKIELCRFSK--DGTKPFLFCTVQRGDKAL 225
              D  A +W+ +  V    W      + N+  + + CRF +  D        TVQ   K L
Sbjct:   215 WDFKASVWQKDQLVTQLQWQENGPASSNTPYRYQACRFGQVPDQLGGLRLFTVQIPHKRL 274

Query:   226 -------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI 278
                    L  +D ST+  +  +    +  S LS+S  G +L +G+  G + +     ++ 
Sbjct:   275 RQPPPCYLTAWDSSTFLPLRTRSCGHEVISCLSVSDSGTFLGLGTVTGSVAIYIAFSLQR 334

Query:   279 NHWSKRLHLGTSIALVEFCP 298
              ++ K  H G  +  V F P
Sbjct:   335 LYYVKEAH-GIVVTDVTFLP 353

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO;ISS

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

RGD|61929 Preb "prolactin regulatory element binding" [Rattus norvegicus (taxid:10116)]

 Score = 158 (60.7 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 57/201 (28%), Positives = 93/201 (46%)

Query:   115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-DMDFSLDSEFLATTS 173
             QK + F+ D +  A GG DGH+R+   PSL  +L E KAH+  + D+    D + L T  
Sbjct:   157 QKVVCFNHDNTLLATGGSDGHVRVWKVPSLEKVL-EFKAHEGEIGDLALGPDGK-LVTVG 214

Query:   174 TDGSARIWKTEDGVA---WTF---LTRNSDEKIELCRFSKDGTKPF---LFCTVQRGDKA 224
              D  A +W+ +  V    W      + N+  + + CRF +   +P    LF TVQ   K 
Sbjct:   215 WDFKASVWQKDQLVTQLQWQENGPTSSNTPYRYQACRFGQVPDQPGGLRLF-TVQIPHKR 273

Query:   225 L-------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277
             L       L  +D ST+  +  +    +  S L++S  G +L +G+  G + +     ++
Sbjct:   274 LRQPPPCYLTAWDSSTFLPLQTRSCGHEVISCLTVSESGTFLGLGTVTGSVAIYIAFSLQ 333

Query:   278 INHWSKRLHLGTSIALVEFCP 298
               ++ K  H G  +  V F P
Sbjct:   334 RLYYVKEAH-GIVVTDVTFLP 353

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|E2RBH1 PREB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 155 (59.6 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 64/223 (28%), Positives = 102/223 (45%)

Query:    99 INLLAKKMPPLQ-DAGP---QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH 154
             I L  + +  +Q D  P   QK + F+ D +  A GG DG++RI   PSL  +L E +AH
Sbjct:   138 IELSVENLKAVQTDFSPDPFQKVVCFNHDNTLLATGGTDGYVRIWKVPSLEKVL-EFRAH 196

Query:   155 KSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVA---W-----TFLTRNSDEKIELCRF 205
             +  ++ D +L  +  L T   D  A +W+ +  V    W     TF   N+  + + CRF
Sbjct:   197 EGEIE-DLALGPDGKLVTVGWDLKASVWQKDQLVTQLHWQENGPTF--SNTPYRYQACRF 253

Query:   206 SKDGTKPF---LFCTVQRGDKAL-------LAVYDISTWNKIGHKRLLRKPASVLSISLD 255
                  +P    LF TVQ   K L       L  +D ST+  +  K    +  S LS+S  
Sbjct:   254 GHVPDQPTRLRLF-TVQIPHKRLRQPPPCYLTAWDGSTFLPLRTKSCGHEVISCLSVSES 312

Query:   256 GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298
             G +L +G+  G + +     ++  ++ +  H G  +  V F P
Sbjct:   313 GTFLGLGTVTGSVAIYIAFSLQCLYYVREAH-GIVVTDVAFLP 354

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|F1SED4 PREB "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 147 (56.8 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 57/203 (28%), Positives = 93/203 (45%)

Query:   115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-DMDFSLDSEFLATTS 173
             QK + F+ D +  A GG DG++R+   P+L  +L E +AH+  + D+    D + L T  
Sbjct:   158 QKVVRFNHDATLLATGGTDGYVRVWKVPTLEKVL-EFRAHEGEIEDLAVGPDGK-LVTVG 215

Query:   174 TDGSARIWKTEDGVA---W-----TFLTRNSDEKIELCRFSKDGTKPF---LFCTVQRGD 222
              D  A +W+ +  V    W     TF   N+  + + CRF     +P    LF TVQ   
Sbjct:   216 RDLKASVWQKDQLVTQLHWQENGPTF--SNTPYRYQACRFGPVPDQPAGLRLF-TVQIPH 272

Query:   223 KAL-------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275
             K L       L  +D ST+  +  +    +  S LS+S  G +L +G+  G + +     
Sbjct:   273 KRLRQPPPCYLTAWDGSTFLPLRTRSCGHEVISCLSVSESGTFLGLGTVTGSVAIYIAFS 332

Query:   276 MEINHWSKRLHLGTSIALVEFCP 298
             ++  ++ K  H G  +  V F P
Sbjct:   333 LQRLYYVKEAH-GIVVTDVAFLP 354

GO:0005783 "endoplasmic reticulum" evidence=IEA

TAIR|locus:2012971 AT1G71840 "AT1G71840" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 76/284 (26%), Positives = 123/284 (43%)

Query:    42 FDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINL 101
             FD    SV+T       F   +G+   +A +P+ D  + +T  G  K F    G  D   
Sbjct:    56 FDENDDSVHT-------FTGHKGELYALACSPT-DATLVATGGGDDKAFLWKIGNGD--- 104

Query:   102 LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS--LRIILDEPKAHKSVLD 159
              A ++P  +D+    CL+FS DG   A+GG+DG ++I    S  L+ +LD P A   +  
Sbjct:   105 WAAELPGHKDS--VSCLAFSYDGQLLASGGLDGVVQIFDASSGTLKCVLDGPGA--GIEW 160

Query:   160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219
             + +      +   S D S  +W   D  A+  +    +  +    F+ DG    L CT  
Sbjct:   161 VRWHPRGHIVLAGSEDCSLWMWNA-DKEAYLNMFSGHNLNVTCGDFTPDGK---LICT-- 214

Query:   220 RGDKALLAVYDISTWNKI----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275
               D A L V++  T   I    GH     +  + L I+ +      GSKDG + +V++  
Sbjct:   215 GSDDASLIVWNPKTCESIHIVKGHP-YHTEGLTCLDINSNSSLAISGSKDGSVHIVNIVT 273

Query:   276 MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319
              ++   S   H   S+  V+F P+   +  A+   G M  KL +
Sbjct:   274 GKVVS-SLNSHTD-SVECVKFSPSSATIPLAAT--GGMDKKLII 313

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|E1BL12 PREB "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 146 (56.5 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 58/203 (28%), Positives = 94/203 (46%)

Query:   115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEF-LATTS 173
             QK + F+ D +  A GG DG +R+   P+L  +L E KAH+  ++ D +L  +  L T  
Sbjct:   158 QKVVCFNHDNTLLATGGTDGCVRVWKVPTLEKVL-EFKAHEGEIE-DLALGPDGKLVTVG 215

Query:   174 TDGSARIWKTEDGVA---W-----TFLTRNSDEKIELCRFSKDGTKPF---LFCTVQRGD 222
              D  A +W+ +  V    W     TF   N+  + + CRF +   +P    LF TVQ   
Sbjct:   216 WDLKASVWQKDQLVTQLHWQENGPTF--SNTPYRYQACRFGQVPDQPAGLRLF-TVQIPH 272

Query:   223 KAL-------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275
             K L       L  +D ST+  +  +    +  S LS+S  G +L +G+  G + +     
Sbjct:   273 KRLRQPPPCYLTAWDGSTFLPLRTRPCGHEVISCLSVSESGTFLGLGTVTGSVAIYIAFS 332

Query:   276 MEINHWSKRLHLGTSIALVEFCP 298
             ++  ++ K  H G  +  V F P
Sbjct:   333 LQRLYYVKEAH-GIVVTDVAFLP 354

GO:0005783 "endoplasmic reticulum" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GYE0	PHF1_ARATH	No assigned EC number	0.6279	0.9668	0.9522	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	392
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.003
smart00320	40	smart00320, WD40, WD40 repeats	0.003

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 58.6 bits (140), Expect = 2e-09
 Identities = 44/198 (22%), Positives = 87/198 (43%), Gaps = 11/198 (5%)

Query: 116 KCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEF-LATTS 173
             L+FS DG   A+G  +DG +++    + + +         V  + FS D    +A+ S
Sbjct: 159 TSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218

Query: 174 TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233
           +DG+ R+W    G      T +      +  FS DG+   L           + ++D+ +
Sbjct: 219 SDGTIRLWDLSTG-KLLRSTLSGHSDSVVSSFSPDGS--LLASG---SSDGTIRLWDLRS 272

Query: 234 WNKIGHKRLLRKPASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI 291
            + +  + L    +SVLS++   DGK LA GS DG + + D++  ++            +
Sbjct: 273 SSSL-LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV 331

Query: 292 ALVEFCPTQRVVLTASKE 309
           + + F P   ++++   +
Sbjct: 332 SSLSFSPDGSLLVSGGSD 349

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 58.2 bits (139), Expect = 3e-09
 Identities = 66/285 (23%), Positives = 105/285 (36%), Gaps = 23/285 (8%)

Query: 32  SSPSVLEIFSFDPKTTSVY---TSPLVTYVFDESEGDPMTIAVNPSGDDFV-CSTTNGGC 87
              S+L   S    T  ++   T   +    +       ++A +P G      S+ +G  
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180

Query: 88  KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRI 146
           KL+++  G     L     P          L+FS DG    A    DG +R+    + ++
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVS-------SLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233

Query: 147 ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS 206
           +      H   +   FS D   LA+ S+DG+ R+W      +           +    FS
Sbjct: 234 LRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293

Query: 207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL--RKPASVLSISLDGKYLAMG-S 263
            DG            D   + ++D+ T   +    L     P S LS S DG  L  G S
Sbjct: 294 PDGK----LLASGSSDGT-VRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS 348

Query: 264 KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK 308
            DG I + D++        K L   +++  V F P  RVV + S 
Sbjct: 349 DDGTIRLWDLRT---GKPLKTLEGHSNVLSVSFSPDGRVVSSGST 390

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 18/170 (10%)

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTD 175
           C++FS DG   A G  DG +++    +  ++    K H   V D+  S D  +LA+ S+D
Sbjct: 14  CVAFSPDGKLLATGSGDGTIKVWDLETGELLR-TLKGHTGPVRDVAASADGTYLASGSSD 72

Query: 176 GSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234
            + R+W  E G    T     S   +    FS DG    L  +    DK  + V+D+ T 
Sbjct: 73  KTIRLWDLETGECVRTLTGHTSY--VSSVAFSPDG--RILSSS--SRDKT-IKVWDVETG 125

Query: 235 NKI----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH 280
             +    GH        + ++ S DG ++A  S+DG I + D++  +   
Sbjct: 126 KCLTTLRGHT----DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA 171

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 12/162 (7%)

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
            ++FS DG   ++   D  +++    + + +         V  + FS D  F+A++S DG
Sbjct: 98  SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157

Query: 177 SARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235
           + ++W    G    T      +  +    FS DG K  L  +    D  +  ++D+ST  
Sbjct: 158 TIKLWDLRTGKCVATLTGHTGE--VNSVAFSPDGEK-LLSSS---SDGTIK-LWDLSTGK 210

Query: 236 KIGHKRLLRKPASVLSI--SLDGKYLAMGSKDGDICVVDVKK 275
            +    L      V S+  S DG  LA GS+DG I V D++ 
Sbjct: 211 CL--GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 54.7 bits (130), Expect = 3e-08
 Identities = 41/202 (20%), Positives = 77/202 (38%), Gaps = 20/202 (9%)

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL-----DEPKAHKSVLDMDFSLDSEFLAT 171
            ++FS DG    +G  DG +++    +   ++         +   +       +S  LA+
Sbjct: 70  SIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS 129

Query: 172 TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231
           +S DG+ ++W                E +    FS DG    L  +    D   + ++D+
Sbjct: 130 SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK---LLASGSSLDG-TIKLWDL 185

Query: 232 STWNKI----GHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEINHWSKRLH 286
            T   +    GH      P S L+ S DG  L    S DG I + D+   ++   +   H
Sbjct: 186 RTGKPLSTLAGHTD----PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241

Query: 287 LGTSIALVEFCPTQRVVLTASK 308
             + ++   F P   ++ + S 
Sbjct: 242 SDSVVSS--FSPDGSLLASGSS 261

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 21/163 (12%)

Query: 152 KAHKS-VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210
           K H   V  + FS D + LAT S DG+ ++W  E G     L  ++   +     S DGT
Sbjct: 6   KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP-VRDVAASADGT 64

Query: 211 KPFLFCTVQRGDKALLAVYDISTWNKI----GHKRLLRKPASVLSISL--DGKYLAMGSK 264
             +L           + ++D+ T   +    GH       + V S++   DG+ L+  S+
Sbjct: 65  --YLASG---SSDKTIRLWDLETGECVRTLTGHT------SYVSSVAFSPDGRILSSSSR 113

Query: 265 DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS 307
           D  I V DV+  +    + R H    +  V F P    V ++S
Sbjct: 114 DKTIKVWDVETGKCLT-TLRGHTD-WVNSVAFSPDGTFVASSS 154

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 7/126 (5%)

Query: 57  YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK 116
                  G+  ++A +P G+  + S+++G  KL+++  G     L   +           
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN------- 223

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
            ++FS DG   A+G  DG +R+    +   +        SV  + +S D + LA+ S DG
Sbjct: 224 SVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283

Query: 177 SARIWK 182
           + RIW 
Sbjct: 284 TIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 53.6 bits (127), Expect = 8e-08
 Identities = 56/256 (21%), Positives = 97/256 (37%), Gaps = 22/256 (8%)

Query: 27  SSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86
               +S  S   I  +D  T  +  S L          D +  + +P G      +++G 
Sbjct: 211 GLLIASGSSDGTIRLWDLSTGKLLRSTL------SGHSDSVVSSFSPDGSLLASGSSDGT 264

Query: 87  CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH-WPSLR 145
            +L+++   ++ +  L+     +        ++FS DG   A+G  DG +R+        
Sbjct: 265 IRLWDLRSSSSLLRTLSGHSSSV------LSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318

Query: 146 IILDEPKAHKS-VLDMDFSLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKIELC 203
           +     K H+  V  + FS D   L +  S DG+ R+W    G      T      +   
Sbjct: 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG--KPLKTLEGHSNVLSV 376

Query: 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS 263
            FS DG                + ++D+ST + + +        + L  S DGK LA GS
Sbjct: 377 SFSPDG-----RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGS 431

Query: 264 KDGDICVVDVKKMEIN 279
            D  I + D+K    +
Sbjct: 432 SDNTIRLWDLKTSLKS 447

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 58/251 (23%), Positives = 103/251 (41%), Gaps = 35/251 (13%)

Query: 69  IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA 128
           +A +P G      + +G  K++++  G     L     P        + ++ S DG+  A
Sbjct: 15  VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPV-------RDVAASADGTYLA 67

Query: 129 AGGVDGHLRIMHWP-SLRIILDEPKAHKS-VLDMDFSLDSEFLATTSTDGSARIWKTEDG 186
           +G  D  +R+  W       +     H S V  + FS D   L+++S D + ++W  E G
Sbjct: 68  SGSSDKTIRL--WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG 125

Query: 187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI----GHKRL 242
              T L  ++D  +    FS DGT  F+  + Q  D  +  ++D+ T   +    GH   
Sbjct: 126 KCLTTLRGHTDW-VNSVAFSPDGT--FVASSSQ--DGTIK-LWDLRTGKCVATLTGHTG- 178

Query: 243 LRKPASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRL--HLGTSIALVEFCP 298
                 V S++   DG+ L   S DG I + D+           L  H     ++  F P
Sbjct: 179 -----EVNSVAFSPDGEKLLSSSSDGTIKLWDLST---GKCLGTLRGHENGVNSVA-FSP 229

Query: 299 TQRVVLTASKE 309
              ++ + S++
Sbjct: 230 DGYLLASGSED 240

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 31/180 (17%), Positives = 66/180 (36%), Gaps = 15/180 (8%)

Query: 30  ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TTNGGCK 88
           + SS   + ++  +        +          EG   +++ +P G   V   + +G  +
Sbjct: 301 SGSSDGTVRLWDLETGKLLSSLT------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354

Query: 89  LFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL 148
           L+++  G     L                +SFS DG   ++G  DG +R+    +  ++ 
Sbjct: 355 LWDLRTGKPLKTLEGH--------SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLR 406

Query: 149 DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD 208
           +       V  +DFS D + LA+ S+D + R+W  +  +     + +             
Sbjct: 407 NLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSSDLSV 466

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 49/215 (22%), Positives = 81/215 (37%), Gaps = 19/215 (8%)

Query: 55  VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGP 114
                        ++A +P G     S+ +   K+++V  G     L             
Sbjct: 85  CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV------ 138

Query: 115 QKCLSFSVDGSRFAAGGVDGHLRI--MHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLAT 171
              ++FS DG+  A+   DG +++  +        L     H   V  + FS D E L +
Sbjct: 139 -NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL---TGHTGEVNSVAFSPDGEKLLS 194

Query: 172 TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231
           +S+DG+ ++W    G       R  +  +    FS DG    L    + G    + V+D+
Sbjct: 195 SSSDGTIKLWDLSTG-KCLGTLRGHENGVNSVAFSPDGY--LLASGSEDG---TIRVWDL 248

Query: 232 STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG 266
            T   +          + L+ S DGK LA GS DG
Sbjct: 249 RTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.2 bits (100), Expect = 2e-04
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKP 212
            S+  + FS D E L + S+DG+ ++W  ++G     +    +     +L   S DG   
Sbjct: 66  DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSI 125

Query: 213 FLFCTVQRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAMGS-KDGDICV 270
            L  +        + ++D+ST  K+        +  + L+ S DGK LA GS  DG I +
Sbjct: 126 LLASS---SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL 182

Query: 271 VDVKK 275
            D++ 
Sbjct: 183 WDLRT 187

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 152 KAHKS-VLDMDFSLDSEFLATTSTDGSARIWK 182
           K H   V  + FS D   LA+ S DG+ R+W 
Sbjct: 8   KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 152 KAHKS-VLDMDFSLDSEFLATTSTDGSARIWK 182
           K H   V  + FS D ++LA+ S DG+ ++W 
Sbjct: 9   KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	392
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.98
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.98
PTZ00420	568	coronin; Provisional	99.98
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.98
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.98
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.98
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG2055	514	consensus WD40 repeat protein [General function pr	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG2048	691	consensus WD40 repeat protein [General function pr	99.96
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.96
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG1273	405	consensus WD40 repeat protein [General function pr	99.95
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG2055	514	consensus WD40 repeat protein [General function pr	99.95
KOG4328	498	consensus WD40 protein [Function unknown]	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG2048	691	consensus WD40 repeat protein [General function pr	99.94
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.94
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.93
KOG4328	498	consensus WD40 protein [Function unknown]	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.93
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.92
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.92
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.92
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.92
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.91
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.91
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.91
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.91
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.91
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.91
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.9
KOG2096	420	consensus WD40 repeat protein [General function pr	99.89
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.89
PRK11028	330	6-phosphogluconolactonase; Provisional	99.89
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.88
COG2319	466	FOG: WD40 repeat [General function prediction only	99.87
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.87
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.87
KOG4227	609	consensus WD40 repeat protein [General function pr	99.87
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.87
KOG0649	325	consensus WD40 repeat protein [General function pr	99.86
KOG1188	376	consensus WD40 repeat protein [General function pr	99.86
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.86
KOG1963	792	consensus WD40 repeat protein [General function pr	99.86
COG2319	466	FOG: WD40 repeat [General function prediction only	99.86
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.85
KOG0649	325	consensus WD40 repeat protein [General function pr	99.85
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.85
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.85
KOG2139	445	consensus WD40 repeat protein [General function pr	99.83
PRK01742	429	tolB translocation protein TolB; Provisional	99.83
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.83
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.82
KOG1963	792	consensus WD40 repeat protein [General function pr	99.82
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.82
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.82
PRK11028	330	6-phosphogluconolactonase; Provisional	99.81
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.81
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.81
KOG1188	376	consensus WD40 repeat protein [General function pr	99.81
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.81
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.8
KOG4227	609	consensus WD40 repeat protein [General function pr	99.8
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.8
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.79
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.79
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.79
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.78
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.78
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.78
PRK01742	429	tolB translocation protein TolB; Provisional	99.77
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.77
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.77
KOG1310	758	consensus WD40 repeat protein [General function pr	99.77
PRK03629	429	tolB translocation protein TolB; Provisional	99.76
KOG1334	559	consensus WD40 repeat protein [General function pr	99.75
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.74
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.74
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.74
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.74
PRK05137	435	tolB translocation protein TolB; Provisional	99.73
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.73
KOG2139	445	consensus WD40 repeat protein [General function pr	99.73
KOG2321	703	consensus WD40 repeat protein [General function pr	99.73
PRK02889	427	tolB translocation protein TolB; Provisional	99.73
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.72
PRK04922	433	tolB translocation protein TolB; Provisional	99.72
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.72
PRK03629	429	tolB translocation protein TolB; Provisional	99.71
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.7
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.7
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.69
PRK05137	435	tolB translocation protein TolB; Provisional	99.68
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.68
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.68
KOG1334	559	consensus WD40 repeat protein [General function pr	99.68
PRK02889	427	tolB translocation protein TolB; Provisional	99.67
KOG1310	758	consensus WD40 repeat protein [General function pr	99.67
PRK04922	433	tolB translocation protein TolB; Provisional	99.66
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.66
KOG2321	703	consensus WD40 repeat protein [General function pr	99.63
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.62
PRK01029	428	tolB translocation protein TolB; Provisional	99.62
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.62
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.62
PRK00178	430	tolB translocation protein TolB; Provisional	99.62
PRK04792	448	tolB translocation protein TolB; Provisional	99.61
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.6
KOG2315	566	consensus Predicted translation initiation factor	99.59
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.59
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.59
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.58
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.55
PRK01029	428	tolB translocation protein TolB; Provisional	99.55
PRK00178	430	tolB translocation protein TolB; Provisional	99.55
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.54
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.53
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.53
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.52
PRK04792	448	tolB translocation protein TolB; Provisional	99.52
KOG4547	541	consensus WD40 repeat-containing protein [General	99.52
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.52
COG4946	668	Uncharacterized protein related to the periplasmic	99.47
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.47
KOG4547	541	consensus WD40 repeat-containing protein [General	99.47
COG4946	668	Uncharacterized protein related to the periplasmic	99.45
KOG2314	698	consensus Translation initiation factor 3, subunit	99.44
KOG2315	566	consensus Predicted translation initiation factor	99.44
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.42
KOG2314	698	consensus Translation initiation factor 3, subunit	99.41
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.41
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.41
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.39
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.36
PRK04043	419	tolB translocation protein TolB; Provisional	99.36
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.36
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.34
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.32
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.32
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.32
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.31
PRK04043	419	tolB translocation protein TolB; Provisional	99.31
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.29
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.29
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.26
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.25
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.25
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.25
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.23
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.22
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.21
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.2
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.2
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.19
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.19
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.18
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.18
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.16
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.16
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.12
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.07
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.02
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.98
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.97
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.97
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.94
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.92
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.91
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.9
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.9
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.88
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.87
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.86
KOG2695	425	consensus WD40 repeat protein [General function pr	98.84
KOG2695	425	consensus WD40 repeat protein [General function pr	98.82
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.81
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.81
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.8
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.8
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.77
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.77
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.75
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.74
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.74
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.73
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.71
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.67
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.67
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.67
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.66
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.6
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.58
PRK02888	635	nitrous-oxide reductase; Validated	98.57
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.55
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.52
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.51
PRK02888	635	nitrous-oxide reductase; Validated	98.51
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.49
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	98.47
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.46
COG3391	381	Uncharacterized conserved protein [Function unknow	98.45
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.42
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.39
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.38
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.38
KOG3621	726	consensus WD40 repeat-containing protein [General	98.38
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.37
KOG3621	726	consensus WD40 repeat-containing protein [General	98.35
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.35
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.35
COG3391	381	Uncharacterized conserved protein [Function unknow	98.35
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.29
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.28
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.26
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.23
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.17
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.17
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.17
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.15
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.14
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.13
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.11
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.11
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.06
PRK13616	591	lipoprotein LpqB; Provisional	98.04
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.03
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.01
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	98.01
PRK13616	591	lipoprotein LpqB; Provisional	98.0
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.95
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.95
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.94
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.91
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.85
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.73
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.71
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.71
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.7
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.67
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.67
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.67
KOG2395	644	consensus Protein involved in vacuole import and d	97.64
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.63
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.54
PRK10115	686	protease 2; Provisional	97.52
KOG2444	238	consensus WD40 repeat protein [General function pr	97.52
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.44
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.42
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.41
KOG2395	644	consensus Protein involved in vacuole import and d	97.41
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.31
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.29
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.25
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.24
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.22
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.2
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.13
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.03
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.02
PHA02713	557	hypothetical protein; Provisional	97.01
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.99
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.98
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.96
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.96
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.94
PRK10115	686	protease 2; Provisional	96.91
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.9
KOG2444	238	consensus WD40 repeat protein [General function pr	96.79
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	96.64
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.64
PHA02713	557	hypothetical protein; Provisional	96.6
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.57
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.56
PHA03098	534	kelch-like protein; Provisional	96.51
PRK13684	334	Ycf48-like protein; Provisional	96.3
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.24
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.21
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.18
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.14
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.13
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.09
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.05
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	95.99
PHA03098	534	kelch-like protein; Provisional	95.97
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.95
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.83
PHA02790	480	Kelch-like protein; Provisional	95.77
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.72
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.6
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.53
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.38
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.29
COG5167	776	VID27 Protein involved in vacuole import and degra	95.27
PRK13684	334	Ycf48-like protein; Provisional	95.2
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.1
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.04
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.95
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.94
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.92
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.91
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.67
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.6
PHA02790	480	Kelch-like protein; Provisional	94.57
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	94.57
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.4
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.36
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	94.1
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.96
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.89
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.89
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.88
COG5167	776	VID27 Protein involved in vacuole import and degra	93.77
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	93.61
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	93.39
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.19
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.17
COG4590	733	ABC-type uncharacterized transport system, permeas	92.93
KOG2247	615	consensus WD40 repeat-containing protein [General	92.88
PF12768	281	Rax2: Cortical protein marker for cell polarity	92.81
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	92.79
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	92.79
KOG2247	615	consensus WD40 repeat-containing protein [General	92.77
COG1520	370	FOG: WD40-like repeat [Function unknown]	92.65
COG3292	671	Predicted periplasmic ligand-binding sensor domain	92.43
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.37
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	92.35
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.28
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.02
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.95
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	91.87
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	91.73
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	91.73
COG1520	370	FOG: WD40-like repeat [Function unknown]	91.36
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	91.14
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.12
COG4590	733	ABC-type uncharacterized transport system, permeas	90.83
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	90.78
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.03
PLN02193	470	nitrile-specifier protein	90.01
COG5276	370	Uncharacterized conserved protein [Function unknow	89.93
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	89.86
COG5276	370	Uncharacterized conserved protein [Function unknow	89.69
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	89.32
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.32
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	89.21
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.88
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.84
PLN02153	341	epithiospecifier protein	88.67
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	88.6
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.69
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.55
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.18
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	86.79
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	86.77
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	86.54
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	86.43
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	86.35
KOG3616	1636	consensus Selective LIM binding factor [Transcript	86.17
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	85.95
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	85.18
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	84.54
PF14727	418	PHTB1_N: PTHB1 N-terminus	84.16
KOG2109	788	consensus WD40 repeat protein [General function pr	84.16
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	83.41

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-50  Score=328.01  Aligned_cols=320  Identities=16%  Similarity=0.171  Sum_probs=271.3

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      +++|.|++|+|++.   .+++|++      |.++++|+++        .....++.++|...|.|++|+|||+.||+|+.
T Consensus       115 ~e~Vl~~~fsp~g~---~l~tGsG------D~TvR~WD~~--------TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~  177 (480)
T KOG0271|consen  115 GEAVLSVQFSPTGS---RLVTGSG------DTTVRLWDLD--------TETPLFTCKGHKNWVLCVAWSPDGKKIASGSK  177 (480)
T ss_pred             CCcEEEEEecCCCc---eEEecCC------CceEEeeccC--------CCCcceeecCCccEEEEEEECCCcchhhcccc
Confidence            57999999999884   4888888      6779999998        44455678999999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-----CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEE
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-----DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL  158 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~  158 (392)
                      ||+|++||.++++.......      .|...|++++|.|     ..++|++++.||.++|||+..++++..+.+|..+|+
T Consensus       178 dg~I~lwdpktg~~~g~~l~------gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT  251 (480)
T KOG0271|consen  178 DGSIRLWDPKTGQQIGRALR------GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT  251 (480)
T ss_pred             CCeEEEecCCCCCccccccc------CcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceE
Confidence            99999999998876544332      4888999999976     567999999999999999999999999999999999


Q ss_pred             EEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEec-----------CCCCcceE-------------
Q 016257          159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS-----------KDGTKPFL-------------  214 (392)
Q Consensus       159 ~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~~~~~~-------------  214 (392)
                      |+.|--+| +|++++.|++|++|+...|++.+.+.+|.. .|+.++.+           |.+...--             
T Consensus       252 CvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah-wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~  329 (480)
T KOG0271|consen  252 CVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH-WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE  329 (480)
T ss_pred             EEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch-heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence            99998654 899999999999999999999998887644 78888766           22222000             


Q ss_pred             -------EEEEEeCCccEEEEEeCCC-ceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccc
Q 016257          215 -------FCTVQRGDKALLAVYDIST-WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH  286 (392)
Q Consensus       215 -------~~~~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  286 (392)
                             -.++++++|.++.+|+... .+++..+.+|..-|..+.||||++++|+++-|..|++||.++|+.+..+ ++|
T Consensus       330 ~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf-RGH  408 (480)
T KOG0271|consen  330 AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF-RGH  408 (480)
T ss_pred             HhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh-hhc
Confidence                   0169999999999999764 4577888999999999999999999999999999999999999999888 789


Q ss_pred             cCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc---cc-----ceeeeeeeeeeeeeceEEEEeeecceeeeec
Q 016257          287 LGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD---WK-----EWQIYSLLLALFLASAVVFYIFFENSDSFWN  355 (392)
Q Consensus       287 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~  355 (392)
                       -..|+.++|+.|.++|++|+.|.++++|+++..+-   ++     ++.+..++++     ..+.+++.|..+++|.
T Consensus       409 -v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG-----~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  409 -VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDG-----QRVASGGKDKVLRLWR  479 (480)
T ss_pred             -cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCC-----ceeecCCCceEEEeec
Confidence             99999999999999999999999999999986532   22     3444444444     4677777899999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.1e-48  Score=320.37  Aligned_cols=282  Identities=15%  Similarity=0.205  Sum_probs=258.9

Q ss_pred             CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCC--CCeEEE
Q 016257            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVC   80 (392)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--~~~l~~   80 (392)
                      ...||..+.|++++   .++++|+-      .+.+++|+..        ......+|.||.+.|.++.|+|.  +..+|+
T Consensus       174 d~rPis~~~fS~ds---~~laT~sw------sG~~kvW~~~--------~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat  236 (459)
T KOG0272|consen  174 DTRPISGCSFSRDS---KHLATGSW------SGLVKVWSVP--------QCNLLQTLRGHTSRVGAAVFHPVDSDLNLAT  236 (459)
T ss_pred             CCCcceeeEeecCC---CeEEEeec------CCceeEeecC--------CcceeEEEeccccceeeEEEccCCCccceee
Confidence            36799999999998   56888777      4569999987        45667889999999999999996  568999


Q ss_pred             EeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEE
Q 016257           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (392)
Q Consensus        81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i  160 (392)
                      ++.||++++|++.+...+..+.       .|...|..++|+|+|++|++++.|.+-++||++++..+....+|...|.++
T Consensus       237 ~s~Dgtvklw~~~~e~~l~~l~-------gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~i  309 (459)
T KOG0272|consen  237 ASADGTVKLWKLSQETPLQDLE-------GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSI  309 (459)
T ss_pred             eccCCceeeeccCCCcchhhhh-------cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccccccee
Confidence            9999999999998876544443       377899999999999999999999999999999999988888999999999


Q ss_pred             EecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeee
Q 016257          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (392)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~  240 (392)
                      +|+|||.++++|+.|..-+|||+++++++..+.+|.. +|..++|+|+|..     +++|+.|++++|||++..+.+..+
T Consensus       310 af~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~-----lATgs~Dnt~kVWDLR~r~~ly~i  383 (459)
T KOG0272|consen  310 AFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYH-----LATGSSDNTCKVWDLRMRSELYTI  383 (459)
T ss_pred             EecCCCceeeccCccchhheeecccCcEEEEeccccc-ceeeEeECCCceE-----EeecCCCCcEEEeeecccccceec
Confidence            9999999999999999999999999999999988655 8999999999998     899999999999999999999999


Q ss_pred             cccCCCcEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEE
Q 016257          241 RLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (392)
Q Consensus       241 ~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  316 (392)
                      ..|..-|+.+.|+| .|.+|++++.|++++||..++..+++.+ .+| ++.|.++..++|++++++++.|.++++|.
T Consensus       384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL-aGH-e~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL-AGH-EGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh-cCC-ccceEEEEeccCCceEEEeccCceeeecc
Confidence            99999999999999 7899999999999999999999999887 699 99999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.6e-48  Score=311.56  Aligned_cols=317  Identities=16%  Similarity=0.199  Sum_probs=264.3

Q ss_pred             ceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC
Q 016257           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (392)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (392)
                      .+...+.||.++|.|++|+|+|..|++|+.|.++++||+.+........       .|...|.|++|+|||+.||+|+.|
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~K-------gH~~WVlcvawsPDgk~iASG~~d  178 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCK-------GHKNWVLCVAWSPDGKKIASGSKD  178 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeec-------CCccEEEEEEECCCcchhhccccC
Confidence            4555789999999999999999999999999999999999876554443       378899999999999999999999


Q ss_pred             CcEEEEeCCCCceeec-ccCCCCcEEEEEecC-----CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecC
Q 016257          134 GHLRIMHWPSLRIILD-EPKAHKSVLDMDFSL-----DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK  207 (392)
Q Consensus       134 g~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~-----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  207 (392)
                      |+|++||.++++++.. +.+|...|++++|.|     ..++|++++.||.++|||+..++++..+.+|.. +|+|+.|--
T Consensus       179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG  257 (480)
T KOG0271|consen  179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGG  257 (480)
T ss_pred             CeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc-ceEEEEEcC
Confidence            9999999999887654 566777999999976     567899999999999999999999999988765 899999987


Q ss_pred             CCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEEC-----------CCCC-------------------
Q 016257          208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS-----------LDGK-------------------  257 (392)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s-----------~~~~-------------------  257 (392)
                      +|-      +++++.|++|++|+...+.....+++|...|+.++.+           |.++                   
T Consensus       258 ~gl------iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~  331 (480)
T KOG0271|consen  258 EGL------IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV  331 (480)
T ss_pred             Cce------EEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence            776      7999999999999999999999999999999998887           2233                   


Q ss_pred             ------EEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccccee--ee
Q 016257          258 ------YLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQ--IY  329 (392)
Q Consensus       258 ------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~  329 (392)
                            .|++|+.|.++.+|+....+....-..+| ...|+.+.||||++++|+++.|.+|++|+-+.++-+..+.  +.
T Consensus       332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH-q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~  410 (480)
T KOG0271|consen  332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH-QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA  410 (480)
T ss_pred             hccCcceeEEecCCceEEEecccccccchhhhhch-hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc
Confidence                  49999999999999987665433334789 9999999999999999999999999999999876554331  11


Q ss_pred             e-eeeeeeeeceEEEEeeecceeeeecccccccccCCC-CcccccCCCCCccccceec
Q 016257          330 S-LLLALFLASAVVFYIFFENSDSFWNFPVARNQHGGP-KIESILRDPQSSDDQNMWN  385 (392)
Q Consensus       330 ~-~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~  385 (392)
                      . .-......+..+++++.|.++++|++.+.+-..-.| +.+.++.+.=+.|+|.-++
T Consensus       411 ~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~s  468 (480)
T KOG0271|consen  411 AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVAS  468 (480)
T ss_pred             eeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeec
Confidence            1 111222345577778889999999999988666666 7777888777777776554

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.5e-45  Score=302.14  Aligned_cols=280  Identities=18%  Similarity=0.159  Sum_probs=243.8

Q ss_pred             CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC--CCEEEEEeCCCcEEE
Q 016257           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRI  138 (392)
Q Consensus        61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i  138 (392)
                      +-+.+|..+.|++|++.|+||+.+|.+++|+..+......+..       |.+.+.++.|+|.  +..+++++.||++++
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~g-------H~~~v~~~~fhP~~~~~~lat~s~Dgtvkl  245 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRG-------HTSRVGAAVFHPVDSDLNLATASADGTVKL  245 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEec-------cccceeeEEEccCCCccceeeeccCCceee
Confidence            4467999999999999999999999999999998865555543       8899999999995  668999999999999


Q ss_pred             EeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (392)
                      |++.+..++..+.+|...|..++|+|+|++|++++.|.+-++||++++..+....+|.. .|.+++|.|||..     ++
T Consensus       246 w~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~-~v~~iaf~~DGSL-----~~  319 (459)
T KOG0272|consen  246 WKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSK-GVFSIAFQPDGSL-----AA  319 (459)
T ss_pred             eccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccc-ccceeEecCCCce-----ee
Confidence            99999889988999988999999999999999999999999999999888776666654 7999999999996     79


Q ss_pred             EeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEee
Q 016257          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (392)
Q Consensus       219 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  298 (392)
                      +|+.|..-+|||+++++++..+.+|..+|.+++|+|+|..||+|+.|++++|||++..+.+..+ .+| ..-|+.+.|+|
T Consensus       320 tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i-pAH-~nlVS~Vk~~p  397 (459)
T KOG0272|consen  320 TGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI-PAH-SNLVSQVKYSP  397 (459)
T ss_pred             ccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec-ccc-cchhhheEecc
Confidence            9999999999999999999999999999999999999999999999999999999998888777 689 99999999999


Q ss_pred             -CCCeEEEEeCCCeEEEEEeecCccccce---eeeeeeeeeeeeceEEEEeeecceeeeec
Q 016257          299 -TQRVVLTASKEWGAMITKLTVPADWKEW---QIYSLLLALFLASAVVFYIFFENSDSFWN  355 (392)
Q Consensus       299 -~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~i~~W~  355 (392)
                       .|.+|++++.|++++||.-......+..   .....-.....++..++++++|+++++|.
T Consensus       398 ~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  398 QEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence             7889999999999999987754433321   11111111223445678888999999996

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=9.1e-42  Score=265.74  Aligned_cols=295  Identities=18%  Similarity=0.179  Sum_probs=241.6

Q ss_pred             CceEEEeeCCCCCeeEEEEcCC-CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe
Q 016257           53 PLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (392)
Q Consensus        53 ~~~~~~~~~h~~~v~~~~~sp~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  131 (392)
                      ..+..++++|++.|+.++..+. .+.++++++|..+.+|++.......-...+  ....|...|..+..++||++.++++
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r--~~~GHsH~v~dv~~s~dg~~alS~s   82 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVR--RLTGHSHFVSDVVLSSDGNFALSAS   82 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceee--eeeccceEecceEEccCCceEEecc
Confidence            3456679999999999999886 457889999999999999876432211111  1123778999999999999999999


Q ss_pred             CCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCC-CcceEEEEecCCCC
Q 016257          132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGT  210 (392)
Q Consensus       132 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~  210 (392)
                      .|+++++||+.+++..+.+.+|...|.+++|++|.+.+++|+.|.+|++|++. +.+..++.... .+.|.++.|+|+..
T Consensus        83 wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~  161 (315)
T KOG0279|consen   83 WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNES  161 (315)
T ss_pred             ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCC
Confidence            99999999999999999999999999999999999999999999999999985 45555665554 77999999999964


Q ss_pred             cceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcc
Q 016257          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS  290 (392)
Q Consensus       211 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  290 (392)
                      ..+   +++++.|+++++||+++.+....+.+|.+.++.+++||||.++++|+.||.+.+||++.++.+..+  .| ...
T Consensus       162 ~p~---Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl--~a-~~~  235 (315)
T KOG0279|consen  162 NPI---IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL--EA-FDI  235 (315)
T ss_pred             CcE---EEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec--cC-CCe
Confidence            433   799999999999999999999999999999999999999999999999999999999999987765  55 789


Q ss_pred             eEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccccee------------eeeeeeeeeeeceEEEEeeecceeeeeccc
Q 016257          291 IALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQ------------IYSLLLALFLASAVVFYIFFENSDSFWNFP  357 (392)
Q Consensus       291 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~  357 (392)
                      |.+++|+|+..+|+.+. +..|+||++..........            ..............++.+..|+.|++|.+.
T Consensus       236 v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  236 VNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            99999999976665554 5579999998654332211            111112222334577888899999999875

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=9.9e-42  Score=267.19  Aligned_cols=286  Identities=17%  Similarity=0.176  Sum_probs=244.4

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .++|+++.|++|..+   +++++.      |+++.||+--..        ...+.+.-....|..++|+|.|+++|+|+-
T Consensus        55 ~~Ki~~~~ws~Dsr~---ivSaSq------DGklIvWDs~Tt--------nK~haipl~s~WVMtCA~sPSg~~VAcGGL  117 (343)
T KOG0286|consen   55 LNKIYAMDWSTDSRR---IVSASQ------DGKLIVWDSFTT--------NKVHAIPLPSSWVMTCAYSPSGNFVACGGL  117 (343)
T ss_pred             ccceeeeEecCCcCe---EEeecc------CCeEEEEEcccc--------cceeEEecCceeEEEEEECCCCCeEEecCc
Confidence            478999999999854   555444      777888876522        222334444788999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      |+...||++.+.+..... ........|.+.+.++.|-+|+ .|++++.|.++.+||+++++.+..+.+|.+.|.+++++
T Consensus       118 dN~Csiy~ls~~d~~g~~-~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~  195 (343)
T KOG0286|consen  118 DNKCSIYPLSTRDAEGNV-RVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLS  195 (343)
T ss_pred             CceeEEEecccccccccc-eeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecC
Confidence            999999999865321111 1112233589999999998865 78899999999999999999999999999999999999


Q ss_pred             C-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc
Q 016257          164 L-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (392)
Q Consensus       164 ~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~  242 (392)
                      | +++.+++|+.|+..++||++.+.+.++|.+|.. .|.+++|.|+|..     ++++++|++.++||+|..+.+..+..
T Consensus       196 p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~a-----fatGSDD~tcRlyDlRaD~~~a~ys~  269 (343)
T KOG0286|consen  196 PSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDA-----FATGSDDATCRLYDLRADQELAVYSH  269 (343)
T ss_pred             CCCCCeEEecccccceeeeeccCcceeEeeccccc-ccceEEEccCCCe-----eeecCCCceeEEEeecCCcEEeeecc
Confidence            9 999999999999999999999999999988755 7999999999997     89999999999999999887766653


Q ss_pred             --cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEE
Q 016257          243 --LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (392)
Q Consensus       243 --~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  316 (392)
                        ...+|++++||..|++|++|..|.++.+||.-.++....+ .+| +..|+++..+|||..+++|+.|..++||.
T Consensus       270 ~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L-~GH-eNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  270 DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL-AGH-ENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe-ecc-CCeeEEEEECCCCcEEEecchhHheeecC
Confidence              3468999999999999999999999999999998888777 599 99999999999999999999999999994

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.4e-41  Score=266.32  Aligned_cols=287  Identities=13%  Similarity=0.132  Sum_probs=241.3

Q ss_pred             eEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC
Q 016257           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (392)
Q Consensus        55 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (392)
                      .+.+|+||.+.|+++.|++|+++|++++.||.+.|||.-+......+..       ....|..++|+|.|+++|+|+.|+
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-------~s~WVMtCA~sPSg~~VAcGGLdN  119 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-------PSSWVMTCAYSPSGNFVACGGLDN  119 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec-------CceeEEEEEECCCCCeEEecCcCc
Confidence            4478999999999999999999999999999999999987765544433       246899999999999999999999


Q ss_pred             cEEEEeCCCC------ceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecC-
Q 016257          135 HLRIMHWPSL------RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK-  207 (392)
Q Consensus       135 ~i~i~d~~~~------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-  207 (392)
                      ...||++.+.      +....+.+|.+.+.++.|-+| ..|++++.|.++.+||+++++.+..+.+|.. .|.++.++| 
T Consensus       120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~g-DV~slsl~p~  197 (343)
T KOG0286|consen  120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTG-DVMSLSLSPS  197 (343)
T ss_pred             eeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcc-cEEEEecCCC
Confidence            9999999754      234456778889999999885 5699999999999999999999999987765 699999999 


Q ss_pred             CCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecccc
Q 016257          208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL  287 (392)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  287 (392)
                      +++.     +++++.|+..++||+|.+.+++.+.+|...|+++.|.|+|.-+++|+.|++.++||++..+.+..+.....
T Consensus       198 ~~nt-----FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~  272 (343)
T KOG0286|consen  198 DGNT-----FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSI  272 (343)
T ss_pred             CCCe-----EEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcc
Confidence            6776     79999999999999999999999999999999999999999999999999999999999887776654333


Q ss_pred             CcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccce---eeeeeeeeeeeeceEEEEeeecceeeeec
Q 016257          288 GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEW---QIYSLLLALFLASAVVFYIFFENSDSFWN  355 (392)
Q Consensus       288 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~i~~W~  355 (392)
                      ..+|++++||..|++|++|..|..+.+||.-..+.....   .-..+..+.......+.++++|..+|+|.
T Consensus       273 ~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  273 ICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            678999999999999999999999999998654332211   11122222222333666778899999995

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.3e-41  Score=284.85  Aligned_cols=337  Identities=19%  Similarity=0.239  Sum_probs=261.2

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCcc----------------------------------
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSV----------------------------------   49 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~----------------------------------   49 (392)
                      .|||.+++|+.+++|+..+.-|..++       .++|.+|..+..-                                  
T Consensus       103 aG~I~Di~Wd~ds~RI~avGEGrerf-------g~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ff  175 (603)
T KOG0318|consen  103 AGPIKDISWDFDSKRIAAVGEGRERF-------GHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFF  175 (603)
T ss_pred             ccccccceeCCCCcEEEEEecCccce-------eEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEe
Confidence            68999999999998844444444433       3455555322100                                  


Q ss_pred             c-cCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEE
Q 016257           50 Y-TSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA  128 (392)
Q Consensus        50 ~-~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  128 (392)
                      . .+-.....++.|..-|.|+.|+|||.++++++.||.+.+||-.+++....+..    ...|.+.|.+++|+||++.++
T Consensus       176 eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~----~~aHkGsIfalsWsPDs~~~~  251 (603)
T KOG0318|consen  176 EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED----SDAHKGSIFALSWSPDSTQFL  251 (603)
T ss_pred             eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC----CCCccccEEEEEECCCCceEE
Confidence            0 01122335677999999999999999999999999999999999987666653    335899999999999999999


Q ss_pred             EEeCCCcEEEEeCCCCceeecc-------------------------------------------cCCCCcEEEEEecCC
Q 016257          129 AGGVDGHLRIMHWPSLRIILDE-------------------------------------------PKAHKSVLDMDFSLD  165 (392)
Q Consensus       129 ~~~~dg~i~i~d~~~~~~~~~~-------------------------------------------~~~~~~i~~i~~~~~  165 (392)
                      +++.|.+++|||+.+.+.+.++                                           .+|...|+++..+|+
T Consensus       252 T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d  331 (603)
T KOG0318|consen  252 TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD  331 (603)
T ss_pred             EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC
Confidence            9999999999998765543322                                           567779999999999


Q ss_pred             CCeEEEEcCCCcEEEEECCCCeeeEE-------------------------------E----------------------
Q 016257          166 SEFLATTSTDGSARIWKTEDGVAWTF-------------------------------L----------------------  192 (392)
Q Consensus       166 ~~~l~~~~~d~~i~vwd~~~~~~~~~-------------------------------~----------------------  192 (392)
                      +++|++|+.||.|.-|+..++..-+.                               +                      
T Consensus       332 ~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~l  411 (603)
T KOG0318|consen  332 GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGL  411 (603)
T ss_pred             CCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeE
Confidence            99999999999999999875433100                               0                      


Q ss_pred             --------------------e-------cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee--eeeeccc
Q 016257          193 --------------------T-------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRLL  243 (392)
Q Consensus       193 --------------------~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~--~~~~~~~  243 (392)
                                          +       ........+++++|++..     ++.|+.|+.+++|.+.....  ......|
T Consensus       412 av~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~-----vaVGG~Dgkvhvysl~g~~l~ee~~~~~h  486 (603)
T KOG0318|consen  412 AVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSE-----VAVGGQDGKVHVYSLSGDELKEEAKLLEH  486 (603)
T ss_pred             EEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCE-----EEEecccceEEEEEecCCcccceeeeecc
Confidence                                0       000012345777888776     79999999999999987553  3355678


Q ss_pred             CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccc
Q 016257          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADW  323 (392)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  323 (392)
                      ..+++++++|||+.+||++...+.+.+||+.+.+........| ...|.+++|+|+++++|+|+.|..|.||+++.|.+.
T Consensus       487 ~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FH-takI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~  565 (603)
T KOG0318|consen  487 RAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFH-TAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH  565 (603)
T ss_pred             cCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeee-eeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence            9999999999999999999999999999999988755554568 999999999999999999999999999999988765


Q ss_pred             ccee---eeeeeeeeeeeceEEEEeeecceeeeeccc
Q 016257          324 KEWQ---IYSLLLALFLASAVVFYIFFENSDSFWNFP  357 (392)
Q Consensus       324 ~~~~---~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~  357 (392)
                      -...   ..-.-....+.+..+++.+.|-.|++|.+.
T Consensus       566 i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  566 IIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             eEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence            2221   111223345678889999999999999974

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.3e-41  Score=257.36  Aligned_cols=281  Identities=15%  Similarity=0.186  Sum_probs=240.0

Q ss_pred             eEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccce
Q 016257           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI   99 (392)
Q Consensus        20 ~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~   99 (392)
                      .+++++      +.|.+|++|+..        ++.+..+++...+.|+.+...|+++.||+++... |++||+.+.+...
T Consensus        11 viLvsA------~YDhTIRfWqa~--------tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np~P   75 (311)
T KOG0315|consen   11 VILVSA------GYDHTIRFWQAL--------TGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNPNP   75 (311)
T ss_pred             eEEEec------cCcceeeeeehh--------cCeEEEEEecCccceeeEEEcCCcchhhhccCCe-eEEEEccCCCCCc
Confidence            566654      458889999987        7888899998889999999999999999987665 9999999876421


Q ss_pred             eeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEE
Q 016257          100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR  179 (392)
Q Consensus       100 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~  179 (392)
                      ..     ....|...|.++.|..+|+++++|++||+++|||++...+. +...+..+|+++..+|+...|++|..+|.|+
T Consensus        76 v~-----t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q-R~~~~~spVn~vvlhpnQteLis~dqsg~ir  149 (311)
T KOG0315|consen   76 VA-----TFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ-RNYQHNSPVNTVVLHPNQTELISGDQSGNIR  149 (311)
T ss_pred             ee-----EEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc-hhccCCCCcceEEecCCcceEEeecCCCcEE
Confidence            11     11137789999999999999999999999999999985544 4556778999999999999999999999999


Q ss_pred             EEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc------eeeeeecccCCCcEEEEEC
Q 016257          180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW------NKIGHKRLLRKPASVLSIS  253 (392)
Q Consensus       180 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~------~~~~~~~~~~~~v~~~~~s  253 (392)
                      +||+....+...+.......+.++...|||..     ++.+...|..++|++-..      +++..++.|...+....+|
T Consensus       150 vWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm-----l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS  224 (311)
T KOG0315|consen  150 VWDLGENSCTHELIPEDDTSIQSLTVMPDGSM-----LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS  224 (311)
T ss_pred             EEEccCCccccccCCCCCcceeeEEEcCCCcE-----EEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEEC
Confidence            99999988888877666778999999999997     788888999999998753      3556678889999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccccee
Q 016257          254 LDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQ  327 (392)
Q Consensus       254 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  327 (392)
                      ||+++||+++.|.+++||+.++.-.......+| ...++..+||.||+||++|+.|+.+++|++...++.+.|.
T Consensus       225 Pd~k~lat~ssdktv~iwn~~~~~kle~~l~gh-~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~  297 (311)
T KOG0315|consen  225 PDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH-QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ  297 (311)
T ss_pred             CCCcEEEeecCCceEEEEecCCceeeEEEeecC-CceEEeeeeccCccEEEecCCCCceeecccccCceeeecC
Confidence            999999999999999999999883333333688 8899999999999999999999999999999887665553

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9e-43  Score=284.60  Aligned_cols=288  Identities=16%  Similarity=0.207  Sum_probs=248.9

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ..+|..+.|.|++.+   +++|+.      .+.+.+|+..        .-..+..++.|..+|.++.|++++.++++|+.
T Consensus        96 kc~V~~v~WtPeGRR---Lltgs~------SGEFtLWNg~--------~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~  158 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRR---LLTGSQ------SGEFTLWNGT--------SFNFETILQAHDSPVRTMKWSHNGTWMISGDK  158 (464)
T ss_pred             ccceeeEEEcCCCce---eEeecc------cccEEEecCc--------eeeHHHHhhhhcccceeEEEccCCCEEEEcCC
Confidence            458999999999877   333333      3446788753        22333457889999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      +|.|++|+..-.... .+..      .|...|++++|+|+...+++++.||+|+|||....+....+.+|.-.|.+++|+
T Consensus       159 gG~iKyWqpnmnnVk-~~~a------hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH  231 (464)
T KOG0284|consen  159 GGMIKYWQPNMNNVK-IIQA------HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH  231 (464)
T ss_pred             CceEEecccchhhhH-HhhH------hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC
Confidence            999999998655421 1111      245899999999999999999999999999998877766777777799999999


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeeccc
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~  243 (392)
                      |...+|++++.|..|++||.+++.++.++..|.. .|..+.|+|++++     +++++.|..++++|+++.+.+..+++|
T Consensus       232 P~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~-----Llt~skD~~~kv~DiR~mkEl~~~r~H  305 (464)
T KOG0284|consen  232 PTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNW-----LLTGSKDQSCKVFDIRTMKELFTYRGH  305 (464)
T ss_pred             CccceeEEccCCceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCe-----eEEccCCceEEEEehhHhHHHHHhhcc
Confidence            9999999999999999999999999999987654 7999999999987     899999999999999999999999999


Q ss_pred             CCCcEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257          244 RKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       244 ~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                      ...+++++|+| ...+|.+|+.||.|..|.+...+.+..+..+| ...|++++|+|-|.+|++|+.|.++++|.-..+.+
T Consensus       306 kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AH-d~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~d  384 (464)
T KOG0284|consen  306 KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAH-DGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPGD  384 (464)
T ss_pred             hhhheeeccccccccceeeccCCCceEEEeccccccccCCCccc-ccceeeeeccccceeEeecCCCcceeeeccCCCCC
Confidence            99999999999 45788999999999999999777777788899 99999999999999999999999999998876654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-40  Score=256.23  Aligned_cols=288  Identities=11%  Similarity=0.140  Sum_probs=237.5

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .+.|+.++-.+.+..  ++..++      -|.++.+|.+..+..   ........++||...|..+..++||++.++++.
T Consensus        15 ~d~Vt~la~~~~~~~--~l~sas------rDk~ii~W~L~~dd~---~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw   83 (315)
T KOG0279|consen   15 TDWVTALAIKIKNSD--ILVSAS------RDKTIIVWKLTSDDI---KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW   83 (315)
T ss_pred             CceEEEEEeecCCCc--eEEEcc------cceEEEEEEeccCcc---ccCceeeeeeccceEecceEEccCCceEEeccc
Confidence            567888888887544  444433      377788999886632   245567789999999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCC--CCcEEEEE
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA--HKSVLDMD  161 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~i~  161 (392)
                      |+++++||+.+++....+..       |...|.+++|++|.+.+++|+.|.+|.+|+...... .++...  .+-|.++.
T Consensus        84 D~~lrlWDl~~g~~t~~f~G-------H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvr  155 (315)
T KOG0279|consen   84 DGTLRLWDLATGESTRRFVG-------HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVR  155 (315)
T ss_pred             cceEEEEEecCCcEEEEEEe-------cCCceEEEEecCCCceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEE
Confidence            99999999999876666654       788999999999999999999999999999875443 344433  56899999


Q ss_pred             ecCC--CCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeee
Q 016257          162 FSLD--SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (392)
Q Consensus       162 ~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~  239 (392)
                      |+|+  ..+|++++.|+++++||+++.+....+.+|.. .++.++++|||..     .++|+.||.+.+||++.++.+..
T Consensus       156 fsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGsl-----casGgkdg~~~LwdL~~~k~lys  229 (315)
T KOG0279|consen  156 FSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSL-----CASGGKDGEAMLWDLNEGKNLYS  229 (315)
T ss_pred             EcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc-cEEEEEECCCCCE-----EecCCCCceEEEEEccCCceeEe
Confidence            9997  67899999999999999999888888877654 7999999999997     78999999999999999998765


Q ss_pred             ecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccc-------cCcceEEEEEeeCCCeEEEEeCCCeE
Q 016257          240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH-------LGTSIALVEFCPTQRVVLTASKEWGA  312 (392)
Q Consensus       240 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~dg~i  312 (392)
                      +. +...|.+++|+|+...|+.+.. ..|+|||+.++..+..+....       ..-...+++|++||+.|++|..|+.|
T Consensus       230 l~-a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~i  307 (315)
T KOG0279|consen  230 LE-AFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVI  307 (315)
T ss_pred             cc-CCCeEeeEEecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcE
Confidence            54 5789999999999877776654 459999999987765543211       02235678999999999999999999


Q ss_pred             EEEEee
Q 016257          313 MITKLT  318 (392)
Q Consensus       313 ~iw~~~  318 (392)
                      ++|.+.
T Consensus       308 rv~qv~  313 (315)
T KOG0279|consen  308 RVWQVA  313 (315)
T ss_pred             EEEEee
Confidence            999875

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1e-39  Score=271.41  Aligned_cols=329  Identities=18%  Similarity=0.188  Sum_probs=261.9

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEe--eC----CCCCeeEEEEcCCCCe
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF--DE----SEGDPMTIAVNPSGDD   77 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~--~~----h~~~v~~~~~sp~~~~   77 (392)
                      ..+|.+++|+|-..  .+++.|++      +...++|.+............+++.+  .+    ....|++++|+.+|..
T Consensus       178 ~~~V~~~~WnP~~~--~llasg~~------~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~  249 (524)
T KOG0273|consen  178 ESEVFICAWNPLRD--GLLASGSG------DSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL  249 (524)
T ss_pred             CCceEEEecCchhh--hhhhccCC------ccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe
Confidence            45899999999653  26777766      44577888764222211111111111  11    2357999999999999


Q ss_pred             EEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcE
Q 016257           78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV  157 (392)
Q Consensus        78 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i  157 (392)
                      ||+|+.||.++||+..... ...+       -.|.++|.++.|+.+|++|++++.|+++.+||..+++..+.+..|..+-
T Consensus       250 LatG~~~G~~riw~~~G~l-~~tl-------~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~  321 (524)
T KOG0273|consen  250 LATGSEDGEARIWNKDGNL-ISTL-------GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA  321 (524)
T ss_pred             EEEeecCcEEEEEecCchh-hhhh-------hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc
Confidence            9999999999999976553 2222       1388999999999999999999999999999999999888777777776


Q ss_pred             EEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceee
Q 016257          158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI  237 (392)
Q Consensus       158 ~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~  237 (392)
                      .++.|-.+ ..+++++.|+.|+|+.+....++.++.+|++ .|.++.|+|.+..     ++++++|++++||.+......
T Consensus       322 lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g-~V~alk~n~tg~L-----LaS~SdD~TlkiWs~~~~~~~  394 (524)
T KOG0273|consen  322 LDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHG-EVNALKWNPTGSL-----LASCSDDGTLKIWSMGQSNSV  394 (524)
T ss_pred             cceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccC-ceEEEEECCCCce-----EEEecCCCeeEeeecCCCcch
Confidence            78899754 4689999999999999999999999998655 8999999999997     899999999999999998888


Q ss_pred             eeecccCCCcEEEEECCCC---------CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeC
Q 016257          238 GHKRLLRKPASVLSISLDG---------KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK  308 (392)
Q Consensus       238 ~~~~~~~~~v~~~~~s~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  308 (392)
                      ..+..|...|..+.|+|.|         ..+++++.|++|++||+..+.++..+ ..| ..+|++++|+|+|+++|+|+.
T Consensus       395 ~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f-~kH-~~pVysvafS~~g~ylAsGs~  472 (524)
T KOG0273|consen  395 HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL-MKH-QEPVYSVAFSPNGRYLASGSL  472 (524)
T ss_pred             hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee-ccC-CCceEEEEecCCCcEEEecCC
Confidence            9999999999999999964         47899999999999999999999987 578 999999999999999999999


Q ss_pred             CCeEEEEEeecCccccceeeeee-e-eeeeeeceEEEEeeecceeeeeccc
Q 016257          309 EWGAMITKLTVPADWKEWQIYSL-L-LALFLASAVVFYIFFENSDSFWNFP  357 (392)
Q Consensus       309 dg~i~iw~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~d~~i~~W~~~  357 (392)
                      ||.|.+|+++..+-++.+.-.-. . .+.-.....+.....|+.+.+-|+.
T Consensus       473 dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  473 DGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            99999999998776654422111 1 1111233445555568888887764

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=8.9e-40  Score=288.20  Aligned_cols=260  Identities=18%  Similarity=0.256  Sum_probs=230.8

Q ss_pred             eEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCcc--------ceee----------------ccccCCCCC
Q 016257           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT--------DINL----------------LAKKMPPLQ  110 (392)
Q Consensus        55 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~--------~~~~----------------~~~~~~~~~  110 (392)
                      +..++..-...++|..|++|+..||.|-.|..|++|.+...+.        ....                .........
T Consensus       370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G  449 (707)
T KOG0263|consen  370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG  449 (707)
T ss_pred             EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence            3334444456799999999999999999999999999985321        0000                000111346


Q ss_pred             CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeE
Q 016257          111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT  190 (392)
Q Consensus       111 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~  190 (392)
                      |.++|..+.|+|+.++|+++++|+++|+|.+.+...+....+|..+|.++.|+|.|-++|+++.|++.++|.....++++
T Consensus       450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR  529 (707)
T KOG0263|consen  450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR  529 (707)
T ss_pred             CCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchh
Confidence            89999999999999999999999999999999999999899898999999999999999999999999999999999999


Q ss_pred             EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEE
Q 016257          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV  270 (392)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  270 (392)
                      .+.+|.. .|.|+.|+|+..+     +++|+.|.++++||..++..++.+.+|.++|++++|||+|++|++|+.||.|++
T Consensus       530 ifaghls-DV~cv~FHPNs~Y-----~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~i  603 (707)
T KOG0263|consen  530 IFAGHLS-DVDCVSFHPNSNY-----VATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKI  603 (707)
T ss_pred             hhccccc-ccceEEECCcccc-----cccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEE
Confidence            8887765 6999999999998     899999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257          271 VDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       271 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                      ||+.+++.+..+ .+| .+.|.++.|+.+|..||+|+.|++|++||+.....
T Consensus       604 WDl~~~~~v~~l-~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~  653 (707)
T KOG0263|consen  604 WDLANGSLVKQL-KGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE  653 (707)
T ss_pred             EEcCCCcchhhh-hcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence            999999988877 689 99999999999999999999999999999986544

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.9e-38  Score=273.76  Aligned_cols=331  Identities=14%  Similarity=0.197  Sum_probs=256.2

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ..+|-|++|+|++   .++|.|       ..|.+++|......+.....-....++.+|...|.++.|+.|.++|++|++
T Consensus        96 k~~v~~i~fSPng---~~fav~-------~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsr  165 (893)
T KOG0291|consen   96 KRGVGAIKFSPNG---KFFAVG-------CGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSR  165 (893)
T ss_pred             cCccceEEECCCC---cEEEEE-------ecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccc
Confidence            5689999999999   456633       456689998865444322234456678899999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC---------------------
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP---------------------  142 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~---------------------  142 (392)
                      |-.+++|.++..+.....     ....|..+|-++-|..+...+++.+.||.+.+|...                     
T Consensus       166 D~s~rl~~v~~~k~~~~~-----~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~  240 (893)
T KOG0291|consen  166 DLSARLFGVDGNKNLFTY-----ALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEM  240 (893)
T ss_pred             cceEEEEEeccccccceE-----eccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccc
Confidence            999999999876642111     112355555555555555555555555555555432                     


Q ss_pred             --------------------------------------------------------------------------------
Q 016257          143 --------------------------------------------------------------------------------  142 (392)
Q Consensus       143 --------------------------------------------------------------------------------  142 (392)
                                                                                                      
T Consensus       241 ~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGD  320 (893)
T KOG0291|consen  241 DEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGD  320 (893)
T ss_pred             cccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCC
Confidence                                                                                            


Q ss_pred             ------------------CCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEE
Q 016257          143 ------------------SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCR  204 (392)
Q Consensus       143 ------------------~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~  204 (392)
                                        +...+.+..+|...+.+++++|||+++++|+.||+|+|||.+++-|..++..|.. .|+.+.
T Consensus       321 WiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts-~Vt~v~  399 (893)
T KOG0291|consen  321 WIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS-GVTAVQ  399 (893)
T ss_pred             EEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC-ceEEEE
Confidence                              1112222256667899999999999999999999999999999999999998765 699999


Q ss_pred             ecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeeccc-CCCcEEEEECCCCCEEEEEeCCC-cEEEEecCCceeeeee
Q 016257          205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLAMGSKDG-DICVVDVKKMEINHWS  282 (392)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~  282 (392)
                      |+..++.     +++++-||+|+.||+...+..+++... .-...|++..|.|..+..|+.|. .|++|++++|+++..+
T Consensus       400 f~~~g~~-----llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL  474 (893)
T KOG0291|consen  400 FTARGNV-----LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL  474 (893)
T ss_pred             EEecCCE-----EEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh
Confidence            9999997     899999999999999988887777653 34567899999999999999886 4999999999999887


Q ss_pred             eccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc----cc----ceeeeeeeeeeeeeceEEEEeeecceeeee
Q 016257          283 KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD----WK----EWQIYSLLLALFLASAVVFYIFFENSDSFW  354 (392)
Q Consensus       283 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W  354 (392)
                       .+| +++|.+++|+|++..|+++|.|.+||+|++-....    ..    +..+.+.|.+..++.     +.-||.|.+|
T Consensus       475 -sGH-EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaV-----aTldgqItf~  547 (893)
T KOG0291|consen  475 -SGH-EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAV-----ATLDGQITFF  547 (893)
T ss_pred             -cCC-CCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEE-----EEecceEEEE
Confidence             799 99999999999999999999999999999964422    11    223444555554444     4449999999


Q ss_pred             cccccccc
Q 016257          355 NFPVARNQ  362 (392)
Q Consensus       355 ~~~~~~~~  362 (392)
                      |+..+.+.
T Consensus       548 d~~~~~q~  555 (893)
T KOG0291|consen  548 DIKEAVQV  555 (893)
T ss_pred             Ehhhceee
Confidence            99877655

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-37  Score=273.18  Aligned_cols=326  Identities=17%  Similarity=0.184  Sum_probs=266.8

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      +.+|+|++|++..   .++++|=.      .+.+.+|.+.        .-.+.+.+.-.+.+|..+.|+..|++||.|+.
T Consensus       265 ~~kvtaa~fH~~t---~~lvvgFs------sG~f~LyelP--------~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~  327 (893)
T KOG0291|consen  265 SSKVTAAAFHKGT---NLLVVGFS------SGEFGLYELP--------DFNLIHSLSISDQKILTVSFNSTGDWIAFGCS  327 (893)
T ss_pred             ccceeeeeccCCc---eEEEEEec------CCeeEEEecC--------CceEEEEeecccceeeEEEecccCCEEEEcCC
Confidence            4789999999976   56665544      3346678775        44556666666789999999999999999875


Q ss_pred             C-CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257           84 N-GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (392)
Q Consensus        84 d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~  162 (392)
                      . |.+.||+..+...+.+..       .|...+.+++++|||+++++|+.||+|+|||..++-+..++..|...|+.+.|
T Consensus       328 klgQLlVweWqsEsYVlKQQ-------gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f  400 (893)
T KOG0291|consen  328 KLGQLLVWEWQSESYVLKQQ-------GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQF  400 (893)
T ss_pred             ccceEEEEEeeccceeeecc-------ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEE
Confidence            5 889999998876544332       37789999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCc-cEEEEEeCCCceeeeeec
Q 016257          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDISTWNKIGHKR  241 (392)
Q Consensus       163 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~  241 (392)
                      +..++.+++++-||+|+.||+...+..+++..+..-...+++..|.|..     +.+|+.| -.|.+|++.+|+.+..+.
T Consensus       401 ~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel-----V~AG~~d~F~IfvWS~qTGqllDiLs  475 (893)
T KOG0291|consen  401 TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL-----VCAGAQDSFEIFVWSVQTGQLLDILS  475 (893)
T ss_pred             EecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCE-----EEeeccceEEEEEEEeecCeeeehhc
Confidence            9999999999999999999999999999999888778889999999995     4555554 469999999999999999


Q ss_pred             ccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce-eeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME-INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       242 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      +|.++|.+++|+|++..|++++.|.+|++||+-... ....+  .+ ...+..++|+|+|+-|++++.||.|.+||.+..
T Consensus       476 GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl--~i-~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~  552 (893)
T KOG0291|consen  476 GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL--EI-RSDVLAVSFRPDGKELAVATLDGQITFFDIKEA  552 (893)
T ss_pred             CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE--ee-ccceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence            999999999999999999999999999999986542 22222  23 568999999999999999999999999999754


Q ss_pred             ccccc----------------e-------eeeeeeeeeeeeceEEEEeeecceeeeeccccccc
Q 016257          321 ADWKE----------------W-------QIYSLLLALFLASAVVFYIFFENSDSFWNFPVARN  361 (392)
Q Consensus       321 ~~~~~----------------~-------~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~  361 (392)
                      .....                .       .-.+...+.......+++++..+.|.++++.++--
T Consensus       553 ~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vl  616 (893)
T KOG0291|consen  553 VQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVL  616 (893)
T ss_pred             eeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhe
Confidence            32210                0       01122223334455677777888899999887653

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3e-40  Score=269.94  Aligned_cols=276  Identities=15%  Similarity=0.199  Sum_probs=236.5

Q ss_pred             CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC
Q 016257           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (392)
Q Consensus        62 h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~  141 (392)
                      -...|..+.|.|+|+.|++|+..|.+.+|+...-..       +.....|..+|+++.|++++.++++|+.+|.|++|+.
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-------EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqp  167 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-------ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQP  167 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeH-------HHHhhhhcccceeEEEccCCCEEEEcCCCceEEeccc
Confidence            356899999999999999999999999999744321       1122348999999999999999999999999999997


Q ss_pred             CCCceeecccCCC-CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEe
Q 016257          142 PSLRIILDEPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (392)
Q Consensus       142 ~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (392)
                      .-. .+.....|+ ..|.+++|+|+...+++++.||+|+|||....+....+.+|. -.|.++.|+|....     ++++
T Consensus       168 nmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHg-wdVksvdWHP~kgL-----iasg  240 (464)
T KOG0284|consen  168 NMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHG-WDVKSVDWHPTKGL-----IASG  240 (464)
T ss_pred             chh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCC-CCcceeccCCccce-----eEEc
Confidence            543 344556666 689999999998999999999999999999998888887665 47999999999876     8999


Q ss_pred             CCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCC
Q 016257          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (392)
Q Consensus       221 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  300 (392)
                      +.|..|++||.+++.++.++..|+..|..+.|+|++++|++++.|..++++|+++.+.+..+ ++| ...++++.|+|-.
T Consensus       241 skDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~-r~H-kkdv~~~~WhP~~  318 (464)
T KOG0284|consen  241 SKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY-RGH-KKDVTSLTWHPLN  318 (464)
T ss_pred             cCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh-hcc-hhhheeecccccc
Confidence            99999999999999999999999999999999999999999999999999999988877766 689 9999999999954


Q ss_pred             -CeEEEEeCCCeEEEEEeecCc---------cccceeeeeeeeeeeeeceEEEEeeecceeeeecccc
Q 016257          301 -RVVLTASKEWGAMITKLTVPA---------DWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPV  358 (392)
Q Consensus       301 -~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~  358 (392)
                       .+|.+|+.||.|..|.+....         +..+|.+.+.+.++.++     +++.|+++++|.-..
T Consensus       319 ~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~-----tgsnd~t~rfw~r~r  381 (464)
T KOG0284|consen  319 ESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILA-----TGSNDRTVRFWTRNR  381 (464)
T ss_pred             ccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEe-----ecCCCcceeeeccCC
Confidence             488899999999999987332         22377888888777444     455599999997643

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7.8e-39  Score=257.61  Aligned_cols=287  Identities=12%  Similarity=0.137  Sum_probs=252.0

Q ss_pred             ceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC
Q 016257           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (392)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (392)
                      .+...+.+|.+.|.|+++.|..+++++|+.|++++|||+.+++....+..       |...|..+++|+--.|+++++.|
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltG-------hi~~vr~vavS~rHpYlFs~ged  214 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTG-------HIETVRGVAVSKRHPYLFSAGED  214 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecc-------hhheeeeeeecccCceEEEecCC
Confidence            34557899999999999999999999999999999999999987655543       66789999999999999999999


Q ss_pred             CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcce
Q 016257          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (392)
Q Consensus       134 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (392)
                      +.|+.||++..+.++.+.+|-..|++++.+|.-+.|++|+.|.++++||+++...+..+.+|.. +|.++.+.|-..+  
T Consensus       215 k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~-~V~~V~~~~~dpq--  291 (460)
T KOG0285|consen  215 KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN-PVASVMCQPTDPQ--  291 (460)
T ss_pred             CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC-cceeEEeecCCCc--
Confidence            9999999999999999999999999999999999999999999999999999999999987755 8999999987776  


Q ss_pred             EEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEE
Q 016257          214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL  293 (392)
Q Consensus       214 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~  293 (392)
                         +++++.|++|++||++.++....+..|...+.+++.+|....+|+++.|. |+-|++..+..+..+ .+| ..-|.+
T Consensus       292 ---vit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nl-sgh-~~iint  365 (460)
T KOG0285|consen  292 ---VITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNL-SGH-NAIINT  365 (460)
T ss_pred             ---eEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcc-ccc-cceeee
Confidence               89999999999999999999999999999999999999999999999875 999999999988875 688 899999


Q ss_pred             EEEeeCCCeEEEEeCCCeEEEEEeecCccccceeeeeeeeee-----------eeeceEEEEeeecceeeeeccc
Q 016257          294 VEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLAL-----------FLASAVVFYIFFENSDSFWNFP  357 (392)
Q Consensus       294 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~d~~i~~W~~~  357 (392)
                      ++...|+ ++++|++.|.+.+||.+.+..++..+....+..+           -.....++++..|.+|++|.-.
T Consensus       366 l~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  366 LSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED  439 (460)
T ss_pred             eeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence            9998776 7889999999999999988877654333322221           1134567777789999999754

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.2e-38  Score=263.47  Aligned_cols=284  Identities=17%  Similarity=0.240  Sum_probs=246.1

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d   84 (392)
                      --|++++|+.++   .++|+|..      ++.+++|..+.         .+..+|..|.++|.++.|+.+|++|++++.|
T Consensus       236 kdVT~L~Wn~~G---~~LatG~~------~G~~riw~~~G---------~l~~tl~~HkgPI~slKWnk~G~yilS~~vD  297 (524)
T KOG0273|consen  236 KDVTSLDWNNDG---TLLATGSE------DGEARIWNKDG---------NLISTLGQHKGPIFSLKWNKKGTYILSGGVD  297 (524)
T ss_pred             CCcceEEecCCC---CeEEEeec------CcEEEEEecCc---------hhhhhhhccCCceEEEEEcCCCCEEEeccCC
Confidence            468999999998   67888877      56689998752         2234578899999999999999999999999


Q ss_pred             CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecC
Q 016257           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL  164 (392)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~  164 (392)
                      +++.+||..++.....+..       |..+-..+.|-.+ ..+++.+.|+.|+++.+...+++.++.+|+++|.++.|+|
T Consensus       298 ~ttilwd~~~g~~~q~f~~-------~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~  369 (524)
T KOG0273|consen  298 GTTILWDAHTGTVKQQFEF-------HSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP  369 (524)
T ss_pred             ccEEEEeccCceEEEeeee-------ccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC
Confidence            9999999988875544432       3444567888654 4788989999999999998899999999999999999999


Q ss_pred             CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcc----eEEEEEEeCCccEEEEEeCCCceeeeee
Q 016257          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP----FLFCTVQRGDKALLAVYDISTWNKIGHK  240 (392)
Q Consensus       165 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~d~~i~v~d~~~~~~~~~~  240 (392)
                      .+.+|++++.|++++||..........+..|.. .|..+.|+|.+...    .-..+++++.|++|++||+..+.++..+
T Consensus       370 tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f  448 (524)
T KOG0273|consen  370 TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL  448 (524)
T ss_pred             CCceEEEecCCCeeEeeecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee
Confidence            999999999999999999998888888887765 69999999976421    1122688999999999999999999999


Q ss_pred             cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       241 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      ..|..+|.+++|+|+|+++|+|+.||.|++|+.++++..+....   .+.|..++|+.+|.+|..+-.|+.+++-|++
T Consensus       449 ~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~---~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  449 MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG---TGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC---CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            99999999999999999999999999999999999999887632   5679999999999999999999999998875

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-38  Score=256.71  Aligned_cols=289  Identities=17%  Similarity=0.221  Sum_probs=252.8

Q ss_pred             CCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe
Q 016257           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (392)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  131 (392)
                      .+.+.+.+.+|..+|+.+-|+|+-..+++++.|++|++||..+++....+.       .|...+..++|+..|++|++++
T Consensus        97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr-------GHt~sv~di~~~a~Gk~l~tcS  169 (406)
T KOG0295|consen   97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR-------GHTDSVFDISFDASGKYLATCS  169 (406)
T ss_pred             CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh-------ccccceeEEEEecCccEEEecC
Confidence            345667788999999999999999999999999999999999998744443       3778899999999999999999


Q ss_pred             CCCcEEEEeCCC-CceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCC
Q 016257          132 VDGHLRIMHWPS-LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (392)
Q Consensus       132 ~dg~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (392)
                      .|-.+.+||.++ .+++....+|...|.++.|-|.|.++++++.|.+|+.|++.++-++.++..+.+ .|..++.+.||.
T Consensus       170 sDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e-wvr~v~v~~DGt  248 (406)
T KOG0295|consen  170 SDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE-WVRMVRVNQDGT  248 (406)
T ss_pred             CccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH-hEEEEEecCCee
Confidence            999999999976 456666777777999999999999999999999999999999999999998765 899999999999


Q ss_pred             cceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCC---------------CCEEEEEeCCCcEEEEecCC
Q 016257          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD---------------GKYLAMGSKDGDICVVDVKK  275 (392)
Q Consensus       211 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~~~~~dg~i~iwd~~~  275 (392)
                      .     +++++.|.++++|-+.++++...++.|..+|.+++|.|.               +.++.+++.|++|++||+.+
T Consensus       249 i-----~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t  323 (406)
T KOG0295|consen  249 I-----IASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST  323 (406)
T ss_pred             E-----EEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence            6     799999999999999999998999999999999999763               25899999999999999999


Q ss_pred             ceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccccee---eeeeeeeeeeeceEEEEeeecceee
Q 016257          276 MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQ---IYSLLLALFLASAVVFYIFFENSDS  352 (392)
Q Consensus       276 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~i~  352 (392)
                      +.++..+ .+| ...|..++|+|.|+||+++.+|+++++||++.....+.+.   .......+......+.+++-|.+++
T Consensus       324 g~cL~tL-~gh-dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~K  401 (406)
T KOG0295|consen  324 GMCLFTL-VGH-DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVK  401 (406)
T ss_pred             CeEEEEE-ecc-cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceee
Confidence            9999888 689 9999999999999999999999999999999887666553   2233333333444777788899999


Q ss_pred             eec
Q 016257          353 FWN  355 (392)
Q Consensus       353 ~W~  355 (392)
                      +|.
T Consensus       402 vwE  404 (406)
T KOG0295|consen  402 VWE  404 (406)
T ss_pred             eee
Confidence            995

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-38  Score=255.85  Aligned_cols=288  Identities=15%  Similarity=0.151  Sum_probs=250.7

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ..+|+.+-|+|+-   .++++.+.      +.+|++|++.        +..+...++||.+.+..++|+..|++|++++.
T Consensus       108 r~~vt~v~~hp~~---~~v~~as~------d~tikv~D~~--------tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs  170 (406)
T KOG0295|consen  108 RSSVTRVIFHPSE---ALVVSASE------DATIKVFDTE--------TGELERSLRGHTDSVFDISFDASGKYLATCSS  170 (406)
T ss_pred             ccceeeeeeccCc---eEEEEecC------CceEEEEEcc--------chhhhhhhhccccceeEEEEecCccEEEecCC
Confidence            3578888999976   56665544      6779999887        44556779999999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      |-.+++||..+.....      .....|...|.++.|-|.|.+|++++.|.+|+.|++.++-++.++.+|..-|..++.+
T Consensus       171 Dl~~~LWd~~~~~~c~------ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~  244 (406)
T KOG0295|consen  171 DLSAKLWDFDTFFRCI------KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVN  244 (406)
T ss_pred             ccchhheeHHHHHHHH------HHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEec
Confidence            9999999987632111      1122467789999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE----------EEEEEeCCccEEEEEeCCC
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL----------FCTVQRGDKALLAVYDIST  233 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----------~~~~~~~~d~~i~v~d~~~  233 (392)
                      .||..+++++.|.++++|-+.++++...+..|. .+|.+++|.|...+.-+          -++.+++.|++|++||+.+
T Consensus       245 ~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hE-h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t  323 (406)
T KOG0295|consen  245 QDGTIIASCSNDQTLRVWVVATKQCKAELREHE-HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST  323 (406)
T ss_pred             CCeeEEEecCCCceEEEEEeccchhhhhhhccc-cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence            999999999999999999999998888777654 48999999875432110          1368899999999999999


Q ss_pred             ceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEE
Q 016257          234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAM  313 (392)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  313 (392)
                      +.++.++.+|...|+.++|+|.|+||+++..|+++++||++++++..... .| +.-++++.|+.+..++++|+-|.+++
T Consensus       324 g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-ah-~hfvt~lDfh~~~p~VvTGsVdqt~K  401 (406)
T KOG0295|consen  324 GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE-AH-EHFVTSLDFHKTAPYVVTGSVDQTVK  401 (406)
T ss_pred             CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC-CC-cceeEEEecCCCCceEEeccccceee
Confidence            99999999999999999999999999999999999999999999998884 88 89999999999999999999999999


Q ss_pred             EEEe
Q 016257          314 ITKL  317 (392)
Q Consensus       314 iw~~  317 (392)
                      +|.-
T Consensus       402 vwEc  405 (406)
T KOG0295|consen  402 VWEC  405 (406)
T ss_pred             eeec
Confidence            9963

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5.4e-37  Score=238.18  Aligned_cols=287  Identities=14%  Similarity=0.171  Sum_probs=232.5

Q ss_pred             ceEEEeeCCCCCeeEEEEcCC-CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC
Q 016257           54 LVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (392)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~sp~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  132 (392)
                      ...+.+++|.+.+..++|+|- |..||+++.|+.|++|+...+.. ....  ....-.|...|++++|+|.|++|++|+.
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-~~ck--~vld~~hkrsVRsvAwsp~g~~La~aSF   81 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-WTCK--TVLDDGHKRSVRSVAWSPHGRYLASASF   81 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-EEEE--EeccccchheeeeeeecCCCcEEEEeec
Confidence            345678899999999999997 88999999999999999985321 1111  1111248899999999999999999999


Q ss_pred             CCcEEEEeCCCC--ceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCC---eeeEEEecCCCcceEEEEecC
Q 016257          133 DGHLRIMHWPSL--RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG---VAWTFLTRNSDEKIELCRFSK  207 (392)
Q Consensus       133 dg~i~i~d~~~~--~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~  207 (392)
                      |.++.||.-..+  +++..+.+|...|.+++|+++|++||++++|+.|-||.+..+   .+...++.|.. .|..+.|+|
T Consensus        82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-DVK~V~WHP  160 (312)
T KOG0645|consen   82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-DVKHVIWHP  160 (312)
T ss_pred             cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-cccEEEEcC
Confidence            999999986543  567778889999999999999999999999999999999744   45666666655 699999999


Q ss_pred             CCCcceEEEEEEeCCccEEEEEeCC---CceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec
Q 016257          208 DGTKPFLFCTVQRGDKALLAVYDIS---TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR  284 (392)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~v~d~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  284 (392)
                      ....     +++++.|++|++|+-.   ...+.+++.+|...|.+++|++.|..|++++.|++++||-..+     .+..
T Consensus       161 t~dl-----L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~  230 (312)
T KOG0645|consen  161 TEDL-----LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSG  230 (312)
T ss_pred             Ccce-----eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----Ccch
Confidence            8886     8999999999999876   4567889999999999999999999999999999999998652     2334


Q ss_pred             cccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeeee--------eeeee---eeeceEEEEeeecceeee
Q 016257          285 LHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYS--------LLLAL---FLASAVVFYIFFENSDSF  353 (392)
Q Consensus       285 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~~~~~~d~~i~~  353 (392)
                      .| ...++.+.|.  ...|++++.|+.|+++.-.....-+.|.+..        .++..   ....+.+++++.||.+++
T Consensus       231 ~~-sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~  307 (312)
T KOG0645|consen  231 MH-SRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNF  307 (312)
T ss_pred             hc-ccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEE
Confidence            56 7899999998  4589999999999999887654444443222        11111   113568888999999999


Q ss_pred             eccc
Q 016257          354 WNFP  357 (392)
Q Consensus       354 W~~~  357 (392)
                      |.+.
T Consensus       308 W~l~  311 (312)
T KOG0645|consen  308 WELE  311 (312)
T ss_pred             EEec
Confidence            9874

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3e-38  Score=278.60  Aligned_cols=250  Identities=18%  Similarity=0.262  Sum_probs=220.3

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCC-------Cccc----------------cCCceEEEeeC
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT-------TSVY----------------TSPLVTYVFDE   61 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~-------~~~~----------------~~~~~~~~~~~   61 (392)
                      --++|+.|++|+.   ++|.|-      .+..|++|.+.+..       ..+.                .......++-|
T Consensus       379 ~~v~ca~fSddss---mlA~Gf------~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G  449 (707)
T KOG0263|consen  379 QGVTCAEFSDDSS---MLACGF------VDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG  449 (707)
T ss_pred             CcceeEeecCCcc---hhhccc------cccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence            3578999999984   566443      37789999998521       0110                12234446889


Q ss_pred             CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC
Q 016257           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (392)
Q Consensus        62 h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~  141 (392)
                      |.++|+...|+|+.++|++++.|+++++|.+.+........       .|..+|..+.|+|-|-++|+++.|++.++|..
T Consensus       450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-------GH~~PVwdV~F~P~GyYFatas~D~tArLWs~  522 (707)
T KOG0263|consen  450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-------GHLAPVWDVQFAPRGYYFATASHDQTARLWST  522 (707)
T ss_pred             CCCceeeeeecccccceeeccCCcceeeeecccceeEEEec-------CCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence            99999999999999999999999999999999887655544       37889999999999999999999999999999


Q ss_pred             CCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeC
Q 016257          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (392)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (392)
                      ....+.+.+.+|-..|.|+.|+|+..++++||.|.++++||+.+|..++.+.+|. .+|.+++|+|+|.+     +++++
T Consensus       523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~-~~V~al~~Sp~Gr~-----LaSg~  596 (707)
T KOG0263|consen  523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK-GPVTALAFSPCGRY-----LASGD  596 (707)
T ss_pred             ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC-CceEEEEEcCCCce-----Eeecc
Confidence            9988888888898999999999999999999999999999999999999998765 58999999999998     89999


Q ss_pred             CccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 016257          222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (392)
Q Consensus       222 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  276 (392)
                      .|+.|.+||+.+++.+..+.+|.+.|.++.||.+|..||+|+.|++|++||+...
T Consensus       597 ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  597 EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            9999999999999999999999999999999999999999999999999998753

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.2e-37  Score=242.82  Aligned_cols=284  Identities=17%  Similarity=0.203  Sum_probs=230.9

Q ss_pred             EEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCc
Q 016257           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (392)
Q Consensus        56 ~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  135 (392)
                      ...+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++..........      ..|.++|..+.|.+|++.|++++.|.+
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l------kgHsgAVM~l~~~~d~s~i~S~gtDk~  113 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL------KGHSGAVMELHGMRDGSHILSCGTDKT  113 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee------ccccceeEeeeeccCCCEEEEecCCce
Confidence            34578999999999999999999999999999999976543211111      148999999999999999999999999


Q ss_pred             EEEEeCCCCceeecccCCCCcEEEEEecCCCC-eEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE
Q 016257          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (392)
Q Consensus       136 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (392)
                      ++.||+++|+...+...|.+-+..+.-+.-|. ++.+++.|+++++||+++...++++....  .++++.|..++..   
T Consensus       114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky--qltAv~f~d~s~q---  188 (338)
T KOG0265|consen  114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY--QLTAVGFKDTSDQ---  188 (338)
T ss_pred             EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce--eEEEEEecccccc---
Confidence            99999999999999999988888888554454 56678899999999999999988886443  6999999999988   


Q ss_pred             EEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce---e-eeeeecccc---
Q 016257          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME---I-NHWSKRLHL---  287 (392)
Q Consensus       215 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---~-~~~~~~~~~---  287 (392)
                        +.+++-|+.|++||++.......+.+|..+|+.+..+|+|.++.+-+.|.++++||++...   . +..+ .+|.   
T Consensus       189 --v~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if-~g~~hnf  265 (338)
T KOG0265|consen  189 --VISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIF-QGHIHNF  265 (338)
T ss_pred             --eeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEe-ecchhhh
Confidence              8999999999999999999999999999999999999999999999999999999998532   2 3322 2331   


Q ss_pred             CcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccce-eee--eeeeeeeeeceEEEEeeecceeee
Q 016257          288 GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEW-QIY--SLLLALFLASAVVFYIFFENSDSF  353 (392)
Q Consensus       288 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~d~~i~~  353 (392)
                      +.....++|+|+++.+.+|+.|..+++|+.....-+-.+ ..+  .....+......+.+++.|.+|++
T Consensus       266 eknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  266 EKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             hhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            234557789999999999999999999998764322222 111  112223335567777788888876

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.2e-36  Score=245.54  Aligned_cols=321  Identities=15%  Similarity=0.159  Sum_probs=261.8

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ..+|++++-+|+.   .++++|++      |+.-.+|...        +......+.+|++.|+++.|+.+|.+||||..
T Consensus        64 ~~svFavsl~P~~---~l~aTGGg------DD~AflW~~~--------~ge~~~eltgHKDSVt~~~FshdgtlLATGdm  126 (399)
T KOG0296|consen   64 TDSVFAVSLHPNN---NLVATGGG------DDLAFLWDIS--------TGEFAGELTGHKDSVTCCSFSHDGTLLATGDM  126 (399)
T ss_pred             CCceEEEEeCCCC---ceEEecCC------CceEEEEEcc--------CCcceeEecCCCCceEEEEEccCceEEEecCC
Confidence            4689999999965   68999888      5667788776        33355778999999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      +|.|+||+..++.....+..       .-..+.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+|..++++=.|.
T Consensus       127 sG~v~v~~~stg~~~~~~~~-------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~  199 (399)
T KOG0296|consen  127 SGKVLVFKVSTGGEQWKLDQ-------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI  199 (399)
T ss_pred             CccEEEEEcccCceEEEeec-------ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccccc
Confidence            99999999999876555531       24578899999999999999999999999999877777888888899999999


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec--
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR--  241 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~--  241 (392)
                      |+|+.++++..||+|++|++.++.++..+.........++.++..+..     ++.+..++.+++-+..+++.+....  
T Consensus       200 pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~-----~~~g~~e~~~~~~~~~sgKVv~~~n~~  274 (399)
T KOG0296|consen  200 PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGST-----LTKGNSEGVACGVNNGSGKVVNCNNGT  274 (399)
T ss_pred             CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccce-----eEeccCCccEEEEccccceEEEecCCC
Confidence            999999999999999999999999999887555556788888888886     7888889999888888887765554  


Q ss_pred             ------ccCCCcEE---EEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeE
Q 016257          242 ------LLRKPASV---LSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGA  312 (392)
Q Consensus       242 ------~~~~~v~~---~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  312 (392)
                            .+...+.+   +.++..=.+.|+|+-||+|.|||+...++....  .| +.+|..+.|-+ ..+|++++.+|.|
T Consensus       275 ~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c--~h-e~~V~~l~w~~-t~~l~t~c~~g~v  350 (399)
T KOG0296|consen  275 VPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC--EH-EDGVTKLKWLN-TDYLLTACANGKV  350 (399)
T ss_pred             CccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec--cC-CCceEEEEEcC-cchheeeccCceE
Confidence                  23333444   455555678899999999999999988877665  56 78899999998 6899999999999


Q ss_pred             EEEEeecCccccce---eeeeeeeeeeeeceEEEEeeecceeeeeccc
Q 016257          313 MITKLTVPADWKEW---QIYSLLLALFLASAVVFYIFFENSDSFWNFP  357 (392)
Q Consensus       313 ~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~  357 (392)
                      ++||.+++.....+   +..............+++++.|++.+|++++
T Consensus       351 ~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  351 RQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            99999987654433   1111122222355678888899999998764

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=7.6e-36  Score=256.66  Aligned_cols=281  Identities=21%  Similarity=0.323  Sum_probs=240.7

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ..+|++++|+|++.   ++++|+.      ++.+.+|.++..        .....+..|...+..+.|+|+++.+++++.
T Consensus         9 ~~~i~~~~~~~~~~---~l~~~~~------~g~i~i~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~   71 (289)
T cd00200           9 TGGVTCVAFSPDGK---LLATGSG------DGTIKVWDLETG--------ELLRTLKGHTGPVRDVAASADGTYLASGSS   71 (289)
T ss_pred             CCCEEEEEEcCCCC---EEEEeec------CcEEEEEEeeCC--------CcEEEEecCCcceeEEEECCCCCEEEEEcC
Confidence            57899999999863   4554443      667999988733        244567788999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      ++.+++|++.+.+....+.       .|...+.++.|+++++++++++.++.+++||+++++....+..+...+.++.|+
T Consensus        72 ~~~i~i~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~  144 (289)
T cd00200          72 DKTIRLWDLETGECVRTLT-------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS  144 (289)
T ss_pred             CCeEEEEEcCcccceEEEe-------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEc
Confidence            9999999998765433332       255689999999998888888889999999999888877777777789999999


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeeccc
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~  243 (392)
                      |++.++++++.|+.+++||+++++....+..+ ...+.++.|+|++..     +++++.++.+.+||++.++.+..+..+
T Consensus       145 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~-----l~~~~~~~~i~i~d~~~~~~~~~~~~~  218 (289)
T cd00200         145 PDGTFVASSSQDGTIKLWDLRTGKCVATLTGH-TGEVNSVAFSPDGEK-----LLSSSSDGTIKLWDLSTGKCLGTLRGH  218 (289)
T ss_pred             CcCCEEEEEcCCCcEEEEEccccccceeEecC-ccccceEEECCCcCE-----EEEecCCCcEEEEECCCCceecchhhc
Confidence            99998988888999999999988888877754 447999999999976     677777999999999998888888788


Q ss_pred             CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEE
Q 016257          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (392)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  316 (392)
                      ...+.+++|+|++.++++++.||.|++||+.+++....+. .| ...|.+++|+|++++|++++.||.+++|+
T Consensus       219 ~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         219 ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GH-TNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-cc-CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            8899999999999999988889999999999888777764 67 78999999999999999999999999995

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.3e-37  Score=268.92  Aligned_cols=330  Identities=16%  Similarity=0.213  Sum_probs=259.7

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC--eEEEE
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD--DFVCS   81 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~--~l~~~   81 (392)
                      .+||.-++|+|.+   .++++|+.      ++.+++|++.        ...+.+.|+||.+.|.++.|+|+-+  .|++|
T Consensus       105 e~Pvi~ma~~~~g---~LlAtgga------D~~v~VWdi~--------~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg  167 (775)
T KOG0319|consen  105 EAPVITMAFDPTG---TLLATGGA------DGRVKVWDIK--------NGYCTHSFKGHGGVVSSLLFHPHWNRWLLASG  167 (775)
T ss_pred             CCCeEEEEEcCCC---ceEEeccc------cceEEEEEee--------CCEEEEEecCCCceEEEEEeCCccchhheeec
Confidence            6899999999988   57887666      7889999998        7788899999999999999999765  58899


Q ss_pred             eCCCeEEEEEEeCCcc-ceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecc----------
Q 016257           82 TTNGGCKLFEVYGGAT-DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE----------  150 (392)
Q Consensus        82 ~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------  150 (392)
                      ..|+++++||+.+... .....       .|.+.|++++|++|+..+++++.|..+.+||+.+.+.....          
T Consensus       168 ~~D~~v~vwnl~~~~tcl~~~~-------~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv  240 (775)
T KOG0319|consen  168 ATDGTVRVWNLNDKRTCLHTMI-------LHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVV  240 (775)
T ss_pred             CCCceEEEEEcccCchHHHHHH-------hhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEE
Confidence            9999999999986653 11111       37788999999999888888888888888887432211000          


Q ss_pred             --------------------------------------------------------------------------------
Q 016257          151 --------------------------------------------------------------------------------  150 (392)
Q Consensus       151 --------------------------------------------------------------------------------  150 (392)
                                                                                                      
T Consensus       241 ~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~iv  320 (775)
T KOG0319|consen  241 RLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIV  320 (775)
T ss_pred             EechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhc
Confidence                                                                                            


Q ss_pred             -----------------------------------------cCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee-
Q 016257          151 -----------------------------------------PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-  188 (392)
Q Consensus       151 -----------------------------------------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~-  188 (392)
                                                               .+|...|.+++...+|.+|++|+.|.++++|.++++.. 
T Consensus       321 G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~  400 (775)
T KOG0319|consen  321 GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK  400 (775)
T ss_pred             CCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch
Confidence                                                     44555677787556678999999999999998854332 


Q ss_pred             ---eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee---------eeeecccCCCcEEEEECCCC
Q 016257          189 ---WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---------IGHKRLLRKPASVLSISLDG  256 (392)
Q Consensus       189 ---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---------~~~~~~~~~~v~~~~~s~~~  256 (392)
                         +....+| ...|.+++++..+..    ++++++.|.++++|++...+.         ......|+..|++++++|+.
T Consensus       401 ~~~~a~~~gH-~~svgava~~~~~as----ffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd  475 (775)
T KOG0319|consen  401 SLCVAQANGH-TNSVGAVAGSKLGAS----FFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND  475 (775)
T ss_pred             hhhhhhhccc-ccccceeeecccCcc----EEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC
Confidence               2333344 457999999766654    279999999999999986221         12345688999999999999


Q ss_pred             CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccccee--eeeeee-
Q 016257          257 KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQ--IYSLLL-  333 (392)
Q Consensus       257 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~~-  333 (392)
                      +++|||+.|.+.+||+++.......+ .+| ...|+++.|+|..+.++++|.|++|+||.+..-.-.+.+.  ...... 
T Consensus       476 kLiAT~SqDktaKiW~le~~~l~~vL-sGH-~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra  553 (775)
T KOG0319|consen  476 KLIATGSQDKTAKIWDLEQLRLLGVL-SGH-TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRA  553 (775)
T ss_pred             ceEEecccccceeeecccCceEEEEe-eCC-ccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEee
Confidence            99999999999999999988888777 799 9999999999999999999999999999998665544432  111222 


Q ss_pred             eeeeeceEEEEeeecceeeeecccccccccC
Q 016257          334 ALFLASAVVFYIFFENSDSFWNFPVARNQHG  364 (392)
Q Consensus       334 ~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~  364 (392)
                      .+......+++++.||-+++|++.+++++..
T Consensus       554 ~F~~~~~qliS~~adGliKlWnikt~eC~~t  584 (775)
T KOG0319|consen  554 SFIRNGKQLISAGADGLIKLWNIKTNECEMT  584 (775)
T ss_pred             eeeeCCcEEEeccCCCcEEEEeccchhhhhh
Confidence            2233455788889999999999999987653

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.6e-36  Score=238.82  Aligned_cols=282  Identities=16%  Similarity=0.184  Sum_probs=238.0

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .|.|+.+.|+|++   .++++|+.      |..|.+|+...+.++..       .+++|.++|..+.|.+|++.|++++.
T Consensus        47 ~geI~~~~F~P~g---s~~aSgG~------Dr~I~LWnv~gdceN~~-------~lkgHsgAVM~l~~~~d~s~i~S~gt  110 (338)
T KOG0265|consen   47 KGEIYTIKFHPDG---SCFASGGS------DRAIVLWNVYGDCENFW-------VLKGHSGAVMELHGMRDGSHILSCGT  110 (338)
T ss_pred             cceEEEEEECCCC---CeEeecCC------cceEEEEecccccccee-------eeccccceeEeeeeccCCCEEEEecC
Confidence            5789999999988   56776665      67799999776655543       47799999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCC-CEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~  162 (392)
                      |.+++.||.++++...+...       |..-|+++.-+.-| .++.+++.|+++++||+++...+..+ ...-+++++.|
T Consensus       111 Dk~v~~wD~~tG~~~rk~k~-------h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-~~kyqltAv~f  182 (338)
T KOG0265|consen  111 DKTVRGWDAETGKRIRKHKG-------HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-ENKYQLTAVGF  182 (338)
T ss_pred             CceEEEEecccceeeehhcc-------ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc-ccceeEEEEEe
Confidence            99999999999987665543       67788888855544 46778899999999999987776443 34458999999


Q ss_pred             cCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc----eeee
Q 016257          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----NKIG  238 (392)
Q Consensus       163 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~  238 (392)
                      ..++..+++|+-|+.|++||++.+.....+.++.+ +|+.+..+|+|..     +.+.+.|.++++||++..    .++.
T Consensus       183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~-----llsnsMd~tvrvwd~rp~~p~~R~v~  256 (338)
T KOG0265|consen  183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSF-----LLSNSMDNTVRVWDVRPFAPSQRCVK  256 (338)
T ss_pred             cccccceeeccccCceeeeccccCcceEEeecccC-ceeeEEeccCCCc-----cccccccceEEEEEecccCCCCceEE
Confidence            99999999999999999999999999999988765 8999999999998     799999999999999853    3344


Q ss_pred             eecccC----CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEE
Q 016257          239 HKRLLR----KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI  314 (392)
Q Consensus       239 ~~~~~~----~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  314 (392)
                      .+.++.    ......+|+|++..+.+|+.|..+++||......+..+ .+| .+.|.++.|+|...+|.+++.|.+|++
T Consensus       257 if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl-pGh-~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  257 IFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL-PGH-YGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             EeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc-CCc-ceeEEEeeecCCCcEEEEeccCceeEe
Confidence            555442    34456799999999999999999999999888877776 689 999999999999999999999999987


Q ss_pred             EEe
Q 016257          315 TKL  317 (392)
Q Consensus       315 w~~  317 (392)
                      =.+
T Consensus       335 gei  337 (338)
T KOG0265|consen  335 GEI  337 (338)
T ss_pred             ecc
Confidence            543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.4e-36  Score=274.29  Aligned_cols=287  Identities=18%  Similarity=0.272  Sum_probs=243.2

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ...|.|+.|++++..   ++.++      .++.+.+|.......      .....+.+|...|.+++|+|+++++++++.
T Consensus       159 ~~sv~~~~fs~~g~~---l~~~~------~~~~i~~~~~~~~~~------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~  223 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRA---LAAAS------SDGLIRIWKLEGIKS------NLLRELSGHTRGVSDVAFSPDGSYLLSGSD  223 (456)
T ss_pred             cCceEEEEEcCCCCe---EEEcc------CCCcEEEeecccccc------hhhccccccccceeeeEECCCCcEEEEecC
Confidence            357899999999854   44333      467788998843221      233455899999999999999999999999


Q ss_pred             CCeEEEEEEeCC-ccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257           84 NGGCKLFEVYGG-ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (392)
Q Consensus        84 d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~  162 (392)
                      |++++|||++.. .....+.       .|...|++++|+|+++++++|+.|++|++||++++++...+..|.+.|++++|
T Consensus       224 D~tiriwd~~~~~~~~~~l~-------gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f  296 (456)
T KOG0266|consen  224 DKTLRIWDLKDDGRNLKTLK-------GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAF  296 (456)
T ss_pred             CceEEEeeccCCCeEEEEec-------CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEE
Confidence            999999999444 3333333       38899999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeEEEEcCCCcEEEEECCCCe--eeEEEecCCCc-ceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeee
Q 016257          163 SLDSEFLATTSTDGSARIWKTEDGV--AWTFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (392)
Q Consensus       163 ~~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~  239 (392)
                      ++++++|++++.|+.|++||+.++.  +...+..+... +++++.|+|++.+     ++++..|+.+++||++.+..+..
T Consensus       297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~-----ll~~~~d~~~~~w~l~~~~~~~~  371 (456)
T KOG0266|consen  297 SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY-----LLSASLDRTLKLWDLRSGKSVGT  371 (456)
T ss_pred             CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE-----EEEecCCCeEEEEEccCCcceee
Confidence            9999999999999999999999998  55666665554 6999999999998     89999999999999999999888


Q ss_pred             ecccCCCc---EEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEe--CCCeEEE
Q 016257          240 KRLLRKPA---SVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS--KEWGAMI  314 (392)
Q Consensus       240 ~~~~~~~v---~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i  314 (392)
                      ...|...+   .+...++.++++++|+.|+.|++||+.++..+..+ .+|....+..++++|...++++++  .|+.+++
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l-~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~  450 (456)
T KOG0266|consen  372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL-EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRL  450 (456)
T ss_pred             ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh-cCCCCCceeccccCCCcCeeeecCcCCCceEEE
Confidence            88887643   34455789999999999999999999998877766 455467889999999999999998  7899999


Q ss_pred             EEee
Q 016257          315 TKLT  318 (392)
Q Consensus       315 w~~~  318 (392)
                      |..+
T Consensus       451 w~~~  454 (456)
T KOG0266|consen  451 WKYD  454 (456)
T ss_pred             ecCC
Confidence            9764

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.6e-35  Score=228.89  Aligned_cols=283  Identities=14%  Similarity=0.167  Sum_probs=226.7

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEe-eCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-DESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      +++..++|+|-..  .++++++.      +..|++|.... +.    .-.+...+ .+|+..|.+++|+|.|++|++++.
T Consensus        15 ~r~W~~awhp~~g--~ilAscg~------Dk~vriw~~~~-~~----s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF   81 (312)
T KOG0645|consen   15 DRVWSVAWHPGKG--VILASCGT------DKAVRIWSTSS-GD----SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF   81 (312)
T ss_pred             CcEEEEEeccCCc--eEEEeecC------CceEEEEecCC-CC----cEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence            4799999999722  47777666      67799999873 21    22333334 479999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC---ceeecccCCCCcEEEE
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL---RIILDEPKAHKSVLDM  160 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~i  160 (392)
                      |.++.||.-..++....-     ..-.|...|.+++|+++|++||+++.|..|.||.+..+   ++...+..|...|..+
T Consensus        82 D~t~~Iw~k~~~efecv~-----~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V  156 (312)
T KOG0645|consen   82 DATVVIWKKEDGEFECVA-----TLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHV  156 (312)
T ss_pred             cceEEEeecCCCceeEEe-----eeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEE
Confidence            999999987755432211     11148899999999999999999999999999998744   3556677888899999


Q ss_pred             EecCCCCeEEEEcCCCcEEEEECCC---CeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceee
Q 016257          161 DFSLDSEFLATTSTDGSARIWKTED---GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI  237 (392)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~vwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~  237 (392)
                      .|+|...+|++++.|.+|++|+-..   -.+.+++..++. .|.+++|++.|..     ++++++|++++||-..+.   
T Consensus       157 ~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~r-----l~s~sdD~tv~Iw~~~~~---  227 (312)
T KOG0645|consen  157 IWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSR-----LVSCSDDGTVSIWRLYTD---  227 (312)
T ss_pred             EEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCce-----EEEecCCcceEeeeeccC---
Confidence            9999999999999999999998762   256778877655 7999999999987     899999999999986632   


Q ss_pred             eeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCc------eeeeeeeccccCcceEEEEEeeC-CCeEEEEeCCC
Q 016257          238 GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM------EINHWSKRLHLGTSIALVEFCPT-QRVVLTASKEW  310 (392)
Q Consensus       238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg  310 (392)
                       ....|...+..++|.  ...|++++.|+.|++|.-...      +++......| +..|+++.|.|. ...|++|+.||
T Consensus       228 -~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH-e~dVNsV~w~p~~~~~L~s~~DDG  303 (312)
T KOG0645|consen  228 -LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH-EVDVNSVQWNPKVSNRLASGGDDG  303 (312)
T ss_pred             -cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc-ccccceEEEcCCCCCceeecCCCc
Confidence             223456789999998  568999999999999976542      2223334578 779999999995 56899999999


Q ss_pred             eEEEEEee
Q 016257          311 GAMITKLT  318 (392)
Q Consensus       311 ~i~iw~~~  318 (392)
                      .+++|.+.
T Consensus       304 ~v~~W~l~  311 (312)
T KOG0645|consen  304 IVNFWELE  311 (312)
T ss_pred             eEEEEEec
Confidence            99999875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.9e-35  Score=226.95  Aligned_cols=261  Identities=12%  Similarity=0.168  Sum_probs=215.5

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .+.|..+...|+...   ++.++       ...|++|++...      ++....++.+|...|+++.|..+|+++++|++
T Consensus        40 dsqVNrLeiTpdk~~---LAaa~-------~qhvRlyD~~S~------np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgse  103 (311)
T KOG0315|consen   40 DSQVNRLEITPDKKD---LAAAG-------NQHVRLYDLNSN------NPNPVATFEGHTKNVTAVGFQCDGRWMYTGSE  103 (311)
T ss_pred             ccceeeEEEcCCcch---hhhcc-------CCeeEEEEccCC------CCCceeEEeccCCceEEEEEeecCeEEEecCC
Confidence            456777888887743   44333       345889988754      44466789999999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCC-CcEEEEEe
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDF  162 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~i~~  162 (392)
                      ||+++|||++......        .+++.++|+++..+|+...|++|..+|.|++||+.+..+...+.... ..|.++..
T Consensus       104 Dgt~kIWdlR~~~~qR--------~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v  175 (311)
T KOG0315|consen  104 DGTVKIWDLRSLSCQR--------NYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTV  175 (311)
T ss_pred             CceEEEEeccCcccch--------hccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEE
Confidence            9999999998855332        23467899999999999999999999999999999876655554443 48999999


Q ss_pred             cCCCCeEEEEcCCCcEEEEECCCC------eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc-e
Q 016257          163 SLDSEFLATTSTDGSARIWKTEDG------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-N  235 (392)
Q Consensus       163 ~~~~~~l~~~~~d~~i~vwd~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~-~  235 (392)
                      .|||.+++.+...|..++|++-..      +++.+++.|. ..+..+.+||++++     +++++.|.+++||+.+.. +
T Consensus       176 ~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~-~~il~C~lSPd~k~-----lat~ssdktv~iwn~~~~~k  249 (311)
T KOG0315|consen  176 MPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN-GHILRCLLSPDVKY-----LATCSSDKTVKIWNTDDFFK  249 (311)
T ss_pred             cCCCcEEEEecCCccEEEEEccCCCccccceEhhheeccc-ceEEEEEECCCCcE-----EEeecCCceEEEEecCCcee
Confidence            999999999999999999998654      3444555554 47999999999998     899999999999999987 5


Q ss_pred             eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEE
Q 016257          236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF  296 (392)
Q Consensus       236 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  296 (392)
                      ....+.+|...+...+||.||.||++|+.|+.+++||+..++.++.. .+| .....+++.
T Consensus       250 le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy-~gh-~K~~vc~~l  308 (311)
T KOG0315|consen  250 LELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY-QGH-HKAAVCVAL  308 (311)
T ss_pred             eEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec-CCc-ccccEEEEe
Confidence            55677888899999999999999999999999999999999988876 566 555555554

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.5e-35  Score=267.59  Aligned_cols=290  Identities=19%  Similarity=0.220  Sum_probs=235.9

Q ss_pred             EEEeeCC-CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC
Q 016257           56 TYVFDES-EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (392)
Q Consensus        56 ~~~~~~h-~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (392)
                      ...+.+| ...|.++.|+|+|+.+++++.++.+++|+....+.  ...   .....|...|..++|+|+++++++++.|+
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~~---~~l~~h~~~v~~~~fs~d~~~l~s~s~D~  225 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--NLL---RELSGHTRGVSDVAFSPDGSYLLSGSDDK  225 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--hhh---ccccccccceeeeEECCCCcEEEEecCCc
Confidence            4445444 78999999999999999999999999999965552  011   11135888999999999999999999999


Q ss_pred             cEEEEeC-CCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcce
Q 016257          135 HLRIMHW-PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (392)
Q Consensus       135 ~i~i~d~-~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (392)
                      +|++||+ ..+..+..+.+|...|++++|+|+++++++|+.|++|++||++++++...+..|.. .|.+++|++++..  
T Consensus       226 tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~--  302 (456)
T KOG0266|consen  226 TLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-GISGLAFSPDGNL--  302 (456)
T ss_pred             eEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-ceEEEEECCCCCE--
Confidence            9999999 45578888889999999999999999999999999999999999999999988766 7999999999997  


Q ss_pred             EEEEEEeCCccEEEEEeCCCce--eeeeecccCC--CcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCc
Q 016257          214 LFCTVQRGDKALLAVYDISTWN--KIGHKRLLRK--PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT  289 (392)
Q Consensus       214 ~~~~~~~~~d~~i~v~d~~~~~--~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  289 (392)
                         +++++.|+.|++||+.++.  +...+..+..  +++++.|+|+++++++++.|+.+++||+..++..... .+|...
T Consensus       303 ---l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~-~~~~~~  378 (456)
T KOG0266|consen  303 ---LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY-TGHSNL  378 (456)
T ss_pred             ---EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee-cccCCc
Confidence               7888999999999999998  4555555544  4999999999999999999999999999999888776 455243


Q ss_pred             --ceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceee----eeeeeeeeeeceEEEEee--ecceeeeeccc
Q 016257          290 --SIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI----YSLLLALFLASAVVFYIF--FENSDSFWNFP  357 (392)
Q Consensus       290 --~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~d~~i~~W~~~  357 (392)
                        .+.+...++.++++++|+.|+.|++|++...........    .............+++.+  .|+.+++|...
T Consensus       379 ~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  379 VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence              555666788999999999999999999986544332211    112222233444555555  68899999864

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.4e-37  Score=249.69  Aligned_cols=275  Identities=13%  Similarity=0.181  Sum_probs=229.8

Q ss_pred             CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC
Q 016257           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (392)
Q Consensus        62 h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~  141 (392)
                      ....|+|+.+  |...+++|..|++|+|||..+..+...+.       .|.+.|.|+.|.  .+.|++|+.|.+|++||+
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~-------GHtGSVLCLqyd--~rviisGSSDsTvrvWDv  264 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILT-------GHTGSVLCLQYD--ERVIVSGSSDSTVRVWDV  264 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhh-------cCCCcEEeeecc--ceEEEecCCCceEEEEec
Confidence            3567999999  55689999999999999998877655544       488999999995  559999999999999999


Q ss_pred             CCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeee--EEEecCCCcceEEEEecCCCCcceEEEEEE
Q 016257          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW--TFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (392)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (392)
                      ++++++..+..|...|..+.|+  +.++++++.|.++.+||+.....+  .....+|...|..+.|+..  +     +++
T Consensus       265 ~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k--y-----IVs  335 (499)
T KOG0281|consen  265 NTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--Y-----IVS  335 (499)
T ss_pred             cCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc--e-----EEE
Confidence            9999999999999999999998  569999999999999999865432  1222345567999988754  4     799


Q ss_pred             eCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeC
Q 016257          220 RGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (392)
Q Consensus       220 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  299 (392)
                      ++.|.+|++|++.+++.+..+.+|...|.|+.+  .|+++++|+.|.+|++||+..|.+++.+ .+| +.-|.++.|  |
T Consensus       336 ASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvL-eGH-EeLvRciRF--d  409 (499)
T KOG0281|consen  336 ASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL-EGH-EELVRCIRF--D  409 (499)
T ss_pred             ecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHH-hch-HHhhhheee--c
Confidence            999999999999999999999999999998886  5899999999999999999999999887 699 999999999  5


Q ss_pred             CCeEEEEeCCCeEEEEEeecCccccce----------eeeeeeeeeeeeceEEEEeeecceeeeecccccccc
Q 016257          300 QRVVLTASKEWGAMITKLTVPADWKEW----------QIYSLLLALFLASAVVFYIFFENSDSFWNFPVARNQ  362 (392)
Q Consensus       300 ~~~l~~~~~dg~i~iw~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~  362 (392)
                      .+.+++|+.||+|++|++......+.-          ...-....+.+..-.+++.+.|.+|-+||+-.+...
T Consensus       410 ~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  410 NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCcc
Confidence            678999999999999999876544211          111133444556778888899999999999876543

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=8.3e-36  Score=240.21  Aligned_cols=285  Identities=13%  Similarity=0.100  Sum_probs=248.8

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      -+-|+|+++.|-+   ..+++|+.      |.+++||++.        ...+..++.||-..|..+++|+--.||++++.
T Consensus       151 lgWVr~vavdP~n---~wf~tgs~------DrtikIwDla--------tg~LkltltGhi~~vr~vavS~rHpYlFs~ge  213 (460)
T KOG0285|consen  151 LGWVRSVAVDPGN---EWFATGSA------DRTIKIWDLA--------TGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE  213 (460)
T ss_pred             cceEEEEeeCCCc---eeEEecCC------CceeEEEEcc--------cCeEEEeecchhheeeeeeecccCceEEEecC
Confidence            3679999999987   56887777      6779999998        77888899999999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      |+.|+.||++..+.+....       .|-+.|.+++..|.-+.|++|+.|.++++||+++...+..+.+|..+|..+.+.
T Consensus       214 dk~VKCwDLe~nkvIR~Yh-------GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~  286 (460)
T KOG0285|consen  214 DKQVKCWDLEYNKVIRHYH-------GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQ  286 (460)
T ss_pred             CCeeEEEechhhhhHHHhc-------cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEee
Confidence            9999999999988665544       377899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeeccc
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~  243 (392)
                      |....+++|+.|++|++||++.++...++..|.. .+++++.+|....     +++++ ...|+-|++..+..+..+.+|
T Consensus       287 ~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~-----fASas-~dnik~w~~p~g~f~~nlsgh  359 (460)
T KOG0285|consen  287 PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENL-----FASAS-PDNIKQWKLPEGEFLQNLSGH  359 (460)
T ss_pred             cCCCceEEecCCceEEEeeeccCceeEeeecccc-eeeEEecCCchhh-----hhccC-CccceeccCCccchhhccccc
Confidence            9888999999999999999999999888876644 7999999999874     44444 456999999999999999999


Q ss_pred             CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee----cc--ccCcceEEEEEeeCCCeEEEEeCCCeEEEEEe
Q 016257          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK----RL--HLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (392)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  317 (392)
                      ...+.+++...|| ++++|+.+|.+.+||.+++...+...    .+  ..+..|.+.+|...|..|++|..|.+|++|.-
T Consensus       360 ~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke  438 (460)
T KOG0285|consen  360 NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE  438 (460)
T ss_pred             cceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence            9999999998776 77889999999999999876544331    11  12567999999999999999999999999987


Q ss_pred             ecC
Q 016257          318 TVP  320 (392)
Q Consensus       318 ~~~  320 (392)
                      ...
T Consensus       439 De~  441 (460)
T KOG0285|consen  439 DEH  441 (460)
T ss_pred             ccc
Confidence            644

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=6.9e-35  Score=250.71  Aligned_cols=283  Identities=19%  Similarity=0.257  Sum_probs=234.2

Q ss_pred             EeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEE
Q 016257           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (392)
Q Consensus        58 ~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  137 (392)
                      .+++|.++|.+++|+|++++|++++.+|.+++|++.+.+......       .|...+..+.|+|+++++++++.+|.|+
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~~~~i~   76 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK-------GHTGPVRDVAASADGTYLASGSSDKTIR   76 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe-------cCCcceeEEEECCCCCEEEEEcCCCeEE
Confidence            467899999999999999999999999999999998776333322       2566788999999999999999999999


Q ss_pred             EEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEE
Q 016257          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (392)
Q Consensus       138 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (392)
                      +|++++++....+..+...+.++.|+++++++++++.|+.+++||+++++....+..+ ...+.+++|+|++..     +
T Consensus        77 i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~-----l  150 (289)
T cd00200          77 LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH-TDWVNSVAFSPDGTF-----V  150 (289)
T ss_pred             EEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC-CCcEEEEEEcCcCCE-----E
Confidence            9999987777777777779999999999888888888999999999988888877744 447999999999774     5


Q ss_pred             EEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEe
Q 016257          218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (392)
Q Consensus       218 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  297 (392)
                      ++++.++.+.+||+++++.+..+..+...+.++.|+|+++.+++++.|+.|++||+++++....+ ..| ...+.++.|+
T Consensus       151 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~-~~~i~~~~~~  228 (289)
T cd00200         151 ASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL-RGH-ENGVNSVAFS  228 (289)
T ss_pred             EEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch-hhc-CCceEEEEEc
Confidence            66667999999999988888888888889999999999999999999999999999988877765 356 7799999999


Q ss_pred             eCCCeEEEEeCCCeEEEEEeecCccccceee-eeeeeeeee--eceEEEEeeecceeeeec
Q 016257          298 PTQRVVLTASKEWGAMITKLTVPADWKEWQI-YSLLLALFL--ASAVVFYIFFENSDSFWN  355 (392)
Q Consensus       298 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~d~~i~~W~  355 (392)
                      |++.++++++.||.+++|++........... ...+.....  ....+++++.|+.+++|+
T Consensus       229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            9988898888899999999985443322211 111122222  235777888999999996

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.4e-36  Score=266.43  Aligned_cols=316  Identities=15%  Similarity=0.196  Sum_probs=260.9

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      +..|..++|+|..+.  +++       +-..+.|++|++.        ...+...|.+|.++|..++|+|++.++++|+.
T Consensus         9 SsRvKglsFHP~rPw--ILt-------slHsG~IQlWDYR--------M~tli~rFdeHdGpVRgv~FH~~qplFVSGGD   71 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPW--ILT-------SLHSGVIQLWDYR--------MGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGD   71 (1202)
T ss_pred             cccccceecCCCCCE--EEE-------eecCceeeeehhh--------hhhHHhhhhccCCccceeeecCCCCeEEecCC
Confidence            678999999997754  333       3346779999997        55666779999999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      |-.|+||+.++.++..++..       |-..|+.+.|++.-.+|+++|.|-+|+||++.+.+++..+.+|..-|.|..|+
T Consensus        72 DykIkVWnYk~rrclftL~G-------HlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh  144 (1202)
T KOG0292|consen   72 DYKIKVWNYKTRRCLFTLLG-------HLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH  144 (1202)
T ss_pred             ccEEEEEecccceehhhhcc-------ccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence            99999999999988766654       78899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCe----------------------------eeEEEecCCCcceEEEEecCCCCcceEE
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGV----------------------------AWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~----------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (392)
                      |....++++|-|.+|++||+..-+                            .++.+..+|+..|.-++|+|.-..    
T Consensus       145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl----  220 (1202)
T KOG0292|consen  145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL----  220 (1202)
T ss_pred             CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce----
Confidence            999999999999999999985211                            122222344456999999998875    


Q ss_pred             EEEEeCCccEEEEEeCCCcee--eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEE
Q 016257          216 CTVQRGDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL  293 (392)
Q Consensus       216 ~~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~  293 (392)
                       +++|++|..|++|.+..-+.  +.+.++|.+.|+++-|+|...++++.++|++|++||+...+.++.+.+.  ...-+.
T Consensus       221 -iVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre--ndRFW~  297 (1202)
T KOG0292|consen  221 -IVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE--NDRFWI  297 (1202)
T ss_pred             -EEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeecc--CCeEEE
Confidence             79999999999999876543  4567889999999999999999999999999999999999988887544  578899


Q ss_pred             EEEeeCCCeEEEEeCCCeEEEEEeecCccccceeeeeeeeeeeeeceEEEEeeecceeeeeccccccccc
Q 016257          294 VEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVARNQH  363 (392)
Q Consensus       294 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~  363 (392)
                      ++-+|..+++++ +.|+.+.++.+....+  .         .++..+.+++.- |..|+..|+.+.+..+
T Consensus       298 laahP~lNLfAA-gHDsGm~VFkleRErp--a---------~~v~~n~LfYvk-d~~i~~~d~~t~~d~~  354 (1202)
T KOG0292|consen  298 LAAHPELNLFAA-GHDSGMIVFKLERERP--A---------YAVNGNGLFYVK-DRFIRSYDLRTQKDTA  354 (1202)
T ss_pred             EEecCCcceeee-ecCCceEEEEEcccCc--e---------EEEcCCEEEEEc-cceEEeeeccccccce
Confidence            999999886655 5677888988873322  1         123445566665 8889999988855443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1e-36  Score=254.44  Aligned_cols=281  Identities=17%  Similarity=0.230  Sum_probs=240.0

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCC
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~   85 (392)
                      .|.++.|.|-..  .|+.+|+      -|+.|+||++-.       ...+..++.+|..+|.+++|+++|..+++++.|+
T Consensus       216 gvsai~~fp~~~--hLlLS~g------mD~~vklW~vy~-------~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~  280 (503)
T KOG0282|consen  216 GVSAIQWFPKKG--HLLLSGG------MDGLVKLWNVYD-------DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR  280 (503)
T ss_pred             ccchhhhcccee--eEEEecC------CCceEEEEEEec-------CcceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence            588999999543  3555444      488899999864       3456678999999999999999999999999999


Q ss_pred             eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCC-CEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecC
Q 016257           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL  164 (392)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~  164 (392)
                      .+++||++++++...+..        ...+.|+.|.|++ +.+++|+.|+.|+.||+++++.+.++-.|-+.|..+.|-+
T Consensus       281 ~lKlwDtETG~~~~~f~~--------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~  352 (503)
T KOG0282|consen  281 FLKLWDTETGQVLSRFHL--------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD  352 (503)
T ss_pred             eeeeeccccceEEEEEec--------CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc
Confidence            999999999998777654        3467999999988 7899999999999999999999888888888999999999


Q ss_pred             CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce---eeeeec
Q 016257          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---KIGHKR  241 (392)
Q Consensus       165 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~  241 (392)
                      +|+++++++.|++++||+.+.+..+............++..+|++..     ++.-+.|+.|.+|.+...-   ....++
T Consensus       353 ~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~-----~~aQs~dN~i~ifs~~~~~r~nkkK~fe  427 (503)
T KOG0282|consen  353 EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW-----FAAQSMDNYIAIFSTVPPFRLNKKKRFE  427 (503)
T ss_pred             CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCe-----ehhhccCceEEEEecccccccCHhhhhc
Confidence            99999999999999999999888877766655556889999999997     7888889999999865322   223445


Q ss_pred             ccC--CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCC-eEEEEeCCCeEEEEE
Q 016257          242 LLR--KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITK  316 (392)
Q Consensus       242 ~~~--~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~  316 (392)
                      +|.  +.-..+.|||||.+|++|..||.+.+||.++-++...+ ..| .+++..+.|+|... .+|+++.||.|++|+
T Consensus       428 Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l-kah-~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  428 GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL-KAH-DQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc-ccC-CcceEEEEecCCCcceeEecccCceeEecC
Confidence            553  34567899999999999999999999999999988877 578 89999999999654 899999999999995

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.2e-34  Score=278.77  Aligned_cols=288  Identities=16%  Similarity=0.175  Sum_probs=225.4

Q ss_pred             eeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEE
Q 016257           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLR  137 (392)
Q Consensus        59 ~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~  137 (392)
                      +..|.+.|.+++|+|++++||+|+.|+.|+||++..................+...+.+++|++ ++.+|++++.||+|+
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~  558 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ  558 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence            4558999999999999999999999999999997542110000000011122456789999987 578999999999999


Q ss_pred             EEeCCCCceeecccCCCCcEEEEEecC-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecC-CCCcceEE
Q 016257          138 IMHWPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK-DGTKPFLF  215 (392)
Q Consensus       138 i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~  215 (392)
                      +||+.+++.+..+..|.+.|++++|+| ++.+|++|+.|++|++||++++..+..+..+  ..+.++.|++ ++..    
T Consensus       559 lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~--~~v~~v~~~~~~g~~----  632 (793)
T PLN00181        559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK--ANICCVQFPSESGRS----  632 (793)
T ss_pred             EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC--CCeEEEEEeCCCCCE----
Confidence            999999988888888888999999997 7889999999999999999999888887643  3689999965 5665    


Q ss_pred             EEEEeCCccEEEEEeCCCce-eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCc------eeeeeeeccccC
Q 016257          216 CTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM------EINHWSKRLHLG  288 (392)
Q Consensus       216 ~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~  288 (392)
                       +++++.|+.|++||++..+ .+..+..|...|.++.|. ++.+|++++.|+.|++||+..+      +.+..+ .+| .
T Consensus       633 -latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~-~gh-~  708 (793)
T PLN00181        633 -LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF-MGH-T  708 (793)
T ss_pred             -EEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE-cCC-C
Confidence             7899999999999998765 456677889999999997 7789999999999999999753      334444 578 8


Q ss_pred             cceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccccee----------------eeeeeeeeeeeceEEEEeeecceee
Q 016257          289 TSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQ----------------IYSLLLALFLASAVVFYIFFENSDS  352 (392)
Q Consensus       289 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~d~~i~  352 (392)
                      ..+..++|+|++.+|++|+.|+.|++|+...+.....+.                ..............+++++.||.|+
T Consensus       709 ~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~  788 (793)
T PLN00181        709 NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIK  788 (793)
T ss_pred             CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEE
Confidence            889999999999999999999999999976442211000                0011111122445778888999999


Q ss_pred             eecc
Q 016257          353 FWNF  356 (392)
Q Consensus       353 ~W~~  356 (392)
                      +|++
T Consensus       789 i~~~  792 (793)
T PLN00181        789 ILEM  792 (793)
T ss_pred             EEec
Confidence            9985

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=3e-36  Score=231.52  Aligned_cols=291  Identities=13%  Similarity=0.169  Sum_probs=242.4

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .-||..++|+|-.+.-.++++++..+      .--+-  +.+      +.....+|.||.+.|.....+.+...-|+++.
T Consensus        14 trpvvdl~~s~itp~g~flisa~kd~------~pmlr--~g~------tgdwigtfeghkgavw~~~l~~na~~aasaaa   79 (334)
T KOG0278|consen   14 TRPVVDLAFSPITPDGYFLISASKDG------KPMLR--NGD------TGDWIGTFEGHKGAVWSATLNKNATRAASAAA   79 (334)
T ss_pred             CcceeEEeccCCCCCceEEEEeccCC------Cchhc--cCC------CCCcEEeeeccCcceeeeecCchhhhhhhhcc
Confidence            34888899998543324555443321      11111  111      34456789999999999999988888899999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-eeecccCCCCcEEEEEe
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDF  162 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~i~~  162 (392)
                      |=+-++||.-++..+..        ++|..-|.+++|+.|.++|++|+.+..+||||++..+ +..++.+|.+.|..+.|
T Consensus        80 dftakvw~a~tgdelhs--------f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~w  151 (334)
T KOG0278|consen   80 DFTAKVWDAVTGDELHS--------FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLW  151 (334)
T ss_pred             cchhhhhhhhhhhhhhh--------hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEE
Confidence            99999999988874433        3577789999999999999999999999999997654 45667788889999999


Q ss_pred             cCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc
Q 016257          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (392)
Q Consensus       163 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~  242 (392)
                      ....+.|++++.|++|++||.++++.++++...+  +|+++..+++|.      +++-...+.|..||..+...++..+.
T Consensus       152 c~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~------ilTia~gssV~Fwdaksf~~lKs~k~  223 (334)
T KOG0278|consen  152 CHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGR------ILTIAYGSSVKFWDAKSFGLLKSYKM  223 (334)
T ss_pred             eccCceEEeeccCCceEEEEeccCcEEEEEecCC--CCcceeeccCCC------EEEEecCceeEEeccccccceeeccC
Confidence            9988899999999999999999999999998654  699999999999      47777788999999999888877664


Q ss_pred             cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                       ...|.+.+++|+...+++|++|..++.||..+++.+.....+| .++|.++.|+|+|...++|+.||+|++|.+...+.
T Consensus       224 -P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh-~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  224 -PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH-FGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             -ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC-CCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence             6689999999999999999999999999999999888766788 99999999999999999999999999999987665


Q ss_pred             ccce
Q 016257          323 WKEW  326 (392)
Q Consensus       323 ~~~~  326 (392)
                      +..|
T Consensus       302 ~~~~  305 (334)
T KOG0278|consen  302 YGLW  305 (334)
T ss_pred             hhhc
Confidence            5444

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=3.1e-34  Score=277.74  Aligned_cols=288  Identities=14%  Similarity=0.125  Sum_probs=225.4

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC-CCCeEEEEe
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST   82 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~~~~   82 (392)
                      .++|.+++|+|++.   ++++|+.      ++.|++|++................+. +...+.+++|+| ++.+|++++
T Consensus       483 ~~~V~~i~fs~dg~---~latgg~------D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~  552 (793)
T PLN00181        483 SNLVCAIGFDRDGE---FFATAGV------NKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSN  552 (793)
T ss_pred             CCcEEEEEECCCCC---EEEEEeC------CCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEe
Confidence            56799999999984   5665554      777999987532111000111122333 346899999987 478999999


Q ss_pred             CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEE
Q 016257           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (392)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~  161 (392)
                      .||+|++||+.+++....+.       .|.+.|.+++|+| ++.+|++|+.|++|++||++++..+..+. ++..+.++.
T Consensus       553 ~Dg~v~lWd~~~~~~~~~~~-------~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~~~~v~~v~  624 (793)
T PLN00181        553 FEGVVQVWDVARSQLVTEMK-------EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-TKANICCVQ  624 (793)
T ss_pred             CCCeEEEEECCCCeEEEEec-------CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-cCCCeEEEE
Confidence            99999999998776443332       3778999999997 78999999999999999999888776554 346799999


Q ss_pred             ec-CCCCeEEEEcCCCcEEEEECCCCe-eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc-----
Q 016257          162 FS-LDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-----  234 (392)
Q Consensus       162 ~~-~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~-----  234 (392)
                      |+ +++.+|++|+.|+.|++||+++.+ ....+..| ...|.++.|. ++..     +++++.|+.|++||++..     
T Consensus       625 ~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h-~~~V~~v~f~-~~~~-----lvs~s~D~~ikiWd~~~~~~~~~  697 (793)
T PLN00181        625 FPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH-SKTVSYVRFV-DSST-----LVSSSTDNTLKLWDLSMSISGIN  697 (793)
T ss_pred             EeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC-CCCEEEEEEe-CCCE-----EEEEECCCEEEEEeCCCCccccC
Confidence            95 478999999999999999998765 45555544 4579999997 4554     789999999999999743     


Q ss_pred             -eeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee------------ccccCcceEEEEEeeCCC
Q 016257          235 -NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK------------RLHLGTSIALVEFCPTQR  301 (392)
Q Consensus       235 -~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------~~~~~~~i~~~~~s~~~~  301 (392)
                       +++..+.+|...+.+++|+|++.+|++|+.|+.|++|+...........            ..+ ...|.+++|+|++.
T Consensus       698 ~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~V~~v~ws~~~~  776 (793)
T PLN00181        698 ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDA-SQFISSVCWRGQSS  776 (793)
T ss_pred             CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCC-CcEEEEEEEcCCCC
Confidence             4567788888999999999999999999999999999987654322110            123 45799999999999


Q ss_pred             eEEEEeCCCeEEEEEe
Q 016257          302 VVLTASKEWGAMITKL  317 (392)
Q Consensus       302 ~l~~~~~dg~i~iw~~  317 (392)
                      .|++|+.||.|+||++
T Consensus       777 ~lva~~~dG~I~i~~~  792 (793)
T PLN00181        777 TLVAANSTGNIKILEM  792 (793)
T ss_pred             eEEEecCCCcEEEEec
Confidence            9999999999999986

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.5e-35  Score=241.64  Aligned_cols=287  Identities=13%  Similarity=0.118  Sum_probs=235.2

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ..+|.-+.|++++++   +|+++.      |.+.-+|....+..     -.+..++.+|..+|..+.||||.++|++++.
T Consensus       224 tdEVWfl~FS~nGky---LAsaSk------D~Taiiw~v~~d~~-----~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~  289 (519)
T KOG0293|consen  224 TDEVWFLQFSHNGKY---LASASK------DSTAIIWIVVYDVH-----FKLKKTLVGHSQPVSYIMWSPDDRYLLACGF  289 (519)
T ss_pred             CCcEEEEEEcCCCee---EeeccC------CceEEEEEEecCcc-----eeeeeeeecccCceEEEEECCCCCeEEecCc
Confidence            346888999999954   776555      66678999886653     3456789999999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCC-CcEEEEEe
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDF  162 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~i~~  162 (392)
                      +..+.+||+.++.....+..      .+...+.+++|.|||..+++|+.|+.+..||++... .....+-. ..|.+++.
T Consensus       290 ~e~~~lwDv~tgd~~~~y~~------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlai  362 (519)
T KOG0293|consen  290 DEVLSLWDVDTGDLRHLYPS------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAI  362 (519)
T ss_pred             hHheeeccCCcchhhhhccc------CcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEE
Confidence            99999999999986544322      135688999999999999999999999999986533 22333322 36999999


Q ss_pred             cCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc
Q 016257          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (392)
Q Consensus       163 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~  242 (392)
                      ++||+++++.+.|..|++++.++......+..+  .++++...+.++++     +++.-.+..+.+||++..+.+..+.+
T Consensus       363 t~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~--~~its~~iS~d~k~-----~LvnL~~qei~LWDl~e~~lv~kY~G  435 (519)
T KOG0293|consen  363 TYDGKYVLLVTVDKKIRLYNREARVDRGLISEE--QPITSFSISKDGKL-----ALVNLQDQEIHLWDLEENKLVRKYFG  435 (519)
T ss_pred             cCCCcEEEEEecccceeeechhhhhhhcccccc--CceeEEEEcCCCcE-----EEEEcccCeeEEeecchhhHHHHhhc
Confidence            999999999999999999999877666555433  37999999999997     67777889999999998888888888


Q ss_pred             cCCCcEE--EEEC-CCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCC-eEEEEeCCCeEEEEEee
Q 016257          243 LRKPASV--LSIS-LDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLT  318 (392)
Q Consensus       243 ~~~~v~~--~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~  318 (392)
                      |...-.-  -+|- .+..++++|++|++|+||+..+++++..+ .+| ...|++++|+|... ++|++|+||+||||...
T Consensus       436 hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L-sGH-s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  436 HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL-SGH-SKTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee-cCC-cceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence            7654322  2343 35589999999999999999999999888 699 99999999999655 89999999999999876


Q ss_pred             cC
Q 016257          319 VP  320 (392)
Q Consensus       319 ~~  320 (392)
                      ..
T Consensus       514 ~~  515 (519)
T KOG0293|consen  514 DN  515 (519)
T ss_pred             cc
Confidence            43

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.6e-36  Score=252.06  Aligned_cols=290  Identities=14%  Similarity=0.139  Sum_probs=237.8

Q ss_pred             CCceEEEeeCCCCCeeEEEEcC-CCCeEEEEeCCCeEEEEEEeC-CccceeeccccCCCCCCCCCeEEEEecCCCCEEEE
Q 016257           52 SPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA  129 (392)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  129 (392)
                      +....+.+.||+..|+++.|.| .+.+|++++.|+.|+||++.. ++++..+.       .|..+|.+++|+++|..+++
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~-------gH~k~Vrd~~~s~~g~~fLS  275 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK-------GHRKPVRDASFNNCGTSFLS  275 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh-------cchhhhhhhhccccCCeeee
Confidence            3456678999999999999999 888999999999999999987 44443333       48899999999999999999


Q ss_pred             EeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCC-CeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCC
Q 016257          130 GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD  208 (392)
Q Consensus       130 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (392)
                      ++.|+.+++||+++|++...+.. ...++++.|+|++ +.+++|+.|+.|+.||+++++.++.+..+.+ .|..+.|-++
T Consensus       276 ~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg-~i~~i~F~~~  353 (503)
T KOG0282|consen  276 ASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG-AILDITFVDE  353 (503)
T ss_pred             eecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh-heeeeEEccC
Confidence            99999999999999999866543 3478999999988 7899999999999999999998888776654 7999999999


Q ss_pred             CCcceEEEEEEeCCccEEEEEeCCCceeeeeec-ccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeee--eeecc
Q 016257          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH--WSKRL  285 (392)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~  285 (392)
                      +.+     .+++++|+.+++|+.+..-+++... .......++..+|++++++.=+.|+.|.+|.+...-...  ....+
T Consensus       354 g~r-----FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG  428 (503)
T KOG0282|consen  354 GRR-----FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG  428 (503)
T ss_pred             Cce-----EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc
Confidence            998     8999999999999999876654433 234567789999999999999999999999875432211  12244


Q ss_pred             cc-CcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceee----eeeeeeeeeeceEEEEeeecceeeeec
Q 016257          286 HL-GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI----YSLLLALFLASAVVFYIFFENSDSFWN  355 (392)
Q Consensus       286 ~~-~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~i~~W~  355 (392)
                      |. .+.-..+.|||||++|++|+.||.+.+||.++.+....++.    .....-+......+++++.||.|++|+
T Consensus       429 h~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  429 HSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            52 45567899999999999999999999999997766554432    233344455677889999999999996

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.1e-33  Score=236.98  Aligned_cols=294  Identities=17%  Similarity=0.179  Sum_probs=241.0

Q ss_pred             CCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe
Q 016257           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (392)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  131 (392)
                      .+.....+.+|..+++-..|+|.|.++|+|...|.|+|||....+...+...+.     -.++|..++|+.|++.|++.+
T Consensus        48 ~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v-----~aG~I~Di~Wd~ds~RI~avG  122 (603)
T KOG0318|consen   48 NPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQV-----LAGPIKDISWDFDSKRIAAVG  122 (603)
T ss_pred             CccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeee-----cccccccceeCCCCcEEEEEe
Confidence            455566788999999999999999999999999999999987754332222111     358999999999999998876


Q ss_pred             C--CCcEEEEeCCCCceeecccCCCCcEEEEEecCCCC-eEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCC
Q 016257          132 V--DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD  208 (392)
Q Consensus       132 ~--dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (392)
                      +  +...+++-.+++..+.++.+|...|.+++|-|... .+++|++|++|.+|+=.--+...++..|+. -|+++.|+||
T Consensus       123 EGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hsk-FV~~VRysPD  201 (603)
T KOG0318|consen  123 EGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSK-FVNCVRYSPD  201 (603)
T ss_pred             cCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccc-ceeeEEECCC
Confidence            4  23344444557888888899999999999999765 599999999999998766666667766665 7999999999


Q ss_pred             CCcceEEEEEEeCCccEEEEEeCCCceeeeeec---ccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee---
Q 016257          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR---LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS---  282 (392)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---  282 (392)
                      |..     +++.+.|+++.+||-.+++.+..+.   .|.+.|.+++|+||+..+++++.|.+++|||+.+.++.+.+   
T Consensus       202 G~~-----Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~  276 (603)
T KOG0318|consen  202 GSR-----FATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMG  276 (603)
T ss_pred             CCe-----EEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecC
Confidence            997     8999999999999999999998887   89999999999999999999999999999999887655443   


Q ss_pred             ---------------------------------------eccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccc
Q 016257          283 ---------------------------------------KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADW  323 (392)
Q Consensus       283 ---------------------------------------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  323 (392)
                                                             ..+| ...|+++..+|++++|++|+.||.|.-|+...+..-
T Consensus       277 ~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GH-nK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~  355 (603)
T KOG0318|consen  277 STVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGH-NKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD  355 (603)
T ss_pred             CchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccc-ccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence                                                   3467 789999999999999999999999999999877655


Q ss_pred             cce--eeeeeeeeeeeec-eEEEEeeecceeeeeccc
Q 016257          324 KEW--QIYSLLLALFLAS-AVVFYIFFENSDSFWNFP  357 (392)
Q Consensus       324 ~~~--~~~~~~~~~~~~~-~~~~~~~~d~~i~~W~~~  357 (392)
                      +..  ...-.+.++...+ ..+++.++|.++++-++.
T Consensus       356 ~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~  392 (603)
T KOG0318|consen  356 RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLK  392 (603)
T ss_pred             ccccccccceEEEEeecCCCcEEEEecCCeEEEEecc
Confidence            432  1222333444444 788999999999999774

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-34  Score=252.78  Aligned_cols=287  Identities=16%  Similarity=0.185  Sum_probs=238.8

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      +..|.+|+|-.+..+...||+-        ...+++|...        ...+. .+.||++.|.++....+|.+|++|+.
T Consensus       323 ndEI~Dm~~lG~e~~~laVATN--------s~~lr~y~~~--------~~~c~-ii~GH~e~vlSL~~~~~g~llat~sK  385 (775)
T KOG0319|consen  323 NDEILDMKFLGPEESHLAVATN--------SPELRLYTLP--------TSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSK  385 (775)
T ss_pred             chhheeeeecCCccceEEEEeC--------CCceEEEecC--------CCceE-EEeCchhheeeeeecccCcEEEEecC
Confidence            4578888876544442334432        3347788543        22222 68999999999997678889999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCC-CEEEEEeCCCcEEEEeCCCCce-----ee----cccCC
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRI-----IL----DEPKA  153 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~-----~~----~~~~~  153 (392)
                      |.++++|.++++.......   .....|...|.+++++..+ ..|++++.|+++++|++...+.     ..    ....|
T Consensus       386 D~svilWr~~~~~~~~~~~---a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aH  462 (775)
T KOG0319|consen  386 DKSVILWRLNNNCSKSLCV---AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAH  462 (775)
T ss_pred             CceEEEEEecCCcchhhhh---hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhh
Confidence            9999999995544322222   1223588999999998744 5889999999999999975221     11    23456


Q ss_pred             CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (392)
Q Consensus       154 ~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~  233 (392)
                      .+.|++++.+|+.+++++||.|++.++|+++......++.+|.. .+.++.|+|..+.     +++++.|.+|+||.+.+
T Consensus       463 dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R-Gvw~V~Fs~~dq~-----laT~SgD~TvKIW~is~  536 (775)
T KOG0319|consen  463 DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR-GVWCVSFSKNDQL-----LATCSGDKTVKIWSIST  536 (775)
T ss_pred             cccccceEecCCCceEEecccccceeeecccCceEEEEeeCCcc-ceEEEEeccccce-----eEeccCCceEEEEEecc
Confidence            67999999999999999999999999999998889999988876 6999999999886     89999999999999999


Q ss_pred             ceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEE
Q 016257          234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAM  313 (392)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  313 (392)
                      ..+++++.+|...|..+.|-.+|+.|++++.||.|++|+++++++...+ ..| ...|++++-+|...++++|+.||.|.
T Consensus       537 fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl-D~H-~DrvWaL~~~~~~~~~~tgg~Dg~i~  614 (775)
T KOG0319|consen  537 FSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL-DAH-NDRVWALSVSPLLDMFVTGGGDGRII  614 (775)
T ss_pred             ceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh-hhc-cceeEEEeecCccceeEecCCCeEEE
Confidence            9999999999999999999999999999999999999999999999988 689 99999999999999999999999999


Q ss_pred             EEEee
Q 016257          314 ITKLT  318 (392)
Q Consensus       314 iw~~~  318 (392)
                      +|.=.
T Consensus       615 ~wkD~  619 (775)
T KOG0319|consen  615 FWKDV  619 (775)
T ss_pred             EeecC
Confidence            99654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-34  Score=247.28  Aligned_cols=281  Identities=12%  Similarity=0.141  Sum_probs=246.1

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      +-+|.|+.++|..+.  +++       +-..+.++||+++        +..+...+.-..-+|.+..|-+..+++++|+.
T Consensus        13 SdRVKsVd~HPtePw--~la-------~LynG~V~IWnye--------tqtmVksfeV~~~PvRa~kfiaRknWiv~GsD   75 (794)
T KOG0276|consen   13 SDRVKSVDFHPTEPW--ILA-------ALYNGDVQIWNYE--------TQTMVKSFEVSEVPVRAAKFIARKNWIVTGSD   75 (794)
T ss_pred             CCceeeeecCCCCce--EEE-------eeecCeeEEEecc--------cceeeeeeeecccchhhheeeeccceEEEecC
Confidence            568999999998765  333       2346679999998        55566667777889999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC-ceeecccCCCCcEEEEEe
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-RIILDEPKAHKSVLDMDF  162 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~i~~  162 (392)
                      |..|+||+..+.+....+..       |...|++++.+|...++++++.|-+|++||.+.. .+.+.+.+|..-|.+++|
T Consensus        76 D~~IrVfnynt~ekV~~FeA-------H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~f  148 (794)
T KOG0276|consen   76 DMQIRVFNYNTGEKVKTFEA-------HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAF  148 (794)
T ss_pred             CceEEEEecccceeeEEeec-------cccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEe
Confidence            99999999999987766654       7899999999999999999999999999999765 455667777779999999


Q ss_pred             cC-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec
Q 016257          163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (392)
Q Consensus       163 ~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~  241 (392)
                      +| |.+.+++++-|++|++|.+.+..+..++.+|.. .|.++.+-+.|...+   ++++++|..++|||..+..+++++.
T Consensus       149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpy---lIsgaDD~tiKvWDyQtk~CV~TLe  224 (794)
T KOG0276|consen  149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPY---LISGADDLTIKVWDYQTKSCVQTLE  224 (794)
T ss_pred             cCCCccceeeeeccccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcce---EEecCCCceEEEeecchHHHHHHhh
Confidence            99 778999999999999999999999999997765 699999999887665   7999999999999999999999999


Q ss_pred             ccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEE
Q 016257          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI  314 (392)
Q Consensus       242 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  314 (392)
                      +|...|..+.|+|.-.++++|++||+++||+..+.+....+.-+  ...+++++-.+.+..++.|.++|.|.+
T Consensus       225 GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  225 GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEeccCCcEEE
Confidence            99999999999999999999999999999999998877766322  678999999998888999988877754

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.7e-34  Score=249.48  Aligned_cols=329  Identities=14%  Similarity=0.137  Sum_probs=267.4

Q ss_pred             CCCCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCc-cccCCceEEEeeCCCCCeeEEEEcCCCCeEE
Q 016257            1 MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS-VYTSPLVTYVFDESEGDPMTIAVNPSGDDFV   79 (392)
Q Consensus         1 ~~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~   79 (392)
                      |....+|.++.|-|.+.....+++       -.+|.++.|.++..... ..........+.||...|.++++|.+...++
T Consensus       317 ir~~~kiks~dv~~~~~~~~~lv~-------l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~  389 (888)
T KOG0306|consen  317 IRTSAKIKSFDVTPSGGTENTLVL-------LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLA  389 (888)
T ss_pred             eechhheeEEEEEecCCcceeEEE-------eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeee
Confidence            345678999999997654333442       24788999999873322 2223345567889999999999999887777


Q ss_pred             EEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEE
Q 016257           80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD  159 (392)
Q Consensus        80 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~  159 (392)
                      +|+ .+.++||+..+.++..++..         +.+.+..|-|.++++++|...|.+.+||+.+...+.....|.+.|.+
T Consensus       390 Sga-~~SikiWn~~t~kciRTi~~---------~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWs  459 (888)
T KOG0306|consen  390 SGA-GESIKIWNRDTLKCIRTITC---------GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWS  459 (888)
T ss_pred             ecC-CCcEEEEEccCcceeEEecc---------ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceee
Confidence            765 45599999999988776643         47899999999999999999999999999999888888888899999


Q ss_pred             EEecCCCCeEEEEcCCCcEEEEECCC-----CeeeEEEec------CCCcceEEEEecCCCCcceEEEEEEeCCccEEEE
Q 016257          160 MDFSLDSEFLATTSTDGSARIWKTED-----GVAWTFLTR------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAV  228 (392)
Q Consensus       160 i~~~~~~~~l~~~~~d~~i~vwd~~~-----~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v  228 (392)
                      ++.+||++.+++|+.|.+|++||..-     +...+.+..      .-...|.|+.+|||+++     ++.+--|++++|
T Consensus       460 i~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~-----LaVsLLdnTVkV  534 (888)
T KOG0306|consen  460 ISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL-----LAVSLLDNTVKV  534 (888)
T ss_pred             eeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE-----EEEEeccCeEEE
Confidence            99999999999999999999999742     111111111      12346999999999997     788888999999


Q ss_pred             EeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeC
Q 016257          229 YDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK  308 (392)
Q Consensus       229 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  308 (392)
                      |-+++.+....+.+|.-||.|+.+|||++.++||+.|.+|++|-++-|.+.+.+ .+| ...|.++.|-|+..++.++|.
T Consensus       535 yflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~-fAH-dDSvm~V~F~P~~~~FFt~gK  612 (888)
T KOG0306|consen  535 YFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF-FAH-DDSVMSVQFLPKTHLFFTCGK  612 (888)
T ss_pred             EEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh-hcc-cCceeEEEEcccceeEEEecC
Confidence            999999999999999999999999999999999999999999999999988877 588 899999999999999999999


Q ss_pred             CCeEEEEEeecCc--------cccceeeeeeeeeeeeeceEEEEeeecceeeeecccc
Q 016257          309 EWGAMITKLTVPA--------DWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPV  358 (392)
Q Consensus       309 dg~i~iw~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~  358 (392)
                      |+.|+-||-..-.        ...+|.+...+.+     ..+++++.|..||+|.-..
T Consensus       613 D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G-----~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  613 DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNG-----SFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             cceEEeechhhhhhheeeccchheeeeeEEcCCC-----CeEEeccCCceeEeeeccC
Confidence            9999999765322        2234555444443     4677788899999998654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=5.4e-34  Score=230.31  Aligned_cols=306  Identities=15%  Similarity=0.200  Sum_probs=248.0

Q ss_pred             eEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC
Q 016257           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (392)
Q Consensus        55 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (392)
                      ....|..|+++|.+++.+|+.++++||+.|..-.+|+..++.....+.       .|...|.++.||.||.+||+|..+|
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt-------gHKDSVt~~~FshdgtlLATGdmsG  128 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT-------GHKDSVTCCSFSHDGTLLATGDMSG  128 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec-------CCCCceEEEEEccCceEEEecCCCc
Confidence            456789999999999999999999999999999999999988544433       4889999999999999999999999


Q ss_pred             cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE
Q 016257          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (392)
Q Consensus       135 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (392)
                      .|+||...++.....+...-..|.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+| ..++++=.|.|+|++   
T Consensus       129 ~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh-~~~ct~G~f~pdGKr---  204 (399)
T KOG0296|consen  129 KVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGH-NSPCTCGEFIPDGKR---  204 (399)
T ss_pred             cEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCC-CCCcccccccCCCce---
Confidence            9999999999887777656668889999999999999999999999999987777777765 558999999999998   


Q ss_pred             EEEEEeCCccEEEEEeCCCceeeeeeccc-CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec-------cc
Q 016257          215 FCTVQRGDKALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR-------LH  286 (392)
Q Consensus       215 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~  286 (392)
                        ++++..|++|++||..++.++..+... .....++.++..+..++.|+.++.+++-+..+++.+.....       .+
T Consensus       205 --~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~  282 (399)
T KOG0296|consen  205 --ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQ  282 (399)
T ss_pred             --EEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccc
Confidence              899999999999999999988766532 44677899999999999999999999999999887765431       22


Q ss_pred             --cCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceee-eeeeeeeeeeceEEEEeeecceeeeeccccccccc
Q 016257          287 --LGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI-YSLLLALFLASAVVFYIFFENSDSFWNFPVARNQH  363 (392)
Q Consensus       287 --~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~  363 (392)
                        ....|..+.|+..=.+.|+|+.||+|.|||+........... .......+..+..+++++.+|.||.||..+|+...
T Consensus       283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~  362 (399)
T KOG0296|consen  283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKF  362 (399)
T ss_pred             hhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEE
Confidence              123344455555666889999999999999986554433322 22334445557788899999999999999998654


Q ss_pred             C-CCCcccccC
Q 016257          364 G-GPKIESILR  373 (392)
Q Consensus       364 ~-~p~~~~~~~  373 (392)
                      . .-+..+|+.
T Consensus       363 ~y~GH~~~Il~  373 (399)
T KOG0296|consen  363 TYTGHQMGILD  373 (399)
T ss_pred             EEecCchheeE
Confidence            3 234444443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-33  Score=214.89  Aligned_cols=247  Identities=17%  Similarity=0.179  Sum_probs=213.8

Q ss_pred             EEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcE
Q 016257           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (392)
Q Consensus        57 ~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  136 (392)
                      ..+..|+++|.++.|+-+|++.++++.|.+|++|+...+..+.+...       |...|..++.+.|+..|++++.|..+
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-------hG~EVlD~~~s~Dnskf~s~GgDk~v   83 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-------HGHEVLDAALSSDNSKFASCGGDKAV   83 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecC-------CCceeeeccccccccccccCCCCceE
Confidence            45788999999999999999999999999999999988876665543       67789999999999999999999999


Q ss_pred             EEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCC--eeeEEEecCCCcceEEEEecCCCCcceE
Q 016257          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (392)
Q Consensus       137 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (392)
                      .+||+.+|+..+++.+|..+|+.+.|+.+...+++|+-|.++++||.++.  ++++.+....+ .|.++..+...     
T Consensus        84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D-~V~Si~v~~he-----  157 (307)
T KOG0316|consen   84 QVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD-GVSSIDVAEHE-----  157 (307)
T ss_pred             EEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC-ceeEEEecccE-----
Confidence            99999999999999999999999999999999999999999999999864  56676655444 68888776542     


Q ss_pred             EEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcc--eE
Q 016257          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS--IA  292 (392)
Q Consensus       215 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--i~  292 (392)
                        +++++.||+++.||++.++...-.  ...+|+++.|++|++..+.++-|+++++.|-.+|+++..+ .+| ...  -.
T Consensus       158 --IvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY-kGh-kn~eykl  231 (307)
T KOG0316|consen  158 --IVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY-KGH-KNMEYKL  231 (307)
T ss_pred             --EEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh-ccc-ccceeee
Confidence              799999999999999998865433  4579999999999999999999999999999999998877 567 332  34


Q ss_pred             EEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257          293 LVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       293 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                      ..+++....++++|++||.+.+|++.....
T Consensus       232 dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~  261 (307)
T KOG0316|consen  232 DCCLNQSDTHVFSGSEDGKVYFWDLVDETQ  261 (307)
T ss_pred             eeeecccceeEEeccCCceEEEEEecccee
Confidence            556777778999999999999999976543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=7.1e-35  Score=234.15  Aligned_cols=273  Identities=14%  Similarity=0.176  Sum_probs=226.1

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ...|+|+....+     .+++|..      |++|++|+.+        ...+...+.||++.|.|+.|.  .+.+++|+.
T Consensus       197 skgVYClQYDD~-----kiVSGlr------DnTikiWD~n--------~~~c~~~L~GHtGSVLCLqyd--~rviisGSS  255 (499)
T KOG0281|consen  197 SKGVYCLQYDDE-----KIVSGLR------DNTIKIWDKN--------SLECLKILTGHTGSVLCLQYD--ERVIVSGSS  255 (499)
T ss_pred             CCceEEEEecch-----hhhcccc------cCceEEeccc--------cHHHHHhhhcCCCcEEeeecc--ceEEEecCC
Confidence            456899988653     3665555      8889999876        556667799999999999994  569999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCce---eecccCCCCcEEEE
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAHKSVLDM  160 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~i  160 (392)
                      |.+|+|||+++++....+.       .|...|..+.|+.  .++++++.|.++.+||+.....   ...+.+|...|..+
T Consensus       256 DsTvrvWDv~tge~l~tli-------hHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvV  326 (499)
T KOG0281|consen  256 DSTVRVWDVNTGEPLNTLI-------HHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV  326 (499)
T ss_pred             CceEEEEeccCCchhhHHh-------hhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeee
Confidence            9999999999998765544       3778999999973  4999999999999999976542   33456777899999


Q ss_pred             EecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeee
Q 016257          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (392)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~  240 (392)
                      .|+  .+++++++.|.+|++|++.+.+.++++.+|.. .|.|+.+.  ++.     +++|+.|.+|++||+..|.++..+
T Consensus       327 dfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkR-GIAClQYr--~rl-----vVSGSSDntIRlwdi~~G~cLRvL  396 (499)
T KOG0281|consen  327 DFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR-GIACLQYR--DRL-----VVSGSSDNTIRLWDIECGACLRVL  396 (499)
T ss_pred             ccc--cceEEEecCCceEEEEeccceeeehhhhcccc-cceehhcc--CeE-----EEecCCCceEEEEeccccHHHHHH
Confidence            997  56999999999999999999999999988766 47666653  443     799999999999999999999999


Q ss_pred             cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee--------eccccCcceEEEEEeeCCCeEEEEeCCCeE
Q 016257          241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS--------KRLHLGTSIALVEFCPTQRVVLTASKEWGA  312 (392)
Q Consensus       241 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  312 (392)
                      .+|..-|.++.|.  .+.+++|+.||+|++||+.++...+..        ...| .+.|..+.|  |...+++++.|.+|
T Consensus       397 eGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h-sgRVFrLQF--D~fqIvsssHddtI  471 (499)
T KOG0281|consen  397 EGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH-SGRVFRLQF--DEFQIISSSHDDTI  471 (499)
T ss_pred             hchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhc-cceeEEEee--cceEEEeccCCCeE
Confidence            9999999999994  678999999999999999876543211        1346 788999999  56789999999999


Q ss_pred             EEEEeecCc
Q 016257          313 MITKLTVPA  321 (392)
Q Consensus       313 ~iw~~~~~~  321 (392)
                      .||++....
T Consensus       472 LiWdFl~~~  480 (499)
T KOG0281|consen  472 LIWDFLNGP  480 (499)
T ss_pred             EEEEcCCCC
Confidence            999997543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-33  Score=242.89  Aligned_cols=248  Identities=13%  Similarity=0.164  Sum_probs=223.8

Q ss_pred             EeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEE
Q 016257           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (392)
Q Consensus        58 ~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  137 (392)
                      ++..|+..|.++.|||...+++++-.+|.|.|||.++......+...       .-+|++..|-+..+++++|+.|..|+
T Consensus         8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~-------~~PvRa~kfiaRknWiv~GsDD~~Ir   80 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS-------EVPVRAAKFIARKNWIVTGSDDMQIR   80 (794)
T ss_pred             HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec-------ccchhhheeeeccceEEEecCCceEE
Confidence            35558899999999999999999999999999999998766665442       35889999999999999999999999


Q ss_pred             EEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCC-eeeEEEecCCCcceEEEEecCCCCcceEEE
Q 016257          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFC  216 (392)
Q Consensus       138 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (392)
                      +|+..+++.+..+..|.+-|.+++.+|...+++++|.|-+|++||-+.. .+.+++.+| ...|.+++|+|.....    
T Consensus        81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH-~HyVMqv~fnPkD~nt----  155 (794)
T KOG0276|consen   81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH-EHYVMQVAFNPKDPNT----  155 (794)
T ss_pred             EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc-ceEEEEEEecCCCccc----
Confidence            9999999999999999999999999999999999999999999999876 455666665 4589999999976653    


Q ss_pred             EEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCC--CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEE
Q 016257          217 TVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG--KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALV  294 (392)
Q Consensus       217 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~  294 (392)
                      +++++-|++|++|.+.+..+..++.+|...|+|+.+-+-|  .+|++|+.|.+|+|||.++..+++.+ .+| ...|+.+
T Consensus       156 FaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL-eGH-t~Nvs~v  233 (794)
T KOG0276|consen  156 FASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL-EGH-TNNVSFV  233 (794)
T ss_pred             eeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh-hcc-cccceEE
Confidence            6899999999999999999999999999999999998754  79999999999999999999999988 689 9999999


Q ss_pred             EEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          295 EFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       295 ~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      .|+|.-.++++|++||+++||.-.+
T Consensus       234 ~fhp~lpiiisgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  234 FFHPELPIIISGSEDGTVRIWNSKT  258 (794)
T ss_pred             EecCCCcEEEEecCCccEEEecCcc
Confidence            9999999999999999999998764

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.6e-34  Score=233.30  Aligned_cols=292  Identities=14%  Similarity=0.097  Sum_probs=227.8

Q ss_pred             ceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC
Q 016257           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (392)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (392)
                      ...+.+..|.+.|.-+.||++|++||+++.|.+..+|++..... .++.   .....|..+|..+.||||.++|++++.|
T Consensus       215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~kl~---~tlvgh~~~V~yi~wSPDdryLlaCg~~  290 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FKLK---KTLVGHSQPVSYIMWSPDDRYLLACGFD  290 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-eeee---eeeecccCceEEEEECCCCCeEEecCch
Confidence            34456889999999999999999999999999999999976654 1111   1223588999999999999999999999


Q ss_pred             CcEEEEeCCCCceeecccCCC-CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcc
Q 016257          134 GHLRIMHWPSLRIILDEPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (392)
Q Consensus       134 g~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (392)
                      ..+.+||+.+|.....+.... ..+.+++|.|||..+++|+.|+++..||+. ++.+..++......|.+++.++||++ 
T Consensus       291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~-  368 (519)
T KOG0293|consen  291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKY-  368 (519)
T ss_pred             HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcE-
Confidence            999999999999876665553 479999999999999999999999999995 55566666655567999999999998 


Q ss_pred             eEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccC-cce
Q 016257          213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLG-TSI  291 (392)
Q Consensus       213 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~i  291 (392)
                          +++...|..|++|+.++...+.. .....+++++++|.|++++.+--.+..+++||++..+.++.+ .+|.. .-+
T Consensus       369 ----vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY-~Ghkq~~fi  442 (519)
T KOG0293|consen  369 ----VLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKY-FGHKQGHFI  442 (519)
T ss_pred             ----EEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHh-hcccccceE
Confidence                56666899999999987555433 334678999999999999999999999999999987777666 46622 223


Q ss_pred             EEEEEee-CCCeEEEEeCCCeEEEEEeecCccccceee-eeee---eeeeeeceEEEEeeecceeeeeccc
Q 016257          292 ALVEFCP-TQRVVLTASKEWGAMITKLTVPADWKEWQI-YSLL---LALFLASAVVFYIFFENSDSFWNFP  357 (392)
Q Consensus       292 ~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~d~~i~~W~~~  357 (392)
                      -.-+|.- +..++++|++|+.|+||+...+....+..- ....   ..........++++.||+||+|-..
T Consensus       443 IrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  443 IRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             EEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence            3344543 457999999999999999887655433210 0001   1111234467778889999999865

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-33  Score=250.89  Aligned_cols=285  Identities=15%  Similarity=0.181  Sum_probs=242.2

Q ss_pred             eeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEE
Q 016257           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (392)
Q Consensus        59 ~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  138 (392)
                      |+..+..|..++|+|...+++++-.+|.|++||.+-+....++.       +|.++|+.+.|+|++.++++|+.|-+|++
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd-------eHdGpVRgv~FH~~qplFVSGGDDykIkV   77 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD-------EHDGPVRGVDFHPTQPLFVSGGDDYKIKV   77 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh-------ccCCccceeeecCCCCeEEecCCccEEEE
Confidence            45557889999999999999999999999999998877655554       48999999999999999999999999999


Q ss_pred             EeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (392)
                      |+.++.+++.++.+|-+-|..+.|++.-.+|+++|.|.+|+||+.++++++..+.+|.. .|.|..|+|....     ++
T Consensus        78 WnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH-YVMcAqFhptEDl-----IV  151 (1202)
T KOG0292|consen   78 WNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH-YVMCAQFHPTEDL-----IV  151 (1202)
T ss_pred             EecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce-EEEeeccCCccce-----EE
Confidence            99999999999999999999999999999999999999999999999999999988755 7999999998876     89


Q ss_pred             EeCCccEEEEEeCCCce-----------------------------eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEE
Q 016257          219 QRGDKALLAVYDISTWN-----------------------------KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC  269 (392)
Q Consensus       219 ~~~~d~~i~v~d~~~~~-----------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  269 (392)
                      +++-|.+|++||+...+                             ....+.+|+..|+-++|+|.-.++++|+.|..|+
T Consensus       152 SaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVK  231 (1202)
T KOG0292|consen  152 SASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK  231 (1202)
T ss_pred             EecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceee
Confidence            99999999999985311                             1234568889999999999999999999999999


Q ss_pred             EEecCCceee-eeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceee---eeeeeeeeeeceEEEEe
Q 016257          270 VVDVKKMEIN-HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI---YSLLLALFLASAVVFYI  345 (392)
Q Consensus       270 iwd~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  345 (392)
                      +|.+...+.- .....+| ...|+++-|+|...++++.|+|++|++||+...+....+.-   .+-+.. .....-++.+
T Consensus       232 lWrmnetKaWEvDtcrgH-~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~la-ahP~lNLfAA  309 (1202)
T KOG0292|consen  232 LWRMNETKAWEVDTCRGH-YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILA-AHPELNLFAA  309 (1202)
T ss_pred             EEEeccccceeehhhhcc-cCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEE-ecCCcceeee
Confidence            9998765532 2234789 99999999999999999999999999999998776654411   111111 1234467788


Q ss_pred             eecceeeeecccc
Q 016257          346 FFENSDSFWNFPV  358 (392)
Q Consensus       346 ~~d~~i~~W~~~~  358 (392)
                      ++|+-+.++.++.
T Consensus       310 gHDsGm~VFkleR  322 (1202)
T KOG0292|consen  310 GHDSGMIVFKLER  322 (1202)
T ss_pred             ecCCceEEEEEcc
Confidence            8899888888763

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=4.1e-33  Score=254.42  Aligned_cols=307  Identities=15%  Similarity=0.144  Sum_probs=244.5

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCcc---cc-CCceEEEeeCCCCCeeEEEEcCCCCeEE
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSV---YT-SPLVTYVFDESEGDPMTIAVNPSGDDFV   79 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~---~~-~~~~~~~~~~h~~~v~~~~~sp~~~~l~   79 (392)
                      +.+|+++.-+|++.   .+++|+..    .|+.+.||+.++-....   .. -+....+...|.+.|+|+.|+|||++||
T Consensus        13 ~~~IfSIdv~pdg~---~~aTgGq~----~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA   85 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGV---KFATGGQV----LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA   85 (942)
T ss_pred             CeeEEEEEecCCce---eEecCCcc----ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence            45799999999994   47777743    36667799987533211   11 2445556778999999999999999999


Q ss_pred             EEeCCCeEEEEEEeCCcc-----------ceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceee
Q 016257           80 CSTTNGGCKLFEVYGGAT-----------DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL  148 (392)
Q Consensus        80 ~~~~d~~i~iw~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~  148 (392)
                      +|++|+.|.||+......           ..+..........|...|..++|+|++.+|++++.|++|.+|+..+.+.+.
T Consensus        86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~  165 (942)
T KOG0973|consen   86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK  165 (942)
T ss_pred             eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence            999999999999884100           000000111123488999999999999999999999999999999999888


Q ss_pred             cccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCC-----cceEEEEecCCCCcceEEEEEEeCCc
Q 016257          149 DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-----EKIELCRFSKDGTKPFLFCTVQRGDK  223 (392)
Q Consensus       149 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (392)
                      .+.+|+..|..+.|.|-|++|++-+.|++|++|++.+-...+.+..+.+     ..+..+.|+|||.++... -+..+..
T Consensus       166 vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~-nA~n~~~  244 (942)
T KOG0973|consen  166 VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP-NAVNGGK  244 (942)
T ss_pred             eeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch-hhccCCc
Confidence            9999999999999999999999999999999999877656666554332     357889999999973211 1233455


Q ss_pred             cEEEEEeCCCceeeeeecccCCCcEEEEECCC-----CC------------EEEEEeCCCcEEEEecCCceeeeeeeccc
Q 016257          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLD-----GK------------YLAMGSKDGDICVVDVKKMEINHWSKRLH  286 (392)
Q Consensus       224 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~-----~~------------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  286 (392)
                      ..+.|.+..+.+.-..+-+|..++.++.|+|.     .+            .+|+|+.|++|.||.....+++..+....
T Consensus       245 ~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf  324 (942)
T KOG0973|consen  245 STIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF  324 (942)
T ss_pred             ceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh
Confidence            68999999988888889999999999999972     12            68899999999999998888777665555


Q ss_pred             cCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          287 LGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       287 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                       ...|.+++|+|||..|+++|.||+|.+..+..
T Consensus       325 -~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  325 -NKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             -cCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence             78999999999999999999999999999874

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.9e-33  Score=231.63  Aligned_cols=281  Identities=17%  Similarity=0.200  Sum_probs=226.7

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ..+|.+++|+|..++ .++++++.+        +++|...        .......+......|+++.|..||++||+|..
T Consensus        26 ~~~vssl~fsp~~P~-d~aVt~S~r--------vqly~~~--------~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~   88 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPY-DFAVTSSVR--------VQLYSSV--------TRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDE   88 (487)
T ss_pred             cCcceeEecCCCCCC-ceEEecccE--------EEEEecc--------hhhhhhhHHhhccceeEEEeecCCeEEEccCC
Confidence            568999999997776 566655553        5677654        22222334445788999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~  162 (392)
                      .|.|+|||.++......+.       .|..++..+.|+| ++..+++|+.|+.+++||+.+......+.+|.+.|.+.+|
T Consensus        89 sG~V~vfD~k~r~iLR~~~-------ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~  161 (487)
T KOG0310|consen   89 SGHVKVFDMKSRVILRQLY-------AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDI  161 (487)
T ss_pred             cCcEEEeccccHHHHHHHh-------hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecc
Confidence            9999999965533222222       3788999999999 5567788888999999999988876678889999999999


Q ss_pred             cCCC-CeEEEEcCCCcEEEEECCCC-eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce-eeee
Q 016257          163 SLDS-EFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGH  239 (392)
Q Consensus       163 ~~~~-~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~  239 (392)
                      +|.. ..+++|+.||+|++||++.. ..+.++  .++.+|..+.+-|.|..      +.......+++||+-++. .+..
T Consensus       162 ~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el--nhg~pVe~vl~lpsgs~------iasAgGn~vkVWDl~~G~qll~~  233 (487)
T KOG0310|consen  162 SPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL--NHGCPVESVLALPSGSL------IASAGGNSVKVWDLTTGGQLLTS  233 (487)
T ss_pred             ccCCCeEEEecCCCceEEEEEeccCCceeEEe--cCCCceeeEEEcCCCCE------EEEcCCCeEEEEEecCCceehhh
Confidence            9954 58999999999999999987 444444  46678999999999985      444456789999999554 4455


Q ss_pred             ecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       240 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      +..|...|+|+.+..++..|++|+-|+.+++||+.+.+.+....-   .++|.+++.+|+++.++.|..||.+.+-+...
T Consensus       234 ~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  234 MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             hhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCCceEEEecccceeeeehhhc
Confidence            555999999999999999999999999999999998888877632   78999999999999999999999998875543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.5e-34  Score=227.25  Aligned_cols=289  Identities=13%  Similarity=0.182  Sum_probs=242.8

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCC
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~   85 (392)
                      -+-|..|+||++   ++++|+.      |+-|++|++-...-...-..+..-.|--|..+|.|+.|+.|...||+|+.||
T Consensus       215 h~EcA~FSPDgq---yLvsgSv------DGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG  285 (508)
T KOG0275|consen  215 HVECARFSPDGQ---YLVSGSV------DGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG  285 (508)
T ss_pred             chhheeeCCCCc---eEeeccc------cceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence            467899999994   5776655      7779999996432211112222334555789999999999999999999999


Q ss_pred             eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCC
Q 016257           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD  165 (392)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~  165 (392)
                      .|++|.+.++.+..++..      .|...|+|+.||.|+..+++++.|.++++.-+++|+++..+.+|..-|+...|.+|
T Consensus       286 kIKvWri~tG~ClRrFdr------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d  359 (508)
T KOG0275|consen  286 KIKVWRIETGQCLRRFDR------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD  359 (508)
T ss_pred             cEEEEEEecchHHHHhhh------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCC
Confidence            999999999998877654      27789999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEcCCCcEEEEECCCCeeeEEEecC-CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc--
Q 016257          166 SEFLATTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL--  242 (392)
Q Consensus       166 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~--  242 (392)
                      |..+++++.||+|++|+..+.+++.++... .+.+|..+..-|.+..-    ++.+...+++++.++.. +.++.+..  
T Consensus       360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh----~iVCNrsntv~imn~qG-QvVrsfsSGk  434 (508)
T KOG0275|consen  360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEH----FIVCNRSNTVYIMNMQG-QVVRSFSSGK  434 (508)
T ss_pred             CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCce----EEEEcCCCeEEEEeccc-eEEeeeccCC
Confidence            999999999999999999999999988653 34578888888866432    57788889999999874 55555432  


Q ss_pred             -cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEE
Q 016257          243 -LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (392)
Q Consensus       243 -~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  316 (392)
                       ..+..-+...||.|.++++.++|+.++.|...+|++...+ ..| +..+-.++-+|..+.|++-++||.+++|.
T Consensus       435 REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl-~Vh-EkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  435 REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL-PVH-EKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee-ecc-cccccccccCcccchhhhhcccchhhhcC
Confidence             2355667789999999999999999999999999998877 578 88899999999999999999999999995

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3e-32  Score=207.82  Aligned_cols=277  Identities=16%  Similarity=0.190  Sum_probs=231.9

Q ss_pred             CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe
Q 016257            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (392)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~   82 (392)
                      ..++|..+.|+.++.+  .++       .|.+.++++|+-.        ...+..+..+|...|..++.+.|...+++|+
T Consensus        16 ~qgaV~avryN~dGnY--~lt-------cGsdrtvrLWNp~--------rg~liktYsghG~EVlD~~~s~Dnskf~s~G   78 (307)
T KOG0316|consen   16 AQGAVRAVRYNVDGNY--CLT-------CGSDRTVRLWNPL--------RGALIKTYSGHGHEVLDAALSSDNSKFASCG   78 (307)
T ss_pred             cccceEEEEEccCCCE--EEE-------cCCCceEEeeccc--------ccceeeeecCCCceeeeccccccccccccCC
Confidence            4689999999999965  344       3457779999765        5667788999999999999999999999999


Q ss_pred             CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC--ceeecccCCCCcEEEE
Q 016257           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL--RIILDEPKAHKSVLDM  160 (392)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~i  160 (392)
                      .|..+.+||+.+++...++..       |.+.|+.++|+.+...+++|+.|.++++||-++.  ++++.+......|.++
T Consensus        79 gDk~v~vwDV~TGkv~Rr~rg-------H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si  151 (307)
T KOG0316|consen   79 GDKAVQVWDVNTGKVDRRFRG-------HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSI  151 (307)
T ss_pred             CCceEEEEEcccCeeeeeccc-------ccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEE
Confidence            999999999999997766653       7889999999999999999999999999998754  5666666677789999


Q ss_pred             EecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeee
Q 016257          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (392)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~  240 (392)
                      ...  +..|++|+.||+++.||++.++......   ..+|+++.|+++++.     .+.++-++++++.|-.+++.++..
T Consensus       152 ~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs~s~d~nc-----~La~~l~stlrLlDk~tGklL~sY  221 (307)
T KOG0316|consen  152 DVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVSFSKDGNC-----SLASSLDSTLRLLDKETGKLLKSY  221 (307)
T ss_pred             Eec--ccEEEeeccCCcEEEEEeecceeehhhc---CCcceeEEecCCCCE-----EEEeeccceeeecccchhHHHHHh
Confidence            887  5679999999999999999997765554   348999999999996     788999999999999999999999


Q ss_pred             cccCCCcEE--EEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcc-eEEEEEeeCCCeEEEEeCCCeEEEEE
Q 016257          241 RLLRKPASV--LSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS-IALVEFCPTQRVVLTASKEWGAMITK  316 (392)
Q Consensus       241 ~~~~~~v~~--~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~dg~i~iw~  316 (392)
                      ++|...-..  .+++....++++|++||.|++||+.....+..+. .+ ... |.+++++|.-..++++... .+..|.
T Consensus       222 kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~-~~-~~v~v~dl~~hp~~~~f~~A~~~-~~~~~~  297 (307)
T KOG0316|consen  222 KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS-VV-STVIVTDLSCHPTMDDFITATGH-GDLFWY  297 (307)
T ss_pred             cccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec-cC-CceeEEeeecccCccceeEecCC-ceecee
Confidence            998765433  4556667899999999999999999988887763 44 444 8999999987777776544 455554

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=6.4e-32  Score=209.01  Aligned_cols=273  Identities=16%  Similarity=0.217  Sum_probs=232.6

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC-CCCeEEEEe
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST   82 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~~~~   82 (392)
                      .++|.+++|+-++.+   ++.|+.      +.++.+|+++..      .........+|.+.|..++|+| +.+.+++++
T Consensus        20 ~~~v~Sv~wn~~g~~---lasgs~------dktv~v~n~e~~------r~~~~~~~~gh~~svdql~w~~~~~d~~atas   84 (313)
T KOG1407|consen   20 VQKVHSVAWNCDGTK---LASGSF------DKTVSVWNLERD------RFRKELVYRGHTDSVDQLCWDPKHPDLFATAS   84 (313)
T ss_pred             hhcceEEEEcccCce---eeeccc------CCceEEEEecch------hhhhhhcccCCCcchhhheeCCCCCcceEEec
Confidence            468999999999966   555444      677999999865      2223345678999999999998 456899999


Q ss_pred             CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (392)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~  162 (392)
                      .|.+|++||....++......        .+.-..+.|+|+|+++++++.|..|...|.++.+..... .....+..++|
T Consensus        85 ~dk~ir~wd~r~~k~~~~i~~--------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne~~w  155 (313)
T KOG1407|consen   85 GDKTIRIWDIRSGKCTARIET--------KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNEISW  155 (313)
T ss_pred             CCceEEEEEeccCcEEEEeec--------cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh-cccceeeeeee
Confidence            999999999999987665543        234467899999999999999999999999987766433 33346888999


Q ss_pred             cCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc
Q 016257          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (392)
Q Consensus       163 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~  242 (392)
                      +.++.+++.....|+|.|.....-+++..+..|.. ...|+.|+|+|++     +++|+.|..+.+||+...-+.+.+..
T Consensus       156 ~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~s-nCicI~f~p~Gry-----fA~GsADAlvSLWD~~ELiC~R~isR  229 (313)
T KOG1407|consen  156 NNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPS-NCICIEFDPDGRY-----FATGSADALVSLWDVDELICERCISR  229 (313)
T ss_pred             cCCCCEEEEecCCceEEEEeccccccccccccCCc-ceEEEEECCCCce-----EeeccccceeeccChhHhhhheeecc
Confidence            98888877777789999999999999999988764 6889999999998     89999999999999999888889999


Q ss_pred             cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC
Q 016257          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE  309 (392)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  309 (392)
                      ++-+|+.+.||.||++||++++|..|-|=++++|..+..+.  + .++...++|+|...+||.++.|
T Consensus       230 ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~--~-~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  230 LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP--C-EGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee--c-cCCceeEEecCCCceeeEEecC
Confidence            99999999999999999999999999999999999888763  3 7899999999999999988876

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=8.7e-33  Score=218.96  Aligned_cols=295  Identities=14%  Similarity=0.242  Sum_probs=241.6

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcC------CC----CccccCCceEEEeeCCCCCeeEEEEcC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDP------KT----TSVYTSPLVTYVFDESEGDPMTIAVNP   73 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~------~~----~~~~~~~~~~~~~~~h~~~v~~~~~sp   73 (392)
                      .+|.++.+|+||+   .|+++|+.      |..|+|++.+.      ..    .......-...+|-.|.+.|+++.|+|
T Consensus       112 K~~cR~aafs~DG---~lvATGsa------D~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP  182 (430)
T KOG0640|consen  112 KSPCRAAAFSPDG---SLVATGSA------DASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP  182 (430)
T ss_pred             ccceeeeeeCCCC---cEEEccCC------cceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence            4789999999999   78998777      66799998861      10    011112234567788999999999999


Q ss_pred             CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecc---
Q 016257           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE---  150 (392)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---  150 (392)
                      ....|++|+.|++|++||+.......     ..+.++...+|.++.|+|.|.+|++|..-.++++||+++.++...-   
T Consensus       183 re~ILiS~srD~tvKlFDfsK~saKr-----A~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd  257 (430)
T KOG0640|consen  183 RETILISGSRDNTVKLFDFSKTSAKR-----AFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD  257 (430)
T ss_pred             hhheEEeccCCCeEEEEecccHHHHH-----HHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc
Confidence            99999999999999999997654322     2233445679999999999999999999999999999998875433   


Q ss_pred             cCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec-CCCcceEEEEecCCCCcceEEEEEEeCCccEEEEE
Q 016257          151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (392)
Q Consensus       151 ~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~  229 (392)
                      ..|.+.|+++.+++.+++.++++.||.|++||--+++++.++.. |.+..|.+..|..++++     +++++.|..+++|
T Consensus       258 ~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky-----iLsSG~DS~vkLW  332 (430)
T KOG0640|consen  258 DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY-----ILSSGKDSTVKLW  332 (430)
T ss_pred             cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE-----EeecCCcceeeee
Confidence            34556899999999999999999999999999999999988865 44567999999999998     8999999999999


Q ss_pred             eCCCceeeeeecccC-----CCcEEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeE
Q 016257          230 DISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV  303 (392)
Q Consensus       230 d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  303 (392)
                      .+.+++.+....+..     .--+...|.....|++.-.+ .+.+.-||.++.........+| .+.+..+.-||.+..+
T Consensus       333 Ei~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgH-n~a~R~i~HSP~~p~F  411 (430)
T KOG0640|consen  333 EISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGH-NGAVRWIVHSPVEPAF  411 (430)
T ss_pred             eecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCC-CCCceEEEeCCCCCce
Confidence            999999988776542     11234567777777766543 4679999999999888888899 9999999999999999


Q ss_pred             EEEeCCCeEEEEEee
Q 016257          304 LTASKEWGAMITKLT  318 (392)
Q Consensus       304 ~~~~~dg~i~iw~~~  318 (392)
                      ++++.|-.+++|.-+
T Consensus       412 mTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  412 MTCSDDFRARFWYRR  426 (430)
T ss_pred             eeecccceeeeeeec
Confidence            999999999999754

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=3e-32  Score=210.83  Aligned_cols=251  Identities=12%  Similarity=0.126  Sum_probs=214.7

Q ss_pred             EEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCc
Q 016257           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGH  135 (392)
Q Consensus        57 ~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~  135 (392)
                      ..+++|...|.+++|+-+|..|++|+.|+++.+|+++.......     .....|.+.|-.++|+| ....+++++.|.+
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~-----~~~~gh~~svdql~w~~~~~d~~atas~dk~   88 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE-----LVYRGHTDSVDQLCWDPKHPDLFATASGDKT   88 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh-----hcccCCCcchhhheeCCCCCcceEEecCCce
Confidence            56788999999999999999999999999999999987743322     22335788999999998 6779999999999


Q ss_pred             EEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (392)
Q Consensus       136 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (392)
                      |++||++.++++.......+.| .+.|+|+|++++.++.|..|...|.++.+.....+...  .+..+.|+.++..    
T Consensus        89 ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~--e~ne~~w~~~nd~----  161 (313)
T KOG1407|consen   89 IRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF--EVNEISWNNSNDL----  161 (313)
T ss_pred             EEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc--eeeeeeecCCCCE----
Confidence            9999999999987766555555 47899999999999999999999999888777665433  5788899966664    


Q ss_pred             EEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEE
Q 016257          216 CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVE  295 (392)
Q Consensus       216 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  295 (392)
                       ++.....|.|.|......+++..++.|.....|+.|+|+|++||+|+.|..+.+||++..-+.+.+. .+ .-+|..++
T Consensus       162 -Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is-Rl-dwpVRTlS  238 (313)
T KOG1407|consen  162 -FFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS-RL-DWPVRTLS  238 (313)
T ss_pred             -EEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec-cc-cCceEEEE
Confidence             3445556899999999999999999999999999999999999999999999999999988888774 45 78999999


Q ss_pred             EeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257          296 FCPTQRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       296 ~s~~~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                      ||.||++||++++|..|-|=+++++..
T Consensus       239 FS~dg~~lASaSEDh~IDIA~vetGd~  265 (313)
T KOG1407|consen  239 FSHDGRMLASASEDHFIDIAEVETGDR  265 (313)
T ss_pred             eccCcceeeccCccceEEeEecccCCe
Confidence            999999999999999888877766543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-32  Score=244.40  Aligned_cols=257  Identities=16%  Similarity=0.176  Sum_probs=205.2

Q ss_pred             eEEEee-CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCcc---------------------------c-----e--
Q 016257           55 VTYVFD-ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT---------------------------D-----I--   99 (392)
Q Consensus        55 ~~~~~~-~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~---------------------------~-----~--   99 (392)
                      ..+.+. .|.+.|.++.||+||+|||+|+.|+.|+||.+...+.                           .     .  
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            344566 8999999999999999999999999999999977110                           0     0  


Q ss_pred             ------------------eecccc-CCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEE
Q 016257          100 ------------------NLLAKK-MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (392)
Q Consensus       100 ------------------~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i  160 (392)
                                        .+.... ....+|.+.|..+.||.++ +|++++.|.+|++|++...+++ ....|.+-|+|+
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL-~~F~HndfVTcV  415 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECL-KVFSHNDFVTCV  415 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCccee-eEEecCCeeEEE
Confidence                              000000 0123578899999999876 8999999999999999987776 456788899999


Q ss_pred             EecC-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeee
Q 016257          161 DFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (392)
Q Consensus       161 ~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~  239 (392)
                      +|+| |.+++++|+-|++++||++...+...-...  ...|++++|.|+|+.     .+.|+.+|.+++|+....+....
T Consensus       416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl--~~lITAvcy~PdGk~-----avIGt~~G~C~fY~t~~lk~~~~  488 (712)
T KOG0283|consen  416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL--RDLITAVCYSPDGKG-----AVIGTFNGYCRFYDTEGLKLVSD  488 (712)
T ss_pred             EecccCCCcEeecccccceEEeecCcCeeEeehhh--hhhheeEEeccCCce-----EEEEEeccEEEEEEccCCeEEEe
Confidence            9999 889999999999999999977665544332  247999999999998     89999999999999998766543


Q ss_pred             ecc--------cCCCcEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCC
Q 016257          240 KRL--------LRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW  310 (392)
Q Consensus       240 ~~~--------~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  310 (392)
                      ...        ....|+.+.|.|.. ..+++.+.|..|+|||.+..+++..+...+....-....|+.||++|+++++|.
T Consensus       489 ~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs  568 (712)
T KOG0283|consen  489 FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS  568 (712)
T ss_pred             eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence            321        12379999999854 457777889999999998888887775445345557788999999999999999


Q ss_pred             eEEEEEeecC
Q 016257          311 GAMITKLTVP  320 (392)
Q Consensus       311 ~i~iw~~~~~  320 (392)
                      .|++|++...
T Consensus       569 ~VYiW~~~~~  578 (712)
T KOG0283|consen  569 WVYIWKNDSF  578 (712)
T ss_pred             eEEEEeCCCC
Confidence            9999998543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-32  Score=211.28  Aligned_cols=280  Identities=16%  Similarity=0.159  Sum_probs=219.0

Q ss_pred             eeEEEEcCC-CCeEEEE-------eCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcE
Q 016257           66 PMTIAVNPS-GDDFVCS-------TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHL  136 (392)
Q Consensus        66 v~~~~~sp~-~~~l~~~-------~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i  136 (392)
                      =+++.|||- .++||++       ...|++.|.++...+.+.....     +.-...+..++|+++ .+.+++++.||++
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s-----~d~~D~LfdV~Wse~~e~~~~~a~GDGSL   85 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQS-----YDTEDGLFDVAWSENHENQVIAASGDGSL   85 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEe-----eecccceeEeeecCCCcceEEEEecCceE
Confidence            367889992 2344433       2468899999875543333322     224568899999994 5678888999999


Q ss_pred             EEEeCCC-CceeecccCCCCcEEEEEecC-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE
Q 016257          137 RIMHWPS-LRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (392)
Q Consensus       137 ~i~d~~~-~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (392)
                      ++||+.. ..++..++.|..+|.++.|++ +++.+++++.|++|++|+...++.+.++.++. ..|...+|+|....+  
T Consensus        86 rl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~-~~Iy~a~~sp~~~nl--  162 (311)
T KOG0277|consen   86 RLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN-SCIYQAAFSPHIPNL--  162 (311)
T ss_pred             EEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCc-cEEEEEecCCCCCCe--
Confidence            9999743 346677788888999999999 55678888999999999999999999988764 589999999987763  


Q ss_pred             EEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEE
Q 016257          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL  293 (392)
Q Consensus       215 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~  293 (392)
                        +++++.|+.+++||++.......+..|...+.++.|+. +.+.|++|+.|+.|+.||+++.+.......+| +-.|..
T Consensus       163 --fas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh-~~AVRk  239 (311)
T KOG0277|consen  163 --FASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH-GLAVRK  239 (311)
T ss_pred             --EEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC-ceEEEE
Confidence              68899999999999997655556888999999999997 56789999999999999999877655555789 999999


Q ss_pred             EEEeeCCC-eEEEEeCCCeEEEEEeecCccccc---eeeee--eeeeeeeeceEEEEeeecceeeeecc
Q 016257          294 VEFCPTQR-VVLTASKEWGAMITKLTVPADWKE---WQIYS--LLLALFLASAVVFYIFFENSDSFWNF  356 (392)
Q Consensus       294 ~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~d~~i~~W~~  356 (392)
                      ++|||... .|++++.|-+++||+...+.....   .+..+  -.+--...++.++.++.|+.++||+-
T Consensus       240 vk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  240 VKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             EecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            99999654 899999999999999985543221   12222  22222347788999999999999983

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.9e-32  Score=237.86  Aligned_cols=280  Identities=15%  Similarity=0.119  Sum_probs=240.9

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d   84 (392)
                      ..|++++++.+.   .+++       ++..+.+.+|+.+        ...+..++.  .+.+.+..|-|.++++++|...
T Consensus       374 ~dVRsl~vS~d~---~~~~-------Sga~~SikiWn~~--------t~kciRTi~--~~y~l~~~Fvpgd~~Iv~G~k~  433 (888)
T KOG0306|consen  374 SDVRSLCVSSDS---ILLA-------SGAGESIKIWNRD--------TLKCIRTIT--CGYILASKFVPGDRYIVLGTKN  433 (888)
T ss_pred             hheeEEEeecCc---eeee-------ecCCCcEEEEEcc--------CcceeEEec--cccEEEEEecCCCceEEEeccC
Confidence            358888998877   4566       3345669999987        555566665  4589999999999999999999


Q ss_pred             CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC-----Cceee-------cccC
Q 016257           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-----LRIIL-------DEPK  152 (392)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-----~~~~~-------~~~~  152 (392)
                      |.+.+||+.+........       .|.+.+.+++.+||+..+++|+.|.+|++||..-     +....       +...
T Consensus       434 Gel~vfdlaS~~l~Eti~-------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe  506 (888)
T KOG0306|consen  434 GELQVFDLASASLVETIR-------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE  506 (888)
T ss_pred             CceEEEEeehhhhhhhhh-------ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe
Confidence            999999999877544433       3889999999999999999999999999999741     22111       1122


Q ss_pred             CCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC
Q 016257          153 AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (392)
Q Consensus       153 ~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~  232 (392)
                      -...|.++.+|||+++|+++--|.+++||-+.+-+..-.+.+|. -||.|+..+||++.     +++++.|..|++|-+.
T Consensus       507 l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHk-LPV~smDIS~DSkl-----ivTgSADKnVKiWGLd  580 (888)
T KOG0306|consen  507 LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHK-LPVLSMDISPDSKL-----IVTGSADKNVKIWGLD  580 (888)
T ss_pred             ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccc-cceeEEeccCCcCe-----EEeccCCCceEEeccc
Confidence            33579999999999999999999999999999988888887764 59999999999997     8999999999999999


Q ss_pred             CceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeE
Q 016257          233 TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGA  312 (392)
Q Consensus       233 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  312 (392)
                      -|.+-+.+..|+..|.++.|-|+...+++++.|+.|+-||-.+.+.++.+ .+| ...|++++.+|+|.+++++|.|.+|
T Consensus       581 FGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L-~~H-~~ev~cLav~~~G~~vvs~shD~sI  658 (888)
T KOG0306|consen  581 FGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL-DGH-HSEVWCLAVSPNGSFVVSSSHDKSI  658 (888)
T ss_pred             cchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee-ccc-hheeeeeEEcCCCCeEEeccCCcee
Confidence            99999999999999999999999999999999999999999999988887 578 8999999999999999999999999


Q ss_pred             EEEEeec
Q 016257          313 MITKLTV  319 (392)
Q Consensus       313 ~iw~~~~  319 (392)
                      ++|....
T Consensus       659 RlwE~td  665 (888)
T KOG0306|consen  659 RLWERTD  665 (888)
T ss_pred             EeeeccC
Confidence            9998653

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-32  Score=210.48  Aligned_cols=294  Identities=13%  Similarity=0.127  Sum_probs=224.9

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCC-CeEEEEeC
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCSTT   83 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~~~~~   83 (392)
                      .-=+++.|+|=-++-..+|++.. ++-.-.+.+.|.+.+ +...+    .....+ .-.+.+..++|+++. +.+++++.
T Consensus         9 f~GysvqfSPf~~nrLavAt~q~-yGl~G~G~L~ile~~-~~~gi----~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~G   81 (311)
T KOG0277|consen    9 FHGYSVQFSPFVENRLAVATAQH-YGLAGNGRLFILEVT-DPKGI----QECQSY-DTEDGLFDVAWSENHENQVIAASG   81 (311)
T ss_pred             cccceeEecccccchhheeehhh-cccccCceEEEEecC-CCCCe----EEEEee-ecccceeEeeecCCCcceEEEEec
Confidence            33478899995443233444433 333334555555553 12111    111222 236789999999954 57889999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~  162 (392)
                      ||.+++||+.........      ..+|...|.++.|++ ++..+++++-|++|++|+..-.+.+.++.+|...|+..+|
T Consensus        82 DGSLrl~d~~~~s~Pi~~------~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~  155 (311)
T KOG0277|consen   82 DGSLRLFDLTMPSKPIHK------FKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAF  155 (311)
T ss_pred             CceEEEeccCCCCcchhH------HHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEec
Confidence            999999996443321111      124889999999999 6667888899999999999988888889998889999999


Q ss_pred             cC-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce-eeeee
Q 016257          163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHK  240 (392)
Q Consensus       163 ~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~  240 (392)
                      +| ..+++++++.|+++++||++.......+..|. ..+.++.|+.-...+    +++++.|+.|+.||++..+ ++..+
T Consensus       156 sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~-~Eil~cdw~ky~~~v----l~Tg~vd~~vr~wDir~~r~pl~eL  230 (311)
T KOG0277|consen  156 SPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHN-SEILCCDWSKYNHNV----LATGGVDNLVRGWDIRNLRTPLFEL  230 (311)
T ss_pred             CCCCCCeEEEccCCceEEEEEecCCCceeEEEecc-ceeEeecccccCCcE----EEecCCCceEEEEehhhccccceee
Confidence            99 67899999999999999998754444466554 579999999877763    7999999999999999754 56778


Q ss_pred             cccCCCcEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEee-CCCeEEEEeCCCeEEEEEe
Q 016257          241 RLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP-TQRVVLTASKEWGAMITKL  317 (392)
Q Consensus       241 ~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iw~~  317 (392)
                      .+|...|+.++|||.. ..||+++.|-+++|||...+.-.......| ..-+..+.|++ ++.++|+++.|+.++||+-
T Consensus       231 ~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H-tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  231 NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH-TEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc-ceEEeccccccccCceeeecccccceeeecc
Confidence            8999999999999964 789999999999999998766544444567 88899999998 4569999999999999973

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=8.2e-31  Score=199.00  Aligned_cols=299  Identities=15%  Similarity=0.182  Sum_probs=234.7

Q ss_pred             CCCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCC-----Cccc-cCCce-EEEeeCCCCCeeEEEEcCC
Q 016257            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT-----TSVY-TSPLV-TYVFDESEGDPMTIAVNPS   74 (392)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~-----~~~~-~~~~~-~~~~~~h~~~v~~~~~sp~   74 (392)
                      |-+-.|++++|+|.+   .+.+.|+.      ..++++..+..-.     .... .+|.. -..-+.|.+.|+|.+|+|+
T Consensus        30 ~dsqairav~fhp~g---~lyavgsn------skt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~  100 (350)
T KOG0641|consen   30 EDSQAIRAVAFHPAG---GLYAVGSN------SKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC  100 (350)
T ss_pred             cchhheeeEEecCCC---ceEEeccC------CceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence            345679999999998   57777776      3446666653211     1111 12222 2334678999999999999


Q ss_pred             CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC----CCEEEEEe-CCCcEEEEeCCCCceeec
Q 016257           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD----GSRFAAGG-VDGHLRIMHWPSLRIILD  149 (392)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~-~dg~i~i~d~~~~~~~~~  149 (392)
                      |++|++|+.|.+|++..++...+.  .........-|.+.|..++|-.+    +..|++++ .|..|++-|...++....
T Consensus       101 geliatgsndk~ik~l~fn~dt~~--~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a  178 (350)
T KOG0641|consen  101 GELIATGSNDKTIKVLPFNADTCN--ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA  178 (350)
T ss_pred             cCeEEecCCCceEEEEeccccccc--ccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence            999999999999999877654332  22223333348899999999653    45677655 477788888889999888


Q ss_pred             ccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecC------CCcceEEEEecCCCCcceEEEEEEeCCc
Q 016257          150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN------SDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (392)
Q Consensus       150 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (392)
                      +.+|.+.|.++ ++-++-.+++|+.|.+|++||++-..++.++...      ....|.+++..|.|+.     ++++..|
T Consensus       179 ~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl-----l~sg~~d  252 (350)
T KOG0641|consen  179 LSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL-----LASGHAD  252 (350)
T ss_pred             ecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce-----eeeccCC
Confidence            99999988876 3445889999999999999999998888877432      1246899999999997     7899999


Q ss_pred             cEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCc---eeeeeeeccccCcceEEEEEeeCC
Q 016257          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM---EINHWSKRLHLGTSIALVEFCPTQ  300 (392)
Q Consensus       224 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~i~~~~~s~~~  300 (392)
                      ....+||++.++.++.+..|...|+++.|||...|+++++.|.+|++-|++..   ++.......| ...+-.+.|+|..
T Consensus       253 ssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh-kdk~i~~rwh~~d  331 (350)
T KOG0641|consen  253 SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH-KDKAIQCRWHPQD  331 (350)
T ss_pred             CceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec-cCceEEEEecCcc
Confidence            99999999999999999999999999999999999999999999999999752   3333333567 7888899999999


Q ss_pred             CeEEEEeCCCeEEEEEee
Q 016257          301 RVVLTASKEWGAMITKLT  318 (392)
Q Consensus       301 ~~l~~~~~dg~i~iw~~~  318 (392)
                      --+++.+.|.++.+|.++
T Consensus       332 ~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  332 FSFISSSADKTATLWALN  349 (350)
T ss_pred             ceeeeccCcceEEEeccC
Confidence            889999999999999875

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-32  Score=211.64  Aligned_cols=282  Identities=15%  Similarity=0.149  Sum_probs=226.5

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .-|++-+.++.++.   |+.+.+      -|.+..+|--.        +.....++.||++.|+|++.+.+.+.+++|+.
T Consensus        10 ERplTqiKyN~eGD---LlFsca------KD~~~~vw~s~--------nGerlGty~GHtGavW~~Did~~s~~liTGSA   72 (327)
T KOG0643|consen   10 ERPLTQIKYNREGD---LLFSCA------KDSTPTVWYSL--------NGERLGTYDGHTGAVWCCDIDWDSKHLITGSA   72 (327)
T ss_pred             ccccceEEecCCCc---EEEEec------CCCCceEEEec--------CCceeeeecCCCceEEEEEecCCcceeeeccc
Confidence            35899999999883   444322      35567788654        44555679999999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC-----CCcEEEEeCC-------CCceeeccc
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHLRIMHWP-------SLRIILDEP  151 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~i~d~~-------~~~~~~~~~  151 (392)
                      |.++++||+++++.......        ..+|..+.|+++|++++....     .+.|.++|++       ..++...+.
T Consensus        73 D~t~kLWDv~tGk~la~~k~--------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~  144 (327)
T KOG0643|consen   73 DQTAKLWDVETGKQLATWKT--------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP  144 (327)
T ss_pred             cceeEEEEcCCCcEEEEeec--------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence            99999999999997665543        468999999999998887653     4679999987       445566777


Q ss_pred             CCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeC
Q 016257          152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (392)
Q Consensus       152 ~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~  231 (392)
                      .+...++.+-|.|-+++|++|.+||.|..||+++++........|...|+.+.++++..+     +++++.|.+-++||+
T Consensus       145 t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~-----FiT~s~Dttakl~D~  219 (327)
T KOG0643|consen  145 TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY-----FITGSKDTTAKLVDV  219 (327)
T ss_pred             CCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcce-----EEecccCccceeeec
Confidence            777899999999999999999999999999999986665554445558999999999997     899999999999999


Q ss_pred             CCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCc--EEEEecCCce------------eeeeeeccccCcceEEEEEe
Q 016257          232 STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD--ICVVDVKKME------------INHWSKRLHLGTSIALVEFC  297 (392)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--i~iwd~~~~~------------~~~~~~~~~~~~~i~~~~~s  297 (392)
                      ++.+.++.+.. ..++++.+++|...+++.|+....  |.-=+.+.++            .+... ++| -++|++++|+
T Consensus       220 ~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv-kGH-FGPINsvAfh  296 (327)
T KOG0643|consen  220 RTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV-KGH-FGPINSVAFH  296 (327)
T ss_pred             cceeeEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc-ccc-ccCcceeEEC
Confidence            99988877765 679999999998877777654321  2222222332            22222 578 8999999999


Q ss_pred             eCCCeEEEEeCCCeEEEEEee
Q 016257          298 PTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       298 ~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      |+|+..++|++||.|++..+.
T Consensus       297 PdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  297 PDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             CCCcccccCCCCceEEEEEec
Confidence            999999999999999998765

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-31  Score=230.97  Aligned_cols=247  Identities=14%  Similarity=0.146  Sum_probs=210.9

Q ss_pred             eCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 016257           60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (392)
Q Consensus        60 ~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~  139 (392)
                      .-+.+.|+++.|+++|.+|++|..+|.|.|||....+....+..      .|...|-+++|+  +..+.+|+.|+.|..+
T Consensus       214 ~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~------~h~~rvg~laW~--~~~lssGsr~~~I~~~  285 (484)
T KOG0305|consen  214 SFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG------SHASRVGSLAWN--SSVLSSGSRDGKILNH  285 (484)
T ss_pred             ecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC------CcCceeEEEecc--CceEEEecCCCcEEEE
Confidence            33488999999999999999999999999999988775544432      277899999998  6689999999999999


Q ss_pred             eCCCCceeec-ccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257          140 HWPSLRIILD-EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       140 d~~~~~~~~~-~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (392)
                      |++..+.... +..|...|..+.|++|++++|+|+.|+.+.|||.....++..+..|. ..|.+++|+|-...++  +..
T Consensus       286 dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~-aAVKA~awcP~q~~lL--AsG  362 (484)
T KOG0305|consen  286 DVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHT-AAVKALAWCPWQSGLL--ATG  362 (484)
T ss_pred             EEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccc-eeeeEeeeCCCccCce--EEc
Confidence            9998776655 56677799999999999999999999999999998888888887665 4799999999877632  134


Q ss_pred             EeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEE--eCCCcEEEEecCCceeeeeeeccccCcceEEEEE
Q 016257          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG--SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF  296 (392)
Q Consensus       219 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  296 (392)
                      .|+.|+.|++||..++..+..... ...|..+.|++..+-|+++  ..++.|.||+..+.+.+..+ .+| ...|..+++
T Consensus       363 GGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l-~gH-~~RVl~la~  439 (484)
T KOG0305|consen  363 GGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL-LGH-TSRVLYLAL  439 (484)
T ss_pred             CCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee-cCC-cceeEEEEE
Confidence            455799999999999988866554 6789999999998776664  35678999999998888776 689 899999999


Q ss_pred             eeCCCeEEEEeCCCeEEEEEeecC
Q 016257          297 CPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       297 s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      +|||..+++|+.|.++++|++-..
T Consensus       440 SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  440 SPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCCCCEEEEecccCcEEeccccCC
Confidence            999999999999999999998754

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.5e-33  Score=220.48  Aligned_cols=288  Identities=13%  Similarity=0.151  Sum_probs=231.4

Q ss_pred             CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccC-CCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 016257           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKM-PPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (392)
Q Consensus        61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~  139 (392)
                      +....+.|..|+|||++|++|+.||.|.+||..+++....+..... ...-+..+|.|+.||.|...+++|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            4567799999999999999999999999999999986555433222 223467899999999999999999999999999


Q ss_pred             eCCCCceeeccc-CCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257          140 HWPSLRIILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       140 d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (392)
                      .+++|.++..+. .|...|+++.|+.|+..+++++.|.++++--+.+|++++.+.+|.. .|+...|.++|.+     ++
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS-yvn~a~ft~dG~~-----ii  364 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS-YVNEATFTDDGHH-----II  364 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc-cccceEEcCCCCe-----EE
Confidence            999999998887 4556999999999999999999999999999999999999988765 7999999999998     89


Q ss_pred             EeCCccEEEEEeCCCceeeeeeccc--CCCcEEEEECCC-CCEEEEEeCCCcEEEEecCCceeeeeeeccc-cCcceEEE
Q 016257          219 QRGDKALLAVYDISTWNKIGHKRLL--RKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINHWSKRLH-LGTSIALV  294 (392)
Q Consensus       219 ~~~~d~~i~v~d~~~~~~~~~~~~~--~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~i~~~  294 (392)
                      +++.||+|++|+.++.+++.+++..  +.+|.++..-|. ...++++...++|.|.++. |+.++.+..+. ..+..-+.
T Consensus       365 saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~  443 (508)
T KOG0275|consen  365 SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINA  443 (508)
T ss_pred             EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEE
Confidence            9999999999999999998877654  457778777774 5788889899999999986 45555553332 14566677


Q ss_pred             EEeeCCCeEEEEeCCCeEEEEEeecCcccc---ceeeeeeeeeeeeeceEEEEeeecceeeeec
Q 016257          295 EFCPTQRVVLTASKEWGAMITKLTVPADWK---EWQIYSLLLALFLASAVVFYIFFENSDSFWN  355 (392)
Q Consensus       295 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~  355 (392)
                      ..+|.|.++.+.++|+.++.+.+..++--+   +..-...-..+....+.+++-+-|+.+++|.
T Consensus       444 ~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  444 ILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            899999999999999999999887654322   1111111112222334455556689999995

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=9.1e-31  Score=235.51  Aligned_cols=240  Identities=15%  Similarity=0.183  Sum_probs=186.9

Q ss_pred             EeeCCCCCeeEEEEcC-CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCC-CEEEEEeCCCc
Q 016257           58 VFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGH  135 (392)
Q Consensus        58 ~~~~h~~~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~  135 (392)
                      .+.+|.+.|++++|+| ++++|++|+.|++|++||+..................|...|.+++|+|++ ++|++++.|++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            4789999999999999 888999999999999999976532111100001122478899999999975 69999999999


Q ss_pred             EEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (392)
Q Consensus       136 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (392)
                      |++||+++++....+..|...|.+++|+|++.+|++++.|++|++||+++++.+..+..|.......+.|.+++..+ +.
T Consensus       150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i-vt  228 (493)
T PTZ00421        150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI-IT  228 (493)
T ss_pred             EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE-EE
Confidence            99999999988877778888999999999999999999999999999999998888877665455678899887751 11


Q ss_pred             EEEEeCCccEEEEEeCCCcee-eeeeccc-CCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCceeeeeeeccccCcceE
Q 016257          216 CTVQRGDKALLAVYDISTWNK-IGHKRLL-RKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIA  292 (392)
Q Consensus       216 ~~~~~~~d~~i~v~d~~~~~~-~~~~~~~-~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~  292 (392)
                      ...+.+.|+.|++||+++... +.....+ ...+....|++++++|++++ .|+.|++||+.+++........+ ..++.
T Consensus       229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~  307 (493)
T PTZ00421        229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHK  307 (493)
T ss_pred             EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCc
Confidence            111224689999999987543 3222222 34555678899999999887 59999999999988766553334 66788


Q ss_pred             EEEEeeC
Q 016257          293 LVEFCPT  299 (392)
Q Consensus       293 ~~~~s~~  299 (392)
                      .++|.|.
T Consensus       308 g~~~~pk  314 (493)
T PTZ00421        308 GLCMMPK  314 (493)
T ss_pred             ceEeccc
Confidence            8988885

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=5.2e-31  Score=214.15  Aligned_cols=263  Identities=16%  Similarity=0.132  Sum_probs=218.8

Q ss_pred             CcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC---eEEEEeCCCeEEEEEEeCCccceeeccccCCCC
Q 016257           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD---DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL  109 (392)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~---~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  109 (392)
                      .|+.+++|...         +.....+.||.++|.+++|.-...   .|++++.|.++++|..+.++.........   .
T Consensus       123 YDg~~riWd~~---------Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~---~  190 (423)
T KOG0313|consen  123 YDGTSRIWDLK---------GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVC---R  190 (423)
T ss_pred             cCCeeEEEecC---------CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHh---c
Confidence            47789999874         345567889999999888854333   59999999999999998877544433221   1


Q ss_pred             CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC-------------------------CceeecccCCCCcEEEEEecC
Q 016257          110 QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-------------------------LRIILDEPKAHKSVLDMDFSL  164 (392)
Q Consensus       110 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-------------------------~~~~~~~~~~~~~i~~i~~~~  164 (392)
                      .|...|.+++..++|..+++|+.|.+|.+|+.++                         +.++..+.+|..+|.++.|++
T Consensus       191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d  270 (423)
T KOG0313|consen  191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD  270 (423)
T ss_pred             ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence            5899999999999999999999999999999321                         123445567888999999998


Q ss_pred             CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce---eeeeec
Q 016257          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---KIGHKR  241 (392)
Q Consensus       165 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~  241 (392)
                       ...+++++.|.+|+.||+.++..+.++....  .+.++..+|....     +++++.|..|++||.+++.   ....+.
T Consensus       271 -~~v~yS~SwDHTIk~WDletg~~~~~~~~~k--sl~~i~~~~~~~L-----l~~gssdr~irl~DPR~~~gs~v~~s~~  342 (423)
T KOG0313|consen  271 -ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK--SLNCISYSPLSKL-----LASGSSDRHIRLWDPRTGDGSVVSQSLI  342 (423)
T ss_pred             -CCceEeecccceEEEEEeecccceeeeecCc--ceeEeecccccce-----eeecCCCCceeecCCCCCCCceeEEeee
Confidence             6689999999999999999999988887543  6999999998776     8999999999999999764   346778


Q ss_pred             ccCCCcEEEEECCCC-CEEEEEeCCCcEEEEecCCce-eeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          242 LLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKME-INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       242 ~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      +|.+.|.++.|+|.. ..|++|+.|+++++||+++.+ .+..+ .+| ...|.++.|+ ++..|++|+.|++++|+.-.
T Consensus       343 gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI-~~h-~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  343 GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI-AGH-NDKVLSVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee-ccC-CceEEEEecc-CCceEEeccCcceEEEeccc
Confidence            999999999999965 568899999999999999988 66665 688 9999999997 56789999999999998654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.5e-30  Score=204.44  Aligned_cols=287  Identities=14%  Similarity=0.180  Sum_probs=224.5

Q ss_pred             EeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC--CCc
Q 016257           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGH  135 (392)
Q Consensus        58 ~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~  135 (392)
                      .|..-.+.|+++.|+++|..|++++.|.++++||..+++....+..+       .-.+..++|....+.++.++.  |.+
T Consensus         9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk-------kyG~~~~~Fth~~~~~i~sStk~d~t   81 (311)
T KOG1446|consen    9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK-------KYGVDLACFTHHSNTVIHSSTKEDDT   81 (311)
T ss_pred             ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc-------cccccEEEEecCCceEEEccCCCCCc
Confidence            35555789999999999999999999999999999999876666543       346788888877667776665  889


Q ss_pred             EEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (392)
Q Consensus       136 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (392)
                      |+..++.+.+.++-+.+|...|.+++.+|-+..+++++.|++|++||++..++...+....   -..++|+|+|-.    
T Consensus        82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~---~pi~AfDp~GLi----  154 (311)
T KOG1446|consen   82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG---RPIAAFDPEGLI----  154 (311)
T ss_pred             eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC---CcceeECCCCcE----
Confidence            9999999999999999999999999999999999999999999999999888877765443   356899999985    


Q ss_pred             EEEEeCCccEEEEEeCCCc--eeeeeec---ccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCc-
Q 016257          216 CTVQRGDKALLAVYDISTW--NKIGHKR---LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT-  289 (392)
Q Consensus       216 ~~~~~~~d~~i~v~d~~~~--~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-  289 (392)
                       ++.+.....|++||+|..  .+...+.   ......+.+.|||||++++.++..+.+++.|.-+|..+..+....... 
T Consensus       155 -fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~  233 (311)
T KOG1446|consen  155 -FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN  233 (311)
T ss_pred             -EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC
Confidence             566666669999999964  2333333   335678999999999999999999999999999999777663221111 


Q ss_pred             ceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeee--eeeeeeeeeceEEEEeeecceeeeeccccc
Q 016257          290 SIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIY--SLLLALFLASAVVFYIFFENSDSFWNFPVA  359 (392)
Q Consensus       290 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~  359 (392)
                      ..-...|+||++++++|+.||+|.+|+++.+.....+...  ....+..........++.+..+.+|-....
T Consensus       234 ~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~  305 (311)
T KOG1446|consen  234 LPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPDED  305 (311)
T ss_pred             cceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecccc
Confidence            2357789999999999999999999999887766555331  112222233444444556788999976533

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=5.1e-32  Score=222.23  Aligned_cols=281  Identities=15%  Similarity=0.194  Sum_probs=233.7

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .+++..+.|.++..   .+++|+.      |..|++|.......      ....+|.|..+.|+++.|.+++..+++++.
T Consensus       175 ~gev~~v~~l~~sd---tlatgg~------Dr~Ik~W~v~~~k~------~~~~tLaGs~g~it~~d~d~~~~~~iAas~  239 (459)
T KOG0288|consen  175 EGEVHDVEFLRNSD---TLATGGS------DRIIKLWNVLGEKS------ELISTLAGSLGNITSIDFDSDNKHVIAASN  239 (459)
T ss_pred             ccccceeEEccCcc---hhhhcch------hhhhhhhhcccchh------hhhhhhhccCCCcceeeecCCCceEEeecC
Confidence            46788899998863   3665554      77799999875542      233457788899999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      |+.+++|++...+...++..       |.+.|+++.|......+++|+.|.+|++||+....+..+.. ....+.+|..+
T Consensus       240 d~~~r~Wnvd~~r~~~TLsG-------HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~  311 (459)
T KOG0288|consen  240 DKNLRLWNVDSLRLRHTLSG-------HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS  311 (459)
T ss_pred             CCceeeeeccchhhhhhhcc-------cccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec
Confidence            99999999998876555443       78999999998877779999999999999999877765443 33456666666


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeeccc
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~  243 (392)
                        ...++++-.|++|++||++...+......+.  .|+++..++++..     +.+++.|..+.+.|+++.+....+...
T Consensus       312 --~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~-----lLsssRDdtl~viDlRt~eI~~~~sA~  382 (459)
T KOG0288|consen  312 --ISDVISGHFDKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLE-----LLSSSRDDTLKVIDLRTKEIRQTFSAE  382 (459)
T ss_pred             --ceeeeecccccceEEEeccCCceeeEeecCc--ceeeEeeccCCeE-----EeeecCCCceeeeecccccEEEEeecc
Confidence              4568889999999999999999988887553  7999999999998     788899999999999998877666543


Q ss_pred             ----CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEE
Q 016257          244 ----RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (392)
Q Consensus       244 ----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  316 (392)
                          ....+.+.|||++.|+++|+.||.|+||++.++++.......+....|++++|+|.|..|++++.++.+.+|.
T Consensus       383 g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  383 GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence                2457889999999999999999999999999999988876555234799999999999999999999999993

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2e-32  Score=221.09  Aligned_cols=287  Identities=12%  Similarity=0.163  Sum_probs=233.6

Q ss_pred             EEeeCCCCCeeEEEEcCCC-CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCc
Q 016257           57 YVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (392)
Q Consensus        57 ~~~~~h~~~v~~~~~sp~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  135 (392)
                      ..|.||.+.|.|++=+|.. ..+++|+.||.|+|||+...++...+..       |.+.|..+++..  ..+++++.|.+
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~A-------H~G~V~Gi~v~~--~~~~tvgdDKt  130 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKA-------HEGLVRGICVTQ--TSFFTVGDDKT  130 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeec-------ccCceeeEEecc--cceEEecCCcc
Confidence            3579999999999999977 6899999999999999998877666543       788999999987  57888899999


Q ss_pred             EEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (392)
Q Consensus       136 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (392)
                      |+.|-++.. .. ........+..+.-+..+..++++++  .|.|||.+...++..+..+.+ .+.++.|+|....+   
T Consensus       131 vK~wk~~~~-p~-~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsI---  202 (433)
T KOG0268|consen  131 VKQWKIDGP-PL-HTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSI---  202 (433)
T ss_pred             eeeeeccCC-cc-eeeeccccccccccccccccccccCc--eeeecccccCCccceeecCCC-ceeEEecCCCcchh---
Confidence            999998652 32 23334456777877777788998875  599999999999999988776 69999999998863   


Q ss_pred             EEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEE
Q 016257          216 CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVE  295 (392)
Q Consensus       216 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  295 (392)
                       +++++.|+.|.+||+++..+++.... ...-+.++|+|++-.++++++|..++.||++..+.......+| .+.|.+++
T Consensus       203 -Las~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh-vsAV~dVd  279 (433)
T KOG0268|consen  203 -LASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH-VSAVMDVD  279 (433)
T ss_pred             -eeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhccc-ceeEEEec
Confidence             67888999999999999988765543 4455689999988889999999999999999988777677899 99999999


Q ss_pred             EeeCCCeEEEEeCCCeEEEEEeecCccccceeee---eeee-eeeeeceEEEEeeecceeeeeccccccccc
Q 016257          296 FCPTQRVVLTASKEWGAMITKLTVPADWKEWQIY---SLLL-ALFLASAVVFYIFFENSDSFWNFPVARNQH  363 (392)
Q Consensus       296 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~  363 (392)
                      |||.|+-+++||.|.+|+||..+..+...++..-   .... .....+..+++++.|+.||+|.....+.+-
T Consensus       280 fsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  280 FSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             cCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence            9999999999999999999999977665443211   1111 112355677888889999999988776553

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=9.7e-30  Score=228.88  Aligned_cols=252  Identities=14%  Similarity=0.112  Sum_probs=193.5

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeec------cccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcE
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLL------AKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHL  136 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i  136 (392)
                      ..|.....++++..+++++.+.....|+...+.......      ........|.+.|.+++|+| ++++|++|+.|++|
T Consensus        21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI  100 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI  100 (493)
T ss_pred             eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence            345556666776667777777777777755443221111      00011235889999999999 88999999999999


Q ss_pred             EEEeCCCCc-------eeecccCCCCcEEEEEecCCC-CeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCC
Q 016257          137 RIMHWPSLR-------IILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD  208 (392)
Q Consensus       137 ~i~d~~~~~-------~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (392)
                      ++||+.++.       .+..+.+|...|.+++|+|++ ++|++++.|++|++||+++++....+..+. ..|.+++|+|+
T Consensus       101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~-~~V~sla~spd  179 (493)
T PTZ00421        101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS-DQITSLEWNLD  179 (493)
T ss_pred             EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC-CceEEEEEECC
Confidence            999997652       345567787899999999975 689999999999999999998888877654 47999999999


Q ss_pred             CCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCC-cEEEEECCCCCEEEEEe----CCCcEEEEecCCceeeeeee
Q 016257          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKP-ASVLSISLDGKYLAMGS----KDGDICVVDVKKMEINHWSK  283 (392)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~  283 (392)
                      +..     +++++.|+.|++||+++++.+..+..|... ...+.|.+++..+++++    .|+.|++||+++........
T Consensus       180 G~l-----Latgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~  254 (493)
T PTZ00421        180 GSL-----LCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV  254 (493)
T ss_pred             CCE-----EEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEe
Confidence            986     799999999999999999988888777654 45678999887777654    47899999998765333222


Q ss_pred             ccccCcceEEEEEeeCCCeEEEEe-CCCeEEEEEeecCc
Q 016257          284 RLHLGTSIALVEFCPTQRVVLTAS-KEWGAMITKLTVPA  321 (392)
Q Consensus       284 ~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~  321 (392)
                      ..+....+....|++++.+|++++ .|+.|++|++....
T Consensus       255 ~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~  293 (493)
T PTZ00421        255 DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER  293 (493)
T ss_pred             ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence            233245667778999999998887 59999999998654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.98  E-value=2e-30  Score=210.70  Aligned_cols=276  Identities=16%  Similarity=0.166  Sum_probs=217.0

Q ss_pred             CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCC---CEEEEEeCCCcEE
Q 016257           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG---SRFAAGGVDGHLR  137 (392)
Q Consensus        61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~  137 (392)
                      -|.+.|.++...  ++.+++|+.||.+++||..... .....       .|.+++.+++|....   ..|++++.|.+++
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~-~~~~~-------Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~  172 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS-IKTIV-------GHTGPIKSVAWVIKNSSSCLFVSASMDQTLR  172 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecCCce-EEEEe-------cCCcceeeeEEEecCCccceEEEecCCceEE
Confidence            378888888887  6799999999999999987543 32222       478899988885433   3599999999999


Q ss_pred             EEeCCCCcee----ecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCC-------------------------Cee
Q 016257          138 IMHWPSLRII----LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-------------------------GVA  188 (392)
Q Consensus       138 i~d~~~~~~~----~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~-------------------------~~~  188 (392)
                      +|.++.++..    ....+|...|.++...+++..+++|+.|..+++|+..+                         +.+
T Consensus       173 Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P  252 (423)
T KOG0313|consen  173 LWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTP  252 (423)
T ss_pred             EEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCc
Confidence            9999876543    22347778999999999999999999999999999321                         123


Q ss_pred             eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcE
Q 016257          189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDI  268 (392)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  268 (392)
                      +.++.+| .++|.++.|++.+.      +++++.|.+|+.||+.++..+..+.. .....+++.+|..++|++|+.|..|
T Consensus       253 ~vtl~GH-t~~Vs~V~w~d~~v------~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~i  324 (423)
T KOG0313|consen  253 LVTLEGH-TEPVSSVVWSDATV------IYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHI  324 (423)
T ss_pred             eEEeccc-ccceeeEEEcCCCc------eEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCce
Confidence            4444444 55899999999655      79999999999999999988877665 5689999999999999999999999


Q ss_pred             EEEecCCc--eeeeeeeccccCcceEEEEEeeCCC-eEEEEeCCCeEEEEEeecCccccceee----eeeeeeeeeeceE
Q 016257          269 CVVDVKKM--EINHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLTVPADWKEWQI----YSLLLALFLASAV  341 (392)
Q Consensus       269 ~iwd~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~  341 (392)
                      ++||.+++  ........+| ...|.++.|+|... .|++|+.|+++++||++.... +.+.+    ...+.........
T Consensus       325 rl~DPR~~~gs~v~~s~~gH-~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~-plydI~~h~DKvl~vdW~~~~~  402 (423)
T KOG0313|consen  325 RLWDPRTGDGSVVSQSLIGH-KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA-PLYDIAGHNDKVLSVDWNEGGL  402 (423)
T ss_pred             eecCCCCCCCceeEEeeecc-hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC-cceeeccCCceEEEEeccCCce
Confidence            99999875  4555555799 88999999999766 688999999999999997652 11211    1122222334558


Q ss_pred             EEEeeecceeeeecc
Q 016257          342 VFYIFFENSDSFWNF  356 (392)
Q Consensus       342 ~~~~~~d~~i~~W~~  356 (392)
                      +++++.|.++++...
T Consensus       403 IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  403 IVSGGADNKLRIFKG  417 (423)
T ss_pred             EEeccCcceEEEecc
Confidence            888999999998764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=9.8e-30  Score=202.06  Aligned_cols=268  Identities=18%  Similarity=0.224  Sum_probs=212.6

Q ss_pred             cCceeEEEEcCCCCc----cccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCC
Q 016257           34 PSVLEIFSFDPKTTS----VYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL  109 (392)
Q Consensus        34 ~~~i~i~~~~~~~~~----~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  109 (392)
                      ...|.-+.+++....    ........+.+..|.+++++++.  ++.++|+|+.|.+|+|||+........+.       
T Consensus        10 E~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll-------   80 (362)
T KOG0294|consen   10 EHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL-------   80 (362)
T ss_pred             eeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee-------
Confidence            444555566554411    11122235567889999999999  58899999999999999998876544443       


Q ss_pred             CCCCCeEEEEecCCCC--EEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 016257          110 QDAGPQKCLSFSVDGS--RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV  187 (392)
Q Consensus       110 ~~~~~v~~~~~s~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~  187 (392)
                      .|.+.|+++.|.++-.  .|++|+.||.|.+|+......+..+..|.+.|+.++.+|.+++.++.+.|+.+++||+-+++
T Consensus        81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen   81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence            3789999999998765  89999999999999999999998999999999999999999999999999999999999888


Q ss_pred             eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCc
Q 016257          188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD  267 (392)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  267 (392)
                      .-..+...+.  .+.+.|+|.|.+     ++... ...|-+|.+.+......+... ..+.++.|- ++..|++|..|+.
T Consensus       161 ~a~v~~L~~~--at~v~w~~~Gd~-----F~v~~-~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~  230 (362)
T KOG0294|consen  161 VAFVLNLKNK--ATLVSWSPQGDH-----FVVSG-RNKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNEW  230 (362)
T ss_pred             cceeeccCCc--ceeeEEcCCCCE-----EEEEe-ccEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCce
Confidence            7766655443  456999999997     33333 456899998876655444432 446666664 5678999999999


Q ss_pred             EEEEecCCceeeeeeeccccCcceEEEEE--eeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257          268 ICVVDVKKMEINHWSKRLHLGTSIALVEF--CPTQRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       268 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                      |.+||.....+...+ .+| ...|.++.+  .|++.+|+++|.||.|++||++....
T Consensus       231 i~~~D~ds~~~~~~~-~AH-~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k  285 (362)
T KOG0294|consen  231 ISLKDTDSDTPLTEF-LAH-ENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK  285 (362)
T ss_pred             EEEeccCCCccceee-ecc-hhheeeeEEEecCCceEEEEeccCceEEEEEcccccc
Confidence            999999987777666 689 999999985  35678999999999999999986544

>PTZ00420 coronin; Provisional

Probab=99.98  E-value=3.9e-29  Score=225.99  Aligned_cols=254  Identities=9%  Similarity=0.090  Sum_probs=185.1

Q ss_pred             CCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCC-CCeEEEEeCCCeEEEEEEeCCccc-eeeccccCCCC
Q 016257           32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATD-INLLAKKMPPL  109 (392)
Q Consensus        32 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-~~~l~~~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~  109 (392)
                      |..+.+++|....        ......+.+|.+.|.+++|+|+ +++|++|+.|++|+|||+.+.... ...........
T Consensus        51 G~~gvI~L~~~~r--------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~  122 (568)
T PTZ00420         51 GLIGAIRLENQMR--------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK  122 (568)
T ss_pred             CceeEEEeeecCC--------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee
Confidence            3466778876542        2244678899999999999996 789999999999999999764321 11000000112


Q ss_pred             CCCCCeEEEEecCCCCE-EEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee
Q 016257          110 QDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA  188 (392)
Q Consensus       110 ~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~  188 (392)
                      .|...|.+++|+|++.. |++++.|++|++||+++++....+. +...|.+++|+|+|.+|++++.|+.|++||+++++.
T Consensus       123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~  201 (568)
T PTZ00420        123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI  201 (568)
T ss_pred             cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE
Confidence            47789999999998875 5788999999999999988765553 556899999999999999999999999999999999


Q ss_pred             eEEEecCCCcc----eEEEEecCCCCcceEEEEEEeCCc----cEEEEEeCCC-ceeeeeeccc--CCCcEEEEECCCCC
Q 016257          189 WTFLTRNSDEK----IELCRFSKDGTKPFLFCTVQRGDK----ALLAVYDIST-WNKIGHKRLL--RKPASVLSISLDGK  257 (392)
Q Consensus       189 ~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~d----~~i~v~d~~~-~~~~~~~~~~--~~~v~~~~~s~~~~  257 (392)
                      +..+..|....    +....|++++..     +++++.+    +.|++||++. .+++.....+  ...+......++|.
T Consensus       202 i~tl~gH~g~~~s~~v~~~~fs~d~~~-----IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~  276 (568)
T PTZ00420        202 ASSFHIHDGGKNTKNIWIDGLGGDDNY-----ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL  276 (568)
T ss_pred             EEEEecccCCceeEEEEeeeEcCCCCE-----EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC
Confidence            88887765421    122335578776     5665544    4899999995 4455443322  22333333355689


Q ss_pred             EEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCC
Q 016257          258 YLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (392)
Q Consensus       258 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  300 (392)
                      ++++|+.|+.|++|++..+.....- ......++.+++|.|..
T Consensus       277 l~lsGkGD~tIr~~e~~~~~~~~l~-~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        277 IYLIGKGDGNCRYYQHSLGSIRKVN-EYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEEEEECCCeEEEEEccCCcEEeec-ccccCCCccceEEcccc
Confidence            9999999999999999877543322 22226788999999964

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=1.4e-31  Score=216.18  Aligned_cols=280  Identities=14%  Similarity=0.150  Sum_probs=227.8

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCC
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~   85 (392)
                      .|.|++=+|..  +..+++|+.      ||.+++|++.        ...+...++.|.+.|..++++.  ..+++++.|.
T Consensus        68 GV~~lakhp~~--ls~~aSGs~------DG~VkiWnls--------qR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDK  129 (433)
T KOG0268|consen   68 GVSCLAKHPNK--LSTVASGSC------DGEVKIWNLS--------QRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDK  129 (433)
T ss_pred             ccchhhcCcch--hhhhhcccc------CceEEEEehh--------hhhhhheeecccCceeeEEecc--cceEEecCCc
Confidence            57888888854  346776666      7779999998        5566678999999999999976  6788889999


Q ss_pred             eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCC
Q 016257           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD  165 (392)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~  165 (392)
                      +|+.|.++.. ....+        ...+.+..+.-+..+..+++++.  .|.|||.+-..++..+.-....|.++.|+|.
T Consensus       130 tvK~wk~~~~-p~~ti--------lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpv  198 (433)
T KOG0268|consen  130 TVKQWKIDGP-PLHTI--------LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPV  198 (433)
T ss_pred             ceeeeeccCC-cceee--------eccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCC
Confidence            9999998763 22222        23456677777777778888875  4999999888888888878889999999995


Q ss_pred             C-CeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce-eeeeeccc
Q 016257          166 S-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLL  243 (392)
Q Consensus       166 ~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~  243 (392)
                      . ..|+++..|+.|.+||++++++++.+....  .-..++|+|..-.     +.++.+|..++.||++... ++.....|
T Consensus       199 ETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m--RTN~IswnPeafn-----F~~a~ED~nlY~~DmR~l~~p~~v~~dh  271 (433)
T KOG0268|consen  199 ETSILASCASDRSIVLYDLRQASPLKKVILTM--RTNTICWNPEAFN-----FVAANEDHNLYTYDMRNLSRPLNVHKDH  271 (433)
T ss_pred             cchheeeeccCCceEEEecccCCccceeeeec--cccceecCccccc-----eeeccccccceehhhhhhcccchhhccc
Confidence            5 467778899999999999999998876544  4688999995443     6889999999999999754 56677889


Q ss_pred             CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                      ...|.+++|||.|+-+++|+.|.+|+||....+........-. -..|.++.||.|.+++++||+|+.|++|.-...+.
T Consensus       272 vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR-Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek  349 (433)
T KOG0268|consen  272 VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR-MQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK  349 (433)
T ss_pred             ceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh-hheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence            9999999999999999999999999999998876554443322 56799999999999999999999999998874433

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=6.9e-30  Score=214.10  Aligned_cols=284  Identities=14%  Similarity=0.147  Sum_probs=218.1

Q ss_pred             CCCeeEEEEcCCCC-eEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC
Q 016257           63 EGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (392)
Q Consensus        63 ~~~v~~~~~sp~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~  141 (392)
                      .+.|.+++|+|... -+|+.+. -.+.||+..+......+..       ....+.++.|-.||++|++|...|.|++||+
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~sr-------Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~   97 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSR-------FKDVVYSVDFRSDGRLLAAGDESGHVKVFDM   97 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHh-------hccceeEEEeecCCeEEEccCCcCcEEEecc
Confidence            46899999999665 3555444 4599999887765443332       3468999999999999999999999999997


Q ss_pred             CCCceeecccCCCCcEEEEEecCC-CCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEe
Q 016257          142 PSLRIILDEPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (392)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (392)
                      .+...+..+..|..++..+.|+|+ +..+++|+.|+.+++||+.+......+..|. ..|++.+|+|...++    +++|
T Consensus        98 k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht-DYVR~g~~~~~~~hi----vvtG  172 (487)
T KOG0310|consen   98 KSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT-DYVRCGDISPANDHI----VVTG  172 (487)
T ss_pred             ccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc-ceeEeeccccCCCeE----EEec
Confidence            776666777888889999999995 4567888899999999999888655666554 589999999988763    7999


Q ss_pred             CCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCC
Q 016257          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (392)
Q Consensus       221 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  300 (392)
                      +.||.|++||.+..........|+.+|..+.+-|.|..+++++. ..|++||+.+|.........| ...|+|+.+..++
T Consensus       173 sYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H-~KtVTcL~l~s~~  250 (487)
T KOG0310|consen  173 SYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNH-NKTVTCLRLASDS  250 (487)
T ss_pred             CCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcc-cceEEEEEeecCC
Confidence            99999999999987544445568999999999999999999885 569999999654443333448 8999999999999


Q ss_pred             CeEEEEeCCCeEEEEEeecCccccceeeeeeeeeeee--eceEEEEeeecceeeeeccccccc
Q 016257          301 RVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFL--ASAVVFYIFFENSDSFWNFPVARN  361 (392)
Q Consensus       301 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~W~~~~~~~  361 (392)
                      ..|++|+-|+.+++|++..-+-...|...-.+..+.+  ....++.+..+|.+.+=.....++
T Consensus       251 ~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k  313 (487)
T KOG0310|consen  251 TRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKK  313 (487)
T ss_pred             ceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeeehhhcccC
Confidence            9999999999999999764443334433333333322  234556666777766665444433

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.98  E-value=3.1e-30  Score=217.54  Aligned_cols=297  Identities=15%  Similarity=0.185  Sum_probs=215.0

Q ss_pred             CCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe
Q 016257           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (392)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  131 (392)
                      .......+++|+..|.++++.|.|..|++|+.|.+|++||+..............+  .....|+++.|++.|..|++.+
T Consensus       156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--~E~h~i~sl~ys~Tg~~iLvvs  233 (641)
T KOG0772|consen  156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--CETHQINSLQYSVTGDQILVVS  233 (641)
T ss_pred             CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc--ccccccceeeecCCCCeEEEEe
Confidence            34566789999999999999999999999999999999999876543332211111  1345899999999999999988


Q ss_pred             CCCcEEEEeCCCCcee------------ecccCCCCcEEEEEecCCC-CeEEEEcCCCcEEEEECCCCeee-EEEe----
Q 016257          132 VDGHLRIMHWPSLRII------------LDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAW-TFLT----  193 (392)
Q Consensus       132 ~dg~i~i~d~~~~~~~------------~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~-~~~~----  193 (392)
                      .....+++|-...+..            ....+|...+++.+|+|+. ..+++++.||++++||+.+.+.. ..+.    
T Consensus       234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~  313 (641)
T KOG0772|consen  234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA  313 (641)
T ss_pred             cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence            8889999985432221            1224555689999999965 57999999999999999865432 2332    


Q ss_pred             cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee---eeeecccCC--CcEEEEECCCCCEEEEEeCCCcE
Q 016257          194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLRK--PASVLSISLDGKYLAMGSKDGDI  268 (392)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i  268 (392)
                      ....-+++.++|+|+++.     ++++..||.|.+|+..+...   ......|..  .|++++||+||++|++-+.|+++
T Consensus       314 ~g~Rv~~tsC~~nrdg~~-----iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL  388 (641)
T KOG0772|consen  314 GGKRVPVTSCAWNRDGKL-----IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL  388 (641)
T ss_pred             CCcccCceeeecCCCcch-----hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCce
Confidence            233447899999999998     79999999999999865432   223345554  89999999999999999999999


Q ss_pred             EEEecCCceeeeeeec-cccCcceEEEEEeeCCCeEEEEeC------CCeEEEEEeecCccccce---eeeeeeeeeeee
Q 016257          269 CVVDVKKMEINHWSKR-LHLGTSIALVEFCPTQRVVLTASK------EWGAMITKLTVPADWKEW---QIYSLLLALFLA  338 (392)
Q Consensus       269 ~iwd~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~---~~~~~~~~~~~~  338 (392)
                      ++||++..+....... .....+-+.++|||+.++|++|+.      .|.+.+++..+-......   ...+........
T Consensus       389 KvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whpk  468 (641)
T KOG0772|consen  389 KVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPK  468 (641)
T ss_pred             eeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecch
Confidence            9999998654332211 122456788999999999999874      367888876544322111   111111111223


Q ss_pred             ceEEEEeeecceeeeec
Q 016257          339 SAVVFYIFFENSDSFWN  355 (392)
Q Consensus       339 ~~~~~~~~~d~~i~~W~  355 (392)
                      -+.+++++.||.++++=
T Consensus       469 LNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  469 LNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             hhheeeecCCCceEEEE
Confidence            45677788899888763

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.7e-28  Score=195.45  Aligned_cols=283  Identities=13%  Similarity=0.111  Sum_probs=225.5

Q ss_pred             CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe
Q 016257            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (392)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~   82 (392)
                      -+++|.++.|+++++.  +++       +..++.+++|+..        .+....++..+.-.|..++|......++.++
T Consensus        13 ~~~~i~sl~fs~~G~~--lit-------ss~dDsl~LYd~~--------~g~~~~ti~skkyG~~~~~Fth~~~~~i~sS   75 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLL--LIT-------SSEDDSLRLYDSL--------SGKQVKTINSKKYGVDLACFTHHSNTVIHSS   75 (311)
T ss_pred             CCCceeEEEecCCCCE--EEE-------ecCCCeEEEEEcC--------CCceeeEeecccccccEEEEecCCceEEEcc
Confidence            3689999999999954  444       3457789999886        5555566777777899999977777777666


Q ss_pred             C--CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEE
Q 016257           83 T--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (392)
Q Consensus        83 ~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i  160 (392)
                      .  |.+|+..++.+.+.+..+..       |...|..++.+|-+..+++++.|++|++||++..++...+.....+  .+
T Consensus        76 tk~d~tIryLsl~dNkylRYF~G-------H~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~  146 (311)
T KOG1446|consen   76 TKEDDTIRYLSLHDNKYLRYFPG-------HKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IA  146 (311)
T ss_pred             CCCCCceEEEEeecCceEEEcCC-------CCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ce
Confidence            5  88999999999987766654       7899999999998899999999999999999977765544433333  46


Q ss_pred             EecCCCCeEEEEcCCCcEEEEECCCC--eeeEEEec--CCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee
Q 016257          161 DFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTR--NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (392)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~vwd~~~~--~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~  236 (392)
                      +|+|.|-++|++.....|++||++.-  .+..++..  ......+.+.|+|+|+.     ++.+...+.+++.|.-+|..
T Consensus       147 AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~-----iLlsT~~s~~~~lDAf~G~~  221 (311)
T KOG1446|consen  147 AFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS-----ILLSTNASFIYLLDAFDGTV  221 (311)
T ss_pred             eECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE-----EEEEeCCCcEEEEEccCCcE
Confidence            89999999999988779999999853  33344432  33446889999999997     78888899999999999988


Q ss_pred             eeeecccCCCc---EEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEE
Q 016257          237 IGHKRLLRKPA---SVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAM  313 (392)
Q Consensus       237 ~~~~~~~~~~v---~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  313 (392)
                      +..+..+...-   -..+|+||++++++|+.||+|.+|++++++........+ .+++.++.|+|.-.++++++  ..+.
T Consensus       222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~-~~~~~~~~fnP~~~mf~sa~--s~l~  298 (311)
T KOG1446|consen  222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPN-GGPVSCVRFNPRYAMFVSAS--SNLV  298 (311)
T ss_pred             eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCC-CCCccccccCCceeeeeecC--ceEE
Confidence            87776654332   567899999999999999999999999999888775546 88999999999866666654  5688


Q ss_pred             EEEeec
Q 016257          314 ITKLTV  319 (392)
Q Consensus       314 iw~~~~  319 (392)
                      +|-...
T Consensus       299 fw~p~~  304 (311)
T KOG1446|consen  299 FWLPDE  304 (311)
T ss_pred             EEeccc
Confidence            886653

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=9.9e-30  Score=229.07  Aligned_cols=280  Identities=14%  Similarity=0.152  Sum_probs=234.5

Q ss_pred             CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEe
Q 016257           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (392)
Q Consensus        61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d  140 (392)
                      .|...+.+..|+  ..++++++.+.+|++|+..++......      ...|.+.|.++++..-+.+|++|+.|.++++||
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~------l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd  277 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTR------LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD  277 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEee------ccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence            356788899998  558999999999999999888754441      224889999999988788999999999999999


Q ss_pred             CCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEe
Q 016257          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (392)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (392)
                      ..++++...+.+|.+.+.++...  ...+++|+.|.+|++|+++++..+..+.+ +.++|+++..+  +..     ++++
T Consensus       278 ~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~~~--~~~-----lvsg  347 (537)
T KOG0274|consen  278 CSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRG-HTGPVNCVQLD--EPL-----LVSG  347 (537)
T ss_pred             cCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecc-ccccEEEEEec--CCE-----EEEE
Confidence            99999999999999999988776  45688899999999999999999999887 55689999998  443     7999


Q ss_pred             CCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCc-eeeeeeeccccCcceEEEEEeeC
Q 016257          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM-EINHWSKRLHLGTSIALVEFCPT  299 (392)
Q Consensus       221 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~  299 (392)
                      +.|+.|++||..+++++..+.+|...|.++.+.+. ..+++|+.|+.|++||+.+. +++..+ .+| ..-+..+.+  .
T Consensus       348 s~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl-~~h-~~~v~~l~~--~  422 (537)
T KOG0274|consen  348 SYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL-QGH-TSLVSSLLL--R  422 (537)
T ss_pred             ecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh-cCC-ccccccccc--c
Confidence            99999999999999999999999999999988765 89999999999999999999 777766 577 777766665  6


Q ss_pred             CCeEEEEeCCCeEEEEEeecCccccceeee--eeeeeeeeeceEEEEeeecceeeeeccccccccc
Q 016257          300 QRVVLTASKEWGAMITKLTVPADWKEWQIY--SLLLALFLASAVVFYIFFENSDSFWNFPVARNQH  363 (392)
Q Consensus       300 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~  363 (392)
                      +++|++++.|+.|++||....+...+....  .....+......++..+.|+.+++||++.+....
T Consensus       423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIR  488 (537)
T ss_pred             cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhh
Confidence            679999999999999999987766554432  1222222224677888899999999999887544

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=1.2e-29  Score=228.46  Aligned_cols=280  Identities=15%  Similarity=0.211  Sum_probs=233.5

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEE-eeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYV-FDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ..+.|..|+.+     .+..|..      +.+|.+|+..        ....... +.||.+.|.++++..-++.|++|+.
T Consensus       209 ~~~~~~q~~~~-----~~~~~s~------~~tl~~~~~~--------~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~  269 (537)
T KOG0274|consen  209 HVVLCLQLHDG-----FFKSGSD------DSTLHLWDLN--------NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGST  269 (537)
T ss_pred             chhhhheeecC-----eEEecCC------CceeEEeecc--------cceEEEeeccCCCCCceeEEEecCCCEEEEEec
Confidence            35666777732     3444444      6667788765        3333344 9999999999999876789999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      |.++++||..++++...+..       |.+.+.++...  +.++++|+.|.+|++|+++++..+..+.+|..+|.++..+
T Consensus       270 D~t~rvWd~~sg~C~~~l~g-------h~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~  340 (537)
T KOG0274|consen  270 DKTERVWDCSTGECTHSLQG-------HTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD  340 (537)
T ss_pred             CCcEEeEecCCCcEEEEecC-------CCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec
Confidence            99999999999998777653       67788888774  4478889999999999999999988887788899999998


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc-eeeeeecc
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRL  242 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~  242 (392)
                        +.++++|+.|++|++||+.++++++++.+|. ..|+++.+.+. ..     +++++.|+.|++||+++. +++..+..
T Consensus       341 --~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~-~~V~sl~~~~~-~~-----~~Sgs~D~~IkvWdl~~~~~c~~tl~~  411 (537)
T KOG0274|consen  341 --EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT-GRVYSLIVDSE-NR-----LLSGSLDTTIKVWDLRTKRKCIHTLQG  411 (537)
T ss_pred             --CCEEEEEecCceEEEEEhhhceeeeeecCCc-ceEEEEEecCc-ce-----EEeeeeccceEeecCCchhhhhhhhcC
Confidence              7899999999999999999999999999865 48999988876 43     799999999999999999 89999999


Q ss_pred             cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                      |..-+..+.+  .+++|++++.|++|++||..+++....+...| .+.|+.+++.  ...+++++.||++++||++.+..
T Consensus       412 h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~-~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~  486 (537)
T KOG0274|consen  412 HTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRH-VGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL  486 (537)
T ss_pred             Cccccccccc--ccceeEeccccccEEEeecccCceeeeeccCC-cccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence            8888866554  57899999999999999999999998885435 6888888876  45789999999999999998766


Q ss_pred             ccce
Q 016257          323 WKEW  326 (392)
Q Consensus       323 ~~~~  326 (392)
                      ...+
T Consensus       487 ~~~l  490 (537)
T KOG0274|consen  487 IRTL  490 (537)
T ss_pred             hhhh
Confidence            5433

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=4.2e-30  Score=203.82  Aligned_cols=297  Identities=11%  Similarity=0.115  Sum_probs=225.0

Q ss_pred             eEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCcc---ceeecc--------ccCCCCCCCCCeEEEEecCC
Q 016257           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT---DINLLA--------KKMPPLQDAGPQKCLSFSVD  123 (392)
Q Consensus        55 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~---~~~~~~--------~~~~~~~~~~~v~~~~~s~~  123 (392)
                      ....+..|.+++.+.+|+|||.++|+|+.|..|+|.|++..-.   ......        -......|...|+++.|+|.
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            4456788999999999999999999999999999999973210   000000        00112357889999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCce--eecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe--cCCCcc
Q 016257          124 GSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEK  199 (392)
Q Consensus       124 ~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~--~~~~~~  199 (392)
                      ...|++|+.|++|+++|+.....  ..+......+|.++.|+|.|.+|+.|..-.++++||+++-++...-.  ..+.+.
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a  263 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA  263 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence            99999999999999999964332  22333444589999999999999999999999999999887754432  345568


Q ss_pred             eEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec-cc-CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce
Q 016257          200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LL-RKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (392)
Q Consensus       200 v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  277 (392)
                      |+++.+++.++.     .++++.||.|++||--+++++..+. .| ...|.+..|..+|+|+++.+.|..+++|.+.++.
T Consensus       264 i~~V~Ys~t~~l-----YvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R  338 (430)
T KOG0640|consen  264 ITQVRYSSTGSL-----YVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR  338 (430)
T ss_pred             eeEEEecCCccE-----EEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence            999999999996     6999999999999999988887764 34 3579999999999999999999999999999999


Q ss_pred             eeeeeecccc---CcceEEEEEeeCCCeEEEEeC-CCeEEEEEeecCccccceeeee----eeeeeeeeceEEEEeeecc
Q 016257          278 INHWSKRLHL---GTSIALVEFCPTQRVVLTASK-EWGAMITKLTVPADWKEWQIYS----LLLALFLASAVVFYIFFEN  349 (392)
Q Consensus       278 ~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~  349 (392)
                      .+..+.....   ..--+...|+....+++.-.+ .+.+.-||-+.......|.+..    ....+........+++.|.
T Consensus       339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~  418 (430)
T KOG0640|consen  339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF  418 (430)
T ss_pred             eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence            8877643210   122345668777777766543 5788899988776655554322    1112222344556777899


Q ss_pred             eeeeecc
Q 016257          350 SDSFWNF  356 (392)
Q Consensus       350 ~i~~W~~  356 (392)
                      ..|+|--
T Consensus       419 raRFWyr  425 (430)
T KOG0640|consen  419 RARFWYR  425 (430)
T ss_pred             eeeeeee
Confidence            9999964

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=1.9e-29  Score=208.39  Aligned_cols=240  Identities=16%  Similarity=0.205  Sum_probs=211.1

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~  143 (392)
                      ..+.++...|..+.+++|+.|.++.++|...++....+..       |...|+.+.|+|+...+++++.|..|++|....
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~G-------h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~  292 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKG-------HTKKITSVKFHKDLDTVITASADEIIRVWSVPL  292 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccC-------cceEEEEEEeccchhheeecCCcceEEeecccc
Confidence            3688888888878999999999999999988876555443       678999999999999999999999999999987


Q ss_pred             CceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecC-CCcceEEEEecCCCCcceEEEEEEeCC
Q 016257          144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGD  222 (392)
Q Consensus       144 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~  222 (392)
                      .........|..+|+.+..+|.|.||++++.|++..+.|++++..+...... .+-.+++.+|+|||..     +.++..
T Consensus       293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLi-----fgtgt~  367 (506)
T KOG0289|consen  293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLI-----FGTGTP  367 (506)
T ss_pred             ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceE-----EeccCC
Confidence            7777777788889999999999999999999999999999999988777653 3346899999999986     789999


Q ss_pred             ccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCe
Q 016257          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV  302 (392)
Q Consensus       223 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  302 (392)
                      |+.+++||+.++..+..+.+|.++|..++|+.+|.+|++++.|+.|++||++..+....+.... ..++.++.|.+.|++
T Consensus       368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~-~~~v~s~~fD~SGt~  446 (506)
T KOG0289|consen  368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE-KKEVNSLSFDQSGTY  446 (506)
T ss_pred             CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc-cccceeEEEcCCCCe
Confidence            9999999999999999999999999999999999999999999999999999988777765444 568999999999999


Q ss_pred             EEEEeCCCeEEEEE
Q 016257          303 VLTASKEWGAMITK  316 (392)
Q Consensus       303 l~~~~~dg~i~iw~  316 (392)
                      |+.++.|=.|++++
T Consensus       447 L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  447 LGIAGSDLQVYICK  460 (506)
T ss_pred             EEeecceeEEEEEe
Confidence            99997775554444

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=1e-29  Score=214.44  Aligned_cols=293  Identities=17%  Similarity=0.202  Sum_probs=219.0

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d   84 (392)
                      --|.++++.|.+.|   +++|+-      |+.+++|.|..-...+..   ...........|.+++|++.|..|++.+..
T Consensus       168 k~Vsal~~Dp~GaR---~~sGs~------Dy~v~~wDf~gMdas~~~---fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~  235 (641)
T KOG0772|consen  168 KIVSALAVDPSGAR---FVSGSL------DYTVKFWDFQGMDASMRS---FRQLQPCETHQINSLQYSVTGDQILVVSGS  235 (641)
T ss_pred             eEEEEeeecCCCce---eeeccc------cceEEEEecccccccchh---hhccCcccccccceeeecCCCCeEEEEecC
Confidence            35888999998865   555554      888999999854333322   112223335579999999999999888888


Q ss_pred             CeEEEEEEeCCccceeecc-----ccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeecccCC-----
Q 016257           85 GGCKLFEVYGGATDINLLA-----KKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKA-----  153 (392)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----  153 (392)
                      ...+|+|-...+...-...     .-...-.|...++|.+|+|+ ...+++++.||++|+||+...+.......+     
T Consensus       236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g  315 (641)
T KOG0772|consen  236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG  315 (641)
T ss_pred             cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence            8899999765543222211     11223357889999999995 457899999999999999765433222211     


Q ss_pred             -CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCC--eeeEEEecCCCc--ceEEEEecCCCCcceEEEEEEeCCccEEEE
Q 016257          154 -HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDE--KIELCRFSKDGTKPFLFCTVQRGDKALLAV  228 (392)
Q Consensus       154 -~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v  228 (392)
                       .-+++.++|++|+++||+|..||.|.+|+....  .+...+...|..  .|+++.|+++|++     +++-+.|+++++
T Consensus       316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~-----LlSRg~D~tLKv  390 (641)
T KOG0772|consen  316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY-----LLSRGFDDTLKV  390 (641)
T ss_pred             cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccch-----hhhccCCCceee
Confidence             126899999999999999999999999997543  223333333333  7999999999998     899999999999


Q ss_pred             EeCCCcee-eeeeccc--CCCcEEEEECCCCCEEEEEeC------CCcEEEEecCCceeeeeeeccccCcceEEEEEeeC
Q 016257          229 YDISTWNK-IGHKRLL--RKPASVLSISLDGKYLAMGSK------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (392)
Q Consensus       229 ~d~~~~~~-~~~~~~~--~~~v~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  299 (392)
                      ||++..+. +....+.  ..+-+.++|||+.++|++|+.      .|++.+||..+.+.+..+. .. ...|..+.|+|.
T Consensus       391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~-i~-~aSvv~~~Whpk  468 (641)
T KOG0772|consen  391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID-IS-TASVVRCLWHPK  468 (641)
T ss_pred             eeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec-CC-CceEEEEeecch
Confidence            99997654 3333222  346678999999999999864      4789999999998888774 33 678999999999


Q ss_pred             CCeEEEEeCCCeEEEEE
Q 016257          300 QRVVLTASKEWGAMITK  316 (392)
Q Consensus       300 ~~~l~~~~~dg~i~iw~  316 (392)
                      -+.|++|+.||.++++-
T Consensus       469 LNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  469 LNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             hhheeeecCCCceEEEE
Confidence            88899999999999874

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=9.6e-31  Score=201.33  Aligned_cols=281  Identities=12%  Similarity=0.128  Sum_probs=233.1

Q ss_pred             EEEeeCCCCCeeEEEEcC---CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC
Q 016257           56 TYVFDESEGDPMTIAVNP---SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (392)
Q Consensus        56 ~~~~~~h~~~v~~~~~sp---~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  132 (392)
                      ..+..||+.+|..++|||   +|-+|++++.|+.-.+-+-+++..+..+..       |.+.|.+..++.+....++++.
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeg-------hkgavw~~~l~~na~~aasaaa   79 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEG-------HKGAVWSATLNKNATRAASAAA   79 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeec-------cCcceeeeecCchhhhhhhhcc
Confidence            355789999999999986   888999999999888777777776666553       7899999999999989999999


Q ss_pred             CCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee-eEEEecCCCcceEEEEecCCCCc
Q 016257          133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTK  211 (392)
Q Consensus       133 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~  211 (392)
                      |-+-++||.-+|..+..+ .|..-|..++|+.|.++|++|+.+.-++|||++..+. ...+..+ ...|+.+.|....+.
T Consensus        80 dftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~gh-tg~Ir~v~wc~eD~~  157 (334)
T KOG0278|consen   80 DFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGH-TGGIRTVLWCHEDKC  157 (334)
T ss_pred             cchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCC-CCcceeEEEeccCce
Confidence            999999999999887544 5666799999999999999999999999999987654 3444444 457999999988876


Q ss_pred             ceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcce
Q 016257          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI  291 (392)
Q Consensus       212 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i  291 (392)
                           ++++.+|+.|++||.++++.++.+.. ..+|+++.++++|++|.++. .+.|.+||.++..+++....   ...|
T Consensus       158 -----iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~---P~nV  227 (334)
T KOG0278|consen  158 -----ILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKM---PCNV  227 (334)
T ss_pred             -----EEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccC---cccc
Confidence                 78889999999999999999888765 67899999999999887765 56799999999988887643   5789


Q ss_pred             EEEEEeeCCCeEEEEeCCCeEEEEEeecCcccc---------ceeeeeeeeeeeeeceEEEEeeecceeeeecccccc
Q 016257          292 ALVEFCPTQRVVLTASKEWGAMITKLTVPADWK---------EWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVAR  360 (392)
Q Consensus       292 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~  360 (392)
                      .+.+.+|+...+++|+.|..++.||..++.+..         +..+.+++.+.     ..++++.||+||+|....++
T Consensus       228 ~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-----~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  228 ESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-----LYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             ccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-----eeeccCCCceEEEEEecCCC
Confidence            999999999999999999999999998775543         33444555444     55556679999999987554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=4.4e-29  Score=206.32  Aligned_cols=279  Identities=14%  Similarity=0.164  Sum_probs=224.3

Q ss_pred             eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 016257            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (392)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~   86 (392)
                      +.++.-+|..   ..+.+|+.      +....+++.+        ..+....++||...|+.+.|+|+...+++++.|..
T Consensus       222 i~ald~~~s~---~~ilTGG~------d~~av~~d~~--------s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~  284 (506)
T KOG0289|consen  222 ITALDIIPSS---SKILTGGE------DKTAVLFDKP--------SNQILATLKGHTKKITSVKFHKDLDTVITASADEI  284 (506)
T ss_pred             eeEEeecCCC---CcceecCC------CCceEEEecc--------hhhhhhhccCcceEEEEEEeccchhheeecCCcce
Confidence            4445555542   23555544      4445566655        45566789999999999999999999999999999


Q ss_pred             EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCC--CcEEEEEecC
Q 016257           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH--KSVLDMDFSL  164 (392)
Q Consensus        87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~~i~~~~  164 (392)
                      |+||.........       ....|.++|+.+..+|.|.||++++.|++....|++++..+.......  -.+++.+|+|
T Consensus       285 i~vws~~~~s~~~-------~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp  357 (506)
T KOG0289|consen  285 IRVWSVPLSSEPT-------SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP  357 (506)
T ss_pred             EEeeccccccCcc-------ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC
Confidence            9999987665322       222488999999999999999999999999999999998876554432  2689999999


Q ss_pred             CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC
Q 016257          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR  244 (392)
Q Consensus       165 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~  244 (392)
                      ||..|.+|..|+.+++||+.++.....|.+| .++|..++|+.+|-+     ++++.+|+.|++||+|..+....+....
T Consensus       358 DgLifgtgt~d~~vkiwdlks~~~~a~Fpgh-t~~vk~i~FsENGY~-----Lat~add~~V~lwDLRKl~n~kt~~l~~  431 (506)
T KOG0289|consen  358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGH-TGPVKAISFSENGYW-----LATAADDGSVKLWDLRKLKNFKTIQLDE  431 (506)
T ss_pred             CceEEeccCCCceEEEEEcCCccccccCCCC-CCceeEEEeccCceE-----EEEEecCCeEEEEEehhhcccceeeccc
Confidence            9999999999999999999999988888875 569999999999987     8999999999999999887766665433


Q ss_pred             -CCcEEEEECCCCCEEEEEeCCCcEEEEecCCc--eeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEe
Q 016257          245 -KPASVLSISLDGKYLAMGSKDGDICVVDVKKM--EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (392)
Q Consensus       245 -~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  317 (392)
                       ..+.++.|.+.|.+|+.++.|=.|++++-.+.  ..+..+ ..| .+..+++.|....+++++++.|..++++.+
T Consensus       432 ~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~-~~~-sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  432 KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL-ADH-SGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh-hhc-ccccceeeecccceEEeeccchhheEEeec
Confidence             47999999999999999987766666664433  334333 355 678999999999999999999988888764

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=3.3e-29  Score=229.11  Aligned_cols=293  Identities=18%  Similarity=0.241  Sum_probs=227.9

Q ss_pred             eCCCCCeeEEEEcCCCCeEEEEe--CCCeEEEEEEeCCccc----ee-eccccCCCCCCCCCeEEEEecCCCCEEEEEeC
Q 016257           60 DESEGDPMTIAVNPSGDDFVCST--TNGGCKLFEVYGGATD----IN-LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (392)
Q Consensus        60 ~~h~~~v~~~~~sp~~~~l~~~~--~d~~i~iw~~~~~~~~----~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  132 (392)
                      .+++..|.+++.+|||..+++|+  .|+.+.||+.+.-...    .. +.........|.+.|+|+.|+|||++||+|+.
T Consensus        10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD   89 (942)
T KOG0973|consen   10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD   89 (942)
T ss_pred             ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence            34456799999999999999999  8999999997542210    01 11111222358899999999999999999999


Q ss_pred             CCcEEEEeCCC------------------CceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec
Q 016257          133 DGHLRIMHWPS------------------LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR  194 (392)
Q Consensus       133 dg~i~i~d~~~------------------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  194 (392)
                      |+.|.||....                  .+.+..+.+|...|.++.|+|++.+|++++.|++|.+|+.++.+.+..+..
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~  169 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG  169 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence            99999998762                  124555677888999999999999999999999999999999988888887


Q ss_pred             CCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeeccc------CCCcEEEEECCCCCEEEEEeC----
Q 016257          195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL------RKPASVLSISLDGKYLAMGSK----  264 (392)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~----  264 (392)
                      |+. .|..+.|.|-|++     +++-++|++|++|++.+....+.+..+      ..-...+.|||||++|++...    
T Consensus       170 H~s-~VKGvs~DP~Gky-----~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~  243 (942)
T KOG0973|consen  170 HQS-LVKGVSWDPIGKY-----FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG  243 (942)
T ss_pred             ccc-cccceEECCccCe-----eeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence            765 7999999999998     899999999999998776655544432      234678999999999998642    


Q ss_pred             CCcEEEEecCCceeeeeeeccccCcceEEEEEeeC-----CC------------eEEEEeCCCeEEEEEeecCcccccee
Q 016257          265 DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT-----QR------------VVLTASKEWGAMITKLTVPADWKEWQ  327 (392)
Q Consensus       265 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~------------~l~~~~~dg~i~iw~~~~~~~~~~~~  327 (392)
                      -..+.|.+-.+.+.-..+ .+| ..++.+++|+|.     .+            .+|+|+.|++|.||....++++-+..
T Consensus       244 ~~~~~IieR~tWk~~~~L-vGH-~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~  321 (942)
T KOG0973|consen  244 KSTIAIIERGTWKVDKDL-VGH-SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH  321 (942)
T ss_pred             cceeEEEecCCceeeeee-ecC-CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh
Confidence            346889998887766655 589 889999999982     11            67899999999999998776654321


Q ss_pred             ----eeeeeeeeeeeceEEEEeeecceeeeecccccc
Q 016257          328 ----IYSLLLALFLASAVVFYIFFENSDSFWNFPVAR  360 (392)
Q Consensus       328 ----~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~  360 (392)
                          ............-.++.++.||+|.+..++..+
T Consensus       322 ~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  322 NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence                111222222234478888999999999987654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=2.7e-28  Score=189.65  Aligned_cols=238  Identities=15%  Similarity=0.210  Sum_probs=205.4

Q ss_pred             EEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcE
Q 016257           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (392)
Q Consensus        57 ~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  136 (392)
                      ..++||+.+++.+.++.+|.+|.+++.|.+..+|-..+++.+....       .|.+.|.++..+.+.+++++|+.|.++
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~-------GHtGavW~~Did~~s~~liTGSAD~t~   76 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD-------GHTGAVWCCDIDWDSKHLITGSADQTA   76 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec-------CCCceEEEEEecCCcceeeecccccee
Confidence            3478999999999999999999999999999999988887655544       388999999999999999999999999


Q ss_pred             EEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcC-----CCcEEEEECC-------CCeeeEEEecCCCcceEEEE
Q 016257          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-----DGSARIWKTE-------DGVAWTFLTRNSDEKIELCR  204 (392)
Q Consensus       137 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-----d~~i~vwd~~-------~~~~~~~~~~~~~~~v~~~~  204 (392)
                      ++||+++|+++.... ...+|..+.|+++|++++.+..     .+.|.++|++       ..++...+..+. ..++.+.
T Consensus        77 kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~-skit~a~  154 (327)
T KOG0643|consen   77 KLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD-SKITSAL  154 (327)
T ss_pred             EEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-cceeeee
Confidence            999999999986554 4468999999999998877654     3679999998       345566666554 5799999


Q ss_pred             ecCCCCcceEEEEEEeCCccEEEEEeCCCcee-eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee
Q 016257          205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (392)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  283 (392)
                      |.|-++.     +++|.++|.|..||.++++. +...+.|...|+.+++++|..++++++.|.+-++||..+.++++.+.
T Consensus       155 Wg~l~~~-----ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~  229 (327)
T KOG0643|consen  155 WGPLGET-----IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT  229 (327)
T ss_pred             ecccCCE-----EEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence            9999997     89999999999999999754 55567888999999999999999999999999999999999998875


Q ss_pred             ccccCcceEEEEEeeCCCeEEEEeCCCe
Q 016257          284 RLHLGTSIALVEFCPTQRVVLTASKEWG  311 (392)
Q Consensus       284 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~  311 (392)
                      .   ..+|++.+++|...+++.|+....
T Consensus       230 t---e~PvN~aaisP~~d~VilgGGqeA  254 (327)
T KOG0643|consen  230 T---ERPVNTAAISPLLDHVILGGGQEA  254 (327)
T ss_pred             e---cccccceecccccceEEecCCcee
Confidence            4   679999999998888877765533

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.1e-29  Score=223.62  Aligned_cols=249  Identities=14%  Similarity=0.183  Sum_probs=198.8

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCC------------------------------------CC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPK------------------------------------TT   47 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~------------------------------------~~   47 (392)
                      .|.|.++.|++|+   .++|+||.      |+.|+||.+-..                                    ..
T Consensus       267 ~gaIw~mKFS~DG---KyLAsaGe------D~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  267 KGAIWAMKFSHDG---KYLASAGE------DGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             CCcEEEEEeCCCC---ceeeecCC------CceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            5789999999999   45777666      788999998640                                    00


Q ss_pred             cc----------------ccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCC
Q 016257           48 SV----------------YTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (392)
Q Consensus        48 ~~----------------~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  111 (392)
                      ..                .-.+.....|.||.+.|..+.||.++ +|++++.|.+|++|++...+++..+        .|
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F--------~H  408 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF--------SH  408 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE--------ec
Confidence            00                00112233688999999999999764 8999999999999999987764443        58


Q ss_pred             CCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeE
Q 016257          112 AGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT  190 (392)
Q Consensus       112 ~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~  190 (392)
                      ...|+|++|+| |.+++++|+-||+||||++...+.+ ....-+.-|++++|.|||+..+.|+.+|.+++|+....+...
T Consensus       409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv-~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~  487 (712)
T KOG0283|consen  409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV-DWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS  487 (712)
T ss_pred             CCeeEEEEecccCCCcEeecccccceEEeecCcCeeE-eehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEE
Confidence            99999999999 8899999999999999999876654 344555789999999999999999999999999998877665


Q ss_pred             EEecC-------CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCC--CcEEEEECCCCCEEEE
Q 016257          191 FLTRN-------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK--PASVLSISLDGKYLAM  261 (392)
Q Consensus       191 ~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~  261 (392)
                      .+...       ....|+.+.|.|.....    +++.+.|..|+|||.+..+.+..+++...  .-....|+.||++|++
T Consensus       488 ~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~----vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs  563 (712)
T KOG0283|consen  488 DFHIRLHNKKKKQGKRITGLQFFPGDPDE----VLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVS  563 (712)
T ss_pred             eeeEeeccCccccCceeeeeEecCCCCCe----EEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEE
Confidence            54321       12269999999865542    67888899999999988888877776542  2345689999999999


Q ss_pred             EeCCCcEEEEecCC
Q 016257          262 GSKDGDICVVDVKK  275 (392)
Q Consensus       262 ~~~dg~i~iwd~~~  275 (392)
                      +++|..|++|++..
T Consensus       564 ~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  564 ASEDSWVYIWKNDS  577 (712)
T ss_pred             eecCceEEEEeCCC
Confidence            99999999999854

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=2.6e-28  Score=203.10  Aligned_cols=308  Identities=12%  Similarity=0.116  Sum_probs=223.1

Q ss_pred             CceeeeecCCCCCcce-------eEEEeCCCCCCCCCcCceeEEEEcCCCCc-------cc-----------cC-CceEE
Q 016257            4 GGTVTCGSWIKRPENV-------NLVVLGKSSRASSSPSVLEIFSFDPKTTS-------VY-----------TS-PLVTY   57 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~-------~~~~~g~~~~~~~~~~~i~i~~~~~~~~~-------~~-----------~~-~~~~~   57 (392)
                      ..|-..+.|-|+-...       .-+++|...- .+.+|.+.|-.+......       ..           .. .....
T Consensus        40 eWPSLt~qWlPd~~~~~~~~~~~~rliLGthTs-~~~~n~L~iA~v~lp~~~~~~~~~~~~~e~~e~~g~~~~~~~v~i~  118 (422)
T KOG0264|consen   40 EWPSLTVQWLPDVTKPEEKDFSKQRLILGTHTS-GSEQNYLVIASVQLPTDDAQFEDKHYDEERGEFGGFGAVSGKVEIS  118 (422)
T ss_pred             cccceEEEEcCCcccccCCCceeEEEEEEeecC-CCCccEEEEEeecCCCcccccccccccccccccCCccccccceEEE
Confidence            4577889999972221       1344444321 226788877764311110       00           00 11122


Q ss_pred             EeeCCCCCeeEEEEcCCCC-eEEEEeCCCeEEEEEEeCCccceeecc---ccCCCCCCCCCeEEEEecCC-CCEEEEEeC
Q 016257           58 VFDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLA---KKMPPLQDAGPQKCLSFSVD-GSRFAAGGV  132 (392)
Q Consensus        58 ~~~~h~~~v~~~~~sp~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~  132 (392)
                      ....|.+.|+.+.+.|+.. .+|+.+..+.++|||............   .......|...-.+++|++. .-.|++++.
T Consensus       119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~  198 (422)
T KOG0264|consen  119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD  198 (422)
T ss_pred             EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence            2345899999999999665 666778889999999976543332211   11122236666788999984 447899999


Q ss_pred             CCcEEEEeCCCCce-------eecccCCCCcEEEEEecC-CCCeEEEEcCCCcEEEEECCC--CeeeEEEecCCCcceEE
Q 016257          133 DGHLRIMHWPSLRI-------ILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTED--GVAWTFLTRNSDEKIEL  202 (392)
Q Consensus       133 dg~i~i~d~~~~~~-------~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~--~~~~~~~~~~~~~~v~~  202 (392)
                      |++|.+||+.....       ...+..|...|..++|++ +..++++++.|+.+.|||+|+  .++...... +...+.|
T Consensus       199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a-h~~~vn~  277 (422)
T KOG0264|consen  199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA-HSAEVNC  277 (422)
T ss_pred             CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc-cCCceeE
Confidence            99999999964322       334566777999999999 556789999999999999994  444444444 4558999


Q ss_pred             EEecCCCCcceEEEEEEeCCccEEEEEeCCCce-eeeeecccCCCcEEEEECCCC-CEEEEEeCCCcEEEEecCCcee--
Q 016257          203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEI--  278 (392)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~--  278 (392)
                      ++|+|-+..+    +++++.|++|.+||+|+.+ ++..+..|...|..+.|||+. ..||+++.|+.+.+||+..-..  
T Consensus       278 ~~fnp~~~~i----lAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq  353 (422)
T KOG0264|consen  278 VAFNPFNEFI----LATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ  353 (422)
T ss_pred             EEeCCCCCce----EEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence            9999998763    7999999999999999754 567888999999999999965 6789999999999999975221  


Q ss_pred             -----------eeeeeccccCcceEEEEEeeCCC-eEEEEeCCCeEEEEEee
Q 016257          279 -----------NHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLT  318 (392)
Q Consensus       279 -----------~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~  318 (392)
                                 +..+..+| ...|..+.|+|+.. .|++.+.|+.+.||++.
T Consensus       354 ~~eda~dgppEllF~HgGH-~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  354 SPEDAEDGPPELLFIHGGH-TAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ChhhhccCCcceeEEecCc-ccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                       12445788 89999999999887 57788999999999987

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=7.4e-29  Score=197.50  Aligned_cols=274  Identities=12%  Similarity=0.192  Sum_probs=224.0

Q ss_pred             CCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEE------eCCccc------
Q 016257           31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEV------YGGATD------   98 (392)
Q Consensus        31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~------~~~~~~------   98 (392)
                      +..|.+-+||.++        ...+..++.||.+.|++++|++.+.++++++.|++..||..      ......      
T Consensus       166 ASADhTA~iWs~E--------sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsE  237 (481)
T KOG0300|consen  166 ASADHTARIWSLE--------SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSE  237 (481)
T ss_pred             cccccceeEEeec--------cccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCch
Confidence            3457888999998        66777889999999999999999999999999999999982      221000      


Q ss_pred             ---------------------eeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcE
Q 016257           99 ---------------------INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV  157 (392)
Q Consensus        99 ---------------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i  157 (392)
                                           ..+.........|.+.|.+..|-..|+.+++++-|.+..+||+++++.+..+.+|....
T Consensus       238 eE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~EL  317 (481)
T KOG0300|consen  238 EEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSEL  317 (481)
T ss_pred             hhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhc
Confidence                                 00000011122367788899999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCeEEEEcCCCcEEEEECCCCe-eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee
Q 016257          158 LDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (392)
Q Consensus       158 ~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~  236 (392)
                      +.++-+|..+++++++.|.+.++||.+..- .+..|++|. ..|+++.|..+.+      ++++++|.+|++||+++...
T Consensus       318 tHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt-dtVTS~vF~~dd~------vVSgSDDrTvKvWdLrNMRs  390 (481)
T KOG0300|consen  318 THCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT-DTVTSVVFNTDDR------VVSGSDDRTVKVWDLRNMRS  390 (481)
T ss_pred             cccccCCcceEEEEeccCceeEeccchhhcceeeeecccc-cceeEEEEecCCc------eeecCCCceEEEeeeccccC
Confidence            999999999999999999999999998543 345566655 4799999999988      79999999999999997654


Q ss_pred             -eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeee---eeeccccCcceEEEEEeeCCC--eEEEEeCCC
Q 016257          237 -IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH---WSKRLHLGTSIALVEFCPTQR--VVLTASKEW  310 (392)
Q Consensus       237 -~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg  310 (392)
                       +..++ ...+++.++.+..+..++.--.+..|++||+....+.+   ...++| ...|+|++|..+-.  -|++++.|.
T Consensus       391 plATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgH-rRMV~c~AW~eehp~cnLftcGFDR  468 (481)
T KOG0300|consen  391 PLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGH-RRMVTCCAWLEEHPACNLFTCGFDR  468 (481)
T ss_pred             cceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccc-ceeeeeeeccccCcccccccccccc
Confidence             34443 46789999999998999999989999999998766443   334688 88999999987644  588999999


Q ss_pred             eEEEEEeecCc
Q 016257          311 GAMITKLTVPA  321 (392)
Q Consensus       311 ~i~iw~~~~~~  321 (392)
                      .+.-|+++.+.
T Consensus       469 ~v~gW~in~p~  479 (481)
T KOG0300|consen  469 MVAGWKINTPT  479 (481)
T ss_pred             eeeeeEecccC
Confidence            99999998764

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3e-28  Score=202.95  Aligned_cols=290  Identities=17%  Similarity=0.187  Sum_probs=229.7

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC-eEEEEe
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCST   82 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~~~~   82 (392)
                      .++|+|++|+|..+  .+++       +|-++.+++|.+|......    +  +.+.-...+|.+..|.|+|. .+++++
T Consensus       213 ~~~I~sv~FHp~~p--lllv-------aG~d~~lrifqvDGk~N~~----l--qS~~l~~fPi~~a~f~p~G~~~i~~s~  277 (514)
T KOG2055|consen  213 HGGITSVQFHPTAP--LLLV-------AGLDGTLRIFQVDGKVNPK----L--QSIHLEKFPIQKAEFAPNGHSVIFTSG  277 (514)
T ss_pred             cCCceEEEecCCCc--eEEE-------ecCCCcEEEEEecCccChh----h--eeeeeccCccceeeecCCCceEEEecc
Confidence            57899999999763  3444       4557889999999765432    2  22222367999999999999 888999


Q ss_pred             CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (392)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~  162 (392)
                      ....++.||+.+.+....-...   . .....+.....|+++++|+..+..|.|.+....+++.+..+ .-.+.|.+++|
T Consensus       278 rrky~ysyDle~ak~~k~~~~~---g-~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~-KieG~v~~~~f  352 (514)
T KOG2055|consen  278 RRKYLYSYDLETAKVTKLKPPY---G-VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF-KIEGVVSDFTF  352 (514)
T ss_pred             cceEEEEeeccccccccccCCC---C-cccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee-eeccEEeeEEE
Confidence            9999999999887642211110   0 11346788899999999999999999999999888776543 34568999999


Q ss_pred             cCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC------cee
Q 016257          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST------WNK  236 (392)
Q Consensus       163 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~------~~~  236 (392)
                      +.|++.|++++.+|.|.+||++..++++.+.....-.-++++.++++.+     +++|+..|.|.|||.++      .++
T Consensus       353 sSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y-----lA~GS~~GiVNIYd~~s~~~s~~PkP  427 (514)
T KOG2055|consen  353 SSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY-----LATGSDSGIVNIYDGNSCFASTNPKP  427 (514)
T ss_pred             ecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCce-----EEeccCcceEEEeccchhhccCCCCc
Confidence            9999999999999999999999999999998655444567888899997     89999999999999764      345


Q ss_pred             eeeecccCCCcEEEEECCCCCEEEEEeC--CCcEEEEecCCceeeeeeecc-ccCcceEEEEEeeCCCeEEEEeCCCeEE
Q 016257          237 IGHKRLLRKPASVLSISLDGKYLAMGSK--DGDICVVDVKKMEINHWSKRL-HLGTSIALVEFCPTQRVVLTASKEWGAM  313 (392)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~  313 (392)
                      +..+......|++++|+||.++||.++.  +..+++-.+.+......++.. ..-+.|+|++|+|.+.+|+.|..+|.+.
T Consensus       428 ik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~  507 (514)
T KOG2055|consen  428 IKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVH  507 (514)
T ss_pred             hhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCcee
Confidence            5666666778999999999999998874  577999998887665544321 1146799999999999999999999999


Q ss_pred             EEEee
Q 016257          314 ITKLT  318 (392)
Q Consensus       314 iw~~~  318 (392)
                      +|.+.
T Consensus       508 l~kL~  512 (514)
T KOG2055|consen  508 LFKLH  512 (514)
T ss_pred             eEeec
Confidence            99985

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.5e-27  Score=215.77  Aligned_cols=226  Identities=12%  Similarity=0.050  Sum_probs=172.5

Q ss_pred             EeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCc--------eeeccc
Q 016257           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLR--------IILDEP  151 (392)
Q Consensus        81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~  151 (392)
                      |+.++.+++|+.........+       ..|.+.|.+++|+|+ +++|++|+.|++|++||+.++.        ....+.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L-------~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~  122 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKL-------KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK  122 (568)
T ss_pred             CCceeEEEeeecCCCceEEEE-------cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee
Confidence            556788999987654322222       247889999999996 7899999999999999997642        222345


Q ss_pred             CCCCcEEEEEecCCCCe-EEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEe
Q 016257          152 KAHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (392)
Q Consensus       152 ~~~~~i~~i~~~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d  230 (392)
                      +|...|.+++|+|++.. |++++.|++|++||+++++....+..  ...|.+++|+|+|..     +++++.|+.|++||
T Consensus       123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~--~~~V~SlswspdG~l-----Lat~s~D~~IrIwD  195 (568)
T PTZ00420        123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM--PKKLSSLKWNIKGNL-----LSGTCVGKHMHIID  195 (568)
T ss_pred             cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec--CCcEEEEEECCCCCE-----EEEEecCCEEEEEE
Confidence            67779999999998875 57889999999999999887776652  347999999999996     67788999999999


Q ss_pred             CCCceeeeeecccCCCcEE-----EEECCCCCEEEEEeCCC----cEEEEecCC-ceeeeeeeccccCcceEEEEEeeCC
Q 016257          231 ISTWNKIGHKRLLRKPASV-----LSISLDGKYLAMGSKDG----DICVVDVKK-MEINHWSKRLHLGTSIALVEFCPTQ  300 (392)
Q Consensus       231 ~~~~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~  300 (392)
                      +++++.+..+..|.+.+..     ..|++++.+|++++.|+    .|+|||+++ .+.+.........+.+......++|
T Consensus       196 ~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg  275 (568)
T PTZ00420        196 PRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG  275 (568)
T ss_pred             CCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence            9999998888888776433     23568999999888764    699999995 4444433211102333333334568


Q ss_pred             CeEEEEeCCCeEEEEEeecC
Q 016257          301 RVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       301 ~~l~~~~~dg~i~iw~~~~~  320 (392)
                      .++++|+.|+.|++|++...
T Consensus       276 ~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        276 LIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             CEEEEEECCCeEEEEEccCC
Confidence            89999999999999999754

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=5.7e-30  Score=210.24  Aligned_cols=286  Identities=18%  Similarity=0.208  Sum_probs=224.8

Q ss_pred             eEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC
Q 016257           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (392)
Q Consensus        55 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (392)
                      ....+..|.+.+..+.|-++...|++|+.|..|++|++...+....-.     ..+..++|+.+.|.++++++++++.|+
T Consensus       167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~t-----LaGs~g~it~~d~d~~~~~~iAas~d~  241 (459)
T KOG0288|consen  167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELIST-----LAGSLGNITSIDFDSDNKHVIAASNDK  241 (459)
T ss_pred             hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhh-----hhccCCCcceeeecCCCceEEeecCCC
Confidence            344577899999999999998999999999999999997766211110     112357899999999999999999999


Q ss_pred             cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE
Q 016257          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (392)
Q Consensus       135 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (392)
                      .+++|++.+.+...++.+|.+.|+++.|......+++|+.|.+|++||+....+.+++....  .+..++.++  .    
T Consensus       242 ~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S--~cnDI~~~~--~----  313 (459)
T KOG0288|consen  242 NLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS--QCNDIVCSI--S----  313 (459)
T ss_pred             ceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc--cccceEecc--e----
Confidence            99999999999999999999999999998877779999999999999999988888776433  466666652  2    


Q ss_pred             EEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecc--ccCcceE
Q 016257          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL--HLGTSIA  292 (392)
Q Consensus       215 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~i~  292 (392)
                       .++++..|+.|+.||.++..+......+. .|+++..+++|..|.+++.|.++.+.|+++.+....+...  ......+
T Consensus       314 -~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwt  391 (459)
T KOG0288|consen  314 -DVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWT  391 (459)
T ss_pred             -eeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccc
Confidence             16888899999999999998887777654 9999999999999999999999999999998877665311  1134688


Q ss_pred             EEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeeee-----eeeeeeeeceEEEEeeecceeeeec
Q 016257          293 LVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYS-----LLLALFLASAVVFYIFFENSDSFWN  355 (392)
Q Consensus       293 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~d~~i~~W~  355 (392)
                      .+.|||++.|+++||.||.|+||++.+.+--++.....     ...........++++..+..+.+|.
T Consensus       392 rvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  392 RVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             eeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            99999999999999999999999998764332221111     1111112333444555566777773

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=3.5e-28  Score=192.14  Aligned_cols=249  Identities=16%  Similarity=0.213  Sum_probs=194.9

Q ss_pred             CCCeeEEEEcC-CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC
Q 016257           63 EGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (392)
Q Consensus        63 ~~~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~  141 (392)
                      .+.|.+++||| ...++++++.|++|++|+++.......     .....|.++|.+++|+.||..+++|+.|+.+++||+
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-----ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL  101 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-----KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL  101 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcccc-----hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence            57899999999 555677999999999999987532111     122347899999999999999999999999999999


Q ss_pred             CCCceeecccCCCCcEEEEEecCCCC--eEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEE
Q 016257          142 PSLRIILDEPKAHKSVLDMDFSLDSE--FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (392)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (392)
                      .+++. ..+..|..+|..+.|-+...  .|++|+.|.+|+.||.+...++.++..+.  .++++..-..    +   ++.
T Consensus       102 ~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe--RvYa~Dv~~p----m---~vV  171 (347)
T KOG0647|consen  102 ASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE--RVYAADVLYP----M---AVV  171 (347)
T ss_pred             cCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc--eeeehhccCc----e---eEE
Confidence            99955 46677888999999987554  89999999999999999999999887553  5666544322    1   567


Q ss_pred             eCCccEEEEEeCCCceeee--eecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCcee-eeeeecccc--------C
Q 016257          220 RGDKALLAVYDISTWNKIG--HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI-NHWSKRLHL--------G  288 (392)
Q Consensus       220 ~~~d~~i~v~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~--------~  288 (392)
                      +..++.|.+|+++.+....  ........++|++..+|....+.|+.+|++.|..+..+.. .....+.|.        -
T Consensus       172 ata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~V  251 (347)
T KOG0647|consen  172 ATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDV  251 (347)
T ss_pred             EecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCce
Confidence            7778899999997654321  1122355789999999988889999999999998887522 122224452        2


Q ss_pred             cceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccce
Q 016257          289 TSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEW  326 (392)
Q Consensus       289 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  326 (392)
                      ..|++++|+|.-..|++++.||++.+||-+....++..
T Consensus       252 YaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s  289 (347)
T KOG0647|consen  252 YAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS  289 (347)
T ss_pred             EEecceEeecccceEEEecCCceEEEecchhhhhhhcc
Confidence            36889999999999999999999999998877666543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.1e-28  Score=214.35  Aligned_cols=243  Identities=16%  Similarity=0.176  Sum_probs=206.1

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeC-CCCCeeEEEEcCCCCeEEEEe
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE-SEGDPMTIAVNPSGDDFVCST   82 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l~~~~   82 (392)
                      ...|+++.|++++.   .++.|..      ++.++||+..        .......+.+ |...|-+++|.  +..+.+|+
T Consensus       217 ~~~vtSv~ws~~G~---~LavG~~------~g~v~iwD~~--------~~k~~~~~~~~h~~rvg~laW~--~~~lssGs  277 (484)
T KOG0305|consen  217 EELVTSVKWSPDGS---HLAVGTS------DGTVQIWDVK--------EQKKTRTLRGSHASRVGSLAWN--SSVLSSGS  277 (484)
T ss_pred             CCceEEEEECCCCC---EEEEeec------CCeEEEEehh--------hccccccccCCcCceeEEEecc--CceEEEec
Confidence            56899999999995   4666555      5568899876        3333344556 99999999997  66899999


Q ss_pred             CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (392)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~  162 (392)
                      .++.|..+|+...+.....      ...|...|..++|++|+.++|+|+.|+.+.|||....+++..+..|...|..++|
T Consensus       278 r~~~I~~~dvR~~~~~~~~------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~aw  351 (484)
T KOG0305|consen  278 RDGKILNHDVRISQHVVST------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAW  351 (484)
T ss_pred             CCCcEEEEEEecchhhhhh------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeee
Confidence            9999999999887754441      2248889999999999999999999999999999888888889999999999999


Q ss_pred             cC-CCCeEEEEc--CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeee
Q 016257          163 SL-DSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (392)
Q Consensus       163 ~~-~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~  239 (392)
                      +| ....||+|+  .|+.|++||..+++.+..+...  ..|..+.|++..+.+.   ...|..++.|.||+..+.+.+..
T Consensus       352 cP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg--sQVcsL~Wsk~~kEi~---sthG~s~n~i~lw~~ps~~~~~~  426 (484)
T KOG0305|consen  352 CPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG--SQVCSLIWSKKYKELL---STHGYSENQITLWKYPSMKLVAE  426 (484)
T ss_pred             CCCccCceEEcCCCcccEEEEEEcCCCcEecccccC--CceeeEEEcCCCCEEE---EecCCCCCcEEEEeccccceeee
Confidence            99 566888865  7999999999999998887644  4799999999987621   34455678999999999999999


Q ss_pred             ecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 016257          240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (392)
Q Consensus       240 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  276 (392)
                      +.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus       427 l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  427 LLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            9999999999999999999999999999999998764

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=4e-28  Score=202.15  Aligned_cols=289  Identities=15%  Similarity=0.152  Sum_probs=219.3

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCc--cccC---------CceEEEeeCCCCCeeEEEEcC
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS--VYTS---------PLVTYVFDESEGDPMTIAVNP   73 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~--~~~~---------~~~~~~~~~h~~~v~~~~~sp   73 (392)
                      -++.||+.+|++.+   +..++.      ++.|.=|........  ....         +..... ++|...+.+++.++
T Consensus       143 ~s~~~vals~d~~~---~fsask------~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~  212 (479)
T KOG0299|consen  143 LSVTSVALSPDDKR---VFSASK------DGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAVSS  212 (479)
T ss_pred             CcceEEEeeccccc---eeecCC------CcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEEcC
Confidence            47899999999865   443333      344555544322211  1111         111111 48999999999999


Q ss_pred             CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCC
Q 016257           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (392)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  153 (392)
                      ||++||+|+.|..|.||+..+.+....+.       .|.+.|.+++|-...+.|++++.|+++++|+++....+.++.+|
T Consensus       213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~-------ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH  285 (479)
T KOG0299|consen  213 DGKYLATGGRDRHVQIWDCDTLEHVKVFK-------GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH  285 (479)
T ss_pred             CCcEEEecCCCceEEEecCcccchhhccc-------ccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC
Confidence            99999999999999999999987654432       37899999999988889999999999999999998888899999


Q ss_pred             CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (392)
Q Consensus       154 ~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~  233 (392)
                      ++.|.+|.-..-++.+-+|+.|+++++|++....  +.+...+.+.+.|++|-.+..      +++|+.+|.|.+|++.+
T Consensus       286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees--qlifrg~~~sidcv~~In~~H------fvsGSdnG~IaLWs~~K  357 (479)
T KOG0299|consen  286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGSIDCVAFINDEH------FVSGSDNGSIALWSLLK  357 (479)
T ss_pred             ccceeeechhcccceEEeccccceeEEEeccccc--eeeeeCCCCCeeeEEEecccc------eeeccCCceEEEeeecc
Confidence            9999999988888877788899999999994332  233333455799999998887      69999999999999998


Q ss_pred             ceeeeeecc-c-----------CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce-eeeeeeccccCcceEEEEEeeCC
Q 016257          234 WNKIGHKRL-L-----------RKPASVLSISLDGKYLAMGSKDGDICVVDVKKME-INHWSKRLHLGTSIALVEFCPTQ  300 (392)
Q Consensus       234 ~~~~~~~~~-~-----------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~  300 (392)
                      .+++..... |           +..|++++..|...++++|+.+|.|++|-+..+- .+..+......+.|++++|+++|
T Consensus       358 Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sg  437 (479)
T KOG0299|consen  358 KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSG  437 (479)
T ss_pred             cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCC
Confidence            887654431 1           1378999999999999999999999999998772 22222222237899999999999


Q ss_pred             CeEEEE-eCCCeEEEEEee
Q 016257          301 RVVLTA-SKEWGAMITKLT  318 (392)
Q Consensus       301 ~~l~~~-~~dg~i~iw~~~  318 (392)
                      +.|++| +....+--|-..
T Consensus       438 k~ivagiGkEhRlGRW~~~  456 (479)
T KOG0299|consen  438 KRIVAGIGKEHRLGRWWCL  456 (479)
T ss_pred             CEEEEecccccccceeeEe
Confidence            966555 445444444433

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2.1e-28  Score=203.83  Aligned_cols=256  Identities=16%  Similarity=0.155  Sum_probs=216.7

Q ss_pred             EEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccc---------cCCC--CCCCCCeEEEEecCCCC
Q 016257           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK---------KMPP--LQDAGPQKCLSFSVDGS  125 (392)
Q Consensus        57 ~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~---------~~~~--~~~~~~v~~~~~s~~~~  125 (392)
                      ..+..|.-+|.+++++|+..+.++++.+++|.-|++.+++....+...         ....  -.|...+.+++.|+||+
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            456789999999999999999999999999999999888743221111         1111  25778899999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEe
Q 016257          126 RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF  205 (392)
Q Consensus       126 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~  205 (392)
                      +|++|+.|..|.||+.++.+.+..+..|.+.|.+++|-.....+++++.|+++++|+++....+.++.+|+. .|..+.-
T Consensus       216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-~v~~Ida  294 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-GVLGIDA  294 (479)
T ss_pred             EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-ceeeech
Confidence            999999999999999999999988899999999999998888899999999999999999888888888766 6888888


Q ss_pred             cCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecc
Q 016257          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL  285 (392)
Q Consensus       206 ~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  285 (392)
                      ...++.     +.+++.|+++++|++... ....+.++.+.+.|++|-. ..++++|+.+|.|.+|++.+.+++......
T Consensus       295 L~reR~-----vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~A  367 (479)
T KOG0299|consen  295 LSRERC-----VTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLA  367 (479)
T ss_pred             hcccce-----EEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeecc
Confidence            777774     667779999999999643 3345677788999999964 468899999999999999999888776655


Q ss_pred             cc----------CcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257          286 HL----------GTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       286 ~~----------~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      |.          ...|++++..|...++++|+.+|.|++|.+..+
T Consensus       368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            52          127899999999999999999999999999865

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.6e-26  Score=175.74  Aligned_cols=288  Identities=15%  Similarity=0.196  Sum_probs=211.4

Q ss_pred             CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccc------eee--ccccCCCCCCCCCeEEEEecCCCCEEEEEeC
Q 016257           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD------INL--LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (392)
Q Consensus        61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~------~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  132 (392)
                      .....|.+++|+|.|.+.++|+...+++|-....-...      ...  .........|.+.|.|.+|+|+|++|++|+.
T Consensus        30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn  109 (350)
T KOG0641|consen   30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN  109 (350)
T ss_pred             cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence            34678999999999999999999999887654322111      000  0011122347899999999999999999999


Q ss_pred             CCcEEEEeCCCCce-----eecccCCCCcEEEEEecCC----CCeEEEEc-CCCcEEEEECCCCeeeEEEecCCCcceEE
Q 016257          133 DGHLRIMHWPSLRI-----ILDEPKAHKSVLDMDFSLD----SEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIEL  202 (392)
Q Consensus       133 dg~i~i~d~~~~~~-----~~~~~~~~~~i~~i~~~~~----~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~v~~  202 (392)
                      |.+|++..+....+     -.++.-|.+.|..++|-.+    +..|++++ .|..|++-|...++..+.+.+|.. .|.+
T Consensus       110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg-hila  188 (350)
T KOG0641|consen  110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG-HILA  188 (350)
T ss_pred             CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc-cEEE
Confidence            99999987654332     1244556778999999543    45677665 466788889989999988887765 4544


Q ss_pred             EEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc--c-----CCCcEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 016257          203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL--L-----RKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (392)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~--~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  275 (392)
                      + ++-++-.     +++++.|.+|+.||++-..++..+..  |     ...|.+++..|.|++|++|-.|....+||++.
T Consensus       189 l-yswn~~m-----~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg  262 (350)
T KOG0641|consen  189 L-YSWNGAM-----FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG  262 (350)
T ss_pred             E-EEecCcE-----EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence            4 2223333     78999999999999998877765532  1     35789999999999999999999999999999


Q ss_pred             ceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC--ccccceeee----eeeeeeee-eceEEEEeeec
Q 016257          276 MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP--ADWKEWQIY----SLLLALFL-ASAVVFYIFFE  348 (392)
Q Consensus       276 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~----~~~~~~~~-~~~~~~~~~~d  348 (392)
                      +..++.+ ..| ...|.++.|+|...++++++.|.+|++-|+...  ++++..-+.    ..+.+... ..-..++.+.|
T Consensus       263 ~r~iq~f-~ph-sadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssad  340 (350)
T KOG0641|consen  263 GRMIQRF-HPH-SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSAD  340 (350)
T ss_pred             Cceeeee-CCC-ccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCc
Confidence            9999887 478 899999999999999999999999999999743  222211110    11112222 12244555679


Q ss_pred             ceeeeeccc
Q 016257          349 NSDSFWNFP  357 (392)
Q Consensus       349 ~~i~~W~~~  357 (392)
                      .+..+|.++
T Consensus       341 kt~tlwa~~  349 (350)
T KOG0641|consen  341 KTATLWALN  349 (350)
T ss_pred             ceEEEeccC
Confidence            999999864

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1e-27  Score=189.62  Aligned_cols=274  Identities=12%  Similarity=0.117  Sum_probs=211.6

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .-.|.+++|+|...  .+++.|+-      |++|++|+++..+....      .....|.++|.+++|+.||..+++|+.
T Consensus        27 ~DsIS~l~FSP~~~--~~~~A~SW------D~tVR~wevq~~g~~~~------ka~~~~~~PvL~v~WsddgskVf~g~~   92 (347)
T KOG0647|consen   27 EDSISALAFSPQAD--NLLAAGSW------DGTVRIWEVQNSGQLVP------KAQQSHDGPVLDVCWSDDGSKVFSGGC   92 (347)
T ss_pred             ccchheeEeccccC--ceEEeccc------CCceEEEEEecCCcccc------hhhhccCCCeEEEEEccCCceEEeecc
Confidence            45689999999443  35654444      88999999986532221      335568999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCC--EEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEE
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS--RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~  161 (392)
                      |+.+++||+.+++.. .+       -.|.++|..+.|-+...  .|++|+-|.+|+.||++...++.++. -.+.++++.
T Consensus        93 Dk~~k~wDL~S~Q~~-~v-------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~D  163 (347)
T KOG0647|consen   93 DKQAKLWDLASGQVS-QV-------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAAD  163 (347)
T ss_pred             CCceEEEEccCCCee-ee-------eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehh
Confidence            999999999998632 22       13889999999988655  89999999999999999887775543 345677766


Q ss_pred             ecCCCCeEEEEcCCCcEEEEECCCCee-eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee--ee
Q 016257          162 FSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IG  238 (392)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~--~~  238 (392)
                      .-  ..+++++..++.|.+|+++++.. .+....+..-.+++++..++...     .+.|+-.|.+.+..+..+.+  -.
T Consensus       164 v~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~-----~alGsiEGrv~iq~id~~~~~~nF  236 (347)
T KOG0647|consen  164 VL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG-----FALGSIEGRVAIQYIDDPNPKDNF  236 (347)
T ss_pred             cc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc-----eEeeeecceEEEEecCCCCccCce
Confidence            54  45788888899999999976533 23333444557899999999886     58899999999998887532  22


Q ss_pred             eecccC---------CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEE-eC
Q 016257          239 HKRLLR---------KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA-SK  308 (392)
Q Consensus       239 ~~~~~~---------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~  308 (392)
                      .++.|.         ..|++++|+|.-..|++.+.||++.+||-+....+... ..| ..+|++.+|+.+|.+++.+ +.
T Consensus       237 tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s-~~~-~qpItcc~fn~~G~ifaYA~gY  314 (347)
T KOG0647|consen  237 TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS-ETH-PQPITCCSFNRNGSIFAYALGY  314 (347)
T ss_pred             eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc-CcC-CCccceeEecCCCCEEEEEeec
Confidence            333333         35788999999999999999999999998877766654 456 8999999999999987755 44


Q ss_pred             C
Q 016257          309 E  309 (392)
Q Consensus       309 d  309 (392)
                      |
T Consensus       315 D  315 (347)
T KOG0647|consen  315 D  315 (347)
T ss_pred             c
Confidence            4

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=8.1e-28  Score=209.76  Aligned_cols=283  Identities=13%  Similarity=0.091  Sum_probs=225.9

Q ss_pred             ceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEE-EEecC-CCCEEEEEe
Q 016257           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC-LSFSV-DGSRFAAGG  131 (392)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~-~~~~l~~~~  131 (392)
                      .+.+.+.+|...|..+++.+. ..++++++||++++|+-...+......     ...|.+-|.. ++|-+ ++-.+++|+
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~-----~~~~~g~i~~~i~y~e~~~~~l~~g~   78 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHA-----FEGPKGFIANSICYAESDKGRLVVGG   78 (745)
T ss_pred             eeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCccccccee-----cccCcceeeccceeccccCcceEeec
Confidence            456789999999999998754 489999999999999987665433211     1124555555 77765 555799999


Q ss_pred             CCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCc
Q 016257          132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (392)
Q Consensus       132 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (392)
                      .|..+.+|...+..+...+.+|...|.+++...++. +++||.|.++++|...  ++...+.+| ...|.+++.-|++. 
T Consensus        79 ~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH-~asVWAv~~l~e~~-  153 (745)
T KOG0301|consen   79 MDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGH-TASVWAVASLPENT-  153 (745)
T ss_pred             ccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCc-chheeeeeecCCCc-
Confidence            999999999999999999999999999999887777 9999999999999764  444556655 55899999999996 


Q ss_pred             ceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcce
Q 016257          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI  291 (392)
Q Consensus       212 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i  291 (392)
                           +++|+.|..|++|.-  ++.++.+.+|...|+.+++-+++ .|++++.||.|++|++ +++.+... .+| ..-|
T Consensus       154 -----~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~-~gh-tn~v  222 (745)
T KOG0301|consen  154 -----YVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEM-HGH-TNFV  222 (745)
T ss_pred             -----EEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeee-ecc-ceEE
Confidence                 699999999999986  56788899999999999998775 5678889999999999 66666655 588 9999


Q ss_pred             EEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeeeeeeeeeeeeceEEEEeeecceeeeecccc
Q 016257          292 ALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPV  358 (392)
Q Consensus       292 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~  358 (392)
                      .+++..+++..++++++|++++||+.......-.......-.+..+..+.+++++.||.||+|....
T Consensus       223 Ysis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  223 YSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             EEEEecCCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence            9999888889999999999999999873221111111122334455677888999999999998873

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=2.6e-28  Score=205.46  Aligned_cols=284  Identities=13%  Similarity=0.119  Sum_probs=228.9

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCC
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~   85 (392)
                      -|..+..+....   .|.+|+.       +.|+||++...+...   +..........+-|.++..+|||+.|++|+.-.
T Consensus       421 vVcAvtIS~~tr---hVyTgGk-------gcVKVWdis~pg~k~---PvsqLdcl~rdnyiRSckL~pdgrtLivGGeas  487 (705)
T KOG0639|consen  421 VVCAVTISNPTR---HVYTGGK-------GCVKVWDISQPGNKS---PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAS  487 (705)
T ss_pred             EEEEEEecCCcc---eeEecCC-------CeEEEeeccCCCCCC---ccccccccCcccceeeeEecCCCceEEeccccc
Confidence            344455555542   3554444       339999997654332   222222233467899999999999999999999


Q ss_pred             eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCC
Q 016257           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD  165 (392)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~  165 (392)
                      ++.|||+.......+.....     ..-.+.+++.+||.+..+++..||.|.|||+.+...+..+.+|.+.+.||..++|
T Consensus       488 tlsiWDLAapTprikaelts-----sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~d  562 (705)
T KOG0639|consen  488 TLSIWDLAAPTPRIKAELTS-----SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKD  562 (705)
T ss_pred             eeeeeeccCCCcchhhhcCC-----cchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCC
Confidence            99999998765332221111     2246788999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCC
Q 016257          166 SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK  245 (392)
Q Consensus       166 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~  245 (392)
                      |..|-+|+-|.+|+.||+++++.+....  ....|.++-.+|.+.+     ++.|-+++.+.|......+ ...+..|..
T Consensus       563 GtklWTGGlDntvRcWDlregrqlqqhd--F~SQIfSLg~cP~~dW-----lavGMens~vevlh~skp~-kyqlhlheS  634 (705)
T KOG0639|consen  563 GTKLWTGGLDNTVRCWDLREGRQLQQHD--FSSQIFSLGYCPTGDW-----LAVGMENSNVEVLHTSKPE-KYQLHLHES  634 (705)
T ss_pred             CceeecCCCccceeehhhhhhhhhhhhh--hhhhheecccCCCccc-----eeeecccCcEEEEecCCcc-ceeeccccc
Confidence            9999999999999999999988776544  3447999999999998     7888889989888876543 346677889


Q ss_pred             CcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          246 PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       246 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      -|.++.|.+.|+++++.+.|+.+..|...-|..+.....   .+.|.++.+|.|.++|++|+.|....+|.+.
T Consensus       635 cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkATVYeV~  704 (705)
T KOG0639|consen  635 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKATVYEVI  704 (705)
T ss_pred             EEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceEEEEEe
Confidence            999999999999999999999999999988877665433   7899999999999999999999999998763

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=2.2e-28  Score=205.87  Aligned_cols=283  Identities=13%  Similarity=0.165  Sum_probs=224.7

Q ss_pred             CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEe
Q 016257           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (392)
Q Consensus        61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d  140 (392)
                      .|.+-|.++.+|...+.++||+..+ |+|||+.....  +.....+..+.....++++.+.|||+.|++|++-.++.|||
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGkgc-VKVWdis~pg~--k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD  493 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISQPGN--KSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD  493 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCCCe-EEEeeccCCCC--CCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence            4888899999999999999988776 99999976532  22222344444567899999999999999999999999999


Q ss_pred             CCCCceeec--ccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257          141 WPSLRIILD--EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       141 ~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (392)
                      +........  +......++.++.+||.+..+++..||.|.|||+.+...++.+++|.+ .+.|+..+++|..     +.
T Consensus       494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD-GascIdis~dGtk-----lW  567 (705)
T KOG0639|consen  494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISKDGTK-----LW  567 (705)
T ss_pred             ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC-CceeEEecCCCce-----ee
Confidence            976654332  223334688999999999999999999999999999999999998876 5999999999998     89


Q ss_pred             EeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEee
Q 016257          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (392)
Q Consensus       219 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  298 (392)
                      +|+-|++++.||++.++.+.... ....|.++..+|++.+|++|-+++.+.+......+....  ..| ++.|.++.|.+
T Consensus       568 TGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyql--hlh-eScVLSlKFa~  643 (705)
T KOG0639|consen  568 TGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQL--HLH-ESCVLSLKFAY  643 (705)
T ss_pred             cCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccceee--ccc-ccEEEEEEecc
Confidence            99999999999999988765443 356899999999999999999999999988766555443  467 89999999999


Q ss_pred             CCCeEEEEeCCCeEEEEEeecCccccceeeeeeeeee--eeeceEEEEeeecceeeeecc
Q 016257          299 TQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLAL--FLASAVVFYIFFENSDSFWNF  356 (392)
Q Consensus       299 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~W~~  356 (392)
                      .|+++++.+.|+.+-.|....+..........+...+  ......+++++.|..-.++.+
T Consensus       644 cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  644 CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            9999999999999999998866553222222222221  224446666777766666543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=6.8e-28  Score=200.60  Aligned_cols=259  Identities=13%  Similarity=0.155  Sum_probs=199.6

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCcccc--CCceEEEeeCCCCCeeEEEEcCCCC-eEEE
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT--SPLVTYVFDESEGDPMTIAVNPSGD-DFVC   80 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~sp~~~-~l~~   80 (392)
                      .+.|..+...|.+..  ++++++.      .+.+.||++.........  .......|.+|++.-++++|++... .|++
T Consensus       124 ~gEVnRaRymPQnp~--iVAt~t~------~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls  195 (422)
T KOG0264|consen  124 DGEVNRARYMPQNPN--IVATKTS------SGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS  195 (422)
T ss_pred             CccchhhhhCCCCCc--EEEecCC------CCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee
Confidence            467778888887654  6665544      455888888644332221  2344557899999899999999554 7899


Q ss_pred             EeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCC--CCceeecccCCCCcE
Q 016257           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWP--SLRIILDEPKAHKSV  157 (392)
Q Consensus        81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~i  157 (392)
                      ++.|++|.+||+................-.|...|..++|++ +..+|++++.|+.+.|||++  +.+.......|...|
T Consensus       196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v  275 (422)
T KOG0264|consen  196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV  275 (422)
T ss_pred             ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence            999999999999776543222222223335889999999999 66788999999999999999  455555667778899


Q ss_pred             EEEEecC-CCCeEEEEcCCCcEEEEECCCCe-eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce
Q 016257          158 LDMDFSL-DSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (392)
Q Consensus       158 ~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~  235 (392)
                      .+++|+| ++..||+|+.|++|++||+|+.+ ++.++..| ...|.++.|+|....+    +++++.|+.+.+||+..-.
T Consensus       276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H-~dev~~V~WSPh~etv----LASSg~D~rl~vWDls~ig  350 (422)
T KOG0264|consen  276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH-EDEVFQVEWSPHNETV----LASSGTDRRLNVWDLSRIG  350 (422)
T ss_pred             eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC-CcceEEEEeCCCCCce----eEecccCCcEEEEeccccc
Confidence            9999999 55678999999999999999754 55666655 4579999999998863    7899999999999997522


Q ss_pred             --------------eeeeecccCCCcEEEEECCCCCE-EEEEeCCCcEEEEecCC
Q 016257          236 --------------KIGHKRLLRKPASVLSISLDGKY-LAMGSKDGDICVVDVKK  275 (392)
Q Consensus       236 --------------~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~  275 (392)
                                    .+....+|...|..+.|+|+..+ +++.++|+.+.||.+..
T Consensus       351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence                          23455678889999999998765 67788999999999864

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=6.3e-27  Score=185.73  Aligned_cols=268  Identities=15%  Similarity=0.143  Sum_probs=207.6

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .-.|.++.|+|...+  |++       +.-|+.+++|+++..        .+...++ |..++.+++|.+ ...+++|+.
T Consensus        13 ~d~IS~v~f~~~~~~--LLv-------ssWDgslrlYdv~~~--------~l~~~~~-~~~plL~c~F~d-~~~~~~G~~   73 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSD--LLV-------SSWDGSLRLYDVPAN--------SLKLKFK-HGAPLLDCAFAD-ESTIVTGGL   73 (323)
T ss_pred             hhceeeEEEcCcCCc--EEE-------EeccCcEEEEeccch--------hhhhhee-cCCceeeeeccC-CceEEEecc
Confidence            345899999987654  455       446888999998743        2223333 789999999987 457899999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      ||.|+.+|+.+++..        ....|..++.++.+++....+++|+-|++|++||.+.......+ ...+.|.++...
T Consensus        74 dg~vr~~Dln~~~~~--------~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~-d~~kkVy~~~v~  144 (323)
T KOG1036|consen   74 DGQVRRYDLNTGNED--------QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF-DQGKKVYCMDVS  144 (323)
T ss_pred             CceEEEEEecCCcce--------eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc-ccCceEEEEecc
Confidence            999999999988632        22248899999999998889999999999999999874443333 333478888776


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeeeEE-EecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc----eeee
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGVAWTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----NKIG  238 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~  238 (392)
                        ++.|++|+.|..+.+||+++.....+ .....+-.++++++-|++..     .+.++-+|.|.+=.++..    +...
T Consensus       145 --g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG-----y~~sSieGRVavE~~d~s~~~~skky  217 (323)
T KOG1036|consen  145 --GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG-----YVVSSIEGRVAVEYFDDSEEAQSKKY  217 (323)
T ss_pred             --CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc-----eEEEeecceEEEEccCCchHHhhhce
Confidence              77899999999999999997654332 22334457899999998776     688889999988766654    2223


Q ss_pred             eecccC---------CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeC
Q 016257          239 HKRLLR---------KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK  308 (392)
Q Consensus       239 ~~~~~~---------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  308 (392)
                      .++.|.         .+|++++|+|--..||||+.||.|.+||+.+.+.+..+.. . ...|.+++|+.+|..||.++.
T Consensus       218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~-~-~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK-Y-ETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC-C-CCceEEEEeccCCCeEEEEec
Confidence            333332         4799999999999999999999999999999988877643 3 567999999999999999874

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=7.9e-28  Score=184.71  Aligned_cols=260  Identities=13%  Similarity=0.129  Sum_probs=199.3

Q ss_pred             eeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEeCCCcE
Q 016257           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHL  136 (392)
Q Consensus        59 ~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i  136 (392)
                      -..|.+.|..+...--|+.|||++.|++|+|+..++......+.    ....|.++|..++|..  -|..|++++.||.|
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~----~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV   82 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLA----ELTGHSGPVWKVAWAHPKFGTILASCSYDGKV   82 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeee----EecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence            35688999988888889999999999999999998776422111    1224899999999976  89999999999999


Q ss_pred             EEEeCCCCce--eecccCCCCcEEEEEecCC--CCeEEEEcCCCcEEEEECCCC--eeeEEEecCCCcceEEEEecCC--
Q 016257          137 RIMHWPSLRI--ILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKD--  208 (392)
Q Consensus       137 ~i~d~~~~~~--~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~--  208 (392)
                      .||.-++++-  ......|...|++++|-|.  |-.|++++.||.|.|.+.+..  -....+...|.-.|+++.|.|.  
T Consensus        83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~  162 (299)
T KOG1332|consen   83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA  162 (299)
T ss_pred             EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence            9999877743  3344566679999999884  567999999999999998754  2223333334456999999986  


Q ss_pred             -CCc------ceEEEEEEeCCccEEEEEeCCCce--eeeeecccCCCcEEEEECCCC----CEEEEEeCCCcEEEEecCC
Q 016257          209 -GTK------PFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDG----KYLAMGSKDGDICVVDVKK  275 (392)
Q Consensus       209 -~~~------~~~~~~~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~iwd~~~  275 (392)
                       |..      .-..-+++++.|+.|+||+...++  .-..+..|...|+.++|.|.-    .+||++++||++.||-.+.
T Consensus       163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~  242 (299)
T KOG1332|consen  163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE  242 (299)
T ss_pred             CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence             310      001116999999999999998753  334578899999999999963    6799999999999997663


Q ss_pred             c--eeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccc
Q 016257          276 M--EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADW  323 (392)
Q Consensus       276 ~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  323 (392)
                      .  +-...+.... ...++.++||..|..|+.++.|+.+.+|.-+...++
T Consensus       243 e~e~wk~tll~~f-~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw  291 (299)
T KOG1332|consen  243 EYEPWKKTLLEEF-PDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKW  291 (299)
T ss_pred             ccCcccccccccC-CcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcE
Confidence            2  1111222223 678999999999999999999999999987765443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=7.1e-26  Score=201.58  Aligned_cols=316  Identities=21%  Similarity=0.221  Sum_probs=240.1

Q ss_pred             eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 016257            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (392)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~   86 (392)
                      |+++ .+|. .+++-++.|..+      +.+++|++.        .....++++++...|+++.=+|--+.+|.|..+|+
T Consensus       162 Ital-~HP~-TYLNKIvvGs~~------G~lql~Nvr--------t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~  225 (910)
T KOG1539|consen  162 ITAL-LHPS-TYLNKIVVGSSQ------GRLQLWNVR--------TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGT  225 (910)
T ss_pred             eeeE-ecch-hheeeEEEeecC------CcEEEEEec--------cCcEEEEecccccceeEeccCCcceEEEEeccCce
Confidence            5554 3553 567777777774      459999998        67788899999999999999998889999999999


Q ss_pred             EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCE-EEEEeCCCcEEEEeCCCCceeecccCCC-CcEEEEEecC
Q 016257           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDFSL  164 (392)
Q Consensus        87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~  164 (392)
                      |.+++++.++....+..       ..+.|++++|.-||+. +++|+..|.+.+||++..+.+......| +.|....|.|
T Consensus       226 ViifNlK~dkil~sFk~-------d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~  298 (910)
T KOG1539|consen  226 VIIFNLKFDKILMSFKQ-------DWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP  298 (910)
T ss_pred             EEEEEcccCcEEEEEEc-------cccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC
Confidence            99999999987666542       2489999999999985 5666667999999999887776666444 6777788887


Q ss_pred             CCCeEEEEcCCCcEEEEECCC--Cee------------------------------------------------------
Q 016257          165 DSEFLATTSTDGSARIWKTED--GVA------------------------------------------------------  188 (392)
Q Consensus       165 ~~~~l~~~~~d~~i~vwd~~~--~~~------------------------------------------------------  188 (392)
                      ....+++++.|..+++|=.++  +.+                                                      
T Consensus       299 ~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~  378 (910)
T KOG1539|consen  299 GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHN  378 (910)
T ss_pred             CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccc
Confidence            777788887777766653221  100                                                      


Q ss_pred             ---------------------------------------------eEE------------EecC----CCcceEEEEecC
Q 016257          189 ---------------------------------------------WTF------------LTRN----SDEKIELCRFSK  207 (392)
Q Consensus       189 ---------------------------------------------~~~------------~~~~----~~~~v~~~~~~~  207 (392)
                                                                   ..+            +...    ....+++++.++
T Consensus       379 ~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~  458 (910)
T KOG1539|consen  379 KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF  458 (910)
T ss_pred             ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence                                                         000            0000    112456677777


Q ss_pred             CCCcceEEEEEEeCCccEEEEEeCCCceeeeee---cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee--
Q 016257          208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS--  282 (392)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--  282 (392)
                      .|+.     .+.|...|.|.+|++.++-....+   ..|+.+|+.++...-++.+++++.+|.+++||.++..+....  
T Consensus       459 CGNF-----~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l  533 (910)
T KOG1539|consen  459 CGNF-----VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL  533 (910)
T ss_pred             cCce-----EEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc
Confidence            7775     677888999999999999877777   578999999999988999999999999999998876432221  


Q ss_pred             --------------------------------------eccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccc
Q 016257          283 --------------------------------------KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWK  324 (392)
Q Consensus       283 --------------------------------------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  324 (392)
                                                            ..+| ...|++++|||||++|++++.|++|++||+.+..-..
T Consensus       534 ~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh-~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID  612 (910)
T KOG1539|consen  534 GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH-GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID  612 (910)
T ss_pred             CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc-ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee
Confidence                                                  2467 8899999999999999999999999999998775433


Q ss_pred             -------ceeeeeeeeeeeeeceEEEEeeec-ceeeeecc
Q 016257          325 -------EWQIYSLLLALFLASAVVFYIFFE-NSDSFWNF  356 (392)
Q Consensus       325 -------~~~~~~~~~~~~~~~~~~~~~~~d-~~i~~W~~  356 (392)
                             ...+.+++.+.+++...+     | ..|++|.-
T Consensus       613 ~~~vd~~~~sls~SPngD~LAT~Hv-----d~~gIylWsN  647 (910)
T KOG1539|consen  613 GLLVDSPCTSLSFSPNGDFLATVHV-----DQNGIYLWSN  647 (910)
T ss_pred             eEecCCcceeeEECCCCCEEEEEEe-----cCceEEEEEc
Confidence                   334556666665555444     6 67999964

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=6.8e-26  Score=197.39  Aligned_cols=323  Identities=12%  Similarity=0.173  Sum_probs=247.1

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCC-CCeeEEEEcCCCCeEEEEe
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVCST   82 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~l~~~~   82 (392)
                      ..+|.|+|++.....   +|.|.      .++.|++|++..       ...+...+.++. ..|.+++|++ +..|.+.+
T Consensus        25 Ps~I~slA~s~kS~~---lAvsR------t~g~IEiwN~~~-------~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g   87 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQ---LAVSR------TDGNIEIWNLSN-------NWFLEPVIHGPEDRSIESLAWAE-GGRLFSSG   87 (691)
T ss_pred             ccceEEEEEeccCCc---eeeec------cCCcEEEEccCC-------CceeeEEEecCCCCceeeEEEcc-CCeEEeec
Confidence            467999999998754   55444      477799999874       345555666654 5899999995 45778888


Q ss_pred             CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeec--ccCCCCcEEEE
Q 016257           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD--EPKAHKSVLDM  160 (392)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~i~~i  160 (392)
                      .+|.|.-||+.+.+.......       ..+.|.+++.+|.+..++.|+.||.+..++...++....  +....+.|.++
T Consensus        88 ~sg~i~EwDl~~lk~~~~~d~-------~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsl  160 (691)
T KOG2048|consen   88 LSGSITEWDLHTLKQKYNIDS-------NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSL  160 (691)
T ss_pred             CCceEEEEecccCceeEEecC-------CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEE
Confidence            999999999999886555433       357999999999999999999999888888877765433  33345689999


Q ss_pred             EecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe-------cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT-------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (392)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~  233 (392)
                      +|+|++..+++|+.||.|++||...+..+....       .....-|.++.|-.++.      ++++...|+|.+||...
T Consensus       161 sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t------I~sgDS~G~V~FWd~~~  234 (691)
T KOG2048|consen  161 SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST------IASGDSAGTVTFWDSIF  234 (691)
T ss_pred             EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc------EEEecCCceEEEEcccC
Confidence            999999999999999999999999887766221       11233578888888887      79999999999999999


Q ss_pred             ceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCcee---eeeeeccccCcceEEEEEeeCCCeEEEEeCCC
Q 016257          234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI---NHWSKRLHLGTSIALVEFCPTQRVVLTASKEW  310 (392)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  310 (392)
                      +..++.+..|...|.+++..+++..+++++.|+.|.-|...+.+.   .......| ...|.+++..++  .+++|+.|.
T Consensus       235 gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h-~hdvrs~av~~~--~l~sgG~d~  311 (691)
T KOG2048|consen  235 GTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLH-AHDVRSMAVIEN--ALISGGRDF  311 (691)
T ss_pred             cchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCC-cccceeeeeecc--eEEecceee
Confidence            999999999999999999999999999999999999998877643   23333566 889999999877  899999999


Q ss_pred             eEEEEEeecCcccc-cee--eeeeeeeeeeeceEEEEeeecceeeeeccccc
Q 016257          311 GAMITKLTVPADWK-EWQ--IYSLLLALFLASAVVFYIFFENSDSFWNFPVA  359 (392)
Q Consensus       311 ~i~iw~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~  359 (392)
                      .+.+-....-.... ...  ..............++..-.++.+.+|.+..+
T Consensus       312 ~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~  363 (691)
T KOG2048|consen  312 TLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSV  363 (691)
T ss_pred             EEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCc
Confidence            99887665311110 011  11111111223344545556888999998877

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.8e-27  Score=195.45  Aligned_cols=203  Identities=37%  Similarity=0.577  Sum_probs=173.5

Q ss_pred             eEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe-
Q 016257          115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT-  193 (392)
Q Consensus       115 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-  193 (392)
                      -..++|+.+|..+++|+.||++|+|++.+...+.....|+..|.+++|+|||++|++.+.| ..+||+.+++..+.... 
T Consensus       147 ~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  147 QKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             ceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            3889999999999999999999999999888888889999999999999999999999999 89999999997777665 


Q ss_pred             cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee-----eeeecccCCCcEEEEECCCCCEEEEEeCCCcE
Q 016257          194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDI  268 (392)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  268 (392)
                      ...+.....+.|+.++....+.+.+.....+.|..||+..++.     ..+.......|++++.+++|+++|.|+.||.|
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence            3344567889999887555555566666777788877654332     11112224589999999999999999999999


Q ss_pred             EEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       269 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      .|++..+.+..+..++.| ...|+.+.|+||.+++++.+.|..+.+..+..
T Consensus       306 ai~~~~~lq~~~~vk~aH-~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  306 AIYDAKSLQRLQYVKEAH-LGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEEeceeeeeEeehhhh-eeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999999999999999 88999999999999999999999999998876

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=1.7e-26  Score=205.55  Aligned_cols=196  Identities=16%  Similarity=0.118  Sum_probs=175.8

Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecc---cCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeee
Q 016257          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE---PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW  189 (392)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~  189 (392)
                      ..+++++.++.|++.+.|+..|.|-+|++++|-....+   ..|.++|++++...-++.+++++.+|.+++||..+...+
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~  528 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK  528 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence            57889999999999999999999999999998877666   467789999999999999999999999999999988877


Q ss_pred             EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEE
Q 016257          190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC  269 (392)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  269 (392)
                      ..+....  .+.++..+.....     ++.+.+|-.|.++|..+.+.++.+.+|...|++++|||||++|++++.|++|+
T Consensus       529 ~~l~l~~--~~~~iv~hr~s~l-----~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr  601 (910)
T KOG1539|consen  529 KSLRLGS--SITGIVYHRVSDL-----LAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIR  601 (910)
T ss_pred             eeeccCC--Ccceeeeeehhhh-----hhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEE
Confidence            7776544  5788888887765     68888899999999999999999999999999999999999999999999999


Q ss_pred             EEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC-CeEEEEEee
Q 016257          270 VVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WGAMITKLT  318 (392)
Q Consensus       270 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iw~~~  318 (392)
                      +||+.++.++-.+..   ..+.+++.|+|+|.+||+...| ..|++|.-.
T Consensus       602 ~wDlpt~~lID~~~v---d~~~~sls~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  602 TWDLPTGTLIDGLLV---DSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             EEeccCcceeeeEec---CCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence            999999998877643   6799999999999999999988 899999643

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.3e-27  Score=207.04  Aligned_cols=317  Identities=11%  Similarity=0.155  Sum_probs=246.1

Q ss_pred             CCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCc--cceeeccccCCC
Q 016257           31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA--TDINLLAKKMPP  108 (392)
Q Consensus        31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~~  108 (392)
                      +|.|+.|++|.+.........  .....++.|.+.|+.+...-+++.|++++.|-+|++|+.....  +...       .
T Consensus        43 gGRDg~i~~W~~~~d~~~~s~--~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~st-------i  113 (735)
T KOG0308|consen   43 GGRDGIIRLWSVTQDSNEPST--PYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMST-------I  113 (735)
T ss_pred             cCCCceEEEeccccccCCccc--chhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhh-------h
Confidence            344788999999865543321  1345688999999999999999999999999999999987764  1111       1


Q ss_pred             CCCCCCeEEEEe-cCCCCEEEEEeCCCcEEEEeCCCCce--e--------eccc-CCCCcEEEEEecCCCCeEEEEcCCC
Q 016257          109 LQDAGPQKCLSF-SVDGSRFAAGGVDGHLRIMHWPSLRI--I--------LDEP-KAHKSVLDMDFSLDSEFLATTSTDG  176 (392)
Q Consensus       109 ~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~i~d~~~~~~--~--------~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~  176 (392)
                      -+|...|.|+++ .++..++|+|+-|+.|.+||+.++..  +        ..+. ++..+|++++.++.|..|++|+..+
T Consensus       114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek  193 (735)
T KOG0308|consen  114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK  193 (735)
T ss_pred             hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc
Confidence            148899999999 78888999999999999999987732  1        1122 4556899999999999999999999


Q ss_pred             cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCC
Q 016257          177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG  256 (392)
Q Consensus       177 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~  256 (392)
                      .+++||.++.+.+..+.+|.. .|+.+..++||..     +++++.||+|++||+...+++.++..|...+.++..+|+=
T Consensus       194 ~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~-----~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf  267 (735)
T KOG0308|consen  194 DLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTR-----LLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSF  267 (735)
T ss_pred             ceEEeccccccceeeeecccc-ceEEEEEcCCCCe-----EeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCc
Confidence            999999999999999997665 7999999999998     8999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEecCCceee-eeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccce---------
Q 016257          257 KYLAMGSKDGDICVVDVKKMEIN-HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEW---------  326 (392)
Q Consensus       257 ~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---------  326 (392)
                      .++++|+.||.|..=|+++.... .....   ..+|..+..+...+-+-+++.|+.|+-|.......+.+.         
T Consensus       268 ~~vYsG~rd~~i~~Tdl~n~~~~tlick~---daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~  344 (735)
T KOG0308|consen  268 THVYSGGRDGNIYRTDLRNPAKSTLICKE---DAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTD  344 (735)
T ss_pred             ceEEecCCCCcEEecccCCchhheEeecC---CCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCccccc
Confidence            99999999999999999985433 33322   557888887755555577888999999977643222111         


Q ss_pred             ------ee-----eeeeeee-------eeeceEEEEeeecceeeeecccccccccCC
Q 016257          327 ------QI-----YSLLLAL-------FLASAVVFYIFFENSDSFWNFPVARNQHGG  365 (392)
Q Consensus       327 ------~~-----~~~~~~~-------~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~  365 (392)
                            ..     ...+.+.       ......+++--.+|.+.+||+-.+..+...
T Consensus       345 ~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~  401 (735)
T KOG0308|consen  345 SNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDF  401 (735)
T ss_pred             CCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhc
Confidence                  00     0011111       112234555567899999999877655443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=5.9e-27  Score=186.68  Aligned_cols=254  Identities=14%  Similarity=0.203  Sum_probs=192.1

Q ss_pred             CceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccce---------------------------------
Q 016257           53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI---------------------------------   99 (392)
Q Consensus        53 ~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~---------------------------------   99 (392)
                      +.....|++|.+.|++++|+.||++|++++.|+.|++|+++......                                 
T Consensus        76 pl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~  155 (420)
T KOG2096|consen   76 PLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGN  155 (420)
T ss_pred             chhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCC
Confidence            44455789999999999999999999999999999999997643200                                 


Q ss_pred             -----eecccc----------C----CCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEE
Q 016257          100 -----NLLAKK----------M----PPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (392)
Q Consensus       100 -----~~~~~~----------~----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i  160 (392)
                           ....+.          .    ..-.|.-.+..+-...++.+|++++.|..|.+|+++ |+.+..+......-+..
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a  234 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA  234 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence                 000000          0    000123344555555677899999999999999998 77776666555667788


Q ss_pred             EecCCCCeEEEEcCCCcEEEEECC---CC-----eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC
Q 016257          161 DFSLDSEFLATTSTDGSARIWKTE---DG-----VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (392)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~vwd~~---~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~  232 (392)
                      +.||+|+++++++-.--|++|.+-   .|     +....+.+| ...|..++|+++..+     +++.+.||.+++||.+
T Consensus       235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH-~saV~~~aFsn~S~r-----~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH-QSAVLAAAFSNSSTR-----AVTVSKDGKWRIWDTD  308 (420)
T ss_pred             eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc-hhheeeeeeCCCcce-----eEEEecCCcEEEeecc
Confidence            999999999999988889999863   22     223344544 457999999999998     8999999999999986


Q ss_pred             Cce-------eeeee----cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCC
Q 016257          233 TWN-------KIGHK----RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (392)
Q Consensus       233 ~~~-------~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  301 (392)
                      -.-       .++..    ......-..++.+|+|+.||... ...+++|..++++....+...| ...|++++|+++|+
T Consensus       309 VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h-~~~Is~is~~~~g~  386 (420)
T KOG2096|consen  309 VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIH-STTISSISYSSDGK  386 (420)
T ss_pred             ceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhh-cCceeeEEecCCCc
Confidence            321       11111    11233444799999999998876 4579999999999888888899 99999999999999


Q ss_pred             eEEEEeCCCeEEEEE
Q 016257          302 VVLTASKEWGAMITK  316 (392)
Q Consensus       302 ~l~~~~~dg~i~iw~  316 (392)
                      ++++++ |..+++..
T Consensus       387 ~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  387 YIATCG-DRYVRVIR  400 (420)
T ss_pred             EEeeec-ceeeeeec
Confidence            999987 55777765

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.1e-28  Score=209.56  Aligned_cols=284  Identities=17%  Similarity=0.193  Sum_probs=221.9

Q ss_pred             EEEEc-CCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC--
Q 016257           68 TIAVN-PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL--  144 (392)
Q Consensus        68 ~~~~s-p~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--  144 (392)
                      .+..+ |.+++|++|++||.|++|+........... -......|...|+.+....+++.|++++.|-+|++|+...+  
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~  107 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT  107 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccc-hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc
Confidence            44444 467789999999999999986654311110 00111237789999999999999999999999999999776  


Q ss_pred             ceeecccCCCCcEEEEEe-cCCCCeEEEEcCCCcEEEEECCCCee--eE--------EEecCCCcceEEEEecCCCCcce
Q 016257          145 RIILDEPKAHKSVLDMDF-SLDSEFLATTSTDGSARIWKTEDGVA--WT--------FLTRNSDEKIELCRFSKDGTKPF  213 (392)
Q Consensus       145 ~~~~~~~~~~~~i~~i~~-~~~~~~l~~~~~d~~i~vwd~~~~~~--~~--------~~~~~~~~~v~~~~~~~~~~~~~  213 (392)
                      -+...+..|.+.|.+++. -++...+|+|+-|+.|.+||+.++..  +.        .+..++...|++++.++.+..  
T Consensus       108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~--  185 (735)
T KOG0308|consen  108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI--  185 (735)
T ss_pred             hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE--
Confidence            455667778889999999 77888999999999999999997622  22        222244568999999999864  


Q ss_pred             EEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEE
Q 016257          214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL  293 (392)
Q Consensus       214 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~  293 (392)
                         +++|+..+.+++||.++++.+..+++|...|.++-.++||..+++++.||+|++||+...+++..+ ..| ...|++
T Consensus       186 ---ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~-~vH-~e~VWa  260 (735)
T KOG0308|consen  186 ---IVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY-IVH-KEGVWA  260 (735)
T ss_pred             ---EEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE-Eec-cCceEE
Confidence               789999999999999999999999999999999999999999999999999999999999988886 688 777999


Q ss_pred             EEEeeCCCeEEEEeCCCeEEEEEeecCcccc-ceeeeeeeeeeee--eceEEEEeeecceeeeeccccc
Q 016257          294 VEFCPTQRVVLTASKEWGAMITKLTVPADWK-EWQIYSLLLALFL--ASAVVFYIFFENSDSFWNFPVA  359 (392)
Q Consensus       294 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~W~~~~~  359 (392)
                      +..+|+-.++++|+.||.|..-++..+.... .+........+.+  ....+-.+..|..|+=|.....
T Consensus       261 L~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~  329 (735)
T KOG0308|consen  261 LQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD  329 (735)
T ss_pred             EeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence            9999999999999999999999988753221 1111111111111  1233356667899999987543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.96  E-value=1.6e-26  Score=201.76  Aligned_cols=338  Identities=14%  Similarity=0.112  Sum_probs=241.1

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCcc-----------ccCC------ceE------EEeeCC
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSV-----------YTSP------LVT------YVFDES   62 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~-----------~~~~------~~~------~~~~~h   62 (392)
                      -|++++|...+....++++++.      |..|+||.+...+..-           ...+      ...      ..+.||
T Consensus       193 WIrsl~f~~~~~~~~~laS~SQ------D~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH  266 (764)
T KOG1063|consen  193 WIRSLAFARLGGDDLLLASSSQ------DRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH  266 (764)
T ss_pred             hhhhhhhhccCCCcEEEEecCC------ceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence            5788899887664467777666      7789999987544110           0000      001      124599


Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCC-CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL-QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~  141 (392)
                      ++.|+++.|+|.+..|++++.|.++.+|...+...+..-... .... .........-|+|+++.+++-+..|-.++|..
T Consensus       267 eDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vR-lGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt  345 (764)
T KOG1063|consen  267 EDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVR-LGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKT  345 (764)
T ss_pred             ccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEE-eecccccccceeeEEEcCCCCEEEEecccCcEEEEec
Confidence            999999999999999999999999999997665322221111 1111 22346788999999999999999999999984


Q ss_pred             CCC---ceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee------------------------------
Q 016257          142 PSL---RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA------------------------------  188 (392)
Q Consensus       142 ~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~------------------------------  188 (392)
                      +..   .+.....+|.+.|.+++|+|.|++|++.+.|.+-|+|---..+.                              
T Consensus       346 ~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSg  425 (764)
T KOG1063|consen  346 KDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSG  425 (764)
T ss_pred             cCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeec
Confidence            332   22334567778999999999999999999999888874320000                              


Q ss_pred             --------------------------------------------------------------------------------
Q 016257          189 --------------------------------------------------------------------------------  188 (392)
Q Consensus       189 --------------------------------------------------------------------------------  188 (392)
                                                                                                      
T Consensus       426 AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~  505 (764)
T KOG1063|consen  426 ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT  505 (764)
T ss_pred             ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence                                                                                            


Q ss_pred             ------------eEEEecCCCcceEEEEecCCCCcceEEEEEEeC-----CccEEEEEeCCCceeeeeecccCCCcEEEE
Q 016257          189 ------------WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-----DKALLAVYDISTWNKIGHKRLLRKPASVLS  251 (392)
Q Consensus       189 ------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~  251 (392)
                                  ++++. +|...|++++.+|+++.     ++++.     +...|.+|+..+...++.+..|.-.|+.++
T Consensus       506 EdqLq~~tLwPEv~KLY-GHGyEv~~l~~s~~gnl-----iASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~  579 (764)
T KOG1063|consen  506 EDQLQQNTLWPEVHKLY-GHGYEVYALAISPTGNL-----IASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLA  579 (764)
T ss_pred             HHHHHHhccchhhHHhc-cCceeEEEEEecCCCCE-----EeehhhhCCccceEEEEEeccchhhhheecccceEEEEEE
Confidence                        00111 12345888999999985     44444     345799999999999989999999999999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEecCCceeee---eeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccc---
Q 016257          252 ISLDGKYLAMGSKDGDICVVDVKKMEINH---WSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKE---  325 (392)
Q Consensus       252 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~---  325 (392)
                      |||||++|++.+.|.++.+|.........   ...+.| ..-|+++.|+|++.+++|+|.|.+|++|..........   
T Consensus       580 FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~H-tRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~  658 (764)
T KOG1063|consen  580 FSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAH-TRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF  658 (764)
T ss_pred             ECCCCcEEEEeecCceEEeeeeecccchhhhhcccccc-ceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh
Confidence            99999999999999999999886543222   123678 88999999999999999999999999999986622111   


Q ss_pred             ---------eeeeeeeeeeeeeceEEEEeeecceeeeeccc
Q 016257          326 ---------WQIYSLLLALFLASAVVFYIFFENSDSFWNFP  357 (392)
Q Consensus       326 ---------~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~  357 (392)
                               ..+.+.+....-....++.+.-.|.|.+|...
T Consensus       659 a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  659 ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             chhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence                     11111111111122245556678999999976

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.96  E-value=2.4e-25  Score=187.74  Aligned_cols=278  Identities=17%  Similarity=0.224  Sum_probs=211.0

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCC-CCCeeEEEEcCCCCeEEEEeC
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-EGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ..|..+.|+|.+.+ .++..|.++        +..|  +..+..+.+   ....++.+ ...|.|++|.++|+ +++|..
T Consensus       201 e~v~~a~FHPtd~n-liit~Gk~H--------~~Fw--~~~~~~l~k---~~~~fek~ekk~Vl~v~F~engd-viTgDS  265 (626)
T KOG2106|consen  201 EVVFLATFHPTDPN-LIITCGKGH--------LYFW--TLRGGSLVK---RQGIFEKREKKFVLCVTFLENGD-VITGDS  265 (626)
T ss_pred             ceEEEEEeccCCCc-EEEEeCCce--------EEEE--EccCCceEE---EeeccccccceEEEEEEEcCCCC-EEeecC
Confidence            34678899998876 556666554        4455  444443322   11223333 26799999999984 779999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee----------------
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII----------------  147 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~----------------  147 (392)
                      +|.|.||+..+.+......       .|.+.|.+++...+|. |++|+.|..|..||-. .+..                
T Consensus       266 ~G~i~Iw~~~~~~~~k~~~-------aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~  336 (626)
T KOG2106|consen  266 GGNILIWSKGTNRISKQVH-------AHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVA  336 (626)
T ss_pred             CceEEEEeCCCceEEeEee-------ecCCceEEEEEecCcc-EeecCccceEEecccc-ccccccccCchhcCCeeEEe
Confidence            9999999986655433322       3889999999999995 5559999999999831 1110                


Q ss_pred             -------------------------ecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEE
Q 016257          148 -------------------------LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL  202 (392)
Q Consensus       148 -------------------------~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~  202 (392)
                                               ....+|..+...++.+|+.+++++++.|+.+++|+  ..+...+..  ...++.+
T Consensus       337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~--~~d~~~~  412 (626)
T KOG2106|consen  337 EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI--IEDPAEC  412 (626)
T ss_pred             cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE--ecCceeE
Confidence                                     01134445677899999999999999999999999  444444333  3447899


Q ss_pred             EEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce-eeee
Q 016257          203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME-INHW  281 (392)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~  281 (392)
                      +.|+|.| .     ++.+...|...+.|.++...+..... ..++++++|+|+|.+||.|+.|+.|+||.+.... ....
T Consensus       413 ~~fhpsg-~-----va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r  485 (626)
T KOG2106|consen  413 ADFHPSG-V-----VAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR  485 (626)
T ss_pred             eeccCcc-e-----EEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE
Confidence            9999999 4     79999999999999999766655554 8899999999999999999999999999987644 4444


Q ss_pred             eeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          282 SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       282 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      ....+ .++|+.+.||+|+++|.+-+.|-.|..|.-.
T Consensus       486 ~~k~~-gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  486 VGKCS-GSPITHLDWSSDSQFLVSNSGDYEILYWKPS  521 (626)
T ss_pred             eeeec-CceeEEeeecCCCceEEeccCceEEEEEccc
Confidence            44555 6999999999999999999999999999444

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=1.3e-26  Score=202.98  Aligned_cols=290  Identities=15%  Similarity=0.190  Sum_probs=218.2

Q ss_pred             eeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCC-----------CC
Q 016257            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-----------GD   76 (392)
Q Consensus         8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-----------~~   76 (392)
                      ..+.|.+..+.+.. +++        +..+.+|+++...+    . -....+--|...|+.+.--|-           ..
T Consensus       328 IA~~Fdet~~klsc-VYn--------dhSlYvWDvrD~~k----v-gk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~  393 (1080)
T KOG1408|consen  328 IACQFDETTDKLSC-VYN--------DHSLYVWDVRDVNK----V-GKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG  393 (1080)
T ss_pred             eEEEecCCCceEEE-EEc--------CceEEEEecccccc----c-cceeeeeeccceeeeeccccccccCcccccCCcc
Confidence            45778887776443 332        44577888764321    1 112234457888888776551           12


Q ss_pred             eEEEEeCCCeEEEEEEeCCccce----eeccc--------------------------cCCCCCCCCCeEEEEecCCCCE
Q 016257           77 DFVCSTTNGGCKLFEVYGGATDI----NLLAK--------------------------KMPPLQDAGPQKCLSFSVDGSR  126 (392)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~----~~~~~--------------------------~~~~~~~~~~v~~~~~s~~~~~  126 (392)
                      .+++++.|++|++|++.......    .+...                          ..........+.+++.||+|++
T Consensus       394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh  473 (1080)
T KOG1408|consen  394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH  473 (1080)
T ss_pred             ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence            58899999999999997632100    00000                          0011223457899999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecC---CCCeEEEEcCCCcEEEEECCCCe-eeEEEecCCCcceE-
Q 016257          127 FAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL---DSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIE-  201 (392)
Q Consensus       127 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~---~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~v~-  201 (392)
                      |++|..-|++++|++.+.+....+..|...|.++.|+.   ..++|++++.|+-|.|||+...- .++++..| ...|+ 
T Consensus       474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~H-SssITs  552 (1080)
T KOG1408|consen  474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGH-SSSITS  552 (1080)
T ss_pred             ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccc-ccceeE
Confidence            99999999999999999888888888888999999986   35789999999999999986432 22222222 22344 


Q ss_pred             ------------------------------------------------EEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257          202 ------------------------------------------------LCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (392)
Q Consensus       202 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~  233 (392)
                                                                      .++..|..++     +++++.|..|+|||+.+
T Consensus       553 vKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~-----v~t~cQDrnirif~i~s  627 (1080)
T KOG1408|consen  553 VKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL-----VVTVCQDRNIRIFDIES  627 (1080)
T ss_pred             EEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcce-----EEEEecccceEEEeccc
Confidence                                                            4555555544     68999999999999999


Q ss_pred             ceeeeeecc---cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCC
Q 016257          234 WNKIGHKRL---LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW  310 (392)
Q Consensus       234 ~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  310 (392)
                      ++..+.+++   |++..-.+...|.|.|+|+.+.|.++.++|..+++++... .+| ...|+.+.|.+|-++|++.+.||
T Consensus       628 gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m-~GH-sE~VTG~kF~nDCkHlISvsgDg  705 (1080)
T KOG1408|consen  628 GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM-TGH-SEAVTGVKFLNDCKHLISVSGDG  705 (1080)
T ss_pred             cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh-cCc-chheeeeeecccchhheeecCCc
Confidence            999888865   4566778899999999999999999999999999998877 589 99999999999999999999999


Q ss_pred             eEEEEEeec
Q 016257          311 GAMITKLTV  319 (392)
Q Consensus       311 ~i~iw~~~~  319 (392)
                      .|.||.+..
T Consensus       706 CIFvW~lp~  714 (1080)
T KOG1408|consen  706 CIFVWKLPL  714 (1080)
T ss_pred             eEEEEECch
Confidence            999999864

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2e-27  Score=209.78  Aligned_cols=292  Identities=15%  Similarity=0.162  Sum_probs=219.0

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCC---CCeeEEEEcC-CCCeEE
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE---GDPMTIAVNP-SGDDFV   79 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~sp-~~~~l~   79 (392)
                      .++...++-+++..  .+++.|..        .+.+|.+.+.....    .+...++...   -.+..+.|+. +.++||
T Consensus        39 k~~~nAIs~nr~~~--qiv~AGrs--------~lklyai~~~~~~~----~~~~~~k~kqn~~~S~~DVkW~~~~~NlIA  104 (839)
T KOG0269|consen   39 KAKANAISVNRDIN--QIVVAGRS--------LLKLYAINPNDFSE----KCNHRFKTKQNKFYSAADVKWGQLYSNLIA  104 (839)
T ss_pred             ccccceEeecCCcc--eeEEeccc--------ceeeEeeCcccCCc----ceeeecccccceeeehhhcccccchhhhhe
Confidence            45566666666553  35554444        36688887665433    2223333222   2456778875 567999


Q ss_pred             EEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEE
Q 016257           80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL  158 (392)
Q Consensus        80 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~  158 (392)
                      +++..|.|.+||+........+    ....+|...++++.|++ ...+|++|+.||.|++||++..+....+......|.
T Consensus       105 T~s~nG~i~vWdlnk~~rnk~l----~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiR  180 (839)
T KOG0269|consen  105 TCSTNGVISVWDLNKSIRNKLL----TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIR  180 (839)
T ss_pred             eecCCCcEEEEecCccccchhh----hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhh
Confidence            9999999999999763111111    11224889999999998 677899999999999999999888877888777999


Q ss_pred             EEEecC-CCCeEEEEcCCCcEEEEECCCCe-eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee
Q 016257          159 DMDFSL-DSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (392)
Q Consensus       159 ~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~  236 (392)
                      ++.|+| .+..++++...|.+++||++... +...+.. |.++|.++.|+|++.+     +++|+.|+.|+|||+.+.+.
T Consensus       181 DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A-H~GpV~c~nwhPnr~~-----lATGGRDK~vkiWd~t~~~~  254 (839)
T KOG0269|consen  181 DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA-HNGPVLCLNWHPNREW-----LATGGRDKMVKIWDMTDSRA  254 (839)
T ss_pred             ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc-ccCceEEEeecCCCce-----eeecCCCccEEEEeccCCCc
Confidence            999999 67789999999999999999754 4444444 4569999999998887     89999999999999986554


Q ss_pred             eeeecc-cCCCcEEEEECCCCC-EEEEEe--CCCcEEEEecCCceeeeeeeccccCcceEEEEEee-CCCeEEEEeCCCe
Q 016257          237 IGHKRL-LRKPASVLSISLDGK-YLAMGS--KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP-TQRVVLTASKEWG  311 (392)
Q Consensus       237 ~~~~~~-~~~~v~~~~~s~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~  311 (392)
                      ...... ...++..+.|-|... +||+++  .|-.|+|||++..-.+......| ...++.++|.. |...+.+++.||.
T Consensus       255 ~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH-~~~vt~i~W~~~d~~~l~s~sKD~t  333 (839)
T KOG0269|consen  255 KPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH-TDSVTGIAWDSGDRINLWSCSKDGT  333 (839)
T ss_pred             cceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc-CccccceeccCCCceeeEeecCccH
Confidence            322222 256899999999765 466665  47789999999888777766788 89999999976 4457889999999


Q ss_pred             EEEEEeecC
Q 016257          312 AMITKLTVP  320 (392)
Q Consensus       312 i~iw~~~~~  320 (392)
                      +....++..
T Consensus       334 v~qh~~kna  342 (839)
T KOG0269|consen  334 VLQHLFKNA  342 (839)
T ss_pred             HHHhhhhcc
Confidence            987766544

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.4e-26  Score=184.52  Aligned_cols=289  Identities=12%  Similarity=0.145  Sum_probs=230.7

Q ss_pred             ceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC
Q 016257           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (392)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (392)
                      .+...+.||.+.|+.++.......+.+++.|.+.+||.++++.+...+..       |.+.|++++|++.+.++++++.|
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~G-------H~GSVNsikfh~s~~L~lTaSGD  211 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTG-------HTGSVNSIKFHNSGLLLLTASGD  211 (481)
T ss_pred             eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecc-------cccceeeEEeccccceEEEccCC
Confidence            34556889999999999987777899999999999999999998766543       88999999999999999999999


Q ss_pred             CcEEEEeC------CC------------------------------C----ceeecccCCCCcEEEEEecCCCCeEEEEc
Q 016257          134 GHLRIMHW------PS------------------------------L----RIILDEPKAHKSVLDMDFSLDSEFLATTS  173 (392)
Q Consensus       134 g~i~i~d~------~~------------------------------~----~~~~~~~~~~~~i~~i~~~~~~~~l~~~~  173 (392)
                      ++..||..      ..                              +    .++..+.+|...|.+..|-..|+.+++++
T Consensus       212 ~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS  291 (481)
T KOG0300|consen  212 ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS  291 (481)
T ss_pred             cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee
Confidence            99999951      10                              0    01233456667888899999999999999


Q ss_pred             CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc-eeeeeecccCCCcEEEEE
Q 016257          174 TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRLLRKPASVLSI  252 (392)
Q Consensus       174 ~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~  252 (392)
                      .|.+..+||+++++.+..+.+|.. ..+.++-+|..+.     +++++.|.+.++||++.. ..+..+.+|...|+++.|
T Consensus       292 WDRTAnlwDVEtge~v~~LtGHd~-ELtHcstHptQrL-----VvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF  365 (481)
T KOG0300|consen  292 WDRTANLWDVETGEVVNILTGHDS-ELTHCSTHPTQRL-----VVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVF  365 (481)
T ss_pred             ccccceeeeeccCceeccccCcch-hccccccCCcceE-----EEEeccCceeEeccchhhcceeeeecccccceeEEEE
Confidence            999999999999999999987754 6888888998886     799999999999999843 346778999999999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEecCCcee-eeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccc--c---ce
Q 016257          253 SLDGKYLAMGSKDGDICVVDVKKMEI-NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADW--K---EW  326 (392)
Q Consensus       253 s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~--~---~~  326 (392)
                      ..+ ..+++|+.|.+|++||+++... +..+..   .++++.++.+..++.|+.--++..|++||++...-.  +   ..
T Consensus       366 ~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRq  441 (481)
T KOG0300|consen  366 NTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQ  441 (481)
T ss_pred             ecC-CceeecCCCceEEEeeeccccCcceeeec---CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccc
Confidence            866 4678999999999999998653 444422   689999999988889999888999999999854221  1   00


Q ss_pred             eeeeeeeee----eeeceEEEEeeecceeeeeccccc
Q 016257          327 QIYSLLLAL----FLASAVVFYIFFENSDSFWNFPVA  359 (392)
Q Consensus       327 ~~~~~~~~~----~~~~~~~~~~~~d~~i~~W~~~~~  359 (392)
                      ....+..+.    .....-++++++|..+.=|.+.+.
T Consensus       442 gHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  442 GHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             ccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            111111111    122356789999999999998754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=1.4e-24  Score=188.38  Aligned_cols=263  Identities=16%  Similarity=0.210  Sum_probs=191.8

Q ss_pred             cCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeE-EEEeCCCeEEEEEEeCCccceeeccccCCCCCCC
Q 016257           34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA  112 (392)
Q Consensus        34 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  112 (392)
                      ++.+.+|+.+.        ......+..+. .+.+++|+|+++.+ ++++.++.|++||..+++....+.        ..
T Consensus        10 d~~v~~~d~~t--------~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------~~   72 (300)
T TIGR03866        10 DNTISVIDTAT--------LEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--------SG   72 (300)
T ss_pred             CCEEEEEECCC--------CceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--------CC
Confidence            66788887652        22334555543 47789999999876 566788999999998776433221        11


Q ss_pred             CCeEEEEecCCCCEEEEE-eCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCC-cEEEEECCCCeeeE
Q 016257          113 GPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG-SARIWKTEDGVAWT  190 (392)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-~i~vwd~~~~~~~~  190 (392)
                      ..+..++|+|+++.++++ ..++.+++||+++.+.+..+. ....+.+++|+|+++++++++.++ .+.+||.++++...
T Consensus        73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~  151 (300)
T TIGR03866        73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD  151 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence            235678999999977655 468999999999877665443 223467899999999999888765 46778998887766


Q ss_pred             EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC-------CCcEEEEECCCCCEEEEE-
Q 016257          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-------KPASVLSISLDGKYLAMG-  262 (392)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~~~-  262 (392)
                      .....  .....++|+|++..+    ++++..++.|++||+++++.+..+..+.       .....++|+|++++++++ 
T Consensus       152 ~~~~~--~~~~~~~~s~dg~~l----~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~  225 (300)
T TIGR03866       152 NVLVD--QRPRFAEFTADGKEL----WVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL  225 (300)
T ss_pred             EEEcC--CCccEEEECCCCCEE----EEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence            55433  246789999999862    2455568999999999987765543221       123468899999986554 


Q ss_pred             eCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEE-eCCCeEEEEEeecCccc
Q 016257          263 SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA-SKEWGAMITKLTVPADW  323 (392)
Q Consensus       263 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~  323 (392)
                      +.++.+.+||+++++......  + ...+.+++|+|+|++|+++ +.+|.|++||+......
T Consensus       226 ~~~~~i~v~d~~~~~~~~~~~--~-~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~  284 (300)
T TIGR03866       226 GPANRVAVVDAKTYEVLDYLL--V-GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI  284 (300)
T ss_pred             CCCCeEEEEECCCCcEEEEEE--e-CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence            456789999999888776543  2 4578999999999998876 46899999999875543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.2e-25  Score=178.42  Aligned_cols=245  Identities=16%  Similarity=0.258  Sum_probs=194.2

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  142 (392)
                      .+.|.++.|+|.++.|++++.||.+++|++.......        .+.|..++.+++|.++ ..+++|+.||.|+.+|+.
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~--------~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln   83 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL--------KFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLN   83 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh--------heecCCceeeeeccCC-ceEEEeccCceEEEEEec
Confidence            5689999999999999999999999999998774322        2347889999999874 478999999999999999


Q ss_pred             CCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCC
Q 016257          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD  222 (392)
Q Consensus       143 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  222 (392)
                      +++.. .+..|..+|.++..++....+++|+.|++|++||.+.......+...  ..|.++....+  .     ++.+..
T Consensus        84 ~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~--kkVy~~~v~g~--~-----LvVg~~  153 (323)
T KOG1036|consen   84 TGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG--KKVYCMDVSGN--R-----LVVGTS  153 (323)
T ss_pred             CCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC--ceEEEEeccCC--E-----EEEeec
Confidence            87764 45677789999999998889999999999999999975555555433  36887776544  3     788899


Q ss_pred             ccEEEEEeCCCceeeeee--cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce---eeeeeecccc--------Cc
Q 016257          223 KALLAVYDISTWNKIGHK--RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME---INHWSKRLHL--------GT  289 (392)
Q Consensus       223 d~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~--------~~  289 (392)
                      +..+.+||+++.....+.  ...+..++++++-|++.=.++++-||.|.+=.++..+   ..+...+.|.        ..
T Consensus       154 ~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y  233 (323)
T KOG1036|consen  154 DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY  233 (323)
T ss_pred             CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence            999999999987654322  2345688999999998889999999998876555441   1111113331        34


Q ss_pred             ceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccce
Q 016257          290 SIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEW  326 (392)
Q Consensus       290 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  326 (392)
                      +|++++|+|--..|+||+.||.|-+||+...+.+...
T Consensus       234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~  270 (323)
T KOG1036|consen  234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL  270 (323)
T ss_pred             EeceeEeccccceEEecCCCceEEEccCcchhhhhhc
Confidence            8999999999999999999999999999987766544

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=7.7e-25  Score=184.71  Aligned_cols=317  Identities=13%  Similarity=0.202  Sum_probs=228.9

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d   84 (392)
                      -.|.|++|++.+..-.+.+.-.+     .+..+.+|+|......        ...+...+.|....|+|.+..|+.....
T Consensus       155 ~GV~~vaFsk~~~G~~l~~vD~s-----~~h~lSVWdWqk~~~~--------~~vk~sne~v~~a~FHPtd~nliit~Gk  221 (626)
T KOG2106|consen  155 RGVTCVAFSKINGGSLLCAVDDS-----NPHMLSVWDWQKKAKL--------GPVKTSNEVVFLATFHPTDPNLIITCGK  221 (626)
T ss_pred             ccceeeeecccCCCceEEEecCC-----Cccccchhhchhhhcc--------CcceeccceEEEEEeccCCCcEEEEeCC
Confidence            45899999996544234443322     4677889999844322        2233346788999999977766665667


Q ss_pred             CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecC
Q 016257           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL  164 (392)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~  164 (392)
                      +.+.+|+.+.+....+.-..+.   .....|.|++|.++|+ +++|..+|.|.||+..+.+...+...|.+.|.+++.-.
T Consensus       222 ~H~~Fw~~~~~~l~k~~~~fek---~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr  297 (626)
T KOG2106|consen  222 GHLYFWTLRGGSLVKRQGIFEK---REKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR  297 (626)
T ss_pred             ceEEEEEccCCceEEEeecccc---ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEec
Confidence            7899999988765443322111   1237899999999995 67899999999999988887777778888999999999


Q ss_pred             CCCeEEEEcCCCcEEEEECCCCee-----------eEE-----------------------------EecCCCcceEEEE
Q 016257          165 DSEFLATTSTDGSARIWKTEDGVA-----------WTF-----------------------------LTRNSDEKIELCR  204 (392)
Q Consensus       165 ~~~~l~~~~~d~~i~vwd~~~~~~-----------~~~-----------------------------~~~~~~~~v~~~~  204 (392)
                      +|.+| +|+.|+.|..||-.-.+.           +++                             .+.| ......++
T Consensus       298 ~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh-~delwgla  375 (626)
T KOG2106|consen  298 DGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGH-GDELWGLA  375 (626)
T ss_pred             CccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEec-ccceeeEE
Confidence            98755 599999999998321110           011                             1112 22466788


Q ss_pred             ecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec
Q 016257          205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR  284 (392)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  284 (392)
                      .+|+...     +++++.|+.+++|+  ..++. -.+....+..++.|+|.| .+|.|+..|...+.|.++...+..-. 
T Consensus       376 ~hps~~q-----~~T~gqdk~v~lW~--~~k~~-wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-  445 (626)
T KOG2106|consen  376 THPSKNQ-----LLTCGQDKHVRLWN--DHKLE-WTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-  445 (626)
T ss_pred             cCCChhh-----eeeccCcceEEEcc--CCcee-EEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-
Confidence            8888887     79999999999999  22333 223346788999999999 99999999999999999966665432 


Q ss_pred             cccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccc-c---------ceeeeeeeeeeeeeceEEEEeeecceeeee
Q 016257          285 LHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADW-K---------EWQIYSLLLALFLASAVVFYIFFENSDSFW  354 (392)
Q Consensus       285 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W  354 (392)
                       . ..+++.++|+|+|.+||.|+.|+.|+||.+...... .         ..++.++.     .+..+.+.+.|-.|-+|
T Consensus       446 -d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~-----Ds~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  446 -D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS-----DSQFLVSNSGDYEILYW  518 (626)
T ss_pred             -c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC-----CCceEEeccCceEEEEE
Confidence             2 689999999999999999999999999999754321 1         11222333     33444555568899999


Q ss_pred             ccc
Q 016257          355 NFP  357 (392)
Q Consensus       355 ~~~  357 (392)
                      .-.
T Consensus       519 ~~~  521 (626)
T KOG2106|consen  519 KPS  521 (626)
T ss_pred             ccc
Confidence            433

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.2e-25  Score=177.46  Aligned_cols=272  Identities=13%  Similarity=0.136  Sum_probs=204.1

Q ss_pred             eEEEEeCCCeEEEEEEeCCc----cceee-ccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeccc
Q 016257           77 DFVCSTTNGGCKLFEVYGGA----TDINL-LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP  151 (392)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~----~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  151 (392)
                      .|++|+....|.-+++....    ...+. ....+....|.+++++++.+  +.++++|+.|.+|+|||++.......+.
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll   80 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL   80 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence            36677777777666664332    00010 11112233488999999985  8899999999999999999998888888


Q ss_pred             CCCCcEEEEEecCCCC--eEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEE
Q 016257          152 KAHKSVLDMDFSLDSE--FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (392)
Q Consensus       152 ~~~~~i~~i~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~  229 (392)
                      .|.+.|+++.|.+.-.  .|++|+.||.|.+|+...-+.+..+..|.. .|+.++.+|.++.     .++-+.|+.+++|
T Consensus        81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~-~Vt~lsiHPS~KL-----ALsVg~D~~lr~W  154 (362)
T KOG0294|consen   81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG-QVTDLSIHPSGKL-----ALSVGGDQVLRTW  154 (362)
T ss_pred             ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc-ccceeEecCCCce-----EEEEcCCceeeee
Confidence            8999999999998654  899999999999999999999999988766 5999999999996     7888999999999


Q ss_pred             eCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC
Q 016257          230 DISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE  309 (392)
Q Consensus       230 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  309 (392)
                      |+-.++.-..... ....+.+.|+|.|.+++.+..++ |-||.+.+.++...+..   ...+.++.|- ++..|++|++|
T Consensus       155 NLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~  228 (362)
T KOG0294|consen  155 NLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDN  228 (362)
T ss_pred             hhhcCccceeecc-CCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCC
Confidence            9988876544433 33445599999999999988764 99999998877665532   3457777776 56689999999


Q ss_pred             CeEEEEEeecCccccce-eeeeeeeeeee----eceEEEEeeecceeeeecccccccc
Q 016257          310 WGAMITKLTVPADWKEW-QIYSLLLALFL----ASAVVFYIFFENSDSFWNFPVARNQ  362 (392)
Q Consensus       310 g~i~iw~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~d~~i~~W~~~~~~~~  362 (392)
                      +.|++||.+....+... .....+-....    ....+.+++.||.|++||+......
T Consensus       229 ~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~  286 (362)
T KOG0294|consen  229 EWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKK  286 (362)
T ss_pred             ceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccC
Confidence            99999999854332211 00001111111    1247788889999999999877443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.8e-26  Score=190.78  Aligned_cols=223  Identities=21%  Similarity=0.254  Sum_probs=188.2

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  142 (392)
                      .++|.+++-+|+|.+|+.|+..|.+++|.+.++.....+.       .|..+|+++.|+-||.+|++|+.||.|.+|.+-
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~-------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~  153 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS-------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT  153 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH-------hhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence            5789999999999999999899999999999998655442       377899999999999999999999999999862


Q ss_pred             ---------CCceeecccCCCCcEEEEEecCC--CCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCc
Q 016257          143 ---------SLRIILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (392)
Q Consensus       143 ---------~~~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (392)
                               +-++...+..|.-+|+++...+.  ..++++++.|.++++||+..+..+.++..+.  .+.+++.+|.+..
T Consensus       154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~--si~av~lDpae~~  231 (476)
T KOG0646|consen  154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS--SIKAVALDPAERV  231 (476)
T ss_pred             eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC--cceeEEEcccccE
Confidence                     22344555566669999988764  4689999999999999999999988887553  7999999999997


Q ss_pred             ceEEEEEEeCCccEEEEEeCCCce----------------eeeeecccCC--CcEEEEECCCCCEEEEEeCCCcEEEEec
Q 016257          212 PFLFCTVQRGDKALLAVYDISTWN----------------KIGHKRLLRK--PASVLSISLDGKYLAMGSKDGDICVVDV  273 (392)
Q Consensus       212 ~~~~~~~~~~~d~~i~v~d~~~~~----------------~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~iwd~  273 (392)
                           ++.|+.+|.|.+.++....                .+..+.+|.+  +|+|++++-||.+|++|+.||+++|||+
T Consensus       232 -----~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  232 -----VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             -----EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence                 7899999999998876432                2344566766  9999999999999999999999999999


Q ss_pred             CCceeeeeeeccccCcceEEEEEeeCCC
Q 016257          274 KKMEINHWSKRLHLGTSIALVEFCPTQR  301 (392)
Q Consensus       274 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~  301 (392)
                      .+.++++.+..  ..++|+.+.+.|-.+
T Consensus       307 ~S~Q~iRtl~~--~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  307 YSKQCIRTLQT--SKGPVTNLQINPLER  332 (476)
T ss_pred             chHHHHHHHhh--hccccceeEeecccc
Confidence            99999887642  278999999977544

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.3e-25  Score=196.88  Aligned_cols=200  Identities=12%  Similarity=0.100  Sum_probs=141.6

Q ss_pred             cEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc-
Q 016257          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-  234 (392)
Q Consensus       156 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~-  234 (392)
                      .+.+++.+|+|++|++|..-|+++||++...+....+..| +..|.|+.|+......-  .+++++.|..|.|||.... 
T Consensus       461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAH-esEilcLeyS~p~~~~k--LLASasrdRlIHV~Dv~rny  537 (1080)
T KOG1408|consen  461 GFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAH-ESEILCLEYSFPVLTNK--LLASASRDRLIHVYDVKRNY  537 (1080)
T ss_pred             ceEEEEECCCcceecccCccCceEEEEehhhhhhhheecc-cceeEEEeecCchhhhH--hhhhccCCceEEEEeccccc
Confidence            4667777777777777777777777777666666556555 45799999986422111  1799999999999998642 


Q ss_pred             eeeeeeccc-------------------------------------------------CCCcEEEEECCCCCEEEEEeCC
Q 016257          235 NKIGHKRLL-------------------------------------------------RKPASVLSISLDGKYLAMGSKD  265 (392)
Q Consensus       235 ~~~~~~~~~-------------------------------------------------~~~v~~~~~s~~~~~l~~~~~d  265 (392)
                      .+++++..|                                                 ...+..++..|..+++++++.|
T Consensus       538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQD  617 (1080)
T KOG1408|consen  538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQD  617 (1080)
T ss_pred             chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecc
Confidence            111122222                                                 2345577778888899999999


Q ss_pred             CcEEEEecCCceeeeeeecccc-CcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccce---eeeeeeeeeeeeceE
Q 016257          266 GDICVVDVKKMEINHWSKRLHL-GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEW---QIYSLLLALFLASAV  341 (392)
Q Consensus       266 g~i~iwd~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~  341 (392)
                      ..|+|||+++++..+.+...|. ++..-.+...|.|-||++.+.|.++.++|+-.++-....   .....-..+......
T Consensus       618 rnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkH  697 (1080)
T KOG1408|consen  618 RNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKH  697 (1080)
T ss_pred             cceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchh
Confidence            9999999999999888764331 577888999999999999999999999999876543211   111111222223446


Q ss_pred             EEEeeecceeeeecccc
Q 016257          342 VFYIFFENSDSFWNFPV  358 (392)
Q Consensus       342 ~~~~~~d~~i~~W~~~~  358 (392)
                      +++++.|+.|.+|.++.
T Consensus       698 lISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  698 LISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             heeecCCceEEEEECch
Confidence            77778899999999865

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=9.1e-27  Score=205.62  Aligned_cols=250  Identities=14%  Similarity=0.179  Sum_probs=193.8

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCC
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWP  142 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~  142 (392)
                      ....++...++-..++.+++.- ++||.+..................-...+..+.|+. +.++||+++..|.|.+||+.
T Consensus        40 ~~~nAIs~nr~~~qiv~AGrs~-lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln  118 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGRSL-LKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN  118 (839)
T ss_pred             cccceEeecCCcceeEEecccc-eeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence            4566777888888888877654 888887655432222111111111223566788876 67799999999999999997


Q ss_pred             C---CceeecccCCCCcEEEEEecC-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257          143 S---LRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       143 ~---~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (392)
                      .   .+.+..+..|...+.+++|++ ...+|++|+.||+|++||++..+...++....+ .|+.++|+|.....    ++
T Consensus       119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSE-SiRDV~fsp~~~~~----F~  193 (839)
T KOG0269|consen  119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSE-SIRDVKFSPGYGNK----FA  193 (839)
T ss_pred             ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccch-hhhceeeccCCCce----EE
Confidence            6   445556677878999999998 456899999999999999999988888877544 79999999986542    68


Q ss_pred             EeCCccEEEEEeCCCce-eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEe
Q 016257          219 QRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (392)
Q Consensus       219 ~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  297 (392)
                      ++.+.|.+.+||+|... +...+..|.++|.|+.|+|++.+||+|+.|+.|+|||+.+.+...... .+...++..++|-
T Consensus       194 s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~t-InTiapv~rVkWR  272 (839)
T KOG0269|consen  194 SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHT-INTIAPVGRVKWR  272 (839)
T ss_pred             EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeE-Eeecceeeeeeec
Confidence            88899999999999754 456778999999999999999999999999999999998765433332 2227899999999


Q ss_pred             eCCC-eEEEEe--CCCeEEEEEeecC
Q 016257          298 PTQR-VVLTAS--KEWGAMITKLTVP  320 (392)
Q Consensus       298 ~~~~-~l~~~~--~dg~i~iw~~~~~  320 (392)
                      |..+ .|++++  .|-.|+|||++.+
T Consensus       273 P~~~~hLAtcsmv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  273 PARSYHLATCSMVVDTSVHVWDVRRP  298 (839)
T ss_pred             cCccchhhhhhccccceEEEEeeccc
Confidence            9877 456554  4789999999854

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1.7e-25  Score=195.40  Aligned_cols=253  Identities=13%  Similarity=0.136  Sum_probs=210.2

Q ss_pred             cCceeEEEEcCCCCccccCCceEEEeeCCCCCeeE-EEEcC-CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCC
Q 016257           34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMT-IAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (392)
Q Consensus        34 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  111 (392)
                      ++++++|.-..+      .......+.+|.+-|.+ +++-+ ++-.+++|+.|..+.+|...+......+.       .|
T Consensus        34 d~t~~vw~~~~~------~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lk-------gH  100 (745)
T KOG0301|consen   34 DGTVKVWAKKGK------QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLK-------GH  100 (745)
T ss_pred             CCceeeeeccCc------ccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhh-------cc
Confidence            677888875322      22223557778887777 88876 44469999999999999998877554443       38


Q ss_pred             CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEE
Q 016257          112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF  191 (392)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  191 (392)
                      ...|.++....++. +++|+-|.++++|..  +++.....+|...|.++..-|++ .+++|+.|.+|++|.-  ++.+++
T Consensus       101 ~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~t  174 (745)
T KOG0301|consen  101 KSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKT  174 (745)
T ss_pred             ccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhh
Confidence            89999999888886 999999999999975  45555688898999999999987 8999999999999975  778888


Q ss_pred             EecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 016257          192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVV  271 (392)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  271 (392)
                      +.+|.+ .|+.+++-+++.      +++++.||.|++|++ +++.+..+.+|..-+.+++..+++..++++++|++++||
T Consensus       175 f~gHtD-~VRgL~vl~~~~------flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW  246 (745)
T KOG0301|consen  175 FSGHTD-CVRGLAVLDDSH------FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIW  246 (745)
T ss_pred             hccchh-heeeeEEecCCC------eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEe
Confidence            888654 799999999988      699999999999999 678888999999999999988888999999999999999


Q ss_pred             ecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          272 DVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       272 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      +..  ++.+.+  .|+...|+++.+-++|. |++|+.||.||||...
T Consensus       247 ~~~--e~~q~I--~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  247 KKD--ECVQVI--TLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             ecC--ceEEEE--ecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            977  555554  23266899999998887 7788999999999887

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.3e-25  Score=178.73  Aligned_cols=277  Identities=14%  Similarity=0.137  Sum_probs=196.1

Q ss_pred             eeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 016257           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR  145 (392)
Q Consensus        66 v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  145 (392)
                      ..|+.|++.|.+||+|+.||.|.|||+.+......+.       .|..+|.+++||+||++|++++.|..|.+||+..|.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls-------aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs   98 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS-------AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS   98 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh-------ccccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence            8899999999999999999999999999877433322       377899999999999999999999999999999998


Q ss_pred             eeecccCCCCcEEEEEecCCCC-eEEEEcCCCcEEEEECCCCeeeEEEec-CC----CcceEEEEecCCCCcceEEEEEE
Q 016257          146 IILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTR-NS----DEKIELCRFSKDGTKPFLFCTVQ  219 (392)
Q Consensus       146 ~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~----~~~v~~~~~~~~~~~~~~~~~~~  219 (392)
                      +..++ ....+|..+.|+|..+ ..++.-.+..-.+-++..++  +++.. ..    +....+..|.+.|++     +++
T Consensus        99 ~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~y-----Iit  170 (405)
T KOG1273|consen   99 PLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKY-----IIT  170 (405)
T ss_pred             ceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCE-----EEE
Confidence            76544 4567899999999543 33333334445566665432  22211 11    112234468889997     899


Q ss_pred             eCCccEEEEEeCCCceeeeeecccC-CCcEEEEECCCCCEEEEEeCCCcEEEEecCCc-------eee--eeeeccccCc
Q 016257          220 RGDKALLAVYDISTWNKIGHKRLLR-KPASVLSISLDGKYLAMGSKDGDICVVDVKKM-------EIN--HWSKRLHLGT  289 (392)
Q Consensus       220 ~~~d~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~  289 (392)
                      |...|.+.+||..+.+++..++... ..|..+.++..|++|++-+.|..|+.|+++.-       ++.  +.+...-...
T Consensus       171 GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~  250 (405)
T KOG1273|consen  171 GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL  250 (405)
T ss_pred             ecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence            9999999999999999988887766 78999999999999999999999999998731       111  1111111133


Q ss_pred             ceEEEEEeeCCCeEEEEeC-CCeEEEEEeecCccccceeee---eeeeeeeeeceEEEEeeecceeeeeccc
Q 016257          290 SIALVEFCPTQRVVLTASK-EWGAMITKLTVPADWKEWQIY---SLLLALFLASAVVFYIFFENSDSFWNFP  357 (392)
Q Consensus       290 ~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~i~~W~~~  357 (392)
                      .=.+++|+.+|.++++++. -..++||.-..+.-.++.+-.   ...+.........+.....|.+++|...
T Consensus       251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~  322 (405)
T KOG1273|consen  251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVV  322 (405)
T ss_pred             hhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEee
Confidence            4567889999999887764 468999988766444332110   0111111111122222257899999865

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3.7e-25  Score=175.61  Aligned_cols=256  Identities=15%  Similarity=0.125  Sum_probs=190.8

Q ss_pred             eCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEeCCCcEE
Q 016257           60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLR  137 (392)
Q Consensus        60 ~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~  137 (392)
                      .+|.+-|.++.|.+.|+.+|+++.|++++|||.............-   -.|.+.|..+.|.+  -|+.+|+++.|+++.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W---rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW---RAHDGSIWRVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE---EecCCcEEEEEecCccccceEEEEecCCcee
Confidence            5789999999999999999999999999999986554433332211   13789999999966  589999999999999


Q ss_pred             EEeCCC---------CceeecccCCCCcEEEEEecC--CCCeEEEEcCCCcEEEEECCCCeeeEEEe------------c
Q 016257          138 IMHWPS---------LRIILDEPKAHKSVLDMDFSL--DSEFLATTSTDGSARIWKTEDGVAWTFLT------------R  194 (392)
Q Consensus       138 i~d~~~---------~~~~~~~~~~~~~i~~i~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~------------~  194 (392)
                      ||.-..         ......+......|+++.|.|  -|-.|++++.||.++||+.-+...+..+.            .
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence            997421         112233445566899999999  46689999999999999976543333221            1


Q ss_pred             CCCcceEEEEecCCCCcceEEEEEEeCCc-----cEEEEEeCCCc----eeeeeecccCCCcEEEEECCC----CCEEEE
Q 016257          195 NSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDISTW----NKIGHKRLLRKPASVLSISLD----GKYLAM  261 (392)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~d-----~~i~v~d~~~~----~~~~~~~~~~~~v~~~~~s~~----~~~l~~  261 (392)
                      .+..+..|+.|+|.....-+  ++.++.+     +.++||.....    ..+..+..+..+|++++|.|+    -..||+
T Consensus       167 ~~~~~~~CvsWn~sr~~~p~--iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv  244 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRMHEPL--IAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV  244 (361)
T ss_pred             cccCcceEEeeccccccCce--EEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence            23346789999986543222  4555444     47888865533    345667789999999999996    257999


Q ss_pred             EeCCCcEEEEecCCce--------------------eeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCc
Q 016257          262 GSKDGDICVVDVKKME--------------------INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (392)
Q Consensus       262 ~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  321 (392)
                      ++.|| |+||.++...                    .+.. ...| .+.|+.+.|+-.|..|++.|.||.||+|+.+...
T Consensus       245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~-~~~H-~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n  321 (361)
T KOG2445|consen  245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSE-LDDH-NGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN  321 (361)
T ss_pred             eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeee-ccCC-CCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence            99999 9999987311                    1111 2568 8899999999999999999999999999887554


Q ss_pred             cc
Q 016257          322 DW  323 (392)
Q Consensus       322 ~~  323 (392)
                      .+
T Consensus       322 ~~  323 (361)
T KOG2445|consen  322 LW  323 (361)
T ss_pred             hh
Confidence            44

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.6e-25  Score=185.76  Aligned_cols=236  Identities=14%  Similarity=0.165  Sum_probs=190.5

Q ss_pred             CeEEEEe-CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCC
Q 016257           76 DDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (392)
Q Consensus        76 ~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  154 (392)
                      .+++++. ....+.+|.+........       ..--.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q-------~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY  123 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQ-------YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY  123 (476)
T ss_pred             hheeeecccCccccccccCchhhhhh-------hcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhc
Confidence            5666654 344688999866543221       11135789999999999999998899999999999999998888888


Q ss_pred             CcEEEEEecCCCCeEEEEcCCCcEEEEECC---------CCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccE
Q 016257          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTE---------DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (392)
Q Consensus       155 ~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~  225 (392)
                      ..|+++.|+-|+.+|++|+.||.|.+|.+.         +-++.+.+..|. -+|+.+...+.+....   +++++.|.+
T Consensus       124 Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht-lsITDl~ig~Gg~~~r---l~TaS~D~t  199 (476)
T KOG0646|consen  124 QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT-LSITDLQIGSGGTNAR---LYTASEDRT  199 (476)
T ss_pred             cceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc-ceeEEEEecCCCccce---EEEecCCce
Confidence            999999999999999999999999999864         235566666554 4799998888754322   799999999


Q ss_pred             EEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce----------------eeeeeeccccCc
Q 016257          226 LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME----------------INHWSKRLHLGT  289 (392)
Q Consensus       226 i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~~  289 (392)
                      +++||+..+..+..+.. +..+.+++.+|-++.+++|+.+|.|.+.++.+..                .... ..+| ..
T Consensus       200 ~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~-~~Gh-~~  276 (476)
T KOG0646|consen  200 IKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINV-LVGH-EN  276 (476)
T ss_pred             EEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeee-eccc-cC
Confidence            99999999988766553 6789999999999999999999999998875432                1111 2456 44


Q ss_pred             --ceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccc
Q 016257          290 --SIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKE  325 (392)
Q Consensus       290 --~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~  325 (392)
                        .|+|++.+-||..|++|+.||.++|||+...+-.+.
T Consensus       277 ~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt  314 (476)
T KOG0646|consen  277 ESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT  314 (476)
T ss_pred             CcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence              999999999999999999999999999987655443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=6.2e-25  Score=197.70  Aligned_cols=245  Identities=11%  Similarity=0.152  Sum_probs=203.3

Q ss_pred             CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCC-CCCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 016257           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (392)
Q Consensus        61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i~  139 (392)
                      .|...-+.++|.|+|++|++++.||.|++|+.......       ...+. +...|.+++-  ++.+|++++.+++|.+|
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-------P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y   81 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-------PETIDISGELVSSIAC--YSNHFLTGSEQNTVLRY   81 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-------CchhhccCceeEEEee--cccceEEeeccceEEEe
Confidence            57888999999999999999999999999998765311       11111 4455666655  45699999999999999


Q ss_pred             eCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEE
Q 016257          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (392)
Q Consensus       140 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (392)
                      .+.+++.-..+....-++.+++|+-+|+++|.|+.|-.|++.++.+......+..+ .++|.++.|+|.+..     +++
T Consensus        82 ~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-~apVl~l~~~p~~~f-----LAv  155 (933)
T KOG1274|consen   82 KFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-DAPVLQLSYDPKGNF-----LAV  155 (933)
T ss_pred             eCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-CCceeeeeEcCCCCE-----EEE
Confidence            99887765444455568999999999999999999999999999998888888766 558999999999997     899


Q ss_pred             eCCccEEEEEeCCCceeeeeeccc--------CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcce
Q 016257          220 RGDKALLAVYDISTWNKIGHKRLL--------RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI  291 (392)
Q Consensus       220 ~~~d~~i~v~d~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i  291 (392)
                      .+.||.|++||+.++.....+...        ...+..++|+|+|..++..+.|+.|++|+..+.+....+...+....+
T Consensus       156 ss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~  235 (933)
T KOG1274|consen  156 SSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKF  235 (933)
T ss_pred             EecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccce
Confidence            999999999999988765544322        345677999999888888888999999999999888777554435559


Q ss_pred             EEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257          292 ALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       292 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      ..+.|+|+|+|||+++.||.|.||+++++
T Consensus       236 ~~~~wsPnG~YiAAs~~~g~I~vWnv~t~  264 (933)
T KOG1274|consen  236 SDLQWSPNGKYIAASTLDGQILVWNVDTH  264 (933)
T ss_pred             EEEEEcCCCcEEeeeccCCcEEEEecccc
Confidence            99999999999999999999999999964

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.2e-25  Score=184.30  Aligned_cols=281  Identities=16%  Similarity=0.204  Sum_probs=216.2

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCC-EEEEEeCCCcEEEEeC
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHW  141 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~  141 (392)
                      .+.|+++.|+|....|++++.|++++||.+....... +....+    ...+|.+..|.|+|+ .+++++....++.||+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~-lqS~~l----~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl  287 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK-LQSIHL----EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL  287 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChh-heeeee----ccCccceeeecCCCceEEEecccceEEEEeec
Confidence            4689999999999999999999999999997654321 111111    246899999999999 8899999999999999


Q ss_pred             CCCceee--cccCCC-CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257          142 PSLRIIL--DEPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       142 ~~~~~~~--~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (392)
                      ++.+...  ...+.. ..+.....++++++|+..+..|.|.+....+++.+.++...  +.+..++|+.+++.     ++
T Consensus       288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie--G~v~~~~fsSdsk~-----l~  360 (514)
T KOG2055|consen  288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE--GVVSDFTFSSDSKE-----LL  360 (514)
T ss_pred             cccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec--cEEeeEEEecCCcE-----EE
Confidence            8876532  222222 25778889999999999999999999999999998888743  47999999999987     78


Q ss_pred             EeCCccEEEEEeCCCceeeeeecccCC-CcEEEEECCCCCEEEEEeCCCcEEEEecCC------ceeeeeeeccccCcce
Q 016257          219 QRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISLDGKYLAMGSKDGDICVVDVKK------MEINHWSKRLHLGTSI  291 (392)
Q Consensus       219 ~~~~d~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~~~i  291 (392)
                      .++.+|.|.+||++...++..+....+ .-++++.|+++.+||+|+..|.|.|||.++      .+++..+..  ....|
T Consensus       361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN--Ltt~I  438 (514)
T KOG2055|consen  361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN--LTTAI  438 (514)
T ss_pred             EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh--hheee
Confidence            888899999999999988877765432 346788889999999999999999999754      233333321  26789


Q ss_pred             EEEEEeeCCCeEEEEeC--CCeEEEEEeecCccccceeeee-----eee-eeeeeceEEEEeeecceeeeeccc
Q 016257          292 ALVEFCPTQRVVLTASK--EWGAMITKLTVPADWKEWQIYS-----LLL-ALFLASAVVFYIFFENSDSFWNFP  357 (392)
Q Consensus       292 ~~~~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~d~~i~~W~~~  357 (392)
                      +++.|++|+++|+.+|.  +..+++-.+.....++.|...-     ... .+...++.++.+.-++++.+|.+.
T Consensus       439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  439 TSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            99999999999888775  6789998887766666553221     111 112234566666678999999874

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.94  E-value=4.9e-25  Score=183.71  Aligned_cols=293  Identities=16%  Similarity=0.174  Sum_probs=213.4

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCC-CCeEEEEe
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCST   82 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-~~~l~~~~   82 (392)
                      .++|+|++|+|...+ .+|+.|+..|      .|-+|+++...+    ...-...+..|..+|.++.|+|. ...+++.+
T Consensus       186 ~~Rit~l~fHPt~~~-~lva~GdK~G------~VG~Wn~~~~~~----d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS  254 (498)
T KOG4328|consen  186 DRRITSLAFHPTENR-KLVAVGDKGG------QVGLWNFGTQEK----DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS  254 (498)
T ss_pred             ccceEEEEecccCcc-eEEEEccCCC------cEEEEecCCCCC----ccCceEEeccCCccccceEecCCChhheeeec
Confidence            578999999998765 6888888754      488999963222    12223557889999999999994 45888999


Q ss_pred             CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCce-eecccCCCCcEEEEE
Q 016257           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-ILDEPKAHKSVLDMD  161 (392)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~i~  161 (392)
                      .||+|+.-|++.......+...     ........+.|+.+...++.+..=|...+||.+++.. ...+.-|...|.+++
T Consensus       255 yDGtiR~~D~~~~i~e~v~s~~-----~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~  329 (498)
T KOG4328|consen  255 YDGTIRLQDFEGNISEEVLSLD-----TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVA  329 (498)
T ss_pred             cCceeeeeeecchhhHHHhhcC-----ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceee
Confidence            9999999999887532222111     1344677888988887888887778999999998765 444455666999999


Q ss_pred             ecCCC-CeEEEEcCCCcEEEEECCCCeeeEE---EecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC----C
Q 016257          162 FSLDS-EFLATTSTDGSARIWKTEDGVAWTF---LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS----T  233 (392)
Q Consensus       162 ~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~----~  233 (392)
                      ++|-. .+|++++.|++.+|||++.-.....   ....|...|.+..|||.+..     +++.+.|..|+|||..    .
T Consensus       330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-----l~TT~~D~~IRv~dss~~sa~  404 (498)
T KOG4328|consen  330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-----LLTTCQDNEIRVFDSSCISAK  404 (498)
T ss_pred             cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-----eEeeccCCceEEeeccccccc
Confidence            99954 5799999999999999986433321   12234558999999999887     7999999999999984    2


Q ss_pred             ceeeeeec---ccCCC--cEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEE-EEEeeCCCeEEEE-
Q 016257          234 WNKIGHKR---LLRKP--ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL-VEFCPTQRVVLTA-  306 (392)
Q Consensus       234 ~~~~~~~~---~~~~~--v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~-  306 (392)
                      ..+...+.   .+...  .....|.|+..++++|..-..|-|+|-..++.+..+.... ...|.+ ..|+|-+..+++| 
T Consensus       405 ~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~-~~tI~~vn~~HP~~~~~~aG~  483 (498)
T KOG4328|consen  405 DEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE-SSTIPSVNEFHPMRDTLAAGG  483 (498)
T ss_pred             CCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc-ccccccceeecccccceeccC
Confidence            22222221   11122  2346899999999999999999999999988766553332 334544 4799988855555 


Q ss_pred             eCCCeEEEEEee
Q 016257          307 SKEWGAMITKLT  318 (392)
Q Consensus       307 ~~dg~i~iw~~~  318 (392)
                      +..|.|.||.-+
T Consensus       484 ~s~Gki~vft~k  495 (498)
T KOG4328|consen  484 NSSGKIYVFTNK  495 (498)
T ss_pred             CccceEEEEecC
Confidence            556888887543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=2.6e-27  Score=207.57  Aligned_cols=236  Identities=18%  Similarity=0.271  Sum_probs=212.2

Q ss_pred             eeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEE
Q 016257           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (392)
Q Consensus        59 ~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  138 (392)
                      +..|...|.++..-..++.+++|+.|..+-+|.+........+       ..|..+|.++.|+++..+|++|+.+|+|++
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~-------~~hespIeSl~f~~~E~LlaagsasgtiK~   96 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL-------TGHESPIESLTFDTSERLLAAGSASGTIKV   96 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhee-------eccCCcceeeecCcchhhhcccccCCceee
Confidence            4568889999998778889999999999999998766544332       248899999999999999999999999999


Q ss_pred             EeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (392)
                      ||++..+.+..+.+|...+.++.|+|-+.+.+.++.|..+++||++...+.+.+..|. ..+..++|+|+|.+     ++
T Consensus        97 wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~-~vv~~l~lsP~Gr~-----v~  170 (825)
T KOG0267|consen   97 WDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT-RVVDVLRLSPDGRW-----VA  170 (825)
T ss_pred             eehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCc-ceeEEEeecCCCce-----ee
Confidence            9999999999999999999999999999999999999999999999888988888754 47999999999998     79


Q ss_pred             EeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEee
Q 016257          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (392)
Q Consensus       219 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  298 (392)
                      .+++|..+++||+..++....+..|...+..+.|+|..-+++.|+.|+++++||+++.+.+..... . ...|.+.+|+|
T Consensus       171 ~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~-~-~~~v~~~~fn~  248 (825)
T KOG0267|consen  171 SGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP-E-TDGVRSLAFNP  248 (825)
T ss_pred             ccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCC-c-cCCceeeeecC
Confidence            999999999999999999999999999999999999999999999999999999999988876633 3 67899999999


Q ss_pred             CCCeEEEEeCC
Q 016257          299 TQRVVLTASKE  309 (392)
Q Consensus       299 ~~~~l~~~~~d  309 (392)
                      ++..+++|..+
T Consensus       249 ~~~~~~~G~q~  259 (825)
T KOG0267|consen  249 DGKIVLSGEQI  259 (825)
T ss_pred             CceeeecCchh
Confidence            99999888766

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=2.5e-24  Score=188.09  Aligned_cols=333  Identities=13%  Similarity=0.123  Sum_probs=231.4

Q ss_pred             eeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC---eEEEEeCC
Q 016257            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD---DFVCSTTN   84 (392)
Q Consensus         8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~---~l~~~~~d   84 (392)
                      .|++..|+... .+++.|+.      +..+.++....+      .-.....+.||.+.|.+++|...+.   +||+++.|
T Consensus       149 LcL~~~~~~~~-~lla~Ggs------~~~v~~~s~~~d------~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD  215 (764)
T KOG1063|consen  149 LCLAALKNNKT-FLLACGGS------KFVVDLYSSSAD------SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQD  215 (764)
T ss_pred             HHHhhhccCCc-EEEEecCc------ceEEEEeccCCc------ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCc
Confidence            46777774444 66777666      444666655411      3345678999999999999987443   78899999


Q ss_pred             CeEEEEEEeCCccce---------------------eec---cccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEe
Q 016257           85 GGCKLFEVYGGATDI---------------------NLL---AKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (392)
Q Consensus        85 ~~i~iw~~~~~~~~~---------------------~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d  140 (392)
                      ..|+||.+.-.....                     .+.   ..+.-...|...|.++.|+|.+..|++++.|.++.+|.
T Consensus       216 ~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~  295 (764)
T KOG1063|consen  216 RYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWK  295 (764)
T ss_pred             eEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEe
Confidence            999999986443111                     000   00112246899999999999999999999999999998


Q ss_pred             CCCCc--e-----eecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee-e-EEEecCCCcceEEEEecCCCCc
Q 016257          141 WPSLR--I-----ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-W-TFLTRNSDEKIELCRFSKDGTK  211 (392)
Q Consensus       141 ~~~~~--~-----~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~~  211 (392)
                      ..+..  -     +..+.+......+..|+|+++.+++-+..|..++|..++... . .....+|-..|..++|+|.|.+
T Consensus       296 pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGef  375 (764)
T KOG1063|consen  296 PDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEF  375 (764)
T ss_pred             cCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCE
Confidence            76542  1     111222234688999999999999999999999998333211 1 1122334447999999999986


Q ss_pred             ceE-----------------------------------------EEEEEeCCccEEEEEeCCC-----------------
Q 016257          212 PFL-----------------------------------------FCTVQRGDKALLAVYDIST-----------------  233 (392)
Q Consensus       212 ~~~-----------------------------------------~~~~~~~~d~~i~v~d~~~-----------------  233 (392)
                      ++.                                         .-++++.+...+++|+...                 
T Consensus       376 lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~  455 (764)
T KOG1063|consen  376 LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGS  455 (764)
T ss_pred             EEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCc
Confidence            210                                         0012333334444444321                 


Q ss_pred             --------------------------c---------------------------------eeeeeecccCCCcEEEEECC
Q 016257          234 --------------------------W---------------------------------NKIGHKRLLRKPASVLSISL  254 (392)
Q Consensus       234 --------------------------~---------------------------------~~~~~~~~~~~~v~~~~~s~  254 (392)
                                                +                                 ..+..+.+|...|.+++.+|
T Consensus       456 ~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~  535 (764)
T KOG1063|consen  456 DELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP  535 (764)
T ss_pred             hhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC
Confidence                                      0                                 00223456778899999999


Q ss_pred             CCCEEEEEeCCC-----cEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCc--------
Q 016257          255 DGKYLAMGSKDG-----DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA--------  321 (392)
Q Consensus       255 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--------  321 (392)
                      +|+++|+++...     .|++|+..+....+.+ .+| .-.|+.++|||||++|++.+.|.++.+|......        
T Consensus       536 ~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L-~~H-sLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~  613 (764)
T KOG1063|consen  536 TGNLIASACKSSLKEHAVIRLWNTANWLQVQEL-EGH-SLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFAC  613 (764)
T ss_pred             CCCEEeehhhhCCccceEEEEEeccchhhhhee-ccc-ceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcc
Confidence            999999998653     4999999988777755 688 9999999999999999999999999999885331        


Q ss_pred             ----cccceeeeeeeeeeeeeceEEEEeeecceeeeecccccc
Q 016257          322 ----DWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVAR  360 (392)
Q Consensus       322 ----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~  360 (392)
                          ...+|...+.+..+.     .++++.|.+|.+|..+..+
T Consensus       614 ~k~HtRIIWdcsW~pde~~-----FaTaSRDK~VkVW~~~~~~  651 (764)
T KOG1063|consen  614 LKAHTRIIWDCSWSPDEKY-----FATASRDKKVKVWEEPDLR  651 (764)
T ss_pred             ccccceEEEEcccCcccce-----eEEecCCceEEEEeccCch
Confidence                112444444444443     5666779999999998773

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.8e-24  Score=194.79  Aligned_cols=273  Identities=19%  Similarity=0.211  Sum_probs=213.3

Q ss_pred             eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 016257            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (392)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~   86 (392)
                      .+.++|.|+++  .+++       .++++.|++|.-..+..    .|.   .+.-+...|.+++.  ++.+|++|+.+++
T Consensus        16 ~t~i~~d~~ge--fi~t-------cgsdg~ir~~~~~sd~e----~P~---ti~~~g~~v~~ia~--~s~~f~~~s~~~t   77 (933)
T KOG1274|consen   16 LTLICYDPDGE--FICT-------CGSDGDIRKWKTNSDEE----EPE---TIDISGELVSSIAC--YSNHFLTGSEQNT   77 (933)
T ss_pred             eEEEEEcCCCC--EEEE-------ecCCCceEEeecCCccc----CCc---hhhccCceeEEEee--cccceEEeeccce
Confidence            67789999986  2444       34567788887653311    111   12226778888876  4559999999999


Q ss_pred             EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCC
Q 016257           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS  166 (392)
Q Consensus        87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~  166 (392)
                      |.+|...+++....+..       ..-++++++|+-+|++++.|+.|-.|++.++.+......+.+|..+|.++.|+|.+
T Consensus        78 v~~y~fps~~~~~iL~R-------ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~  150 (933)
T KOG1274|consen   78 VLRYKFPSGEEDTILAR-------FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG  150 (933)
T ss_pred             EEEeeCCCCCccceeee-------eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCC
Confidence            99999988764322221       24578999999999999999999999999999988888899999999999999999


Q ss_pred             CeEEEEcCCCcEEEEECCCCeeeEEEecC-------CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeee
Q 016257          167 EFLATTSTDGSARIWKTEDGVAWTFLTRN-------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (392)
Q Consensus       167 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~  239 (392)
                      ++||+.+.||+|++||++++....++..-       ....+..++|+|++..     ++....|+.|++|+...+.....
T Consensus       151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-----la~~~~d~~Vkvy~r~~we~~f~  225 (933)
T KOG1274|consen  151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT-----LAVPPVDNTVKVYSRKGWELQFK  225 (933)
T ss_pred             CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe-----EEeeccCCeEEEEccCCceehee
Confidence            99999999999999999998877666431       1235678999999776     68888899999999999988766


Q ss_pred             ecc--cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEE
Q 016257          240 KRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMIT  315 (392)
Q Consensus       240 ~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  315 (392)
                      +..  +...+.+++|+|+|+|||+++.||.|.|||.++.+.     ... ...|.+++|.|+...+-.-...|...+|
T Consensus       226 Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~-~~~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  226 LRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-----HEF-KRAVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             ecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-----ccc-cceeEEEecCCCCCeeEEEeeccccccC
Confidence            653  334589999999999999999999999999998332     112 6789999999998866555444444433

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.1e-24  Score=167.61  Aligned_cols=232  Identities=13%  Similarity=0.133  Sum_probs=179.5

Q ss_pred             CCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC--CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCC
Q 016257           31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP  108 (392)
Q Consensus        31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~  108 (392)
                      .++|+.|+||....++.     ..+..+|.||+++|..++|-.  .|.+||+++.||.|.||.-++++-...     ...
T Consensus        29 csSD~tVkIf~v~~n~~-----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~-----~e~   98 (299)
T KOG1332|consen   29 CSSDGTVKIFEVRNNGQ-----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKA-----YEH   98 (299)
T ss_pred             ecCCccEEEEEEcCCCC-----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhh-----hhh
Confidence            45688899999986642     356678999999999999954  789999999999999999887753222     222


Q ss_pred             CCCCCCeEEEEecCC--CCEEEEEeCCCcEEEEeCCCC-c--eeecccCCCCcEEEEEecCC---C-----------CeE
Q 016257          109 LQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSL-R--IILDEPKAHKSVLDMDFSLD---S-----------EFL  169 (392)
Q Consensus       109 ~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~-~--~~~~~~~~~~~i~~i~~~~~---~-----------~~l  169 (392)
                      ..|...|++++|.|.  |-.|++++.||.|.|.+.++. .  .......|.-.|++++|.|.   |           +.|
T Consensus        99 ~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krl  178 (299)
T KOG1332|consen   99 AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRL  178 (299)
T ss_pred             hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccccee
Confidence            248899999999994  668999999999999998754 2  12233456568999999985   4           569


Q ss_pred             EEEcCCCcEEEEECCCCee--eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce---eeeeecccC
Q 016257          170 ATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---KIGHKRLLR  244 (392)
Q Consensus       170 ~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~  244 (392)
                      ++|+.|..|+||+..+++-  .+++..| ...|+.++|.|.-... ..++++++.||++.||-.+...   ....++...
T Consensus       179 vSgGcDn~VkiW~~~~~~w~~e~~l~~H-~dwVRDVAwaP~~gl~-~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~  256 (299)
T KOG1332|consen  179 VSGGCDNLVKIWKFDSDSWKLERTLEGH-KDWVRDVAWAPSVGLP-KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFP  256 (299)
T ss_pred             eccCCccceeeeecCCcchhhhhhhhhc-chhhhhhhhccccCCC-ceeeEEecCCCcEEEEEecCccCcccccccccCC
Confidence            9999999999999987632  2334444 5589999999986432 3348999999999999876321   122334456


Q ss_pred             CCcEEEEECCCCCEEEEEeCCCcEEEEecC
Q 016257          245 KPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (392)
Q Consensus       245 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  274 (392)
                      ..+..+.||+.|+.|++++.|+++.+|.-.
T Consensus       257 ~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  257 DVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            789999999999999999999999999654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.1e-23  Score=183.81  Aligned_cols=279  Identities=12%  Similarity=0.139  Sum_probs=218.6

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  142 (392)
                      ...|.+++|+.+.+.||.+-.+|.|-||++...-........     ...+.|.+++|++ +..|++.+.+|.|.-||+.
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-----~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~   98 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-----PEDRSIESLAWAE-GGRLFSSGLSGSITEWDLH   98 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec-----CCCCceeeEEEcc-CCeEEeecCCceEEEEecc
Confidence            678999999999999999999999999999886544333322     2467899999995 4477888889999999999


Q ss_pred             CCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec-CCCcceEEEEecCCCCcceEEEEEEeC
Q 016257          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRG  221 (392)
Q Consensus       143 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (392)
                      ++++........+.|.+++.+|.+..++.|+.||.+..++...++....... ...+.+.++.|+|++..     ++.|+
T Consensus        99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~-----i~~Gs  173 (691)
T KOG2048|consen   99 TLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK-----IAGGS  173 (691)
T ss_pred             cCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE-----EEecc
Confidence            9999988888888999999999999999999999888888877765544322 23468999999999998     89999


Q ss_pred             CccEEEEEeCCCceeeeee-----cc---cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEE
Q 016257          222 DKALLAVYDISTWNKIGHK-----RL---LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL  293 (392)
Q Consensus       222 ~d~~i~v~d~~~~~~~~~~-----~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~  293 (392)
                      .||.|++||..++..+...     ..   ...-|.++.+-.+ ..|++|..-|+|.+||...+.+.+.. ..| ...|.+
T Consensus       174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~-~~h-~adVl~  250 (691)
T KOG2048|consen  174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSH-SCH-DADVLA  250 (691)
T ss_pred             cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhh-hhh-hcceeE
Confidence            9999999999988776521     11   1223556666544 57899999999999999999988877 578 899999


Q ss_pred             EEEeeCCCeEEEEeCCCeEEEEEeecCccccceeee-------eeeeeeeeeceEEEEeeecceeeeeccc
Q 016257          294 VEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIY-------SLLLALFLASAVVFYIFFENSDSFWNFP  357 (392)
Q Consensus       294 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~d~~i~~W~~~  357 (392)
                      ++.++++.++++++.|+.|..+.......  .|-..       ............+++++.|..+.+=...
T Consensus       251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~--~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~  319 (691)
T KOG2048|consen  251 LAVADNEDRVFSAGVDPKIIQYSLTTNKS--EWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSR  319 (691)
T ss_pred             EEEcCCCCeEEEccCCCceEEEEecCCcc--ceeeeccccCCcccceeeeeecceEEecceeeEEEEcccc
Confidence            99999999999999999999988876543  13111       1222333344466777777776665443

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=5.6e-26  Score=209.15  Aligned_cols=301  Identities=18%  Similarity=0.198  Sum_probs=225.9

Q ss_pred             eeeecCCCCCcceeEEEeCCCCC--C--CCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCe----E
Q 016257            7 VTCGSWIKRPENVNLVVLGKSSR--A--SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD----F   78 (392)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~--~--~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~----l   78 (392)
                      --.++|+|+..  .+++.|...+  .  .+.+.++.+|.++.......  ......+. -....+.++|.+.|..    |
T Consensus         9 ta~~awSp~~~--~~laagt~aq~~D~sfst~~slEifeld~~~~~~d--lk~~~s~~-s~~rF~kL~W~~~g~~~~GlI   83 (1049)
T KOG0307|consen    9 TATFAWSPASP--PLLAAGTAAQQFDASFSTSASLEIFELDFSDESSD--LKPVGSLQ-SSNRFNKLAWGSYGSHSHGLI   83 (1049)
T ss_pred             cceEEecCCCc--hhhHHHhhhhccccccccccccceeeecccCcccc--cccccccc-ccccceeeeecccCCCcccee
Confidence            34579999884  3555554322  2  25688899999985543321  11111222 2467889999997765    8


Q ss_pred             EEEeCCCeEEEEEEeCC--ccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeeccc--CC
Q 016257           79 VCSTTNGGCKLFEVYGG--ATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEP--KA  153 (392)
Q Consensus        79 ~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~  153 (392)
                      |.|..||.|.+||...-  ........   ..-.|.+.|..+.|++. +++||+|+.||.|.|||+...+......  ..
T Consensus        84 aGG~edG~I~ly~p~~~~~~~~~~~la---~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~  160 (1049)
T KOG0307|consen   84 AGGLEDGNIVLYDPASIIANASEEVLA---TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAP  160 (1049)
T ss_pred             eccccCCceEEecchhhccCcchHHHh---hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCC
Confidence            88999999999998663  11111111   12248999999999995 5599999999999999998765544432  23


Q ss_pred             CCcEEEEEecCC-CCeEEEEcCCCcEEEEECCCCeeeEEEecCCC-cceEEEEecCCCCcceEEEEEEeCCc---cEEEE
Q 016257          154 HKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGDK---ALLAV  228 (392)
Q Consensus       154 ~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~d---~~i~v  228 (392)
                      .+.|.+++|+.. ...|++++.+|.+.|||++..+++-.+..+.. ..+..++|+|+....    ++++++|   -.|.+
T Consensus       161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq----l~~As~dd~~Pviql  236 (1049)
T KOG0307|consen  161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ----LLVASGDDSAPVIQL  236 (1049)
T ss_pred             cccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee----eeeecCCCCCceeEe
Confidence            357999999874 45688999999999999999888777765443 357899999998753    3444433   46999


Q ss_pred             EeCCCc-eeeeeecccCCCcEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCC-eEEE
Q 016257          229 YDISTW-NKIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLT  305 (392)
Q Consensus       229 ~d~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~  305 (392)
                      ||+|.. .+++.++.|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+.. . ...+..+.|.|... .+++
T Consensus       237 WDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-~-~nW~fdv~w~pr~P~~~A~  314 (1049)
T KOG0307|consen  237 WDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-Q-GNWCFDVQWCPRNPSVMAA  314 (1049)
T ss_pred             ecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-C-CcceeeeeecCCCcchhhh
Confidence            999864 3566778999999999999966 8899999999999999999999988754 3 78899999999877 8889


Q ss_pred             EeCCCeEEEEEeecCc
Q 016257          306 ASKEWGAMITKLTVPA  321 (392)
Q Consensus       306 ~~~dg~i~iw~~~~~~  321 (392)
                      ++-||.|.|+.+....
T Consensus       315 asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  315 ASFDGKISIYSLQGTD  330 (1049)
T ss_pred             heeccceeeeeeecCC
Confidence            9999999999998654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.9e-24  Score=171.15  Aligned_cols=288  Identities=12%  Similarity=0.175  Sum_probs=215.2

Q ss_pred             eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 016257            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (392)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~   86 (392)
                      ..|+.|++.+   .++|+|..      ++.+-||+++        +......+.+|..+|.+++||++|+.|++++.|..
T Consensus        26 a~~~~Fs~~G---~~lAvGc~------nG~vvI~D~~--------T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s   88 (405)
T KOG1273|consen   26 AECCQFSRWG---DYLAVGCA------NGRVVIYDFD--------TFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWS   88 (405)
T ss_pred             cceEEeccCc---ceeeeecc------CCcEEEEEcc--------ccchhhhhhccccceeEEEecCCCCEeeeecCCce
Confidence            6799999998   45776666      5558899988        33344568899999999999999999999999999


Q ss_pred             EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeecccCCCC----cEEEEE
Q 016257           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK----SVLDMD  161 (392)
Q Consensus        87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~i~~i~  161 (392)
                      |.+||+..+....++.        ..++|..+.|+|. .+..++.-.+..-.+-++...+...--....+    .-.+..
T Consensus        89 i~lwDl~~gs~l~rir--------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~  160 (405)
T KOG1273|consen   89 IKLWDLLKGSPLKRIR--------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGV  160 (405)
T ss_pred             eEEEeccCCCceeEEE--------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccc
Confidence            9999999888655543        3579999999994 33444433444455555544332211111111    123346


Q ss_pred             ecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce------
Q 016257          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN------  235 (392)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~------  235 (392)
                      |++.|+++++|...|.+.++|..+.+++..+.......|..+.++..|..     ++..+.|+.|+.|+++.-.      
T Consensus       161 fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~-----liiNtsDRvIR~ye~~di~~~~r~~  235 (405)
T KOG1273|consen  161 FDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRF-----LIINTSDRVIRTYEISDIDDEGRDG  235 (405)
T ss_pred             ccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcE-----EEEecCCceEEEEehhhhcccCccC
Confidence            88999999999999999999999999998887666457999999999997     7889999999999987311      


Q ss_pred             -e--eeeec--ccCCCcEEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC
Q 016257          236 -K--IGHKR--LLRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE  309 (392)
Q Consensus       236 -~--~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  309 (392)
                       +  .+.+.  .....-.+++||.+|.|++.++. ...++||.-..|.+++.+. +..+.....+.|+|-...+++- ..
T Consensus       236 e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh-G~kgE~l~DV~whp~rp~i~si-~s  313 (405)
T KOG1273|consen  236 EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH-GTKGEELLDVNWHPVRPIIASI-AS  313 (405)
T ss_pred             CcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec-CCchhheeecccccceeeeeec-cC
Confidence             1  11111  11234557899999999888774 4569999999999998874 4425778899999998888777 77


Q ss_pred             CeEEEEEeecCccccce
Q 016257          310 WGAMITKLTVPADWKEW  326 (392)
Q Consensus       310 g~i~iw~~~~~~~~~~~  326 (392)
                      |.+++|.......+..+
T Consensus       314 g~v~iw~~~~~enwsaf  330 (405)
T KOG1273|consen  314 GVVYIWAVVQVENWSAF  330 (405)
T ss_pred             CceEEEEeecccchhhc
Confidence            89999999877665544

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.94  E-value=1e-24  Score=188.92  Aligned_cols=294  Identities=14%  Similarity=0.127  Sum_probs=206.8

Q ss_pred             eeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeE
Q 016257            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGC   87 (392)
Q Consensus         8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i   87 (392)
                      +++.|++...+-.+++.+..      ++.|.+++.....  ..........+..|.+.|..+.|-|....|++++.|.++
T Consensus        53 f~~sFs~~~n~eHiLavadE------~G~i~l~dt~~~~--fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~  124 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADE------DGGIILFDTKSIV--FRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTI  124 (720)
T ss_pred             ccccccCCCCccceEEEecC------CCceeeecchhhh--cchhhhhhcccccccceeEeeccCCCceeEEEccCCcee
Confidence            45778876554456776665      4446666544222  211222223456799999999999966689999999999


Q ss_pred             EEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCce--------------------
Q 016257           88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRI--------------------  146 (392)
Q Consensus        88 ~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~--------------------  146 (392)
                      ++||++..+....-     ..++|.+.|.+++|.| |...|++|+.||.|.|||++-...                    
T Consensus       125 r~Wdvk~s~l~G~~-----~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp  199 (720)
T KOG0321|consen  125 RPWDVKTSRLVGGR-----LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP  199 (720)
T ss_pred             eeeeeccceeecce-----eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence            99999988754331     2346899999999999 566889999999999999853220                    


Q ss_pred             -------eecccCCCCcEEE---EEecCCCCeEEEEcC-CCcEEEEECCCCeeeEEEe--------cC--CCcceEEEEe
Q 016257          147 -------ILDEPKAHKSVLD---MDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLT--------RN--SDEKIELCRF  205 (392)
Q Consensus       147 -------~~~~~~~~~~i~~---i~~~~~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~--------~~--~~~~v~~~~~  205 (392)
                             +.....+...|.+   +.+..|...||+++. |+.|+|||++.........        .+  ....+.++..
T Consensus       200 skp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l  279 (720)
T KOG0321|consen  200 SKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL  279 (720)
T ss_pred             CchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe
Confidence                   0001122234544   556678888999887 9999999999765433221        11  0123566667


Q ss_pred             cCCCCcceEEEEEEeCCccEEEEEeCCCcee--eeeecccCCC--cEEEEECCCCCEEEEEeCCCcEEEEecCCceeeee
Q 016257          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRLLRKP--ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW  281 (392)
Q Consensus       206 ~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  281 (392)
                      ...|.+     +++.+.|+.|+.|++.+...  +..+.++...  -..-..+|++.++++|+.|...++|.+.+.+....
T Consensus       280 DssGt~-----L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~  354 (720)
T KOG0321|consen  280 DSSGTY-----LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA  354 (720)
T ss_pred             cCCCCe-----EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh
Confidence            777787     56666699999999986432  2333322111  11235689999999999999999999999887777


Q ss_pred             eeccccCcceEEEEEeeCCC-eEEEEeCCCeEEEEEeecC
Q 016257          282 SKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       282 ~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~  320 (392)
                      +..+| ...|++++|.|... -++++++|..+++|++...
T Consensus       355 ~l~Gh-t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  355 LLLGH-TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             hhhCc-ceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            77899 99999999988533 4777799999999999643

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=3.3e-24  Score=169.36  Aligned_cols=212  Identities=16%  Similarity=0.176  Sum_probs=171.9

Q ss_pred             eCCCCCeeEEEEcC-CCCeEEEEeCCCeEEEEEEeCCcc--ceeecc------ccCCCCCCCCCeEEEEecC-CCCEEEE
Q 016257           60 DESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGAT--DINLLA------KKMPPLQDAGPQKCLSFSV-DGSRFAA  129 (392)
Q Consensus        60 ~~h~~~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~------~~~~~~~~~~~v~~~~~s~-~~~~l~~  129 (392)
                      .-|.+.|+++...+ .|+++++|+.||.|.+||+++...  ...+..      .......|.-.|..+.|-| |.-.+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            45889999999988 789999999999999999986541  111111      1122334777899999999 6678999


Q ss_pred             EeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCC---CCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEec
Q 016257          130 GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD---SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS  206 (392)
Q Consensus       130 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~---~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~  206 (392)
                      ++.|.++++||..+.+....+ ...+.|++-+++|-   ..++|+|..|-+|++.|+.+|...+++.+|.+ .|.++.|+
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-~vlaV~Ws  197 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-GVLAVEWS  197 (397)
T ss_pred             ccccceEEEeecccceeeEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-ceEEEEec
Confidence            999999999999988776544 44567898899983   45788888999999999999999999998766 69999999


Q ss_pred             CCCCcceEEEEEEeCCccEEEEEeCCCc-eee--------------eeecccCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 016257          207 KDGTKPFLFCTVQRGDKALLAVYDISTW-NKI--------------GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVV  271 (392)
Q Consensus       207 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~-~~~--------------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  271 (392)
                      |...++    +++++.||.|++||++.. .+.              +.-..|.+.+..++|+.++.++++.+.|.++++|
T Consensus       198 p~~e~v----LatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w  273 (397)
T KOG4283|consen  198 PSSEWV----LATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW  273 (397)
T ss_pred             cCceeE----EEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence            998863    799999999999999854 121              1123456789999999999999999999999999


Q ss_pred             ecCCce
Q 016257          272 DVKKME  277 (392)
Q Consensus       272 d~~~~~  277 (392)
                      +..+|+
T Consensus       274 n~~~G~  279 (397)
T KOG4283|consen  274 NMESGR  279 (397)
T ss_pred             ecccCc
Confidence            998875

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.94  E-value=1.1e-23  Score=166.15  Aligned_cols=298  Identities=11%  Similarity=0.126  Sum_probs=214.3

Q ss_pred             CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC-----e
Q 016257            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-----D   77 (392)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-----~   77 (392)
                      ...+++++.|+.....-.-++.|+-.  ....|+|+|..++.++..+.....     -.|.-+++.+.|.|+..     +
T Consensus        43 ap~~lya~~Ws~~~~~~~rla~gS~~--Ee~~Nkvqiv~ld~~s~e~~~~a~-----fd~~YP~tK~~wiPd~~g~~pdl  115 (364)
T KOG0290|consen   43 APWPLYAMNWSVRPDKKFRLAVGSFI--EEYNNKVQIVQLDEDSGELVEDAN-----FDHPYPVTKLMWIPDSKGVYPDL  115 (364)
T ss_pred             CCCceeeeccccCCCcceeEEEeeec--cccCCeeEEEEEccCCCceeccCC-----CCCCCCccceEecCCccccCcch
Confidence            35689999999644332457777764  346899999999977655533222     35889999999999763     4


Q ss_pred             EEEEeCCCeEEEEEEeCCccce--eeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCce---eeccc
Q 016257           78 FVCSTTNGGCKLFEVYGGATDI--NLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRI---ILDEP  151 (392)
Q Consensus        78 l~~~~~d~~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~  151 (392)
                      ||+ +.|- +++|.+...+...  ..........++..++++..|+. |.++|.+.+-|-+..|||++++..   ..++.
T Consensus       116 LAT-s~D~-LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI  193 (364)
T KOG0290|consen  116 LAT-SSDF-LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI  193 (364)
T ss_pred             hhc-ccCe-EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE
Confidence            555 4444 9999997533211  11111222334667999999998 888999999999999999998633   45667


Q ss_pred             CCCCcEEEEEecCCC-CeEEEEcCCCcEEEEECCCCeeeEEEec-CC-CcceEEEEecCCCCcceEEEEEEeCCccEEEE
Q 016257          152 KAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTR-NS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAV  228 (392)
Q Consensus       152 ~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v  228 (392)
                      .|.++|.+++|...+ +.+|+.+.||.+++||++..+.-..+.. +. ..+...++|++..... +  ...+-....|.+
T Consensus       194 AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpny-m--ATf~~dS~~V~i  270 (364)
T KOG0290|consen  194 AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNY-M--ATFAMDSNKVVI  270 (364)
T ss_pred             ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchH-H--hhhhcCCceEEE
Confidence            888899999999855 5789999999999999997665444432 22 4578889999877652 1  122334567999


Q ss_pred             EeCCCc-eeeeeecccCCCcEEEEECCC-CCEEEEEeCCCcEEEEecCCcee-----eeeeeccccCcceEEEEEeeC-C
Q 016257          229 YDISTW-NKIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEI-----NHWSKRLHLGTSIALVEFCPT-Q  300 (392)
Q Consensus       229 ~d~~~~-~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~i~~~~~s~~-~  300 (392)
                      .|+|.. .++..++.|...|+.++|.|. ...|++++.|..+.|||+.....     ...... . ++.|+.+.|++. +
T Consensus       271 LDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a-~~EVNqi~Ws~~~~  348 (364)
T KOG0290|consen  271 LDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-A-GGEVNQIQWSSSQP  348 (364)
T ss_pred             EEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-c-cceeeeeeecccCC
Confidence            999864 567889999999999999996 57899999999999999976432     111111 2 679999999974 4


Q ss_pred             CeEEEEeCCCeEEEE
Q 016257          301 RVVLTASKEWGAMIT  315 (392)
Q Consensus       301 ~~l~~~~~dg~i~iw  315 (392)
                      .+++.+.. +++.+.
T Consensus       349 Dwiai~~~-kkleiL  362 (364)
T KOG0290|consen  349 DWIAICFG-KKLEIL  362 (364)
T ss_pred             CEEEEEec-CeeeEE
Confidence            56766654 455543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=1.5e-24  Score=186.48  Aligned_cols=285  Identities=16%  Similarity=0.157  Sum_probs=213.7

Q ss_pred             ceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCC--EEEEEe
Q 016257           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS--RFAAGG  131 (392)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~  131 (392)
                      .+...+.||++.|.++...|.|.+|++|+.||+|+||.+.++.++.....        .+.|.|++|+|.+.  .||++-
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~--------d~~I~~vaw~P~~~~~vLAvA~  462 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF--------DSEIRSVAWNPLSDLCVLAVAV  462 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee--------cceeEEEEecCCCCceeEEEEe
Confidence            35667899999999999999999999999999999999999998777653        45899999999665  344443


Q ss_pred             CCCcEEEEeCCCCc-------------------------------------eeecccCCCCcEEEEEecCCCCeEEEEcC
Q 016257          132 VDGHLRIMHWPSLR-------------------------------------IILDEPKAHKSVLDMDFSLDSEFLATTST  174 (392)
Q Consensus       132 ~dg~i~i~d~~~~~-------------------------------------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~  174 (392)
                      . ..+.|.+..-|.                                     -+.....|...|..+.|+..|.+|++...
T Consensus       463 ~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~  541 (733)
T KOG0650|consen  463 G-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP  541 (733)
T ss_pred             c-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence            2 234444321110                                     01122345568999999999999998765


Q ss_pred             C---CcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEE
Q 016257          175 D---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLS  251 (392)
Q Consensus       175 d---~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~  251 (392)
                      +   ..|.|.++...+...-|... .+.+.++.|+|...+     ++.++ ...|++||+..+..++.+......|..++
T Consensus       542 ~~~~~~VliHQLSK~~sQ~PF~ks-kG~vq~v~FHPs~p~-----lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~ms  614 (733)
T KOG0650|consen  542 DSGNKSVLIHQLSKRKSQSPFRKS-KGLVQRVKFHPSKPY-----LFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMS  614 (733)
T ss_pred             CCCcceEEEEecccccccCchhhc-CCceeEEEecCCCce-----EEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeee
Confidence            4   56899999876665555433 347999999999886     33333 56799999999888888877788999999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccc-------
Q 016257          252 ISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWK-------  324 (392)
Q Consensus       252 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~-------  324 (392)
                      ++|.|..|+.|+.|+++..||+.-..........| ...+++++|++.-.++++|+.||.+.|+.-..-..+-       
T Consensus       615 ihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H-~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVP  693 (733)
T KOG0650|consen  615 IHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH-EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVP  693 (733)
T ss_pred             ecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh-hhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEe
Confidence            99999999999999999999998765444444678 9999999999999999999999999998544222210       


Q ss_pred             -----cee----eeeeeeeeeeeceEEEEeeecceeeeec
Q 016257          325 -----EWQ----IYSLLLALFLASAVVFYIFFENSDSFWN  355 (392)
Q Consensus       325 -----~~~----~~~~~~~~~~~~~~~~~~~~d~~i~~W~  355 (392)
                           ...    +............-+++++.|++|++|.
T Consensus       694 lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  694 LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             eeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence                 000    0011111223456789999999999984

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=1.1e-23  Score=166.49  Aligned_cols=290  Identities=15%  Similarity=0.172  Sum_probs=215.6

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCc----cccCCce---EEEeeCCCCCeeEEEEcC-CC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS----VYTSPLV---TYVFDESEGDPMTIAVNP-SG   75 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~----~~~~~~~---~~~~~~h~~~v~~~~~sp-~~   75 (392)
                      +|.|.++...+...+  ++..|+      +++.|.+|+++..+..    +.....+   ...-.+|.-.|.++.|-| |.
T Consensus        43 gGsvNsL~id~tegr--ymlSGg------adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt  114 (397)
T KOG4283|consen   43 GGSVNSLQIDLTEGR--YMLSGG------ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT  114 (397)
T ss_pred             CCccceeeeccccce--EEeecC------CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence            467777877775544  455444      4777999999744311    1111111   122356888999999999 55


Q ss_pred             CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC---CCEEEEEeCCCcEEEEeCCCCceeecccC
Q 016257           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (392)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  152 (392)
                      -.+.+++.|.+++|||..+.+....+.        -.+.|.+-++||-   -.++|+|..+-.|++.|+.+|.....+.+
T Consensus       115 GmFtssSFDhtlKVWDtnTlQ~a~~F~--------me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG  186 (397)
T KOG4283|consen  115 GMFTSSSFDHTLKVWDTNTLQEAVDFK--------MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG  186 (397)
T ss_pred             ceeecccccceEEEeecccceeeEEee--------cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc
Confidence            588889999999999999887655543        3457888888883   34788888899999999999999999999


Q ss_pred             CCCcEEEEEecCCCCe-EEEEcCCCcEEEEECCCC-eeeEEEec-------------CCCcceEEEEecCCCCcceEEEE
Q 016257          153 AHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDG-VAWTFLTR-------------NSDEKIELCRFSKDGTKPFLFCT  217 (392)
Q Consensus       153 ~~~~i~~i~~~~~~~~-l~~~~~d~~i~vwd~~~~-~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~~~~  217 (392)
                      |.+.|.++.|+|...+ |++|+.||.|++||++.. .+...+..             .+.+.+..++|+.++.+     +
T Consensus       187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-----l  261 (397)
T KOG4283|consen  187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-----L  261 (397)
T ss_pred             ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh-----h
Confidence            9999999999998776 778999999999999864 33333322             23457899999999998     7


Q ss_pred             EEeCCccEEEEEeCCCceeeeeecc---cC----CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcc
Q 016257          218 VQRGDKALLAVYDISTWNKIGHKRL---LR----KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS  290 (392)
Q Consensus       218 ~~~~~d~~i~v~d~~~~~~~~~~~~---~~----~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  290 (392)
                      ++.+.|..+++|+..+++......+   +.    -.+. +. +-+...++.--.++.+.++++-++..++.+ ..| ...
T Consensus       262 ~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l-~~h-~k~  337 (397)
T KOG4283|consen  262 ASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL-STH-LKR  337 (397)
T ss_pred             hhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEee-ecc-cce
Confidence            9999999999999988764211111   11    1111 22 233344444445688999999999988877 578 889


Q ss_pred             eEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          291 IALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       291 i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      |.+.++.|+-+...+|..|+.|..|-..
T Consensus       338 i~c~~~~~~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  338 INCAAYRPDFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             eeEEeecCchhhhhccccCCcccccccc
Confidence            9999999999999999999999999774

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2e-24  Score=179.47  Aligned_cols=289  Identities=12%  Similarity=0.143  Sum_probs=208.1

Q ss_pred             eEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC-------CCCeEEEEeCCCeEEEEEE
Q 016257           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-------SGDDFVCSTTNGGCKLFEV   92 (392)
Q Consensus        20 ~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-------~~~~l~~~~~d~~i~iw~~   92 (392)
                      .+++.+...   .-...+.+|.++.....+..-  .-..+   .....|++|..       .|+++|.|+.+..|.|||+
T Consensus       138 nlIl~ar~e---ddvs~LEvYVyn~~e~nlYvH--HD~il---pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDL  209 (463)
T KOG0270|consen  138 NLILCARNE---DDVSYLEVYVYNEEEENLYVH--HDFIL---PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDL  209 (463)
T ss_pred             cEEEEeecc---CCceEEEEEEEcCCCcceeEe--cceec---cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEecc
Confidence            355555442   235678889888665333110  00001   23556777743       3679999999999999998


Q ss_pred             eCCccceee--c------------cccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeecccCCCCcE
Q 016257           93 YGGATDINL--L------------AKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV  157 (392)
Q Consensus        93 ~~~~~~~~~--~------------~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i  157 (392)
                      .-.......  +            .+......|...|.+++|+.+ .+.||+|+.|.+|.+||+.++++...+..|.+.|
T Consensus       210 DI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~V  289 (463)
T KOG0270|consen  210 DIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKV  289 (463)
T ss_pred             ccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCce
Confidence            643321110  0            011112347788889999884 4578999999999999999999998887777899


Q ss_pred             EEEEecC-CCCeEEEEcCCCcEEEEECCCCeee-EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc-
Q 016257          158 LDMDFSL-DSEFLATTSTDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-  234 (392)
Q Consensus       158 ~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~-  234 (392)
                      .++.|+| ....|++|+.|+++.+.|.|..... ..+.  ..+.|..++|.|.....    ++.+..||+++-+|+|.. 
T Consensus       290 q~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--~~g~VEkv~w~~~se~~----f~~~tddG~v~~~D~R~~~  363 (463)
T KOG0270|consen  290 QTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--FDGEVEKVAWDPHSENS----FFVSTDDGTVYYFDIRNPG  363 (463)
T ss_pred             eEEEecCCCceEEEeccccceEEeeeccCccccCceEE--eccceEEEEecCCCcee----EEEecCCceEEeeecCCCC
Confidence            9999999 5578999999999999999953222 2232  34469999999988763    577889999999999976 


Q ss_pred             eeeeeecccCCCcEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCC-eEEEEeCCCeE
Q 016257          235 NKIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGA  312 (392)
Q Consensus       235 ~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i  312 (392)
                      +++.+++.|..+|.++++++.- .++++++.|+.|++|++..........+...-+...|.++.|+-. +++.|+..+.+
T Consensus       364 ~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~  443 (463)
T KOG0270|consen  364 KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVL  443 (463)
T ss_pred             CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceE
Confidence            8889999999999999999854 678999999999999987544322211111134467777888765 67778888889


Q ss_pred             EEEEeecCcc
Q 016257          313 MITKLTVPAD  322 (392)
Q Consensus       313 ~iw~~~~~~~  322 (392)
                      ++|++.....
T Consensus       444 ~vwd~~~~~~  453 (463)
T KOG0270|consen  444 RVWDIFTNSP  453 (463)
T ss_pred             EEeecccChh
Confidence            9999976543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.93  E-value=2.7e-24  Score=181.16  Aligned_cols=267  Identities=18%  Similarity=0.242  Sum_probs=206.3

Q ss_pred             eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 016257            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (392)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~   86 (392)
                      +.++.|+..+   .+++ .+.    +-+..+.+|.-+.....+   +... .+.+  +.-.|++......++++|+..+.
T Consensus        37 ~~s~~w~~~n---~lvv-as~----~gdk~~~~~~K~g~~~~V---p~~~-k~~g--d~~~Cv~~~s~S~y~~sgG~~~~  102 (673)
T KOG4378|consen   37 DFSFNWQRRN---FLVV-ASM----AGDKVMRIKEKDGKTPEV---PRVR-KLTG--DNAFCVACASQSLYEISGGQSGC  102 (673)
T ss_pred             ceeeeccccc---eEEE-eec----CCceeEEEecccCCCCcc---ceee-cccc--chHHHHhhhhcceeeeccCcCce
Confidence            8899999875   2333 222    125667777655443222   2221 1222  24445555555589999999999


Q ss_pred             EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCC-cEEEEEecCC
Q 016257           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLD  165 (392)
Q Consensus        87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~i~~~~~  165 (392)
                      |+|||++... ..++..      .|...|+++.++....+||+++..|.|.|..+.++.....+....+ .|.-+.|+|.
T Consensus       103 Vkiwdl~~kl-~hr~lk------dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~s  175 (673)
T KOG4378|consen  103 VKIWDLRAKL-IHRFLK------DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPS  175 (673)
T ss_pred             eeehhhHHHH-Hhhhcc------CCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccc
Confidence            9999998443 322222      3778999999999999999999999999999998877655554434 5778999997


Q ss_pred             CCe-EEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC
Q 016257          166 SEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR  244 (392)
Q Consensus       166 ~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~  244 (392)
                      .+. |.+++.+|.|.+||+....++..+...|..+...++|+|....+    +++-+.|..|.+||.+..+....+. ..
T Consensus       176 kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l----~vsVG~Dkki~~yD~~s~~s~~~l~-y~  250 (673)
T KOG4378|consen  176 KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL----LVSVGYDKKINIYDIRSQASTDRLT-YS  250 (673)
T ss_pred             cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce----EEEecccceEEEeecccccccceee-ec
Confidence            765 56788999999999999899888888888899999999998863    6888999999999999766654443 36


Q ss_pred             CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCC
Q 016257          245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (392)
Q Consensus       245 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  300 (392)
                      .+.+.++|+++|.+|+.|+..|.|..||++..+.+......| ...|++++|-|.-
T Consensus       251 ~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah-~~sVt~vafq~s~  305 (673)
T KOG4378|consen  251 HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH-DASVTRVAFQPSP  305 (673)
T ss_pred             CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec-ccceeEEEeeecc
Confidence            789999999999999999999999999999887666666788 8889999998764

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.93  E-value=3.3e-24  Score=178.78  Aligned_cols=292  Identities=12%  Similarity=0.024  Sum_probs=208.5

Q ss_pred             EeeCCCCCeeEEEEcCCC--CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCC
Q 016257           58 VFDESEGDPMTIAVNPSG--DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDG  134 (392)
Q Consensus        58 ~~~~h~~~v~~~~~sp~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg  134 (392)
                      ..+-+.+.|++++|+|..  +.+|+|...|+|-+||+.+.+....   .......|..+|.++.|+| +...+++.+.||
T Consensus       181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d---~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD---GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccC---ceEEeccCCccccceEecCCChhheeeeccCc
Confidence            455678999999999954  4788999999999999963332111   1111224889999999999 667899999999


Q ss_pred             cEEEEeCCCCceeecccC--CCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee-eEEEecCCCcceEEEEecCCCCc
Q 016257          135 HLRIMHWPSLRIILDEPK--AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTK  211 (392)
Q Consensus       135 ~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~  211 (392)
                      +|++-|++....-..+..  ....+.++.|+.+...++.+..=|...+||+++++. ...+..|.. .|..++++|-..+
T Consensus       258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP~~p~  336 (498)
T KOG4328|consen  258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK-KITSVALNPVCPW  336 (498)
T ss_pred             eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc-ccceeecCCCCch
Confidence            999999987654322222  334688899999888888888778999999998765 344444444 8999999999887


Q ss_pred             ceEEEEEEeCCccEEEEEeCCCceee----eeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecC----Cceeeeeee
Q 016257          212 PFLFCTVQRGDKALLAVYDISTWNKI----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK----KMEINHWSK  283 (392)
Q Consensus       212 ~~~~~~~~~~~d~~i~v~d~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~  283 (392)
                      .    +++++.|++.+|||++.....    .....|...|.+..|||.+-.|++.+.|..|+|||..    ..+....+.
T Consensus       337 ~----laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~  412 (498)
T KOG4328|consen  337 F----LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP  412 (498)
T ss_pred             h----eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee
Confidence            3    799999999999999864332    3445688899999999998889999999999999984    333334443


Q ss_pred             cccc---CcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccc-----eeeeeeeeeeeeeceEEEEee-ecceeeee
Q 016257          284 RLHL---GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKE-----WQIYSLLLALFLASAVVFYIF-FENSDSFW  354 (392)
Q Consensus       284 ~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~d~~i~~W  354 (392)
                      ..+.   --......|.|+..++++|-.-..|-|++-+.++-...     .........+......+++++ .-|.|++|
T Consensus       413 Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf  492 (498)
T KOG4328|consen  413 HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF  492 (498)
T ss_pred             ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence            2221   12345678999999999999988999998775542111     111122222222222234433 56778888


Q ss_pred             ccc
Q 016257          355 NFP  357 (392)
Q Consensus       355 ~~~  357 (392)
                      .-.
T Consensus       493 t~k  495 (498)
T KOG4328|consen  493 TNK  495 (498)
T ss_pred             ecC
Confidence            643

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=1.1e-22  Score=176.56  Aligned_cols=271  Identities=11%  Similarity=0.095  Sum_probs=187.1

Q ss_pred             CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEE-EEEeCCCcEEEEeCCCCceeecccCCC
Q 016257           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIILDEPKAH  154 (392)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~  154 (392)
                      +.+++++.|+.+++||+.+++....+.        ....+.+++|+|+++.+ ++++.++.|++||..+++....+..+ 
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~--------~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-   72 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFP--------VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-   72 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEE--------CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC-
Confidence            567888999999999998776544332        12346789999999876 56677899999999988876555443 


Q ss_pred             CcEEEEEecCCCCeEEEE-cCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCc-cEEEEEeCC
Q 016257          155 KSVLDMDFSLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDIS  232 (392)
Q Consensus       155 ~~i~~i~~~~~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d-~~i~v~d~~  232 (392)
                      ..+..++|+|+++.++++ +.++.+++||+++.+.+..+..+.  .+..++|+|++..     ++++..+ ..+.+||.+
T Consensus        73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~-----l~~~~~~~~~~~~~d~~  145 (300)
T TIGR03866        73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGV--EPEGMAVSPDGKI-----VVNTSETTNMAHFIDTK  145 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC--CcceEEECCCCCE-----EEEEecCCCeEEEEeCC
Confidence            335678999999877654 568999999999888777665332  4688999999986     4555544 467788998


Q ss_pred             CceeeeeecccCCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCceeeeeeecc----c-cCcceEEEEEeeCCCeEEE-
Q 016257          233 TWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRL----H-LGTSIALVEFCPTQRVVLT-  305 (392)
Q Consensus       233 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~----~-~~~~i~~~~~s~~~~~l~~-  305 (392)
                      +++....... ......++|+|++++|++++ .++.|++||+++++....+...    + .......++|+|++++++. 
T Consensus       146 ~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~  224 (300)
T TIGR03866       146 TYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA  224 (300)
T ss_pred             CCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence            8776544332 34567899999999886554 6899999999998876544211    1 0112456889999997554 


Q ss_pred             EeCCCeEEEEEeecCccccceeeeeeeeee--eeeceEEEEe-eecceeeeeccccccccc
Q 016257          306 ASKEWGAMITKLTVPADWKEWQIYSLLLAL--FLASAVVFYI-FFENSDSFWNFPVARNQH  363 (392)
Q Consensus       306 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~d~~i~~W~~~~~~~~~  363 (392)
                      .+.++.+.+|++...+..........+...  ......++++ ..++.|++||+..++.+.
T Consensus       225 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~  285 (300)
T TIGR03866       225 LGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIK  285 (300)
T ss_pred             cCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence            455678999998754332211111111111  1122344444 358999999999877543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.93  E-value=6.7e-24  Score=169.98  Aligned_cols=291  Identities=13%  Similarity=0.131  Sum_probs=205.1

Q ss_pred             CCceeeeecCCCC--CcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEe-eCCCCCeeEEEEcCC----C
Q 016257            3 GGGTVTCGSWIKR--PENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-DESEGDPMTIAVNPS----G   75 (392)
Q Consensus         3 ~~~~v~~~~w~~~--~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~----~   75 (392)
                      .+.||+.++|++-  -....++++.|+.       .+.+|+...++.    ...+.... ..|.+..+.++|+-+    .
T Consensus        37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~-------rvtiy~c~~d~~----ir~lq~y~D~d~~Esfytcsw~yd~~~~~  105 (385)
T KOG1034|consen   37 HNKPIFGVAFNSFLGCDEPQVFATVGGN-------RVTIYECPGDGG----IRLLQSYADEDHDESFYTCSWSYDSNTGN  105 (385)
T ss_pred             CCCccceeeeehhcCCCCCceEEEeCCc-------EEEEEEECCccc----eeeeeeccCCCCCcceEEEEEEecCCCCC
Confidence            3578999999961  1112345544443       366888875541    11111222 247888899999753    3


Q ss_pred             CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeecc---c
Q 016257           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDE---P  151 (392)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~---~  151 (392)
                      .++|+|+.-|.|+|.|+.+++....+.       .|...|+.+.+.|+ .+++++++.|..|++|++++..++..+   .
T Consensus       106 p~la~~G~~GvIrVid~~~~~~~~~~~-------ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~e  178 (385)
T KOG1034|consen  106 PFLAAGGYLGVIRVIDVVSGQCSKNYR-------GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVE  178 (385)
T ss_pred             eeEEeecceeEEEEEecchhhhcccee-------ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccc
Confidence            488999999999999999888655544       37889999999994 578999999999999999999987665   4


Q ss_pred             CCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe---------------------------cCCCcceEEEE
Q 016257          152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT---------------------------RNSDEKIELCR  204 (392)
Q Consensus       152 ~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~---------------------------~~~~~~v~~~~  204 (392)
                      +|.+.|.++.|++++.+|++++.|.++++|++...+....++                           .-|...|.|+.
T Consensus       179 gHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr  258 (385)
T KOG1034|consen  179 GHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR  258 (385)
T ss_pred             cccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH
Confidence            566799999999999999999999999999997432111110                           01122333333


Q ss_pred             ecCCCCcceEEEEEEeCCccEEEEEeCC-Ccee-------------eeeecccCCCcEEE--EECCCCCEEEEEeCCCcE
Q 016257          205 FSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNK-------------IGHKRLLRKPASVL--SISLDGKYLAMGSKDGDI  268 (392)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~d~~i~v~d~~-~~~~-------------~~~~~~~~~~v~~~--~~s~~~~~l~~~~~dg~i  268 (392)
                      |--  ..     +++-+.++.|..|..- -.+.             +..+......+.-+  +|.|-++.||.|...|+|
T Consensus       259 w~g--d~-----ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v  331 (385)
T KOG1034|consen  259 WFG--DF-----ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKV  331 (385)
T ss_pred             HHh--hh-----eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcE
Confidence            332  22     5777778899999872 1111             22333334455555  445668999999999999


Q ss_pred             EEEecCCceeeeeeeccc--cCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          269 CVVDVKKMEINHWSKRLH--LGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       269 ~iwd~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      ++||++..+........|  ....|.+.+|+.||..|+..++|++|.-||..
T Consensus       332 ~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  332 YVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            999999876532211111  26789999999999999999999999888753

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=1.1e-23  Score=171.65  Aligned_cols=256  Identities=14%  Similarity=0.184  Sum_probs=186.5

Q ss_pred             CCceEEEeeCCCCCeeEEEEcCCCC--eEEEEeCCCeEEEEEEeCCcc-------ceee--ccccCCCCCCCCCeEEEEe
Q 016257           52 SPLVTYVFDESEGDPMTIAVNPSGD--DFVCSTTNGGCKLFEVYGGAT-------DINL--LAKKMPPLQDAGPQKCLSF  120 (392)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~sp~~~--~l~~~~~d~~i~iw~~~~~~~-------~~~~--~~~~~~~~~~~~~v~~~~~  120 (392)
                      .|........|.+.++.+.-++-++  +.++=+..|.|+||++...-.       ....  .........|...=+.++|
T Consensus       140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdW  219 (440)
T KOG0302|consen  140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDW  219 (440)
T ss_pred             cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeec
Confidence            3566666678899999999888665  455557889999999854321       0000  0001112235666789999


Q ss_pred             cC-CCCEEEEEeCCCcEEEEeCCCCceee---cccCCCCcEEEEEecCC-CCeEEEEcCCCcEEEEECCCCee-eEEEec
Q 016257          121 SV-DGSRFAAGGVDGHLRIMHWPSLRIIL---DEPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVA-WTFLTR  194 (392)
Q Consensus       121 s~-~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~  194 (392)
                      || ....|++|..-+.|++|...++.-..   .+..|...|..++|||. ...|++|+.||+|+|||+|.+.. ...+..
T Consensus       220 Sp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k  299 (440)
T KOG0302|consen  220 SPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK  299 (440)
T ss_pred             ccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEee
Confidence            99 23358888888999999988876432   34567779999999995 45799999999999999998832 222234


Q ss_pred             CCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC---ceeeeeecccCCCcEEEEECCC-CCEEEEEeCCCcEEE
Q 016257          195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST---WNKIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICV  270 (392)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i  270 (392)
                      .++..|+.+.|+.....     +++|++||+++|||+|.   ++++..++.|..+|+++.|+|. ...|++++.|..|.|
T Consensus       300 Ah~sDVNVISWnr~~~l-----LasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti  374 (440)
T KOG0302|consen  300 AHNSDVNVISWNRREPL-----LASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI  374 (440)
T ss_pred             ccCCceeeEEccCCcce-----eeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence            45568999999988774     79999999999999985   4567889999999999999996 467888899999999


Q ss_pred             EecCCcee---------------eeeeeccc-cCcceEEEEEeeCCC-eEEEEeCCCeE
Q 016257          271 VDVKKMEI---------------NHWSKRLH-LGTSIALVEFCPTQR-VVLTASKEWGA  312 (392)
Q Consensus       271 wd~~~~~~---------------~~~~~~~~-~~~~i~~~~~s~~~~-~l~~~~~dg~i  312 (392)
                      ||+..-.-               ...+...| .+..+..+.|++.-. +|++.+.||.-
T Consensus       375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfn  433 (440)
T KOG0302|consen  375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFN  433 (440)
T ss_pred             EEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccccee
Confidence            99863211               11111223 256788899998654 77888888643

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.93  E-value=3.3e-23  Score=163.25  Aligned_cols=277  Identities=12%  Similarity=0.168  Sum_probs=207.0

Q ss_pred             CCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC-eEEEEeCC-------CeEEEEEEeCCccceeec-
Q 016257           32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCSTTN-------GGCKLFEVYGGATDINLL-  102 (392)
Q Consensus        32 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~~~~~d-------~~i~iw~~~~~~~~~~~~-  102 (392)
                      ..+|.|.+..+++.+..+     ....|..|.+.|..++-+|-.+ .|+++-.+       -.+.||.+.......... 
T Consensus        37 K~dNqVhll~~d~e~s~l-----~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~t  111 (370)
T KOG1007|consen   37 KEDNQVHLLRLDSEGSEL-----LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSST  111 (370)
T ss_pred             CCcceeEEEEecCccchh-----hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccch
Confidence            357999999999877544     3456778999999999999554 55554321       136799987654321111 


Q ss_pred             --cccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee-eccc-----CCCCcEEEEEecC--CCCeEEEE
Q 016257          103 --AKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEP-----KAHKSVLDMDFSL--DSEFLATT  172 (392)
Q Consensus       103 --~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~-----~~~~~i~~i~~~~--~~~~l~~~  172 (392)
                        .-..-...+.+.|.|+.|.|++..+++-. |..|.+|+++.+..+ ..+.     .+....++-+|+|  +++.+++.
T Consensus       112 lE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt  190 (370)
T KOG1007|consen  112 LECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT  190 (370)
T ss_pred             hhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe
Confidence              00111112456899999999999999876 889999999877652 2221     1233678889999  77777776


Q ss_pred             cCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc-eeeeeecccCCCcEEEE
Q 016257          173 STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRLLRKPASVLS  251 (392)
Q Consensus       173 ~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~  251 (392)
                      + |+++..||+++.++...+...|...+..+.|+|+.++.    ++++++|+.|++||.+.- .++..+..|...+.++.
T Consensus       191 ~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~----lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR  265 (370)
T KOG1007|consen  191 S-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHI----LVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR  265 (370)
T ss_pred             C-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEE----EEEcCCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence            5 69999999999999888888888889999999998863    799999999999999864 46788899999999999


Q ss_pred             ECCC-CCEEEEEeCCCcEEEEecCCce------------------------eeee----eeccccCcceEEEEEeeCCC-
Q 016257          252 ISLD-GKYLAMGSKDGDICVVDVKKME------------------------INHW----SKRLHLGTSIALVEFCPTQR-  301 (392)
Q Consensus       252 ~s~~-~~~l~~~~~dg~i~iwd~~~~~------------------------~~~~----~~~~~~~~~i~~~~~s~~~~-  301 (392)
                      |+|. .+++++|+.|..|.+|...+-.                        ++..    ....| +..|++++||.-.. 
T Consensus       266 fn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh-EDSVY~~aWSsadPW  344 (370)
T KOG1007|consen  266 FNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH-EDSVYALAWSSADPW  344 (370)
T ss_pred             ecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc-ccceEEEeeccCCCe
Confidence            9995 5788999999999999653210                        0000    12456 88999999998666 


Q ss_pred             eEEEEeCCCeEEEEEeecC
Q 016257          302 VVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       302 ~l~~~~~dg~i~iw~~~~~  320 (392)
                      .+|+-+.||.+.|-.+...
T Consensus       345 iFASLSYDGRviIs~V~r~  363 (370)
T KOG1007|consen  345 IFASLSYDGRVIISSVPRF  363 (370)
T ss_pred             eEEEeccCceEEeecCChh
Confidence            5677899999999777643

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.92  E-value=9.9e-23  Score=167.69  Aligned_cols=302  Identities=13%  Similarity=0.103  Sum_probs=214.4

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccc-cCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY-TSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~   82 (392)
                      ..||+.+.|.++...  .+++|++      |..|++|.+......-. ..-.....|..|...|+++.|+|+|+.||+|+
T Consensus        13 ~~pv~s~dfq~n~~~--~laT~G~------D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~   84 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLN--KLATAGG------DKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG   84 (434)
T ss_pred             CCceEEEEeccCccc--ceecccC------ccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC
Confidence            457888888887743  5666555      88899999975432221 12234456889999999999999999999999


Q ss_pred             CCCeEEEEEEeCCcc----c-----eeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCC
Q 016257           83 TNGGCKLFEVYGGAT----D-----INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (392)
Q Consensus        83 ~d~~i~iw~~~~~~~----~-----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  153 (392)
                      .+|.+.+|....-..    .     ............|...+..++|+|++.++++++.|..+++||+..|+.......|
T Consensus        85 D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh  164 (434)
T KOG1009|consen   85 DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH  164 (434)
T ss_pred             CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc
Confidence            999999998762111    0     0000001111237789999999999999999999999999999999998888888


Q ss_pred             CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe---------cCCC-------------cceEEEEecCCCCc
Q 016257          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT---------RNSD-------------EKIELCRFSKDGTK  211 (392)
Q Consensus       154 ~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~---------~~~~-------------~~v~~~~~~~~~~~  211 (392)
                      ...+..++|.|-++++++-+.|...+.+.+...+.+....         .+..             .-.+.++|+|+|..
T Consensus       165 ~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l  244 (434)
T KOG1009|consen  165 EHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL  244 (434)
T ss_pred             ccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE
Confidence            8899999999999999999999888877765433322211         0111             12345789999885


Q ss_pred             ceEEEEEEeCC---------ccEEEEEeCCCc-eeeeeecccCCCcEEEEECC------------------CCCEEEEEe
Q 016257          212 PFLFCTVQRGD---------KALLAVYDISTW-NKIGHKRLLRKPASVLSISL------------------DGKYLAMGS  263 (392)
Q Consensus       212 ~~~~~~~~~~~---------d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~s~------------------~~~~l~~~~  263 (392)
                           +++...         -+..++|+-... ++...+.....+...+.++|                  -+-.+|.++
T Consensus       245 -----lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt  319 (434)
T KOG1009|consen  245 -----LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT  319 (434)
T ss_pred             -----EEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee
Confidence                 222211         133455554322 23333344444444454443                  233456666


Q ss_pred             CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257          264 KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       264 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      . +.|++||.++.++.......| -..|+.++|++||..|+..|.||.+.+-.+...
T Consensus       320 ~-~svyvydtq~~~P~~~v~nih-y~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  320 K-NSVYVYDTQTLEPLAVVDNIH-YSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             c-ceEEEeccccccceEEEeeee-eeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence            5 569999999988888887888 899999999999999999999999988777643

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=3.3e-25  Score=194.45  Aligned_cols=212  Identities=15%  Similarity=0.207  Sum_probs=186.0

Q ss_pred             cCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCC
Q 016257           34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAG  113 (392)
Q Consensus        34 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  113 (392)
                      +.++.+|...        .+.....|.+|..+|.++.|+++..+|++|+.+|+|++||++..+....+.       .|..
T Consensus        49 ~~k~~L~~i~--------kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt-------gh~~  113 (825)
T KOG0267|consen   49 DEKVNLWAIG--------KPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT-------GHLL  113 (825)
T ss_pred             ceeecccccc--------CCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhh-------cccc
Confidence            5566677765        334444589999999999999999999999999999999999887655443       3677


Q ss_pred             CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe
Q 016257          114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT  193 (392)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  193 (392)
                      .+..+.|+|-+.+.++|+.|+.+.+||.+...+...+..|...+..+.|+|+|++++.+++|.++++||+..|+....|.
T Consensus       114 ~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~  193 (825)
T KOG0267|consen  114 NITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK  193 (825)
T ss_pred             CcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccc
Confidence            89999999999999999999999999999888888888877789999999999999999999999999999999999888


Q ss_pred             cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCC
Q 016257          194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG  266 (392)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  266 (392)
                      .|. +.+..+.|+|..-.     +..|+.|+++++||+++.+.+.........|.+.+|+|+++.+++|....
T Consensus       194 ~~e-~~v~sle~hp~e~L-----la~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  194 SHE-GKVQSLEFHPLEVL-----LAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             ccc-ccccccccCchhhh-----hccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence            664 47999999998765     79999999999999999888888887788999999999999999987654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.92  E-value=4.4e-23  Score=178.98  Aligned_cols=197  Identities=17%  Similarity=0.162  Sum_probs=147.0

Q ss_pred             cEEEEEecC-CCCeEEEEcCCCcEEEEECCCC-------eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEE
Q 016257          156 SVLDMDFSL-DSEFLATTSTDGSARIWKTEDG-------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (392)
Q Consensus       156 ~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~  227 (392)
                      .|+++.|+| |...|++++.||.|++|.+..+       .+...+..| .+.|+++.|+|-...+    +++++.|-+|+
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h-~eKI~slRfHPLAadv----La~asyd~Ti~  703 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIH-GEKITSLRFHPLAADV----LAVASYDSTIE  703 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecc-cceEEEEEecchhhhH----hhhhhccceee
Confidence            578999999 7788999999999999998753       233444444 4589999999975542    68899999999


Q ss_pred             EEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEe
Q 016257          228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS  307 (392)
Q Consensus       228 v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  307 (392)
                      +||+++.+....+.+|...|..++|||+|+.+|+.+.||+|++|+.++++.......+..+..--.+.|.-||+++++.+
T Consensus       704 lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~G  783 (1012)
T KOG1445|consen  704 LWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVG  783 (1012)
T ss_pred             eeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEec
Confidence            99999999999999999999999999999999999999999999998877544332333234455678889999999888


Q ss_pred             CC----CeEEEEEeecCccccce--eeeeeeee---e-eeeceEEEEee-ecceeeeeccc
Q 016257          308 KE----WGAMITKLTVPADWKEW--QIYSLLLA---L-FLASAVVFYIF-FENSDSFWNFP  357 (392)
Q Consensus       308 ~d----g~i~iw~~~~~~~~~~~--~~~~~~~~---~-~~~~~~~~~~~-~d~~i~~W~~~  357 (392)
                      .|    ..|.+|+.......+..  .+...+..   + .-.++.++..+ .|..|+++.+-
T Consensus       784 fdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~  844 (1012)
T KOG1445|consen  784 FDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI  844 (1012)
T ss_pred             ccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEec
Confidence            77    46778877654322222  11111111   1 12445555555 78888888775

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.92  E-value=1.8e-22  Score=161.49  Aligned_cols=288  Identities=18%  Similarity=0.202  Sum_probs=204.3

Q ss_pred             eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccc------cCCceEEEeeCCCCCeeEEEEc-------C
Q 016257            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY------TSPLVTYVFDESEGDPMTIAVN-------P   73 (392)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~------~~~~~~~~~~~h~~~v~~~~~s-------p   73 (392)
                      ...+.|+||+.-  +++       ...++.+.+|.+..+.....      .......... ..+.|+..+|-       |
T Consensus        52 ~kgckWSPDGSc--iL~-------~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~-eg~tvydy~wYs~M~s~qP  121 (406)
T KOG2919|consen   52 LKGCKWSPDGSC--ILS-------LSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ-EGETVYDYCWYSRMKSDQP  121 (406)
T ss_pred             hccceeCCCCce--EEe-------ecccCeeeEEecChhhcccCCCCccccccceeEEec-cCCEEEEEEeeeccccCCC
Confidence            467899999964  444       44688899999864332211      1111222222 24578888874       6


Q ss_pred             CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC-CCCceee--cc
Q 016257           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW-PSLRIIL--DE  150 (392)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~-~~~~~~~--~~  150 (392)
                      +..++++.+.+.-|++||.-+++....+..-  .....-....+++|+|||.+|++|. ...|+++|+ +.|....  ..
T Consensus       122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~y--dh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t  198 (406)
T KOG2919|consen  122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAY--DHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT  198 (406)
T ss_pred             ccceeeeccccCceeeeeccccccccchhhh--hhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhh
Confidence            7789999999999999999998865443221  1111123557999999999999875 678999999 5554321  11


Q ss_pred             cC-----CCCcEEEEEecC-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeC-Cc
Q 016257          151 PK-----AHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-DK  223 (392)
Q Consensus       151 ~~-----~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~d  223 (392)
                      ..     ..+-|.+++|+| +.+.++.++....+-|+.-..+.++..+-++ .+.|+.+.|.++|+.     ++++. .+
T Consensus       199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh-~gGvThL~~~edGn~-----lfsGaRk~  272 (406)
T KOG2919|consen  199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH-GGGVTHLQWCEDGNK-----LFSGARKD  272 (406)
T ss_pred             hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc-CCCeeeEEeccCcCe-----ecccccCC
Confidence            11     234688999999 5568999999889999988888888877655 557999999999998     55554 47


Q ss_pred             cEEEEEeCCCce-eeeeecccCC-CcE--EEEECCCCCEEEEEeCCCcEEEEecCC-ceeeeeeeccccCcceEEEEEee
Q 016257          224 ALLAVYDISTWN-KIGHKRLLRK-PAS--VLSISLDGKYLAMGSKDGDICVVDVKK-MEINHWSKRLHLGTSIALVEFCP  298 (392)
Q Consensus       224 ~~i~v~d~~~~~-~~~~~~~~~~-~v~--~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~  298 (392)
                      ..|..||+|.-+ ++..+..|.. .-.  -....|++++|++|+.||.|++||+++ +..+..+ ..+ ...++.++++|
T Consensus       273 dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~-~~~-sd~vNgvslnP  350 (406)
T KOG2919|consen  273 DKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT-GNY-SDTVNGVSLNP  350 (406)
T ss_pred             CeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc-ccc-cccccceecCc
Confidence            889999999643 3444444433 222  345578999999999999999999998 5544444 456 78999999999


Q ss_pred             CCCeEEEEeCCCeEEEEEee
Q 016257          299 TQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       299 ~~~~l~~~~~dg~i~iw~~~  318 (392)
                      -=.++++++..   +++...
T Consensus       351 ~mpilatssGq---r~f~~~  367 (406)
T KOG2919|consen  351 IMPILATSSGQ---RIFKYP  367 (406)
T ss_pred             ccceeeeccCc---eeecCC
Confidence            98888888766   555443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=6.6e-23  Score=176.56  Aligned_cols=286  Identities=14%  Similarity=0.107  Sum_probs=216.0

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC--eEEEE
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD--DFVCS   81 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~--~l~~~   81 (392)
                      .+.|+|++-.|.+   ..+++|+.      ++++++|.+.        +..+..++. ..+.|.|++|+|.++  .||++
T Consensus       400 tg~Vr~iSvdp~G---~wlasGsd------DGtvriWEi~--------TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA  461 (733)
T KOG0650|consen  400 TGLVRSISVDPSG---EWLASGSD------DGTVRIWEIA--------TGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA  461 (733)
T ss_pred             CCeEEEEEecCCc---ceeeecCC------CCcEEEEEee--------cceEEEEEe-ecceeEEEEecCCCCceeEEEE
Confidence            4789999999977   56888877      6779999997        444444443 256899999999775  45555


Q ss_pred             eCCCeEEEEEEeCCccce---------ee------------cc---------ccCCCCCCCCCeEEEEecCCCCEEEEEe
Q 016257           82 TTNGGCKLFEVYGGATDI---------NL------------LA---------KKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (392)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~---------~~------------~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~  131 (392)
                      -... +.|.+..-+....         ..            ..         .....+.|...|+.+.|+..|.||++..
T Consensus       462 ~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~  540 (733)
T KOG0650|consen  462 VGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM  540 (733)
T ss_pred             ecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence            4444 5555543321100         00            00         0011234678899999999999999976


Q ss_pred             CC---CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCC
Q 016257          132 VD---GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD  208 (392)
Q Consensus       132 ~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (392)
                      .+   ..|.|+++........+...++.|..+.|+|...+|++++. ..|++||+..+..++.+..... .|..++.+|.
T Consensus       541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~k-wiS~msihp~  618 (733)
T KOG0650|consen  541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSK-WISSMSIHPN  618 (733)
T ss_pred             cCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCe-eeeeeeecCC
Confidence            53   56889998776665556666778999999999999998886 7899999988877777765544 7999999999


Q ss_pred             CCcceEEEEEEeCCccEEEEEeCCCc-eeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEe------cCCceee--
Q 016257          209 GTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD------VKKMEIN--  279 (392)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd------~~~~~~~--  279 (392)
                      |..     ++.++.|+.+..||+.-. ++.+.++.|...+++++|++.-.++++|+.||++.||.      +-...++  
T Consensus       619 GDn-----li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVP  693 (733)
T KOG0650|consen  619 GDN-----LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVP  693 (733)
T ss_pred             CCe-----EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEe
Confidence            998     899999999999999854 56788889999999999999999999999999999984      3222211  


Q ss_pred             eeeecccc---CcceEEEEEeeCCCeEEEEeCCCeEEEE
Q 016257          280 HWSKRLHL---GTSIALVEFCPTQRVVLTASKEWGAMIT  315 (392)
Q Consensus       280 ~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~iw  315 (392)
                      .....+|.   ...|..+.|+|...+|++++.||+|++|
T Consensus       694 lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  694 LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            12224561   2348889999999999999999999998

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.92  E-value=8.6e-23  Score=172.19  Aligned_cols=267  Identities=15%  Similarity=0.145  Sum_probs=202.6

Q ss_pred             ceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEE--EeCCCeEEEEEEeCCccceeeccccCCCCCCCC
Q 016257           36 VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC--STTNGGCKLFEVYGGATDINLLAKKMPPLQDAG  113 (392)
Q Consensus        36 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~--~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  113 (392)
                      ++++|++.......    .......  .-.+.++.|+.... |++  .+.|..+++|.-...........  ..   ...
T Consensus        13 ~~kl~D~s~~~~~~----~~~~~t~--~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~--k~---~gd   80 (673)
T KOG4378|consen   13 KTKLSDFSDLETKS----EYVHQTA--EPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVR--KL---TGD   80 (673)
T ss_pred             ceEEeecccccCcc----ccccCCC--CCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceee--cc---ccc
Confidence            48899887443211    1111111  22388899987654 444  35677788887544311111111  00   112


Q ss_pred             CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe
Q 016257          114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT  193 (392)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  193 (392)
                      .-.|++......++++|+..+.|+|||++...+.+.+..|...|+++.++....+||+++..|.|.|..+.++.....+.
T Consensus        81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~  160 (673)
T KOG4378|consen   81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT  160 (673)
T ss_pred             hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee
Confidence            33455554555799999999999999999766666777788899999999999999999999999999999988888887


Q ss_pred             cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeee-cccCCCcEEEEECCC-CCEEEEEeCCCcEEEE
Q 016257          194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLD-GKYLAMGSKDGDICVV  271 (392)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw  271 (392)
                      ...+..++-+.|+|..+.+    +.+++++|.|.+||+....++... ..|..+...++|+|. ..+|++.+.|.+|.+|
T Consensus       161 ~~sgqsvRll~ys~skr~l----L~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~y  236 (673)
T KOG4378|consen  161 IDSGQSVRLLRYSPSKRFL----LSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIY  236 (673)
T ss_pred             cCCCCeEEEeeccccccee----eEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEe
Confidence            7767678899999998863    688999999999999987776443 578889999999995 5778899999999999


Q ss_pred             ecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCc
Q 016257          272 DVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (392)
Q Consensus       272 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  321 (392)
                      |....+....+.-   ..+.+.++|+++|.+|++|+..|.|..||++..+
T Consensus       237 D~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k  283 (673)
T KOG4378|consen  237 DIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK  283 (673)
T ss_pred             ecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence            9998776665533   5589999999999999999999999999998543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.91  E-value=8.3e-23  Score=178.25  Aligned_cols=279  Identities=13%  Similarity=0.154  Sum_probs=207.1

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d   84 (392)
                      .-|+.++|-||+.. .+++.|+.           ++.+|++      .+....++++|.+.|+|++|+.||+.+|+|+.|
T Consensus        13 hci~d~afkPDGsq-L~lAAg~r-----------lliyD~n------dG~llqtLKgHKDtVycVAys~dGkrFASG~aD   74 (1081)
T KOG1538|consen   13 HCINDIAFKPDGTQ-LILAAGSR-----------LLVYDTS------DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSAD   74 (1081)
T ss_pred             cchheeEECCCCce-EEEecCCE-----------EEEEeCC------CcccccccccccceEEEEEEccCCceeccCCCc
Confidence            46889999999987 33443333           5555544      444556799999999999999999999999999


Q ss_pred             CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecC
Q 016257           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL  164 (392)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~  164 (392)
                      ..|.+|+-+-...         -...|...|.|+.|+|-.+.|++++-+ ..-+|..+.....  .......+.+++|..
T Consensus        75 K~VI~W~~klEG~---------LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~--K~kss~R~~~CsWtn  142 (1081)
T KOG1538|consen   75 KSVIIWTSKLEGI---------LKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS--KHKSSSRIICCSWTN  142 (1081)
T ss_pred             eeEEEecccccce---------eeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH--hhhhheeEEEeeecC
Confidence            9999998654331         112488999999999998899998754 3668876543222  122334789999999


Q ss_pred             CCCeEEEEcCCCcEEEEECCCCeeeEEEe--cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc
Q 016257          165 DSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (392)
Q Consensus       165 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~  242 (392)
                      ||++++.|-.||+|.+-+- ++++...+.  ++.+++|.+++|+|....-..-.++...-..++..|.+. ++.+..-+.
T Consensus       143 DGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~  220 (1081)
T KOG1538|consen  143 DGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRA  220 (1081)
T ss_pred             CCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccccc
Confidence            9999999999999998764 444444443  345678999999997542111124555556667777665 455544455


Q ss_pred             cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      ......|+.+.++|.++..|+.|+.+++|-. .|-.+.+... . ...|+.++..|++++++.|+.||+|..|++-
T Consensus       221 L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~-~-D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  221 LNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGE-Q-DSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             CCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccc-c-ceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            5666779999999999999999999999964 4444444422 2 6799999999999999999999999998875

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.91  E-value=5.3e-23  Score=178.47  Aligned_cols=129  Identities=17%  Similarity=0.270  Sum_probs=102.8

Q ss_pred             EEEeeCCCCCeeEEEEcC-CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC
Q 016257           56 TYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (392)
Q Consensus        56 ~~~~~~h~~~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (392)
                      ...+.+|.+.|+.+.|+| +..+||+++.|..|+||.+..+. ...+.......-...-.+.++.|+|...-|+..+.-|
T Consensus        72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~-~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g  150 (1012)
T KOG1445|consen   72 IGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGH-SQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG  150 (1012)
T ss_pred             cceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCc-ccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence            345789999999999999 45588999999999999998443 2222222221122345789999999655555555689


Q ss_pred             cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 016257          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED  185 (392)
Q Consensus       135 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~  185 (392)
                      .+++||+.+++....+.+|...|.+..|+.||++|++++.|..|+|||.+.
T Consensus       151 ~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa  201 (1012)
T KOG1445|consen  151 SVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA  201 (1012)
T ss_pred             eEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence            999999999999999999999999999999999999999999999999763

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.91  E-value=1.2e-22  Score=176.07  Aligned_cols=287  Identities=15%  Similarity=0.136  Sum_probs=197.2

Q ss_pred             eEEEEcC---CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 016257           67 MTIAVNP---SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (392)
Q Consensus        67 ~~~~~sp---~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~  143 (392)
                      .+..|++   ....|+.+..+|.|.++|.+...... ........+.|...|..+.|-|....|++++.|.+++.||+++
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~-ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~  131 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL-EERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT  131 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcch-hhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc
Confidence            4467765   23478899999999999987654321 1111234456899999999999767899999999999999999


Q ss_pred             Cceeec--ccCCCCcEEEEEecCCC-CeEEEEcCCCcEEEEECCCCee--------------------eE-------EEe
Q 016257          144 LRIILD--EPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVA--------------------WT-------FLT  193 (392)
Q Consensus       144 ~~~~~~--~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~--------------------~~-------~~~  193 (392)
                      .+....  ..+|...+.+++|.|+. ..|++|+.||.|.|||++-...                    ..       ...
T Consensus       132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k  211 (720)
T KOG0321|consen  132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK  211 (720)
T ss_pred             ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence            888766  78888999999999954 5788999999999999874321                    00       000


Q ss_pred             cCCCcceEE---EEecCCCCcceEEEEEEeCC-ccEEEEEeCCCceeeeee--------ccc---CCCcEEEEECCCCCE
Q 016257          194 RNSDEKIEL---CRFSKDGTKPFLFCTVQRGD-KALLAVYDISTWNKIGHK--------RLL---RKPASVLSISLDGKY  258 (392)
Q Consensus       194 ~~~~~~v~~---~~~~~~~~~~~~~~~~~~~~-d~~i~v~d~~~~~~~~~~--------~~~---~~~v~~~~~s~~~~~  258 (392)
                      .+ ...+.+   +.+..|...     +++++. |+.|+|||++........        ..+   ...+.++.....|.+
T Consensus       212 A~-s~ti~ssvTvv~fkDe~t-----laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~  285 (720)
T KOG0321|consen  212 AA-SNTIFSSVTVVLFKDEST-----LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY  285 (720)
T ss_pred             cc-cCceeeeeEEEEEeccce-----eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence            11 112333   334445554     677666 999999999975442211        112   235677888888899


Q ss_pred             EEEEeCCCcEEEEecCCceeeee-eeccccCcce-EEEEEeeCCCeEEEEeCCCeEEEEEeecCccccce---ee--eee
Q 016257          259 LAMGSKDGDICVVDVKKMEINHW-SKRLHLGTSI-ALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEW---QI--YSL  331 (392)
Q Consensus       259 l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~i-~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~--~~~  331 (392)
                      |++.+.|+.|+.|++.+...--. ...++..... ..-..+|++.+|++|+.|...++|.++.+..-.+.   +.  ...
T Consensus       286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~  365 (720)
T KOG0321|consen  286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTT  365 (720)
T ss_pred             EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEE
Confidence            99888899999999987542211 1122211111 12246899999999999999999999977654322   11  112


Q ss_pred             eeeeeeeceEEEEeeecceeeeecccccc
Q 016257          332 LLALFLASAVVFYIFFENSDSFWNFPVAR  360 (392)
Q Consensus       332 ~~~~~~~~~~~~~~~~d~~i~~W~~~~~~  360 (392)
                      .........-+++++.|..+++|++..+-
T Consensus       366 V~w~pS~~t~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  366 VRWLPSATTPVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             EeeccccCCCceeeccCcceEEEeccCch
Confidence            22223344566777889999999996553

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.91  E-value=2e-22  Score=165.31  Aligned_cols=282  Identities=12%  Similarity=0.104  Sum_probs=200.4

Q ss_pred             ceeeeecCCC-----CCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC-CCCeE
Q 016257            5 GTVTCGSWIK-----RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDF   78 (392)
Q Consensus         5 ~~v~~~~w~~-----~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l   78 (392)
                      -+|+-++|..     ++..++++.-+++.+.      ..+.-+...+..-    ...-.+.||+++|..++|+| +.+.|
T Consensus        28 IrVs~~tWDS~fcavNPkfiAvi~easgGga------f~ViPl~k~Gr~d----~~~P~v~GHt~~vLDi~w~PfnD~vI   97 (472)
T KOG0303|consen   28 IRVSRVTWDSSFCAVNPKFVAVIIEASGGGA------FLVIPLVKTGRMD----ASYPLVCGHTAPVLDIDWCPFNDCVI   97 (472)
T ss_pred             eeeeeeeccccccccCCceEEEEEecCCCcc------eeecccccccccC----CCCCCccCccccccccccCccCCcee
Confidence            3566677765     3344455544444322      3344443222111    11123679999999999999 55688


Q ss_pred             EEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeecccCCCCcE
Q 016257           79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV  157 (392)
Q Consensus        79 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i  157 (392)
                      |+|+.|.+|.||.+..+.....+.........|...|-.++|+|. .+.|++++.|.+|.+||+.+++.+..+. |...|
T Consensus        98 ASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i  176 (472)
T KOG0303|consen   98 ASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMV  176 (472)
T ss_pred             ecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeE
Confidence            999999999999998876555544333334458899999999994 5688999999999999999999887765 88899


Q ss_pred             EEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceee
Q 016257          158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI  237 (392)
Q Consensus       158 ~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~  237 (392)
                      +++.|+.||.+|++.+.|..|+|||.++++.+..-..|.+..-..+.|-.++..  +...++...+.++.+||....+..
T Consensus       177 ~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i--~tTGfsr~seRq~aLwdp~nl~eP  254 (472)
T KOG0303|consen  177 YSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKI--FTTGFSRMSERQIALWDPNNLEEP  254 (472)
T ss_pred             EEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCce--eeeccccccccceeccCcccccCc
Confidence            999999999999999999999999999999998887777767778888888882  222333446789999998765432


Q ss_pred             eeec--ccCCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCceee-eeeeccccCcceEEEEEeeC
Q 016257          238 GHKR--LLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEIN-HWSKRLHLGTSIALVEFCPT  299 (392)
Q Consensus       238 ~~~~--~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~-~~~~~~~~~~~i~~~~~s~~  299 (392)
                      ..+.  .....|.-.-|.+|.+.++.++ .|+.|+.|.+...... ..+.......+-..+.|-|.
T Consensus       255 ~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  255 IALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             ceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence            2222  2245676677888888877655 7999999999775522 22211111445566777664

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.91  E-value=4.6e-22  Score=159.25  Aligned_cols=253  Identities=13%  Similarity=0.095  Sum_probs=186.8

Q ss_pred             CeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCcccee------eccccCCCCCCCCCeEEEEec-------CCCCEEEEEe
Q 016257           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN------LLAKKMPPLQDAGPQKCLSFS-------VDGSRFAAGG  131 (392)
Q Consensus        65 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~s-------~~~~~l~~~~  131 (392)
                      -...+.|+|||..|++-+.|..+.+|++........      +.............|...+|-       |+..++++.+
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            345689999999999999999999999864432111      000000111223566777764       5777999999


Q ss_pred             CCCcEEEEeCCCCceeecccC--CCC---cEEEEEecCCCCeEEEEcCCCcEEEEEC-CCCeeeE---EEe---cCCCcc
Q 016257          132 VDGHLRIMHWPSLRIILDEPK--AHK---SVLDMDFSLDSEFLATTSTDGSARIWKT-EDGVAWT---FLT---RNSDEK  199 (392)
Q Consensus       132 ~dg~i~i~d~~~~~~~~~~~~--~~~---~i~~i~~~~~~~~l~~~~~d~~i~vwd~-~~~~~~~---~~~---~~~~~~  199 (392)
                      .+.-|++||.-+|+....+..  |..   ...+++|+|||.+|++|. .+.|++||+ +.|..-.   ++.   ....+.
T Consensus       131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gi  209 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI  209 (406)
T ss_pred             ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccce
Confidence            999999999999887655433  333   456899999999998775 589999999 4443211   111   123457


Q ss_pred             eEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeC-CCcEEEEecCCcee
Q 016257          200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEI  278 (392)
Q Consensus       200 v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~  278 (392)
                      +.+++|+|....    +++.++....+-||.-..+.++..+.+|.+.|+.+.|.++|+.|++|+. |..|..||++....
T Consensus       210 isc~a~sP~~~~----~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~  285 (406)
T KOG2919|consen  210 ISCFAFSPMDSK----TLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD  285 (406)
T ss_pred             eeeeeccCCCCc----ceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence            889999998764    2688899999999999888999999999999999999999999999984 67899999997554


Q ss_pred             eeeeeccccCcceEEE--EEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257          279 NHWSKRLHLGTSIALV--EFCPTQRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       279 ~~~~~~~~~~~~i~~~--~~s~~~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                      +......|....-..+  ...|++++|++|+.||.|++||++....
T Consensus       286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn  331 (406)
T KOG2919|consen  286 PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN  331 (406)
T ss_pred             hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence            3332234422233344  4467899999999999999999997554

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.2e-21  Score=155.76  Aligned_cols=253  Identities=11%  Similarity=0.151  Sum_probs=183.7

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC--CCCeEEEEeC
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCSTT   83 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~~~~l~~~~~   83 (392)
                      -|.|+.|.+-+.|   +++++      +|.+++||+++.+....    .+....+.|.+.|..+.|-+  -|+.+|+++.
T Consensus        15 lihdVs~D~~GRR---mAtCS------sDq~vkI~d~~~~s~~W----~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~   81 (361)
T KOG2445|consen   15 LIHDVSFDFYGRR---MATCS------SDQTVKIWDSTSDSGTW----SCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY   81 (361)
T ss_pred             eeeeeeecccCce---eeecc------CCCcEEEEeccCCCCce----EEeeeEEecCCcEEEEEecCccccceEEEEec
Confidence            3899999999876   44333      47789999987665443    34566889999999999954  6899999999


Q ss_pred             CCeEEEEEEeCCc--cceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEeCCCcEEEEeCCCC------ceeeccc--
Q 016257           84 NGGCKLFEVYGGA--TDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSL------RIILDEP--  151 (392)
Q Consensus        84 d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~--  151 (392)
                      |+++.||.-....  ................+.|+.+.|.|  -|-.|++++.||.+|||+....      ....++.  
T Consensus        82 Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~  161 (361)
T KOG2445|consen   82 DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV  161 (361)
T ss_pred             CCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence            9999999863221  11111111111223467899999999  5778999999999999986432      1111221  


Q ss_pred             -----CCCCcEEEEEecCC---CCeEEEEcCC-----CcEEEEECCCCe----eeEEEecCCCcceEEEEecCCCCcceE
Q 016257          152 -----KAHKSVLDMDFSLD---SEFLATTSTD-----GSARIWKTEDGV----AWTFLTRNSDEKIELCRFSKDGTKPFL  214 (392)
Q Consensus       152 -----~~~~~i~~i~~~~~---~~~l~~~~~d-----~~i~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (392)
                           .++.+..|+.|+|.   ..+|+.|+.+     +.++||....+.    .+.++. .+..+|+.++|.|+-...|.
T Consensus       162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~  240 (361)
T KOG2445|consen  162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYH  240 (361)
T ss_pred             cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCcee
Confidence                 34457889999983   4568887765     478899865443    233444 34569999999998555443


Q ss_pred             EEEEEeCCccEEEEEeCCCc--------------------eeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecC
Q 016257          215 FCTVQRGDKALLAVYDISTW--------------------NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (392)
Q Consensus       215 ~~~~~~~~d~~i~v~d~~~~--------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  274 (392)
                      . +++++.|| |+||.++..                    +.+..+..|++.|..+.|.-.|..|++.+.||.|++|...
T Consensus       241 ~-lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  241 L-LAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             e-EEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            3 78899999 999998731                    2345567889999999999999999999999999999754

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=4.2e-22  Score=165.78  Aligned_cols=286  Identities=13%  Similarity=0.160  Sum_probs=194.1

Q ss_pred             eEEEEcCCCCeEEEEeCC---CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-------CCCEEEEEeCCCcE
Q 016257           67 MTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-------DGSRFAAGGVDGHL  136 (392)
Q Consensus        67 ~~~~~sp~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i  136 (392)
                      -.+..-|+.+.++++-.+   ..+.+|-.+....  .+..++-..  -.....|++|..       -|+++|.|+.|..|
T Consensus       129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~--nlYvHHD~i--lpafPLC~ewld~~~~~~~~gNyvAiGtmdp~I  204 (463)
T KOG0270|consen  129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEE--NLYVHHDFI--LPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEI  204 (463)
T ss_pred             ccceeccCCcEEEEeeccCCceEEEEEEEcCCCc--ceeEeccee--ccCcchhhhhhhcCCCCCCCcceEEEeccCcee
Confidence            345666766777766433   2344443333321  111100000  012335666633       36799999999999


Q ss_pred             EEEeCCCCce---eec------------------ccCCCCcEEEEEecCC-CCeEEEEcCCCcEEEEECCCCeeeEEEec
Q 016257          137 RIMHWPSLRI---ILD------------------EPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTR  194 (392)
Q Consensus       137 ~i~d~~~~~~---~~~------------------~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  194 (392)
                      .|||+.-...   ...                  ..+|...|..++|+.. .+.||+|+.|.+|++||+.++++..++. 
T Consensus       205 eIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-  283 (463)
T KOG0270|consen  205 EIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-  283 (463)
T ss_pred             EEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-
Confidence            9999842110   000                  1234456778888874 4579999999999999999999999887 


Q ss_pred             CCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCC-CEEEEEeCCCcEEEEec
Q 016257          195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDV  273 (392)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~  273 (392)
                      ++...|.++.|+|.....    +++|+.|+++.+.|.|........-...+.|..++|.|.. ..+++++.||+|+-+|+
T Consensus       284 ~~~k~Vq~l~wh~~~p~~----LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~  359 (463)
T KOG0270|consen  284 HHGKKVQTLEWHPYEPSV----LLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDI  359 (463)
T ss_pred             hcCCceeEEEecCCCceE----EEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeec
Confidence            445689999999987752    7999999999999999643333333346789999999965 56778889999999999


Q ss_pred             CCceeeeeeeccccCcceEEEEEeeCCC-eEEEEeCCCeEEEEEeecCccccce----eeee--eeeeeeeeceEEEEee
Q 016257          274 KKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLTVPADWKEW----QIYS--LLLALFLASAVVFYIF  346 (392)
Q Consensus       274 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~  346 (392)
                      +...........| .++|+++++++.-. ++++++.|+.+++|++.......+.    .+..  ...........++.++
T Consensus       360 R~~~~~vwt~~AH-d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG  438 (463)
T KOG0270|consen  360 RNPGKPVWTLKAH-DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGG  438 (463)
T ss_pred             CCCCCceeEEEec-cCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecC
Confidence            9874333444789 99999999988655 7889999999999999865443222    1111  1111111334566666


Q ss_pred             ecceeeeecccccccc
Q 016257          347 FENSDSFWNFPVARNQ  362 (392)
Q Consensus       347 ~d~~i~~W~~~~~~~~  362 (392)
                      ..+.+++||+.+...+
T Consensus       439 ~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  439 EKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ccceEEEeecccChhH
Confidence            7778999999876543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=4.1e-22  Score=162.60  Aligned_cols=228  Identities=15%  Similarity=0.238  Sum_probs=168.4

Q ss_pred             cCceeEEEEcCCCCcc--------ccCCceEEEeeCCCCCeeEEEEcCCC-CeEEEEeCCCeEEEEEEeCCccceeeccc
Q 016257           34 PSVLEIFSFDPKTTSV--------YTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAK  104 (392)
Q Consensus        34 ~~~i~i~~~~~~~~~~--------~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~  104 (392)
                      .+.++||.+.+.-..+        .......+++.+|.+.=+.++|||-. ..|++|..-+.|++|...++.-..    .
T Consensus       174 ~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v----d  249 (440)
T KOG0302|consen  174 NGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV----D  249 (440)
T ss_pred             cCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceee----c
Confidence            3457777765321111        12334567889999999999999933 258888878889999998865322    2


Q ss_pred             cCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCc--eeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEE
Q 016257          105 KMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIW  181 (392)
Q Consensus       105 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vw  181 (392)
                      ..+...|...|..++||| ....|++|+.||+|+|||++.+.  .......|...|+.|.|+.+-.+||+|+.||+++||
T Consensus       250 ~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iw  329 (440)
T KOG0302|consen  250 QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIW  329 (440)
T ss_pred             CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEE
Confidence            334445899999999999 45689999999999999999873  223346677789999999988899999999999999


Q ss_pred             ECCC---CeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee----------------eeeecc
Q 016257          182 KTED---GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK----------------IGHKRL  242 (392)
Q Consensus       182 d~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~----------------~~~~~~  242 (392)
                      |+++   ++++..+..| ..+|+++.|+|.....    +++++.|.+|.+||+....-                .+.+..
T Consensus       330 DLR~~~~~~pVA~fk~H-k~pItsieW~p~e~s~----iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFV  404 (440)
T KOG0302|consen  330 DLRQFKSGQPVATFKYH-KAPITSIEWHPHEDSV----IAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFV  404 (440)
T ss_pred             EhhhccCCCcceeEEec-cCCeeEEEeccccCce----EEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEE
Confidence            9985   4667778766 4589999999987652    68899999999999864211                111222


Q ss_pred             c--CCCcEEEEECCC-CCEEEEEeCCCcEEEE
Q 016257          243 L--RKPASVLSISLD-GKYLAMGSKDGDICVV  271 (392)
Q Consensus       243 ~--~~~v~~~~~s~~-~~~l~~~~~dg~i~iw  271 (392)
                      |  ...+..+.|+++ ..++++.+.|| +.||
T Consensus       405 HqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  405 HQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             ecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence            2  345777889885 35777777887 5555

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=7.1e-23  Score=188.91  Aligned_cols=256  Identities=13%  Similarity=0.157  Sum_probs=198.4

Q ss_pred             CceeeeecCCCCCcce-eEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC-eEEEE
Q 016257            4 GGTVTCGSWIKRPENV-NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCS   81 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~-~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~~~   81 (392)
                      ..+.+.++|.+.+.+. -+++.|.      .+|.|.+|+-+.-...  ...........|++.|..+.|++... .||+|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~------edG~I~ly~p~~~~~~--~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG  135 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGL------EDGNIVLYDPASIIAN--ASEEVLATKSKHTGPVLGLDFNPFQGNLLASG  135 (1049)
T ss_pred             cccceeeeecccCCCccceeeccc------cCCceEEecchhhccC--cchHHHhhhcccCCceeeeeccccCCceeecc
Confidence            4677899999976542 2444333      4777989987652111  12334456788999999999999655 99999


Q ss_pred             eCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeecccCCCC--cEE
Q 016257           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK--SVL  158 (392)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~  158 (392)
                      +.||.|.|||+.+.+......     .....+.|.+++|+. ..+.|++++.+|.+.|||++..+.+..+..+..  .+.
T Consensus       136 a~~geI~iWDlnn~~tP~~~~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S  210 (1049)
T KOG0307|consen  136 ADDGEILIWDLNKPETPFTPG-----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS  210 (1049)
T ss_pred             CCCCcEEEeccCCcCCCCCCC-----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcccee
Confidence            999999999998865433332     122457899999998 456788999999999999998888777665554  588


Q ss_pred             EEEecCCC-CeEEEEcCCC---cEEEEECCCC-eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257          159 DMDFSLDS-EFLATTSTDG---SARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (392)
Q Consensus       159 ~i~~~~~~-~~l~~~~~d~---~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~  233 (392)
                      .++|+|+. ..+++++.|.   .|.+||+|.- .+++.+..|.. .|.++.|++.+..+    +++++.|+.|.+|+.++
T Consensus       211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~l----llSsgkD~~ii~wN~~t  285 (1049)
T KOG0307|consen  211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRL----LLSSGKDNRIICWNPNT  285 (1049)
T ss_pred             eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchh----hhcccCCCCeeEecCCC
Confidence            99999976 4577776553   5999999864 45566655544 69999999988553    79999999999999999


Q ss_pred             ceeeeeecccCCCcEEEEECCCCC-EEEEEeCCCcEEEEecCCce
Q 016257          234 WNKIGHKRLLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKKME  277 (392)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~  277 (392)
                      ++.+..+......+..+.|+|... .+++.+-||.|.||.+.+..
T Consensus       286 gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  286 GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            999999988889999999999764 88889999999999987654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2e-21  Score=155.28  Aligned_cols=246  Identities=13%  Similarity=0.084  Sum_probs=173.5

Q ss_pred             CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceee----cccCCCCcEEEEEecCCCCeEEEE-cCCCcEEEEECC
Q 016257          110 QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL----DEPKAHKSVLDMDFSLDSEFLATT-STDGSARIWKTE  184 (392)
Q Consensus       110 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~vwd~~  184 (392)
                      .|.+.|++++|+.||++|++++.|+.|++|+++......    +..-.-+..+.+.|.||-+-++.. -...++++|.+.
T Consensus        84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~  163 (420)
T KOG2096|consen   84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV  163 (420)
T ss_pred             ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence            488999999999999999999999999999997633210    011111356789999998765544 445679999875


Q ss_pred             CCee---eE--------EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEEC
Q 016257          185 DGVA---WT--------FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS  253 (392)
Q Consensus       185 ~~~~---~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s  253 (392)
                      ..+.   ..        .+...+...+..+-....+.+     +++++.|..|.+|+++ ++.+..+......-+..+.|
T Consensus       164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~-----imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS  237 (420)
T KOG2096|consen  164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKY-----IMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS  237 (420)
T ss_pred             ecccCCCCcccccccccccchhcccceEEEeecCCceE-----EEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence            3221   11        112223334444555555554     7999999999999999 78888887777777889999


Q ss_pred             CCCCEEEEEeCCCcEEEEecC---Ccee---ee-eeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCc----c
Q 016257          254 LDGKYLAMGSKDGDICVVDVK---KMEI---NH-WSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA----D  322 (392)
Q Consensus       254 ~~~~~l~~~~~dg~i~iwd~~---~~~~---~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~----~  322 (392)
                      |+|+++++++---.|++|.+-   .|..   .+ ....+| .+.|..++|+++.+.+++.+.||++++||++..-    +
T Consensus       238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH-~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD  316 (420)
T KOG2096|consen  238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH-QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD  316 (420)
T ss_pred             CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc-hhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence            999999999988889999863   2221   11 123689 9999999999999999999999999999987431    1


Q ss_pred             ccceeee--------eee-eeeeeeceEEEEeeecceeeeecccccccc
Q 016257          323 WKEWQIY--------SLL-LALFLASAVVFYIFFENSDSFWNFPVARNQ  362 (392)
Q Consensus       323 ~~~~~~~--------~~~-~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~  362 (392)
                      .......        ..+ .-....++..+..++...++++....|+..
T Consensus       317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~  365 (420)
T KOG2096|consen  317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDY  365 (420)
T ss_pred             chHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccc
Confidence            1111111        011 111224556666777788999998887755

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.89  E-value=4.8e-21  Score=151.16  Aligned_cols=262  Identities=17%  Similarity=0.185  Sum_probs=189.0

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCcccc-CCceEEEee-CCCCCeeEEEEcCCCCeEEEE
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT-SPLVTYVFD-ESEGDPMTIAVNPSGDDFVCS   81 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~~~~-~h~~~v~~~~~sp~~~~l~~~   81 (392)
                      .|.|..++=+|..+++..-++... ..++.-....||.+..+...... +......|. .+-+.|.|+.|.|++..+++-
T Consensus        63 agEvw~las~P~d~~ilaT~yn~~-s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm  141 (370)
T KOG1007|consen   63 AGEVWDLASSPFDQRILATVYNDT-SDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM  141 (370)
T ss_pred             CcceehhhcCCCCCceEEEEEecc-CCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe
Confidence            578999999998877333333222 22445567789998754333111 112222343 456799999999999999987


Q ss_pred             eCCCeEEEEEEeCCcc-ceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEeCCCcEEEEeCCCCceeecccCCCC-cE
Q 016257           82 TTNGGCKLFEVYGGAT-DINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SV  157 (392)
Q Consensus        82 ~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i  157 (392)
                      . |..|.+|++..... ...+...  ...++....++-+|+|  |++.+++.+ |++++.||+++.++...+...|+ .+
T Consensus       142 ~-dn~i~l~~l~ess~~vaev~ss--~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~v  217 (370)
T KOG1007|consen  142 D-DNNIVLWSLDESSKIVAEVLSS--ESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRV  217 (370)
T ss_pred             c-cCceEEEEcccCcchheeeccc--ccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhccee
Confidence            5 66799999987765 2222221  1223456778889999  888888764 89999999999888777776665 79


Q ss_pred             EEEEecCCCC-eEEEEcCCCcEEEEECCCCe-eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc-
Q 016257          158 LDMDFSLDSE-FLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-  234 (392)
Q Consensus       158 ~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~-  234 (392)
                      .++.|+|+.+ +|++|+.||.|++||.+..+ ++..+..| ...+.++.|+|....+    +++++.|..|.+|...+- 
T Consensus       218 rdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~H-sHWvW~VRfn~~hdqL----iLs~~SDs~V~Lsca~svS  292 (370)
T KOG1007|consen  218 RDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGH-SHWVWAVRFNPEHDQL----ILSGGSDSAVNLSCASSVS  292 (370)
T ss_pred             eeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCC-ceEEEEEEecCccceE----EEecCCCceeEEEeccccc
Confidence            9999999765 58899999999999998765 45555544 5599999999987763    688999999999865421 


Q ss_pred             ----------------------------eeeeeecccCCCcEEEEECCCC-CEEEEEeCCCcEEEEecCC
Q 016257          235 ----------------------------NKIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKK  275 (392)
Q Consensus       235 ----------------------------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~  275 (392)
                                                  ..+..+..|...|.+++||.-. -.+|+-+.||++.|=.+..
T Consensus       293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence                                        1133556678899999998754 5578889999998866543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.89  E-value=2.8e-19  Score=156.77  Aligned_cols=273  Identities=10%  Similarity=0.094  Sum_probs=175.8

Q ss_pred             CcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe-CCCeEEEEEEeCCccceeeccccCCCCCC
Q 016257           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (392)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  111 (392)
                      .++.|.+|.++..+ .    ......+. +.+.+..++++|++++|++++ .++.|.+|++...... .....    ...
T Consensus        10 ~~~~I~~~~~~~~g-~----l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~----~~~   78 (330)
T PRK11028         10 ESQQIHVWNLNHEG-A----LTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAE----SPL   78 (330)
T ss_pred             CCCCEEEEEECCCC-c----eeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEeee----ecC
Confidence            45679999996322 1    12223333 346688899999999887764 4778999999632211 11111    112


Q ss_pred             CCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCCcee---ecccCCCCcEEEEEecCCCCeEEEEc-CCCcEEEEECCCC
Q 016257          112 AGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRII---LDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDG  186 (392)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~---~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~  186 (392)
                      .+....++|+|++++|++++. ++.|.+|++++....   .....+......++++|+++++++++ .++.|.+||+++.
T Consensus        79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            235678999999999888764 789999999643211   11112223567788999999886554 5689999999763


Q ss_pred             eeeE-----EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC--c--eeeeeeccc------CCCcEEEE
Q 016257          187 VAWT-----FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--W--NKIGHKRLL------RKPASVLS  251 (392)
Q Consensus       187 ~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~--~--~~~~~~~~~------~~~v~~~~  251 (392)
                      ..+.     ............++|+|+++++    .++...++.|.+||++.  +  +.+..+...      ......+.
T Consensus       159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~l----yv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~  234 (330)
T PRK11028        159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYA----YCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH  234 (330)
T ss_pred             CcccccCCCceecCCCCCCceEEECCCCCEE----EEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence            3221     1111223356789999999972    23444589999999973  2  222222211      11234688


Q ss_pred             ECCCCCEEEEEeC-CCcEEEEecCCce-eeeeeeccccCcceEEEEEeeCCCeEEEEeC-CCeEEEEEeecC
Q 016257          252 ISLDGKYLAMGSK-DGDICVVDVKKME-INHWSKRLHLGTSIALVEFCPTQRVVLTASK-EWGAMITKLTVP  320 (392)
Q Consensus       252 ~s~~~~~l~~~~~-dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~  320 (392)
                      ++|++++++++.. ++.|.+|++.... ................+.++|+|++|++++. +++|.+|+++..
T Consensus       235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~  306 (330)
T PRK11028        235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE  306 (330)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence            9999999999864 6889999986432 1111111110234568899999999988775 899999998643

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.88  E-value=3.2e-21  Score=150.25  Aligned_cols=250  Identities=16%  Similarity=0.137  Sum_probs=183.7

Q ss_pred             CceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC
Q 016257           53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (392)
Q Consensus        53 ~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  132 (392)
                      |...+.+++|.+.|+++.|..+++ |.+|...|.|++|++.+......+..      .+...|+.+.--|+ ..+.+-+.
T Consensus         4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~------~g~~~it~lq~~p~-d~l~tqgR   75 (323)
T KOG0322|consen    4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL------FGRLFITNLQSIPN-DSLDTQGR   75 (323)
T ss_pred             CCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh------hccceeeceeecCC-cchhhcCC
Confidence            344566789999999999988765 88999999999999998764333221      14557777777776 46677778


Q ss_pred             CCcEEEEeCCCCceeec------------------------c-----------------------------cCCCCcEEE
Q 016257          133 DGHLRIMHWPSLRIILD------------------------E-----------------------------PKAHKSVLD  159 (392)
Q Consensus       133 dg~i~i~d~~~~~~~~~------------------------~-----------------------------~~~~~~i~~  159 (392)
                      |..+.+|++..+..+..                        +                             ....+.+.+
T Consensus        76 d~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc  155 (323)
T KOG0322|consen   76 DPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC  155 (323)
T ss_pred             CceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence            88888887654211000                        0                             001123445


Q ss_pred             EEecC-CCC--eEEEEcCCCcEEEEECCCCeeeEEEe---------cCCCcceEEEEecCCCCcceEEEEEEeCCccEEE
Q 016257          160 MDFSL-DSE--FLATTSTDGSARIWKTEDGVAWTFLT---------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (392)
Q Consensus       160 i~~~~-~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~  227 (392)
                      ..+.- ++.  ++++|.++|.+.+||+.++..+-.+.         ..+..++.++.+.+.-..     .+.++.+..+.
T Consensus       156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r-----Gisgga~dkl~  230 (323)
T KOG0322|consen  156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR-----GISGGADDKLV  230 (323)
T ss_pred             eeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC-----CcCCCccccce
Confidence            55432 233  46678899999999999874433322         123458899999876555     68888888999


Q ss_pred             EEeCCCc--e--eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeE
Q 016257          228 VYDISTW--N--KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV  303 (392)
Q Consensus       228 v~d~~~~--~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  303 (392)
                      .|++...  .  ...........+..+.+-||++.+|+++.|++||||+.++...+..+ ..| ...|++++|+|+...+
T Consensus       231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL-kyH-sagvn~vAfspd~~lm  308 (323)
T KOG0322|consen  231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL-KYH-SAGVNAVAFSPDCELM  308 (323)
T ss_pred             eeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh-hhh-hcceeEEEeCCCCchh
Confidence            9988643  1  12233334557888999999999999999999999999999998877 578 8999999999999999


Q ss_pred             EEEeCCCeEEEEEe
Q 016257          304 LTASKEWGAMITKL  317 (392)
Q Consensus       304 ~~~~~dg~i~iw~~  317 (392)
                      |+++.|+.|.+|++
T Consensus       309 AaaskD~rISLWkL  322 (323)
T KOG0322|consen  309 AAASKDARISLWKL  322 (323)
T ss_pred             hhccCCceEEeeec
Confidence            99999999999986

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.87  E-value=5.8e-18  Score=154.18  Aligned_cols=333  Identities=19%  Similarity=0.299  Sum_probs=233.4

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCC-CCeeEEEE-cCCCC-eEEE
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAV-NPSGD-DFVC   80 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~-sp~~~-~l~~   80 (392)
                      ...+.++.+.+.+..   +..++      .++.+.+|......       .....+.++. ..+..+.+ ++++. .++.
T Consensus        65 ~~~i~~~~~~~~~~~---~~~~~------~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (466)
T COG2319          65 EDSITSIAFSPDGEL---LLSGS------SDGTIKLWDLDNGE-------KLIKSLEGLHDSSVSKLALSSPDGNSILLA  128 (466)
T ss_pred             cceEEEEEECCCCcE---EEEec------CCCcEEEEEcCCCc-------eeEEEEeccCCCceeeEEEECCCcceEEec
Confidence            456888888887743   33322      36678888887432       1333444433 36777777 88887 4554


Q ss_pred             EeC-CCeEEEEEEeC-CccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCCceeecccCCCCcE
Q 016257           81 STT-NGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDEPKAHKSV  157 (392)
Q Consensus        81 ~~~-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~i  157 (392)
                      .+. |+.+.+|+... ........       .|...|..++|+|++..+++++. |+.+++|+...+.....+..|...+
T Consensus       129 ~~~~d~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  201 (466)
T COG2319         129 SSSLDGTVKLWDLSTPGKLIRTLE-------GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV  201 (466)
T ss_pred             cCCCCccEEEEEecCCCeEEEEEe-------cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCce
Confidence            444 89999999987 33222222       26778999999999998888885 9999999999877777777778899


Q ss_pred             EEEEecCCCC-eEEEEcCCCcEEEEECCCCeeeE-EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce
Q 016257          158 LDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (392)
Q Consensus       158 ~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~  235 (392)
                      .+++|+|++. .+++++.|+.+++||...+.... .+..+.. .. ...|+|++..     +++++.++.+++||.+...
T Consensus       202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~-----~~~~~~d~~~~~~~~~~~~  274 (466)
T COG2319         202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSL-----LASGSSDGTIRLWDLRSSS  274 (466)
T ss_pred             EEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCE-----EEEecCCCcEEEeeecCCC
Confidence            9999999998 55555899999999998777776 4554443 32 2389999954     5689999999999998766


Q ss_pred             e-eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee-ccccCcceEEEEEeeCCCeEEEE-eCCCeE
Q 016257          236 K-IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK-RLHLGTSIALVEFCPTQRVVLTA-SKEWGA  312 (392)
Q Consensus       236 ~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i  312 (392)
                      . ......|...+.++.|+|++..+++++.|+.+.+||..+........ ..| ...+..+.|.+++..++.+ ..|+.+
T Consensus       275 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~  353 (466)
T COG2319         275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGH-EGPVSSLSFSPDGSLLVSGGSDDGTI  353 (466)
T ss_pred             cEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeeccc-CCceEEEEECCCCCEEEEeecCCCcE
Confidence            4 33445668899999999988888889989889999998877665553 356 5579999994332455555 688999


Q ss_pred             EEEEeecCccccceeeeeeeeeeee-eceEEE-EeeecceeeeecccccccccCCCC
Q 016257          313 MITKLTVPADWKEWQIYSLLLALFL-ASAVVF-YIFFENSDSFWNFPVARNQHGGPK  367 (392)
Q Consensus       313 ~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~d~~i~~W~~~~~~~~~~~p~  367 (392)
                      .+|++.................... ...... ....++.+.+|+............
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (466)
T COG2319         354 RLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDG  410 (466)
T ss_pred             EeeecCCCceeEEecCCceEEEEEECCCCCEEEEecCCCceEEEecccCeeeeeccC
Confidence            9999986652111111100111111 111222 245788999999988776654444

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.87  E-value=2.4e-19  Score=146.36  Aligned_cols=242  Identities=18%  Similarity=0.184  Sum_probs=183.6

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC--CcEEEEe
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--GHLRIMH  140 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~i~d  140 (392)
                      ...+..+.|+.+...|..|+.|| .++|+.+.......       .......|--+-|+.  .++|..+.+  ..+++++
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~-------~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~   74 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS-------KDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVH   74 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhc-------ccCCCeEEEEeeccc--ceeEEEecCCCceEEEEE
Confidence            34566777999999999999999 88888766543111       111223455556654  366655543  4589999


Q ss_pred             CCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEe
Q 016257          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (392)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (392)
                      ++.+..+.... ...+|.++.++.  +.|+++-++ .|+|||+++.+.++++..-...+-..++++++...-++. .-.+
T Consensus        75 ~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylA-yp~s  149 (391)
T KOG2110|consen   75 FKKKTTICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLA-YPGS  149 (391)
T ss_pred             cccCceEEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEE-ecCC
Confidence            88777665443 345788888874  456666554 499999999999998876533344456666655432322 1234


Q ss_pred             CCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCc-EEEEecCCceeeeeeeccccCcceEEEEEeeC
Q 016257          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD-ICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (392)
Q Consensus       221 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  299 (392)
                      ...|.|.+||..+.+++..+..|++++.+++|+++|.+||++++.|+ ||++.+.+|+.+..+.++-....|.+++|+|+
T Consensus       150 ~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d  229 (391)
T KOG2110|consen  150 TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD  229 (391)
T ss_pred             CCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence            45799999999999999999999999999999999999999999998 79999999999999987765678999999999


Q ss_pred             CCeEEEEeCCCeEEEEEeec
Q 016257          300 QRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       300 ~~~l~~~~~dg~i~iw~~~~  319 (392)
                      +++|++.+..++|.++++..
T Consensus       230 s~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  230 SQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             CCeEEEecCCCeEEEEEecc
Confidence            99999999999999999974

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1.8e-21  Score=166.82  Aligned_cols=260  Identities=15%  Similarity=0.182  Sum_probs=190.7

Q ss_pred             ceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceee-ccccCCCCCCCCCeEEEEecCCCCEEEEEeC
Q 016257           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINL-LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (392)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  132 (392)
                      ....++..|.+.|+.++|+|....|++++.||.+.+|++......... .......-.|.++|.|++..++++.+++|+.
T Consensus       285 ~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~  364 (577)
T KOG0642|consen  285 NIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI  364 (577)
T ss_pred             ceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence            344578889999999999999999999999999999999432211111 1111122348999999999999999999999


Q ss_pred             CCcEEEEeCCCC----------ceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCC-CcceE
Q 016257          133 DGHLRIMHWPSL----------RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIE  201 (392)
Q Consensus       133 dg~i~i~d~~~~----------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~v~  201 (392)
                      ||+|+.|++...          .....+.+|.+.++.+++|+....|++++.||++++|+.....+ .++.... .+...
T Consensus       365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL  443 (577)
T ss_pred             CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence            999999976421          12234567888999999999999999999999999999876555 3332221 12334


Q ss_pred             EEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeeccc-------CCCcEEEEECCCCCEEEEEeCCCcEEEEecC
Q 016257          202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-------RKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (392)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  274 (392)
                      ++.+.......    .++....+.-.++++.....+..+...       ...+..+.++|.+.+.+++..|+.|+++|..
T Consensus       444 svd~~ss~~a~----~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~  519 (577)
T KOG0642|consen  444 SVDRTSSRPAH----SLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK  519 (577)
T ss_pred             eEeeccchhHh----hhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence            55554433210    233333333444454444333322211       2356678899999999999999999999999


Q ss_pred             CceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257          275 KMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       275 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      +++.+... ..| ...++++++.|+|.+|++++.|+.+++|++..+
T Consensus       520 ~~~~l~s~-~a~-~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  520 TGKILHSM-VAH-KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             ccccchhe-eec-cceecceeecCCCceEEeecCCceeehhhccch
Confidence            99988876 577 889999999999999999999999999998644

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.87  E-value=7.6e-20  Score=146.92  Aligned_cols=288  Identities=15%  Similarity=0.162  Sum_probs=201.4

Q ss_pred             EeeCCCCCeeEEEEcC----CC-CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC----CCEEE
Q 016257           58 VFDESEGDPMTIAVNP----SG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD----GSRFA  128 (392)
Q Consensus        58 ~~~~h~~~v~~~~~sp----~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~  128 (392)
                      ....|..+|..++|++    +. +.+++++ ..++.+|+.........+..  .....+......++|+-+    ..++|
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~--y~D~d~~Esfytcsw~yd~~~~~p~la  109 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQS--YADEDHDESFYTCSWSYDSNTGNPFLA  109 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeee--ccCCCCCcceEEEEEEecCCCCCeeEE
Confidence            3567889999999985    22 3455554 44599999876652222221  122246667788888653    34788


Q ss_pred             EEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCC-CeEEEEcCCCcEEEEECCCCeeeEEEec--CCCcceEEEEe
Q 016257          129 AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTR--NSDEKIELCRF  205 (392)
Q Consensus       129 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~  205 (392)
                      +|+.-|.|+|.|+.+++....+.+|...|..+.++|+. +++++++.|.+|++|++++..++..+-+  .|...|.++.|
T Consensus       110 ~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~  189 (385)
T KOG1034|consen  110 AGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF  189 (385)
T ss_pred             eecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence            88999999999999999998889998999999999965 7899999999999999999999988843  45568999999


Q ss_pred             cCCCCcceEEEEEEeCCccEEEEEeCCCceeee----------------------------eecccCCCcEEEEECCCCC
Q 016257          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG----------------------------HKRLLRKPASVLSISLDGK  257 (392)
Q Consensus       206 ~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~----------------------------~~~~~~~~v~~~~~s~~~~  257 (392)
                      ++++.+     +++++.|.+|++|++...+...                            +...|...|.|+.|-  |.
T Consensus       190 ~~~gd~-----i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd  262 (385)
T KOG1034|consen  190 SLDGDR-----IASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GD  262 (385)
T ss_pred             cCCCCe-----eeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hh
Confidence            999997     8999999999999998432110                            111233344444443  57


Q ss_pred             EEEEEeCCCcEEEEecC-Cceeeeee------------eccccCcceEEEEE--eeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257          258 YLAMGSKDGDICVVDVK-KMEINHWS------------KRLHLGTSIALVEF--CPTQRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       258 ~l~~~~~dg~i~iwd~~-~~~~~~~~------------~~~~~~~~i~~~~~--s~~~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                      ++++=+-++.|..|... -.+.....            .... ...|+-+.|  .|-+++||.|...|.+.+|+++...+
T Consensus       263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~-~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep  341 (385)
T KOG1034|consen  263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP-MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP  341 (385)
T ss_pred             heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC-ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence            88888888999999762 11111100            0111 445666655  45678999999999999999986655


Q ss_pred             ccceeeeeee-------eeeeeeceEEEEeeecceeeeecc
Q 016257          323 WKEWQIYSLL-------LALFLASAVVFYIFFENSDSFWNF  356 (392)
Q Consensus       323 ~~~~~~~~~~-------~~~~~~~~~~~~~~~d~~i~~W~~  356 (392)
                      .....+..+.       ..+.-....+++...|+.|-=||.
T Consensus       342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             ccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            3322222211       122224446666777888777764

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.3e-20  Score=153.35  Aligned_cols=263  Identities=13%  Similarity=0.058  Sum_probs=194.0

Q ss_pred             CCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe
Q 016257           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (392)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  131 (392)
                      .+.+...+.+|.+.|+++.|+.++++|++|+.|..+++|++...-............-.|.+.|.|++|.....++++|.
T Consensus        45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~  124 (609)
T KOG4227|consen   45 RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE  124 (609)
T ss_pred             cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC
Confidence            45566678899999999999999999999999999999998654322211111222334678999999999999999999


Q ss_pred             CCCcEEEEeCCCCceeecccCC--CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCe-eeEE-EecCCCcceEEEEecC
Q 016257          132 VDGHLRIMHWPSLRIILDEPKA--HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTF-LTRNSDEKIELCRFSK  207 (392)
Q Consensus       132 ~dg~i~i~d~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~-~~~~~~~~v~~~~~~~  207 (392)
                      .+++|...|+++.+.+......  .+.|+.+..+|..+.|++.+.++.|.+||.+... +... +........+.+.|+|
T Consensus       125 ~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P  204 (609)
T KOG4227|consen  125 RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP  204 (609)
T ss_pred             CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence            9999999999998876544322  2389999999999999999999999999998765 2222 2233445688999999


Q ss_pred             CCCcceEEEEEEeCCccEEEEEeCCCceee-eee---cccC---CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeee
Q 016257          208 DGTKPFLFCTVQRGDKALLAVYDISTWNKI-GHK---RLLR---KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH  280 (392)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~-~~~---~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  280 (392)
                      ....+    +++.+..+-+-+||.+..... ...   ....   ..-..+.|+|+|..|.+--....-.+||+-+..+..
T Consensus       205 ~~P~L----i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V  280 (609)
T KOG4227|consen  205 ETPAL----ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFV  280 (609)
T ss_pred             CCcee----EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccccee
Confidence            98863    677788888999999865432 111   1111   122467899999988877665666788887755433


Q ss_pred             eeecccc------CcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257          281 WSKRLHL------GTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       281 ~~~~~~~------~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      .. ..|.      ...+.+++|..|- .+++|+.+-.|++|.+...
T Consensus       281 ~k-~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~  324 (609)
T KOG4227|consen  281 LK-SDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRA  324 (609)
T ss_pred             Ee-ccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCC
Confidence            22 2321      2357788887664 4999999999999999743

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.87  E-value=2.5e-19  Score=160.82  Aligned_cols=297  Identities=12%  Similarity=0.112  Sum_probs=203.2

Q ss_pred             ceeeeecCCCCCc--ceeEEEeCCCCC---------CCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC
Q 016257            5 GTVTCGSWIKRPE--NVNLVVLGKSSR---------ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP   73 (392)
Q Consensus         5 ~~v~~~~w~~~~~--~~~~~~~g~~~~---------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp   73 (392)
                      -.+++++|.|++.  ....+++.....         ....+..+.+|+++...     .|.  ..+. -...|+++.|+|
T Consensus       181 ~~~~~~~w~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p~-----~Pe--~~~~-~~s~v~~~~f~p  252 (555)
T KOG1587|consen  181 RQVTDESWHPTGSVLIAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNPN-----TPE--LVLE-SPSEVTCLKFCP  252 (555)
T ss_pred             cceeeeeeccCCCcceEEEEeecccccccccccccccccCCceEEEEecCCCC-----Cce--EEEe-cCCceeEEEecc
Confidence            3578888988775  212222222111         01112357777776331     222  2233 367899999999


Q ss_pred             -CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCC--EEEEEeCCCcEEEEeCCCCceee--
Q 016257           74 -SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS--RFAAGGVDGHLRIMHWPSLRIIL--  148 (392)
Q Consensus        74 -~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~i~d~~~~~~~~--  148 (392)
                       +..+++.|..+|.|.+||+..+..... .........|..++..+.|..+..  -+++++.||.|..|+++.-....  
T Consensus       253 ~~p~ll~gG~y~GqV~lWD~~~~~~~~~-s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~  331 (555)
T KOG1587|consen  253 FDPNLLAGGCYNGQVVLWDLRKGSDTPP-SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEG  331 (555)
T ss_pred             CCcceEEeeccCceEEEEEccCCCCCCC-cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhh
Confidence             556788889999999999988764211 111223345889999999977544  49999999999999886433211  


Q ss_pred             ---cccC-------CCCcEEEEEecC-CCCeEEEEcCCCcEEEEECCCCee--------eEEEecCCCcceEEEEecCCC
Q 016257          149 ---DEPK-------AHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVA--------WTFLTRNSDEKIELCRFSKDG  209 (392)
Q Consensus       149 ---~~~~-------~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~  209 (392)
                         ....       ....+++++|.+ +-..++.|+++|.|.--.-...+.        ...+. .+.++|+++.++|-+
T Consensus       332 ~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~-~h~g~v~~v~~nPF~  410 (555)
T KOG1587|consen  332 LLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFI-THIGPVYAVSRNPFY  410 (555)
T ss_pred             cccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccc-ccCcceEeeecCCCc
Confidence               1111       123689999988 556799999999887733222111        11222 245689999999998


Q ss_pred             CcceEEEEEEeCCccEEEEEeCC-CceeeeeecccCCCcEEEEECCCC-CEEEEEeCCCcEEEEecCCcee--eeeeecc
Q 016257          210 TKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEI--NHWSKRL  285 (392)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~  285 (392)
                      ..+     +.++.|..+++|... ...++..+..+...+++++|||-. ..|+++..||.|.+||+.....  .... ..
T Consensus       411 ~k~-----fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~-~~  484 (555)
T KOG1587|consen  411 PKN-----FLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ-KV  484 (555)
T ss_pred             cce-----eeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccc-cc
Confidence            873     333339999999988 666777777777779999999975 6688888899999999976432  2222 22


Q ss_pred             ccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       286 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      + ....+.+.|+++|+.|++|...|.+.++++.
T Consensus       485 ~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  485 C-SPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             c-ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            3 5677888899999999999999999999996

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=8.9e-19  Score=135.20  Aligned_cols=283  Identities=11%  Similarity=0.074  Sum_probs=192.5

Q ss_pred             eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCC--CCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC
Q 016257            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPK--TTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (392)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d   84 (392)
                      |+.-+|+|..+   +++.|..      .+.|.++.+...  ....+........+++|+++|+.++|+  .++|++|+ |
T Consensus        13 vf~qa~sp~~~---~l~agn~------~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-d   80 (325)
T KOG0649|consen   13 VFAQAISPSKQ---YLFAGNL------FGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-D   80 (325)
T ss_pred             HHHHhhCCcce---EEEEecC------CCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-C
Confidence            56678999774   4554544      566888888632  222222344555668999999999998  34677764 5


Q ss_pred             CeEEEEEEeCCccc---eeeccccCCC---CCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEE
Q 016257           85 GGCKLFEVYGGATD---INLLAKKMPP---LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL  158 (392)
Q Consensus        85 ~~i~iw~~~~~~~~---~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~  158 (392)
                      |.|+-|........   ..+.....+.   .-.-..|+++...|..+-++.++.|+.++-||+++|+....+.+|.+.|.
T Consensus        81 G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH  160 (325)
T KOG0649|consen   81 GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH  160 (325)
T ss_pred             ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee
Confidence            99999987544321   1111111000   11224689999999777777777899999999999999999999999999


Q ss_pred             EEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCC---------CcceEEEEecCCCCcceEEEEEEeCCccEEEEE
Q 016257          159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (392)
Q Consensus       159 ~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~  229 (392)
                      ++.--.....+++|++||++++||.++++++..+....         ...|.+++-+  ..+      +.++....+.+|
T Consensus       161 ~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edW------lvCGgGp~lslw  232 (325)
T KOG0649|consen  161 SVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDW------LVCGGGPKLSLW  232 (325)
T ss_pred             eeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--Cce------EEecCCCceeEE
Confidence            99886666689999999999999999999988875322         2234444443  343      556667789999


Q ss_pred             eCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCC-CeEEEEeC
Q 016257          230 DISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ-RVVLTASK  308 (392)
Q Consensus       230 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~  308 (392)
                      .+++.++...+.. ...+..+.|..  +.++++++.+.|.-|.+. |.+...+...  ....++..|+..- ++|-.++.
T Consensus       233 hLrsse~t~vfpi-pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~--s~~c~s~s~~~~p~k~~s~ag~  306 (325)
T KOG0649|consen  233 HLRSSESTCVFPI-PARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVE--STACYSASWQTSPIKFISIAGF  306 (325)
T ss_pred             eccCCCceEEEec-ccceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCC--ccceeeecccCCceEEEEeccc
Confidence            9999888766654 56777888854  477788877889999875 3333333222  2345555554332 35556666


Q ss_pred             CCeEEEE
Q 016257          309 EWGAMIT  315 (392)
Q Consensus       309 dg~i~iw  315 (392)
                      .+.+.|+
T Consensus       307 s~~~~i~  313 (325)
T KOG0649|consen  307 SNKLHIL  313 (325)
T ss_pred             ceeeeee
Confidence            6666654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.8e-20  Score=149.41  Aligned_cols=271  Identities=14%  Similarity=0.133  Sum_probs=188.5

Q ss_pred             CCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC--CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCC
Q 016257           31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP  108 (392)
Q Consensus        31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~  108 (392)
                      +-+.+.+++|+..        +......+++|...++.++|..  ....+.+++.||+|++||++.......+.....  
T Consensus        46 ~lSngsv~lyd~~--------tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~--  115 (376)
T KOG1188|consen   46 SLSNGSVRLYDKG--------TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ--  115 (376)
T ss_pred             EecCCeEEEEecc--------chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC--
Confidence            3456779999887        3344456899999999999976  456788999999999999998775554443221  


Q ss_pred             CCCCCCeEEEEecCCCCEEEEEeC----CCcEEEEeCCCCce-eeccc-CCCCcEEEEEecC-CCCeEEEEcCCCcEEEE
Q 016257          109 LQDAGPQKCLSFSVDGSRFAAGGV----DGHLRIMHWPSLRI-ILDEP-KAHKSVLDMDFSL-DSEFLATTSTDGSARIW  181 (392)
Q Consensus       109 ~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~~-~~~~~-~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vw  181 (392)
                        ...+..+++.+.+++.+++|..    +-.|.+||++..++ +..+. .|+..|+++.|+| +.++|++|+.||-|.+|
T Consensus       116 --~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlf  193 (376)
T KOG1188|consen  116 --SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLF  193 (376)
T ss_pred             --CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEee
Confidence              1346778888778888888863    56799999998776 44443 4667999999999 56799999999999999


Q ss_pred             ECCCCeeeEEEe--cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCC----------CcEE
Q 016257          182 KTEDGVAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK----------PASV  249 (392)
Q Consensus       182 d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~----------~v~~  249 (392)
                      |+.....-..+.  ..+...|.++.|..++-..    +.+-+......+|+++.+.+...+....-          --.-
T Consensus       194 D~~~d~EeDaL~~viN~~sSI~~igw~~~~ykr----I~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~  269 (376)
T KOG1188|consen  194 DTKKDNEEDALLHVINHGSSIHLIGWLSKKYKR----IMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYV  269 (376)
T ss_pred             ecCCCcchhhHHHhhcccceeeeeeeecCCcce----EEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence            997543211111  1234469999999887321    45556678899999998775443332210          0001


Q ss_pred             E-EECC-CCCEEEEEeC-CCcEEEEecC---Cc---eeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          250 L-SISL-DGKYLAMGSK-DGDICVVDVK---KM---EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       250 ~-~~s~-~~~~l~~~~~-dg~i~iwd~~---~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      + ..+| ++..++.++. -++..++-+.   ++   +.+..+..+| ..-|.++.|...+.++.+|++||.+.+|...
T Consensus       270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~-~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGH-EEIVRDILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCc-HHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence            1 1223 3455555544 4566655443   22   3344444446 7789999999888999999999999999963

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.86  E-value=1.8e-19  Score=148.11  Aligned_cols=206  Identities=14%  Similarity=0.183  Sum_probs=166.1

Q ss_pred             CCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCC-------ceeecccCCCCcEEEEEecCC-CCeEEEEcCCCcEE
Q 016257          109 LQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSL-------RIILDEPKAHKSVLDMDFSLD-SEFLATTSTDGSAR  179 (392)
Q Consensus       109 ~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~  179 (392)
                      ..|.++|..++|+| +.+.||+|++|.+|.||++..+       +.+..+.+|...|--++|+|. .+.|++++.|.+|.
T Consensus        78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~  157 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVS  157 (472)
T ss_pred             cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEE
Confidence            35899999999999 6778999999999999998644       345566788889999999994 46789999999999


Q ss_pred             EEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCC-CcEEEEECCCCCE
Q 016257          180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISLDGKY  258 (392)
Q Consensus       180 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~  258 (392)
                      +|++.+++.+.++.  |...|.++.|+.+|..     +++.+.|..|+|||.++++.+..-..|.+ .-..+.|-.+|.+
T Consensus       158 iWnv~tgeali~l~--hpd~i~S~sfn~dGs~-----l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i  230 (472)
T KOG0303|consen  158 IWNVGTGEALITLD--HPDMVYSMSFNRDGSL-----LCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKI  230 (472)
T ss_pred             EEeccCCceeeecC--CCCeEEEEEeccCCce-----eeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCce
Confidence            99999999888877  5568999999999998     89999999999999999999887766654 3445667778886


Q ss_pred             EEEEe---CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEE-EEeCCCeEEEEEeecCc
Q 016257          259 LAMGS---KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL-TASKEWGAMITKLTVPA  321 (392)
Q Consensus       259 l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~  321 (392)
                      +.+|-   .+..+-+||....+....+........|.---|.+|..+++ +|-.|+.||-|.+....
T Consensus       231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            65554   46789999987765443333333366788788889888665 55579999999997554

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.1e-18  Score=157.29  Aligned_cols=292  Identities=16%  Similarity=0.221  Sum_probs=206.6

Q ss_pred             eCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCC-ccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEE
Q 016257           60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG-ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (392)
Q Consensus        60 ~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  138 (392)
                      ..|.-.+++.++||+++++|+|..||+|.+|.--.. ........-+    =|...|.+++|+++|.+|++|+..+.+.+
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH----WH~~~V~~L~fS~~G~~LlSGG~E~VLv~  277 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH----WHHDEVNSLSFSSDGAYLLSGGREGVLVL  277 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEE----ecccccceeEEecCCceEeecccceEEEE
Confidence            346777999999999999999999999999975441 1111110000    16789999999999999999999999999


Q ss_pred             EeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecC----------CCcceEEEEecCC
Q 016257          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN----------SDEKIELCRFSKD  208 (392)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~----------~~~~v~~~~~~~~  208 (392)
                      |.+++++ ..-++.-..+|..+.++||+.+.+....|..|.+....+.....++.+.          ...-.+.++++|.
T Consensus       278 Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr  356 (792)
T KOG1963|consen  278 WQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR  356 (792)
T ss_pred             EeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC
Confidence            9999988 3345566679999999999999999999999999987655443333221          2234567889995


Q ss_pred             CCcceEEEEEEeCCccEEEEEeCCCceeeeeecc-----------cCCCcEEEEECCCCCEEEEEeC--------CC--c
Q 016257          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-----------LRKPASVLSISLDGKYLAMGSK--------DG--D  267 (392)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~~--------dg--~  267 (392)
                      .+.     ++..+..+.|.+||+-+.+.+..+..           +.-.++.++.+..|.+++|.-.        ||  .
T Consensus       357 ~~~-----~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~  431 (792)
T KOG1963|consen  357 TNS-----LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS  431 (792)
T ss_pred             CCc-----eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEE
Confidence            554     68888999999999987765544321           1224677788888999998642        32  4


Q ss_pred             EEEEecCC----ceeeeeeeccccCcceEEEEE-eeCCC-eEEEEeCCCeEEEEEeecCccc----cceeee--------
Q 016257          268 ICVVDVKK----MEINHWSKRLHLGTSIALVEF-CPTQR-VVLTASKEWGAMITKLTVPADW----KEWQIY--------  329 (392)
Q Consensus       268 i~iwd~~~----~~~~~~~~~~~~~~~i~~~~~-s~~~~-~l~~~~~dg~i~iw~~~~~~~~----~~~~~~--------  329 (392)
                      +++|-...    ..+...+...| +..+...++ ++... ..++++.||.+++|-+......    ..|..-        
T Consensus       432 LKFW~~n~~~kt~~L~T~I~~PH-~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~  510 (792)
T KOG1963|consen  432 LKFWQYNPNSKTFILNTKINNPH-GNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKT  510 (792)
T ss_pred             EEEEEEcCCcceeEEEEEEecCC-CceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccC
Confidence            78896543    34455556678 444444444 44444 8999999999999999533221    233211        


Q ss_pred             eeeeeeeeeceEEEEeeecceeeeecccccccc
Q 016257          330 SLLLALFLASAVVFYIFFENSDSFWNFPVARNQ  362 (392)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~  362 (392)
                      ..-...+...+.+++.++++.|.+||..+.+.+
T Consensus       511 ~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l  543 (792)
T KOG1963|consen  511 PITALCFSQDGSLLAVSFDDTITIWDYDTKNEL  543 (792)
T ss_pred             cccchhhcCCCcEEEEecCCEEEEecCCChhhh
Confidence            111222334558889999999999999885443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.86  E-value=6e-18  Score=154.04  Aligned_cols=289  Identities=21%  Similarity=0.299  Sum_probs=217.0

Q ss_pred             EeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCc-cceeeccccCCCCCCCCCeEEEEe-cCCCC-EEEEEeC-C
Q 016257           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA-TDINLLAKKMPPLQDAGPQKCLSF-SVDGS-RFAAGGV-D  133 (392)
Q Consensus        58 ~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~-~l~~~~~-d  133 (392)
                      .+..|...+.++.+.+.+..++.++.|+.+.+|+..... ....+....      ...+..+.+ ++++. .++..+. |
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~d  133 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLH------DSSVSKLALSSPDGNSILLASSSLD  133 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccC------CCceeeEEEECCCcceEEeccCCCC
Confidence            466789999999999999999999999999999998775 222222211      135666666 78777 5555444 8


Q ss_pred             CcEEEEeCCC-CceeecccCCCCcEEEEEecCCCCeEEEEcC-CCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCc
Q 016257          134 GHLRIMHWPS-LRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (392)
Q Consensus       134 g~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (392)
                      +.+.+|+... .........|...|..++|+|+++.+++++. |+.+++|++..++.+..+..+ ...+.+++|+|++..
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~  212 (466)
T COG2319         134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH-TDPVSSLAFSPDGGL  212 (466)
T ss_pred             ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC-CCceEEEEEcCCcce
Confidence            9999999987 6677777888889999999999998888885 999999999987777777764 457999999999872


Q ss_pred             ceEEEEEEeCCccEEEEEeCCCceeee-eecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCcee-eeeeeccccCc
Q 016257          212 PFLFCTVQRGDKALLAVYDISTWNKIG-HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI-NHWSKRLHLGT  289 (392)
Q Consensus       212 ~~~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~  289 (392)
                          .+++++.|+.+.+||...+.... .+..|.... ...|+|++.++++++.|+.+++|+++.... .... ..| ..
T Consensus       213 ----~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~-~~  285 (466)
T COG2319         213 ----LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGH-SS  285 (466)
T ss_pred             ----EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecC-Cc
Confidence                14455899999999998777766 566666664 348999998999999999999999987664 3333 567 88


Q ss_pred             ceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccccee---eeeeeeeee-eec-eEEEEe-eecceeeeecccccc
Q 016257          290 SIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQ---IYSLLLALF-LAS-AVVFYI-FFENSDSFWNFPVAR  360 (392)
Q Consensus       290 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~-~~~-~~~~~~-~~d~~i~~W~~~~~~  360 (392)
                      .+.++.|+|++..+++++.|+.+++|++..........   ......... ... ..+..+ ..|+.+++|+.....
T Consensus       286 ~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            99999999988888889999999999877554322221   000011111 111 233333 467889999988776

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.85  E-value=3.6e-19  Score=146.89  Aligned_cols=290  Identities=14%  Similarity=0.136  Sum_probs=190.8

Q ss_pred             CCCeeEEEEcCCCC-eEEEEeCCCeEEEEEEeCCcccee--eccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 016257           63 EGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDIN--LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (392)
Q Consensus        63 ~~~v~~~~~sp~~~-~l~~~~~d~~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~  139 (392)
                      ..+|..+.|.++.. .|++|+.|..|++|.+........  ...-....-.|...|+++.|+|+|++|++|+.+|.+.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            46899999999776 999999999999999977654331  111111223588999999999999999999999999999


Q ss_pred             eCC--------C--------CceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEE
Q 016257          140 HWP--------S--------LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELC  203 (392)
Q Consensus       140 d~~--------~--------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~  203 (392)
                      -..        +        .........|...|+.++|+|++.++++++.|..+++||+..++....+..|. ..+..+
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~-~yvqgv  171 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHE-HYVQGV  171 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccc-ccccee
Confidence            765        2        11223345566789999999999999999999999999999999988887654 479999


Q ss_pred             EecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec-------------------ccC----CCcEEEEECCCCCEEE
Q 016257          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-------------------LLR----KPASVLSISLDGKYLA  260 (392)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-------------------~~~----~~v~~~~~s~~~~~l~  260 (392)
                      +|.|-+++     +++-+.|...+.+.+...+.+....                   .|+    .-...++|+|+|.+++
T Consensus       172 awDpl~qy-----v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv  246 (434)
T KOG1009|consen  172 AWDPLNQY-----VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV  246 (434)
T ss_pred             ecchhhhh-----hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE
Confidence            99999987     6666667666666654332211110                   011    1133578999999998


Q ss_pred             EEeC----CC-----cEEEEecCCceeeeeeeccccCcceEEEEEee------------------CCCeEEEEeCCCeEE
Q 016257          261 MGSK----DG-----DICVVDVKKMEINHWSKRLHLGTSIALVEFCP------------------TQRVVLTASKEWGAM  313 (392)
Q Consensus       261 ~~~~----dg-----~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~------------------~~~~l~~~~~dg~i~  313 (392)
                      +.+.    .+     ..++|+-+..+.+....... ..+...+.|+|                  .+-.++.++.+ .+.
T Consensus       247 tPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~-~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svy  324 (434)
T KOG1009|consen  247 TPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP-KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVY  324 (434)
T ss_pred             cccceeeeCCceeeceeEeeccccccCceeecCCC-CcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEE
Confidence            8642    22     23555444322221111222 34445555554                  23345555555 999


Q ss_pred             EEEeecCccccce-eeee---eeeeeeeeceEEEEeeecceeeeecccccc
Q 016257          314 ITKLTVPADWKEW-QIYS---LLLALFLASAVVFYIFFENSDSFWNFPVAR  360 (392)
Q Consensus       314 iw~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~  360 (392)
                      +||.+...++... .+-+   ...+.......++..+.||-..+-.++..+
T Consensus       325 vydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  325 VYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE  375 (434)
T ss_pred             EeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence            9999876665432 1111   112222234466666678766655555443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2e-18  Score=133.27  Aligned_cols=238  Identities=16%  Similarity=0.188  Sum_probs=177.7

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccc---cCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEe
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK---KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d  140 (392)
                      ..|.+-+++|.+++|++|+.+|.|.++.+++..........   ..+...|.++++.++|.  ..+|++|+ ||.|+-|.
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence            35677789999999999999999999998754322211111   12224589999999998  34677765 69999998


Q ss_pred             CCCCce------eecc--cCC-----CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEe-c
Q 016257          141 WPSLRI------ILDE--PKA-----HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF-S  206 (392)
Q Consensus       141 ~~~~~~------~~~~--~~~-----~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~-~  206 (392)
                      .+....      ..+.  +.+     -..|+++...|..+-++.++.|+.++-||+++|+..+++.+|.+ .+.+++- +
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD-YvH~vv~R~  166 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD-YVHSVVGRN  166 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc-eeeeeeecc
Confidence            754322      1111  111     12689999999888888888999999999999999999998866 7999988 4


Q ss_pred             CCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC----------CCcEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 016257          207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR----------KPASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (392)
Q Consensus       207 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  276 (392)
                      .+++      +++|++||++++||.++++.+..+...+          ..|-+++  -+..++++|+. ..+.+|++++.
T Consensus       167 ~~~q------ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgG-p~lslwhLrss  237 (325)
T KOG0649|consen  167 ANGQ------ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGG-PKLSLWHLRSS  237 (325)
T ss_pred             cCcc------eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCC-CceeEEeccCC
Confidence            4455      7999999999999999999877664322          2344444  45668888764 56999999999


Q ss_pred             eeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          277 EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       277 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      +....+..   ..++..+.|..|  .+++++..+.+.-|.+..
T Consensus       238 e~t~vfpi---pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  238 ESTCVFPI---PARVHLVDFVDD--CVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             CceEEEec---ccceeEeeeecc--eEEEeccccceeeeeecc
Confidence            88877743   568889999654  788888888999998863

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.85  E-value=4.4e-19  Score=142.17  Aligned_cols=228  Identities=15%  Similarity=0.208  Sum_probs=167.6

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      -.||+|.+|++|.+.   ++++..      .+.+.||......     .....++++.|...|++++|+|..+.|++++.
T Consensus        10 ~~pitchAwn~drt~---iAv~~~------~~evhiy~~~~~~-----~w~~~htls~Hd~~vtgvdWap~snrIvtcs~   75 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQ---IAVSPN------NHEVHIYSMLGAD-----LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH   75 (361)
T ss_pred             cCceeeeeecCCCce---EEeccC------CceEEEEEecCCC-----CceeceehhhhCcceeEEeecCCCCceeEccC
Confidence            469999999999854   443333      4568888876442     24556789999999999999999999999999


Q ss_pred             CCeEEEEEEe-CCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee----ecccCCCCcEE
Q 016257           84 NGGCKLFEVY-GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII----LDEPKAHKSVL  158 (392)
Q Consensus        84 d~~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~i~  158 (392)
                      |..-++|... .++-...     ...+.++...+++.|+|.+++|++|+.-..|.||-++...--    ..-......|.
T Consensus        76 drnayVw~~~~~~~Wkpt-----lvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~  150 (361)
T KOG1523|consen   76 DRNAYVWTQPSGGTWKPT-----LVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT  150 (361)
T ss_pred             CCCccccccCCCCeeccc-----eeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence            9999999984 3332222     222347789999999999999999999999999987654321    11123345799


Q ss_pred             EEEecCCCCeEEEEcCCCcEEEEECC-----C-------------CeeeEEEecCCCcceEEEEecCCCCcceEEEEEEe
Q 016257          159 DMDFSLDSEFLATTSTDGSARIWKTE-----D-------------GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (392)
Q Consensus       159 ~i~~~~~~~~l~~~~~d~~i~vwd~~-----~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (392)
                      +++|+|++-+|+.|+.|+..++|..-     .             |+.+..+. ...+.+..+.|+|+|..     ++-.
T Consensus       151 sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~-----lawv  224 (361)
T KOG1523|consen  151 SLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNR-----LAWV  224 (361)
T ss_pred             eeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCE-----eeEe
Confidence            99999999999999999999999642     1             11122221 34558999999999998     7888


Q ss_pred             CCccEEEEEeCCCce-eeeeecccCCCcEEEEECCCC
Q 016257          221 GDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDG  256 (392)
Q Consensus       221 ~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~s~~~  256 (392)
                      +.|..+.+-|..... .+.......-+..++.|-.+.
T Consensus       225 ~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~  261 (361)
T KOG1523|consen  225 GHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN  261 (361)
T ss_pred             cCCCceEEeecCCCchhccchhhccCCceeeEeecCC
Confidence            899999999987654 233333334567777775443

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=3.6e-20  Score=158.86  Aligned_cols=262  Identities=15%  Similarity=0.149  Sum_probs=186.6

Q ss_pred             eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 016257            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (392)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~   86 (392)
                      |+.++|+|-..   .+++++      .++++.+|.++.....-...-....+|.+|.++|.|++..+++..+++|+-||+
T Consensus       297 ir~l~~~~sep---~lit~s------ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  297 IRALAFHPSEP---VLITAS------EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             hhhhhcCCCCC---eEEEec------cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            56677777653   344444      478899999954333333344566789999999999999999999999999999


Q ss_pred             EEEEEEeCCccceeec---cccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee-ecccCCCCcEEEEEe
Q 016257           87 CKLFEVYGGATDINLL---AKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEPKAHKSVLDMDF  162 (392)
Q Consensus        87 i~iw~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~i~~  162 (392)
                      |+.|++....-.....   ........|.+.|+.+++|+....|++++.||+++.|+....... ......++.-.++++
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~  447 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR  447 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence            9999886332211111   111223458899999999999889999999999999998665551 112222334556666


Q ss_pred             cCCC-CeEEEEcCCCcEEEEECCCCeeeEEEecC------CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce
Q 016257          163 SLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRN------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (392)
Q Consensus       163 ~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~  235 (392)
                      -... ...++...-+.-.++++........+...      ....+..+.++|....     .+++.+++.|+++|..+++
T Consensus       448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~-----~~~~hed~~Ir~~dn~~~~  522 (577)
T KOG0642|consen  448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADI-----TFTAHEDRSIRFFDNKTGK  522 (577)
T ss_pred             ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCe-----eEecccCCceecccccccc
Confidence            4332 22233323333344444444444333221      1124677888998875     7899999999999999999


Q ss_pred             eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee
Q 016257          236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (392)
Q Consensus       236 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  282 (392)
                      .+.....|...++++++.|+|-+|++++.|+.+++|.+....+....
T Consensus       523 ~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es  569 (577)
T KOG0642|consen  523 ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES  569 (577)
T ss_pred             cchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence            99999999999999999999999999999999999998776655433

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=5.3e-18  Score=138.21  Aligned_cols=289  Identities=17%  Similarity=0.176  Sum_probs=185.1

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEee-CCCCCeeEEEEcCCC-CeEEEEeC
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEGDPMTIAVNPSG-DDFVCSTT   83 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~-~~l~~~~~   83 (392)
                      -++-++|+++--  .+++       ++.|..|++|+-....     .    ..++ ..+..|+|++|-|.+ ..|+.|+.
T Consensus       100 dlr~~aWhqH~~--~fav-------a~nddvVriy~ksst~-----p----t~Lks~sQrnvtclawRPlsaselavgCr  161 (445)
T KOG2139|consen  100 DLRGVAWHQHII--AFAV-------ATNDDVVRIYDKSSTC-----P----TKLKSVSQRNVTCLAWRPLSASELAVGCR  161 (445)
T ss_pred             ceeeEeechhhh--hhhh-------hccCcEEEEeccCCCC-----C----ceecchhhcceeEEEeccCCcceeeeeec
Confidence            356789998542  2333       3346778887654311     1    1122 135689999999954 57888888


Q ss_pred             CCeEEEEEEeCCccceee----ccccCCCC--CCCCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCCceeecccCCCCc
Q 016257           84 NGGCKLFEVYGGATDINL----LAKKMPPL--QDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDEPKAHKS  156 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~----~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~  156 (392)
                      .| |.+|...........    .......+  ..+.+|+++.|++||..+++++. |..|+|||..++..+.-....-+.
T Consensus       162 ~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg  240 (445)
T KOG2139|consen  162 AG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGG  240 (445)
T ss_pred             ce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCc
Confidence            88 999987543221111    11111111  13468999999999999999875 678999999998876555556678


Q ss_pred             EEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce-
Q 016257          157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-  235 (392)
Q Consensus       157 i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-  235 (392)
                      ++-+.||||+.+|++++-|+..++|...............+ .|...+|+|+|..++    ++.+....++-....... 
T Consensus       241 ~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLL----f~~sgsp~lysl~f~~~~~  315 (445)
T KOG2139|consen  241 FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLL----FACSGSPRLYSLTFDGEDS  315 (445)
T ss_pred             eeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC-ceeeeeecCCCCEEE----EEEcCCceEEEEeecCCCc
Confidence            99999999999999999999999996544333333333333 799999999999743    333333333222111100 


Q ss_pred             ---------e---eee---------ecccCCCcEEEEECCCCCEEEEEeCCC--------cEEEEecCCceeeeeeeccc
Q 016257          236 ---------K---IGH---------KRLLRKPASVLSISLDGKYLAMGSKDG--------DICVVDVKKMEINHWSKRLH  286 (392)
Q Consensus       236 ---------~---~~~---------~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~iwd~~~~~~~~~~~~~~  286 (392)
                               .   +..         .+...++..+++|.|.|.+||+.-..+        .|.+||.+.........-+-
T Consensus       316 ~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~  395 (445)
T KOG2139|consen  316 VFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGM  395 (445)
T ss_pred             cccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEeccc
Confidence                     0   000         011246788999999999999876543        47778877655444332111


Q ss_pred             -cCcceEEEEEee---CCCeEEEEeCCCeEEEEEee
Q 016257          287 -LGTSIALVEFCP---TQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       287 -~~~~i~~~~~s~---~~~~l~~~~~dg~i~iw~~~  318 (392)
                       .......++|+|   ++.+|..+=..|.+.-|.+.
T Consensus       396 i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  396 IGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             ccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence             023355677776   56677777778888877765

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.83  E-value=2.1e-18  Score=155.81  Aligned_cols=220  Identities=18%  Similarity=0.165  Sum_probs=149.9

Q ss_pred             EeeCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CC
Q 016257           58 VFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VD  133 (392)
Q Consensus        58 ~~~~h~~~v~~~~~sp~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d  133 (392)
                      .+..|...+..+.|+|||+.|+.++.+   ..|++||+.+++... +..       ..+....++|+|||+.|+.++ .+
T Consensus       198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~-------~~g~~~~~~wSPDG~~La~~~~~~  269 (429)
T PRK01742        198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VAS-------FRGHNGAPAFSPDGSRLAFASSKD  269 (429)
T ss_pred             EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-Eec-------CCCccCceeECCCCCEEEEEEecC
Confidence            456678889999999999999987643   369999997764321 111       112334689999999888764 67


Q ss_pred             CcEEEE--eCCCCceeecccCCCCcEEEEEecCCCCeEEEEc-CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCC
Q 016257          134 GHLRIM--HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (392)
Q Consensus       134 g~i~i~--d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (392)
                      |.+.||  |+.+++. ..+..+...+....|+|||+.|+.++ .++...+|++...........+ ..  ....|+|+++
T Consensus       270 g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~-~~--~~~~~SpDG~  345 (429)
T PRK01742        270 GVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG-RG--YSAQISADGK  345 (429)
T ss_pred             CcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC-CC--CCccCCCCCC
Confidence            765555  6655554 34445555678899999999877554 5788888877532221222222 22  4578999999


Q ss_pred             cceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecC--CceeeeeeeccccC
Q 016257          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK--KMEINHWSKRLHLG  288 (392)
Q Consensus       211 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~  288 (392)
                      .     ++..+.++ +.+||+.+++.......  .....+.|+|||++|+.++.++...+|++.  +++....+ ..| .
T Consensus       346 ~-----ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l-~~~-~  415 (429)
T PRK01742        346 T-----LVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL-PGS-D  415 (429)
T ss_pred             E-----EEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc-cCC-C
Confidence            7     44444444 66699988765432222  233567899999999999999988888753  46655555 356 6


Q ss_pred             cceEEEEEeeC
Q 016257          289 TSIALVEFCPT  299 (392)
Q Consensus       289 ~~i~~~~~s~~  299 (392)
                      +.+..++|+|-
T Consensus       416 g~~~~p~wsp~  426 (429)
T PRK01742        416 GQVKFPAWSPY  426 (429)
T ss_pred             CCCCCcccCCC
Confidence            77889999984

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.83  E-value=9.4e-19  Score=153.24  Aligned_cols=267  Identities=14%  Similarity=0.177  Sum_probs=199.2

Q ss_pred             CeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 016257           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL  144 (392)
Q Consensus        65 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~  144 (392)
                      .|+.++|-|||..|+.+..+. +.+||...+.....+.       .|...|++++|+.||+.+++|+.|..|.+|+-+-.
T Consensus        14 ci~d~afkPDGsqL~lAAg~r-lliyD~ndG~llqtLK-------gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE   85 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSR-LLVYDTSDGTLLQPLK-------GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE   85 (1081)
T ss_pred             chheeEECCCCceEEEecCCE-EEEEeCCCcccccccc-------cccceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence            799999999999988875554 9999999887655443       37889999999999999999999999999986533


Q ss_pred             ceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCcc
Q 016257          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (392)
Q Consensus       145 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~  224 (392)
                      ..+  ...|.+.|.|+.|+|-...|++++-. ..-+|........+ .  .....+.+++|..||++     ++.|-.+|
T Consensus        86 G~L--kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~--kss~R~~~CsWtnDGqy-----lalG~~nG  154 (1081)
T KOG1538|consen   86 GIL--KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-H--KSSSRIICCSWTNDGQY-----LALGMFNG  154 (1081)
T ss_pred             cee--eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-h--hhheeEEEeeecCCCcE-----EEEeccCc
Confidence            222  24577799999999999999998863 46788875433222 1  12346899999999997     78899999


Q ss_pred             EEEEEeCCCceee--eeecccCCCcEEEEECCCC-----CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEe
Q 016257          225 LLAVYDISTWNKI--GHKRLLRKPASVLSISLDG-----KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (392)
Q Consensus       225 ~i~v~d~~~~~~~--~~~~~~~~~v~~~~~s~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  297 (392)
                      +|.+-+....+..  ....+...+|.+++|+|..     ..+++.....++.+|.+.....-..  +.- +....|+.+-
T Consensus       155 TIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~--r~L-~FdP~CisYf  231 (1081)
T KOG1538|consen  155 TISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKD--RAL-NFDPCCISYF  231 (1081)
T ss_pred             eEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccc--ccC-CCCchhheec
Confidence            9999865533332  2223467899999999963     5788888888899998865433222  122 5567889999


Q ss_pred             eCCCeEEEEeCCCeEEEEEeecC-----cccc--ceeeeeeeeeeeeeceEEEEeeecceeeeecccc
Q 016257          298 PTQRVVLTASKEWGAMITKLTVP-----ADWK--EWQIYSLLLALFLASAVVFYIFFENSDSFWNFPV  358 (392)
Q Consensus       298 ~~~~~l~~~~~dg~i~iw~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~  358 (392)
                      ++|.+++.|+.|+.+.++.-+.-     .+..  .|.+...+++.     .+..++.||+|-.+++-.
T Consensus       232 ~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ-----~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  232 TNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQ-----YVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             cCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCc-----eEEEEEccCeeehhhhHH
Confidence            99999999999999999865421     1222  44555555544     566677899999888754

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.82  E-value=2.7e-18  Score=135.89  Aligned_cols=248  Identities=17%  Similarity=0.205  Sum_probs=178.8

Q ss_pred             CCCeeEEEEcC--C-CCeEEEEeC----CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCC-----EEEEE
Q 016257           63 EGDPMTIAVNP--S-GDDFVCSTT----NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-----RFAAG  130 (392)
Q Consensus        63 ~~~v~~~~~sp--~-~~~l~~~~~----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----~l~~~  130 (392)
                      .-.++++.|+.  + +.+||.|+.    .+.|.|..+.....  ++.  ....+.|.-+++.+.|.|+..     +||+.
T Consensus        44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~--e~~--~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs  119 (364)
T KOG0290|consen   44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG--ELV--EDANFDHPYPVTKLMWIPDSKGVYPDLLATS  119 (364)
T ss_pred             CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC--cee--ccCCCCCCCCccceEecCCccccCcchhhcc
Confidence            35688899983  2 347888873    45688877763322  111  223356889999999999763     56654


Q ss_pred             eCCCcEEEEeCCCC--ceee-------cccCCCCcEEEEEecC-CCCeEEEEcCCCcEEEEECCCCee--eEEEecCCCc
Q 016257          131 GVDGHLRIMHWPSL--RIIL-------DEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDE  198 (392)
Q Consensus       131 ~~dg~i~i~d~~~~--~~~~-------~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~  198 (392)
                        +..+|+|.+...  +...       +...+..++++..|+. +-++|.+++-|.+..|||++++..  +++-...|+.
T Consensus       120 --~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDK  197 (364)
T KOG0290|consen  120 --SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDK  197 (364)
T ss_pred             --cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCc
Confidence              357999998632  2111       0112334899999987 778899999999999999998633  3333333455


Q ss_pred             ceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec---ccCCCcEEEEECCC-CCEEEEEeCC-CcEEEEec
Q 016257          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR---LLRKPASVLSISLD-GKYLAMGSKD-GDICVVDV  273 (392)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~s~~-~~~l~~~~~d-g~i~iwd~  273 (392)
                      .|..++|...+...    +++.+.||.+++||+|..+.-..+.   ....+...++|+++ -+++|+-..| ..|.|.|+
T Consensus       198 EV~DIaf~~~s~~~----FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi  273 (364)
T KOG0290|consen  198 EVYDIAFLKGSRDV----FASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI  273 (364)
T ss_pred             ceeEEEeccCccce----EEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence            89999999977763    5889999999999999765432222   22457778899885 4778876655 56999999


Q ss_pred             CCceeeeeeeccccCcceEEEEEeeCC-CeEEEEeCCCeEEEEEeecCc
Q 016257          274 KKMEINHWSKRLHLGTSIALVEFCPTQ-RVVLTASKEWGAMITKLTVPA  321 (392)
Q Consensus       274 ~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~  321 (392)
                      +.........+.| .+.|+.++|.|.. ..|+++++|..+.+||+....
T Consensus       274 R~P~tpva~L~~H-~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~  321 (364)
T KOG0290|consen  274 RVPCTPVARLRNH-QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP  321 (364)
T ss_pred             cCCCcceehhhcC-cccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence            9876555445789 9999999999965 489999999999999998543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=2.6e-17  Score=148.68  Aligned_cols=325  Identities=12%  Similarity=0.105  Sum_probs=227.6

Q ss_pred             cCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC---eEEEEeCCCeE
Q 016257           11 SWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD---DFVCSTTNGGC   87 (392)
Q Consensus        11 ~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~---~l~~~~~d~~i   87 (392)
                      .|++|... .++.         ..+.|.||...        +..+...+.+|..++..+.+.|...   ++++++.+|.|
T Consensus        23 vfSnD~k~-l~~~---------~~~~V~VyS~~--------Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I   84 (792)
T KOG1963|consen   23 VFSNDAKF-LFLC---------TGNFVKVYSTA--------TGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTI   84 (792)
T ss_pred             ccccCCcE-EEEe---------eCCEEEEEecc--------hHhhhhhcccccCccceeeecCCCccceEEEEEecCccE
Confidence            46777654 2333         35668899877        5666678999999999999988544   67789999999


Q ss_pred             EEEEEeCCccce--------------------------------------------------------------------
Q 016257           88 KLFEVYGGATDI--------------------------------------------------------------------   99 (392)
Q Consensus        88 ~iw~~~~~~~~~--------------------------------------------------------------------   99 (392)
                      ++||...+....                                                                    
T Consensus        85 ~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~  164 (792)
T KOG1963|consen   85 RVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPK  164 (792)
T ss_pred             EEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCc
Confidence            999987664300                                                                    


Q ss_pred             ----------------------------eeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC--C--cee
Q 016257          100 ----------------------------NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS--L--RII  147 (392)
Q Consensus       100 ----------------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~--~--~~~  147 (392)
                                                  +..........|...+++.++||+++++++|..||.|.+|.--.  +  ...
T Consensus       165 ~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~  244 (792)
T KOG1963|consen  165 SIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETC  244 (792)
T ss_pred             cEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccc
Confidence                                        00000011123555678999999999999999999999996322  1  123


Q ss_pred             ecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEE
Q 016257          148 LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (392)
Q Consensus       148 ~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~  227 (392)
                      ..+.=|+..|.+++|+++|.+|++|+..+.+.+|.+.+++  +++...-..+|..+.++||+..     ......|+.|.
T Consensus       245 t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~-----~sl~~~DNqI~  317 (792)
T KOG1963|consen  245 TLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDL-----YSLVLEDNQIH  317 (792)
T ss_pred             eEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCe-----EEEEecCceEE
Confidence            3445577899999999999999999999999999999988  4555556679999999999996     45566699999


Q ss_pred             EEeCCCceeeeeecc-----------cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec----ccc-----
Q 016257          228 VYDISTWNKIGHKRL-----------LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR----LHL-----  287 (392)
Q Consensus       228 v~d~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~-----  287 (392)
                      +....+......+.+           ..+-.+.++++|.-+.++..+..|.|.+||+-+.+.+..+..    .+.     
T Consensus       318 li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~  397 (792)
T KOG1963|consen  318 LIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNI  397 (792)
T ss_pred             EEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCccee
Confidence            988765443322221           133456789999777888888999999999988665544321    110     


Q ss_pred             CcceEEEEEeeCCCeEEEEeC----------CCeEEEEEeecCccccceeee----------eeeeeeee--eceEEEEe
Q 016257          288 GTSIALVEFCPTQRVVLTASK----------EWGAMITKLTVPADWKEWQIY----------SLLLALFL--ASAVVFYI  345 (392)
Q Consensus       288 ~~~i~~~~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~----------~~~~~~~~--~~~~~~~~  345 (392)
                      .-.++.++.+-.|.+++|.-.          .-.+++|.......  .|.+.          +.......  .+..++++
T Consensus       398 ~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~k--t~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta  475 (792)
T KOG1963|consen  398 QVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSK--TFILNTKINNPHGNAFVATIFLNPTRSVRCVTA  475 (792)
T ss_pred             EEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcc--eeEEEEEEecCCCceeEEEEEecCcccceeEEe
Confidence            235778888888999988753          23678887764322  22111          11111111  12267788


Q ss_pred             eecceeeeecccccccc
Q 016257          346 FFENSDSFWNFPVARNQ  362 (392)
Q Consensus       346 ~~d~~i~~W~~~~~~~~  362 (392)
                      +.|+.+++|.+....++
T Consensus       476 ~~dg~~KiW~~~~~~n~  492 (792)
T KOG1963|consen  476 SVDGDFKIWVFTDDSNI  492 (792)
T ss_pred             ccCCeEEEEEEeccccc
Confidence            89999999999655544

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.82  E-value=8e-19  Score=149.89  Aligned_cols=258  Identities=16%  Similarity=0.138  Sum_probs=174.9

Q ss_pred             CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEE-EeCCcc-ceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEE
Q 016257           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFE-VYGGAT-DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (392)
Q Consensus        61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~-~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  138 (392)
                      .|...+.|+.|+.+...+.++ .|..+.+|. +.+... .........+...|.++ .+..=-.....|+.++.||.+.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~-rs~~~g~~~d~~~i~s~DGkf~i   89 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGG-RSSGGGKGSDTLLICSNDGRFVI   89 (737)
T ss_pred             ccceeEEeecccccceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccc-cccCCCCCcceEEEEcCCceEEE
Confidence            356677899998776665554 555555554 433221 11111111122122111 00000112346888889999999


Q ss_pred             EeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (392)
                      .+ +.++.-.....|.+.+.+-.|+|||.-|+++++||.|++|.- +|....++. ....+|+|++|.|+....    ++
T Consensus        90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~-Q~~~~v~c~~W~p~S~~v----l~  162 (737)
T KOG1524|consen   90 LN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVV-QNEESIRCARWAPNSNSI----VF  162 (737)
T ss_pred             ec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHh-hcCceeEEEEECCCCCce----EE
Confidence            87 455555566778889999999999999999999999999984 443333332 345589999999999862    22


Q ss_pred             EeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEee
Q 016257          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (392)
Q Consensus       219 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  298 (392)
                        +..+.+.+=.+.....+-..+.|++-|.++.|++...++++|++|-+.++||.....+...  ..| +.+|++++|.|
T Consensus       163 --c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S--~~~-ey~ITSva~np  237 (737)
T KOG1524|consen  163 --CQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTS--AAE-EYAITSVAFNP  237 (737)
T ss_pred             --ecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccC--Chh-ccceeeeeecc
Confidence              2345677767766666678899999999999999999999999999999999765544433  466 88999999999


Q ss_pred             CCCeEEEEeCCCeEEEEEeecCccccceeeeeeeeeeee
Q 016257          299 TQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFL  337 (392)
Q Consensus       299 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  337 (392)
                      + +.++.++.. +++   +..+..-.++.+.+++++...
T Consensus       238 d-~~~~v~S~n-t~R---~~~p~~GSifnlsWS~DGTQ~  271 (737)
T KOG1524|consen  238 E-KDYLLWSYN-TAR---FSSPRVGSIFNLSWSADGTQA  271 (737)
T ss_pred             c-cceeeeeee-eee---ecCCCccceEEEEEcCCCcee
Confidence            9 667777665 565   444444456666666665543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.82  E-value=7.1e-20  Score=163.82  Aligned_cols=253  Identities=13%  Similarity=0.090  Sum_probs=194.9

Q ss_pred             EEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCc
Q 016257           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (392)
Q Consensus        56 ~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  135 (392)
                      ...+.+|.++|+|+.|...|.++++|+.|..++||..++..+.....       .|.+.++.++.+.+...+++++.|..
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r-------Ghs~ditdlavs~~n~~iaaaS~D~v  255 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR-------GHSGDITDLAVSSNNTMIAAASNDKV  255 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC-------CCccccchhccchhhhhhhhcccCce
Confidence            34578999999999999999999999999999999988887655443       37889999999999999999999999


Q ss_pred             EEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEE---EecCCCcceE-----------
Q 016257          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF---LTRNSDEKIE-----------  201 (392)
Q Consensus       136 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~---~~~~~~~~v~-----------  201 (392)
                      |++|.+.++.++..+.+|.+.|++++|+|-.    +.+.||++++||.+-.-.+..   +.......+.           
T Consensus       256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f  331 (1113)
T KOG0644|consen  256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRF  331 (1113)
T ss_pred             EEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccc
Confidence            9999999999999999999999999999954    778899999999871100000   0000000111           


Q ss_pred             ---------------EEEecCCCCcceE-------EEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCC-CE
Q 016257          202 ---------------LCRFSKDGTKPFL-------FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG-KY  258 (392)
Q Consensus       202 ---------------~~~~~~~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~  258 (392)
                                     +++|...... |.       ...+++-.+-.+.+|++.++.....+.+|...+..+.++|-+ ..
T Consensus       332 ~Tgs~d~ea~n~e~~~l~~~~~~li-f~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri  410 (1113)
T KOG0644|consen  332 LTGSRDGEARNHEFEQLAWRSNLLI-FVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRI  410 (1113)
T ss_pred             ccccCCcccccchhhHhhhhccceE-EEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHh
Confidence                           1111111110 00       012334456678899999998888889999999999999965 45


Q ss_pred             EEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257          259 LAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       259 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                      ..+++.||...|||+-.+..++....+|  +.+..-+||+||+.++....-|.++|........
T Consensus       411 ~msag~dgst~iwdi~eg~pik~y~~gh--~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  411 AMSAGYDGSTIIWDIWEGIPIKHYFIGH--GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             hhhccCCCceEeeecccCCcceeeeccc--ceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence            5678899999999999988887776665  6788889999999999988889999987654443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.81  E-value=1.4e-16  Score=139.68  Aligned_cols=246  Identities=13%  Similarity=0.167  Sum_probs=156.5

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC-
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-   83 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~-   83 (392)
                      +....++++|+++.  |.+ +..     .++.|.+|.++.++ .+.    ..... ...+.+..++|+|++++|++++. 
T Consensus        35 ~~~~~l~~spd~~~--lyv-~~~-----~~~~i~~~~~~~~g-~l~----~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~  100 (330)
T PRK11028         35 GQVQPMVISPDKRH--LYV-GVR-----PEFRVLSYRIADDG-ALT----FAAES-PLPGSPTHISTDHQGRFLFSASYN  100 (330)
T ss_pred             CCCccEEECCCCCE--EEE-EEC-----CCCcEEEEEECCCC-ceE----Eeeee-cCCCCceEEEECCCCCEEEEEEcC
Confidence            34566788998754  222 221     24668888887322 111    11111 12345788999999998888764 


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CCCcEEEEeCCCCceeec------ccCCCCc
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILD------EPKAHKS  156 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~------~~~~~~~  156 (392)
                      ++.|.+|++.+.........    ...+......++++|+++++++++ .++.|.+||+++...+..      .......
T Consensus       101 ~~~v~v~~~~~~g~~~~~~~----~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~  176 (330)
T PRK11028        101 ANCVSVSPLDKDGIPVAPIQ----IIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAG  176 (330)
T ss_pred             CCeEEEEEECCCCCCCCcee----eccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCC
Confidence            78899999964332211111    112234567889999999886655 569999999976432211      0111235


Q ss_pred             EEEEEecCCCCeEEEEcC-CCcEEEEECCC--C--eeeEEEecC-----CCcceEEEEecCCCCcceEEEEEEe-CCccE
Q 016257          157 VLDMDFSLDSEFLATTST-DGSARIWKTED--G--VAWTFLTRN-----SDEKIELCRFSKDGTKPFLFCTVQR-GDKAL  225 (392)
Q Consensus       157 i~~i~~~~~~~~l~~~~~-d~~i~vwd~~~--~--~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~-~~d~~  225 (392)
                      ...+.|+|++++++++.. +++|.+|+++.  +  +.+..+...     .......+.++|++++     ++++ ..++.
T Consensus       177 p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~-----lyv~~~~~~~  251 (330)
T PRK11028        177 PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH-----LYACDRTASL  251 (330)
T ss_pred             CceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE-----EEEecCCCCe
Confidence            678999999999988876 89999999973  2  223333211     1112336889999997     3444 45789


Q ss_pred             EEEEeCCCce----eeeeecccCCCcEEEEECCCCCEEEEEeC-CCcEEEEecC
Q 016257          226 LAVYDISTWN----KIGHKRLLRKPASVLSISLDGKYLAMGSK-DGDICVVDVK  274 (392)
Q Consensus       226 i~v~d~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~  274 (392)
                      |.+|++....    .+..... ......+.++|+|++|+++.. +++|.+|+++
T Consensus       252 I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        252 ISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            9999986432    2222222 234567899999999998875 8899999874

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.81  E-value=5.1e-17  Score=130.38  Aligned_cols=241  Identities=14%  Similarity=0.169  Sum_probs=172.1

Q ss_pred             CeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEE-EEeCC------CcEE
Q 016257           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVD------GHLR  137 (392)
Q Consensus        65 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d------g~i~  137 (392)
                      ...+++|+.|...+++|..+| .+||+.+.-+.......     ....-.+.-+-|  -.++|+ +|+.+      .++.
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~-----~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkvi   78 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQF-----IDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVI   78 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhcc-----ccCchhhhhHhh--hhceEEEecCCCCCCCCCceEE
Confidence            445599999999999999888 99999876332111100     000111122222  223443 34333      5799


Q ss_pred             EEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECC-CCeeeEEEecCCCcceEEEEecCCCCcceEEE
Q 016257          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC  216 (392)
Q Consensus       138 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (392)
                      |||=...+++. ......+|.++.+.++  .|++.- .+.|+||... +.+.++.+....+ +-.-++..|.....++  
T Consensus        79 IWDD~k~~~i~-el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~N-PkGlC~~~~~~~k~~L--  151 (346)
T KOG2111|consen   79 IWDDLKERCII-ELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSN-PKGLCSLCPTSNKSLL--  151 (346)
T ss_pred             EEecccCcEEE-EEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccC-CCceEeecCCCCceEE--
Confidence            99954445543 3345578999999865  455554 4789999987 4556666543321 2234555665544222  


Q ss_pred             EEEeCCccEEEEEeCCCcee--eeeecccCCCcEEEEECCCCCEEEEEeCCCc-EEEEecCCceeeeeeeccccCcceEE
Q 016257          217 TVQRGDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDGD-ICVVDVKKMEINHWSKRLHLGTSIAL  293 (392)
Q Consensus       217 ~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~i~~  293 (392)
                      ..-|-.-|.|.|-|+...+.  ...+..|...|.|++.+-+|..+|+++..|+ |||||..+++.+..+.++.....|.+
T Consensus       152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~  231 (346)
T KOG2111|consen  152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYC  231 (346)
T ss_pred             EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEE
Confidence            34556679999999987655  4678899999999999999999999999998 79999999999999988876789999


Q ss_pred             EEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257          294 VEFCPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       294 ~~~s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      ++|||++.+|+++|+.|++.|+.+...
T Consensus       232 iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  232 IAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            999999999999999999999999854

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.81  E-value=8.4e-18  Score=143.74  Aligned_cols=207  Identities=11%  Similarity=0.080  Sum_probs=160.9

Q ss_pred             CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCC
Q 016257           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK  155 (392)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  155 (392)
                      +.++.++.||.+.|.+-.. +....       ...|.+.+.+-.|+|||.-|+++++||.|++|. ++|-....+.....
T Consensus        76 d~~~i~s~DGkf~il~k~~-rVE~s-------v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~  146 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSA-RVERS-------ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEE  146 (737)
T ss_pred             ceEEEEcCCceEEEecccc-hhhhh-------hhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCc
Confidence            4678888999988876432 22111       123788999999999999999999999999998 45544434444556


Q ss_pred             cEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce
Q 016257          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (392)
Q Consensus       156 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~  235 (392)
                      +|+|++|.|+.+.++.+.. +.+.+=.+.....+-.+..| ++-|.++.|++....     ++++++|-..++||-. +.
T Consensus       147 ~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAH-DGiiL~~~W~~~s~l-----I~sgGED~kfKvWD~~-G~  218 (737)
T KOG1524|consen  147 SIRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAH-DGLVLSLSWSTQSNI-----IASGGEDFRFKIWDAQ-GA  218 (737)
T ss_pred             eeEEEEECCCCCceEEecC-CeEEEeecccccceeEEecc-CcEEEEeecCccccc-----eeecCCceeEEeeccc-Cc
Confidence            8999999998887776654 66777777766666667665 558999999999986     8999999999999976 45


Q ss_pred             eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEE
Q 016257          236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI  314 (392)
Q Consensus       236 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  314 (392)
                      .+.....|+.+|++++|.|+ +.++.++.+ +++            +.... .+.|..++||+||..+++|+..|.+.+
T Consensus       219 ~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R------------~~~p~-~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  219 NLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR------------FSSPR-VGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ccccCChhccceeeeeeccc-cceeeeeee-eee------------ecCCC-ccceEEEEEcCCCceeeccccCceEEE
Confidence            66677788999999999999 666766643 344            22233 788999999999999999999887765

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.5e-17  Score=134.59  Aligned_cols=270  Identities=11%  Similarity=0.105  Sum_probs=185.1

Q ss_pred             CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEeCCCcEEEEeCCCCceeecc--c
Q 016257           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDE--P  151 (392)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~  151 (392)
                      ..+|++...|.|++||..+++....+..       +...++.+.|..  ..+.+.+++.||+|++||++......++  .
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~-------~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~  113 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG-------PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT  113 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecC-------CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence            5788999999999999999876666554       345667888876  4678999999999999999876654333  2


Q ss_pred             CCC-CcEEEEEecCCCCeEEEEc----CCCcEEEEECCCCee-eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccE
Q 016257          152 KAH-KSVLDMDFSLDSEFLATTS----TDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (392)
Q Consensus       152 ~~~-~~i~~i~~~~~~~~l~~~~----~d~~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~  225 (392)
                      .+. .+..+++..-.++.+++|+    .+-.+.+||+|..+. +..+...|...|+++.|+|....+    +++|+.||.
T Consensus       114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnl----LlSGSvDGL  189 (376)
T KOG1188|consen  114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNL----LLSGSVDGL  189 (376)
T ss_pred             CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCe----EEeecccce
Confidence            233 2566777766777787775    356799999998776 777776677789999999998764    799999999


Q ss_pred             EEEEeCCCcee---eeeecccCCCcEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeecccc-----------Ccc
Q 016257          226 LAVYDISTWNK---IGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHL-----------GTS  290 (392)
Q Consensus       226 i~v~d~~~~~~---~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~~~  290 (392)
                      +.+||++....   +.....+...|.++.|..++ +.|.+-+......+|+++.+.....+.....           ..-
T Consensus       190 vnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~  269 (376)
T KOG1188|consen  190 VNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYV  269 (376)
T ss_pred             EEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence            99999986432   33334566789999999877 5688888899999999998775444322110           011


Q ss_pred             eEEEEEeeCCCeEEEEeC-CCeEEEEEeecCccccceeee----------eeeeeeeeeceEEEEeeecceeeeeccc
Q 016257          291 IALVEFCPTQRVVLTASK-EWGAMITKLTVPADWKEWQIY----------SLLLALFLASAVVFYIFFENSDSFWNFP  357 (392)
Q Consensus       291 i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~d~~i~~W~~~  357 (392)
                      |... ...++..++.++. -|...++-+........-...          ..-..+......+++++-||.+.+|..+
T Consensus       270 I~~~-~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  270 INEH-SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             eecc-cCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence            1111 1123345555444 677777766532111110000          0111112456678888999999999953

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.81  E-value=2e-16  Score=138.43  Aligned_cols=261  Identities=14%  Similarity=0.136  Sum_probs=165.7

Q ss_pred             CceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-
Q 016257           53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-  131 (392)
Q Consensus        53 ~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-  131 (392)
                      ......+.........+.|+|||+++++++.||.|.++|+.+.+...+...        ......+++|+||++++++. 
T Consensus        26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~--------G~~~~~i~~s~DG~~~~v~n~   97 (369)
T PF02239_consen   26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV--------GGNPRGIAVSPDGKYVYVANY   97 (369)
T ss_dssp             -SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---------SSEEEEEEE--TTTEEEEEEE
T ss_pred             CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--------CCCcceEEEcCCCCEEEEEec
Confidence            344445654444445678999999999999999999999999986666543        23568999999999998775 


Q ss_pred             CCCcEEEEeCCCCceeecccCC-------CCcEEEEEecCCCCeEEEEc-CCCcEEEEECCCCeeeEEEecCCCcceEEE
Q 016257          132 VDGHLRIMHWPSLRIILDEPKA-------HKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIELC  203 (392)
Q Consensus       132 ~dg~i~i~d~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~  203 (392)
                      .++.+.++|.++.+.+..+...       ...+..+..+|....++..- +.+.|.+.|....+.+..-...........
T Consensus        98 ~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~  177 (369)
T PF02239_consen   98 EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDG  177 (369)
T ss_dssp             ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEE
T ss_pred             CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccccc
Confidence            5899999999999887665432       23577888888887555554 458888888876654433222233467889


Q ss_pred             EecCCCCcceEEEEEEeCCccEEEEEeCCCceee----------------------------------------------
Q 016257          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI----------------------------------------------  237 (392)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~----------------------------------------------  237 (392)
                      .|+|++++.    +++....+.|.++|.++++.+                                              
T Consensus       178 ~~dpdgry~----~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v  253 (369)
T PF02239_consen  178 GFDPDGRYF----LVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSV  253 (369)
T ss_dssp             EE-TTSSEE----EEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-
T ss_pred             ccCccccee----eecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCcccc
Confidence            999999863    233444557777777664332                                              


Q ss_pred             ---------eeecccCCCcEEEEECCCCCEEEEE----eCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEE
Q 016257          238 ---------GHKRLLRKPASVLSISLDGKYLAMG----SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL  304 (392)
Q Consensus       238 ---------~~~~~~~~~v~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  304 (392)
                               +.+.....+ ..+..+|+++++++.    ...+.|.++|.++.+....+.... ...+..+.|+++|+.+.
T Consensus       254 ~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~dG~~v~  331 (369)
T PF02239_consen  254 HDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP-GKRVVHMEFNPDGKEVW  331 (369)
T ss_dssp             STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH-T--EEEEEE-TTSSEEE
T ss_pred             chhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC-CCcEeccEECCCCCEEE
Confidence                     111111222 457779999999988    345889999999998877764433 44599999999999655


Q ss_pred             EEeC--CCeEEEEEeecCcccccee
Q 016257          305 TASK--EWGAMITKLTVPADWKEWQ  327 (392)
Q Consensus       305 ~~~~--dg~i~iw~~~~~~~~~~~~  327 (392)
                      .+..  ++.|.++|..+.+......
T Consensus       332 vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  332 VSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             EEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             EEEecCCCEEEEEECCCcEEEEEEE
Confidence            4443  3479999998776654444

...

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.80  E-value=1e-17  Score=134.42  Aligned_cols=227  Identities=11%  Similarity=0.045  Sum_probs=174.6

Q ss_pred             CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC
Q 016257           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (392)
Q Consensus        62 h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~  141 (392)
                      -.++|+|.+|++|+..+|.+..+..|.||.....+.-....    ...+|...|+.+.|+|..+.|++++.|..-++|..
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~h----tls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAH----TLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceece----ehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence            35789999999999999999999999999988766222111    11247889999999999999999999999999998


Q ss_pred             CCC---ceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeee---EEEecCCCcceEEEEecCCCCcceEE
Q 016257          142 PSL---RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW---TFLTRNSDEKIELCRFSKDGTKPFLF  215 (392)
Q Consensus       142 ~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (392)
                      ..+   ++...+..+....+++.|+|.++.|++|+..+.|.||-.+..+.-   +.+..+....|.++.|+|++-.    
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL----  160 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL----  160 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce----
Confidence            432   345566778889999999999999999999999999988654432   2233444567999999999986    


Q ss_pred             EEEEeCCccEEEEEeCCC------------------ceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce
Q 016257          216 CTVQRGDKALLAVYDIST------------------WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (392)
Q Consensus       216 ~~~~~~~d~~i~v~d~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  277 (392)
                       +++|+.|+..+++..--                  ++.+.+.....+.+..+.|+|+|..|+-.+.|+.+.+-|.....
T Consensus       161 -laaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  161 -LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             -ecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence             78999999999986421                  12233333456789999999999999999999999999987764


Q ss_pred             -eeeeeeccccCcceEEEEEeeC
Q 016257          278 -INHWSKRLHLGTSIALVEFCPT  299 (392)
Q Consensus       278 -~~~~~~~~~~~~~i~~~~~s~~  299 (392)
                       ........  .-+..++.|-.+
T Consensus       240 ~~v~~~~~~--~lP~ls~~~ise  260 (361)
T KOG1523|consen  240 ERVQSVATA--QLPLLSVSWISE  260 (361)
T ss_pred             hhccchhhc--cCCceeeEeecC
Confidence             22222222  356677777654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1.4e-17  Score=137.25  Aligned_cols=291  Identities=9%  Similarity=0.042  Sum_probs=202.9

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEe-eCCCCCeeEEEEcCCCCeEEEEe
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-DESEGDPMTIAVNPSGDDFVCST   82 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~~~~   82 (392)
                      -|-|.++.|+.++   .+++.|+.      +-.+.+|.++..-...  .+...... ..|...|.|++|....++|++|.
T Consensus        56 ~GCiNAlqFS~N~---~~L~SGGD------D~~~~~W~~de~~~~k--~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~  124 (609)
T KOG4227|consen   56 TGCINALQFSHND---RFLASGGD------DMHGRVWNVDELMVRK--TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE  124 (609)
T ss_pred             ccccceeeeccCC---eEEeecCC------cceeeeechHHHHhhc--CCCCceeccCccccceEEEEEccCCeeEecCC
Confidence            4678999999986   57887776      4557899887432221  22222222 34568999999999889999999


Q ss_pred             CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee---ecccCCCCcEEE
Q 016257           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII---LDEPKAHKSVLD  159 (392)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~i~~  159 (392)
                      .+++|...|+++.+.+..+...     ...+.|+.+..+|-.+.|++.+.++.|.+||.+.....   ............
T Consensus       125 ~~~~VI~HDiEt~qsi~V~~~~-----~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t  199 (609)
T KOG4227|consen  125 RWGTVIKHDIETKQSIYVANEN-----NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYT  199 (609)
T ss_pred             CcceeEeeecccceeeeeeccc-----CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcccee
Confidence            9999999999988754433221     13468999999998889999999999999999865522   122233447888


Q ss_pred             EEecCC-CCeEEEEcCCCcEEEEECCCCee-eEEE---ec-CC-CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC
Q 016257          160 MDFSLD-SEFLATTSTDGSARIWKTEDGVA-WTFL---TR-NS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (392)
Q Consensus       160 i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~-~~~~---~~-~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~  232 (392)
                      +.|+|. ..+|++.+..+-+-+||.+.... +...   .. +. ...-.++.|+|+|.+     +++--....-.+||+-
T Consensus       200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q-----~msiRR~~~P~~~D~~  274 (609)
T KOG4227|consen  200 AEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ-----FMSIRRGKCPLYFDFI  274 (609)
T ss_pred             eeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe-----ehhhhccCCCEEeeee
Confidence            999994 46788888889999999986432 1111   00 00 112356789999997     4444444455677877


Q ss_pred             CceeeeeecccC-------CCcEEEEECCCCCEEEEEeCCCcEEEEecCCc----------e------------eeeeee
Q 016257          233 TWNKIGHKRLLR-------KPASVLSISLDGKYLAMGSKDGDICVVDVKKM----------E------------INHWSK  283 (392)
Q Consensus       233 ~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----------~------------~~~~~~  283 (392)
                      +..+......|.       ..+.+++|-.| ..+++|+.+-.|++|.+...          .            ......
T Consensus       275 S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VL  353 (609)
T KOG4227|consen  275 SQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVL  353 (609)
T ss_pred             cccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEE
Confidence            655432222222       24556777655 44999999999999987531          0            011224


Q ss_pred             ccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEe
Q 016257          284 RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (392)
Q Consensus       284 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  317 (392)
                      ++| .+-+..+.|+|...+|++.+..+.++||.-
T Consensus       354 rGH-RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  354 RGH-RSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             ecc-cccccceeecCCcceEeccchhhheecccc
Confidence            688 889999999999999999999999999954

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.80  E-value=3.5e-19  Score=149.45  Aligned_cols=234  Identities=12%  Similarity=0.107  Sum_probs=193.2

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  142 (392)
                      .-..+.+.++.+|+.|+.|+..|.+-.+|..+.+....+..        ...|.++.|-.+.+++|++ ....++|||- 
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v--------~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-  198 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV--------METVRDVTFLHNEQFFAVA-QKKYVYVYDN-  198 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh--------hhhhhhhhhhcchHHHHhh-hhceEEEecC-
Confidence            34678899999999999999999999999999886555433        3478999999988888886 4678999994 


Q ss_pred             CCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCC
Q 016257          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD  222 (392)
Q Consensus       143 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  222 (392)
                      .|..+..+. .+..|..+.|-|..-+|++++..|.++.-|+..|+.+..+....+ .+..++-+|-+..     +-.|..
T Consensus       199 ~GtElHClk-~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G-~~~vm~qNP~NaV-----ih~Ghs  271 (545)
T KOG1272|consen  199 NGTELHCLK-RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG-RTDVMKQNPYNAV-----IHLGHS  271 (545)
T ss_pred             CCcEEeehh-hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCC-ccchhhcCCccce-----EEEcCC
Confidence            455554443 345789999999988999999999999999999999988876544 6888888887764     788999


Q ss_pred             ccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCe
Q 016257          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV  302 (392)
Q Consensus       223 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  302 (392)
                      .|+|.+|...+.+++..+..|.++|.++++.++|+|++|.+.|..++|||++....+..+..   ..+...+++|..| +
T Consensus       272 nGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkg-l  347 (545)
T KOG1272|consen  272 NGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT---PHPASNLSLSQKG-L  347 (545)
T ss_pred             CceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec---CCCcccccccccc-c
Confidence            99999999999999999999999999999999999999999999999999999886666544   3477888898654 3


Q ss_pred             EEEEeCCCeEEEEEee
Q 016257          303 VLTASKEWGAMITKLT  318 (392)
Q Consensus       303 l~~~~~dg~i~iw~~~  318 (392)
                      ||. +....+.||.=.
T Consensus       348 LA~-~~G~~v~iw~d~  362 (545)
T KOG1272|consen  348 LAL-SYGDHVQIWKDA  362 (545)
T ss_pred             eee-ecCCeeeeehhh
Confidence            444 444589999543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.79  E-value=2.8e-17  Score=147.78  Aligned_cols=258  Identities=13%  Similarity=0.102  Sum_probs=182.9

Q ss_pred             CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC--eEEE
Q 016257            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD--DFVC   80 (392)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~--~l~~   80 (392)
                      ...+|+|+.|+|..+.  +++.|..      +|.|.+|.+........ . ........|..+++.+.|..+..  -+++
T Consensus       241 ~~s~v~~~~f~p~~p~--ll~gG~y------~GqV~lWD~~~~~~~~~-s-~ls~~~~sh~~~v~~vvW~~~~~~~~f~s  310 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPN--LLAGGCY------NGQVVLWDLRKGSDTPP-S-GLSALEVSHSEPVTAVVWLQNEHNTEFFS  310 (555)
T ss_pred             cCCceeEEEeccCCcc--eEEeecc------CceEEEEEccCCCCCCC-c-ccccccccCCcCeEEEEEeccCCCCceEE
Confidence            4578999999997765  5554444      56688998875443221 1 12223456899999999976444  4999


Q ss_pred             EeCCCeEEEEEEeCCccceeecccc-----CCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCce--------
Q 016257           81 STTNGGCKLFEVYGGATDINLLAKK-----MPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRI--------  146 (392)
Q Consensus        81 ~~~d~~i~iw~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~--------  146 (392)
                      ++.||.|..|+++.-..........     .........+++++|.+ +...+++|+.+|.|.--+-...+.        
T Consensus       311 ~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~  390 (555)
T KOG1587|consen  311 LSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKG  390 (555)
T ss_pred             EecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccc
Confidence            9999999999876544322111111     11112345789999988 667899999999887733322111        


Q ss_pred             eecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECC-CCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccE
Q 016257          147 ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (392)
Q Consensus       147 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~  225 (392)
                      ......|.++|+.+.++|-+..++..+.|.++++|... ...++..+..... .+++++|||....+    +++...+|.
T Consensus       391 ~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpav----F~~~d~~G~  465 (555)
T KOG1587|consen  391 HSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAV----FATVDGDGN  465 (555)
T ss_pred             cccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceE----EEEEcCCCc
Confidence            22445566799999999976655544449999999987 6666666655543 69999999998763    577888999


Q ss_pred             EEEEeCCCc--eeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 016257          226 LAVYDISTW--NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (392)
Q Consensus       226 i~v~d~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  275 (392)
                      |.+||+...  .++..........+.+.|+++|+.|++|...|++++|++..
T Consensus       466 l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  466 LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             eehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            999999753  34444444456777889999999999999999999999964

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=4.8e-17  Score=149.49  Aligned_cols=293  Identities=13%  Similarity=0.162  Sum_probs=194.6

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeC---CCCCeeEEEEcC--CCCeEEE
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE---SEGDPMTIAVNP--SGDDFVC   80 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~sp--~~~~l~~   80 (392)
                      +-..+.|+|=..  .+++ .+      ....|.+|+++.... +       ..|..   -...|+.+.+-.  |..++++
T Consensus      1066 ~pk~~~~hpf~p--~i~~-ad------~r~~i~vwd~e~~~~-l-------~~F~n~~~~~t~Vs~l~liNe~D~aLlLt 1128 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP--QIAA-AD------DRERIRVWDWEKGRL-L-------NGFDNGAFPDTRVSDLELINEQDDALLLT 1128 (1387)
T ss_pred             CCceeeecCCCc--eeEE-cC------CcceEEEEecccCce-e-------ccccCCCCCCCccceeeeecccchhheee
Confidence            445566777432  3444 22      245689999974321 1       11211   134688888854  4458999


Q ss_pred             EeCCCeEEEEEEeCCc-cceeeccccCC----CCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCC
Q 016257           81 STTNGGCKLFEVYGGA-TDINLLAKKMP----PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK  155 (392)
Q Consensus        81 ~~~d~~i~iw~~~~~~-~~~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  155 (392)
                      ++.||.|+||+-.... ...++...-..    .....+.-.-+.|.....+|++++.-..|+|||....+.+..+....+
T Consensus      1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~ 1208 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS 1208 (1387)
T ss_pred             eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC
Confidence            9999999999864332 11121111000    000112225567887666777767688999999988777766655544


Q ss_pred             -cEEEEEecC-CCCeEEEEcCCCcEEEEECCCCee---eEEEecCCC-cceEEEEecCCCCcceEEEEEEeCCccEEEEE
Q 016257          156 -SVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (392)
Q Consensus       156 -~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~---~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~  229 (392)
                       .++++.-+. .|+.+++|..||.|++||.+....   +.....|.. .+|..+.+.+.|-..    +++++.+|.|++|
T Consensus      1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~e----lvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGE----LVSGSQDGDIQLL 1284 (1387)
T ss_pred             ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcc----eeeeccCCeEEEE
Confidence             677776544 468999999999999999886433   333333322 238888888866542    7999999999999


Q ss_pred             eCCCceeeeee--ccc---CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee----ccccCcceEEEEEeeCC
Q 016257          230 DISTWNKIGHK--RLL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK----RLHLGTSIALVEFCPTQ  300 (392)
Q Consensus       230 d~~~~~~~~~~--~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~i~~~~~s~~~  300 (392)
                      |++.......+  ..|   ++..+++..+++...+|+|+. +.|+||++...+.-....    .+...+.+.+++|+|-.
T Consensus      1285 DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1285 DLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred             ecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchh
Confidence            99974222111  111   235999999999999999998 899999987644322111    12225678999999999


Q ss_pred             CeEEEEeCCCeEEEEEeecC
Q 016257          301 RVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       301 ~~l~~~~~dg~i~iw~~~~~  320 (392)
                      -++|+|+.|..|.||....+
T Consensus      1364 ~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1364 LLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             HhhhhccCCceEEEeecCCc
Confidence            99999999999999987643

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.79  E-value=5.7e-17  Score=138.72  Aligned_cols=231  Identities=17%  Similarity=0.249  Sum_probs=157.8

Q ss_pred             eeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEE-----cCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCC
Q 016257           37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV-----NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (392)
Q Consensus        37 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-----sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  111 (392)
                      +.+|.+....  -...++....+++  ...+|=+|     .|.+--|+.|-..|.+++.|....+. .++....  ....
T Consensus       146 lyv~~~~g~~--~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~-sklfne~--r~i~  218 (636)
T KOG2394|consen  146 LYVYSYRGAA--DLSKPIDKREYKG--TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEV-SKLFNEE--RLIN  218 (636)
T ss_pred             EEEEEccCcc--hhccchhhhcccC--CCCceecccccccCCCCcceEEeeccCceEEecchhhHH-HHhhhhc--cccc
Confidence            5566665311  1123444444443  23444445     34566788888888899988766332 2211111  1123


Q ss_pred             CCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEE--EecCCCCeEEEEcCCCcEEEEECCCCee
Q 016257          112 AGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM--DFSLDSEFLATTSTDGSARIWKTEDGVA  188 (392)
Q Consensus       112 ~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i--~~~~~~~~l~~~~~d~~i~vwd~~~~~~  188 (392)
                      ...|+++.|-| +...++++..+|.+++||.+-       .   ...+..  ...+++..+.....-+.      .+..+
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~---~~~t~p~~~~~k~~~~f~i~t~ksk------~~rNP  282 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------V---CGATAPSYQALKDGDQFAILTSKSK------KTRNP  282 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccc-------c---ccCCCCcccccCCCCeeEEeeeecc------ccCCc
Confidence            47899999999 445677778899999998621       0   111111  12334554443322111      12244


Q ss_pred             eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcE
Q 016257          189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDI  268 (392)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  268 (392)
                      +..+..... .|...+|+|||++     +++.+.||.++|||..+.+.+..++..-+...|++|||||+||++|++|..|
T Consensus       283 v~~w~~~~g-~in~f~FS~DG~~-----LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLV  356 (636)
T KOG2394|consen  283 VARWHIGEG-SINEFAFSPDGKY-----LATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLV  356 (636)
T ss_pred             cceeEeccc-cccceeEcCCCce-----EEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceE
Confidence            555544433 7999999999998     8999999999999999988887777777899999999999999999999999


Q ss_pred             EEEecCCceeeeeeeccccCcceEEEEEee
Q 016257          269 CVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (392)
Q Consensus       269 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  298 (392)
                      .||.+...+++..- ++| .+.|+.++|.|
T Consensus       357 tVwSf~erRVVARG-qGH-kSWVs~VaFDp  384 (636)
T KOG2394|consen  357 TVWSFEERRVVARG-QGH-KSWVSVVAFDP  384 (636)
T ss_pred             EEEEeccceEEEec-ccc-ccceeeEeecc
Confidence            99999999988765 689 99999999987

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=7.2e-18  Score=140.15  Aligned_cols=195  Identities=20%  Similarity=0.204  Sum_probs=150.5

Q ss_pred             eEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCce
Q 016257           67 MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI  146 (392)
Q Consensus        67 ~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~  146 (392)
                      .+++|+.+|..|++|+.||.++||+..+.......       ..|.+.|.++.|+|||++|++-+.| ..+||+.+++..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e-------~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~  219 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE-------IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA  219 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh-------HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch
Confidence            46889999999999999999999998776543322       2478899999999999999999999 899999999966


Q ss_pred             eecccCCC--CcEEEEEecCCC---Ce--EEEEcCCCcEEEEECCCCee-----eEEEecCCCcceEEEEecCCCCcceE
Q 016257          147 ILDEPKAH--KSVLDMDFSLDS---EF--LATTSTDGSARIWKTEDGVA-----WTFLTRNSDEKIELCRFSKDGTKPFL  214 (392)
Q Consensus       147 ~~~~~~~~--~~i~~i~~~~~~---~~--l~~~~~d~~i~vwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (392)
                      +.......  .....+.|+.|+   .+  ++....-+.|+.||+...+.     .++.... ...|.+++.+++|+.   
T Consensus       220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~dGkf---  295 (398)
T KOG0771|consen  220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSDDGKF---  295 (398)
T ss_pred             hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc-cCcceeEEEcCCCcE---
Confidence            65444222  257788898877   33  33333446677777643221     1111112 236999999999997   


Q ss_pred             EEEEEeCCccEEEEEeCCCceeeeee-cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 016257          215 FCTVQRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (392)
Q Consensus       215 ~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  275 (392)
                        ++.++.+|.|.+++..+.+.++.. +.|..-|+.+.|+||.+++++.+.|....+..+.-
T Consensus       296 --~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  296 --LALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             --EEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence              899999999999999988776544 56888999999999999999999998888887654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.78  E-value=1.9e-16  Score=147.71  Aligned_cols=268  Identities=12%  Similarity=0.098  Sum_probs=179.9

Q ss_pred             CCCCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEE
Q 016257            1 MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC   80 (392)
Q Consensus         1 ~~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~   80 (392)
                      ||....|..++-+++..  .++++|+.      |++|++|+...-.... .......++.--...+.++...+.++.+|+
T Consensus      1045 ~Ehs~~v~k~a~s~~~~--s~FvsgS~------DGtVKvW~~~k~~~~~-~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHT--SLFVSGSD------DGTVKVWNLRKLEGEG-GSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred             hhccccccceeecCCCC--ceEEEecC------CceEEEeeehhhhcCc-ceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence            34455566666665443  36666665      7789999987533321 122333344434678999999999999999


Q ss_pred             EeCCCeEEEEEEeCCccceee-ccccCCCCCCCCCeE-EEEecC-CCC-EEEEEeCCCcEEEEeCCCCceeec--ccCCC
Q 016257           81 STTNGGCKLFEVYGGATDINL-LAKKMPPLQDAGPQK-CLSFSV-DGS-RFAAGGVDGHLRIMHWPSLRIILD--EPKAH  154 (392)
Q Consensus        81 ~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~v~-~~~~s~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~  154 (392)
                      ++.||.|++.++...+..... .....+.....+.+. .-+|.. ++. .++.+..-+.|..||++.......  ....+
T Consensus      1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred             EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence            999999999998763221111 111112222233333 334443 333 678888889999999987654433  33456


Q ss_pred             CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeC-CccEEEEEeCCC
Q 016257          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-DKALLAVYDIST  233 (392)
Q Consensus       155 ~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~d~~i~v~d~~~  233 (392)
                      +.|++++.+|.+.+++.|+..|.+.+||++=+.++..+..+...+++.+..+|-....-.. +.++. ..+.|.+|++.+
T Consensus      1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~-vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVS-VSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred             cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceE-EEecccCCCceeeeeccc
Confidence            7899999999999999999999999999999999999988777888888888765522111 34444 688999999998


Q ss_pred             ceeeeeeccc-C----------------C--CcEEEEECCCCCEEEEEeCCCcEEEEecCCcee
Q 016257          234 WNKIGHKRLL-R----------------K--PASVLSISLDGKYLAMGSKDGDICVVDVKKMEI  278 (392)
Q Consensus       234 ~~~~~~~~~~-~----------------~--~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  278 (392)
                      +.....+... +                .  ......+...+..+.+|+.|..|+.||....+.
T Consensus      1275 g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1275 GLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             CcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence            8654444322 0                0  111223333456889999999999999876543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.78  E-value=1.4e-17  Score=130.07  Aligned_cols=244  Identities=16%  Similarity=0.172  Sum_probs=172.1

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEee-CCCCCeeEEEEcCCCCeEEEEeC
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      +.|+|+.|-.++   . +..|.      ..+.+.+|.+...        .....++ .|...|+.+.--|+ ..|.+-++
T Consensus        15 ~~v~s~~fqa~~---r-L~sg~------~~G~V~~w~lqt~--------r~~~~~r~~g~~~it~lq~~p~-d~l~tqgR   75 (323)
T KOG0322|consen   15 SSVTSVLFQANE---R-LMSGL------SVGIVKMWVLQTE--------RDLPLIRLFGRLFITNLQSIPN-DSLDTQGR   75 (323)
T ss_pred             chheehhhccch---h-hhccc------ccceEEEEEeecC--------ccchhhhhhccceeeceeecCC-cchhhcCC
Confidence            445666665543   2 33333      3566899999733        2223345 46778999998887 56778889


Q ss_pred             CCeEEEEEEeCCccc--------------eeecccc--------------------------------CCCCCCCCCeEE
Q 016257           84 NGGCKLFEVYGGATD--------------INLLAKK--------------------------------MPPLQDAGPQKC  117 (392)
Q Consensus        84 d~~i~iw~~~~~~~~--------------~~~~~~~--------------------------------~~~~~~~~~v~~  117 (392)
                      |+.+.+|++......              ..+..+.                                .+.....+.+.+
T Consensus        76 d~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc  155 (323)
T KOG0322|consen   76 DPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC  155 (323)
T ss_pred             CceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence            999999998762210              0000000                                000111244555


Q ss_pred             EEecC-CCC--EEEEEeCCCcEEEEeCCCCceee----------cccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECC
Q 016257          118 LSFSV-DGS--RFAAGGVDGHLRIMHWPSLRIIL----------DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE  184 (392)
Q Consensus       118 ~~~s~-~~~--~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~  184 (392)
                      ..+.. ++.  ++++|.++|.+.+||+.++..+.          ....|.++|.++.+.+.-..=++++.+..+..|.++
T Consensus       156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~  235 (323)
T KOG0322|consen  156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLN  235 (323)
T ss_pred             eeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeec
Confidence            55433 333  46778889999999999874433          334566789999998866666788888899999886


Q ss_pred             CCe--e-e-EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEE
Q 016257          185 DGV--A-W-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (392)
Q Consensus       185 ~~~--~-~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  260 (392)
                      ...  . + ......+. .+..+..-||++.     +++++-|+.|+||..++.+++..++.|...|.+++|+|+...+|
T Consensus       236 ~s~gslq~~~e~~lknp-Gv~gvrIRpD~KI-----lATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmA  309 (323)
T KOG0322|consen  236 HSTGSLQIRKEITLKNP-GVSGVRIRPDGKI-----LATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMA  309 (323)
T ss_pred             cccCcccccceEEecCC-CccceEEccCCcE-----EeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhh
Confidence            431  1 1 11222222 5888999999996     89999999999999999999999999999999999999999999


Q ss_pred             EEeCCCcEEEEec
Q 016257          261 MGSKDGDICVVDV  273 (392)
Q Consensus       261 ~~~~dg~i~iwd~  273 (392)
                      .++.|++|.+|++
T Consensus       310 aaskD~rISLWkL  322 (323)
T KOG0322|consen  310 AASKDARISLWKL  322 (323)
T ss_pred             hccCCceEEeeec
Confidence            9999999999986

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=3e-17  Score=148.37  Aligned_cols=212  Identities=19%  Similarity=0.134  Sum_probs=143.6

Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC---CcEEEEeCCCCceeecccCCCCcEEEE
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDM  160 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i  160 (392)
                      +..|.+||...... ..+.       .+...+...+|||||+.|+..+.+   ..|++||+++++... +....+....+
T Consensus       183 ~~~i~i~d~dg~~~-~~lt-------~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~  253 (429)
T PRK01742        183 PYEVRVADYDGFNQ-FIVN-------RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAP  253 (429)
T ss_pred             eEEEEEECCCCCCc-eEec-------cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCce
Confidence            46799999865542 1111       245678999999999999887654   369999998876422 11122234468


Q ss_pred             EecCCCCeEEEEc-CCCcEEEE--ECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce-e
Q 016257          161 DFSLDSEFLATTS-TDGSARIW--KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-K  236 (392)
Q Consensus       161 ~~~~~~~~l~~~~-~d~~i~vw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~  236 (392)
                      +|+|||+.|+.++ .+|.+.||  |+.+++. ..+..+ ...+....|+|||+.+    ++++..++...+|+++... .
T Consensus       254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~-~~~~~~~~wSpDG~~i----~f~s~~~g~~~I~~~~~~~~~  327 (429)
T PRK01742        254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSG-AGNNTEPSWSPDGQSI----LFTSDRSGSPQVYRMSASGGG  327 (429)
T ss_pred             eECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccC-CCCcCCEEECCCCCEE----EEEECCCCCceEEEEECCCCC
Confidence            9999999888764 67765555  6655543 444433 3357889999999973    3445566777777764321 1


Q ss_pred             eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEE
Q 016257          237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (392)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  316 (392)
                      ...+ .+..  ....|+|||++|++.+.++ +.+||+.+++...... ..   ....+.|+|||++|+.++.++.+.+|.
T Consensus       328 ~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~  399 (429)
T PRK01742        328 ASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-TF---LDESPSISPNGIMIIYSSTQGLGKVLQ  399 (429)
T ss_pred             eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-CC---CCCCceECCCCCEEEEEEcCCCceEEE
Confidence            2222 2222  4578999999999887765 6679999887654321 11   335678999999999999999998887


Q ss_pred             ee
Q 016257          317 LT  318 (392)
Q Consensus       317 ~~  318 (392)
                      +.
T Consensus       400 ~~  401 (429)
T PRK01742        400 LV  401 (429)
T ss_pred             EE
Confidence            75

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=2.1e-16  Score=145.43  Aligned_cols=248  Identities=17%  Similarity=0.142  Sum_probs=181.2

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEeCCCcEEEEe
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMH  140 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d  140 (392)
                      ..+...+.|+|-...++++.....|+|||.+.++....+....    .....|+.+.+-.  |..++++|+.||.|+||+
T Consensus      1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~----~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA----FPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred             CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC----CCCCccceeeeecccchhheeeeccCceEEEec
Confidence            3457789999999999998877789999999887655544332    1346788998866  556899999999999996


Q ss_pred             CC-CC----ceeeccc-------CCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCC
Q 016257          141 WP-SL----RIILDEP-------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD  208 (392)
Q Consensus       141 ~~-~~----~~~~~~~-------~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (392)
                      -- +.    +.+....       ...+.=.-++|.....+|++++.-..|+|||.........+.......++++.-+-.
T Consensus      1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred             ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccccc
Confidence            42 21    1221111       111111346787766677777777899999999888888887766666777765544


Q ss_pred             C-CcceEEEEEEeCCccEEEEEeCCCcee---eeeecccCCC--cEEEEECCCCC-EEEEEeCCCcEEEEecCCceeeee
Q 016257          209 G-TKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLRKP--ASVLSISLDGK-YLAMGSKDGDICVVDVKKMEINHW  281 (392)
Q Consensus       209 ~-~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~--v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~  281 (392)
                      . ..     +++|-.||.|++||.+....   +...+.|...  |..+.+.+.|- .|++|+.||.|++||++.......
T Consensus      1220 ~gn~-----i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~ 1294 (1387)
T KOG1517|consen 1220 HGNI-----IAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETF 1294 (1387)
T ss_pred             CCce-----EEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccc
Confidence            3 43     78899999999999986543   4555666665  88999988774 599999999999999998432222


Q ss_pred             ee-cccc--CcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257          282 SK-RLHL--GTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       282 ~~-~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      +. ..|.  ++..+++..++....+|+|+. +.|+||++...
T Consensus      1295 ~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1295 LTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred             ceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh
Confidence            11 2221  235999999999999999998 89999999743

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.77  E-value=7.9e-15  Score=120.23  Aligned_cols=279  Identities=15%  Similarity=0.157  Sum_probs=193.6

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC-
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-   84 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d-   84 (392)
                      .+..+.|+.+.   .++..|+..|       .++|..++-..-.        ........|.-+-|+.+  ++|..+.+ 
T Consensus         7 ti~~~~~Nqd~---~~lsvGs~~G-------yk~~~~~~~~k~~--------~~~~~~~~IvEmLFSSS--LvaiV~~~q   66 (391)
T KOG2110|consen    7 TINFIGFNQDS---TLLSVGSKDG-------YKIFSCSPFEKCF--------SKDTEGVSIVEMLFSSS--LVAIVSIKQ   66 (391)
T ss_pred             ceeeeeeccce---eEEEccCCCc-------eeEEecCchHHhh--------cccCCCeEEEEeecccc--eeEEEecCC
Confidence            46667788776   6788666644       6688877543211        01111335666777654  56655544 


Q ss_pred             -CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCC---CCcEEEE
Q 016257           85 -GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA---HKSVLDM  160 (392)
Q Consensus        85 -~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~i~~i  160 (392)
                       ..+++.+.+....+-...        -..+|.++.++.+  .|++.-.+ .|+|||+++.+.+.++..-   ...+.++
T Consensus        67 pr~Lkv~~~Kk~~~ICe~~--------fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~Al  135 (391)
T KOG2110|consen   67 PRKLKVVHFKKKTTICEIF--------FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCAL  135 (391)
T ss_pred             CceEEEEEcccCceEEEEe--------cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEee
Confidence             348888887765443332        2357899999754  56665544 4999999999887666543   2356677


Q ss_pred             EecCCCCeEEEEc--CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccE-EEEEeCCCceee
Q 016257          161 DFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL-LAVYDISTWNKI  237 (392)
Q Consensus       161 ~~~~~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~-i~v~d~~~~~~~  237 (392)
                      .+++.+.+++.-+  ..|.|.+||+.+-++...+..| ++.+.+++|+++|..     ++++++.|+ |+|+.+.+++.+
T Consensus       136 S~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH-~~~lAalafs~~G~l-----lATASeKGTVIRVf~v~~G~kl  209 (391)
T KOG2110|consen  136 SPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAH-KGPLAALAFSPDGTL-----LATASEKGTVIRVFSVPEGQKL  209 (391)
T ss_pred             ccCCCCceEEecCCCCCceEEEEEcccceeeeEEEec-CCceeEEEECCCCCE-----EEEeccCceEEEEEEcCCccEe
Confidence            7777777888533  4589999999999999988865 558999999999997     899998876 789999999998


Q ss_pred             eeecccC--CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee---------------------------------
Q 016257          238 GHKRLLR--KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS---------------------------------  282 (392)
Q Consensus       238 ~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------------------------------  282 (392)
                      .+++...  ..|.+++|+|++.+|++.+..++|++|.++.-.....-                                 
T Consensus       210 ~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~  289 (391)
T KOG2110|consen  210 YEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRK  289 (391)
T ss_pred             eeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccc
Confidence            8876533  46789999999999999999999999988642210000                                 


Q ss_pred             ---eccccCcce-EEEEEe--eCCCeEEEEeCCCeEEEEEeecCcc
Q 016257          283 ---KRLHLGTSI-ALVEFC--PTQRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       283 ---~~~~~~~~i-~~~~~s--~~~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                         .+.. .+.. ..+.+.  +....+..++.||.++.|.++....
T Consensus       290 FAt~~l~-~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~g  334 (391)
T KOG2110|consen  290 FATAKLP-ESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEG  334 (391)
T ss_pred             eeEEEcc-CCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCC
Confidence               0000 1111 223344  3667899999999999999986533

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1e-17  Score=143.65  Aligned_cols=218  Identities=10%  Similarity=0.062  Sum_probs=160.0

Q ss_pred             ceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEe
Q 016257           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGG  131 (392)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~  131 (392)
                      .....|.||++.|+|++|+.+|.+|++|+.|-.+.|||....+....+..      .|...|.++.|-|  +.+.+++|.
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T------gHtaNIFsvKFvP~tnnriv~sgA  114 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST------GHTANIFSVKFVPYTNNRIVLSGA  114 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec------ccccceeEEeeeccCCCeEEEecc
Confidence            34567899999999999999999999999999999999986665444433      4788999999999  556889999


Q ss_pred             CCCcEEEEeCCCC----------ceeecccCCCCcEEEEEecCCC-CeEEEEcCCCcEEEEECCCCeeeE-------EEe
Q 016257          132 VDGHLRIMHWPSL----------RIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWT-------FLT  193 (392)
Q Consensus       132 ~dg~i~i~d~~~~----------~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~-------~~~  193 (392)
                      .|..|+++|+...          +.......|...|..++-.|++ ..+.++++||+|+-+|++....-.       .+.
T Consensus       115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~  194 (758)
T KOG1310|consen  115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILV  194 (758)
T ss_pred             CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHH
Confidence            9999999999742          1223334566688889999988 789999999999999998642211       010


Q ss_pred             c--CCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce------------------eeeeec-cc--------C
Q 016257          194 R--NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN------------------KIGHKR-LL--------R  244 (392)
Q Consensus       194 ~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~------------------~~~~~~-~~--------~  244 (392)
                      .  ..--...++..+|...+    +++.|+.+-..++||.+...                  ++..+. .|        .
T Consensus       195 ny~~~lielk~ltisp~rp~----~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~  270 (758)
T KOG1310|consen  195 NYNPQLIELKCLTISPSRPY----YLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD  270 (758)
T ss_pred             HhchhhheeeeeeecCCCCc----eEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence            0  01124678999998886    27899999999999954211                  111110 01        1


Q ss_pred             C---CcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeee
Q 016257          245 K---PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW  281 (392)
Q Consensus       245 ~---~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  281 (392)
                      .   .++-++|+|+|.-|++.-....|+++|+..++.+..
T Consensus       271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~  310 (758)
T KOG1310|consen  271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP  310 (758)
T ss_pred             cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence            1   245678999998777666566799999988765443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=7.7e-16  Score=138.86  Aligned_cols=222  Identities=19%  Similarity=0.172  Sum_probs=146.5

Q ss_pred             eeCCCCCeeEEEEcCCCCeEEEEeC---CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEE-eCCC
Q 016257           59 FDESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDG  134 (392)
Q Consensus        59 ~~~h~~~v~~~~~sp~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg  134 (392)
                      +..+...+...+|+|||+.|+..+.   +..+.+|++.+++... +..       ..+.+..+.|+|||+.|+.. +.+|
T Consensus       194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~-------~~~~~~~~~~SPDG~~La~~~~~~g  265 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VAS-------FPRHNGAPAFSPDGSKLAFALSKTG  265 (429)
T ss_pred             eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccC-------CCCCcCCeEECCCCCEEEEEEcCCC
Confidence            3445678999999999999887542   3568899987764221 111       12334568999999988865 3444


Q ss_pred             --cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCC-Cc--EEEEECCCCeeeEEEecCCCcceEEEEecCCC
Q 016257          135 --HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-GS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (392)
Q Consensus       135 --~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (392)
                        .|++||+++++.. .+..+...+....|+|||+.|+..+.+ +.  |+++|+.+++. ..+... ........|+|||
T Consensus       266 ~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~-~~~~~~~~~SpDG  342 (429)
T PRK03629        266 SLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWE-GSQNQDADVSSDG  342 (429)
T ss_pred             CcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecC-CCCccCEEECCCC
Confidence              5889999887654 344444567889999999988776653 44  55556666544 333322 2245678999999


Q ss_pred             CcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCc---EEEEecCCceeeeeeeccc
Q 016257          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD---ICVVDVKKMEINHWSKRLH  286 (392)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~  286 (392)
                      +.+++  .........|.+||+.+++.. .+.. ........|+|||+.|+..+.++.   +.++++..... ..+ ..|
T Consensus       343 ~~Ia~--~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~-~~l-~~~  416 (429)
T PRK03629        343 KFMVM--VSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARL-PAT  416 (429)
T ss_pred             CEEEE--EEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe-EEC-ccC
Confidence            97321  111122356899999887643 2322 223456789999999999887764   67777754443 333 345


Q ss_pred             cCcceEEEEEee
Q 016257          287 LGTSIALVEFCP  298 (392)
Q Consensus       287 ~~~~i~~~~~s~  298 (392)
                       .+.+...+|+|
T Consensus       417 -~~~~~~p~Wsp  427 (429)
T PRK03629        417 -DGQVKFPAWSP  427 (429)
T ss_pred             -CCCcCCcccCC
Confidence             67788899987

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=2.6e-17  Score=139.13  Aligned_cols=296  Identities=14%  Similarity=0.080  Sum_probs=209.7

Q ss_pred             eEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEeC
Q 016257           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGV  132 (392)
Q Consensus        55 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~  132 (392)
                      +...|..|.+.|..+.|+..|..|++|+.|..|.+||.........+..      .|...|....|-|  +...+++.+.
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S------GH~~NvfQaKFiP~s~d~ti~~~s~  207 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES------GHCNNVFQAKFIPFSGDRTIVTSSR  207 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccccc------ccccchhhhhccCCCCCcCceeccc
Confidence            3346889999999999999999999999999999999988876555543      3566677777877  4457899999


Q ss_pred             CCcEEEEeCCCCce---eecccCCCCcEEEEEecCCC-CeEEEEcCCCcEEEEECCCCeeeEEEec--CCC---cceEEE
Q 016257          133 DGHLRIMHWPSLRI---ILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTR--NSD---EKIELC  203 (392)
Q Consensus       133 dg~i~i~d~~~~~~---~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~--~~~---~~v~~~  203 (392)
                      ||.+++=.+.....   ...+..|+++|..++.-|+. ..|.+++.|+.+.-+|++.+.+...+..  ...   -....+
T Consensus       208 dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I  287 (559)
T KOG1334|consen  208 DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI  287 (559)
T ss_pred             cCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence            99999887643322   33456678899999999965 4589999999999999998765544432  112   146788


Q ss_pred             EecCCCCcceEEEEEEeCCccEEEEEeCCCceee------eeec------ccCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 016257          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI------GHKR------LLRKPASVLSISLDGKYLAMGSKDGDICVV  271 (392)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~------~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  271 (392)
                      +..|...+.    +++++.|..+++||.+.....      ..+.      ...-.|++++++.++.-|.+.-.|-.|+++
T Consensus       288 a~~P~nt~~----faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF  363 (559)
T KOG1334|consen  288 AVDPRNTNE----FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLF  363 (559)
T ss_pred             ecCCCCccc----cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEe
Confidence            888887753    689999999999998753221      1111      224579999999887766666778889999


Q ss_pred             ecCC--c----------eeeeeeecccc-CcceEEEEE-eeCCCeEEEEeCCCeEEEEEeecCcccccee-eeeeeeeee
Q 016257          272 DVKK--M----------EINHWSKRLHL-GTSIALVEF-CPTQRVVLTASKEWGAMITKLTVPADWKEWQ-IYSLLLALF  336 (392)
Q Consensus       272 d~~~--~----------~~~~~~~~~~~-~~~i~~~~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~  336 (392)
                      .-.-  +          ......+++|. ...|..+-| -|...++++|+.=|.|.||+-+..+-..... .....+++.
T Consensus       364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLE  443 (559)
T KOG1334|consen  364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLE  443 (559)
T ss_pred             ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccC
Confidence            5332  2          22223245662 234777764 6788899999999999999987664433221 111233332


Q ss_pred             e--eceEEEEeeecceeeeecccccc
Q 016257          337 L--ASAVVFYIFFENSDSFWNFPVAR  360 (392)
Q Consensus       337 ~--~~~~~~~~~~d~~i~~W~~~~~~  360 (392)
                      .  --.++++.+.|..|+||.-.+.+
T Consensus       444 pHP~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  444 PHPHLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             CCCCCchhhccCCccceeeecCCccc
Confidence            1  22366777889999999874433

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.74  E-value=7.2e-16  Score=143.97  Aligned_cols=270  Identities=11%  Similarity=0.069  Sum_probs=184.7

Q ss_pred             ccccCCceEEEeeCCCCCeeEEEEcCCC-CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCE
Q 016257           48 SVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSR  126 (392)
Q Consensus        48 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  126 (392)
                      .....+.+...+..|...+..++.++.. .++++|+.||+|++|++..-...................+.++...+.++.
T Consensus      1033 gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1033 GWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            3334566777888999999999988754 899999999999999997644321111111111113578899999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCc-------eeecccCC-CCcEEE-EEecC-CCC-eEEEEcCCCcEEEEECCCCeeeEEEecC
Q 016257          127 FAAGGVDGHLRIMHWPSLR-------IILDEPKA-HKSVLD-MDFSL-DSE-FLATTSTDGSARIWKTEDGVAWTFLTRN  195 (392)
Q Consensus       127 l~~~~~dg~i~i~d~~~~~-------~~~~~~~~-~~~i~~-i~~~~-~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~  195 (392)
                      +|+++.||.|++.+++...       +......+ .+.+.+ -+|.. .+. .++.+...+.|..||++......+++..
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            9999999999999986521       11111111 123333 34433 233 6778888899999999987665554422


Q ss_pred             -CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec-ccCCCcEEEEECCC---CCEEEEEe--CCCcE
Q 016257          196 -SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLD---GKYLAMGS--KDGDI  268 (392)
Q Consensus       196 -~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~---~~~l~~~~--~dg~i  268 (392)
                       ..+.|++++.+|.+.+     ++.|...|.+.+||+|-+.++.... .+..+++.+..+|-   ....++++  ..+.|
T Consensus      1193 ~~hG~vTSi~idp~~~W-----lviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNW-----LVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred             ccccceeEEEecCCceE-----EEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCce
Confidence             2347999999999998     8999999999999999888776554 34467777777763   34554444  46789


Q ss_pred             EEEecCCceeeeeeeccc-----------------cCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257          269 CVVDVKKMEINHWSKRLH-----------------LGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       269 ~iwd~~~~~~~~~~~~~~-----------------~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                      .+|++.++.....+....                 ..-......+..-+..+.+|+.|..|+.||...+..
T Consensus      1268 s~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             eeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence            999999986554442220                 011122233334456899999999999999886644

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.74  E-value=6.8e-18  Score=141.80  Aligned_cols=232  Identities=15%  Similarity=0.211  Sum_probs=189.8

Q ss_pred             CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe
Q 016257          114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT  193 (392)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  193 (392)
                      ....+.++.+|.+|+.|+..|.+..+|+.+++....+ .-...|.++.|-.+.+++|++- ...++|||- .|..++.+.
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei-~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHClk  207 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI-NVMETVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCLK  207 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeee-ehhhhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEeehh
Confidence            4578999999999999999999999999998876544 3345789999988888887775 478999995 677777776


Q ss_pred             cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEec
Q 016257          194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (392)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  273 (392)
                      .+.  .|..+.|-|..-.     +++++..|.+.--|+.+|+.+..+....+.+..+.-.|-+..+-+|..+|+|.+|..
T Consensus       208 ~~~--~v~rLeFLPyHfL-----L~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP  280 (545)
T KOG1272|consen  208 RHI--RVARLEFLPYHFL-----LVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP  280 (545)
T ss_pred             hcC--chhhhcccchhhe-----eeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCC
Confidence            543  5899999987543     799999999999999999999999888889999999999999999999999999999


Q ss_pred             CCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeeeeeeeeeeeeceEEEEeeecceeee
Q 016257          274 KKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSF  353 (392)
Q Consensus       274 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~  353 (392)
                      ...+++..+ ..| .++|.++++.++|++++|++.|..++|||++.-..+......+......+....++..+.-..+.+
T Consensus       281 ~skePLvKi-LcH-~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~i  358 (545)
T KOG1272|consen  281 NSKEPLVKI-LCH-RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQI  358 (545)
T ss_pred             CCcchHHHH-Hhc-CCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeee
Confidence            988887776 578 999999999999999999999999999999865544333332333333444445566666777999


Q ss_pred             eccc
Q 016257          354 WNFP  357 (392)
Q Consensus       354 W~~~  357 (392)
                      |.-.
T Consensus       359 w~d~  362 (545)
T KOG1272|consen  359 WKDA  362 (545)
T ss_pred             ehhh
Confidence            9643

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=6.8e-16  Score=127.28  Aligned_cols=223  Identities=13%  Similarity=0.118  Sum_probs=170.0

Q ss_pred             CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCC-EEEEEeCC--CcEEE
Q 016257           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVD--GHLRI  138 (392)
Q Consensus        62 h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d--g~i~i  138 (392)
                      ..++|..++.. | ..|++|-.+|.+.+|..+.+......    ...+.....+..+.-++... .+++|+..  ..+.+
T Consensus       104 ~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d~hss~----l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lki  177 (412)
T KOG3881|consen  104 GTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGDLHSSK----LIKLATGPGLYDVRQTDTDPYIVATGGKENINELKI  177 (412)
T ss_pred             ccccccchhhc-C-CEEEEEecCCcEEEEeccCCcccccc----ceeeecCCceeeeccCCCCCceEecCchhcccceee
Confidence            35566666654 3 37788889999999999865422111    11111234666777777444 55668888  78999


Q ss_pred             EeCCCCceeecccCCCC---------cEEEEEecCC--CCeEEEEcCCCcEEEEECCCC-eeeEEEecCCCcceEEEEec
Q 016257          139 MHWPSLRIILDEPKAHK---------SVLDMDFSLD--SEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFS  206 (392)
Q Consensus       139 ~d~~~~~~~~~~~~~~~---------~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~  206 (392)
                      ||+++.+++..-.....         .++++.|-+.  ...|++++.-+.+++||.+.+ +++..+... ..+++++...
T Consensus       178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-E~~is~~~l~  256 (412)
T KOG3881|consen  178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-ENPISSTGLT  256 (412)
T ss_pred             eecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc-cCcceeeeec
Confidence            99998876655443321         3678889886  788999999999999999865 466666544 4489999999


Q ss_pred             CCCCcceEEEEEEeCCccEEEEEeCCCceeeee-ecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecc
Q 016257          207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL  285 (392)
Q Consensus       207 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  285 (392)
                      |+++.     ++++..-+.+..||++.++.... +.+..+.++++..+|.+.++++++-|..|||+|+++.+++...+. 
T Consensus       257 p~gn~-----Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-  330 (412)
T KOG3881|consen  257 PSGNF-----IYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-  330 (412)
T ss_pred             CCCcE-----EEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-
Confidence            99997     78899999999999999998876 788889999999999999999999999999999999777665433 


Q ss_pred             ccCcceEEEEEeeC
Q 016257          286 HLGTSIALVEFCPT  299 (392)
Q Consensus       286 ~~~~~i~~~~~s~~  299 (392)
                        .+.++++-+.++
T Consensus       331 --Ks~lt~il~~~~  342 (412)
T KOG3881|consen  331 --KSRLTFILLRDD  342 (412)
T ss_pred             --hccccEEEecCC
Confidence              567777777654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.74  E-value=5.8e-16  Score=124.98  Aligned_cols=271  Identities=14%  Similarity=0.161  Sum_probs=178.7

Q ss_pred             eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCe-EEEEeCCC
Q 016257            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD-FVCSTTNG   85 (392)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~-l~~~~~d~   85 (392)
                      |.-+.|.-|...+..+        ...++.+++|++.        .+.....++.-+..+.++.|||||+. |.+...+-
T Consensus        51 i~yieW~ads~~ilC~--------~yk~~~vqvwsl~--------Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~l  114 (447)
T KOG4497|consen   51 IVYIEWKADSCHILCV--------AYKDPKVQVWSLV--------QPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDL  114 (447)
T ss_pred             hhheeeeccceeeeee--------eeccceEEEEEee--------cceeEEEeccCCCcceeeeECCCcceEeeeeccee
Confidence            4446677666442212        2246678899887        55566667777889999999999975 45667788


Q ss_pred             eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCc---EEEEeCCCCceeecccCCCCcEEEEEe
Q 016257           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH---LRIMHWPSLRIILDEPKAHKSVLDMDF  162 (392)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~~~i~~i~~  162 (392)
                      +|.+|.+.+.+......        ....+..++|+|||++.+..+....   +.|..-+....+..+....-..+.+.|
T Consensus       115 riTVWSL~t~~~~~~~~--------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieW  186 (447)
T KOG4497|consen  115 RITVWSLNTQKGYLLPH--------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEW  186 (447)
T ss_pred             EEEEEEeccceeEEecc--------cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceE
Confidence            99999998876432221        1345689999999999888765321   222111122222233333345788999


Q ss_pred             cCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee------
Q 016257          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK------  236 (392)
Q Consensus       163 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~------  236 (392)
                      +|||..|++         ||.--.-.+....  .+-.+..++|+|.++.     ++.|+.|+.+++.+--+.+.      
T Consensus       187 sPdg~~laV---------wd~~Leykv~aYe--~~lG~k~v~wsP~~qf-----lavGsyD~~lrvlnh~tWk~f~eflh  250 (447)
T KOG4497|consen  187 SPDGNWLAV---------WDNVLEYKVYAYE--RGLGLKFVEWSPCNQF-----LAVGSYDQMLRVLNHFTWKPFGEFLH  250 (447)
T ss_pred             CCCCcEEEE---------ecchhhheeeeee--eccceeEEEeccccce-----EEeeccchhhhhhceeeeeehhhhcc
Confidence            999987765         4322111111122  1224788899998886     78888898887755322110      


Q ss_pred             ------------------------------------------------------eeeec------ccCCCcEEEEECCCC
Q 016257          237 ------------------------------------------------------IGHKR------LLRKPASVLSISLDG  256 (392)
Q Consensus       237 ------------------------------------------------------~~~~~------~~~~~v~~~~~s~~~  256 (392)
                                                                            +..++      .....+.-++|++|.
T Consensus       251 l~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds  330 (447)
T KOG4497|consen  251 LCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS  330 (447)
T ss_pred             chhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc
Confidence                                                                  00011      112345678999999


Q ss_pred             CEEEEEeCC--CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257          257 KYLAMGSKD--GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       257 ~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      .++++-...  +.+.+||++..++...+.+   ..+|....|+|....|+.+.....+++|....+
T Consensus       331 ~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ---k~piraf~WdP~~prL~vctg~srLY~W~psg~  393 (447)
T KOG4497|consen  331 TYAATRNDKYPNALWLWDLQNLKLHAVLIQ---KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP  393 (447)
T ss_pred             eEEeeecCCCCceEEEEechhhhhhhhhhh---ccceeEEEeCCCCceEEEEcCCceEEEEcCCCc
Confidence            999987643  6799999999887766654   459999999999988888887888999987754

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=3.1e-15  Score=135.78  Aligned_cols=236  Identities=12%  Similarity=0.081  Sum_probs=154.7

Q ss_pred             eeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC---CCeEEEEEEeCCccceeeccccCCCCCCCC
Q 016257           37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQDAG  113 (392)
Q Consensus        37 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  113 (392)
                      -+||.++.++...       ..+..|...+.+.+|+|||+.|+..+.   +..|++||+.+++.. .+.       .+.+
T Consensus       182 ~~l~~~d~dg~~~-------~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~-------~~~g  246 (435)
T PRK05137        182 KRLAIMDQDGANV-------RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVG-------NFPG  246 (435)
T ss_pred             eEEEEECCCCCCc-------EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Eee-------cCCC
Confidence            4566666544322       235567889999999999999888753   467999999876532 111       1234


Q ss_pred             CeEEEEecCCCCEEE-EEeCCCc--EEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcC-CC--cEEEEECCCCe
Q 016257          114 PQKCLSFSVDGSRFA-AGGVDGH--LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGV  187 (392)
Q Consensus       114 ~v~~~~~s~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~vwd~~~~~  187 (392)
                      .+...+|+|||+.|+ +.+.++.  |++||+++++.. .+..+........|+|||+.|+..+. +|  .|+++|+..++
T Consensus       247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~  325 (435)
T PRK05137        247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN  325 (435)
T ss_pred             cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence            667889999999876 4455554  777788877653 34444445677899999998887663 33  58888887655


Q ss_pred             eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC--
Q 016257          188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD--  265 (392)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--  265 (392)
                      .. .+... ...+....|+|+|+.+++  ......+..|.+||+..+... .+. ....+..+.|+|||+.|+..+.+  
T Consensus       326 ~~-~lt~~-~~~~~~~~~SpdG~~ia~--~~~~~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~~i~~~~~~~~  399 (435)
T PRK05137        326 PR-RISFG-GGRYSTPVWSPRGDLIAF--TKQGGGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGRVIMFFRQTPG  399 (435)
T ss_pred             eE-EeecC-CCcccCeEECCCCCEEEE--EEcCCCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCCEEEEEEccCC
Confidence            43 33322 234667899999997321  111223357899998655432 222 23356788999999998776543  


Q ss_pred             ----CcEEEEecCCceeeeeeeccccCcceEEEEEee
Q 016257          266 ----GDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (392)
Q Consensus       266 ----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  298 (392)
                          ..+.++|+..++... +.  . .+.+...+|+|
T Consensus       400 ~~~~~~L~~~dl~g~~~~~-l~--~-~~~~~~p~Wsp  432 (435)
T PRK05137        400 SGGAPKLYTVDLTGRNERE-VP--T-PGDASDPAWSP  432 (435)
T ss_pred             CCCcceEEEEECCCCceEE-cc--C-CCCccCcccCC
Confidence                257888887765533 22  1 34567778876

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.73  E-value=2.2e-13  Score=119.58  Aligned_cols=274  Identities=16%  Similarity=0.213  Sum_probs=181.2

Q ss_pred             CcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC----CCeEEEEEEeCCccceeeccccCCC
Q 016257           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT----NGGCKLFEVYGGATDINLLAKKMPP  108 (392)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~----d~~i~iw~~~~~~~~~~~~~~~~~~  108 (392)
                      ..+.|.+|.+|.....+..  .  ..+. -......++++|++++|++...    ++.|..|++..............  
T Consensus        11 ~~~gI~~~~~d~~~g~l~~--~--~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~--   83 (345)
T PF10282_consen   11 KGGGIYVFRFDEETGTLTL--V--QTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP--   83 (345)
T ss_dssp             SSTEEEEEEEETTTTEEEE--E--EEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE--
T ss_pred             CCCcEEEEEEcCCCCCceE--e--eeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec--
Confidence            3567999999877655532  1  1121 2456788999999999998876    56899999987621111111110  


Q ss_pred             CCCCCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCC-ceeec--cc-----------CCCCcEEEEEecCCCCeEEEEc
Q 016257          109 LQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSL-RIILD--EP-----------KAHKSVLDMDFSLDSEFLATTS  173 (392)
Q Consensus       109 ~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~-~~~~~--~~-----------~~~~~i~~i~~~~~~~~l~~~~  173 (392)
                       ........++++|++++|+++.. +|.+.++++... .....  ..           .......++.++|+++++++..
T Consensus        84 -~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d  162 (345)
T PF10282_consen   84 -SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD  162 (345)
T ss_dssp             -ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred             -cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe
Confidence             02345678999999999998874 899999999763 32211  11           1123578999999999888764


Q ss_pred             C-CCcEEEEECCCCe--e--eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC--Cce--eeeeeccc-
Q 016257          174 T-DGSARIWKTEDGV--A--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWN--KIGHKRLL-  243 (392)
Q Consensus       174 ~-d~~i~vwd~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~--~~~--~~~~~~~~-  243 (392)
                      . ...|.+|++....  .  ...+........+.++|+|+++++    .+....++.|.++++.  .++  .+...... 
T Consensus       163 lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~----Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~  238 (345)
T PF10282_consen  163 LGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYA----YVVNELSNTVSVFDYDPSDGSLTEIQTISTLP  238 (345)
T ss_dssp             TTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEE----EEEETTTTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred             cCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEE----EEecCCCCcEEEEeecccCCceeEEEEeeecc
Confidence            3 3579999997654  2  233444555568999999999974    3566778999999988  332  22222211 


Q ss_pred             -----CCCcEEEEECCCCCEEEEEe-CCCcEEEEecC--Ccee--eeeeeccccCcceEEEEEeeCCCeEEEEe-CCCeE
Q 016257          244 -----RKPASVLSISLDGKYLAMGS-KDGDICVVDVK--KMEI--NHWSKRLHLGTSIALVEFCPTQRVVLTAS-KEWGA  312 (392)
Q Consensus       244 -----~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i  312 (392)
                           ......++++|||++|+++. ..+.|.+|++.  ++++  +..+.. . ......++++|+|++|+++. .++.|
T Consensus       239 ~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-~-G~~Pr~~~~s~~g~~l~Va~~~s~~v  316 (345)
T PF10282_consen  239 EGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-G-GKFPRHFAFSPDGRYLYVANQDSNTV  316 (345)
T ss_dssp             TTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-S-SSSEEEEEE-TTSSEEEEEETTTTEE
T ss_pred             ccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-C-CCCccEEEEeCCCCEEEEEecCCCeE
Confidence                 12577899999999998876 45679999993  2333  222221 1 44589999999999988877 56899


Q ss_pred             EEEEeecC
Q 016257          313 MITKLTVP  320 (392)
Q Consensus       313 ~iw~~~~~  320 (392)
                      .+|+++..
T Consensus       317 ~vf~~d~~  324 (345)
T PF10282_consen  317 SVFDIDPD  324 (345)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEeCC
Confidence            99999743

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.8e-15  Score=123.68  Aligned_cols=232  Identities=17%  Similarity=0.180  Sum_probs=159.2

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeC
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHW  141 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~  141 (392)
                      +..+..++|++.-..+|++..|..|++|+-.. .....+..      .....|++++|-|. ++.|++|+..| |.+|..
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks------~sQrnvtclawRPlsaselavgCr~g-IciW~~  169 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKS------VSQRNVTCLAWRPLSASELAVGCRAG-ICIWSD  169 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecc------hhhcceeEEEeccCCcceeeeeecce-eEEEEc
Confidence            34678899999777888999999999999766 32222221      12468999999994 55677777554 899976


Q ss_pred             CCC----ce-------eeccc--CCCCcEEEEEecCCCCeEEEEcC-CCcEEEEECCCCeeeEEEecCCCcceEEEEecC
Q 016257          142 PSL----RI-------ILDEP--KAHKSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK  207 (392)
Q Consensus       142 ~~~----~~-------~~~~~--~~~~~i~~i~~~~~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  207 (392)
                      ...    ..       ..++.  ..+..|+++.|.+||..+++++- |..|.|||..++..+....... +.+.-+.|+|
T Consensus       170 s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~gl-gg~slLkwSP  248 (445)
T KOG2139|consen  170 SRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGL-GGFSLLKWSP  248 (445)
T ss_pred             CcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCC-CceeeEEEcC
Confidence            421    11       01111  22358999999999999999884 5789999999887765543333 3588999999


Q ss_pred             CCCcceEEEEEEeCCccEEEEEeCC-CceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce---------
Q 016257          208 DGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME---------  277 (392)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------  277 (392)
                      |+..     ++.+.-|+..++|... +.... ......+.|....|+|+|++|...+. |.-++|.+.-..         
T Consensus       249 dgd~-----lfaAt~davfrlw~e~q~wt~e-rw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~  321 (445)
T KOG2139|consen  249 DGDV-----LFAATCDAVFRLWQENQSWTKE-RWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQ  321 (445)
T ss_pred             CCCE-----EEEecccceeeeehhcccceec-ceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcc
Confidence            9998     7888899999999554 33333 23333558999999999998776553 334455442110         


Q ss_pred             ---eeeee--------ecc--ccCcceEEEEEeeCCCeEEEEeCCC
Q 016257          278 ---INHWS--------KRL--HLGTSIALVEFCPTQRVVLTASKEW  310 (392)
Q Consensus       278 ---~~~~~--------~~~--~~~~~i~~~~~s~~~~~l~~~~~dg  310 (392)
                         ....+        ..+  -..+++.+++|.|.|.+|++.-..+
T Consensus       322 ~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~  367 (445)
T KOG2139|consen  322 SIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ  367 (445)
T ss_pred             cceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence               00000        000  0156889999999999999876653

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=2.9e-15  Score=129.46  Aligned_cols=289  Identities=11%  Similarity=0.074  Sum_probs=206.3

Q ss_pred             CCCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCC--CCeeEEEEcCCCCeEE
Q 016257            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE--GDPMTIAVNPSGDDFV   79 (392)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~sp~~~~l~   79 (392)
                      |....-+.+.-+||+++  ++++|..      ...|++|.+.        ..  ...|.-|.  ..|.-.-.+.|-..++
T Consensus        49 e~p~ast~ik~s~DGqY--~lAtG~Y------KP~ikvydla--------nL--SLKFERhlDae~V~feiLsDD~SK~v  110 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQY--LLATGTY------KPQIKVYDLA--------NL--SLKFERHLDAEVVDFEILSDDYSKSV  110 (703)
T ss_pred             CCccccceeEecCCCcE--EEEeccc------CCceEEEEcc--------cc--eeeeeecccccceeEEEeccchhhhe
Confidence            44556678889999987  6777766      4458888876        22  22344443  3344444455555555


Q ss_pred             EEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEE
Q 016257           80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD  159 (392)
Q Consensus        80 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~  159 (392)
                      .-..|.+|.+...........          -...-..++++.-..-|++++....|+-++++.|+-+..+....+.+++
T Consensus       111 ~L~~DR~IefHak~G~hy~~R----------IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~  180 (703)
T KOG2321|consen  111 FLQNDRTIEFHAKYGRHYRTR----------IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNV  180 (703)
T ss_pred             EeecCceeeehhhcCeeeeee----------cCcCCccccccCCCccEEEeecCcceEEEEcccccccccccccccccee
Confidence            556777776654322111111          1123356677654434555555667899999999887766666678999


Q ss_pred             EEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCC----------cceEEEEecCCCCcceEEEEEEeCCccEEEEE
Q 016257          160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (392)
Q Consensus       160 i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~  229 (392)
                      +..++-..+|++|+.+|.|..||.+....+.++.....          ..|+++.|+.+|-.     ++.|...|.+.+|
T Consensus       181 v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~-----~aVGts~G~v~iy  255 (703)
T KOG2321|consen  181 VSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH-----VAVGTSTGSVLIY  255 (703)
T ss_pred             eeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCcee-----EEeeccCCcEEEE
Confidence            99999999999999999999999998777666643221          24899999999887     8999999999999


Q ss_pred             eCCCceeeeee-cccCCCcEEEEECCC--CCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEE
Q 016257          230 DISTWNKIGHK-RLLRKPASVLSISLD--GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA  306 (392)
Q Consensus       230 d~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  306 (392)
                      |+++.+++... .....+|..+.|.+.  ++.+++. ....++|||-.+|+....+..   ...+..+++-|++.+++++
T Consensus       256 DLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sGm~f~A  331 (703)
T KOG2321|consen  256 DLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSGMFFTA  331 (703)
T ss_pred             EcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc---cCCcCceeeecCCceEEEe
Confidence            99998876332 223457888999775  3455554 356799999999998887644   4579999999999999999


Q ss_pred             eCCCeEEEEEeecCcccccee
Q 016257          307 SKEWGAMITKLTVPADWKEWQ  327 (392)
Q Consensus       307 ~~dg~i~iw~~~~~~~~~~~~  327 (392)
                      ..++.+..|-+....+.+.|.
T Consensus       332 ne~~~m~~yyiP~LGPaPrWC  352 (703)
T KOG2321|consen  332 NESSKMHTYYIPSLGPAPRWC  352 (703)
T ss_pred             cCCCcceeEEccccCCCchhh
Confidence            999999999888776666663

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=3.2e-15  Score=134.99  Aligned_cols=236  Identities=17%  Similarity=0.154  Sum_probs=148.3

Q ss_pred             eeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEEeCCccceeeccccCCCCCCCC
Q 016257           37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAG  113 (392)
Q Consensus        37 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  113 (392)
                      .++|.++.++...       ..+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +..       ..+
T Consensus       176 ~~L~~~D~dG~~~-------~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~-------~~g  240 (427)
T PRK02889        176 YQLQISDADGQNA-------QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VAN-------FKG  240 (427)
T ss_pred             cEEEEECCCCCCc-------eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eec-------CCC
Confidence            4577776544322       2244567889999999999999877643   359999998775321 111       123


Q ss_pred             CeEEEEecCCCCEEEE-EeCCCcEEEEe--CCCCceeecccCCCCcEEEEEecCCCCeEEEEcC-CCcEEEEEC--CCCe
Q 016257          114 PQKCLSFSVDGSRFAA-GGVDGHLRIMH--WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKT--EDGV  187 (392)
Q Consensus       114 ~v~~~~~s~~~~~l~~-~~~dg~i~i~d--~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~vwd~--~~~~  187 (392)
                      .+...+|+|||+.|+. .+.++...+|.  +.++. ...+..+........|+|||+.|+..+. ++...+|.+  ..++
T Consensus       241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~  319 (427)
T PRK02889        241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA  319 (427)
T ss_pred             CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence            4568999999998874 56677766665  44443 3344444445567889999998876553 456666654  4443


Q ss_pred             eeEEEecCCCcceEEEEecCCCCcceEEEEEEeC--CccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC
Q 016257          188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG--DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD  265 (392)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  265 (392)
                      .. .+... .......+|+|+|+.++    +++.  ....|.+||+.+++.... .. ......+.|+|||+.|+..+.+
T Consensus       320 ~~-~lt~~-g~~~~~~~~SpDG~~Ia----~~s~~~g~~~I~v~d~~~g~~~~l-t~-~~~~~~p~~spdg~~l~~~~~~  391 (427)
T PRK02889        320 AQ-RVTFT-GSYNTSPRISPDGKLLA----YISRVGGAFKLYVQDLATGQVTAL-TD-TTRDESPSFAPNGRYILYATQQ  391 (427)
T ss_pred             eE-EEecC-CCCcCceEECCCCCEEE----EEEccCCcEEEEEEECCCCCeEEc-cC-CCCccCceECCCCCEEEEEEec
Confidence            32 22222 12345678999999732    2222  234799999988765432 22 2334678999999998887754


Q ss_pred             C---cEEEEecCCceeeeeeeccccCcceEEEEEeeC
Q 016257          266 G---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (392)
Q Consensus       266 g---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  299 (392)
                      +   .+.+.++. ++....+ ..+ .+.+...+|+|-
T Consensus       392 ~g~~~l~~~~~~-g~~~~~l-~~~-~g~~~~p~wsp~  425 (427)
T PRK02889        392 GGRSVLAAVSSD-GRIKQRL-SVQ-GGDVREPSWGPF  425 (427)
T ss_pred             CCCEEEEEEECC-CCceEEe-ecC-CCCCCCCccCCC
Confidence            3   35566664 4444333 234 567788888873

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.72  E-value=7.4e-17  Score=130.04  Aligned_cols=220  Identities=12%  Similarity=0.130  Sum_probs=156.2

Q ss_pred             EEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEE-EeCCCcEEEEeCCCCce
Q 016257           68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSLRI  146 (392)
Q Consensus        68 ~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~  146 (392)
                      -..|||+|+++|+.++. ++.|-|.++-+....+..        -..|..+.|..|..++++ ...++.|.+|++...+-
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c--------ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew   83 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC--------LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW   83 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH--------HHHhhheeeeccceeeeeeeeccceEEEEEeeccee
Confidence            36799999999998776 688888887764333322        135677899988877655 46788999999998888


Q ss_pred             eecccCCCCcEEEEEecCCCCeE-EEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCC-c-
Q 016257          147 ILDEPKAHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-K-  223 (392)
Q Consensus       147 ~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-d-  223 (392)
                      ..++.....++.++.|||||+.| .+..-+-.|.+|.+.+.+....-  +....+..++|+|||++     .+..+. | 
T Consensus        84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~--~pK~~~kg~~f~~dg~f-----~ai~sRrDC  156 (447)
T KOG4497|consen   84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP--HPKTNVKGYAFHPDGQF-----CAILSRRDC  156 (447)
T ss_pred             EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec--ccccCceeEEECCCCce-----eeeeecccH
Confidence            77788888899999999999665 45667889999999877664432  23335789999999996     233322 2 


Q ss_pred             -cEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCe
Q 016257          224 -ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV  302 (392)
Q Consensus       224 -~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  302 (392)
                       ..+.+..-.....++.+....-..+.+.|+|||..||+         ||---.-.+...   |.+-.+..++|+|.+++
T Consensus       157 kdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aY---e~~lG~k~v~wsP~~qf  224 (447)
T KOG4497|consen  157 KDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAY---ERGLGLKFVEWSPCNQF  224 (447)
T ss_pred             HHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeee---eeccceeEEEeccccce
Confidence             12222222333445556666667889999999988775         432211111111   11457889999999999


Q ss_pred             EEEEeCCCeEEEE
Q 016257          303 VLTASKEWGAMIT  315 (392)
Q Consensus       303 l~~~~~dg~i~iw  315 (392)
                      |+.|+.|+.+|+.
T Consensus       225 lavGsyD~~lrvl  237 (447)
T KOG4497|consen  225 LAVGSYDQMLRVL  237 (447)
T ss_pred             EEeeccchhhhhh
Confidence            9999999999874

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=3.9e-15  Score=134.95  Aligned_cols=220  Identities=18%  Similarity=0.166  Sum_probs=144.9

Q ss_pred             eeCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEE-EeCCC
Q 016257           59 FDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDG  134 (392)
Q Consensus        59 ~~~h~~~v~~~~~sp~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg  134 (392)
                      +..|...+.+.+|+|||+.|+..+.+   ..|++||+.+++... +.       ...+...+.+|+|||+.|+. .+.+|
T Consensus       199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~-------~~~g~~~~~~~SpDG~~l~~~~s~~g  270 (433)
T PRK04922        199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VA-------SFRGINGAPSFSPDGRRLALTLSRDG  270 (433)
T ss_pred             eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-ec-------cCCCCccCceECCCCCEEEEEEeCCC
Confidence            45567789999999999999987643   469999997765321 11       11234457899999998764 45555


Q ss_pred             --cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEc-CCCc--EEEEECCCCeeeEEEecCCCcceEEEEecCCC
Q 016257          135 --HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (392)
Q Consensus       135 --~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (392)
                        .|++||+.+++.. .+..+.......+|+|||+.|+.++ .++.  |+++|+.+++... +... ......++|+|+|
T Consensus       271 ~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~-g~~~~~~~~SpDG  347 (433)
T PRK04922        271 NPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQ-GNYNARASVSPDG  347 (433)
T ss_pred             CceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecC-CCCccCEEECCCC
Confidence              5999999887654 3444444456789999999888766 3444  6677776665433 2222 2234578999999


Q ss_pred             CcceEEEEEEeCC--ccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeec
Q 016257          210 TKPFLFCTVQRGD--KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKR  284 (392)
Q Consensus       210 ~~~~~~~~~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~  284 (392)
                      +.++    ++...  ...|.+||+.+++.. .+. +........|+|||++++..+.+   +.|.++++..... ..+ .
T Consensus       348 ~~Ia----~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~-~~l-~  419 (433)
T PRK04922        348 KKIA----MVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVR-QRL-V  419 (433)
T ss_pred             CEEE----EEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce-EEc-c
Confidence            9732    22222  347999999887654 332 22244567999999998877653   3578888865443 333 2


Q ss_pred             cccCcceEEEEEee
Q 016257          285 LHLGTSIALVEFCP  298 (392)
Q Consensus       285 ~~~~~~i~~~~~s~  298 (392)
                      .+ .+.+..++|+|
T Consensus       420 ~~-~g~~~~p~wsp  432 (433)
T PRK04922        420 SA-DGEVREPAWSP  432 (433)
T ss_pred             cC-CCCCCCCccCC
Confidence            33 45677788876

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.72  E-value=1.4e-15  Score=121.06  Aligned_cols=151  Identities=19%  Similarity=0.272  Sum_probs=110.1

Q ss_pred             EEEEecCCCCeEEEEcC----------CCcEEEEECCC-CeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEE
Q 016257          158 LDMDFSLDSEFLATTST----------DGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALL  226 (392)
Q Consensus       158 ~~i~~~~~~~~l~~~~~----------d~~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i  226 (392)
                      ..+.|+|+|++|+.-..          -+...+|.++. +.....+.....++|..++|+|++..+.   ++.+..+..|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~fa---vi~g~~~~~v   85 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFA---VIYGSMPAKV   85 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEE---EEEccCCccc
Confidence            35789999987765332          13455666532 3445555544455799999999998722   4556667899


Q ss_pred             EEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeE
Q 016257          227 AVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV  303 (392)
Q Consensus       227 ~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  303 (392)
                      .+||++ ++.+..+.  ...+..+.|+|+|++|++++.+   |.|.+||.++.+.+....    ...++.++|+|||++|
T Consensus        86 ~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~WsPdGr~~  158 (194)
T PF08662_consen   86 TLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWSPDGRYL  158 (194)
T ss_pred             EEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEcCCCCEE
Confidence            999997 45554443  5677899999999999998743   669999999888876642    3457899999999999


Q ss_pred             EEEeC------CCeEEEEEee
Q 016257          304 LTASK------EWGAMITKLT  318 (392)
Q Consensus       304 ~~~~~------dg~i~iw~~~  318 (392)
                      +++..      |+.++||++.
T Consensus       159 ~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  159 ATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             EEEEeccceeccccEEEEEec
Confidence            98875      5666777665

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.7e-14  Score=130.11  Aligned_cols=206  Identities=15%  Similarity=0.081  Sum_probs=138.1

Q ss_pred             eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC---CCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (392)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~  162 (392)
                      .|.++|....... .+.       .+...+...+|||||+.|+..+.   +..+++|++.+++... +....+.+....|
T Consensus       180 ~l~~~d~dg~~~~-~lt-------~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~  250 (429)
T PRK03629        180 ELRVSDYDGYNQF-VVH-------RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAF  250 (429)
T ss_pred             eEEEEcCCCCCCE-Eee-------cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEE
Confidence            5888887655421 111       13457899999999999887542   3579999998876432 2223334557899


Q ss_pred             cCCCCeEEEE-cCCC--cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCcc--EEEEEeCCCceee
Q 016257          163 SLDSEFLATT-STDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDISTWNKI  237 (392)
Q Consensus       163 ~~~~~~l~~~-~~d~--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~--~i~v~d~~~~~~~  237 (392)
                      +|||+.|+.. +.++  .|++||+++++... +... ...+....|+||++.+    ++++..++  .|.++|+.+++..
T Consensus       251 SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~-~~~~~~~~wSPDG~~I----~f~s~~~g~~~Iy~~d~~~g~~~  324 (429)
T PRK03629        251 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDG-RSNNTEPTWFPDSQNL----AYTSDQAGRPQVYKVNINGGAPQ  324 (429)
T ss_pred             CCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCC-CCCcCceEECCCCCEE----EEEeCCCCCceEEEEECCCCCeE
Confidence            9999988765 4444  58899998776543 3322 2357789999999972    23333333  5666677765443


Q ss_pred             eeecccCCCcEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCe
Q 016257          238 GHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWG  311 (392)
Q Consensus       238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  311 (392)
                       .+...........|+|||++|+..+.+   ..|.+||+.+++..... .   ........|+|||++|+.++.++.
T Consensus       325 -~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt-~---~~~~~~p~~SpDG~~i~~~s~~~~  396 (429)
T PRK03629        325 -RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT-D---TFLDETPSIAPNGTMVIYSSSQGM  396 (429)
T ss_pred             -EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC-C---CCCCCCceECCCCCEEEEEEcCCC
Confidence             333334455678999999999876643   35888999888754432 2   223456789999999999988865

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.70  E-value=4.7e-15  Score=122.36  Aligned_cols=250  Identities=15%  Similarity=0.157  Sum_probs=181.1

Q ss_pred             CCCeeEEEEcCCCC--eEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEe
Q 016257           63 EGDPMTIAVNPSGD--DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (392)
Q Consensus        63 ~~~v~~~~~sp~~~--~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d  140 (392)
                      ...|..++|.-+++  .+...+.+..+..+................ ..-..++|..++.. |+ .|++|-.+|.+.+|.
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~-~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~  131 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKT-VSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRH  131 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccc-cccccccccchhhc-CC-EEEEEecCCcEEEEe
Confidence            45788888876554  444444666677777766554333211000 01124566666654 34 677778899999999


Q ss_pred             CCCCce---eecccCCCCcEEEEEecCCCC-eEEEEcCC--CcEEEEECCCCeeeEEEecCC--------CcceEEEEec
Q 016257          141 WPSLRI---ILDEPKAHKSVLDMDFSLDSE-FLATTSTD--GSARIWKTEDGVAWTFLTRNS--------DEKIELCRFS  206 (392)
Q Consensus       141 ~~~~~~---~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d--~~i~vwd~~~~~~~~~~~~~~--------~~~v~~~~~~  206 (392)
                      .+.+..   .........++..+.-++... .+++|+..  ..+.+||++..+.+.+-....        .-+++.+.|-
T Consensus       132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl  211 (412)
T KOG3881|consen  132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL  211 (412)
T ss_pred             ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence            884431   111222334677777777554 45568887  789999999875554433221        1246778888


Q ss_pred             CC--CCcceEEEEEEeCCccEEEEEeCCCc-eeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee
Q 016257          207 KD--GTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (392)
Q Consensus       207 ~~--~~~~~~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  283 (392)
                      +.  ...     ++++..-+.+++||.+.+ +++..+.....+++++...|+++++++|..-|.+..||+++++......
T Consensus       212 ~g~~~~~-----fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~  286 (412)
T KOG3881|consen  212 EGSPNYK-----FATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL  286 (412)
T ss_pred             CCCCCce-----EEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecccc
Confidence            77  444     799999999999999965 4567777778999999999999999999999999999999999888755


Q ss_pred             ccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCc
Q 016257          284 RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (392)
Q Consensus       284 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  321 (392)
                      .+- .+.|+++..+|.+++++++|-|..+||+|+.+..
T Consensus       287 kg~-tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  287 KGI-TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK  323 (412)
T ss_pred             CCc-cCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence            666 8999999999999999999999999999998743

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.6e-14  Score=128.22  Aligned_cols=292  Identities=15%  Similarity=0.150  Sum_probs=204.1

Q ss_pred             CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCC-------ceEEEeeCCCCCeeEEEEcCCC
Q 016257            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSP-------LVTYVFDESEGDPMTIAVNPSG   75 (392)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~-------~~~~~~~~h~~~v~~~~~sp~~   75 (392)
                      -+.+..|++|+.+..   +++.||.      ++.+++..++.++......+       .+.+++.||.+.|.-+.|+.+.
T Consensus        13 nnvkL~c~~WNke~g---yIAcgG~------dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~   83 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESG---YIACGGA------DGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN   83 (1189)
T ss_pred             CCceEEEEEEcccCC---eEEeccc------cceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc
Confidence            367899999999874   5776666      77799999987766554433       4567899999999999999999


Q ss_pred             CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCC
Q 016257           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK  155 (392)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  155 (392)
                      +.|-++..+|.|.+|-+..+.........     ...+-|.+++|+.||..++....||.|.+=.++..+.-.+... ..
T Consensus        84 QKLTtSDt~GlIiVWmlykgsW~EEMiNn-----RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk-g~  157 (1189)
T KOG2041|consen   84 QKLTTSDTSGLIIVWMLYKGSWCEEMINN-----RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK-GQ  157 (1189)
T ss_pred             ccccccCCCceEEEEeeecccHHHHHhhC-----cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc-hh
Confidence            99999999999999999887643333221     2456889999999999999999999998877765433221111 12


Q ss_pred             cEEEEEecCCCCeEEEEcCCCcEEEEECCCCe-------eeEEEe---cCCCcceEEEEec--------CCCCcceEEEE
Q 016257          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-------AWTFLT---RNSDEKIELCRFS--------KDGTKPFLFCT  217 (392)
Q Consensus       156 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~-------~~~~~~---~~~~~~v~~~~~~--------~~~~~~~~~~~  217 (392)
                      ....+.|++|.+.++.+-.+|.+.++|.+..-       +.....   ......+..+.|.        |+...     +
T Consensus       158 ~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~-----l  232 (1189)
T KOG2041|consen  158 LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPR-----L  232 (1189)
T ss_pred             eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCE-----E
Confidence            35578999999999989899999999976421       111111   1112235555554        35444     6


Q ss_pred             EEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCC---------cEEEEecCCceeeeeeeccccC
Q 016257          218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG---------DICVVDVKKMEINHWSKRLHLG  288 (392)
Q Consensus       218 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~  288 (392)
                      +.+-..|.+.+..-.+......+. ....+....|+++|..||+++.+.         .|.+|.. -|+....+. .. .
T Consensus       233 avcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlk-vp-g  308 (1189)
T KOG2041|consen  233 AVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLK-VP-G  308 (1189)
T ss_pred             EEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEe-cC-C
Confidence            777777777776544333222222 236788899999999999988642         4555543 345444442 34 7


Q ss_pred             cceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          289 TSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       289 ~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      ..|++++|-..|-.++.+ .|+.|.+-+++.
T Consensus       309 ~~It~lsWEg~gLriA~A-vdsfiyfanIRP  338 (1189)
T KOG2041|consen  309 SCITGLSWEGTGLRIAIA-VDSFIYFANIRP  338 (1189)
T ss_pred             ceeeeeEEcCCceEEEEE-ecceEEEEeecc
Confidence            899999998777666665 477888877763

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.69  E-value=8.3e-17  Score=144.48  Aligned_cols=240  Identities=15%  Similarity=0.195  Sum_probs=172.2

Q ss_pred             CCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee
Q 016257          109 LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA  188 (392)
Q Consensus       109 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~  188 (392)
                      ..|..+|+|+.|...|.++++|+.|..++||.++++.+.....+|.+.|+.++.+.++.++++++.|..|++|.+..+.+
T Consensus       187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p  266 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP  266 (1113)
T ss_pred             HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeee---ecc-----------------------
Q 016257          189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH---KRL-----------------------  242 (392)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~---~~~-----------------------  242 (392)
                      +..+.+|.+ .|++++|+|-         .+.+.||++++||.+-...+..   ...                       
T Consensus       267 vsvLrghtg-avtaiafsP~---------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~  336 (1113)
T KOG0644|consen  267 VSVLRGHTG-AVTAIAFSPR---------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR  336 (1113)
T ss_pred             HHHHhcccc-ceeeeccCcc---------ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence            998887765 7999999995         4678899999999881110000   000                       


Q ss_pred             ----cCCCcEEEEECCCCCEEEE-----------EeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCC-eEEEE
Q 016257          243 ----LRKPASVLSISLDGKYLAM-----------GSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTA  306 (392)
Q Consensus       243 ----~~~~v~~~~~s~~~~~l~~-----------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~  306 (392)
                          ......+++|..++-.+++           .-.+-.+++|++.++.+.... .+| ...+..+.++|-+. ...++
T Consensus       337 d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l-~gh-sd~~yvLd~Hpfn~ri~msa  414 (1113)
T KOG0644|consen  337 DGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL-MGH-SDEVYVLDVHPFNPRIAMSA  414 (1113)
T ss_pred             CcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh-ccc-ccceeeeeecCCCcHhhhhc
Confidence                0011112223222222333           333456788888888877766 578 88999999999665 55689


Q ss_pred             eCCCeEEEEEeecCccccceee--eeeeeeeeeeceEEEEee-ecceeeeecccccc
Q 016257          307 SKEWGAMITKLTVPADWKEWQI--YSLLLALFLASAVVFYIF-FENSDSFWNFPVAR  360 (392)
Q Consensus       307 ~~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~d~~i~~W~~~~~~  360 (392)
                      +.||+..|||+-.+.+.+.+..  .....+.+...+.-+... .-|.+++....-++
T Consensus       415 g~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  415 GYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             cCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence            9999999999987765544421  122333333333222222 23455555544433

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=4.1e-14  Score=128.43  Aligned_cols=204  Identities=14%  Similarity=0.061  Sum_probs=138.2

Q ss_pred             eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC---CCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (392)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~  162 (392)
                      .|.++|...... ..+.       .+...+...+|+|||+.|+..+.   +..|++||+.+++.. .+....+.+...+|
T Consensus       183 ~l~~~d~dg~~~-~~lt-------~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~  253 (435)
T PRK05137        183 RLAIMDQDGANV-RYLT-------DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRF  253 (435)
T ss_pred             EEEEECCCCCCc-EEEe-------cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEE
Confidence            677888754432 2221       24568999999999999888763   467999999887653 33344556778899


Q ss_pred             cCCCCeEE-EEcCCCc--EEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCC--ccEEEEEeCCCceee
Q 016257          163 SLDSEFLA-TTSTDGS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD--KALLAVYDISTWNKI  237 (392)
Q Consensus       163 ~~~~~~l~-~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--d~~i~v~d~~~~~~~  237 (392)
                      +|||+.|+ +.+.++.  |++||+++++.. .+..+ ........|+||++.++    +++..  ...|+++|+..++..
T Consensus       254 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~-~~~~~~~~~spDG~~i~----f~s~~~g~~~Iy~~d~~g~~~~  327 (435)
T PRK05137        254 SPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDS-PAIDTSPSYSPDGSQIV----FESDRSGSPQLYVMNADGSNPR  327 (435)
T ss_pred             CCCCCEEEEEEecCCCceEEEEECCCCceE-EccCC-CCccCceeEcCCCCEEE----EEECCCCCCeEEEEECCCCCeE
Confidence            99998875 4555554  777898876553 34333 23466789999999732    22222  347889998766543


Q ss_pred             eeecccCCCcEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC
Q 016257          238 GHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE  309 (392)
Q Consensus       238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  309 (392)
                       .+......+....|+|||++|+....+   ..|.+||+.++.... +..   ...+..+.|+|||+.|+..+.+
T Consensus       328 -~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~-lt~---~~~~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        328 -RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERI-LTS---GFLVEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             -EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEe-ccC---CCCCCCCeECCCCCEEEEEEcc
Confidence             333334556678999999999887643   358888986655432 222   2356788999999988776553

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.68  E-value=1.9e-13  Score=110.17  Aligned_cols=191  Identities=19%  Similarity=0.250  Sum_probs=135.4

Q ss_pred             EEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCC-ccce
Q 016257           21 LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG-ATDI   99 (392)
Q Consensus        21 ~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~-~~~~   99 (392)
                      ++.+||+...--.+|++-||+ |...     .+.....+   ..+|.++.+.++  .|++.. .+.|+||...+. +...
T Consensus        61 laLVGGg~~pky~pNkviIWD-D~k~-----~~i~el~f---~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~  128 (346)
T KOG2111|consen   61 LALVGGGSRPKYPPNKVIIWD-DLKE-----RCIIELSF---NSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLH  128 (346)
T ss_pred             EEEecCCCCCCCCCceEEEEe-cccC-----cEEEEEEe---ccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhhee
Confidence            444455543345688888887 2211     23333333   578999999876  566654 455999999744 3222


Q ss_pred             eeccccCCCCCCCCCeEEEEecCCCCEEEE-EeCCCcEEEEeCCCCce--eecccCCCCcEEEEEecCCCCeEEEEcCCC
Q 016257          100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDG  176 (392)
Q Consensus       100 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~  176 (392)
                      .+....     ......+++-..+..+||. |-.-|.|+|-|+...+.  ...+..|...|.+++.+.+|..+|++|..|
T Consensus       129 ~~et~~-----NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG  203 (346)
T KOG2111|consen  129 VIETRS-----NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKG  203 (346)
T ss_pred             eeeccc-----CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCc
Confidence            222211     1223344443334555555 34569999999976554  456778888999999999999999999999


Q ss_pred             c-EEEEECCCCeeeEEEecCC-CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257          177 S-ARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (392)
Q Consensus       177 ~-i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~  233 (392)
                      + |+|||.++++.+..+..+. ...|++++|+|+..+     ++.+++.|++.++.++.
T Consensus       204 TLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~-----LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  204 TLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW-----LAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE-----EEEEcCCCeEEEEEeec
Confidence            7 8999999999999987543 457999999999998     89999999999999875

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.68  E-value=1.2e-14  Score=115.82  Aligned_cols=150  Identities=17%  Similarity=0.174  Sum_probs=107.3

Q ss_pred             EEEEecCCCCEEEEEeC----------CCcEEEEeCCCC-ceeecc-cCCCCcEEEEEecCCCCeEEEE--cCCCcEEEE
Q 016257          116 KCLSFSVDGSRFAAGGV----------DGHLRIMHWPSL-RIILDE-PKAHKSVLDMDFSLDSEFLATT--STDGSARIW  181 (392)
Q Consensus       116 ~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~-~~~~~~-~~~~~~i~~i~~~~~~~~l~~~--~~d~~i~vw  181 (392)
                      ..+.|+|+|++|++-..          -+...+|.++.. .....+ ....++|.+++|+|+++.|++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            56889999988776432          133555555322 222222 2234479999999999987654  456799999


Q ss_pred             ECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEe---CCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCE
Q 016257          182 KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR---GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY  258 (392)
Q Consensus       182 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~  258 (392)
                      |++ ++.+..+.   ...+..+.|+|+|+.     ++.+   ...|.|.+||.++.+.+.....  ..++.++|+|+|++
T Consensus        89 d~~-~~~i~~~~---~~~~n~i~wsP~G~~-----l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~  157 (194)
T PF08662_consen   89 DVK-GKKIFSFG---TQPRNTISWSPDGRF-----LVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRY  157 (194)
T ss_pred             cCc-ccEeEeec---CCCceEEEECCCCCE-----EEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCE
Confidence            996 66666654   236789999999997     3443   3457899999998888766543  35789999999999


Q ss_pred             EEEEeC------CCcEEEEecCCc
Q 016257          259 LAMGSK------DGDICVVDVKKM  276 (392)
Q Consensus       259 l~~~~~------dg~i~iwd~~~~  276 (392)
                      |++++.      |+.++||+....
T Consensus       158 ~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  158 LATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             EEEEEeccceeccccEEEEEecCe
Confidence            999874      678999998643

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=1.3e-15  Score=129.08  Aligned_cols=288  Identities=14%  Similarity=0.133  Sum_probs=208.9

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCC--CCeEEEE
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVCS   81 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--~~~l~~~   81 (392)
                      .|-|..|.|+..+   .++++|+.      +-.+.+|.|......+       .-..||...|..-.|-|.  .+.++++
T Consensus       142 ~GcVntV~FN~~G---d~l~SgSD------D~~vv~WdW~~~~~~l-------~f~SGH~~NvfQaKFiP~s~d~ti~~~  205 (559)
T KOG1334|consen  142 KGCVNTVHFNQRG---DVLASGSD------DLQVVVWDWVSGSPKL-------SFESGHCNNVFQAKFIPFSGDRTIVTS  205 (559)
T ss_pred             CCccceeeecccC---ceeeccCc------cceEEeehhhccCccc-------ccccccccchhhhhccCCCCCcCceec
Confidence            3668888999887   45776666      5568899987443222       123578889998899884  4579999


Q ss_pred             eCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeecc---cCCCC--
Q 016257           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDE---PKAHK--  155 (392)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~--  155 (392)
                      +.||.+++=.+.........    ....+|.++|..++.-|+ ...|.+++.|+.+.-+|++.+.....+   .....  
T Consensus       206 s~dgqvr~s~i~~t~~~e~t----~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~  281 (559)
T KOG1334|consen  206 SRDGQVRVSEILETGYVENT----KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKER  281 (559)
T ss_pred             cccCceeeeeeccccceecc----eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccc
Confidence            99999998776544332211    122348899999999995 457899999999999999876543222   22222  


Q ss_pred             -cEEEEEecCCCC-eEEEEcCCCcEEEEECCCCee------eEEEec-----CCCcceEEEEecCCCCcceEEEEEEeCC
Q 016257          156 -SVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVA------WTFLTR-----NSDEKIELCRFSKDGTKPFLFCTVQRGD  222 (392)
Q Consensus       156 -~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~------~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~  222 (392)
                       ....++.+|... .+++++.|..+++||.+.-..      +.++..     .....|++++|+.++..     ++++-.
T Consensus       282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE-----lLaSYn  356 (559)
T KOG1334|consen  282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE-----LLASYN  356 (559)
T ss_pred             eeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc-----eeeeec
Confidence             568899999554 799999999999999874221      222221     22346899999988776     677777


Q ss_pred             ccEEEEEeCCC--c----------eeee-eecccCC--CcEEEEE-CCCCCEEEEEeCCCcEEEEecCCceeeeeeeccc
Q 016257          223 KALLAVYDIST--W----------NKIG-HKRLLRK--PASVLSI-SLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH  286 (392)
Q Consensus       223 d~~i~v~d~~~--~----------~~~~-~~~~~~~--~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  286 (392)
                      |-.|+++.-..  +          ..+. .+++|..  .|..+.| -|...|+++|+.-|.|.||+-++++.++.+. +.
T Consensus       357 De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me-gD  435 (559)
T KOG1334|consen  357 DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME-GD  435 (559)
T ss_pred             ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh-cc
Confidence            88899995432  1          1112 2556643  4666655 5788999999999999999999999988774 44


Q ss_pred             cCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          287 LGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       287 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                       ..-|+|+.=+|--..||+++-|.-|+||.-.
T Consensus       436 -r~VVNCLEpHP~~PvLAsSGid~DVKIWTP~  466 (559)
T KOG1334|consen  436 -RHVVNCLEPHPHLPVLASSGIDHDVKIWTPL  466 (559)
T ss_pred             -cceEeccCCCCCCchhhccCCccceeeecCC
Confidence             4589999999999999999999999999774

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=1.2e-14  Score=131.39  Aligned_cols=188  Identities=21%  Similarity=0.195  Sum_probs=125.1

Q ss_pred             CCCCeEEEEecCCCCEEEEEeCC---CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEE-EEcCCCcEEEEE--CC
Q 016257          111 DAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWK--TE  184 (392)
Q Consensus       111 ~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~vwd--~~  184 (392)
                      +...+.+.+|+|||+.|+..+.+   ..|++||+.+++... +....+.+....|+|||+.|+ +.+.++...+|.  +.
T Consensus       194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~  272 (427)
T PRK02889        194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD  272 (427)
T ss_pred             CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence            45678899999999999887643   359999998887543 333334567889999999876 466777766665  44


Q ss_pred             CCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEE--eCCCceeeeeecccCCCcEEEEECCCCCEEEEE
Q 016257          185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY--DISTWNKIGHKRLLRKPASVLSISLDGKYLAMG  262 (392)
Q Consensus       185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  262 (392)
                      .+. ...+..+ ........|+|||+.+    ++++..++...+|  ++.+++.. .+..........+|||||++|+..
T Consensus       273 ~~~-~~~lt~~-~~~~~~~~wSpDG~~l----~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~  345 (427)
T PRK02889        273 GSG-LRRLTQS-SGIDTEPFFSPDGRSI----YFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYI  345 (427)
T ss_pred             CCC-cEECCCC-CCCCcCeEEcCCCCEE----EEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEE
Confidence            433 3444333 2345678899999973    2233334444455  55554432 222223334468999999999887


Q ss_pred             eCCC---cEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCC
Q 016257          263 SKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW  310 (392)
Q Consensus       263 ~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  310 (392)
                      +.++   .|.+||+.+++..... .   ......+.|+|||+.|+.++.++
T Consensus       346 s~~~g~~~I~v~d~~~g~~~~lt-~---~~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        346 SRVGGAFKLYVQDLATGQVTALT-D---TTRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             EccCCcEEEEEEECCCCCeEEcc-C---CCCccCceECCCCCEEEEEEecC
Confidence            7654   5999999988765433 2   22346789999999888877654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=1.1e-15  Score=131.25  Aligned_cols=209  Identities=15%  Similarity=0.189  Sum_probs=151.9

Q ss_pred             CCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeccc-CCCCcEEEEEecC--CCCeEEEEcCCCcEEEEECCC
Q 016257          109 LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-KAHKSVLDMDFSL--DSEFLATTSTDGSARIWKTED  185 (392)
Q Consensus       109 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~--~~~~l~~~~~d~~i~vwd~~~  185 (392)
                      ..|.+-|+++.|+.+|.+|++|+.|-.+.|||.-..+.+..+. +|...|.++.|-|  +.+.+++|..|..|+++|+..
T Consensus        47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~  126 (758)
T KOG1310|consen   47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS  126 (758)
T ss_pred             ccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence            3589999999999999999999999999999998777665554 4556899999998  557899999999999999974


Q ss_pred             C----------eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceee----------eeecccCC
Q 016257          186 G----------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI----------GHKRLLRK  245 (392)
Q Consensus       186 ~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~----------~~~~~~~~  245 (392)
                      .          .....+..|. ..|..++-.|++...    +.++++||+|+-||++....-          ......--
T Consensus       127 ~~~~~~d~~~~~~~~~~~cht-~rVKria~~p~~Pht----fwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  127 SKEGGMDHGMEETTRCWSCHT-DRVKRIATAPNGPHT----FWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             ccccccccCccchhhhhhhhh-hhhhheecCCCCCce----EEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            2          2223333443 368889999999663    689999999999999863211          01111123


Q ss_pred             CcEEEEECCC-CCEEEEEeCCCcEEEEecCC--------ce----------eeeeeecccc----------CcceEEEEE
Q 016257          246 PASVLSISLD-GKYLAMGSKDGDICVVDVKK--------ME----------INHWSKRLHL----------GTSIALVEF  296 (392)
Q Consensus       246 ~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~--------~~----------~~~~~~~~~~----------~~~i~~~~~  296 (392)
                      ...++.++|. ..+|++|+.|-..++||.+.        +.          +...+..+|.          ...++-+.|
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf  281 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF  281 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence            4568899995 47899999999999999432        11          1222222331          123677899


Q ss_pred             eeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257          297 CPTQRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       297 s~~~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                      +|+|.-|+..-..-.|+++++...+.
T Consensus       282 npNGtElLvs~~gEhVYlfdvn~~~~  307 (758)
T KOG1310|consen  282 NPNGTELLVSWGGEHVYLFDVNEDKS  307 (758)
T ss_pred             CCCCcEEEEeeCCeEEEEEeecCCCC
Confidence            99998555544444899999986654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=2.3e-14  Score=129.90  Aligned_cols=213  Identities=19%  Similarity=0.147  Sum_probs=139.3

Q ss_pred             CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC---CcEEEEeCCCCceeecccCCCCcEEEEE
Q 016257           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (392)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~  161 (392)
                      .+|.+||..... ...+.       .+...+...+|+|||+.|+..+.+   ..|++||+.+++... +....+......
T Consensus       184 ~~l~i~D~~g~~-~~~lt-------~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~  254 (433)
T PRK04922        184 YALQVADSDGYN-PQTIL-------RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPS  254 (433)
T ss_pred             EEEEEECCCCCC-ceEee-------cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCce
Confidence            358888875443 22221       245678899999999999987643   469999998876542 223334455789


Q ss_pred             ecCCCCeEE-EEcCCC--cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCcc--EEEEEeCCCcee
Q 016257          162 FSLDSEFLA-TTSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDISTWNK  236 (392)
Q Consensus       162 ~~~~~~~l~-~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~--~i~v~d~~~~~~  236 (392)
                      |+|||+.|+ +.+.++  .|++||+.+++.. .+..+ ......++|+||++.+    ++++..++  .|+++|+.+++.
T Consensus       255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~-~~~~~~~~~spDG~~l----~f~sd~~g~~~iy~~dl~~g~~  328 (433)
T PRK04922        255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNH-FGIDTEPTWAPDGKSI----YFTSDRGGRPQIYRVAASGGSA  328 (433)
T ss_pred             ECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccC-CCCccceEECCCCCEE----EEEECCCCCceEEEEECCCCCe
Confidence            999999776 445555  5999999877643 33332 2245678999999972    23333333  477778776654


Q ss_pred             eeeecccCCCcEEEEECCCCCEEEEEeCCC---cEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC-CeE
Q 016257          237 IGHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WGA  312 (392)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i  312 (392)
                      . .+.........++|+|||++|+..+.++   .|.+||+.+++..... .   ........|+|||++|+..+.+ +.-
T Consensus       329 ~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt-~---~~~~~~p~~spdG~~i~~~s~~~g~~  403 (433)
T PRK04922        329 E-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT-P---GSLDESPSFAPNGSMVLYATREGGRG  403 (433)
T ss_pred             E-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC-C---CCCCCCceECCCCCEEEEEEecCCce
Confidence            3 2222333455789999999998876443   5999999888765332 2   2244567999999988776653 333


Q ss_pred             EEEEe
Q 016257          313 MITKL  317 (392)
Q Consensus       313 ~iw~~  317 (392)
                      .+|.+
T Consensus       404 ~L~~~  408 (433)
T PRK04922        404 VLAAV  408 (433)
T ss_pred             EEEEE
Confidence            34433

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.66  E-value=8.6e-15  Score=125.59  Aligned_cols=144  Identities=19%  Similarity=0.278  Sum_probs=112.0

Q ss_pred             CCCeeEEEEcCCC-CeEEEEeCCCeEEEEEEeCCccc-------------eeecc---ccC-CC----CCCCCCeEEEEe
Q 016257           63 EGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATD-------------INLLA---KKM-PP----LQDAGPQKCLSF  120 (392)
Q Consensus        63 ~~~v~~~~~sp~~-~~l~~~~~d~~i~iw~~~~~~~~-------------~~~~~---~~~-~~----~~~~~~v~~~~~  120 (392)
                      +..|+|+.|-|.+ ..++++-.+|.++++|.......             ..+..   ... .+    .-..+.|+..+|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            4789999999954 46667788999999986422110             00000   000 00    012457899999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcce
Q 016257          121 SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKI  200 (392)
Q Consensus       121 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v  200 (392)
                      +|||++||+.+.||.+||+|..+.+.+..+...-+...|++|||||++|++|++|.-|.||.+..++.+..-++| ..+|
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH-kSWV  377 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH-KSWV  377 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc-ccce
Confidence            999999999999999999999988877666667788999999999999999999999999999999888877765 5599


Q ss_pred             EEEEecC
Q 016257          201 ELCRFSK  207 (392)
Q Consensus       201 ~~~~~~~  207 (392)
                      ..++|.|
T Consensus       378 s~VaFDp  384 (636)
T KOG2394|consen  378 SVVAFDP  384 (636)
T ss_pred             eeEeecc
Confidence            9999983

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=1.3e-13  Score=119.36  Aligned_cols=276  Identities=14%  Similarity=0.080  Sum_probs=187.6

Q ss_pred             CCCCCeeEEEEcCCCCeE-EEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 016257           61 ESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (392)
Q Consensus        61 ~h~~~v~~~~~sp~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~  139 (392)
                      +|...-+.|..+|||+|+ |+|..--.|++||+.+....  +...     -....|.-.-++.|-..++.-..|.+|.+.
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERh-----lDae~V~feiLsDD~SK~v~L~~DR~IefH  121 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERH-----LDAEVVDFEILSDDYSKSVFLQNDRTIEFH  121 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeec-----ccccceeEEEeccchhhheEeecCceeeeh
Confidence            467888999999999975 56777888999999765432  2111     023455555566666666666778777665


Q ss_pred             eCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEE
Q 016257          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (392)
Q Consensus       140 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (392)
                      ..- |... .+ .-...-.+++++.-..-|+.++....|+-++++.|..+..+.... +.++++..++....     +++
T Consensus       122 ak~-G~hy-~~-RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~-~~lN~v~in~~hgL-----la~  192 (703)
T KOG2321|consen  122 AKY-GRHY-RT-RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS-GELNVVSINEEHGL-----LAC  192 (703)
T ss_pred             hhc-Ceee-ee-ecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccccc-ccceeeeecCccce-----EEe
Confidence            421 2111 00 111223456665533335555555779999999999888887654 46999999998775     788


Q ss_pred             eCCccEEEEEeCCCceeeeeecc------cC-----CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccC
Q 016257          220 RGDKALLAVYDISTWNKIGHKRL------LR-----KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLG  288 (392)
Q Consensus       220 ~~~d~~i~v~d~~~~~~~~~~~~------~~-----~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  288 (392)
                      |+.+|.+..||.+....+..+..      +.     ..|+++.|+.+|-.+++|+.+|.+.|||+++.+++.....+. .
T Consensus       193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~-e  271 (703)
T KOG2321|consen  193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGY-E  271 (703)
T ss_pred             cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCC-c
Confidence            88899999999998765544432      22     249999999999999999999999999999998877665555 7


Q ss_pred             cceEEEEEeeC--CCeEEEEeCCCeEEEEEeecCccccceeeeee--eeeeeeeceEEEEeeecceeeee
Q 016257          289 TSIALVEFCPT--QRVVLTASKEWGAMITKLTVPADWKEWQIYSL--LLALFLASAVVFYIFFENSDSFW  354 (392)
Q Consensus       289 ~~i~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~i~~W  354 (392)
                      -+|..+.|.+.  +..+++. ....++||+-..++..........  ..+....++..+++.-...+..+
T Consensus       272 ~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  272 LPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY  340 (703)
T ss_pred             cceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence            79999999876  3345544 446899999988776654433222  23334455566666544444333

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.62  E-value=1.7e-11  Score=107.67  Aligned_cols=275  Identities=15%  Similarity=0.177  Sum_probs=169.4

Q ss_pred             eeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC-CCe
Q 016257            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGG   86 (392)
Q Consensus         8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~-d~~   86 (392)
                      ..++++|++.. ..++....    ...+.|..|.++.++..+.  ..  ............++++|++++|+++.. +|.
T Consensus        40 s~l~~~~~~~~-LY~~~e~~----~~~g~v~~~~i~~~~g~L~--~~--~~~~~~g~~p~~i~~~~~g~~l~vany~~g~  110 (345)
T PF10282_consen   40 SWLAVSPDGRR-LYVVNEGS----GDSGGVSSYRIDPDTGTLT--LL--NSVPSGGSSPCHIAVDPDGRFLYVANYGGGS  110 (345)
T ss_dssp             CCEEE-TTSSE-EEEEETTS----STTTEEEEEEEETTTTEEE--EE--EEEEESSSCEEEEEECTTSSEEEEEETTTTE
T ss_pred             ceEEEEeCCCE-EEEEEccc----cCCCCEEEEEECCCcceeE--Ee--eeeccCCCCcEEEEEecCCCEEEEEEccCCe
Confidence            34667777644 22221111    1366788888887643331  11  122223456778999999999998874 889


Q ss_pred             EEEEEEeCCccceeecc-------ccCCCCCCCCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCCc--ee--ecc-cCC
Q 016257           87 CKLFEVYGGATDINLLA-------KKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLR--II--LDE-PKA  153 (392)
Q Consensus        87 i~iw~~~~~~~~~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~--~~--~~~-~~~  153 (392)
                      +.++++...........       ......+......++.|+|+++++++... ...|++|++....  ..  ... ...
T Consensus       111 v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~  190 (345)
T PF10282_consen  111 VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP  190 (345)
T ss_dssp             EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST
T ss_pred             EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc
Confidence            99999987432222110       00111123456889999999998887653 4579999997655  21  111 223


Q ss_pred             CCcEEEEEecCCCCeEEEEc-CCCcEEEEECC--CCe--eeEEEecC---C--CcceEEEEecCCCCcceEEEEEEeCCc
Q 016257          154 HKSVLDMDFSLDSEFLATTS-TDGSARIWKTE--DGV--AWTFLTRN---S--DEKIELCRFSKDGTKPFLFCTVQRGDK  223 (392)
Q Consensus       154 ~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~--~~~--~~~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (392)
                      ......+.|+|+++++++.. .+++|.++++.  +++  .+..+...   .  ......++++||++++    .++....
T Consensus       191 G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~l----yvsnr~~  266 (345)
T PF10282_consen  191 GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFL----YVSNRGS  266 (345)
T ss_dssp             TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEE----EEEECTT
T ss_pred             CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEE----EEEeccC
Confidence            34688999999999876654 56789999988  332  22222211   1  1257889999999974    3556668


Q ss_pred             cEEEEEeCCC--c--eeeeeecccCCCcEEEEECCCCCEEEEEeC-CCcEEEEec--CCceeeeeeeccccCcceEEEEE
Q 016257          224 ALLAVYDIST--W--NKIGHKRLLRKPASVLSISLDGKYLAMGSK-DGDICVVDV--KKMEINHWSKRLHLGTSIALVEF  296 (392)
Q Consensus       224 ~~i~v~d~~~--~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~--~~~~~~~~~~~~~~~~~i~~~~~  296 (392)
                      +.|.+|++..  +  +.+..........+.++++|+|++|+++.. ++.|.+|++  ++|++...-.... .....|+.|
T Consensus       267 ~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~-~~~p~ci~f  345 (345)
T PF10282_consen  267 NSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVP-IPSPVCIVF  345 (345)
T ss_dssp             TEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEE-SSSEEEEEE
T ss_pred             CEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEeccccc-CCCCEEEeC
Confidence            8999999942  2  233344444455789999999999998874 568999976  4666555432222 456666665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=7.2e-13  Score=119.19  Aligned_cols=242  Identities=17%  Similarity=0.117  Sum_probs=145.4

Q ss_pred             eeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCe--E-EEEeCCC--eEEEEEEeCCccceeeccccCCCCCC
Q 016257           37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD--F-VCSTTNG--GCKLFEVYGGATDINLLAKKMPPLQD  111 (392)
Q Consensus        37 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~--l-~~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~  111 (392)
                      -.||..+.++...       ..+..........+|+|||+.  + ++...++  .|.+.++.+++.. .+..       .
T Consensus       165 ~~l~~~d~dG~~~-------~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~-------~  229 (428)
T PRK01029        165 GELWSVDYDGQNL-------RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILA-------L  229 (428)
T ss_pred             ceEEEEcCCCCCc-------eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-Eeec-------C
Confidence            4577777655432       123334566788899999975  3 2444443  4677777665422 1111       1


Q ss_pred             CCCeEEEEecCCCCEEEEEeC-CC----cEEEEeCCCC--ceeecccCCC-CcEEEEEecCCCCeEEEEc-CCCcEEEE-
Q 016257          112 AGPQKCLSFSVDGSRFAAGGV-DG----HLRIMHWPSL--RIILDEPKAH-KSVLDMDFSLDSEFLATTS-TDGSARIW-  181 (392)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~-dg----~i~i~d~~~~--~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~-~d~~i~vw-  181 (392)
                      .+.....+|||||+.|+..+. +|    .+..|++..+  .....+.... ......+|+|||+.|+..+ .+|...+| 
T Consensus       230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~  309 (428)
T PRK01029        230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI  309 (428)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence            234456899999998887653 22    3444676643  1222222222 3346789999999877665 46655555 


Q ss_pred             -ECCC-CeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEE
Q 016257          182 -KTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL  259 (392)
Q Consensus       182 -d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  259 (392)
                       ++.. +.....+.... ..+....|+|||+.+++  .........|.+||+.+++... +......+....|+|||+.|
T Consensus       310 ~~~~~~g~~~~~lt~~~-~~~~~p~wSPDG~~Laf--~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L  385 (428)
T PRK01029        310 MQIDPEGQSPRLLTKKY-RNSSCPAWSPDGKKIAF--CSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHL  385 (428)
T ss_pred             EECcccccceEEeccCC-CCccceeECCCCCEEEE--EEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEE
Confidence             4432 22333343332 35678899999997321  1111223579999999887643 33233456789999999988


Q ss_pred             EEEeC---CCcEEEEecCCceeeeeeeccccCcceEEEEEeeCC
Q 016257          260 AMGSK---DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (392)
Q Consensus       260 ~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  300 (392)
                      +..+.   ...|+++|+.+++......  . .+.+...+|+|-.
T Consensus       386 ~f~~~~~g~~~L~~vdl~~g~~~~Lt~--~-~g~~~~p~Ws~~~  426 (428)
T PRK01029        386 VYSAGNSNESELYLISLITKKTRKIVI--G-SGEKRFPSWGAFP  426 (428)
T ss_pred             EEEECCCCCceEEEEECCCCCEEEeec--C-CCcccCceecCCC
Confidence            76543   3568899998887655442  2 4567788888753

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.62  E-value=8.9e-13  Score=115.60  Aligned_cols=274  Identities=13%  Similarity=0.129  Sum_probs=170.6

Q ss_pred             CeEE-EEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCC
Q 016257           76 DDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (392)
Q Consensus        76 ~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  154 (392)
                      ++++ +-..++.|.+.|..+.+...++...       ...-..+.|+|||+++++++.||.|.++|+.+.+.+.+.....
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~-------~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~   78 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTG-------GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG   78 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-S-------TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCC-------CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC
Confidence            3443 4456899999999887766555431       1122457899999999999999999999999999887765543


Q ss_pred             CcEEEEEecCCCCeEEEEc-CCCcEEEEECCCCeeeEEEecC------CCcceEEEEecCCCCcceEEEEEEeCCccEEE
Q 016257          155 KSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTRN------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (392)
Q Consensus       155 ~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~  227 (392)
                       ...++++++||++++++. .++.+.++|.++.+.++.+...      ....+..+..+|.... +   +++--+.+.|.
T Consensus        79 -~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~-f---Vv~lkd~~~I~  153 (369)
T PF02239_consen   79 -NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE-F---VVNLKDTGEIW  153 (369)
T ss_dssp             -EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE-E---EEEETTTTEEE
T ss_pred             -CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCE-E---EEEEccCCeEE
Confidence             467899999999988775 6799999999999998887543      2235677888888774 1   45556668898


Q ss_pred             EEeCCCceeee-eecccCCCcEEEEECCCCCEEEEE-eCCCcEEEEecCCceeeeeeecc------------cc------
Q 016257          228 VYDISTWNKIG-HKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEINHWSKRL------------HL------  287 (392)
Q Consensus       228 v~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~------------~~------  287 (392)
                      +.|....+.+. .............|+|++++++++ ..++.|-++|.++++....+..+            |.      
T Consensus       154 vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw  233 (369)
T PF02239_consen  154 VVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVW  233 (369)
T ss_dssp             EEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEE
T ss_pred             EEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEE
Confidence            98987654432 222234567789999999987765 45567888888877654432100            00      


Q ss_pred             ----------------------------------CcceEEEEEeeCCCeEEEE----eCCCeEEEEEeecCcccc-----
Q 016257          288 ----------------------------------GTSIALVEFCPTQRVVLTA----SKEWGAMITKLTVPADWK-----  324 (392)
Q Consensus       288 ----------------------------------~~~i~~~~~s~~~~~l~~~----~~dg~i~iw~~~~~~~~~-----  324 (392)
                                                        .+.-..+..+|+++++.+.    ...+.|.++|....+...     
T Consensus       234 ~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~  313 (369)
T PF02239_consen  234 ATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPG  313 (369)
T ss_dssp             EEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHH
T ss_pred             eeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEecc
Confidence                                              1111445678999998887    445899999998764322     


Q ss_pred             ----ceeeeeeeeeeeeeceEEEEee-e-cceeeeecccccccccCCC
Q 016257          325 ----EWQIYSLLLALFLASAVVFYIF-F-ENSDSFWNFPVARNQHGGP  366 (392)
Q Consensus       325 ----~~~~~~~~~~~~~~~~~~~~~~-~-d~~i~~W~~~~~~~~~~~p  366 (392)
                          ..+..+...+     ..+.... . ++.|.++|..+.+.....|
T Consensus       314 ~~~~~~h~ef~~dG-----~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  314 PGKRVVHMEFNPDG-----KEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             HT--EEEEEE-TTS-----SEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             CCCcEeccEECCCC-----CEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence                1122333322     2222222 2 3379999999988776655

...

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.62  E-value=1.6e-11  Score=101.29  Aligned_cols=274  Identities=15%  Similarity=0.216  Sum_probs=183.0

Q ss_pred             cCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEEeCCccceeeccccCCCCC
Q 016257           34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQ  110 (392)
Q Consensus        34 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~  110 (392)
                      ...|.+|.++.....+..     ..+-.+.+.++-++|+|+++.|+++..+   |.|..|.+........+......   
T Consensus        15 s~gI~v~~ld~~~g~l~~-----~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~---   86 (346)
T COG2706          15 SQGIYVFNLDTKTGELSL-----LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL---   86 (346)
T ss_pred             CCceEEEEEeCcccccch-----hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc---
Confidence            556899999966654432     2233467889999999999999988655   66888888764222232221111   


Q ss_pred             CCCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCC-Ccee--ecccCCCC----------cEEEEEecCCCCeEEEEcC-C
Q 016257          111 DAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPS-LRII--LDEPKAHK----------SVLDMDFSLDSEFLATTST-D  175 (392)
Q Consensus       111 ~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~-~~~~--~~~~~~~~----------~i~~i~~~~~~~~l~~~~~-d  175 (392)
                      ...+...++++++|++++++.. .|.|.++-++. |...  .....|.+          .+....+.|++++|++... -
T Consensus        87 ~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~  166 (346)
T COG2706          87 PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT  166 (346)
T ss_pred             CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC
Confidence            2234488999999999998875 58899998865 3221  11122222          2788899999999988763 2


Q ss_pred             CcEEEEECCCCeeeEE--EecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc--e--eeeeecc------c
Q 016257          176 GSARIWKTEDGVAWTF--LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW--N--KIGHKRL------L  243 (392)
Q Consensus       176 ~~i~vwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~--~--~~~~~~~------~  243 (392)
                      ..|.+|++..++....  .....+...+.++|+|+++..|    +..--+++|.+|..+..  +  .++.+..      .
T Consensus       167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY----~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g  242 (346)
T COG2706         167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAY----LVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG  242 (346)
T ss_pred             ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEE----EEeccCCEEEEEEEcCCCceEEEeeeeccCccccCC
Confidence            4699999987754322  1123344578999999999743    45566889999988763  2  1222211      1


Q ss_pred             CCCcEEEEECCCCCEEEEEeC-CCcEEEEecCC--ceeeeee-eccccCcceEEEEEeeCCCeEEEEeCC-CeEEEEEee
Q 016257          244 RKPASVLSISLDGKYLAMGSK-DGDICVVDVKK--MEINHWS-KRLHLGTSIALVEFCPTQRVVLTASKE-WGAMITKLT  318 (392)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~--~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iw~~~  318 (392)
                      .....++.++|||++|+++.. ...|.+|.+..  +++.... ...+ ........|+++|++|+++..+ ..|.++.++
T Consensus       243 ~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te-g~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         243 TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE-GQFPRDFNINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-CcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence            346678999999999998864 34688887653  4332221 1223 4458899999999998888764 578999887


Q ss_pred             cC
Q 016257          319 VP  320 (392)
Q Consensus       319 ~~  320 (392)
                      ..
T Consensus       322 ~~  323 (346)
T COG2706         322 KE  323 (346)
T ss_pred             CC
Confidence            43

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=7.2e-13  Score=120.58  Aligned_cols=239  Identities=14%  Similarity=0.083  Sum_probs=149.0

Q ss_pred             ceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEEeCCccceeeccccCCCCCCC
Q 016257           36 VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDA  112 (392)
Q Consensus        36 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~  112 (392)
                      .-++|..+.++...       ..+..+...+....|+|||+.|+..+.+   ..|.+|++.+++... +.       ...
T Consensus       178 ~~~l~~~d~~g~~~-------~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~-------~~~  242 (430)
T PRK00178        178 RYTLQRSDYDGARA-------VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-IT-------NFE  242 (430)
T ss_pred             ceEEEEECCCCCCc-------eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-cc-------CCC
Confidence            34577766554321       2344567789999999999999876543   368889987765321 11       112


Q ss_pred             CCeEEEEecCCCCEEEE-EeCCC--cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcC-CC--cEEEEECCCC
Q 016257          113 GPQKCLSFSVDGSRFAA-GGVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDG  186 (392)
Q Consensus       113 ~~v~~~~~s~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~vwd~~~~  186 (392)
                      +.+....|+|||+.|+. .+.+|  .|+++|+++++.. .+..+........|+|||+.|+..+. ++  .|+++++.++
T Consensus       243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g  321 (430)
T PRK00178        243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG  321 (430)
T ss_pred             CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            34457899999998874 44444  5888899887654 34444445667889999998776553 33  5777888777


Q ss_pred             eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC-
Q 016257          187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD-  265 (392)
Q Consensus       187 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-  265 (392)
                      +........  .......|+|+++.+++  .........|.++|+.+++... +.. ........|+|||+.++..+.+ 
T Consensus       322 ~~~~lt~~~--~~~~~~~~Spdg~~i~~--~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~  395 (430)
T PRK00178        322 RAERVTFVG--NYNARPRLSADGKTLVM--VHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQ  395 (430)
T ss_pred             CEEEeecCC--CCccceEECCCCCEEEE--EEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecC
Confidence            643322211  23446789999997321  1111223468899998876532 222 2223356899999998877654 


Q ss_pred             --CcEEEEecCCceeeeeeeccccCcceEEEEEeeC
Q 016257          266 --GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (392)
Q Consensus       266 --g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  299 (392)
                        ..|.++++...... .+. .+ .+.+...+|+|-
T Consensus       396 g~~~l~~~~~~g~~~~-~l~-~~-~g~~~~p~ws~~  428 (430)
T PRK00178        396 GRGVLMLVSINGRVRL-PLP-TA-QGEVREPSWSPY  428 (430)
T ss_pred             CceEEEEEECCCCceE-ECc-CC-CCCcCCCccCCC
Confidence              34677777544332 222 23 456777888763

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=1.2e-12  Score=118.67  Aligned_cols=222  Identities=16%  Similarity=0.141  Sum_probs=137.5

Q ss_pred             eeCCCCCeeEEEEcCCCCeEEEEeC-CC--eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEE-EeCCC
Q 016257           59 FDESEGDPMTIAVNPSGDDFVCSTT-NG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDG  134 (392)
Q Consensus        59 ~~~h~~~v~~~~~sp~~~~l~~~~~-d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg  134 (392)
                      +..+...+.+..|+|||+.|+..+. ++  .|++||+.+++... +..       ..+.....+|+|||+.|+. .+.++
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~-------~~g~~~~~~wSPDG~~La~~~~~~g  284 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTS-------FPGINGAPRFSPDGKKLALVLSKDG  284 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecC-------CCCCcCCeeECCCCCEEEEEEeCCC
Confidence            3445678899999999999887654 32  58888887665311 110       1123346899999998865 45566


Q ss_pred             c--EEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcC-CC--cEEEEECCCCeeeEEEecCCCcceEEEEecCCC
Q 016257          135 H--LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (392)
Q Consensus       135 ~--i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (392)
                      .  |+++|+++++.. .+..+.......+|+||++.|+..+. ++  .|+++|+.+++... +... .......+|+|||
T Consensus       285 ~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~-g~~~~~~~~SpDG  361 (448)
T PRK04792        285 QPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE-GEQNLGGSITPDG  361 (448)
T ss_pred             CeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC-CCCCcCeeECCCC
Confidence            4  777888877653 34444445677899999998876553 33  46777877666433 2211 1123457899999


Q ss_pred             CcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC-C--cEEEEecCCceeeeeeeccc
Q 016257          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD-G--DICVVDVKKMEINHWSKRLH  286 (392)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~  286 (392)
                      +.+++  .........|.++|+.+++... +... .......|+|||+.|+..+.+ +  .+.+++.. +.....+ ..+
T Consensus       362 ~~l~~--~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l-~~~  435 (448)
T PRK04792        362 RSMIM--VNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARL-PAG  435 (448)
T ss_pred             CEEEE--EEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEC-cCC
Confidence            87321  1111222367778888776432 2221 122345899999988776643 3  36777874 4444433 233


Q ss_pred             cCcceEEEEEee
Q 016257          287 LGTSIALVEFCP  298 (392)
Q Consensus       287 ~~~~i~~~~~s~  298 (392)
                       .+.+...+|+|
T Consensus       436 -~g~~~~p~Wsp  446 (448)
T PRK04792        436 -QGEVKSPAWSP  446 (448)
T ss_pred             -CCCcCCCccCC
Confidence             45677888887

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.60  E-value=5.1e-13  Score=121.38  Aligned_cols=205  Identities=17%  Similarity=0.116  Sum_probs=136.7

Q ss_pred             eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC---CcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (392)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~  162 (392)
                      .|.++|..... ...+.       .+...+...+|+|||++|+.+..+   ..|++||+.+++... .......+..+.|
T Consensus       171 ~l~~~d~~g~~-~~~l~-------~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~  241 (417)
T TIGR02800       171 ELQVADYDGAN-PQTIT-------RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAF  241 (417)
T ss_pred             eEEEEcCCCCC-CEEee-------cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEE
Confidence            57777765333 22221       134568889999999999887644   479999998876543 2334445667899


Q ss_pred             cCCCCeEEE-EcCCC--cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCC--ccEEEEEeCCCceee
Q 016257          163 SLDSEFLAT-TSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD--KALLAVYDISTWNKI  237 (392)
Q Consensus       163 ~~~~~~l~~-~~~d~--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--d~~i~v~d~~~~~~~  237 (392)
                      +||++.|+. .+.++  .|++||+.+++.. .+..+ ........|+|+++.+    ++++..  ...|+++|+.+++..
T Consensus       242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~~~~~s~dg~~l----~~~s~~~g~~~iy~~d~~~~~~~  315 (417)
T TIGR02800       242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNG-PGIDTEPSWSPDGKSI----AFTSDRGGSPQIYMMDADGGEVR  315 (417)
T ss_pred             CCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCC-CCCCCCEEECCCCCEE----EEEECCCCCceEEEEECCCCCEE
Confidence            999987764 44444  5888998876543 33322 2234567899999873    222322  236888898876543


Q ss_pred             eeecccCCCcEEEEECCCCCEEEEEeCCC---cEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCC
Q 016257          238 GHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW  310 (392)
Q Consensus       238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  310 (392)
                       .+.........+.|+|+|++++.++.++   .|.+||+.++.......    ........|+|||++|+..+.++
T Consensus       316 -~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~----~~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       316 -RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD----TGLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             -EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC----CCCCCCceECCCCCEEEEEEeCC
Confidence             3333455667889999999999888775   78999998865443321    12345568999999888877664

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=2.4e-12  Score=111.47  Aligned_cols=233  Identities=16%  Similarity=0.150  Sum_probs=158.0

Q ss_pred             eEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCC--CEEEE-----EeCCCcEEEE
Q 016257           67 MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--SRFAA-----GGVDGHLRIM  139 (392)
Q Consensus        67 ~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~-----~~~dg~i~i~  139 (392)
                      ++..|++|..+.|- -..+.+++|+..+.+......        |...+..+.+||.+  ..+|+     .+.-..++||
T Consensus       129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~kl--------~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~  199 (566)
T KOG2315|consen  129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQHKL--------SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIY  199 (566)
T ss_pred             cccccccchhhhhh-hhcceEEEEecCCccceeeee--------eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEe
Confidence            68899988754433 345669999998754322221        45678999999863  34443     2445679999


Q ss_pred             eCCCCceee--cccC-CCCcEEEEEecCCCCe-EEEEc--CC---------CcEEEEECCCCeeeEEEecCCCcceEEEE
Q 016257          140 HWPSLRIIL--DEPK-AHKSVLDMDFSLDSEF-LATTS--TD---------GSARIWKTEDGVAWTFLTRNSDEKIELCR  204 (392)
Q Consensus       140 d~~~~~~~~--~~~~-~~~~i~~i~~~~~~~~-l~~~~--~d---------~~i~vwd~~~~~~~~~~~~~~~~~v~~~~  204 (392)
                      .........  .... ....=-.+.|++-|.- |+.++  -|         .++++.+++...+...+  ...++|+++.
T Consensus       200 ~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L--~k~GPVhdv~  277 (566)
T KOG2315|consen  200 KYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL--LKEGPVHDVT  277 (566)
T ss_pred             ccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec--CCCCCceEEE
Confidence            875222111  1111 1112235778886653 33222  22         46888888743443333  3456999999


Q ss_pred             ecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeee
Q 016257          205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHW  281 (392)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~  281 (392)
                      |+|+++.   |+++.|-.-..+.+||++. +++.  ....++-+++-|+|.|++++.++-+   |.+-|||+.+.+.+..
T Consensus       278 W~~s~~E---F~VvyGfMPAkvtifnlr~-~~v~--df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~  351 (566)
T KOG2315|consen  278 WSPSGRE---FAVVYGFMPAKVTIFNLRG-KPVF--DFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK  351 (566)
T ss_pred             ECCCCCE---EEEEEecccceEEEEcCCC-CEeE--eCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccc
Confidence            9999986   3366777788999999984 4443  3345677889999999999887754   7899999999887776


Q ss_pred             eeccccCcceEEEEEeeCCCeEEEEeC------CCeEEEEEeecC
Q 016257          282 SKRLHLGTSIALVEFCPTQRVVLTASK------EWGAMITKLTVP  320 (392)
Q Consensus       282 ~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~iw~~~~~  320 (392)
                      +.    ...-+-+.|+|||+++++++.      |+.++||++...
T Consensus       352 ~~----a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  352 FK----AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             cc----cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence            53    345677899999999998875      689999999754

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.59  E-value=2.8e-13  Score=110.33  Aligned_cols=253  Identities=14%  Similarity=0.186  Sum_probs=164.6

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCC------------CCeeEEEEcC
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE------------GDPMTIAVNP   73 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~sp   73 (392)
                      -|.++.|...+   ..+++|...|.      +.++.-+.....   .......++.|.            ..|..+.|.+
T Consensus        27 iis~vef~~~G---e~LatGdkgGR------Vv~f~r~~~~~~---ey~~~t~fqshepEFDYLkSleieEKinkIrw~~   94 (433)
T KOG1354|consen   27 IISAVEFDHYG---ERLATGDKGGR------VVLFEREKLYKG---EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD   94 (433)
T ss_pred             ceeeEEeeccc---ceEeecCCCCe------EEEeeccccccc---ceeeeeeeeccCcccchhhhhhhhhhhhhceecC
Confidence            47788999888   45888887544      555554432211   111223343443            4789999998


Q ss_pred             CCC--eEEEEeCCCeEEEEEEeCCccce---------------ee--------------ccccCCCCCCCCCeEEEEecC
Q 016257           74 SGD--DFVCSTTNGGCKLFEVYGGATDI---------------NL--------------LAKKMPPLQDAGPQKCLSFSV  122 (392)
Q Consensus        74 ~~~--~l~~~~~d~~i~iw~~~~~~~~~---------------~~--------------~~~~~~~~~~~~~v~~~~~s~  122 (392)
                      +++  .++..+.|.+|++|.+.......               .+              .........|.-.|+++.++.
T Consensus        95 ~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns  174 (433)
T KOG1354|consen   95 DGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS  174 (433)
T ss_pred             CCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC
Confidence            765  56666789999999986554321               00              000011123667789999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCce---eecccCCC-----CcEEEEEecCC-CCeEEEEcCCCcEEEEECCCCee----e
Q 016257          123 DGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAH-----KSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVA----W  189 (392)
Q Consensus       123 ~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~-----~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~----~  189 (392)
                      |+..++++. |-.|.+|+++--..   +..+..+.     .-|++..|+|. .+.++.++..|+|++.|++....    .
T Consensus       175 D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hs  253 (433)
T KOG1354|consen  175 DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHS  253 (433)
T ss_pred             ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchh
Confidence            999998864 78899999863322   22233322     25889999994 46777788889999999984321    1


Q ss_pred             EEEecCC-----------CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC-CceeeeeecccC------------C
Q 016257          190 TFLTRNS-----------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLR------------K  245 (392)
Q Consensus       190 ~~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~-~~~~~~~~~~~~------------~  245 (392)
                      ..+..+.           -..|..+.|+++|++      +.+-+--+|++||+. ..+++.....|.            .
T Consensus       254 KlfEepedp~~rsffseiIsSISDvKFs~sGry------ilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD  327 (433)
T KOG1354|consen  254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRY------ILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEND  327 (433)
T ss_pred             hhhccccCCcchhhHHHHhhhhhceEEccCCcE------EEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhcc
Confidence            1111111           124778999999996      444445789999994 445554444432            1


Q ss_pred             C---cEEEEECCCCCEEEEEeCCCcEEEEecCCce
Q 016257          246 P---ASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (392)
Q Consensus       246 ~---v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  277 (392)
                      .   -..++|+-++.++++|+..+..++|+...+.
T Consensus       328 ~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  328 AIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             chhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence            1   2357899999999999999999999976554

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.59  E-value=1.2e-12  Score=118.98  Aligned_cols=199  Identities=17%  Similarity=0.165  Sum_probs=130.8

Q ss_pred             eeCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEE-eCCC
Q 016257           59 FDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDG  134 (392)
Q Consensus        59 ~~~h~~~v~~~~~sp~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg  134 (392)
                      +..+...+...+|+|||++|+.+...   ..|++||+.+++.... .       .+.+.+.+++|+|||+.|+.. +.++
T Consensus       185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~-------~~~~~~~~~~~spDg~~l~~~~~~~~  256 (417)
T TIGR02800       185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-A-------SFPGMNGAPAFSPDGSKLAVSLSKDG  256 (417)
T ss_pred             eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-e-------cCCCCccceEECCCCCEEEEEECCCC
Confidence            44566678999999999999987643   4799999887643211 1       123456678999999977654 4443


Q ss_pred             --cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcC-CC--cEEEEECCCCeeeEEEecCCCcceEEEEecCCC
Q 016257          135 --HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (392)
Q Consensus       135 --~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (392)
                        .|++|++.+++.. .+..+........|+||++.|+..+. ++  .|+++|+.+++.. .+... ......+.|+|++
T Consensus       257 ~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~-~~~~~~~~~spdg  333 (417)
T TIGR02800       257 NPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFR-GGYNASPSWSPDG  333 (417)
T ss_pred             CccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC-CCCccCeEECCCC
Confidence              5888998876543 33333344556789999998876654 33  5888888766543 33322 2356788999999


Q ss_pred             CcceEEEEEEeCCc---cEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCC---cEEEEecCC
Q 016257          210 TKPFLFCTVQRGDK---ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKK  275 (392)
Q Consensus       210 ~~~~~~~~~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~  275 (392)
                      +.     ++....+   ..|.+||+.++... .+.. ........|+|+|++|+..+.++   .+.+.+...
T Consensus       334 ~~-----i~~~~~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       334 DL-----IAFVHREGGGFNIAVMDLDGGGER-VLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             CE-----EEEEEccCCceEEEEEeCCCCCeE-EccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence            86     3333333   37999999875442 2222 22344568999999988877654   355555443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.58  E-value=2.2e-11  Score=104.48  Aligned_cols=241  Identities=11%  Similarity=0.004  Sum_probs=150.9

Q ss_pred             EcCCCCeEEEEeC----------CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-C-CCcEEE
Q 016257           71 VNPSGDDFVCSTT----------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-V-DGHLRI  138 (392)
Q Consensus        71 ~sp~~~~l~~~~~----------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-dg~i~i  138 (392)
                      ++||++.|+++..          +..|.+||..+.+...++.....+..........++++|||++|++.. . +..|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            9999998887654          678999999999877666543332222234456899999999999876 3 689999


Q ss_pred             EeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCC-Cee-eEEEec--CCCcce-EEEEecC-CCCcc
Q 016257          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVA-WTFLTR--NSDEKI-ELCRFSK-DGTKP  212 (392)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~-~~~-~~~~~~--~~~~~v-~~~~~~~-~~~~~  212 (392)
                      .|+.+++.+.++.-.. ...-...+++.. ++ -+.||......+.+ ++. ......  ....++ ..-.|.+ ++.. 
T Consensus       133 vD~~~~kvv~ei~vp~-~~~vy~t~e~~~-~~-~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~-  208 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPD-CYHIFPTANDTF-FM-HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL-  208 (352)
T ss_pred             EECCCCcEEEEEeCCC-CcEEEEecCCcc-EE-EeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE-
Confidence            9999998876654422 111122222222 21 12344443333322 111 111110  100000 1114455 7765 


Q ss_pred             eEEEEEEeCCccEEEEEeCCCc-----eeeeeecc-------cCCCcEEEEECCCCCEEEEEeC----------CCcEEE
Q 016257          213 FLFCTVQRGDKALLAVYDISTW-----NKIGHKRL-------LRKPASVLSISLDGKYLAMGSK----------DGDICV  270 (392)
Q Consensus       213 ~~~~~~~~~~d~~i~v~d~~~~-----~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~----------dg~i~i  270 (392)
                          ++.+.+ |.|.+.|+...     +....+..       ......-++++|+++.+++...          .+.|.+
T Consensus       209 ----~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V  283 (352)
T TIGR02658       209 ----VWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV  283 (352)
T ss_pred             ----EEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence                344444 99999996432     22222111       1234445999999999888531          247999


Q ss_pred             EecCCceeeeeeeccccCcceEEEEEeeCCC-eEEEEe-CCCeEEEEEeecCccc
Q 016257          271 VDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTAS-KEWGAMITKLTVPADW  323 (392)
Q Consensus       271 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~  323 (392)
                      +|..+++.+..+..   ...+..++++||++ +|++.. .++.|.+.|....+..
T Consensus       284 iD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i  335 (352)
T TIGR02658       284 VDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL  335 (352)
T ss_pred             EECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence            99999999988765   45899999999999 777666 5788999998766543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.55  E-value=6.4e-13  Score=122.82  Aligned_cols=269  Identities=12%  Similarity=0.093  Sum_probs=178.0

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCC--CCCeEEEEecCCCCEEEEEeCCCcEEEEeC
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD--AGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~  141 (392)
                      +++.+.++-.  ++|++|... .+.+||+..+.....+...+.... |  .+.+.     -.+.+++++..-+.+..-+.
T Consensus         8 ~~l~~~~~~~--~~llag~gp-~i~~yd~~s~~li~~~~~~~~~~~-H~~e~~~~-----l~~~~~v~~~~~~~v~~~~~   78 (967)
T KOG0974|consen    8 GPLNLPQLVS--DYLLAGSGP-EILVYDLSSGCLIRHLIQSKILEV-HRGEGKVK-----LLSGKIVTCAKSDEVYVKEA   78 (967)
T ss_pred             ccccchhhcc--ceeeecCCC-ceEEeeCCchhHhhhhhhhccccc-ccccccce-----eccceEEEEEeecceeecch
Confidence            3444444433  577776444 499999988876554433221111 1  00000     01234555544443333222


Q ss_pred             CCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEE---ecCCCCcceEEEEE
Q 016257          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCR---FSKDGTKPFLFCTV  218 (392)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~~~  218 (392)
                      .. +   ....-.+.|....+.-+.+.++.++.+..+.+||...+.....+.........++.   ++++.-+     ++
T Consensus        79 ~~-~---~~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~-----i~  149 (967)
T KOG0974|consen   79 SN-Q---IIERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELY-----IA  149 (967)
T ss_pred             hh-h---hhhhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEE-----EE
Confidence            11 1   11112234444556667788888888999999999887776666544433333332   2333332     68


Q ss_pred             EeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEee
Q 016257          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (392)
Q Consensus       219 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  298 (392)
                      +++--+.|.+|+....+....+.+|.+.+..+.++-||+++++.++|.++++|++.+.+......-+| ...|+.+.|.|
T Consensus       150 ~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH-saRvw~~~~~~  228 (967)
T KOG0974|consen  150 SGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH-SARVWACCFLP  228 (967)
T ss_pred             eccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc-cceeEEEEecc
Confidence            88889999999988544444688999999999999999999999999999999999998777444688 99999999999


Q ss_pred             CCCeEEEEeCCCeEEEEEeec--------CccccceeeeeeeeeeeeeceEEEEeeecceeeeecccc
Q 016257          299 TQRVVLTASKEWGAMITKLTV--------PADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPV  358 (392)
Q Consensus       299 ~~~~l~~~~~dg~i~iw~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~  358 (392)
                      +  .+++++.|-+.++|+.+.        +.....|.....+.     .....+++.|+.+++|++..
T Consensus       229 n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~-----~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  229 N--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIG-----VIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             c--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCC-----ceEEEeeccCcchhhhhhhc
Confidence            8  899999999999995542        22223444444433     34677788999999999863

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=4e-12  Score=114.43  Aligned_cols=198  Identities=16%  Similarity=0.049  Sum_probs=122.0

Q ss_pred             CCeEEEEecCCCCEE---EEEeCCC--cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcC-CC----cEEEEE
Q 016257          113 GPQKCLSFSVDGSRF---AAGGVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG----SARIWK  182 (392)
Q Consensus       113 ~~v~~~~~s~~~~~l---~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~----~i~vwd  182 (392)
                      .....-.|||||+.+   ++...+|  .|++.++.+++... +....+......|+|||+.|+..+. +|    .+..|+
T Consensus       185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~  263 (428)
T PRK01029        185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS  263 (428)
T ss_pred             CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence            455678999999752   2333343  57788888776432 2333444556899999998886553 22    344477


Q ss_pred             CCCC--eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCcc--EEEEEeCCC-ceeeeeecccCCCcEEEEECCCCC
Q 016257          183 TEDG--VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDIST-WNKIGHKRLLRKPASVLSISLDGK  257 (392)
Q Consensus       183 ~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~--~i~v~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~  257 (392)
                      +..+  .....+...........+|+|||+.+    ++++..++  .|.++++.. +.....+......+....|||||+
T Consensus       264 ~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~L----af~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~  339 (428)
T PRK01029        264 LETGAIGKPRRLLNEAFGTQGNPSFSPDGTRL----VFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGK  339 (428)
T ss_pred             cccCCCCcceEeecCCCCCcCCeEECCCCCEE----EEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCC
Confidence            6643  12233332222234678999999973    23333445  455555542 222333444445667899999999


Q ss_pred             EEEEEeCC---CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeC-C--CeEEEEEee
Q 016257          258 YLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK-E--WGAMITKLT  318 (392)
Q Consensus       258 ~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d--g~i~iw~~~  318 (392)
                      .|+..+.+   ..|.+||+.+++......  . ...+....|+|||+.|+.... +  ..|.++++.
T Consensus       340 ~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~--~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~  403 (428)
T PRK01029        340 KIAFCSVIKGVRQICVYDLATGRDYQLTT--S-PENKESPSWAIDSLHLVYSAGNSNESELYLISLI  403 (428)
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCeEEccC--C-CCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence            98876643   369999999887755432  2 345678999999998775443 3  345555554

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=6.9e-12  Score=114.17  Aligned_cols=213  Identities=15%  Similarity=0.133  Sum_probs=136.1

Q ss_pred             eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC---CcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (392)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~  162 (392)
                      .|.++|...... ..+.       .+...+....|+|||+.|+..+.+   ..|.+|++.+++... +....+.+....|
T Consensus       180 ~l~~~d~~g~~~-~~l~-------~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~  250 (430)
T PRK00178        180 TLQRSDYDGARA-VTLL-------QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAW  250 (430)
T ss_pred             EEEEECCCCCCc-eEEe-------cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEE
Confidence            366666654432 1111       244578899999999999876643   368999998876543 3333344557899


Q ss_pred             cCCCCeEEE-EcCCC--cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCC--ccEEEEEeCCCceee
Q 016257          163 SLDSEFLAT-TSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD--KALLAVYDISTWNKI  237 (392)
Q Consensus       163 ~~~~~~l~~-~~~d~--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--d~~i~v~d~~~~~~~  237 (392)
                      +|||+.|+. .+.++  .|+++|+++++.. .+..+ ........|+||++.++    +++..  ...|+++|+.+++..
T Consensus       251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~-~~~~~~~~~spDg~~i~----f~s~~~g~~~iy~~d~~~g~~~  324 (430)
T PRK00178        251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNH-PAIDTEPFWGKDGRTLY----FTSDRGGKPQIYKVNVNGGRAE  324 (430)
T ss_pred             CCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccC-CCCcCCeEECCCCCEEE----EEECCCCCceEEEEECCCCCEE
Confidence            999998874 44454  5888899877643 33332 23456789999999732    23332  346888888776643


Q ss_pred             eeecccCCCcEEEEECCCCCEEEEEeCC-C--cEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC-CeEE
Q 016257          238 GHKRLLRKPASVLSISLDGKYLAMGSKD-G--DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WGAM  313 (392)
Q Consensus       238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~  313 (392)
                      . +...........|+|+|++|+..+.+ +  .|.++|+.+++...... .   .......|+|||++++..+.+ +.-+
T Consensus       325 ~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~-~---~~~~~p~~spdg~~i~~~~~~~g~~~  399 (430)
T PRK00178        325 R-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD-T---SLDESPSVAPNGTMLIYATRQQGRGV  399 (430)
T ss_pred             E-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC-C---CCCCCceECCCCCEEEEEEecCCceE
Confidence            2 22222334467899999999887653 3  48889998887544322 1   122356899999988776654 4444


Q ss_pred             EEEee
Q 016257          314 ITKLT  318 (392)
Q Consensus       314 iw~~~  318 (392)
                      +|-+.
T Consensus       400 l~~~~  404 (430)
T PRK00178        400 LMLVS  404 (430)
T ss_pred             EEEEE
Confidence            44443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.54  E-value=8.3e-12  Score=99.74  Aligned_cols=284  Identities=12%  Similarity=0.101  Sum_probs=175.2

Q ss_pred             eEEEeCCCCCCCC------CcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC---CCC-eEEEEeCCCeEEE
Q 016257           20 NLVVLGKSSRASS------SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP---SGD-DFVCSTTNGGCKL   89 (392)
Q Consensus        20 ~~~~~g~~~~~~~------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp---~~~-~l~~~~~d~~i~i   89 (392)
                      ++++.|.....-+      --+++.+|.+.....    .+.....-. -...+..+.|.-   +|. .++-+...|.|.+
T Consensus        25 ~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~----~~l~~~q~~-dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~   99 (339)
T KOG0280|consen   25 NVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKL----SPLDTLQCT-DTSTEFDMLWRIRETDGDFNLLDAHARGQIQL   99 (339)
T ss_pred             ceEEEeeEEecCCCCchheeccceEEEeeccccc----Cccceeeee-cccccceeeeeeccCCccceeeeccccceEEE
Confidence            4677665432222      235667777653321    221111122 245677888864   455 5666778899999


Q ss_pred             EEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCce--eecccCCCCcEEEEEecC-CC
Q 016257           90 FEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSL-DS  166 (392)
Q Consensus        90 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~i~~~~-~~  166 (392)
                      +..........+..-....+. .....++.|++.+..++++..+|.+.+-+......  .+..+.|.-++....|+. +.
T Consensus       100 ~r~~~~~ss~~L~~ls~~ki~-~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p  178 (339)
T KOG0280|consen  100 YRNDEDESSVHLRGLSSKKIS-VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP  178 (339)
T ss_pred             Eeeccceeeeeecccchhhhh-heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCC
Confidence            987655433333221111111 11356788999999999999999998655443332  234556666888888876 45


Q ss_pred             CeEEEEcCCCcEEEEECCC-CeeeEE-EecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC-ceeeeeeccc
Q 016257          167 EFLATTSTDGSARIWKTED-GVAWTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKRLL  243 (392)
Q Consensus       167 ~~l~~~~~d~~i~vwd~~~-~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~-~~~~~~~~~~  243 (392)
                      +.+++|+.|+.+..||+|. ++.+.. ...|+ ..|.++.-+|....    ++++|+.|..|++||.|+ ++++.. ...
T Consensus       179 nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~-~GV~SI~ss~~~~~----~I~TGsYDe~i~~~DtRnm~kPl~~-~~v  252 (339)
T KOG0280|consen  179 NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHT-SGVVSIYSSPPKPT----YIATGSYDECIRVLDTRNMGKPLFK-AKV  252 (339)
T ss_pred             ceEEecCCCceEEEEEecCCcceeeecceeee-cceEEEecCCCCCc----eEEEeccccceeeeehhcccCcccc-Ccc
Confidence            7889999999999999993 333333 22333 35888888876443    289999999999999995 444433 334


Q ss_pred             CCCcEEEEECCCC--CEEEEEeCCCcEEEEecCCcee----eeeeeccccCcceEEEEEeeCCCeEEEEe-CCCeEE-EE
Q 016257          244 RKPASVLSISLDG--KYLAMGSKDGDICVVDVKKMEI----NHWSKRLHLGTSIALVEFCPTQRVVLTAS-KEWGAM-IT  315 (392)
Q Consensus       244 ~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~-iw  315 (392)
                      .+.|..+.++|.-  +.|+++-.+| .+|-+.+.+..    .......| .+-...-.|......|++++ .|+.++ +|
T Consensus       253 ~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~h-dSl~YG~DWd~~~~~lATCsFYDk~~~~~W  330 (339)
T KOG0280|consen  253 GGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIH-DSLCYGGDWDSKDSFLATCSFYDKKIRQLW  330 (339)
T ss_pred             ccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccc-cceeeccccccccceeeeeeccccceeeee
Confidence            5889999999953  4455555555 67777665432    22233456 66666667744445677755 455544 55


Q ss_pred             Ee
Q 016257          316 KL  317 (392)
Q Consensus       316 ~~  317 (392)
                      -.
T Consensus       331 l~  332 (339)
T KOG0280|consen  331 LH  332 (339)
T ss_pred             ee
Confidence            43

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.53  E-value=8.6e-13  Score=107.50  Aligned_cols=251  Identities=13%  Similarity=0.077  Sum_probs=167.7

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCcc-ceeeccc---------cCCCCCCCCCeEEEEecCCCC--EEEEE
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT-DINLLAK---------KMPPLQDAGPQKCLSFSVDGS--RFAAG  130 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~-~~~~~~~---------~~~~~~~~~~v~~~~~s~~~~--~l~~~  130 (392)
                      .+-|.++.|...|.+||+|..+|+|.++.-..... ...+...         .+..+.-...|..+.|.++++  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            45788999999999999999999999997654332 1111111         011223346789999998654  56667


Q ss_pred             eCCCcEEEEeCCCCcee-----------------------------------ecccC-CCCcEEEEEecCCCCeEEEEcC
Q 016257          131 GVDGHLRIMHWPSLRII-----------------------------------LDEPK-AHKSVLDMDFSLDSEFLATTST  174 (392)
Q Consensus       131 ~~dg~i~i~d~~~~~~~-----------------------------------~~~~~-~~~~i~~i~~~~~~~~l~~~~~  174 (392)
                      +.|.+|++|-+......                                   +.... |.-.|.++.++.|+..++++. 
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence            78999999987432110                                   00111 222688999999999888775 


Q ss_pred             CCcEEEEECCCCeeeEEE---ecCC----CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceee----eee---
Q 016257          175 DGSARIWKTEDGVAWTFL---TRNS----DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI----GHK---  240 (392)
Q Consensus       175 d~~i~vwd~~~~~~~~~~---~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~----~~~---  240 (392)
                      |=.|.+|+++-...-..+   ..+.    ...|++..|+|..-..    ++-++..|+|++-|++....-    +.+   
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~----f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep  259 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNV----FVYSSSKGTIRLCDMRQSALCDAHSKLFEEP  259 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccE----EEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence            678999998743322222   1111    2357889999987653    566778899999999943210    001   


Q ss_pred             ---------cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCC-ceeeeeeecccc-----------Cc---ceEEEEE
Q 016257          241 ---------RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK-MEINHWSKRLHL-----------GT---SIALVEF  296 (392)
Q Consensus       241 ---------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~-----------~~---~i~~~~~  296 (392)
                               ...-..|..+.|+++|+|+++-.. -+|++||+.. .+++..+ +.|.           ..   .-..++|
T Consensus       260 edp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~-~vh~~lr~kLc~lYEnD~IfdKFec~~  337 (433)
T KOG1354|consen  260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETY-PVHEYLRSKLCSLYENDAIFDKFECSW  337 (433)
T ss_pred             cCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEE-eehHhHHHHHHHHhhccchhheeEEEE
Confidence                     111246889999999999998754 5799999953 3333332 2331           11   2345789


Q ss_pred             eeCCCeEEEEeCCCeEEEEEeecC
Q 016257          297 CPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       297 s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      +-++.++++|+..+.++++++..+
T Consensus       338 sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  338 SGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             cCCcceEecccccceEEEecCCCC
Confidence            999999999999999999996544

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.53  E-value=2e-10  Score=94.92  Aligned_cols=278  Identities=11%  Similarity=0.148  Sum_probs=173.8

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC-
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-   83 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~-   83 (392)
                      +..+=++|+|+...+-.+.   .   .+..+.+..|.+|++...+.  .+-...+.+  .+.+.++++++|++|+++.. 
T Consensus        40 ~nptyl~~~~~~~~LY~v~---~---~~~~ggvaay~iD~~~G~Lt--~ln~~~~~g--~~p~yvsvd~~g~~vf~AnY~  109 (346)
T COG2706          40 GNPTYLAVNPDQRHLYVVN---E---PGEEGGVAAYRIDPDDGRLT--FLNRQTLPG--SPPCYVSVDEDGRFVFVANYH  109 (346)
T ss_pred             CCCceEEECCCCCEEEEEE---e---cCCcCcEEEEEEcCCCCeEE--EeeccccCC--CCCeEEEECCCCCEEEEEEcc
Confidence            3445588999875532222   2   22366789999997644442  122222332  34488999999999998875 


Q ss_pred             CCeEEEEEEeCCccceeecccc--CC----CCCCCCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCCceeecc---cCC
Q 016257           84 NGGCKLFEVYGGATDINLLAKK--MP----PLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDE---PKA  153 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~--~~----~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~---~~~  153 (392)
                      .|.|.++.+.....+.......  ..    .-+....+....+.|++++|++..- -..|.+|++..++.....   ...
T Consensus       110 ~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~  189 (346)
T COG2706         110 SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP  189 (346)
T ss_pred             CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCC
Confidence            4789999986643322221100  00    0111223889999999999988753 346999999877653221   122


Q ss_pred             CCcEEEEEecCCCCeEEEEc-CCCcEEEEECCCC-eeeEEEec--------CCCcceEEEEecCCCCcceEEEEEEeCCc
Q 016257          154 HKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDG-VAWTFLTR--------NSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (392)
Q Consensus       154 ~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~-~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (392)
                      ...-..|.|+|++++..... -+++|.+|..... .....++.        ........+..++||+++|    ++.-..
T Consensus       190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY----asNRg~  265 (346)
T COG2706         190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY----ASNRGH  265 (346)
T ss_pred             CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEE----EecCCC
Confidence            33678999999999877655 5889999998763 22222221        1123567899999999732    333345


Q ss_pred             cEEEEEeCCCc--ee--eeeecccCCCcEEEEECCCCCEEEEEeCC-CcEEEEecC--CceeeeeeeccccCcceEEEEE
Q 016257          224 ALLAVYDISTW--NK--IGHKRLLRKPASVLSISLDGKYLAMGSKD-GDICVVDVK--KMEINHWSKRLHLGTSIALVEF  296 (392)
Q Consensus       224 ~~i~v~d~~~~--~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~--~~~~~~~~~~~~~~~~i~~~~~  296 (392)
                      ..|.+|.+...  +.  +.....+...-+...++|.|++|+++.++ ..|.+|...  +|++........ .....|+.|
T Consensus       266 dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~-~p~Pvcv~f  344 (346)
T COG2706         266 DSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAV-VPEPVCVKF  344 (346)
T ss_pred             CeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccC-CCCcEEEEE
Confidence            57888876532  22  22233344457889999999999999865 458888654  566554433333 455666766


Q ss_pred             e
Q 016257          297 C  297 (392)
Q Consensus       297 s  297 (392)
                      .
T Consensus       345 ~  345 (346)
T COG2706         345 L  345 (346)
T ss_pred             c
Confidence            4

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.52  E-value=1.6e-12  Score=105.93  Aligned_cols=254  Identities=12%  Similarity=0.166  Sum_probs=187.2

Q ss_pred             CCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe
Q 016257           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (392)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  131 (392)
                      .+.+...++||.+.+++...-|..+-+++.+.|.+++||--.+...-..-..     .....+++++.+.++...|++|-
T Consensus        13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-----~~mP~~~~~~~y~~e~~~L~vg~   87 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-----HYMPSPCSAMEYVSESRRLYVGQ   87 (404)
T ss_pred             chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh-----hhCCCCceEeeeeccceEEEEEE
Confidence            4555667899999999999999888999999999999997544332111111     11246889999999999999999


Q ss_pred             CCCcEEEEeCC----CCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecC
Q 016257          132 VDGHLRIMHWP----SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK  207 (392)
Q Consensus       132 ~dg~i~i~d~~----~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  207 (392)
                      ..|++.-+.+.    ....++....|...+..+.|+...+++++.+.|..+.---.+.+..+.......  ...++.+. 
T Consensus        88 ~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~--~~t~~~~d-  164 (404)
T KOG1409|consen   88 DNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET--PASALQFD-  164 (404)
T ss_pred             ecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec--cCCCCcee-
Confidence            99999988763    334455566778899999999989999999998876543344443332221100  01111111 


Q ss_pred             CCCcceEEEEEEeCCccEEEEEeCC--CceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecc
Q 016257          208 DGTKPFLFCTVQRGDKALLAVYDIS--TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL  285 (392)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~v~d~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  285 (392)
                           +. +...+...+.|.+-.+.  ...++..+.+|...+++++|.|....|++|..|..+.+||+...+-......+
T Consensus       165 -----~~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g  238 (404)
T KOG1409|consen  165 -----AL-YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG  238 (404)
T ss_pred             -----eE-EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc
Confidence                 11 24555556666555443  44567788999999999999999999999999999999999887766666678


Q ss_pred             ccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257          286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       286 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      | ...|..+...+--+.+.+++.||.|.+|+++..
T Consensus       239 h-~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  239 H-NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             c-hhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            8 888988888888889999999999999999743

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=5.5e-12  Score=114.45  Aligned_cols=193  Identities=15%  Similarity=0.089  Sum_probs=123.0

Q ss_pred             CCCCeEEEEecCCCCEEEEEeCC---CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEE-EcCCCc--EEEEECC
Q 016257          111 DAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLAT-TSTDGS--ARIWKTE  184 (392)
Q Consensus       111 ~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~d~~--i~vwd~~  184 (392)
                      +...+....|+|||+.|+..+.+   ..|+++|+.+++... +....+......|+|||+.|+. .+.++.  |+++|+.
T Consensus       216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~  294 (448)
T PRK04792        216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA  294 (448)
T ss_pred             CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence            34578889999999998876543   258889998876532 2222233457899999998765 455664  7888887


Q ss_pred             CCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeC--CccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEE
Q 016257          185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG--DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG  262 (392)
Q Consensus       185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  262 (392)
                      +++.. .+..+ .......+|+||++.++    +++.  ....|+++|+.+++... +..........+|+|||++|+..
T Consensus       295 tg~~~-~lt~~-~~~~~~p~wSpDG~~I~----f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~  367 (448)
T PRK04792        295 TKALT-RITRH-RAIDTEPSWHPDGKSLI----FTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMV  367 (448)
T ss_pred             CCCeE-ECccC-CCCccceEECCCCCEEE----EEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEE
Confidence            76543 33332 22457789999999732    2333  23567788887766432 22222334457899999998876


Q ss_pred             eCC-C--cEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC-CeEEEE
Q 016257          263 SKD-G--DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WGAMIT  315 (392)
Q Consensus       263 ~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iw  315 (392)
                      +.+ +  .|.++|+.+++..... ..   .......|+|||+.|+..+.+ +.-.+|
T Consensus       368 ~~~~g~~~I~~~dl~~g~~~~lt-~~---~~d~~ps~spdG~~I~~~~~~~g~~~l~  420 (448)
T PRK04792        368 NRTNGKFNIARQDLETGAMQVLT-ST---RLDESPSVAPNGTMVIYSTTYQGKQVLA  420 (448)
T ss_pred             EecCCceEEEEEECCCCCeEEcc-CC---CCCCCceECCCCCEEEEEEecCCceEEE
Confidence            653 3  4566788887654332 11   122345899999987766543 433333

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.52  E-value=6.1e-12  Score=109.71  Aligned_cols=190  Identities=19%  Similarity=0.152  Sum_probs=154.9

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCceeecccCC---CCcEEEEEec--------------------CCCCeEEEEcCCCcE
Q 016257          122 VDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA---HKSVLDMDFS--------------------LDSEFLATTSTDGSA  178 (392)
Q Consensus       122 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~i~~i~~~--------------------~~~~~l~~~~~d~~i  178 (392)
                      |-..++|....||.+++|+...++....+...   .+...+..|.                    .+...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            44668999999999999999988776555332   1234444442                    123457778889999


Q ss_pred             EEEECCCCeeeEEEe-cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCC
Q 016257          179 RIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK  257 (392)
Q Consensus       179 ~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~  257 (392)
                      .+|++..++....+. ..+.+.|.++.++.+-..     +.+++.|..+..|+....+.+.........+.+++++|||+
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~c-----iyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGC-----IYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCc-----eEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence            999999999888887 567778999988887665     89999999999999999999988888888999999999999


Q ss_pred             EEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeC-----CCeEEE-EeCCCeEEEEEeecC
Q 016257          258 YLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT-----QRVVLT-ASKEWGAMITKLTVP  320 (392)
Q Consensus       258 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~~-~~~dg~i~iw~~~~~  320 (392)
                      .+++++  +.|++||+++++.+..+ .+| .++|++++|..+     |.++++ ...+..+.+|.+...
T Consensus       158 ~l~~as--~~ik~~~~~~kevv~~f-tgh-~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  158 ILLTAS--RQIKVLDIETKEVVITF-TGH-GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             EEEecc--ceEEEEEccCceEEEEe-cCC-CcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence            999987  47999999999999888 689 999999999987     665554 456778889988753

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.52  E-value=2.9e-12  Score=118.57  Aligned_cols=198  Identities=13%  Similarity=0.050  Sum_probs=157.7

Q ss_pred             CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCc----EEEEEecCCCCeEEEEcCCCcEEEEECCCCeee
Q 016257          114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS----VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW  189 (392)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~  189 (392)
                      .+....+..+...++.++.+..+.+||...+....+.......    ..-+.++++.-++++|+.-+.|.+|+....+..
T Consensus        89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p  168 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP  168 (967)
T ss_pred             cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc
Confidence            4444566667778999999999999999887776655544331    122334666778999999999999998743333


Q ss_pred             EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeee-eecccCCCcEEEEECCCCCEEEEEeCCCcE
Q 016257          190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG-HKRLLRKPASVLSISLDGKYLAMGSKDGDI  268 (392)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  268 (392)
                      ..+. .|++.+.++.++.||.+     +++.++|.++++|++++.+... ..-+|...+..+.|.|+  .+++++.|.+.
T Consensus       169 ~~l~-GHeG~iF~i~~s~dg~~-----i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctc  240 (967)
T KOG0974|consen  169 IRLK-GHEGSIFSIVTSLDGRY-----IASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTC  240 (967)
T ss_pred             ceec-ccCCceEEEEEccCCcE-----EEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEE
Confidence            3344 45668999999999998     8999999999999999988765 56678999999999998  99999999999


Q ss_pred             EEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCc
Q 016257          269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (392)
Q Consensus       269 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  321 (392)
                      ++|+....+.. .+ ..|....|+.++..++...+++++.|+.+++|++....
T Consensus       241 rvW~~~~~~l~-~y-~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  241 RVWGVNGTQLE-VY-DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             EEEecccceeh-hh-hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence            99976554444 33 56768899999999999999999999999999997543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.47  E-value=1.6e-10  Score=98.48  Aligned_cols=241  Identities=13%  Similarity=0.186  Sum_probs=160.3

Q ss_pred             CCCCCeeEEEEcCCCCeEEEEeCCC-eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 016257           61 ESEGDPMTIAVNPSGDDFVCSTTNG-GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (392)
Q Consensus        61 ~h~~~v~~~~~sp~~~~l~~~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~  139 (392)
                      +|.+.|.-..+.-+++-++.|..|| .+-|+|..+++.... .       ..-+.|.++..+++|++++++.....+.+.
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e-------~~lg~I~av~vs~dGK~~vvaNdr~el~vi  428 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-E-------KDLGNIEAVKVSPDGKKVVVANDRFELWVI  428 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-e-------CCccceEEEEEcCCCcEEEEEcCceEEEEE
Confidence            5677899999988888999999998 899999988763221 1       134689999999999999999988999999


Q ss_pred             eCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCC----cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG----SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (392)
Q Consensus       140 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (392)
                      |+++++....-....+-|+.++|||+++++|-+--+|    .|+++|+..++....-...  ..-.+.+|.|+++++|+ 
T Consensus       429 didngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t--a~DfsPaFD~d~ryLYf-  505 (668)
T COG4946         429 DIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT--AYDFSPAFDPDGRYLYF-  505 (668)
T ss_pred             EecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCc--ccccCcccCCCCcEEEE-
Confidence            9999988765555566899999999999999876654    6999999887765544322  23467889999997554 


Q ss_pred             EEEEeC----CccEEEEEeCCCc-ee-eeee----------------------------------cccCCCcEEEEECCC
Q 016257          216 CTVQRG----DKALLAVYDISTW-NK-IGHK----------------------------------RLLRKPASVLSISLD  255 (392)
Q Consensus       216 ~~~~~~----~d~~i~v~d~~~~-~~-~~~~----------------------------------~~~~~~v~~~~~s~~  255 (392)
                       +..-+    .|..+.-+....- ++ +..+                                  ....+.-.+++=-.+
T Consensus       506 -Ls~RsLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~lk~  584 (668)
T COG4946         506 -LSARSLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGLKN  584 (668)
T ss_pred             -EeccccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCccceeEeeecCC
Confidence             33222    2333222221100 00 0000                                  000011111111122


Q ss_pred             CCEEEE--------------EeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257          256 GKYLAM--------------GSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       256 ~~~l~~--------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      |+.+..              +-..|.+.+||+++.+....      ...++++..|+|++.++. -.||.+++++++..
T Consensus       585 ~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~------k~nvss~rlS~D~s~ilv-k~d~kl~~f~vekk  656 (668)
T COG4946         585 GKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEY------KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEKK  656 (668)
T ss_pred             CeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHH------hcccceEEEcCCCCEEEE-EeCCeEEEEecccC
Confidence            222211              12235566666655443221      457899999999998888 78999999999863

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.47  E-value=1.3e-10  Score=99.77  Aligned_cols=283  Identities=14%  Similarity=0.084  Sum_probs=183.0

Q ss_pred             CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe
Q 016257            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (392)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~   82 (392)
                      .+-|+..++|+|.+..   +++-.       ...|.+|.-....        ....+.  ...|..+.|+|++++|.+=+
T Consensus        31 ~~~p~~~~~~SP~G~~---l~~~~-------~~~V~~~~g~~~~--------~l~~~~--~~~V~~~~fSP~~kYL~tw~   90 (561)
T COG5354          31 ENWPVAYVSESPLGTY---LFSEH-------AAGVECWGGPSKA--------KLVRFR--HPDVKYLDFSPNEKYLVTWS   90 (561)
T ss_pred             cCcchhheeecCcchh---eehhh-------ccceEEccccchh--------heeeee--cCCceecccCcccceeeeec
Confidence            3568899999999854   44222       2235666543111        111222  35699999999999999865


Q ss_pred             CCC---------------eEEEEEEeCCccceeeccccCCCCCCCCCeE-EEEecCCCCEEEEEeCCCcEEEEeCCCCce
Q 016257           83 TNG---------------GCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGGVDGHLRIMHWPSLRI  146 (392)
Q Consensus        83 ~d~---------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~  146 (392)
                      ..+               .+.+||..++.....+.....+     .... -+.|+-+.+++|-. ....+.|+++ +...
T Consensus        91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~-----~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~  163 (561)
T COG5354          91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP-----YLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNI  163 (561)
T ss_pred             cCCccChhhccCCccccCceeEEeccCceeEeeccccCCc-----ccccceeeeeecchhhhhh-ccCeEEEEec-CCcc
Confidence            433               4899999998876655443211     1123 67888888877655 3456999997 3332


Q ss_pred             e-ecccCC-CCcEEEEEecCCC--CeEEE-----EcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEE
Q 016257          147 I-LDEPKA-HKSVLDMDFSLDS--EFLAT-----TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (392)
Q Consensus       147 ~-~~~~~~-~~~i~~i~~~~~~--~~l~~-----~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (392)
                      . ..+... ...|....|+|.+  ..|+.     .+.++.+++|.+..++.+.+-..-. ..-..+.|.+.|.++.+. +
T Consensus       164 ~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk-~~~~qLkW~~~g~~ll~l-~  241 (561)
T COG5354         164 EEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK-VSGVQLKWQVLGKYLLVL-V  241 (561)
T ss_pred             ccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe-ecccEEEEecCCceEEEE-E
Confidence            2 111111 2468899999953  34553     4567889999998766554432211 123468899999864332 1


Q ss_pred             EEeC-------CccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEe--CCCcEEEEecCCceeeeeeeccccC
Q 016257          218 VQRG-------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS--KDGDICVVDVKKMEINHWSKRLHLG  288 (392)
Q Consensus       218 ~~~~-------~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~  288 (392)
                      .+..       ....++++++........ ....++|...+|.|.++.+++.+  .+-.+.++|++.. +...+.    +
T Consensus       242 ~t~~ksnKsyfgesnLyl~~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P----e  315 (561)
T COG5354         242 MTHTKSNKSYFGESNLYLLRITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP----E  315 (561)
T ss_pred             EEeeecccceeccceEEEEeeccccccee-ccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC----C
Confidence            2211       125688888885444333 25578999999999987766544  7788999999887 333332    4


Q ss_pred             cceEEEEEeeCCCeEEEEeCC---CeEEEEEeecC
Q 016257          289 TSIALVEFCPTQRVVLTASKE---WGAMITKLTVP  320 (392)
Q Consensus       289 ~~i~~~~~s~~~~~l~~~~~d---g~i~iw~~~~~  320 (392)
                      ..=..+.|+|.+++++.++-|   |.+.+|+....
T Consensus       316 ~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r  350 (561)
T COG5354         316 QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR  350 (561)
T ss_pred             cccccccccCcccEEEEecCCccccceEEeccCCc
Confidence            556778899999999998876   78889887643

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.47  E-value=2.4e-11  Score=106.14  Aligned_cols=191  Identities=17%  Similarity=0.150  Sum_probs=148.9

Q ss_pred             CCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEec--------------------CCCCEEEEEeC
Q 016257           73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS--------------------VDGSRFAAGGV  132 (392)
Q Consensus        73 p~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--------------------~~~~~l~~~~~  132 (392)
                      |-..++|....||.+++|+...++....+...    ..-.+...+..|.                    .|...++-|..
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~----~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~   78 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPI----ASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP   78 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccc----hhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence            45678999999999999999888754444321    1223444444442                    12346777888


Q ss_pred             CCcEEEEeCCCCceeeccc--CCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCC
Q 016257          133 DGHLRIMHWPSLRIILDEP--KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (392)
Q Consensus       133 dg~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (392)
                      .|.|.+|+...++....+.  .|.+.|.++.++.+-..|.+++.|..+..|+....+.++.+..... .+.+++.+||+.
T Consensus        79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-~~~sl~is~D~~  157 (541)
T KOG4547|consen   79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-LVSSLCISPDGK  157 (541)
T ss_pred             CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC-ccceEEEcCCCC
Confidence            9999999999998876665  4556899999999999999999999999999999988888877655 689999999988


Q ss_pred             cceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCC-----CCEEEEEe-CCCcEEEEecCC
Q 016257          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD-----GKYLAMGS-KDGDICVVDVKK  275 (392)
Q Consensus       211 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~-~dg~i~iwd~~~  275 (392)
                      .     +++++  ++|++||+++++.+..+.+|.++|++++|--+     |.++.++. .+.-+.+|-...
T Consensus       158 ~-----l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  158 I-----LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             E-----EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            5     45444  57999999999999999999999999999876     66766543 455577776544

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.45  E-value=1.2e-10  Score=99.29  Aligned_cols=226  Identities=20%  Similarity=0.171  Sum_probs=160.6

Q ss_pred             EEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCC----CCCCCCCeEEEE-ecC-CCCEEEEEeCCCcEEEEeC
Q 016257           68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP----PLQDAGPQKCLS-FSV-DGSRFAAGGVDGHLRIMHW  141 (392)
Q Consensus        68 ~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~-~s~-~~~~l~~~~~dg~i~i~d~  141 (392)
                      +-..+.||+.++. +..|.|.+||..+......-..-...    ......+..-+. |++ +|++++..+ .|...+.+.
T Consensus       271 ~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~  348 (668)
T COG4946         271 PRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRP  348 (668)
T ss_pred             ccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECC
Confidence            3334568888877 45677999998876543221110110    000111222232 555 788988887 577888776


Q ss_pred             CCCceeecccCCCCcEEEEEecCCCCeEEEEcCCC-cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEe
Q 016257          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG-SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (392)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (392)
                      ..+-.++  .++.+.|.-..+..+++-++.|..|| .+-++|.++++..+. .... +.|.++..+++|+.     ++.+
T Consensus       349 ~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~l-g~I~av~vs~dGK~-----~vva  419 (668)
T COG4946         349 WDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDL-GNIEAVKVSPDGKK-----VVVA  419 (668)
T ss_pred             CCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-eCCc-cceEEEEEcCCCcE-----EEEE
Confidence            5554432  34555688888888888899999998 899999988765443 3333 36999999999997     7888


Q ss_pred             CCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCC----cEEEEecCCceeeeeeeccccCcceEEEEE
Q 016257          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG----DICVVDVKKMEINHWSKRLHLGTSIALVEF  296 (392)
Q Consensus       221 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  296 (392)
                      .....|-+.|+.+++....-+...+-|+.++|||+++++|-+--+|    .|+++|+.+++.......   .+.=.+.+|
T Consensus       420 Ndr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~---ta~DfsPaF  496 (668)
T COG4946         420 NDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP---TAYDFSPAF  496 (668)
T ss_pred             cCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC---cccccCccc
Confidence            8889999999999988766666677899999999999999887665    599999999987665422   344567789


Q ss_pred             eeCCCeEEEEe
Q 016257          297 CPTQRVVLTAS  307 (392)
Q Consensus       297 s~~~~~l~~~~  307 (392)
                      .||+++|.--+
T Consensus       497 D~d~ryLYfLs  507 (668)
T COG4946         497 DPDGRYLYFLS  507 (668)
T ss_pred             CCCCcEEEEEe
Confidence            99999776544

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=2.2e-10  Score=99.50  Aligned_cols=283  Identities=13%  Similarity=0.120  Sum_probs=177.4

Q ss_pred             CeeEEEEcCCCCeEEEEeC-----------CCeEEEEEEeCCccceeeccccCCCCCCCCC-eEEEEecCCCCEEEEEeC
Q 016257           65 DPMTIAVNPSGDDFVCSTT-----------NGGCKLFEVYGGATDINLLAKKMPPLQDAGP-QKCLSFSVDGSRFAAGGV  132 (392)
Q Consensus        65 ~v~~~~~sp~~~~l~~~~~-----------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~  132 (392)
                      .|.-+.|||+.+||+|-+.           ...+.|||+.++.....+....     .... -.-+.||.|++++|.-..
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~-----~~~~~WP~frWS~DdKy~Arm~~  325 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIK-----SPYLKWPIFRWSHDDKYFARMTG  325 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccC-----CCccccceEEeccCCceeEEecc
Confidence            4888999999999998652           2469999999998766554421     1122 234689999999998776


Q ss_pred             CCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeeeEEEecCCCcceEEEEecC
Q 016257          133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSK  207 (392)
Q Consensus       133 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  207 (392)
                       ..|.||+..+...+-...-....|....|+|.++.||.=+..     ..+.+-.+.+++.+++....+- .-..+.|-.
T Consensus       326 -~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV-sDckLhWQk  403 (698)
T KOG2314|consen  326 -NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV-SDCKLHWQK  403 (698)
T ss_pred             -ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceee-eccEEEecc
Confidence             469999876644332222233578999999998888754321     3466666666666555433221 112345555


Q ss_pred             CCCcceEEEEE-------EeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeC---CCcEEEEecC-Cc
Q 016257          208 DGTKPFLFCTV-------QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK---DGDICVVDVK-KM  276 (392)
Q Consensus       208 ~~~~~~~~~~~-------~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~-~~  276 (392)
                      +|.+  +++-+       +.+.-..+.|+.++........-.....+-..+|-|.|..+++-+.   ..++.+|.+. +.
T Consensus       404 ~gdy--LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~  481 (698)
T KOG2314|consen  404 SGDY--LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI  481 (698)
T ss_pred             CCcE--EEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC
Confidence            5654  21111       1233345667777765543333344668889999999988776553   3579999887 33


Q ss_pred             eeeeeeeccccCcceEEEEEeeCCCeEEEEe---CCCeEEEEEeecCc--------cccceeeeeeeeeeeeeceEE-EE
Q 016257          277 EINHWSKRLHLGTSIALVEFCPTQRVVLTAS---KEWGAMITKLTVPA--------DWKEWQIYSLLLALFLASAVV-FY  344 (392)
Q Consensus       277 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~iw~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~  344 (392)
                      .....+.... ....+.+.|+|.|++++.+.   ..|.+.++|+....        -+....+...+.+.+....+. .-
T Consensus       482 ~~~~lVk~~d-k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wr  560 (698)
T KOG2314|consen  482 KKPSLVKELD-KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWR  560 (698)
T ss_pred             Cchhhhhhhc-ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhh
Confidence            3333333333 55678899999999887764   46889999987421        111223445555554433221 12


Q ss_pred             eeecceeeeeccc
Q 016257          345 IFFENSDSFWNFP  357 (392)
Q Consensus       345 ~~~d~~i~~W~~~  357 (392)
                      ...|+..++|+++
T Consensus       561 hk~d~GYri~tfq  573 (698)
T KOG2314|consen  561 HKVDNGYRIFTFQ  573 (698)
T ss_pred             hccccceEEEEee
Confidence            2347778999886

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=4e-10  Score=98.03  Aligned_cols=315  Identities=14%  Similarity=0.135  Sum_probs=190.8

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEE----
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS----   81 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~----   81 (392)
                      +.+..++++++   .++++...       ..+.|+......        ...+..  ...++++.|+|-|.+|.+=    
T Consensus        36 ~~~v~~~S~~G---~lfA~~~~-------~~v~i~~~~~~~--------~~lt~~--~~~~~~L~fSP~g~yL~T~e~~~   95 (566)
T KOG2315|consen   36 PCNVFAYSNNG---RLFAYSDN-------QVVKVFEIATLK--------VVLCVE--LKKTYDLLFSPKGNYLLTWEPWA   95 (566)
T ss_pred             cceeEEEcCCC---cEEEEEcC-------CeEEEEEccCCc--------EEEEec--cceeeeeeecccccccccccccc
Confidence            45566677776   45554333       334555543111        112222  2379999999999988762    


Q ss_pred             -eC-----CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCC
Q 016257           82 -TT-----NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK  155 (392)
Q Consensus        82 -~~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  155 (392)
                       ..     .-.+++|++++......+....      ... ++..|+.|..+.+- -..+.+.+|++.+.+.+. ..-+..
T Consensus        96 i~~~~~~~~pn~~v~~vet~~~~s~~q~k~------Q~~-W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~-~kl~~~  166 (566)
T KOG2315|consen   96 IYGPKNASNPNVLVYNVETGVQRSQIQKKM------QNG-WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQ-HKLSVS  166 (566)
T ss_pred             cccCCCCCCCceeeeeeccceehhheehhh------hcC-cccccccchhhhhh-hhcceEEEEecCCcccee-eeeecc
Confidence             11     2347899999844322222211      112 68899998765433 235779999987744332 223455


Q ss_pred             cEEEEEecCCCC--eEEE-----EcCCCcEEEEECCCCeeeEEEec--CCCcceEEEEecCCCCcceEEEEEEeCCc---
Q 016257          156 SVLDMDFSLDSE--FLAT-----TSTDGSARIWKTEDGVAWTFLTR--NSDEKIELCRFSKDGTKPFLFCTVQRGDK---  223 (392)
Q Consensus       156 ~i~~i~~~~~~~--~l~~-----~~~d~~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~d---  223 (392)
                      .|+.+.++|.+.  .+++     .+.-+.+++|..........+..  -....--.+.|++-|..+++  +++..-|   
T Consensus       167 ~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLv--LastdVDktn  244 (566)
T KOG2315|consen  167 GITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLV--LASTDVDKTN  244 (566)
T ss_pred             ceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEE--EEEEeecCCC
Confidence            799999998633  3443     34456799998763222111110  01112245788888886433  4444433   


Q ss_pred             ------cEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEE--EeCCCcEEEEecCCceeeeeeeccccCcceEEEE
Q 016257          224 ------ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM--GSKDGDICVVDVKKMEINHWSKRLHLGTSIALVE  295 (392)
Q Consensus       224 ------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  295 (392)
                            ..++++++........ -...++|.++.|+|+++-+++  |-.-.++.|||++..- +..+.    +++=+++-
T Consensus       245 ~SYYGEq~Lyll~t~g~s~~V~-L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~-v~df~----egpRN~~~  318 (566)
T KOG2315|consen  245 ASYYGEQTLYLLATQGESVSVP-LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP-VFDFP----EGPRNTAF  318 (566)
T ss_pred             ccccccceEEEEEecCceEEEe-cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE-eEeCC----CCCccceE
Confidence                  3678888873333322 234789999999999977665  4456789999987544 33332    67788999


Q ss_pred             EeeCCCeEEEEeCC---CeEEEEEeecCccccce------eeeeeeeeeeeeceEEE-Eeeecceeeeeccc
Q 016257          296 FCPTQRVVLTASKE---WGAMITKLTVPADWKEW------QIYSLLLALFLASAVVF-YIFFENSDSFWNFP  357 (392)
Q Consensus       296 ~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~d~~i~~W~~~  357 (392)
                      |+|.|++|+.+|-+   |.+.+||+...+.....      -..+.+++.++..+..+ -.=.|+.++||++.
T Consensus       319 fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  319 FNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             ECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            99999999988865   89999999875544322      12345555544433332 11248999999985

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.42  E-value=6.6e-10  Score=89.09  Aligned_cols=226  Identities=16%  Similarity=0.124  Sum_probs=152.4

Q ss_pred             CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC---CCC-EEEEEeCCCcEEEEeCCCCceeecccCCCC---
Q 016257           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV---DGS-RFAAGGVDGHLRIMHWPSLRIILDEPKAHK---  155 (392)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---  155 (392)
                      ..|.+.+|++...+.........    ...+.+..+.|..   +|. .++-+..+|.|.++..........+.+-..   
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~----~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki  119 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQC----TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI  119 (339)
T ss_pred             eccceEEEeecccccCccceeee----ecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh
Confidence            45678899988776433111111    1345677788864   555 556677789999997654433322222211   


Q ss_pred             ---cEEEEEecCCCCeEEEEcCCCcEEEEECCCCeee--EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEe
Q 016257          156 ---SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW--TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (392)
Q Consensus       156 ---~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d  230 (392)
                         ...++.|++.+..++++..+|.+.+-+.......  +.++.| +.......|+.....+    +.+|++|+.+..||
T Consensus       120 ~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~H-e~E~Wta~f~~~~pnl----vytGgDD~~l~~~D  194 (339)
T KOG0280|consen  120 SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVH-EFEAWTAKFSDKEPNL----VYTGGDDGSLSCWD  194 (339)
T ss_pred             hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccc-ceeeeeeecccCCCce----EEecCCCceEEEEE
Confidence               2457889999999999999999986665444333  245544 4568888888776642    79999999999999


Q ss_pred             CCC-ceeee-eecccCCCcEEEEECC-CCCEEEEEeCCCcEEEEecCC-ceeeeeeeccccCcceEEEEEeeCCC-eEEE
Q 016257          231 IST-WNKIG-HKRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKK-MEINHWSKRLHLGTSIALVEFCPTQR-VVLT  305 (392)
Q Consensus       231 ~~~-~~~~~-~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~  305 (392)
                      +|. ++.+. ..+.|...|.++.-+| .+.++++|+.|..|++||.++ ++++...  .- .+.|+.+.++|.-. .++.
T Consensus       195 ~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~--~v-~GGVWRi~~~p~~~~~lL~  271 (339)
T KOG0280|consen  195 IRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA--KV-GGGVWRIKHHPEIFHRLLA  271 (339)
T ss_pred             ecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC--cc-ccceEEEEecchhhhHHHH
Confidence            993 33332 2566788899998886 578999999999999999995 4444432  22 78999999999533 3334


Q ss_pred             EeCCCeEEEEEeecC
Q 016257          306 ASKEWGAMITKLTVP  320 (392)
Q Consensus       306 ~~~dg~i~iw~~~~~  320 (392)
                      ++.-+..+|-+.+..
T Consensus       272 ~CMh~G~ki~~~~~~  286 (339)
T KOG0280|consen  272 ACMHNGAKILDSSDK  286 (339)
T ss_pred             HHHhcCceEEEeccc
Confidence            444445666666543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=2.4e-10  Score=99.26  Aligned_cols=277  Identities=12%  Similarity=0.080  Sum_probs=186.1

Q ss_pred             eeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC-----------CC
Q 016257           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----------DG  134 (392)
Q Consensus        66 v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------dg  134 (392)
                      =+-+.|||.|.||++-...| |.+|--++-....++.        | ..|.-+.|||+.+||++-+.           ..
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~--------H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~  282 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY--------H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ  282 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc--------C-CCceeeecCCccceEEEecCCccccCcccCCCc
Confidence            45689999999999999888 9999766555443332        2 46889999999999998652           25


Q ss_pred             cEEEEeCCCCceeecccCCCC--c-EEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCc
Q 016257          135 HLRIMHWPSLRIILDEPKAHK--S-VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (392)
Q Consensus       135 ~i~i~d~~~~~~~~~~~~~~~--~-i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (392)
                      .++|||+.+|.....+....+  . -.-..||.|++++|-... .+|.||+..+...+..-.. .-..|....|+|.+..
T Consensus       283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ksl-ki~gIr~FswsP~~~l  360 (698)
T KOG2314|consen  283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSL-KISGIRDFSWSPTSNL  360 (698)
T ss_pred             eEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccccc-CCccccCcccCCCcce
Confidence            799999999988776655322  2 234579999999998776 5699998765433222111 2235888899999774


Q ss_pred             ceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEe----------CCCcEEEEecCCceeeee
Q 016257          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS----------KDGDICVVDVKKMEINHW  281 (392)
Q Consensus       212 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~  281 (392)
                      +.+..--+...-..+.+..+.+++.++....+.-.-..+.|-.+|.+|+.--          .-..+.|+.++.......
T Consensus       361 lAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve  440 (698)
T KOG2314|consen  361 LAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE  440 (698)
T ss_pred             EEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce
Confidence            2211111122234577777777777766666555556678888999987632          112466777776654433


Q ss_pred             eeccccCcceEEEEEeeCCCeEEEEeC---CCeEEEEEeec-Ccccc---------ceeeeeeeeeeeeeceEEEEeeec
Q 016257          282 SKRLHLGTSIALVEFCPTQRVVLTASK---EWGAMITKLTV-PADWK---------EWQIYSLLLALFLASAVVFYIFFE  348 (392)
Q Consensus       282 ~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~iw~~~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~d  348 (392)
                      ...  ....|...+|-|.|..+++-+.   ..++.+|.+.. ....+         ...+.+++.+.++..+.+.  +..
T Consensus       441 ~ve--lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~--s~~  516 (698)
T KOG2314|consen  441 VVE--LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALV--SRR  516 (698)
T ss_pred             eee--cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEec--ccc
Confidence            211  2678999999999997765543   36888998883 22221         2355667777766554443  367


Q ss_pred             ceeeeecccc
Q 016257          349 NSDSFWNFPV  358 (392)
Q Consensus       349 ~~i~~W~~~~  358 (392)
                      +.+.+.|...
T Consensus       517 g~l~F~D~~~  526 (698)
T KOG2314|consen  517 GDLEFYDTDY  526 (698)
T ss_pred             cceEEEecch
Confidence            8899999885

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.41  E-value=1e-09  Score=108.80  Aligned_cols=249  Identities=11%  Similarity=0.063  Sum_probs=162.9

Q ss_pred             eeEEEEcCC-CCeEEEEeCCCeEEEEEEeCCccceeeccccCCC-------CCCCCCeEEEEecCCCCEEEEEe-CCCcE
Q 016257           66 PMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP-------LQDAGPQKCLSFSVDGSRFAAGG-VDGHL  136 (392)
Q Consensus        66 v~~~~~sp~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~-~dg~i  136 (392)
                      ...++++++ ++.+++-..++.|+++|..... ...........       ...-.....+++.++++.|+++. .++.|
T Consensus       570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL  648 (1057)
T ss_pred             CceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence            346888875 5566666678889999975432 22221100000       00113458899999888776655 45679


Q ss_pred             EEEeCCCCceeecccC----------C-------CCcEEEEEecC-CCCeEEEEcCCCcEEEEECCCCeeeEEEecC---
Q 016257          137 RIMHWPSLRIILDEPK----------A-------HKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRN---  195 (392)
Q Consensus       137 ~i~d~~~~~~~~~~~~----------~-------~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~---  195 (392)
                      +++|..++... .+.+          .       -.....++++| ++..+++.+.++.|++||..++... .+...   
T Consensus       649 r~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~  726 (1057)
T PLN02919        649 REIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE  726 (1057)
T ss_pred             EEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence            99998765432 1110          0       11346799999 5566677777899999998776542 22110   


Q ss_pred             -----------CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec-------------c--------c
Q 016257          196 -----------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-------------L--------L  243 (392)
Q Consensus       196 -----------~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-------------~--------~  243 (392)
                                 .-.....++++|++..+    .++...++.|++||++++.......             .        .
T Consensus       727 ~~~~g~~~~~~~~~~P~GIavspdG~~L----YVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~  802 (1057)
T PLN02919        727 RNLNGSSGTSTSFAQPSGISLSPDLKEL----YIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL  802 (1057)
T ss_pred             ccCCCCccccccccCccEEEEeCCCCEE----EEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence                       01235679999999863    3666778999999998754321100             0        0


Q ss_pred             CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccc-----------cCcceEEEEEeeCCCeEEEEeCCCeE
Q 016257          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH-----------LGTSIALVEFCPTQRVVLTASKEWGA  312 (392)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~~~~dg~i  312 (392)
                      -.....++++++|.++++-..+++|++||..++........+.           .-.....++++++|+++++-+.++.|
T Consensus       803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I  882 (1057)
T PLN02919        803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI  882 (1057)
T ss_pred             ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence            1123578999999988888889999999998887654432110           01257889999999988888899999


Q ss_pred             EEEEeecCc
Q 016257          313 MITKLTVPA  321 (392)
Q Consensus       313 ~iw~~~~~~  321 (392)
                      ++|++....
T Consensus       883 rvid~~~~~  891 (1057)
T PLN02919        883 RYLDLNKGE  891 (1057)
T ss_pred             EEEECCCCc
Confidence            999997654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.41  E-value=2.2e-09  Score=104.65  Aligned_cols=296  Identities=11%  Similarity=0.139  Sum_probs=178.3

Q ss_pred             CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe
Q 016257            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (392)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~   82 (392)
                      .+.+|.++.+.++...+. +++.++        .|.+...+++....  .....   ..-...|.+++||||+..|+..+
T Consensus        74 ~~~~ivs~~yl~d~~~l~-~~~~~G--------di~~~~~~~~~~~~--~~E~V---G~vd~GI~a~~WSPD~Ella~vT  139 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLC-IALASG--------DIILVREDPDPDED--EIEIV---GSVDSGILAASWSPDEELLALVT  139 (928)
T ss_pred             CCCcEEEEEeccCCCcEE-EEECCc--------eEEEEEccCCCCCc--eeEEE---EEEcCcEEEEEECCCcCEEEEEe
Confidence            356899999999886633 333332        24455444322111  11111   22357899999999999999999


Q ss_pred             CCCeEEEEEEeC----Cc-------------------cceeeccccC---------C--------CCCCCCCeEEEEecC
Q 016257           83 TNGGCKLFEVYG----GA-------------------TDINLLAKKM---------P--------PLQDAGPQKCLSFSV  122 (392)
Q Consensus        83 ~d~~i~iw~~~~----~~-------------------~~~~~~~~~~---------~--------~~~~~~~v~~~~~s~  122 (392)
                      .++++.+....-    ..                   ...++.+...         +        .+.....-..++|-.
T Consensus       140 ~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG  219 (928)
T PF04762_consen  140 GEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG  219 (928)
T ss_pred             CCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC
Confidence            898887754211    00                   0001100000         0        011233556789999


Q ss_pred             CCCEEEEEeC---C---CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcC---CCcEEEEECCCCeeeEEEe
Q 016257          123 DGSRFAAGGV---D---GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVAWTFLT  193 (392)
Q Consensus       123 ~~~~l~~~~~---d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---d~~i~vwd~~~~~~~~~~~  193 (392)
                      ||.++|+.+.   .   ..++||+-+ |........-.+--..++|.|.|++||+...   ...|.+|. ++|.....+.
T Consensus       220 DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~  297 (928)
T PF04762_consen  220 DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFT  297 (928)
T ss_pred             CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEe
Confidence            9999998764   2   578999854 5544333322333457899999999998764   34566776 3554444443


Q ss_pred             c---CCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce--eeeeeccc-CCCcEEEEECCCC-CEEEEEeCCC
Q 016257          194 R---NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLL-RKPASVLSISLDG-KYLAMGSKDG  266 (392)
Q Consensus       194 ~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~--~~~~~~~~-~~~v~~~~~s~~~-~~l~~~~~dg  266 (392)
                      .   +....|..+.|++++..     ++..-.+ .|.+|-..+..  ..+.+... ...+..+.|+|.. ..|...+.+|
T Consensus       298 l~~~~~~~~v~~l~Wn~ds~i-----LAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g  371 (928)
T PF04762_consen  298 LRFDPEEEKVIELAWNSDSEI-----LAVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNG  371 (928)
T ss_pred             cCCCCCCceeeEEEECCCCCE-----EEEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCC
Confidence            3   33557999999999995     3333333 39999877643  22222221 2344558999954 4566776666


Q ss_pred             cEEEEecC----Cc----------------eeeeee-------------eccccCcceEEEEEeeCCCeEEEEeCCCeEE
Q 016257          267 DICVVDVK----KM----------------EINHWS-------------KRLHLGTSIALVEFCPTQRVVLTASKEWGAM  313 (392)
Q Consensus       267 ~i~iwd~~----~~----------------~~~~~~-------------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  313 (392)
                      .+..++..    .+                ..+...             .......+|.+++|++++..+++-..||.+.
T Consensus       372 ~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~  451 (928)
T PF04762_consen  372 QYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLS  451 (928)
T ss_pred             cEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEE
Confidence            66655432    11                000000             0111267899999999998899999999999


Q ss_pred             EEEeecC
Q 016257          314 ITKLTVP  320 (392)
Q Consensus       314 iw~~~~~  320 (392)
                      +|.....
T Consensus       452 ~~~~~~~  458 (928)
T PF04762_consen  452 IYEWDLK  458 (928)
T ss_pred             EEEecCC
Confidence            9996544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.39  E-value=4.2e-12  Score=123.53  Aligned_cols=205  Identities=16%  Similarity=0.240  Sum_probs=158.4

Q ss_pred             EeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEE
Q 016257           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (392)
Q Consensus        58 ~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  137 (392)
                      .++.+-..|.++.-+|...+.++|+.||.+++|....++.+......      ....|+.+.|+.+|+.+..+..||.+.
T Consensus      2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~------g~s~vtr~~f~~qGnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA------GNSRVTRSRFNHQGNKFGIVDGDGDLS 2276 (2439)
T ss_pred             EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc------CcchhhhhhhcccCCceeeeccCCcee
Confidence            34455667888999999999999999999999998877654443321      237889999999999999999999999


Q ss_pred             EEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEc---CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE
Q 016257          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS---TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (392)
Q Consensus       138 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (392)
                      +|.+. .+.....+.|.....++.|-.  ..+++++   .++.+.+||.-......-+..-|.+.++++++-|..+.   
T Consensus      2277 l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~ql--- 2350 (2439)
T KOG1064|consen 2277 LWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQL--- 2350 (2439)
T ss_pred             ecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceE---
Confidence            99986 455556667777888888864  5566654   56889999975432222222334557999999999886   


Q ss_pred             EEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccc
Q 016257          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH  286 (392)
Q Consensus       215 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  286 (392)
                        +++|+.+|.|++||++..+.+..++.         +. ...++++|+..|.++||++.....+..+...|
T Consensus      2351 --lisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2351 --LISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred             --EEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence              89999999999999998776655543         44 56789999999999999999887776665444

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.36  E-value=3.2e-10  Score=97.52  Aligned_cols=244  Identities=14%  Similarity=0.107  Sum_probs=170.0

Q ss_pred             CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC--------
Q 016257           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--------  133 (392)
Q Consensus        62 h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------  133 (392)
                      -.-++..++|||.|.+|++....+ |.+|.-........+.         ...|..+.|||++++|.+=+..        
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~---------~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e  100 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR---------HPDVKYLDFSPNEKYLVTWSREPIIEPEIE  100 (561)
T ss_pred             cCcchhheeecCcchheehhhccc-eEEccccchhheeeee---------cCCceecccCcccceeeeeccCCccChhhc
Confidence            456889999999999999988877 9999987766433332         3478999999999999985533        


Q ss_pred             -------CcEEEEeCCCCceeecccCCCCc--EE-EEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEE
Q 016257          134 -------GHLRIMHWPSLRIILDEPKAHKS--VL-DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELC  203 (392)
Q Consensus       134 -------g~i~i~d~~~~~~~~~~~~~~~~--i~-~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~  203 (392)
                             ..+.+||+.++..+..+.....+  .. -+.|+-+.+++|-.. ...++|+++...-....+..-....+...
T Consensus       101 ~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t~n~~~~p~~~lr~~gi~dF  179 (561)
T COG5354         101 ISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEITDNIEEHPFKNLRPVGILDF  179 (561)
T ss_pred             cCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEecCCccccCchhhccccceeeE
Confidence                   35999999999988776655544  44 678888888776543 35699999732221111211122357888


Q ss_pred             EecCCCCcceEEEE--EEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEe-----------CCCcEEE
Q 016257          204 RFSKDGTKPFLFCT--VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-----------KDGDICV  270 (392)
Q Consensus       204 ~~~~~~~~~~~~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------~dg~i~i  270 (392)
                      .|+|.+.+.-+++.  -..+..+.+++|.+..+..+.........-..+.|.+.|++|++-.           ....++|
T Consensus       180 sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl  259 (561)
T COG5354         180 SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYL  259 (561)
T ss_pred             EecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEE
Confidence            99998665432222  2356778999999997777655554455556789999998876532           1356888


Q ss_pred             EecCCceeeeeeeccccCcceEEEEEeeCCCeEEEE--eCCCeEEEEEeec
Q 016257          271 VDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA--SKEWGAMITKLTV  319 (392)
Q Consensus       271 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~dg~i~iw~~~~  319 (392)
                      +++.........  .. .++|...+|.|.++.+++.  -.+-.+.+++++.
T Consensus       260 ~~~~e~~i~V~~--~~-~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~  307 (561)
T COG5354         260 LRITERSIPVEK--DL-KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG  307 (561)
T ss_pred             Eeecccccceec--cc-cccceeeeecccCCceeEEecccccceeeccccc
Confidence            888855444332  22 7899999999998866544  4677777777764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=1.3e-09  Score=97.57  Aligned_cols=217  Identities=12%  Similarity=0.021  Sum_probs=132.4

Q ss_pred             eeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCe-EEEEeC---CCeEEEEEEeCCccceeeccccCCCCCCC
Q 016257           37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD-FVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQDA  112 (392)
Q Consensus        37 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~-l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  112 (392)
                      -+||..|.++.+.       ..+... +......|+|||+. ++..+.   +..|.++|+.+++... +..       ..
T Consensus       169 ~~l~~~d~dg~~~-------~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~-------~~  232 (419)
T PRK04043        169 SNIVLADYTLTYQ-------KVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IAS-------SQ  232 (419)
T ss_pred             ceEEEECCCCCce-------eEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-Eec-------CC
Confidence            4577766554321       112222 37789999999985 664443   3468888887765322 111       23


Q ss_pred             CCeEEEEecCCCCEEEEEe-CC--CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcC-CC--cEEEEECCCC
Q 016257          113 GPQKCLSFSVDGSRFAAGG-VD--GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDG  186 (392)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~-~d--g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~vwd~~~~  186 (392)
                      +......|+|||+.|+... .+  ..|.++|+.+++.. .+..+........|+|||+.|+..+. .+  .|++.|+.++
T Consensus       233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g  311 (419)
T PRK04043        233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG  311 (419)
T ss_pred             CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            4556788999998776543 23  46888888777643 33333333345689999998776653 23  5888888777


Q ss_pred             eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCc--------cEEEEEeCCCceeeeeecccCCCcEEEEECCCCCE
Q 016257          187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK--------ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY  258 (392)
Q Consensus       187 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d--------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~  258 (392)
                      +..+......    ....|+|+|+.+.    ++....        ..|.+.|+.++... .+... .......|+|||+.
T Consensus       312 ~~~rlt~~g~----~~~~~SPDG~~Ia----~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~  381 (419)
T PRK04043        312 SVEQVVFHGK----NNSSVSTYKNYIV----YSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGS  381 (419)
T ss_pred             CeEeCccCCC----cCceECCCCCEEE----EEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCE
Confidence            6544332211    1248999999743    222221        47899999887653 33322 23346899999998


Q ss_pred             EEEEeCCC---cEEEEecCCceeee
Q 016257          259 LAMGSKDG---DICVVDVKKMEINH  280 (392)
Q Consensus       259 l~~~~~dg---~i~iwd~~~~~~~~  280 (392)
                      |+..+.++   .+.+.++.......
T Consensus       382 I~f~~~~~~~~~L~~~~l~g~~~~~  406 (419)
T PRK04043        382 IMFIKYLGNQSALGIIRLNYNKSFL  406 (419)
T ss_pred             EEEEEccCCcEEEEEEecCCCeeEE
Confidence            87766432   36677776654443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=4.9e-11  Score=106.51  Aligned_cols=236  Identities=12%  Similarity=0.129  Sum_probs=171.6

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeecc--------ccCCCCCCCCCeEEEEecCCCCEEEEEeCCC
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLA--------KKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (392)
                      .....|++|+....++|+|+.||.+++..+.+.........        -....-.|.+.|..+.|+.+.+.|-+...+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            45678999999999999999999999998876543222111        0111234889999999999999999999999


Q ss_pred             cEEEEeCCCCceeecccCCC--CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeE-EEecCCCcceEEEEecCCCCc
Q 016257          135 HLRIMHWPSLRIILDEPKAH--KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT-FLTRNSDEKIELCRFSKDGTK  211 (392)
Q Consensus       135 ~i~i~d~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~  211 (392)
                      .|.+|-+-.+.....+....  +.|.+++|+.||..+.....||.|.+=.++..+... .+.+   .....+.|++|.+.
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg---~~l~hv~ws~D~~~  170 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG---QLLAHVLWSEDLEQ  170 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch---heccceeecccHHH
Confidence            99999998887665554433  468999999999999999999999887775443221 1221   13567889999887


Q ss_pred             ceEEEEEEeCCccEEEEEeCCCce-------e-e---eeecccCCCcEEEEEC--------CCCCEEEEEeCCCcEEEEe
Q 016257          212 PFLFCTVQRGDKALLAVYDISTWN-------K-I---GHKRLLRKPASVLSIS--------LDGKYLAMGSKDGDICVVD  272 (392)
Q Consensus       212 ~~~~~~~~~~~d~~i~v~d~~~~~-------~-~---~~~~~~~~~v~~~~~s--------~~~~~l~~~~~dg~i~iwd  272 (392)
                           ++.+-..|.+.+||....-       + +   ..+......+..+.|.        |+...|+++-.+|.+.|..
T Consensus       171 -----~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR  245 (1189)
T KOG2041|consen  171 -----ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMR  245 (1189)
T ss_pred             -----HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhh
Confidence                 5566667899999976321       1 0   1111122235555553        5778999999999999987


Q ss_pred             cCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC
Q 016257          273 VKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE  309 (392)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  309 (392)
                      -.+...+..+..   +-.+..+.|+++|..|+.++.|
T Consensus       246 ~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  246 SENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             hcCCCCCeEEec---ccEeecceecCCCcEEEEccCc
Confidence            666555554433   4578999999999999999876

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.34  E-value=1e-11  Score=107.65  Aligned_cols=254  Identities=13%  Similarity=0.091  Sum_probs=173.3

Q ss_pred             CCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe
Q 016257           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (392)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  131 (392)
                      .......+.||+..|..++--.+.+.+++++.|.+|++|.++..........-......|..+|.++.|-.+.++++++ 
T Consensus       724 ~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-  802 (1034)
T KOG4190|consen  724 DHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-  802 (1034)
T ss_pred             ceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-
Confidence            3444557889999999998888888999999999999999976543222111122233588999999999988888764 


Q ss_pred             CCCcEEEEeCCCCceeecccCC--CCcEEEEEecC--CCCeEEE-EcCCCcEEEEECCCCeeeEEEec----CCCcceEE
Q 016257          132 VDGHLRIMHWPSLRIILDEPKA--HKSVLDMDFSL--DSEFLAT-TSTDGSARIWKTEDGVAWTFLTR----NSDEKIEL  202 (392)
Q Consensus       132 ~dg~i~i~d~~~~~~~~~~~~~--~~~i~~i~~~~--~~~~l~~-~~~d~~i~vwd~~~~~~~~~~~~----~~~~~v~~  202 (392)
                       ||-|.+||.--++.+.++...  ++.+..+..-+  +...++. ++...+|+++|.+..+....+..    ..+..+++
T Consensus       803 -D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~  881 (1034)
T KOG4190|consen  803 -DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA  881 (1034)
T ss_pred             -cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence             789999998766655433221  22333333333  3344444 47789999999998877666642    23356899


Q ss_pred             EEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEE-EecCCceeeee
Q 016257          203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV-VDVKKMEINHW  281 (392)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~~  281 (392)
                      ++..+.|++     ++.+-..|.|.+.|.++++.+...+........++ .|..+.|+....|.++.+ |....+.....
T Consensus       882 iaVa~~GN~-----lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q  955 (1034)
T KOG4190|consen  882 IAVADKGNK-----LAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQ  955 (1034)
T ss_pred             EEeccCcch-----hhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeec
Confidence            999999998     78888899999999999998877776665555554 366677887778888888 87666554333


Q ss_pred             eeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEe
Q 016257          282 SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (392)
Q Consensus       282 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  317 (392)
                      ....  ..+..-+  -.-|.-|+++...+.+.+|.-
T Consensus       956 ~kpp--pepahfl--qsvgpSLV~a~~Gn~lgVYad  987 (1034)
T KOG4190|consen  956 DKPP--PEPAHFL--QSVGPSLVTAQNGNILGVYAD  987 (1034)
T ss_pred             cCCC--Ccchhhh--hccCceeEEeccCcEEEEEec
Confidence            2111  1111111  113556777777777777743

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.32  E-value=1.1e-11  Score=120.75  Aligned_cols=225  Identities=14%  Similarity=0.161  Sum_probs=167.7

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEe
Q 016257          126 RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF  205 (392)
Q Consensus       126 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~  205 (392)
                      .+.....++...-|.-+.+...  ...+-..+.++.=+|...+.++|+.||.+++|.-..+..+..+.......++.+.|
T Consensus      2182 ~~~~~n~~~~~~tq~~~~~~~~--~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f 2259 (2439)
T KOG1064|consen 2182 RFTPSNLPWLGSTQTSRGASVM--IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRF 2259 (2439)
T ss_pred             cCCcccCCccccceecccceeE--eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhh
Confidence            3333334444444544332222  22333578888889999999999999999999999888888887655678999999


Q ss_pred             cCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEe---CCCcEEEEecCCceeeeee
Q 016257          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS---KDGDICVVDVKKMEINHWS  282 (392)
Q Consensus       206 ~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~  282 (392)
                      +.+|..     ...+..||.+.+|... .++....+.|....+++.|-.  ..+++.+   .++.+.+||.--......+
T Consensus      2260 ~~qGnk-----~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v 2331 (2439)
T KOG1064|consen 2260 NHQGNK-----FGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV 2331 (2439)
T ss_pred             cccCCc-----eeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee
Confidence            999987     6788889999999988 466667777888888887764  5666654   4678999997654444444


Q ss_pred             eccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeeeeeeeeeeeeceEEEEeeecceeeeecccccccc
Q 016257          283 KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVARNQ  362 (392)
Q Consensus       283 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~  362 (392)
                      ...| .+.++++++.|..+.|++||.+|.|++||++..+-.+.|+..       .......++...|.+++|++..-.-+
T Consensus      2332 ~~~H-~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~~-------~~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2332 HTCH-DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQAL-------DTREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred             eeec-CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhhh-------hhhheeeccCcccceEEEEccccchh
Confidence            4788 899999999999999999999999999999876655555441       12334555667999999999877555


Q ss_pred             cCCCCc
Q 016257          363 HGGPKI  368 (392)
Q Consensus       363 ~~~p~~  368 (392)
                      ...|.+
T Consensus      2404 ~~~p~e 2409 (2439)
T KOG1064|consen 2404 HTFPSE 2409 (2439)
T ss_pred             hcCchh
Confidence            544543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.32  E-value=8.3e-09  Score=88.75  Aligned_cols=261  Identities=9%  Similarity=-0.006  Sum_probs=152.5

Q ss_pred             CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC----------CCcEEEEeCCCCceeecccCCC
Q 016257           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----------DGHLRIMHWPSLRIILDEPKAH  154 (392)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~  154 (392)
                      ++|.+.|..+.+....+....        .-..+ +|||++.|+++..          +..|.+||..+.+.+.++.-..
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~--------~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~   97 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGF--------LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE   97 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccC--------CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence            789999999887655554322        12334 9999999887765          6889999999999886665432


Q ss_pred             C-------cEEEEEecCCCCeEEEEc-C-CCcEEEEECCCCeeeEEEecCCCcceE------EEEecCCCCcceEEEEEE
Q 016257          155 K-------SVLDMDFSLDSEFLATTS-T-DGSARIWKTEDGVAWTFLTRNSDEKIE------LCRFSKDGTKPFLFCTVQ  219 (392)
Q Consensus       155 ~-------~i~~i~~~~~~~~l~~~~-~-d~~i~vwd~~~~~~~~~~~~~~~~~v~------~~~~~~~~~~~~~~~~~~  219 (392)
                      +       ....++++|||++|++.. . +..|.+.|+.+++.+..+..+....+.      .+..+.|+...    .++
T Consensus        98 ~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~----~v~  173 (352)
T TIGR02658        98 GPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLA----KVG  173 (352)
T ss_pred             CchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceE----EEE
Confidence            2       234788999999998776 3 688999999999999888753321111      11222333321    122


Q ss_pred             eCCccEEEEEeCCCceeeeeecccCCCc-EEEEECC-CCCEEEEEeCCCcEEEEecCCc-----eeeeeeecc-----cc
Q 016257          220 RGDKALLAVYDISTWNKIGHKRLLRKPA-SVLSISL-DGKYLAMGSKDGDICVVDVKKM-----EINHWSKRL-----HL  287 (392)
Q Consensus       220 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v-~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~-----~~  287 (392)
                      ...+|....   .+   ...+.....++ ....+++ +|+++++..+ |+|.+.|+...     +....+...     -.
T Consensus       174 ~d~~g~~~~---~~---~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wr  246 (352)
T TIGR02658       174 YGTKGNPKI---KP---TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWR  246 (352)
T ss_pred             ecCCCceEE---ee---eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccC
Confidence            222222110   00   00011100000 0013455 8888888776 99999996443     222221111     01


Q ss_pred             CcceEEEEEeeCCCeEEEEeC----------CCeEEEEEeecCccccceeeeeeeeeeee--ece-EEEEee-ecceeee
Q 016257          288 GTSIALVEFCPTQRVVLTASK----------EWGAMITKLTVPADWKEWQIYSLLLALFL--ASA-VVFYIF-FENSDSF  353 (392)
Q Consensus       288 ~~~i~~~~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~-~d~~i~~  353 (392)
                      .+.+.-++++++++.++....          .+.|.++|....+......+...+.+..+  ... .++... .++.|.+
T Consensus       247 P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsV  326 (352)
T TIGR02658       247 PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYI  326 (352)
T ss_pred             CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEE
Confidence            344555999999998877432          24688888776654443332222222222  122 333333 5788999


Q ss_pred             ecccccccccCC
Q 016257          354 WNFPVARNQHGG  365 (392)
Q Consensus       354 W~~~~~~~~~~~  365 (392)
                      .|..+++.+...
T Consensus       327 iD~~t~k~i~~i  338 (352)
T TIGR02658       327 FDAETGKELSSV  338 (352)
T ss_pred             EECcCCeEEeee
Confidence            999988766543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.32  E-value=2.7e-10  Score=93.22  Aligned_cols=283  Identities=10%  Similarity=0.126  Sum_probs=171.5

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ..|++++++.++..+   +..|-..      +.+.-+.+..+-...    ........|...+..+-|+-...++++.+.
T Consensus        68 P~~~~~~~y~~e~~~---L~vg~~n------gtvtefs~sedfnkm----~~~r~~~~h~~~v~~~if~~~~e~V~s~~~  134 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRR---LYVGQDN------GTVTEFALSEDFNKM----TFLKDYLAHQARVSAIVFSLTHEWVLSTGK  134 (404)
T ss_pred             CCCceEeeeeccceE---EEEEEec------ceEEEEEhhhhhhhc----chhhhhhhhhcceeeEEecCCceeEEEecc
Confidence            467888888887643   4444332      234444443332221    222345578999999999988889999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC--CCceeecccCCCCcEEEEE
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP--SLRIILDEPKAHKSVLDMD  161 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~i~~i~  161 (392)
                      |..+.---.+.+..........        ...++.+.-.  +...|...|.|..-.+.  .-..+.++.+|.+.+.+++
T Consensus       135 dk~~~~hc~e~~~~lg~Y~~~~--------~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~  204 (404)
T KOG1409|consen  135 DKQFAWHCTESGNRLGGYNFET--------PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLK  204 (404)
T ss_pred             ccceEEEeeccCCcccceEeec--------cCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEE
Confidence            9855433334443222211110        1111111111  45556666766665543  4455677788888999999


Q ss_pred             ecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeee--
Q 016257          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH--  239 (392)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~--  239 (392)
                      |.|..+.|.+|..|..+.+||+-.++-.......+...|..+...+--+.     +.+++.|+.|.+||++.......  
T Consensus       205 Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~-----l~S~~edg~i~~w~mn~~r~etpew  279 (404)
T KOG1409|consen  205 WDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ-----LISCGEDGGIVVWNMNVKRVETPEW  279 (404)
T ss_pred             EcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhee-----eeeccCCCeEEEEeccceeecCccc
Confidence            99999999999999999999997665554444444457888877776666     79999999999999975332100  


Q ss_pred             ---------------------------eccc-----CCCcEEEEECCCCCEEEEEeCCCcEEEEe--------cCCceee
Q 016257          240 ---------------------------KRLL-----RKPASVLSISLDGKYLAMGSKDGDICVVD--------VKKMEIN  279 (392)
Q Consensus       240 ---------------------------~~~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd--------~~~~~~~  279 (392)
                                                 ++.|     ...+ +...+.+.....+-+..-.+++-|        ... ..+
T Consensus       280 l~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~av-c~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~-t~L  357 (404)
T KOG1409|consen  280 LDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAV-CGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEER-TPL  357 (404)
T ss_pred             cccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhc-CcccccCccccccccceeEEEEecccchhhhcCCC-Ccc
Confidence                                       0000     1111 111111111111222222344443        222 122


Q ss_pred             eeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          280 HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       280 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      ......  ...|+.+.+..+-.+|++++.|..|+|||++
T Consensus       358 A~phei--~tgItamhlqetlglLvTsG~~Rvi~iwd~~  394 (404)
T KOG1409|consen  358 AIPHEI--KTGITAMHLQETLGLLVTSGTDRVIKIWDVR  394 (404)
T ss_pred             cccccc--ccceeEEEhhhhccceeecCCceEEEEEech
Confidence            222222  3579999998888899999999999999987

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.31  E-value=1.1e-09  Score=86.76  Aligned_cols=239  Identities=11%  Similarity=0.043  Sum_probs=154.1

Q ss_pred             EEEEcC-----CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeC
Q 016257           68 TIAVNP-----SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHW  141 (392)
Q Consensus        68 ~~~~sp-----~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~  141 (392)
                      .+.|.|     ...+||.|+..|...+|...+.+....+...      +...|.-+.=..+ ...+..++.|.++++.++
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~------snn~v~~~~r~cd~~~~~~i~sndht~k~~~~  145 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDV------SNNDVTLVKRYCDLKFPLNIASNDHTGKTMVV  145 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecc------cccchhhhhhhcccccceeeccCCcceeEEEE
Confidence            455665     3458999999999999999877643333221      1111111110111 124556678888888887


Q ss_pred             CCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCe-ee-EEEecCCCcceEEEEecCCCCcceEEEEEE
Q 016257          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-AW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (392)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~-~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (392)
                      +-+..........-.+.++++++|++++++.+....|..|.+.... .+ ..........-.+..|+.....     +++
T Consensus       146 ~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~-----FAv  220 (344)
T KOG4532|consen  146 SGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQ-----FAV  220 (344)
T ss_pred             ecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcce-----EEE
Confidence            6443322221111237899999999999999999999999987542 22 2233333444567888887776     799


Q ss_pred             eCCccEEEEEeCCCceee-----eeecccCCCcEEEEECCCC--CEEEEEeCCCcEEEEecCCceeeeeeec------cc
Q 016257          220 RGDKALLAVYDISTWNKI-----GHKRLLRKPASVLSISLDG--KYLAMGSKDGDICVVDVKKMEINHWSKR------LH  286 (392)
Q Consensus       220 ~~~d~~i~v~d~~~~~~~-----~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~  286 (392)
                      +..||.+.|||++.....     .+...|.+.++.+.|++.|  .+|+..-.-+.+.+.|+++++..+.+..      .|
T Consensus       221 ~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~  300 (344)
T KOG4532|consen  221 VFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKH  300 (344)
T ss_pred             EecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccc
Confidence            999999999999975432     2233478899999999866  3455555567899999999875544421      22


Q ss_pred             cCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          287 LGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       287 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      ....|..-.|+.++.-+.+.+++ .+.=|++.
T Consensus       301 ~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~  331 (344)
T KOG4532|consen  301 NTQHIFGTNFNNENESNDVKNEL-QGAEYNIL  331 (344)
T ss_pred             cccccccccccCCCcccccccch-hhheeecc
Confidence            13447778888887777766665 33334443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=6.6e-09  Score=93.15  Aligned_cols=193  Identities=10%  Similarity=0.011  Sum_probs=123.0

Q ss_pred             CeEEEEecCCCCE-EEEEeCC---CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEE-cCC--CcEEEEECCCC
Q 016257          114 PQKCLSFSVDGSR-FAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STD--GSARIWKTEDG  186 (392)
Q Consensus       114 ~v~~~~~s~~~~~-l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d--~~i~vwd~~~~  186 (392)
                      ......|+|||+. ++..+.+   ..|+++|+.+++.... ....+......|+|||+.++.. +.+  ..|.++|+..+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l-t~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI-ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE-ecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6678999999985 6654433   4689999988876432 2344456677899999877643 333  46888888776


Q ss_pred             eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC-
Q 016257          187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD-  265 (392)
Q Consensus       187 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-  265 (392)
                      +. ..+..... ......|+|||+.+++  .........|++.|+.+++..+.... ...  ...|||||++|+..+.. 
T Consensus       268 ~~-~~LT~~~~-~d~~p~~SPDG~~I~F--~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~  340 (419)
T PRK04043        268 TL-TQITNYPG-IDVNGNFVEDDKRIVF--VSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRET  340 (419)
T ss_pred             cE-EEcccCCC-ccCccEECCCCCEEEE--EECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCC
Confidence            54 33433222 2345689999997432  11112234788889987766433221 111  24899999998877643 


Q ss_pred             --------CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC-CeEEEEEee
Q 016257          266 --------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WGAMITKLT  318 (392)
Q Consensus       266 --------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iw~~~  318 (392)
                              ..|.+.|+.+++...... .   .......|+|||+.|+..+.+ +.-.++-++
T Consensus       341 ~~~~~~~~~~I~v~d~~~g~~~~LT~-~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~  398 (419)
T PRK04043        341 NNEFGKNTFNLYLISTNSDYIRRLTA-N---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIR  398 (419)
T ss_pred             CcccCCCCcEEEEEECCCCCeEECCC-C---CCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence                    268888998887654432 1   223368899999987766543 444455544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.29  E-value=1.8e-08  Score=98.30  Aligned_cols=286  Identities=14%  Similarity=0.127  Sum_probs=177.7

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEee-----CCCCCeeEEEEcCCCCeEEE
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-----ESEGDPMTIAVNPSGDDFVC   80 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~sp~~~~l~~   80 (392)
                      ++...+|.+.... .+++++...    ....+.+-.+....     .......+.     ...+.|.++.+-++...++.
T Consensus        23 ~~~~~~~d~~sd~-i~~~~~~~~----~~~~i~~~~~~~~~-----~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~   92 (928)
T PF04762_consen   23 PITATAFDSDSDS-IYFVLGPNE----IDYVIELDRFSQDG-----SVEVLASWDAPLPDDPNDKIVSFQYLADSESLCI   92 (928)
T ss_pred             ccceEEEecCCCe-EEEEECCCC----cceEEEEEeeccCC-----ceeEEEeccccCCcCCCCcEEEEEeccCCCcEEE
Confidence            5677788877655 445555332    12345555544332     001111221     33578999999999999999


Q ss_pred             EeCCCeEEEE----EEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC--------------
Q 016257           81 STTNGGCKLF----EVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP--------------  142 (392)
Q Consensus        81 ~~~d~~i~iw----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~--------------  142 (392)
                      +..+|.|.+.    +.....  ....+.      -...|.+++||||+..|+..+.++++.+.+-.              
T Consensus        93 ~~~~Gdi~~~~~~~~~~~~~--~E~VG~------vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~  164 (928)
T PF04762_consen   93 ALASGDIILVREDPDPDEDE--IEIVGS------VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDF  164 (928)
T ss_pred             EECCceEEEEEccCCCCCce--eEEEEE------EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCcccc
Confidence            9999999998    333322  111111      24689999999999999999989888776420              


Q ss_pred             -C--------Cceeeccc------------C------------CCCcEEEEEecCCCCeEEEEcC---C---CcEEEEEC
Q 016257          143 -S--------LRIILDEP------------K------------AHKSVLDMDFSLDSEFLATTST---D---GSARIWKT  183 (392)
Q Consensus       143 -~--------~~~~~~~~------------~------------~~~~i~~i~~~~~~~~l~~~~~---d---~~i~vwd~  183 (392)
                       .        |+.-.++.            .            ....-..|+|-.||+++|+.+-   .   +.++||+-
T Consensus       165 ~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R  244 (928)
T PF04762_consen  165 GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR  244 (928)
T ss_pred             CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC
Confidence             0        00000000            0            1123457889999999998764   2   57999996


Q ss_pred             CCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeC---CccEEEEEeCCCcee---eeeecccCCCcEEEEECCCCC
Q 016257          184 EDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG---DKALLAVYDISTWNK---IGHKRLLRKPASVLSISLDGK  257 (392)
Q Consensus       184 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~d~~i~v~d~~~~~~---~~~~~~~~~~v~~~~~s~~~~  257 (392)
                      + |....+.. ...+--.+++|.|.|..     +++..   ....|.+|..+..+.   ...+......+..+.|++|+.
T Consensus       245 e-G~L~stSE-~v~gLe~~l~WrPsG~l-----IA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~  317 (928)
T PF04762_consen  245 E-GELQSTSE-PVDGLEGALSWRPSGNL-----IASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSE  317 (928)
T ss_pred             C-ceEEeccc-cCCCccCCccCCCCCCE-----EEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCC
Confidence            4 55433333 33334467899999985     23222   245667776543221   111223456789999999999


Q ss_pred             EEEEEeCCCcEEEEecCCcee--eeeeeccccCcceEEEEEeeCCC-eEEEEeCCCeEEEEEee
Q 016257          258 YLAMGSKDGDICVVDVKKMEI--NHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLT  318 (392)
Q Consensus       258 ~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~  318 (392)
                      .||....|. |.+|-..+..-  .+.+.-.. ...+..+.|+|... .|...+.+|.+..+++.
T Consensus       318 iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~-~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~  379 (928)
T PF04762_consen  318 ILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS-SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA  379 (928)
T ss_pred             EEEEEecCC-ceEEEeeCCEEEEEEEEEccC-CCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence            999988665 99999888652  22222122 34556699999655 57777776788776654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.29  E-value=1.9e-08  Score=90.16  Aligned_cols=255  Identities=8%  Similarity=-0.033  Sum_probs=155.3

Q ss_pred             CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEE-EEecCCCCEEEEEeCCCcEEEEeCCCCceeecccC
Q 016257           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC-LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (392)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  152 (392)
                      ++..++.++.++.+..+|..+++...+....        +.+.+ ...  .+..++.++.++.++.+|.++++.+.+...
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--------~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  173 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS--------SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSR  173 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccC--------ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence            4667888889999999999888765543221        11111 111  345777788899999999999987665443


Q ss_pred             CCCcEE-----EEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCc---ce-------EEEEecCCCCcceEEEE
Q 016257          153 AHKSVL-----DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE---KI-------ELCRFSKDGTKPFLFCT  217 (392)
Q Consensus       153 ~~~~i~-----~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~---~v-------~~~~~~~~~~~~~~~~~  217 (392)
                      ....+.     +...  .+..++.+..++.+..+|.++++.+.........   .+       ....+  .+..     +
T Consensus       174 ~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~-----v  244 (377)
T TIGR03300       174 VTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQ-----V  244 (377)
T ss_pred             CCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCE-----E
Confidence            222111     1111  1346778888899999999998776543211100   00       01111  1233     5


Q ss_pred             EEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEe
Q 016257          218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (392)
Q Consensus       218 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  297 (392)
                      +.++.++.+..+|.++++.+-....  .....+.  ..+..+++++.||.+..+|..+++.+-...... ......... 
T Consensus       245 y~~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~-~~~~ssp~i-  318 (377)
T TIGR03300       245 YAVSYQGRVAALDLRSGRVLWKRDA--SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELK-YRQLTAPAV-  318 (377)
T ss_pred             EEEEcCCEEEEEECCCCcEEEeecc--CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcccccc-CCccccCEE-
Confidence            6667789999999999877644432  1112222  246788888899999999999998764432111 222233333 


Q ss_pred             eCCCeEEEEeCCCeEEEEEeecCccccceeeee--eeeeeeeeceEEEEeeecceeeee
Q 016257          298 PTQRVVLTASKEWGAMITKLTVPADWKEWQIYS--LLLALFLASAVVFYIFFENSDSFW  354 (392)
Q Consensus       298 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~~W  354 (392)
                       .+..|++++.+|.+++++...++..-.+.+..  ...........++.++.||.++.+
T Consensus       319 -~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       319 -VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             -ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence             45688899999999999987665432222211  111113345567778888887654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=1.2e-09  Score=98.63  Aligned_cols=238  Identities=14%  Similarity=0.085  Sum_probs=164.5

Q ss_pred             eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCC-----------
Q 016257            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-----------   75 (392)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~-----------   75 (392)
                      -.++.|+|.+    ++++|++.         .+..+|..      ..+....+..|+..|+.+.|.|-.           
T Consensus        18 ~~A~Dw~~~G----LiAygshs---------lV~VVDs~------s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~   78 (1062)
T KOG1912|consen   18 RNAADWSPSG----LIAYGSHS---------LVSVVDSR------SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSS   78 (1062)
T ss_pred             ccccccCccc----eEEEecCc---------eEEEEehh------hhhhhhccccCccceeEEEeccCCCchhccCcccc
Confidence            3467899987    78887773         14444432      334456678899999999998721           


Q ss_pred             -CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC---CC-CEEEEEeCCCcEEEEeCCCCceeecc
Q 016257           76 -DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV---DG-SRFAAGGVDGHLRIMHWPSLRIILDE  150 (392)
Q Consensus        76 -~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~  150 (392)
                       -.||++...|.|.+||.........+.       ++..++..++|-+   +. ..|++-....++.+|+..+|+...+.
T Consensus        79 ~lliAsaD~~GrIil~d~~~~s~~~~l~-------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~  151 (1062)
T KOG1912|consen   79 QLLIASADISGRIILVDFVLASVINWLS-------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY  151 (1062)
T ss_pred             ceeEEeccccCcEEEEEehhhhhhhhhc-------CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc
Confidence             257788889999999998765433332       3567888888866   33 46667677889999999999998877


Q ss_pred             cCCCCcEEEEEecC-CCCeEEEEcCCCcEEEEECCC-------CeeeEEEecCCC-----------c-------------
Q 016257          151 PKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTED-------GVAWTFLTRNSD-----------E-------------  198 (392)
Q Consensus       151 ~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~-------~~~~~~~~~~~~-----------~-------------  198 (392)
                      ...+....++.+.| |.+.+..-+..|.+.+.+.-.       ++..+.-..+.+           .             
T Consensus       152 ~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fit  231 (1062)
T KOG1912|consen  152 DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFIT  231 (1062)
T ss_pred             ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHH
Confidence            77777788899999 666666666667776665421       122111111110           0             


Q ss_pred             ceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCC--CEEEEEeCCCcEEEEecCC
Q 016257          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG--KYLAMGSKDGDICVVDVKK  275 (392)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~  275 (392)
                      ....++|+|.-+.     .+.......+.++|++-..++.......+.+.-+.+-|++  ..|++.-.||.+.+|-.+.
T Consensus       232 y~a~faf~p~~rn-----~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  232 YCAQFAFSPHWRN-----ILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             HHHhhhcChhhhc-----eEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            0113567787665     2333345679999999888887777777777788888875  5699999999999997654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.25  E-value=1.3e-10  Score=96.93  Aligned_cols=166  Identities=14%  Similarity=0.139  Sum_probs=121.1

Q ss_pred             CeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC---CcEEEEeC
Q 016257           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHW  141 (392)
Q Consensus        65 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~  141 (392)
                      .+..+..+|++++||.+..+....++++.......++....    .-...-+++.|..+......+..-   ..+.+|..
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~----~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS----CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe----ecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence            44556678899999999888888888887655322221110    112234555555555555554433   44555555


Q ss_pred             CCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeC
Q 016257          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (392)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (392)
                      ..+. ...+.+|-..+++++|+||+++|+++..|..|++-....-..+..+..+|.+-|..++.-++..      +++++
T Consensus       140 ~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~------LlS~s  212 (390)
T KOG3914|consen  140 DSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL------LLSGS  212 (390)
T ss_pred             cccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce------eeecC
Confidence            5433 3456778889999999999999999999999999988877777788777777899999988876      79999


Q ss_pred             CccEEEEEeCCCceeeeeec
Q 016257          222 DKALLAVYDISTWNKIGHKR  241 (392)
Q Consensus       222 ~d~~i~v~d~~~~~~~~~~~  241 (392)
                      .|+++++||+++++.+..+.
T Consensus       213 GD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  213 GDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             CCCcEEEEecccCCcccccc
Confidence            99999999999998875443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.25  E-value=2.9e-10  Score=91.89  Aligned_cols=249  Identities=14%  Similarity=0.132  Sum_probs=162.3

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCc-cceeecc----cc-----CCCCCCCCCeEEEEecCCCC--EEEEE
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA-TDINLLA----KK-----MPPLQDAGPQKCLSFSVDGS--RFAAG  130 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~----~~-----~~~~~~~~~v~~~~~s~~~~--~l~~~  130 (392)
                      .+.|+++.|...|.+|++|...|+|.+|.-+... +..++..    ..     +..++-...|..+.|..++.  .++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            5679999999999999999999999999865543 2222111    10     11122245688888877543  46666


Q ss_pred             eCCCcEEEEeCCCCce-------------------ee--------c---------------c-cCCCCcEEEEEecCCCC
Q 016257          131 GVDGHLRIMHWPSLRI-------------------IL--------D---------------E-PKAHKSVLDMDFSLDSE  167 (392)
Q Consensus       131 ~~dg~i~i~d~~~~~~-------------------~~--------~---------------~-~~~~~~i~~i~~~~~~~  167 (392)
                      +.|.+|++|.+.....                   +.        +               . ..|.-.|.++.|+.|..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            7899999997643210                   00        0               0 11222577899998888


Q ss_pred             eEEEEcCCCcEEEEECCCCeeeEE---EecCC----CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee----
Q 016257          168 FLATTSTDGSARIWKTEDGVAWTF---LTRNS----DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK----  236 (392)
Q Consensus       168 ~l~~~~~d~~i~vwd~~~~~~~~~---~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~----  236 (392)
                      .++++. |=.|.+|+++.......   +..+.    ...|++..|+|.....    +.-++..|.|++-|++....    
T Consensus       186 t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~----fmYSsSkG~Ikl~DlRq~alcdn~  260 (460)
T COG5170         186 TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNV----FMYSSSKGEIKLNDLRQSALCDNS  260 (460)
T ss_pred             eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcce----EEEecCCCcEEehhhhhhhhccCc
Confidence            887764 67899999874322222   22221    1357888999987653    46677789999999984321    


Q ss_pred             --eee----------ecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCcee-eeeeecccc-----------Ccce-
Q 016257          237 --IGH----------KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI-NHWSKRLHL-----------GTSI-  291 (392)
Q Consensus       237 --~~~----------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~-----------~~~i-  291 (392)
                        +..          +...-..|..+.|+++|+++++-.. -+|+|||.+..+. +..+ ..|.           ...| 
T Consensus       261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi-~~h~~l~~~l~d~YEnDaif  338 (460)
T COG5170         261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI-PMHCDLMDELNDVYENDAIF  338 (460)
T ss_pred             hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceee-chHHHHHHHHHhhhhcccee
Confidence              100          1112356888999999999998765 5799999986543 3333 2220           1223 


Q ss_pred             --EEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          292 --ALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       292 --~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                        ..+.||-|.+.+++|+..+..-++-..
T Consensus       339 dkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         339 DKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             eeEEEEecCCcccccccccccceeeeccc
Confidence              357888899999999999888888644

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.25  E-value=1.2e-08  Score=101.47  Aligned_cols=209  Identities=13%  Similarity=0.054  Sum_probs=136.1

Q ss_pred             CCeeEEEEcCCCCeEEEEe-CCCeEEEEEEeCCccceeeccccCC----------CCCCCCCeEEEEecC-CCCEEEEEe
Q 016257           64 GDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMP----------PLQDAGPQKCLSFSV-DGSRFAAGG  131 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~s~-~~~~l~~~~  131 (392)
                      ..+..++++++++.|+++. .++.|+++|..++.. ..+......          ....-.....++++| ++..+++.+
T Consensus       624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~  702 (1057)
T PLN02919        624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA  702 (1057)
T ss_pred             CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence            3578999999888766654 456789998866542 222110000          000012346899999 555666667


Q ss_pred             CCCcEEEEeCCCCceeecc--------cC------CCCcEEEEEecCCCCeE-EEEcCCCcEEEEECCCCeeeEEEec--
Q 016257          132 VDGHLRIMHWPSLRIILDE--------PK------AHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTR--  194 (392)
Q Consensus       132 ~dg~i~i~d~~~~~~~~~~--------~~------~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~--  194 (392)
                      .++.|++||..++......        .+      .-.....++++|+++.| ++-+.++.|++||++++........  
T Consensus       703 ~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~  782 (1057)
T PLN02919        703 GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP  782 (1057)
T ss_pred             CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc
Confidence            7889999998776542110        00      01245679999999854 4556678999999987653211100  


Q ss_pred             ----------CC--------CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec-------------cc
Q 016257          195 ----------NS--------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-------------LL  243 (392)
Q Consensus       195 ----------~~--------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-------------~~  243 (392)
                                ..        -.....++++++|..     .++...++.|++||..++.......             ..
T Consensus       783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~L-----YVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~  857 (1057)
T PLN02919        783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQI-----YVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQ  857 (1057)
T ss_pred             ccCcccccccCCCCchhhhhccCCceeeEeCCCcE-----EEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccc
Confidence                      00        012468899999874     5777889999999998765542211             11


Q ss_pred             CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCcee
Q 016257          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI  278 (392)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  278 (392)
                      -.....++++++|+.+++-+.++.|++||+.+++.
T Consensus       858 l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        858 LSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            12467899999999888888899999999998765

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.23  E-value=2.3e-08  Score=89.55  Aligned_cols=267  Identities=11%  Similarity=0.048  Sum_probs=166.3

Q ss_pred             CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCC
Q 016257           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (392)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  153 (392)
                      .+..+++++.++.+..+|..+++...+......    ..   ....  .++..+++++.++.+..+|.++++.+.+....
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~----~~---~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~  134 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDER----LS---GGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS  134 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCC----cc---cceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC
Confidence            356888888899999999988876554432210    00   1122  24668888889999999999999887654432


Q ss_pred             CCcEEE-EEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcc----eEEEEecCCCCcceEEEEEEeCCccEEEE
Q 016257          154 HKSVLD-MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK----IELCRFSKDGTKPFLFCTVQRGDKALLAV  228 (392)
Q Consensus       154 ~~~i~~-i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~d~~i~v  228 (392)
                       ..+.+ ...  .+..++.++.++.++.+|.++++.+..........    ....... ++ .     ++.+..++.+..
T Consensus       135 -~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~-~-----v~~~~~~g~v~a  204 (377)
T TIGR03300       135 -SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG-G-----VLVGFAGGKLVA  204 (377)
T ss_pred             -ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC-E-----EEEECCCCEEEE
Confidence             22221 111  34567778889999999999998876664332100    0111111 22 2     466777889999


Q ss_pred             EeCCCceeeeeecccC----CC---cEEEEECC--CCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeC
Q 016257          229 YDISTWNKIGHKRLLR----KP---ASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (392)
Q Consensus       229 ~d~~~~~~~~~~~~~~----~~---v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  299 (392)
                      +|.++++.+-......    ..   ...+.-+|  .+..+++++.+|.++.+|.++++..-....   . ....+.  .+
T Consensus       205 ld~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~---~-~~~~p~--~~  278 (377)
T TIGR03300       205 LDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA---S-SYQGPA--VD  278 (377)
T ss_pred             EEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc---C-CccCce--Ee
Confidence            9999887653322110    00   00011111  356788888899999999999987654321   1 122222  24


Q ss_pred             CCeEEEEeCCCeEEEEEeecCccccceeeee----eeeeeeeeceEEEEeeecceeeeecccccccccCCCC
Q 016257          300 QRVVLTASKEWGAMITKLTVPADWKEWQIYS----LLLALFLASAVVFYIFFENSDSFWNFPVARNQHGGPK  367 (392)
Q Consensus       300 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~p~  367 (392)
                      +..++.++.||.+..++...++.  .|....    ...........++.+..++.++++|..+|+.+...+.
T Consensus       279 ~~~vyv~~~~G~l~~~d~~tG~~--~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~  348 (377)
T TIGR03300       279 DNRLYVTDADGVVVALDRRSGSE--LWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKT  348 (377)
T ss_pred             CCEEEEECCCCeEEEEECCCCcE--EEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence            56788888999999999876543  332210    0111123455777778899999999999987765543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.22  E-value=1.5e-10  Score=103.84  Aligned_cols=249  Identities=11%  Similarity=0.074  Sum_probs=167.7

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC-eEEEEeCC
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCSTTN   84 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~~~~~d   84 (392)
                      .|-.+.|+|...+..-++..       +..+-.+|.+....     .....+.+.+|...|+.+-|+|... .+++++-|
T Consensus        69 ~vad~qws~h~a~~~wiVst-------s~qkaiiwnlA~ss-----~~aIef~lhghsraitd~n~~~q~pdVlatcsvd  136 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVST-------SNQKAIIWNLAKSS-----SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVD  136 (1081)
T ss_pred             hhcceecccCCCCceeEEec-------CcchhhhhhhhcCC-----ccceEEEEecCccceeccccCCCCCcceeecccc
Confidence            46788999988765556632       33334488876433     5567788999999999999999654 78899999


Q ss_pred             CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-eeecccCCCCcEEEEEec
Q 016257           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~  163 (392)
                      -.+..||+.+..........      -......++|+-....+.+.+....|++||.+.+. +...+.++...|..++|.
T Consensus       137 t~vh~wd~rSp~~p~ys~~~------w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fn  210 (1081)
T KOG0309|consen  137 TYVHAWDMRSPHRPFYSTSS------WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFN  210 (1081)
T ss_pred             ccceeeeccCCCcceeeeec------ccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHh
Confidence            99999999877543222111      12355778898743344444567789999998765 444556666688888887


Q ss_pred             C-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC---------
Q 016257          164 L-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST---------  233 (392)
Q Consensus       164 ~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~---------  233 (392)
                      . ....+.+++.|++|+.||................++..-.+.|-|...+   +.-.-.+..+.+++.+.         
T Consensus       211 r~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~---~mp~~G~n~v~~~~c~n~d~e~n~~~  287 (1081)
T KOG0309|consen  211 RFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC---IMPMVGGNMVPQLRCENSDLEWNVFD  287 (1081)
T ss_pred             hhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE---eccccCCeeeeeccccchhhhhcccc
Confidence            6 3346888999999999998765433333333455777778888776522   11111222444444332         


Q ss_pred             -ceeeeeecccCCCcEEEEECCC----------CCEEEEEeCCCcEEEEecCC
Q 016257          234 -WNKIGHKRLLRKPASVLSISLD----------GKYLAMGSKDGDICVVDVKK  275 (392)
Q Consensus       234 -~~~~~~~~~~~~~v~~~~~s~~----------~~~l~~~~~dg~i~iwd~~~  275 (392)
                       .+++..+.+|...|....|-..          .-.|++-+.|..+++|-+.+
T Consensus       288 ~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  288 LNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             CCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence             3467788888877766655432          23589999999999997754

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.21  E-value=4.2e-08  Score=81.48  Aligned_cols=228  Identities=16%  Similarity=0.108  Sum_probs=150.6

Q ss_pred             CeeEEEEcC-CCCeEEEEeCCCe-EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC-----CCcEE
Q 016257           65 DPMTIAVNP-SGDDFVCSTTNGG-CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHLR  137 (392)
Q Consensus        65 ~v~~~~~sp-~~~~l~~~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~  137 (392)
                      ....++.+| ....++.+-+-|+ ..+||..+++....+....-.     -.--.-.||+||++|++.-.     .|.|-
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR-----HFyGHg~fs~dG~~LytTEnd~~~g~G~Ig   80 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR-----HFYGHGVFSPDGRLLYTTENDYETGRGVIG   80 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC-----EEecCEEEcCCCCEEEEeccccCCCcEEEE
Confidence            345678888 5556777777665 678999888765554332211     11124689999999998643     48899


Q ss_pred             EEeCC-CCceeecccCCCCcEEEEEecCCCCeEEEEc------------------CCCcEEEEECCCCeeeEEEec---C
Q 016257          138 IMHWP-SLRIILDEPKAHKSVLDMDFSLDSEFLATTS------------------TDGSARIWKTEDGVAWTFLTR---N  195 (392)
Q Consensus       138 i~d~~-~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~------------------~d~~i~vwd~~~~~~~~~~~~---~  195 (392)
                      |||.. +.+.+.++..+--.-..+.+.||++.|+++.                  .+-++...|..+++.+.+...   .
T Consensus        81 Vyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~  160 (305)
T PF07433_consen   81 VYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL  160 (305)
T ss_pred             EEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence            99998 5566666655554667888999998887763                  123566777888887776442   3


Q ss_pred             CCcceEEEEecCCCCcceEEEEEEeCCc-------cEEEEEeCCCceeeee-------ecccCCCcEEEEECCCCCEEEE
Q 016257          196 SDEKIELCRFSKDGTKPFLFCTVQRGDK-------ALLAVYDISTWNKIGH-------KRLLRKPASVLSISLDGKYLAM  261 (392)
Q Consensus       196 ~~~~v~~~~~~~~~~~~~~~~~~~~~~d-------~~i~v~d~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~  261 (392)
                      +...++.+++.++|.-     ++.....       -.+.+++...  .+..       .....+.+-++++++++.++++
T Consensus       161 ~~lSiRHLa~~~~G~V-----~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~  233 (305)
T PF07433_consen  161 HQLSIRHLAVDGDGTV-----AFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV  233 (305)
T ss_pred             cccceeeEEecCCCcE-----EEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEE
Confidence            4447999999999874     1211111       1233333322  1111       1233567889999999988866


Q ss_pred             Ee-CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC
Q 016257          262 GS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE  309 (392)
Q Consensus       262 ~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  309 (392)
                      .+ ..+.+.+||..+++.+....    -..+..++-.+++ ++++.+.-
T Consensus       234 tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG~G  277 (305)
T PF07433_consen  234 TSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-FLVSSGQG  277 (305)
T ss_pred             ECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-eEEeCCCc
Confidence            66 66789999999999887653    3456777776666 55555543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.20  E-value=3e-09  Score=96.23  Aligned_cols=240  Identities=10%  Similarity=0.081  Sum_probs=166.2

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCC------------CEEEEEe
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG------------SRFAAGG  131 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------------~~l~~~~  131 (392)
                      ..-.++.|+|.| +||.|+..- |.+.|..+.+.+..+.       .|...|+.+.|.|..            -.|+++.
T Consensus        16 sN~~A~Dw~~~G-LiAygshsl-V~VVDs~s~q~iqsie-------~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD   86 (1062)
T KOG1912|consen   16 SNRNAADWSPSG-LIAYGSHSL-VSVVDSRSLQLIQSIE-------LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD   86 (1062)
T ss_pred             ccccccccCccc-eEEEecCce-EEEEehhhhhhhhccc-------cCccceeEEEeccCCCchhccCccccceeEEecc
Confidence            346678999887 788876554 8888887776544332       266889999998732            1467777


Q ss_pred             CCCcEEEEeCCCCceeecccCCCCcEEEEEecC---CC-CeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecC
Q 016257          132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL---DS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK  207 (392)
Q Consensus       132 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~---~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  207 (392)
                      ..|.|.+||...+..+..+..+.+++..++|-+   +. ..|++-....++.+|+..+|+........+. ...++.+.|
T Consensus        87 ~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~-iLs~f~~DP  165 (1062)
T KOG1912|consen   87 ISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE-ILSCFRVDP  165 (1062)
T ss_pred             ccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc-ceeeeeeCC
Confidence            889999999998888877777888999999966   33 4566666678999999999988776655443 677788888


Q ss_pred             CCCcceEEEEEEeCCccEEEEEeCCC-------ceeeeeecccCC------------C-------------cEEEEECCC
Q 016257          208 DGTKPFLFCTVQRGDKALLAVYDIST-------WNKIGHKRLLRK------------P-------------ASVLSISLD  255 (392)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~v~d~~~-------~~~~~~~~~~~~------------~-------------v~~~~~s~~  255 (392)
                      -...-    +...+..|.+.+-+.-.       ++..+....|..            .             ...++|+|.
T Consensus       166 fd~rh----~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~  241 (1062)
T KOG1912|consen  166 FDSRH----FCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPH  241 (1062)
T ss_pred             CCcce----EEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChh
Confidence            55432    23334455555554321       111111111110            0             113577887


Q ss_pred             CCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCC--eEEEEeCCCeEEEEEeec
Q 016257          256 GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR--VVLTASKEWGAMITKLTV  319 (392)
Q Consensus       256 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~iw~~~~  319 (392)
                      -+.++.......+.++|++-...+..+.. . .+.+.-+.|-|+++  .|++.-.||.+.+|--+.
T Consensus       242 ~rn~lfi~~prellv~dle~~~~l~vvpi-e-r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  242 WRNILFITFPRELLVFDLEYECCLAVVPI-E-RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hhceEEEEeccceEEEcchhhceeEEEEe-c-cCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            76666666677899999998777766632 2 56677778888765  799999999999998764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.20  E-value=3.8e-08  Score=79.30  Aligned_cols=238  Identities=11%  Similarity=0.060  Sum_probs=134.9

Q ss_pred             EEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceee
Q 016257           69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL  148 (392)
Q Consensus        69 ~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~  148 (392)
                      ++.+++|+.||.. .|..|.|-..++.-...  ..+..........=+-++||||+.+||.+...|+|+++|+..... .
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si--~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f   78 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSI--IGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-F   78 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchhe--eEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-E
Confidence            5667889888875 55556665544331111  010100111223457899999999999999999999999865332 2


Q ss_pred             cccCCC-------CcEEEEEecCC------CCeEEEEcCCCcEEEEECCC-----CeeeEE--EecCCCcceEEEEecCC
Q 016257          149 DEPKAH-------KSVLDMDFSLD------SEFLATTSTDGSARIWKTED-----GVAWTF--LTRNSDEKIELCRFSKD  208 (392)
Q Consensus       149 ~~~~~~-------~~i~~i~~~~~------~~~l~~~~~d~~i~vwd~~~-----~~~~~~--~~~~~~~~v~~~~~~~~  208 (392)
                      .+....       ..|..+.|.+.      ...|++-..+|.++=|-+..     .+....  +..+....|.++.++|.
T Consensus        79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~  158 (282)
T PF15492_consen   79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK  158 (282)
T ss_pred             EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence            222221       35777777542      12466666778877776532     222233  33444557999999999


Q ss_pred             CCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEEC---CCCCEEEEEeCCC------cEEEEecCCceee
Q 016257          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS---LDGKYLAMGSKDG------DICVVDVKKMEIN  279 (392)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~dg------~i~iwd~~~~~~~  279 (392)
                      .+.+    ++.|.....-.           ..+.....+++-..-   |..+. ++...|+      +..+|.+-+.+..
T Consensus       159 h~LL----lVgG~~~~~~~-----------~s~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~f  222 (282)
T PF15492_consen  159 HRLL----LVGGCEQNQDG-----------MSKASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFF  222 (282)
T ss_pred             CCEE----EEeccCCCCCc-----------cccccccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeee
Confidence            8751    23333332100           011112223322221   22111 1222221      1234444333222


Q ss_pred             eeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceee
Q 016257          280 HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI  328 (392)
Q Consensus       280 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  328 (392)
                      ..  .......|..|..||||+.||+...+|.|.+|++........|..
T Consensus       223 s~--~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  223 SR--QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             ec--cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence            11  122267899999999999999999999999999987766666654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.19  E-value=2.9e-08  Score=79.98  Aligned_cols=227  Identities=12%  Similarity=0.092  Sum_probs=127.8

Q ss_pred             CcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCC
Q 016257           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA  112 (392)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  112 (392)
                      .++.|+|-.-..+-....  ..+ ..-+...-.-..++||||+..||.+...|+|+++|+..... ..+.........-.
T Consensus        16 qd~~iEiRsa~Ddf~si~--~kc-qVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~   91 (282)
T PF15492_consen   16 QDQCIEIRSAKDDFSSII--GKC-QVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLS   91 (282)
T ss_pred             eccEEEEEeccCCchhee--EEE-ecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccc
Confidence            355666666554332221  111 11222233567899999999999999999999999986542 22222111112234


Q ss_pred             CCeEEEEecCCC------CEEEEEeCCCcEEEEeCCCC--c---eee--cccCC-CCcEEEEEecCCCCeEEEEcCCCc-
Q 016257          113 GPQKCLSFSVDG------SRFAAGGVDGHLRIMHWPSL--R---IIL--DEPKA-HKSVLDMDFSLDSEFLATTSTDGS-  177 (392)
Q Consensus       113 ~~v~~~~~s~~~------~~l~~~~~dg~i~i~d~~~~--~---~~~--~~~~~-~~~i~~i~~~~~~~~l~~~~~d~~-  177 (392)
                      .+|..+.|.+..      ..|++-..+|.++-|-+..+  +   ...  .+..+ ...|.++.++|..++|++|+.... 
T Consensus        92 ~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~  171 (282)
T PF15492_consen   92 DAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQ  171 (282)
T ss_pred             cceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCC
Confidence            677778775521      24666677888887765322  1   111  22222 348999999999898887764322 


Q ss_pred             ----------EEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCc
Q 016257          178 ----------ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA  247 (392)
Q Consensus       178 ----------i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v  247 (392)
                                +..|.+-++.+           -.-...+.+...     ......   ..++.+-+.+...........|
T Consensus       172 ~~~s~a~~~GLtaWRiL~~~P-----------yyk~v~~~~~~~-----~~~~~~---~~~~~~~~~~~fs~~~~~~d~i  232 (282)
T PF15492_consen  172 DGMSKASSCGLTAWRILSDSP-----------YYKQVTSSEDDI-----TASSKR---RGLLRIPSFKFFSRQGQEQDGI  232 (282)
T ss_pred             CccccccccCceEEEEcCCCC-----------cEEEccccCccc-----cccccc---cceeeccceeeeeccccCCCce
Confidence                      12222211111           111111111110     011111   1233333222222223345688


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee
Q 016257          248 SVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (392)
Q Consensus       248 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  282 (392)
                      ..|..||||..||+...+|.|.+|++.+.+.....
T Consensus       233 ~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  233 FKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             EEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence            99999999999999999999999999987765543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.19  E-value=2.7e-09  Score=84.24  Aligned_cols=211  Identities=12%  Similarity=0.113  Sum_probs=124.2

Q ss_pred             eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 016257            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (392)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~   86 (392)
                      |+.+.+.-+.    .++.|.......+-|+.+.+..++........++..  +..|+++-.+-+.+--++.++++..||.
T Consensus        39 ~~~~~~v~~~----~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~--~a~~sep~p~~~~s~~~t~V~~~~~dg~  112 (319)
T KOG4714|consen   39 LSKVSLSAEY----ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKV--LAKNSEIDPNDACTMTDNRVCIGYADGS  112 (319)
T ss_pred             EEEeechhhh----eeecccchhheeeeccceEEEechhhcccCcCceee--eeccCCCCCcccccccCCceEecCCCce
Confidence            5566666543    233333322233444555555554333333333333  3345554444444556678999999999


Q ss_pred             EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-----CCCcEEEEeCCCCceeecccCCCCcEEEEE
Q 016257           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-----VDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (392)
Q Consensus        87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~  161 (392)
                      +.+++.+.........    + ..|. .-.+.+....++.+.++.     .-+..+.|+++..+........-..|.+++
T Consensus       113 ~~v~s~~~~~~~~~~i----~-~~~~-~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~  186 (319)
T KOG4714|consen  113 LAVFSTDKDLALMSRI----P-SIHS-GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALC  186 (319)
T ss_pred             EEEEechHHHhhhhhc----c-cccc-cccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhh
Confidence            9999886622111110    0 0011 112233333455555432     123456666654433322222334689999


Q ss_pred             ecCCC-CeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257          162 FSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (392)
Q Consensus       162 ~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~  233 (392)
                      -+|.. ..+++|+.||.+.+||.+.......+...++.++..+-|+|.....    ++++++||.+-.||..+
T Consensus       187 ~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~----Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  187 SHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH----LFTCSEDGSLWHWDAST  255 (319)
T ss_pred             CCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh----eeEecCCCcEEEEcCCC
Confidence            99954 5677888999999999998866665555567789999999975432    79999999999999875

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.18  E-value=9.5e-08  Score=80.11  Aligned_cols=218  Identities=14%  Similarity=0.076  Sum_probs=140.7

Q ss_pred             eEEEEcC-CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEec-CCCCEEEEEeCCCcEEEEeCCCC
Q 016257           67 MTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS-VDGSRFAAGGVDGHLRIMHWPSL  144 (392)
Q Consensus        67 ~~~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~  144 (392)
                      .++.|.+ ++.++++-...+.|+.|+..++......         . .....+++. +++ .|+.+... .+.++|..++
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~---------~-~~~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g   70 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID---------L-PGPNGMAFDRPDG-RLYVADSG-GIAVVDPDTG   70 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE---------S-SSEEEEEEECTTS-EEEEEETT-CEEEEETTTT
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe---------c-CCCceEEEEccCC-EEEEEEcC-ceEEEecCCC
Confidence            4678888 5656666667888999988776532211         1 126778887 565 55555544 4566698887


Q ss_pred             ceeecccC-----CCCcEEEEEecCCCCeEEEEcCC--------CcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCc
Q 016257          145 RIILDEPK-----AHKSVLDMDFSLDSEFLATTSTD--------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (392)
Q Consensus       145 ~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~d--------~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (392)
                      +.......     .....+++++.|+|++.++....        |.+..++.. ++....... . .....++|+|+++.
T Consensus        71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~-~~pNGi~~s~dg~~  147 (246)
T PF08450_consen   71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-L-GFPNGIAFSPDGKT  147 (246)
T ss_dssp             EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-E-SSEEEEEEETTSSE
T ss_pred             cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-c-ccccceEECCcchh
Confidence            54322221     23378999999999977765533        457777776 444333332 2 25789999999986


Q ss_pred             ceEEEEEEeCCccEEEEEeCCCcee----eeee---cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec
Q 016257          212 PFLFCTVQRGDKALLAVYDISTWNK----IGHK---RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR  284 (392)
Q Consensus       212 ~~~~~~~~~~~d~~i~v~d~~~~~~----~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  284 (392)
                      +    .++.+..+.|..+++.....    ...+   ....+....+++..+|++.++....+.|.++|.+ ++.+..+..
T Consensus       148 l----yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~  222 (246)
T PF08450_consen  148 L----YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL  222 (246)
T ss_dssp             E----EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-
T ss_pred             e----eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC
Confidence            3    35777888899999863221    1112   2212236789999999988887788999999987 777776643


Q ss_pred             cccCcceEEEEEe-eCCCeEEEE
Q 016257          285 LHLGTSIALVEFC-PTQRVVLTA  306 (392)
Q Consensus       285 ~~~~~~i~~~~~s-~~~~~l~~~  306 (392)
                      .  ...+++++|. ++.+.|+..
T Consensus       223 p--~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  223 P--VPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             S--SSSEEEEEEESTTSSEEEEE
T ss_pred             C--CCCEEEEEEECCCCCEEEEE
Confidence            3  3589999995 565555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.18  E-value=7.8e-10  Score=99.36  Aligned_cols=226  Identities=13%  Similarity=0.137  Sum_probs=156.8

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCC--CEEEEEeCCCcEEEEe
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--SRFAAGGVDGHLRIMH  140 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~d  140 (392)
                      .+.+.++..+|.|+-+|.+++-| +.+.|+...-.........     ..-.|-.+.|+|..  .+-++......-.+|+
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~-----tpw~vad~qws~h~a~~~wiVsts~qkaiiwn   97 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHI-----TPWQVADVQWSPHPAKPYWIVSTSNQKAIIWN   97 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeecc-----CcchhcceecccCCCCceeEEecCcchhhhhh
Confidence            46788999999999999999998 8888887654333222211     12246677888743  3444444556677888


Q ss_pred             CCCC---ceeecccCCCCcEEEEEecCCC-CeEEEEcCCCcEEEEECCCCe-eeEEEecCCCcceEEEEecCCCCcceEE
Q 016257          141 WPSL---RIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (392)
Q Consensus       141 ~~~~---~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (392)
                      +...   ..-..+.+|...|+++.|+|.. ..+++++.|..+..||+++.. ++..+..-+. ....++|+.....    
T Consensus        98 lA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s-~asqVkwnyk~p~----  172 (1081)
T KOG0309|consen   98 LAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS-AASQVKWNYKDPN----  172 (1081)
T ss_pred             hhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc-cCceeeecccCcc----
Confidence            7532   2223345566689999999954 578999999999999999764 3444433333 5678999987665    


Q ss_pred             EEEEeCCccEEEEEeCCCce-eeeeecccCCCcEEEEECCC-CCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEE
Q 016257          216 CTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL  293 (392)
Q Consensus       216 ~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~  293 (392)
                       +.+.+..+.|.+||++.+. ++..+++|-..+..++|..- ...+.+.+.|++|++||.............. ..+|+.
T Consensus       173 -vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt-~~piw~  250 (1081)
T KOG0309|consen  173 -VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT-NFPIWR  250 (1081)
T ss_pred             -hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc-cCccee
Confidence             6777888899999999764 55667777777788877642 3467888999999999987643322221222 667888


Q ss_pred             EEEeeCCC
Q 016257          294 VEFCPTQR  301 (392)
Q Consensus       294 ~~~s~~~~  301 (392)
                      -.+.|-|.
T Consensus       251 ~r~~Pfg~  258 (1081)
T KOG0309|consen  251 GRYLPFGE  258 (1081)
T ss_pred             ccccccCc
Confidence            88888555

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.16  E-value=1e-09  Score=91.83  Aligned_cols=161  Identities=9%  Similarity=0.028  Sum_probs=119.5

Q ss_pred             EEEEEecCCCCeEEEEcCCCcEEEEECCCCee----eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC
Q 016257          157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVA----WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (392)
Q Consensus       157 i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~  232 (392)
                      ...+..++.++++|++..+....+++.+....    .......  ...+++.|..+.....+  .-..++...+.+|...
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~--~~~~ai~~~~~~~sv~v--~dkagD~~~~di~s~~  140 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP--KRPTAISFIREDTSVLV--ADKAGDVYSFDILSAD  140 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc--cCcceeeeeeccceEEE--EeecCCceeeeeeccc
Confidence            44556788888999888888877777765433    2222111  13445555555554221  4455666777888777


Q ss_pred             CceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeE
Q 016257          233 TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGA  312 (392)
Q Consensus       233 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  312 (392)
                      .+.. ..+.+|-.-++.++|+||+++|+++..|..|++-.....-.+..+..+| ..-|..++.-++ +.|+++|.|+++
T Consensus       141 ~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH-~eFVS~isl~~~-~~LlS~sGD~tl  217 (390)
T KOG3914|consen  141 SGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGH-KEFVSTISLTDN-YLLLSGSGDKTL  217 (390)
T ss_pred             ccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcccc-HhheeeeeeccC-ceeeecCCCCcE
Confidence            6433 3556788899999999999999999999999999988877777777889 999999998765 568999999999


Q ss_pred             EEEEeecCcccc
Q 016257          313 MITKLTVPADWK  324 (392)
Q Consensus       313 ~iw~~~~~~~~~  324 (392)
                      ++|++..++.+.
T Consensus       218 r~Wd~~sgk~L~  229 (390)
T KOG3914|consen  218 RLWDITSGKLLD  229 (390)
T ss_pred             EEEecccCCccc
Confidence            999999876655

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=9.6e-10  Score=95.72  Aligned_cols=267  Identities=11%  Similarity=0.107  Sum_probs=172.9

Q ss_pred             CCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCC
Q 016257           31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ  110 (392)
Q Consensus        31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  110 (392)
                      +..|.++++|.+.+++.... +..+..+++.|+.+|.++.|-.+-++++++  ||.|++||.--+..........     
T Consensus       753 ASkDKTVKLWSik~EgD~~~-tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dap-----  824 (1034)
T KOG4190|consen  753 ASKDKTVKLWSIKPEGDEIG-TSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAP-----  824 (1034)
T ss_pred             ccCCceEEEEEeccccCccc-cceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCc-----
Confidence            45688899999998776553 456788899999999999999998888764  6779999987666444332211     


Q ss_pred             CCCCeEEEEecC--CCCEEEEE-eCCCcEEEEeCCCCceeeccc-----CCCCcEEEEEecCCCCeEEEEcCCCcEEEEE
Q 016257          111 DAGPQKCLSFSV--DGSRFAAG-GVDGHLRIMHWPSLRIILDEP-----KAHKSVLDMDFSLDSEFLATTSTDGSARIWK  182 (392)
Q Consensus       111 ~~~~v~~~~~s~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd  182 (392)
                      ..+.+..+.--+  +...++.| +...+|+++|.+..+...+..     ....-+.+++..+.|++++.+-.+|.|.+.|
T Consensus       825 k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LD  904 (1034)
T KOG4190|consen  825 KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILD  904 (1034)
T ss_pred             ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEe
Confidence            122333333333  44445444 678899999998876544332     2334688999999999999999999999999


Q ss_pred             CCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEE-EeCCCceeeeeecccCCCcEEEEECCCCCEEEE
Q 016257          183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAV-YDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (392)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v-~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  261 (392)
                      .++|+.+..+..-.- ....++- |..+.     ++....|..+.+ |-.-.+....+.+....+..-+  -.-|.-|++
T Consensus       905 aR~G~vINswrpmec-dllqlaa-psdq~-----L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~  975 (1034)
T KOG4190|consen  905 ARNGKVINSWRPMEC-DLLQLAA-PSDQA-----LAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVT  975 (1034)
T ss_pred             cCCCceeccCCcccc-hhhhhcC-chhHH-----HHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEE
Confidence            999998887653221 1222222 33332     466666778887 7766554433333322222111  123556677


Q ss_pred             EeCCCcEEEEecC-Cce---eeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEE
Q 016257          262 GSKDGDICVVDVK-KME---INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI  314 (392)
Q Consensus       262 ~~~dg~i~iwd~~-~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  314 (392)
                      ......+.+|--. ...   .+..+......+..++++--|-+.-++.|...|.|.+
T Consensus       976 a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  976 AQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             eccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence            6666667777321 111   1111211222677888998888888888988888875

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.12  E-value=4.6e-08  Score=77.79  Aligned_cols=187  Identities=12%  Similarity=0.065  Sum_probs=126.1

Q ss_pred             eEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC-ceeec-c-cCC
Q 016257           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-RIILD-E-PKA  153 (392)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~-~-~~~  153 (392)
                      .+..++.|.++++.+++.+.........       .-.+.++.+++|++++++.+....|..|.+... +.+.. . ...
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~-------~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t  202 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQ-------NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT  202 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeecc-------ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence            4556688999999998766432222111       123789999999999999999999999998643 32222 1 122


Q ss_pred             CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeee----EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEE
Q 016257          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW----TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (392)
Q Consensus       154 ~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~  229 (392)
                      .+.-.+..|+.....+|++..||++.|||++.....    ..-..++.+.++.+.|++-|..-+   ++.+..-+.+.+.
T Consensus       203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDL---Lf~sEhfs~~hv~  279 (344)
T KOG4532|consen  203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDL---LFISEHFSRVHVV  279 (344)
T ss_pred             CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceE---EEEecCcceEEEE
Confidence            234567889999999999999999999999864322    222345777899999999766433   5666677889999


Q ss_pred             eCCCceeeeeecccC--------CCcEEEEECCCCCEEEEEeCCCcEEEEecC
Q 016257          230 DISTWNKIGHKRLLR--------KPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (392)
Q Consensus       230 d~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  274 (392)
                      |+++.+..+.+...+        ..+....|+.++..+.+.+++ .+.=|++.
T Consensus       280 D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~  331 (344)
T KOG4532|consen  280 DTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNIL  331 (344)
T ss_pred             EcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeecc
Confidence            999887654433221        235566666666655555543 23444443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.07  E-value=1.1e-08  Score=83.05  Aligned_cols=252  Identities=15%  Similarity=0.163  Sum_probs=156.9

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCC------------CCeeEEEE
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE------------GDPMTIAV   71 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~   71 (392)
                      ...|+++.|...+   ..+++|...|.      +.+|.-+...   .........|++|.            ..|..+.|
T Consensus        26 ad~ItaVefd~tg---~YlatGDkgGR------Vvlfer~~s~---~ceykf~teFQshe~EFDYLkSleieEKin~I~w   93 (460)
T COG5170          26 ADKITAVEFDETG---LYLATGDKGGR------VVLFEREKSY---GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEW   93 (460)
T ss_pred             cceeeEEEecccc---ceEeecCCCce------EEEeeccccc---ccchhhhhhhcccccchhhhhhccHHHHhhheee
Confidence            3568899998877   56888876443      5555433211   11122223344543            36888999


Q ss_pred             cCCCC--eEEEEeCCCeEEEEEEeCCccc----------------------eeecc--------------ccCCCCCCCC
Q 016257           72 NPSGD--DFVCSTTNGGCKLFEVYGGATD----------------------INLLA--------------KKMPPLQDAG  113 (392)
Q Consensus        72 sp~~~--~l~~~~~d~~i~iw~~~~~~~~----------------------~~~~~--------------~~~~~~~~~~  113 (392)
                      ..++.  .++..+.|.+|++|.+......                      ..+..              .......|.-
T Consensus        94 ~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~y  173 (460)
T COG5170          94 FDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPY  173 (460)
T ss_pred             ecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccccee
Confidence            76543  4555678999999998765210                      00000              0001123556


Q ss_pred             CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCce---eecccCCC-----CcEEEEEecCCC-CeEEEEcCCCcEEEEECC
Q 016257          114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAH-----KSVLDMDFSLDS-EFLATTSTDGSARIWKTE  184 (392)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~-----~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~  184 (392)
                      .+.++.|+.|...++++ .|-.|.+|+++-...   +..+..+.     .-|++..|+|.. ..+..++..|.|++-|++
T Consensus       174 hiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR  252 (460)
T COG5170         174 HINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR  252 (460)
T ss_pred             EeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence            68899999998888886 478899999864322   22333332     248889999943 456666777999999998


Q ss_pred             CCee------eEEEe---------cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce-eeeeeccc-----
Q 016257          185 DGVA------WTFLT---------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLL-----  243 (392)
Q Consensus       185 ~~~~------~~~~~---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~-----  243 (392)
                      ....      +....         ..--..|..+.|+++|++      +.+..--++++||.+..+ ++.+...|     
T Consensus       253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngry------IlsRdyltvkiwDvnm~k~pikTi~~h~~l~~  326 (460)
T COG5170         253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRY------ILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMD  326 (460)
T ss_pred             hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcE------EEEeccceEEEEecccccCCceeechHHHHHH
Confidence            4321      11110         011125778999999995      555556789999998643 44444322     


Q ss_pred             -------CCCc---EEEEECCCCCEEEEEeCCCcEEEEecC
Q 016257          244 -------RKPA---SVLSISLDGKYLAMGSKDGDICVVDVK  274 (392)
Q Consensus       244 -------~~~v---~~~~~s~~~~~l~~~~~dg~i~iwd~~  274 (392)
                             ...|   ..+.||-|.+.+.+|+..+...||-..
T Consensus       327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             HHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence                   1222   247889899999999998888888643

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.02  E-value=2.7e-10  Score=104.24  Aligned_cols=218  Identities=15%  Similarity=0.146  Sum_probs=156.4

Q ss_pred             EeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC--c
Q 016257           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG--H  135 (392)
Q Consensus        58 ~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~  135 (392)
                      .|..|....+|++|+-+.+.|+.|+..|.|+++++.++......       ..|.++|+.+.-+.||..+++.+.-.  .
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-------ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-------NCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-------cccccccccccccCCcceeeeeccccCch
Confidence            57778899999999999999999999999999999998753332       24889999999999999877765433  4


Q ss_pred             EEEEeCCC-CceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCC---CcceEEEEecCCCCc
Q 016257          136 LRIMHWPS-LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---DEKIELCRFSKDGTK  211 (392)
Q Consensus       136 i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~  211 (392)
                      ..+|++.+ +.....    -..-.++.|+.....-+.|+......+||++++.++.++....   ...-.+..|+|+...
T Consensus      1169 saLW~~~s~~~~~Hs----f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHS----FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred             HHHhccccccCcccc----ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence            67898864 222211    1245678888765555566666778999999998877743221   112367889999884


Q ss_pred             ceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcce
Q 016257          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI  291 (392)
Q Consensus       212 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i  291 (392)
                           ++.   ||  .+||++..+.+..+......+ .=.|+|+|..++.-++     |||+++.+.++....    -.-
T Consensus      1245 -----Iln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~----Ldq 1304 (1516)
T KOG1832|consen 1245 -----ILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPS----LDQ 1304 (1516)
T ss_pred             -----Eee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech-----hhhhHHHHHHhcCcc----ccc
Confidence                 232   33  589999887776655433222 2368999999988765     999999988776542    234


Q ss_pred             EEEEEeeCCCeEEEE
Q 016257          292 ALVEFCPTQRVVLTA  306 (392)
Q Consensus       292 ~~~~~s~~~~~l~~~  306 (392)
                      ..+.|+..|..++..
T Consensus      1305 c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1305 CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             eEEEeccCccchhhh
Confidence            567888888866544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.98  E-value=6.3e-07  Score=80.72  Aligned_cols=273  Identities=12%  Similarity=0.059  Sum_probs=160.5

Q ss_pred             CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEeCCCcEEEEeCCCCceeeccc
Q 016257           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEP  151 (392)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  151 (392)
                      .+..+++++.++.+.-+|..+++...+.........-.......+.-.|  ++..++.++.++.++.+|.++|+.+.+..
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~  147 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK  147 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence            3557777788888999998888766554322100000000000001111  35577888889999999999999876554


Q ss_pred             CCCCcEEE-EEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcc----eEEEEecCCCCcceEEEEEEeCCccEE
Q 016257          152 KAHKSVLD-MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK----IELCRFSKDGTKPFLFCTVQRGDKALL  226 (392)
Q Consensus       152 ~~~~~i~~-i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~d~~i  226 (392)
                      ... .+.+ ...  .+..++.++.++.+..+|.++++.+-.........    ..+.... ++.      ++.+..++.+
T Consensus       148 ~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~------v~~~~~~g~v  217 (394)
T PRK11138        148 VAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FGG------AIVGGDNGRV  217 (394)
T ss_pred             CCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CCE------EEEEcCCCEE
Confidence            332 2221 112  24567778888999999999999877765331100    0111111 122      4566778889


Q ss_pred             EEEeCCCceeeeeecccC----C---CcEEEEECC--CCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEe
Q 016257          227 AVYDISTWNKIGHKRLLR----K---PASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (392)
Q Consensus       227 ~v~d~~~~~~~~~~~~~~----~---~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  297 (392)
                      ..+|..+++.+-......    .   ....+.-+|  .+..+++++.+|.+..+|..+++.+-....   . ....+.  
T Consensus       218 ~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~---~-~~~~~~--  291 (394)
T PRK11138        218 SAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY---G-SVNDFA--  291 (394)
T ss_pred             EEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC---C-CccCcE--
Confidence            999998887653322110    0   011111223  355777778899999999999986544321   1 111222  


Q ss_pred             eCCCeEEEEeCCCeEEEEEeecCccccceeeee----eeeeeeeeceEEEEeeecceeeeecccccccccC
Q 016257          298 PTQRVVLTASKEWGAMITKLTVPADWKEWQIYS----LLLALFLASAVVFYIFFENSDSFWNFPVARNQHG  364 (392)
Q Consensus       298 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~  364 (392)
                      ..+..|+.++.+|.+...+...++.  .|....    .........+.++.+..+|.+...|..+|+.+..
T Consensus       292 ~~~~~vy~~~~~g~l~ald~~tG~~--~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~  360 (394)
T PRK11138        292 VDGGRIYLVDQNDRVYALDTRGGVE--LWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQ  360 (394)
T ss_pred             EECCEEEEEcCCCeEEEEECCCCcE--EEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            2456777788899988888865532  342211    1111123456677777899999999988876543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.97  E-value=2.7e-07  Score=77.05  Aligned_cols=220  Identities=15%  Similarity=0.071  Sum_probs=133.8

Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      +|+|..||..+++...+.....     ......+. ..+++..+++++.++.++.||..+|+.+.+...... +.... .
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~-----~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~   73 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGP-----GIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-V   73 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS-----SCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-E
T ss_pred             CCEEEEEECCCCCEEEEEECCC-----CCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-e
Confidence            5677888877776655543211     01111211 223566788888999999999999998765554222 11111 2


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeeeEEE-ecCCC-c-ceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeee
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGVAWTFL-TRNSD-E-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~-~~~~~-~-~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~  240 (392)
                      .++..+++++.++.++.+|.++++.+... ..... . ..........+..     ++.+..++.|..+|.++++.+-..
T Consensus        74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~l~~~d~~tG~~~w~~  148 (238)
T PF13360_consen   74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDR-----LYVGTSSGKLVALDPKTGKLLWKY  148 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTE-----EEEEETCSEEEEEETTTTEEEEEE
T ss_pred             ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCE-----EEEEeccCcEEEEecCCCcEEEEe
Confidence            23556677778889999999999998874 32211 0 1122222223554     566666899999999999987665


Q ss_pred             cccCCC----------cEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCC
Q 016257          241 RLLRKP----------ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW  310 (392)
Q Consensus       241 ~~~~~~----------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  310 (392)
                      ......          +..-....++ .++.++.++.+.-+|+.+++..- ....  .. +.. ....++..|+.++.++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~--~~-~~~-~~~~~~~~l~~~~~~~  222 (238)
T PF13360_consen  149 PVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPI--SG-IYS-LPSVDGGTLYVTSSDG  222 (238)
T ss_dssp             ESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECS--S--ECE-CEECCCTEEEEEETTT
T ss_pred             ecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecC--CC-ccC-CceeeCCEEEEEeCCC
Confidence            543322          1122222344 77777777764444999999663 2222  22 222 1346777888888999


Q ss_pred             eEEEEEeecCcc
Q 016257          311 GAMITKLTVPAD  322 (392)
Q Consensus       311 ~i~iw~~~~~~~  322 (392)
                      .+..||+.+++.
T Consensus       223 ~l~~~d~~tG~~  234 (238)
T PF13360_consen  223 RLYALDLKTGKV  234 (238)
T ss_dssp             EEEEEETTTTEE
T ss_pred             EEEEEECCCCCE
Confidence            999999987653

...

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.97  E-value=2e-06  Score=72.07  Aligned_cols=186  Identities=13%  Similarity=0.105  Sum_probs=116.0

Q ss_pred             eeEEEEc-CCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC--------CcE
Q 016257           66 PMTIAVN-PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--------GHL  136 (392)
Q Consensus        66 v~~~~~s-p~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i  136 (392)
                      ...+.+. +++ .|+.+...+ +.++|..+++.........  ........+.+++.++|++.++....        |.|
T Consensus        42 ~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~--~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v  117 (246)
T PF08450_consen   42 PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPD--GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSV  117 (246)
T ss_dssp             EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEET--TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEE
T ss_pred             CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccC--CCcccCCCceEEEcCCCCEEEEecCCCccccccccce
Confidence            7788888 565 555555666 6666877765322222110  01123567899999999966665433        456


Q ss_pred             EEEeCCCCceeecccCCCCcEEEEEecCCCCeEE-EEcCCCcEEEEECCCCee----eEEEecCCC--cceEEEEecCCC
Q 016257          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVA----WTFLTRNSD--EKIELCRFSKDG  209 (392)
Q Consensus       137 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~vwd~~~~~~----~~~~~~~~~--~~v~~~~~~~~~  209 (392)
                      ..++.. ++.. .....-.....|+|+|+++.|+ +-+..+.|..+++.....    ...+.....  .....+++..+|
T Consensus       118 ~~~~~~-~~~~-~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G  195 (246)
T PF08450_consen  118 YRIDPD-GKVT-VVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG  195 (246)
T ss_dssp             EEEETT-SEEE-EEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred             EEECCC-CeEE-EEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence            777766 4432 2333344678999999998765 556778899999863221    222221112  247889999999


Q ss_pred             CcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEE-CCCCCEEEEEe
Q 016257          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI-SLDGKYLAMGS  263 (392)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~  263 (392)
                      ..     .++....+.|.++|.+ ++.+..+......+++++| -++.+.|++.+
T Consensus       196 ~l-----~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  196 NL-----WVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             -E-----EEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             CE-----EEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            74     3444467899999988 7777777766568999999 46766665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=3.7e-08  Score=83.85  Aligned_cols=247  Identities=11%  Similarity=0.054  Sum_probs=165.1

Q ss_pred             CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC-CCcEEEEe
Q 016257           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMH  140 (392)
Q Consensus        62 h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d  140 (392)
                      |.+.|+.+.-+ ..+++.+++.||.++.|.-..-. ...+..   ....|.+.+.+++.+-++.++.+.+. |..++++|
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~is-GvEfVK---hFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD   82 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRIS-GVEFVK---HFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD   82 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCcc-ceeehh---hhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence            66777776654 45699999999999999754422 111111   11136678888999999999999777 99999999


Q ss_pred             CCCCceeec--ccCCCCcEEEEEecCC-CC-eEEE-EcCCCcEEEEECCCCe-eeEEEecCCCcceEEEEecCCCCcceE
Q 016257          141 WPSLRIILD--EPKAHKSVLDMDFSLD-SE-FLAT-TSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFL  214 (392)
Q Consensus       141 ~~~~~~~~~--~~~~~~~i~~i~~~~~-~~-~l~~-~~~d~~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (392)
                      +++-..+.-  +....+.+. +..++. .. .++. .-.++.+.++|-.... +...+..-+..+|..+.+++.+..   
T Consensus        83 vEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds---  158 (558)
T KOG0882|consen   83 VENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS---  158 (558)
T ss_pred             eeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc---
Confidence            987654421  111122222 222332 11 3333 3357899999987554 444455556679999999999886   


Q ss_pred             EEEEEeCCccEEEEEeCCC------cee---------eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceee
Q 016257          215 FCTVQRGDKALLAVYDIST------WNK---------IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN  279 (392)
Q Consensus       215 ~~~~~~~~d~~i~v~d~~~------~~~---------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  279 (392)
                        ..+....|.|.-|....      .+.         +..+.......+++.|+|+|..+.+-+.|.+|++++.+++++.
T Consensus       159 --~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  159 --AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             --eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence              67777789999998773      111         1111122456789999999999999999999999999998876


Q ss_pred             eeeecc-------------------------------ccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257          280 HWSKRL-------------------------------HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       280 ~~~~~~-------------------------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      +.+...                               |....-+.+.|...|++|+.++.= .|++.++.+.
T Consensus       237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn  307 (558)
T KOG0882|consen  237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTN  307 (558)
T ss_pred             hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecC
Confidence            554110                               112234567788888999888766 5777777654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.92  E-value=2.1e-06  Score=82.23  Aligned_cols=241  Identities=10%  Similarity=0.089  Sum_probs=151.6

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC-
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW-  141 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~-  141 (392)
                      .+.|.++.|.-+++.++.+..+|.|.+-|.++.....  ...      -...|.+++||||++.++..+..+++.+-.- 
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei--vg~------vd~GI~aaswS~Dee~l~liT~~~tll~mT~~  139 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI--VGN------VDNGISAASWSPDEELLALITGRQTLLFMTKD  139 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceee--eee------ccCceEEEeecCCCcEEEEEeCCcEEEEEecc
Confidence            4689999999999999999999999998877654321  111      2468999999999999998888777766432 


Q ss_pred             ---CCCcee-------------------ecccC---------------------CCCcEEEEEecCCCCeEEEEc----C
Q 016257          142 ---PSLRII-------------------LDEPK---------------------AHKSVLDMDFSLDSEFLATTS----T  174 (392)
Q Consensus       142 ---~~~~~~-------------------~~~~~---------------------~~~~i~~i~~~~~~~~l~~~~----~  174 (392)
                         -..+.+                   ..+.+                     -++.=+.|.|--||+++++..    .
T Consensus       140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~  219 (1265)
T KOG1920|consen  140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET  219 (1265)
T ss_pred             ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence               000000                   01110                     011123589999999998843    2


Q ss_pred             C-CcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc---eeeeeecccCCCcEEE
Q 016257          175 D-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW---NKIGHKRLLRKPASVL  250 (392)
Q Consensus       175 d-~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~v~~~  250 (392)
                      + +.|++||-+ +.. ..........-.+++|-|.|..  +..+-..+.++.|.+|..+..   ............+..+
T Consensus       220 ~~RkirV~drE-g~L-ns~se~~~~l~~~LsWkPsgs~--iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L  295 (1265)
T KOG1920|consen  220 GTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGSL--IAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL  295 (1265)
T ss_pred             CceeEEEeccc-chh-hcccCcccccccceeecCCCCe--EeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence            3 789999976 332 2222223334578999998875  222344456677888876532   2222223333458999


Q ss_pred             EECCCCCEEEE---EeCCCcEEEEecCCceeeeeee-ccccCcceEEEEEeeCCC-eEEEEeCCCeEEEEEee
Q 016257          251 SISLDGKYLAM---GSKDGDICVVDVKKMEINHWSK-RLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLT  318 (392)
Q Consensus       251 ~~s~~~~~l~~---~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~  318 (392)
                      +|+.++..||+   ......|++|-..+........ ... ....  +.|+|... .|..-..+|...++++.
T Consensus       296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~-~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~  365 (1265)
T KOG1920|consen  296 AWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS-QKAL--LMWDPVTEKTLHVLRESGQRLVRDFA  365 (1265)
T ss_pred             eecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecc-cccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence            99999999998   4455569999988754322111 111 1222  88888533 34444466776666654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.91  E-value=3.2e-07  Score=76.59  Aligned_cols=217  Identities=13%  Similarity=0.046  Sum_probs=133.0

Q ss_pred             CCcEEEEeCCCCceeecccCCC--CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCC
Q 016257          133 DGHLRIMHWPSLRIILDEPKAH--KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (392)
Q Consensus       133 dg~i~i~d~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (392)
                      +|.|..+|.++++.+.+..-..  ...... ..+++..+++++.++.+..||..+++.+........  +.......++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~~~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP--ISGAPVVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC--GGSGEEEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc--ccceeeecccc
Confidence            6889999999998876654321  222211 233566788888899999999999998877765322  11112222333


Q ss_pred             cceEEEEEEeCCccEEEEEeCCCceeeeee-cccC---CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccc
Q 016257          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHK-RLLR---KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH  286 (392)
Q Consensus       211 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  286 (392)
                            ++....++.+..+|.++++.+-.. ....   ..........++..++++..++.|..+|+++|+.+-......
T Consensus        79 ------v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~  152 (238)
T PF13360_consen   79 ------VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE  152 (238)
T ss_dssp             ------EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred             ------cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence                  344557779999999999887663 2221   111222333347888888889999999999999876553311


Q ss_pred             cC--cc------eEEEEEeeCCCeEEEEeCCCe-EEEEEeecCccccceeee-eeeee-eeeeceEEEEeeecceeeeec
Q 016257          287 LG--TS------IALVEFCPTQRVVLTASKEWG-AMITKLTVPADWKEWQIY-SLLLA-LFLASAVVFYIFFENSDSFWN  355 (392)
Q Consensus       287 ~~--~~------i~~~~~s~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~d~~i~~W~  355 (392)
                      ..  ..      +..-....++ .++.++.++. +.+ ++..+..  .|... ..... .......++....++.+..||
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~--~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d  228 (238)
T PF13360_consen  153 PRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEK--LWSKPISGIYSLPSVDGGTLYVTSSDGRLYALD  228 (238)
T ss_dssp             T-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEE--EEEECSS-ECECEECCCTEEEEEETTTEEEEEE
T ss_pred             CCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCE--EEEecCCCccCCceeeCCEEEEEeCCCEEEEEE
Confidence            01  11      1122222244 6777777775 444 7766552  35222 11222 234555666666799999999


Q ss_pred             ccccccc
Q 016257          356 FPVARNQ  362 (392)
Q Consensus       356 ~~~~~~~  362 (392)
                      +.+|+.+
T Consensus       229 ~~tG~~~  235 (238)
T PF13360_consen  229 LKTGKVV  235 (238)
T ss_dssp             TTTTEEE
T ss_pred             CCCCCEE
Confidence            9999865

...

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.90  E-value=2.3e-08  Score=79.07  Aligned_cols=147  Identities=13%  Similarity=0.179  Sum_probs=97.3

Q ss_pred             CCCeEEEEcCCCcEEEEECCCCeee-EEEecCCCcceEEEEecCCCCcceEEEEEEeCC------ccEEEEEeCCCceee
Q 016257          165 DSEFLATTSTDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD------KALLAVYDISTWNKI  237 (392)
Q Consensus       165 ~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------d~~i~v~d~~~~~~~  237 (392)
                      .++.++++..||.+.+++.+.-..+ ..+...+.+ -.+.+....++      ++.++.      -+..+.|+++..+..
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~------~i~s~~~g~~n~~d~~~a~~~~p~~t~  172 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGN------SILSGGCGNWNAQDNFYANTLDPIKTL  172 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeeccc------EEecCCcceEeeccceeeecccccccc
Confidence            4567999999999999998752111 111111111 11122222233      122222      234566666644433


Q ss_pred             eeecccCCCcEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeC-CCeEEEEeCCCeEEEE
Q 016257          238 GHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT-QRVVLTASKEWGAMIT  315 (392)
Q Consensus       238 ~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iw  315 (392)
                      ..-......|++++-+|.. ..+++|+.||.+.+||.+....+..+...| +.+|+.+-|+|. +..|+++++||.+--|
T Consensus       173 ~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah-k~~i~eV~FHpk~p~~Lft~sedGslw~w  251 (319)
T KOG4714|consen  173 IPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH-KAEIWEVHFHPKNPEHLFTCSEDGSLWHW  251 (319)
T ss_pred             cccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh-hhhhhheeccCCCchheeEecCCCcEEEE
Confidence            2222223458899999965 567788899999999999988777777899 999999999994 5699999999999999


Q ss_pred             Eeec
Q 016257          316 KLTV  319 (392)
Q Consensus       316 ~~~~  319 (392)
                      +-.+
T Consensus       252 das~  255 (319)
T KOG4714|consen  252 DAST  255 (319)
T ss_pred             cCCC
Confidence            8773

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=7.6e-07  Score=81.51  Aligned_cols=189  Identities=14%  Similarity=0.073  Sum_probs=133.2

Q ss_pred             CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEE
Q 016257          112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF  191 (392)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  191 (392)
                      ...+.|++++  ++.|+.|+.+|.|++++.... . .....|...      ..+|.++++|+.||+|.|-.+-+.+...+
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            3466777775  568999999999999986533 2 223333222      56899999999999999999988887777


Q ss_pred             EecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee--eeeecccCCCcEEEEECCCCCEEEEEeCCCcEE
Q 016257          192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC  269 (392)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  269 (392)
                      +..+  .++.+++++|+-...-.-.+++|+..| +.++.-+-...  ...+....++|.++.|.  |+++|-++.+| |+
T Consensus       109 ~df~--rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~  182 (846)
T KOG2066|consen  109 YDFK--RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VK  182 (846)
T ss_pred             EecC--CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cE
Confidence            6644  379999999981110011168888888 87776542211  11344557899999995  77999998888 99


Q ss_pred             EEecCCceeeeeeecccc----CcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          270 VVDVKKMEINHWSKRLHL----GTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       270 iwd~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      +||..+.+.+..+...+.    ......+.|.++. .|+.|=.| +|+|..++
T Consensus       183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK  233 (846)
T ss_pred             EEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence            999999887776654331    2234567887664 56666666 89999888

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.88  E-value=2.4e-06  Score=76.97  Aligned_cols=258  Identities=8%  Similarity=-0.041  Sum_probs=150.9

Q ss_pred             CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEE-EEecCCCCEEEEEeCCCcEEEEeCCCCceeecccC
Q 016257           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC-LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (392)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  152 (392)
                      ++..++.++.++.++.+|.++++...+....        +.+.+ ...  .+..++.+..++.+..+|.++|+.+.....
T Consensus       119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--------~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~  188 (394)
T PRK11138        119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVA--------GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNL  188 (394)
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCCcccccCC--------CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence            3557778888999999999988866554321        11111 111  244677788899999999999998765543


Q ss_pred             CCCcEE-EEEecC--CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCc---c---eEEEEecC--CCCcceEEEEEEeC
Q 016257          153 AHKSVL-DMDFSL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE---K---IELCRFSK--DGTKPFLFCTVQRG  221 (392)
Q Consensus       153 ~~~~i~-~i~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~---~---v~~~~~~~--~~~~~~~~~~~~~~  221 (392)
                      ...... ...-+|  .+..++.++.++.+..+|.++++.+.........   .   ...+.-+|  .+..     ++.++
T Consensus       189 ~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~-----vy~~~  263 (394)
T PRK11138        189 DVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGV-----VYALA  263 (394)
T ss_pred             CCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCE-----EEEEE
Confidence            211110 000122  2345777788899999999988776544321100   0   01111122  1232     45566


Q ss_pred             CccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCC
Q 016257          222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (392)
Q Consensus       222 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  301 (392)
                      .++.+..+|..+++.+-....  .....+.  ..+..++.++.+|.+..+|.++++.+-...... .....+...  .+.
T Consensus       264 ~~g~l~ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~sp~v--~~g  336 (394)
T PRK11138        264 YNGNLVALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLL-HRLLTAPVL--YNG  336 (394)
T ss_pred             cCCeEEEEECCCCCEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccC-CCcccCCEE--ECC
Confidence            789999999999876543321  1111222  246678888899999999999987654322111 112222333  245


Q ss_pred             eEEEEeCCCeEEEEEeecCccccceeeeee----eeeeeeeceEEEEeeecceeeeec
Q 016257          302 VVLTASKEWGAMITKLTVPADWKEWQIYSL----LLALFLASAVVFYIFFENSDSFWN  355 (392)
Q Consensus       302 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~i~~W~  355 (392)
                      .|+.++.||.+.+.+...++.  .|.....    ...-......++.++.||.++..+
T Consensus       337 ~l~v~~~~G~l~~ld~~tG~~--~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        337 YLVVGDSEGYLHWINREDGRF--VAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAIT  392 (394)
T ss_pred             EEEEEeCCCEEEEEECCCCCE--EEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEe
Confidence            678889999999988776543  3322111    111123455677777788777655

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.87  E-value=8.5e-06  Score=65.06  Aligned_cols=111  Identities=12%  Similarity=0.014  Sum_probs=78.4

Q ss_pred             CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCC
Q 016257           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (392)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  154 (392)
                      ..+++.|+..+.+.--|..+++...+....        ..+.+-+.- -|++++.|...|.+++.+.++|.+...+....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--------~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~   93 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--------VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE   93 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC--------ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh
Confidence            347778888888888888887755443321        222222221 46789999999999999999997766554333


Q ss_pred             CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec
Q 016257          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR  194 (392)
Q Consensus       155 ~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  194 (392)
                      .-=......+++..+..++.|++.+..|.++..++...+.
T Consensus        94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen   94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             hhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence            2112234577899999999999999999998888776543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.86  E-value=6e-06  Score=79.23  Aligned_cols=204  Identities=13%  Similarity=0.068  Sum_probs=133.4

Q ss_pred             CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEEC----CC-
Q 016257          111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT----ED-  185 (392)
Q Consensus       111 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~----~~-  185 (392)
                      ....|.++.|..++..++.+...|.|.+-|.++.... ....-...|.+++|+||++.++..+..+++.+-+-    -. 
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E  145 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE  145 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence            3468999999999999999999999999988776543 22233458999999999999998887777655331    11 


Q ss_pred             ------------------CeeeEEEecC--------------------CCcceEEEEecCCCCcceEEEEEEeCCc-cEE
Q 016257          186 ------------------GVAWTFLTRN--------------------SDEKIELCRFSKDGTKPFLFCTVQRGDK-ALL  226 (392)
Q Consensus       186 ------------------~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~d-~~i  226 (392)
                                        |+....+.+.                    ....-.++.|--||++.... .+....+ ..|
T Consensus       146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs-~~~~~~~~Rki  224 (1265)
T KOG1920|consen  146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVS-FVESETGTRKI  224 (1265)
T ss_pred             cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEE-EEeccCCceeE
Confidence                              1111111100                    00122358899999863222 2223334 899


Q ss_pred             EEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEe---CCCcEEEEecCCcee---eeeeeccccCcceEEEEEeeCC
Q 016257          227 AVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS---KDGDICVVDVKKMEI---NHWSKRLHLGTSIALVEFCPTQ  300 (392)
Q Consensus       227 ~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~---~~~~~~~~~~~~i~~~~~s~~~  300 (392)
                      ++||.+ +..-..-....+.-.+++|-|.|..+++-.   .|+.|.+|.-.....   .... ... ..++..++|+.++
T Consensus       225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~-p~d-e~~ve~L~Wns~s  301 (1265)
T KOG1920|consen  225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPF-PLD-EKEVEELAWNSNS  301 (1265)
T ss_pred             EEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCC-ccc-ccchheeeecCCC
Confidence            999988 433322233334456899999999998753   456799998654321   1111 112 4459999999999


Q ss_pred             CeEEE---EeCCCeEEEEEeec
Q 016257          301 RVVLT---ASKEWGAMITKLTV  319 (392)
Q Consensus       301 ~~l~~---~~~dg~i~iw~~~~  319 (392)
                      ..|++   ......|++|.+..
T Consensus       302 diLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  302 DILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             CceeeeecccccceEEEEEecC
Confidence            98887   44455699998764

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.84  E-value=2.2e-08  Score=82.35  Aligned_cols=150  Identities=9%  Similarity=0.094  Sum_probs=109.0

Q ss_pred             EEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC----ceeecccCCC
Q 016257           79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL----RIILDEPKAH  154 (392)
Q Consensus        79 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~  154 (392)
                      ++.+.+-.+.+-|++++..         ..+...+.|.++.|...++++..|..+|.|..+|++..    .......-|.
T Consensus       228 fs~G~sqqv~L~nvetg~~---------qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~  298 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ---------QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD  298 (425)
T ss_pred             ecccccceeEEEEeecccc---------cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC
Confidence            3344555588888888742         12224578899999998899999999999999999865    2233334566


Q ss_pred             CcEEEEEecC-CCCeEEEEcCCCcEEEEECCCCee---eEEEecCCCcceE-EEEecCCCCcceEEEEEEeCCccEEEEE
Q 016257          155 KSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEKIE-LCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (392)
Q Consensus       155 ~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~---~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~d~~i~v~  229 (392)
                      ..|+++..-. ++.+|++.+.+|+|++||++.-++   +.+..+|.+..-. -+-..+....     ++++++|...++|
T Consensus       299 Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~-----I~s~GdDcytRiW  373 (425)
T KOG2695|consen  299 SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGS-----IFSVGDDCYTRIW  373 (425)
T ss_pred             cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccce-----EEEccCeeEEEEE
Confidence            7888887766 688999999999999999997766   7777666442111 1223333333     6789999999999


Q ss_pred             eCCCceeeeeecc
Q 016257          230 DISTWNKIGHKRL  242 (392)
Q Consensus       230 d~~~~~~~~~~~~  242 (392)
                      .++.+..+.++..
T Consensus       374 sl~~ghLl~tipf  386 (425)
T KOG2695|consen  374 SLDSGHLLCTIPF  386 (425)
T ss_pred             ecccCceeeccCC
Confidence            9999988766654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.82  E-value=2.3e-08  Score=82.29  Aligned_cols=155  Identities=8%  Similarity=0.042  Sum_probs=115.7

Q ss_pred             EecCC--CCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCC-----eeeEE
Q 016257          119 SFSVD--GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-----VAWTF  191 (392)
Q Consensus       119 ~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-----~~~~~  191 (392)
                      +|+-+  |-. ++.+.+-.+-+-|++++...  .....+.|.++.|...++++..|..+|.|..+|++.+     .+...
T Consensus       218 awSlni~gyh-fs~G~sqqv~L~nvetg~~q--sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r  294 (425)
T KOG2695|consen  218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ--SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR  294 (425)
T ss_pred             hhhhccceee-ecccccceeEEEEeeccccc--ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence            55542  333 44455777888898887543  2335567999999998999999999999999999865     23344


Q ss_pred             EecCCCcceEEEEecC-CCCcceEEEEEEeCCccEEEEEeCCCcee---eeeecccCCCcEE--EEECCCCCEEEEEeCC
Q 016257          192 LTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLRKPASV--LSISLDGKYLAMGSKD  265 (392)
Q Consensus       192 ~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~v~~--~~~s~~~~~l~~~~~d  265 (392)
                      +.  |+..|+++..-. +++.     +++++.+|.|++||++.-++   +.+..+|-..-.-  +-..+....+++++.|
T Consensus       295 ly--h~Ssvtslq~Lq~s~q~-----LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD  367 (425)
T KOG2695|consen  295 LY--HDSSVTSLQILQFSQQK-----LMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD  367 (425)
T ss_pred             EE--cCcchhhhhhhccccce-----EeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe
Confidence            43  455788887766 5555     78999999999999997666   7777777543332  3445667788889999


Q ss_pred             CcEEEEecCCceeeeeee
Q 016257          266 GDICVVDVKKMEINHWSK  283 (392)
Q Consensus       266 g~i~iwd~~~~~~~~~~~  283 (392)
                      ...+||.++.+.++..++
T Consensus       368 cytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  368 CYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             eEEEEEecccCceeeccC
Confidence            999999999999887764

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.81  E-value=1e-05  Score=67.58  Aligned_cols=204  Identities=12%  Similarity=0.018  Sum_probs=136.2

Q ss_pred             CCeEEEEecC-CCCEEEEEeCCCc-EEEEeCCCCceeecccCCCCc--EEEEEecCCCCeEEEEcC-----CCcEEEEEC
Q 016257          113 GPQKCLSFSV-DGSRFAAGGVDGH-LRIMHWPSLRIILDEPKAHKS--VLDMDFSLDSEFLATTST-----DGSARIWKT  183 (392)
Q Consensus       113 ~~v~~~~~s~-~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~-----d~~i~vwd~  183 (392)
                      .....++.+| .+..++.+-.-|+ ..+||.++++....+....+.  .-.-.||+||++|++.-.     .|.|-|||.
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence            3456788899 5666777777665 678999999887666554442  235679999999998643     478999999


Q ss_pred             C-CCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeC----------------CccEEEEEeCCCceeeeeec----c
Q 016257          184 E-DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG----------------DKALLAVYDISTWNKIGHKR----L  242 (392)
Q Consensus       184 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----------------~d~~i~v~d~~~~~~~~~~~----~  242 (392)
                      + .-+.+..+..+.- ....+.+.||++.+.   ++.++                .+..+...|.++++.+.+..    .
T Consensus        85 ~~~~~ri~E~~s~GI-GPHel~l~pDG~tLv---VANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~  160 (305)
T PF07433_consen   85 ARGYRRIGEFPSHGI-GPHELLLMPDGETLV---VANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL  160 (305)
T ss_pred             cCCcEEEeEecCCCc-ChhhEEEcCCCCEEE---EEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence            8 4566666665433 356788999997532   23332                23456677788888776643    3


Q ss_pred             cCCCcEEEEECCCCCEEEEEeCCCc-------EEEEecCCceeeeeeec-----cccCcceEEEEEeeCCCeEEEEe-CC
Q 016257          243 LRKPASVLSISLDGKYLAMGSKDGD-------ICVVDVKKMEINHWSKR-----LHLGTSIALVEFCPTQRVVLTAS-KE  309 (392)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~~-----~~~~~~i~~~~~s~~~~~l~~~~-~d  309 (392)
                      |...++-+++.++|..++..-..|.       |-+++...  .+..+..     ......+-++++++++.++++.+ .-
T Consensus       161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG  238 (305)
T PF07433_consen  161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG  238 (305)
T ss_pred             cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence            6678999999999877665443332       34443332  1221110     01156899999999998775554 67


Q ss_pred             CeEEEEEeecCcc
Q 016257          310 WGAMITKLTVPAD  322 (392)
Q Consensus       310 g~i~iw~~~~~~~  322 (392)
                      |.+.+||.....-
T Consensus       239 g~~~~~d~~tg~~  251 (305)
T PF07433_consen  239 GRVAVWDAATGRL  251 (305)
T ss_pred             CEEEEEECCCCCE
Confidence            8999998876644

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.81  E-value=1.3e-05  Score=69.16  Aligned_cols=286  Identities=12%  Similarity=0.107  Sum_probs=138.2

Q ss_pred             cCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCC-CCeeEEEEcCCCCeEEEEeCCCeEEE
Q 016257           11 SWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVCSTTNGGCKL   89 (392)
Q Consensus        11 ~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~l~~~~~d~~i~i   89 (392)
                      +|.+++.++.  ..+.      .++.-++|.++..+...       .+|.... .......++|+++.++.......|.-
T Consensus        42 ~ft~dG~kll--F~s~------~dg~~nly~lDL~t~~i-------~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~  106 (386)
T PF14583_consen   42 CFTDDGRKLL--FASD------FDGNRNLYLLDLATGEI-------TQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRR  106 (386)
T ss_dssp             -B-TTS-EEE--EEE-------TTSS-EEEEEETTT-EE-------EE---SS-B-TTT-EE-TTSSEEEEEETTTEEEE
T ss_pred             CcCCCCCEEE--EEec------cCCCcceEEEEcccCEE-------EECccCCCCCccceEEecCCCeEEEEECCCeEEE
Confidence            5777876633  2222      25556788888665433       2233322 22335667888888877666667888


Q ss_pred             EEEeCCccceeeccccCCCCCCCCCeEEEEec--CCCCEEEEEe----------------------CCCcEEEEeCCCCc
Q 016257           90 FEVYGGATDINLLAKKMPPLQDAGPQKCLSFS--VDGSRFAAGG----------------------VDGHLRIMHWPSLR  145 (392)
Q Consensus        90 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~----------------------~dg~i~i~d~~~~~  145 (392)
                      .|+.+.+.......       ....+-...|.  .|+.+++-.-                      ....|.-.|+.+|+
T Consensus       107 vdL~T~e~~~vy~~-------p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~  179 (386)
T PF14583_consen  107 VDLDTLEERVVYEV-------PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE  179 (386)
T ss_dssp             EETTT--EEEEEE---------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--
T ss_pred             EECCcCcEEEEEEC-------CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc
Confidence            88877653222211       12233335553  3565544321                      11235556777776


Q ss_pred             eeecccCCCCcEEEEEecCCC-CeEEEEcC---CCc-EEEEECCC-CeeeEEEec-CCCcceEEEEecCCCCcceEEEEE
Q 016257          146 IILDEPKAHKSVLDMDFSLDS-EFLATTST---DGS-ARIWKTED-GVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       146 ~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~---d~~-i~vwd~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~  218 (392)
                      ... +.....-+..+.|+|.. .+|+.|-+   +.. -+||-+++ +.....+.. ...+.+..=-|.|||..+++....
T Consensus       180 ~~~-v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~  258 (386)
T PF14583_consen  180 RKV-VFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYT  258 (386)
T ss_dssp             EEE-EEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEE
T ss_pred             eeE-EEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeec
Confidence            543 33344567889999944 45555543   221 25565543 333333322 223456667899999986655444


Q ss_pred             EeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCC----------------cEEEEecCCceeeeee
Q 016257          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG----------------DICVVDVKKMEINHWS  282 (392)
Q Consensus       219 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----------------~i~iwd~~~~~~~~~~  282 (392)
                      .++.+..|.-+|+.+++.......  ....-+..++||++++-=+.|.                -|++++++.+......
T Consensus       259 ~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~  336 (386)
T PF14583_consen  259 PGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLA  336 (386)
T ss_dssp             TTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeee
Confidence            566677899999998765432222  2344566688999887544432                4667788776643322


Q ss_pred             e--------ccccCcceEEEEEeeCCCeEE-EEeCCCeEEEEEeecCc
Q 016257          283 K--------RLHLGTSIALVEFCPTQRVVL-TASKEWGAMITKLTVPA  321 (392)
Q Consensus       283 ~--------~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~  321 (392)
                      .        .++..-.=..+.|+|||++++ ++...|...||-+..+.
T Consensus       337 ~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~~  384 (386)
T PF14583_consen  337 RHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIPD  384 (386)
T ss_dssp             E-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE--C
T ss_pred             eccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeCcc
Confidence            1        111011235689999999654 56678888888877654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.80  E-value=2.8e-08  Score=56.55  Aligned_cols=37  Identities=16%  Similarity=0.378  Sum_probs=34.8

Q ss_pred             eEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEE
Q 016257           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFE   91 (392)
Q Consensus        55 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~   91 (392)
                      +...+++|.+.|++++|+|++++|++++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4567899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=4.2e-07  Score=76.56  Aligned_cols=243  Identities=10%  Similarity=0.032  Sum_probs=139.4

Q ss_pred             EeeCCCCCeeEEEEcCCCC-eEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCc
Q 016257           58 VFDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGH  135 (392)
Q Consensus        58 ~~~~h~~~v~~~~~sp~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~  135 (392)
                      .+.+|...|..++|||..+ ++..++.+..|+|.|+++.........        ...+++++|.-| .++|+.|..+|.
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a--------~~~~wSC~wDlde~h~IYaGl~nG~  259 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA--------YNQIWSCCWDLDERHVIYAGLQNGM  259 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec--------cCCceeeeeccCCcceeEEeccCce
Confidence            4667788999999999877 778889999999999998875544432        368899999875 457888889999


Q ss_pred             EEEEeCCCCceeecccCC---CCcEEEEEec------CCCCeEEEEcCCCcEEEEECCC--CeeeEEEecCCCcceEEEE
Q 016257          136 LRIMHWPSLRIILDEPKA---HKSVLDMDFS------LDSEFLATTSTDGSARIWKTED--GVAWTFLTRNSDEKIELCR  204 (392)
Q Consensus       136 i~i~d~~~~~~~~~~~~~---~~~i~~i~~~------~~~~~l~~~~~d~~i~vwd~~~--~~~~~~~~~~~~~~v~~~~  204 (392)
                      |.+||++..+-.......   ..+|..++.-      +.+.+++....+  ...|++.-  +.....+.....+...++.
T Consensus       260 VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismq  337 (463)
T KOG1645|consen  260 VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQ  337 (463)
T ss_pred             EEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeee
Confidence            999999865543222221   1245444432      234444444432  45565532  2222333333334555566


Q ss_pred             ecCCCCcceEEEEEEeCCc------cEEEE-EeCCCceeeeee-ccc-CCC------cEEEEECCCCCEEE-EEeCCCcE
Q 016257          205 FSKDGTKPFLFCTVQRGDK------ALLAV-YDISTWNKIGHK-RLL-RKP------ASVLSISLDGKYLA-MGSKDGDI  268 (392)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~d------~~i~v-~d~~~~~~~~~~-~~~-~~~------v~~~~~s~~~~~l~-~~~~dg~i  268 (392)
                      ..+..++.    +++.-.+      ..+-. -|.+.+.++... ..+ +..      -..+--.++.++++ +|...+.+
T Consensus       338 y~~~snh~----l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~l  413 (463)
T KOG1645|consen  338 YHGVSNHL----LLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNEL  413 (463)
T ss_pred             ecCccceE----EEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCccee
Confidence            66554542    1221110      00111 112222222111 111 000      01111234555554 44455789


Q ss_pred             EEEecCCceeeeeeeccccCcceEEEEEee-CCC-eEEEEeCCCeEEEEEee
Q 016257          269 CVVDVKKMEINHWSKRLHLGTSIALVEFCP-TQR-VVLTASKEWGAMITKLT  318 (392)
Q Consensus       269 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~-~l~~~~~dg~i~iw~~~  318 (392)
                      .+||..+.+..+.+..   ..+|.+++... ++. +|++-. |..++|++.+
T Consensus       414 il~D~~s~evvQ~l~~---~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  414 ILQDPHSFEVVQTLAL---SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             EEeccchhheeeeccc---CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence            9999999998887643   56888877554 333 555555 5588888765

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.77  E-value=6.8e-06  Score=72.71  Aligned_cols=237  Identities=15%  Similarity=0.135  Sum_probs=130.7

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCC----C-------CCCCCeEEEEecCCCCEEEEEe
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP----L-------QDAGPQKCLSFSVDGSRFAAGG  131 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~----~-------~~~~~v~~~~~s~~~~~l~~~~  131 (392)
                      ...+....|||+|+.++... ++.|.+.+..++... .+.......    .       +--+.-..+.||||+++|+...
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~-~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~  119 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET-QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR  119 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE-ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE-EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence            56789999999999999875 567999987665322 111111000    0       0012346789999999988653


Q ss_pred             CC-C-----------------------------------cEEEEeCCCCceee-ccc----CCCCcEEEEEecCCCCeEE
Q 016257          132 VD-G-----------------------------------HLRIMHWPSLRIIL-DEP----KAHKSVLDMDFSLDSEFLA  170 (392)
Q Consensus       132 ~d-g-----------------------------------~i~i~d~~~~~~~~-~~~----~~~~~i~~i~~~~~~~~l~  170 (392)
                      .| .                                   .+.++|+++++... ...    .....+..+.|.++++.|+
T Consensus       120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~  199 (353)
T PF00930_consen  120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW  199 (353)
T ss_dssp             EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred             ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence            22 1                                   13345555554321 111    1223588899999988444


Q ss_pred             EE--cCCC---cEEEEECCCCeeeEEEecCCCcce---EEEEec-CCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec
Q 016257          171 TT--STDG---SARIWKTEDGVAWTFLTRNSDEKI---ELCRFS-KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (392)
Q Consensus       171 ~~--~~d~---~i~vwd~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~  241 (392)
                      ..  +++.   .+.++|..+++............+   ....|. +++...+ . +.....-..|.+++...+... .+.
T Consensus       200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l-~-~s~~~G~~hly~~~~~~~~~~-~lT  276 (353)
T PF00930_consen  200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFL-W-ISERDGYRHLYLYDLDGGKPR-QLT  276 (353)
T ss_dssp             EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEE-E-EEETTSSEEEEEEETTSSEEE-ESS
T ss_pred             EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEE-E-EEEcCCCcEEEEEccccccee-ccc
Confidence            33  3332   367778877655444433333333   245554 6666522 1 222333456777788776644 444


Q ss_pred             ccCCCcEE-EEECCCCCEEE-EEeCC----CcEEEEecC-CceeeeeeeccccCcceEEEEEeeCCCeEEEEe
Q 016257          242 LLRKPASV-LSISLDGKYLA-MGSKD----GDICVVDVK-KMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS  307 (392)
Q Consensus       242 ~~~~~v~~-~~~s~~~~~l~-~~~~d----g~i~iwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  307 (392)
                      .....|+. +.++++++.|+ ++..+    ..|+.-++. .++...... .  ...-..+.|||++++++-..
T Consensus       277 ~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~-~--~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  277 SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC-E--DGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             -SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESST-T--SSTTEEEEE-TTSSEEEEEE
T ss_pred             cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccC-C--CCCceEEEECCCCCEEEEEE
Confidence            44556744 67888877665 44432    246666777 555544432 1  22226999999999876543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.77  E-value=2.4e-05  Score=69.83  Aligned_cols=114  Identities=18%  Similarity=0.256  Sum_probs=81.2

Q ss_pred             EEEEEecC-CCCeEEEE----cCCCc----EEEEECCCCe--eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccE
Q 016257          157 VLDMDFSL-DSEFLATT----STDGS----ARIWKTEDGV--AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (392)
Q Consensus       157 i~~i~~~~-~~~~l~~~----~~d~~----i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~  225 (392)
                      ..++.|+- +...+.+.    +.+|.    -.+|++...+  .+.....+....+.+++++|+...     ++.|..||.
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~k-----LvlGC~DgS  282 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDK-----LVLGCEDGS  282 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccce-----EEEEecCCe
Confidence            35667766 33444443    33443    3467765443  223333345567999999999998     899999999


Q ss_pred             EEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce
Q 016257          226 LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (392)
Q Consensus       226 i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  277 (392)
                      |.+||...+...  .....-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus       283 iiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  283 IILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            999999875433  22334567899999999999999999999999987543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=3.3e-06  Score=78.03  Aligned_cols=203  Identities=13%  Similarity=0.035  Sum_probs=130.9

Q ss_pred             EEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCC-eEEEEecCCCCEEEEEeCCC-----cEEEEeCCC
Q 016257           70 AVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGP-QKCLSFSVDGSRFAAGGVDG-----HLRIMHWPS  143 (392)
Q Consensus        70 ~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~  143 (392)
                      +|++.+..++.|+.+|.|.+.+-.-. ....+..       +... |..+....+..+|++.+.|+     .+++|+++.
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~~-~~~~fqa-------~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek  101 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSFQ-LIRGFQA-------YEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK  101 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccce-eeehhee-------cchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence            46788889999999998887763221 1111111       1122 33343333446788777664     489999863


Q ss_pred             C---c---ee--eccc---CC--CCcEEEEEecCCCCeEEEEcCCCcEEEEEC---CCCeeeEEEecCCCcceEEEEecC
Q 016257          144 L---R---II--LDEP---KA--HKSVLDMDFSLDSEFLATTSTDGSARIWKT---EDGVAWTFLTRNSDEKIELCRFSK  207 (392)
Q Consensus       144 ~---~---~~--~~~~---~~--~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~---~~~~~~~~~~~~~~~~v~~~~~~~  207 (392)
                      .   .   +.  ..+.   ..  ..++.+++.+.+-+.+|+|-.||.|..+.-   +.......+....+++|+.+++..
T Consensus       102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~  181 (933)
T KOG2114|consen  102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS  181 (933)
T ss_pred             cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence            2   1   22  0111   12  347889999999999999999999998853   222223344445567999999999


Q ss_pred             CCCcceEEEEEEeCCccEEEEEeCCCcee-eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccc
Q 016257          208 DGTKPFLFCTVQRGDKALLAVYDISTWNK-IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH  286 (392)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  286 (392)
                      ++... ++ +++   ...|.+|.+....+ ...+..++.++.|.++++....+++++. ..+.+||.+..+....+..+|
T Consensus       182 d~~s~-lF-v~T---t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~  255 (933)
T KOG2114|consen  182 DGKSV-LF-VAT---TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGE  255 (933)
T ss_pred             CCcee-EE-EEe---cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCC
Confidence            99863 11 232   45689999885442 3446677888999999876654555553 459999998766666554454

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.74  E-value=3e-07  Score=85.13  Aligned_cols=181  Identities=14%  Similarity=0.132  Sum_probs=131.8

Q ss_pred             CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCC
Q 016257           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (392)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  154 (392)
                      +..++.|+....+..+|+.+.+.......       ..+.|.-+..  +++++.+|...|+|.+-|.++.+.+.++..|.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-------~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs  217 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNV-------SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS  217 (1118)
T ss_pred             Ccceeecchhhheeeeecccceeeeeeec-------cCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccc
Confidence            44666777777788888877664332221       1123555544  67899999999999999999999999999999


Q ss_pred             CcEEEEEecCCCCeEEEEcC---------CCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccE
Q 016257          155 KSVLDMDFSLDSEFLATTST---------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (392)
Q Consensus       155 ~~i~~i~~~~~~~~l~~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~  225 (392)
                      +.|.++..+  |+.|++++.         |..|+|||++..+.+.-+..+..  ..-+.|.|.-...    ++..+..|.
T Consensus       218 ~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~Psl~t~----~~V~S~sGq  289 (1118)
T KOG1275|consen  218 GSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFHPSLTTR----LAVTSQSGQ  289 (1118)
T ss_pred             cceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhcccccce----EEEEecccc
Confidence            999876665  889998874         56689999998777665554432  3567788864431    577777888


Q ss_pred             EEEEeCCCce----eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEe
Q 016257          226 LAVYDISTWN----KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (392)
Q Consensus       226 i~v~d~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  272 (392)
                      ..+-|..+..    .+.........+..+.+|++|..++.|..+|.|.+|.
T Consensus       290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            8888843221    1233334455699999999999999999999999997

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.74  E-value=1.4e-05  Score=73.89  Aligned_cols=286  Identities=12%  Similarity=0.066  Sum_probs=157.6

Q ss_pred             CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCe--EEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccC
Q 016257           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQ--KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (392)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  152 (392)
                      +..++.++.++.++-.|..+++...+........ .....+  ..+... ++..++.++.++.|+-+|.++++.+.+...
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~-~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~  138 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPAD-RGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGN  138 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCcc-ccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence            4466777788999999998887665543321100 000000  011111 225788888999999999999998766543


Q ss_pred             CCCc--EEEEEecC--CCCeEEEEc---------CCCcEEEEECCCCeeeEEEecCCCcc-------------------e
Q 016257          153 AHKS--VLDMDFSL--DSEFLATTS---------TDGSARIWKTEDGVAWTFLTRNSDEK-------------------I  200 (392)
Q Consensus       153 ~~~~--i~~i~~~~--~~~~l~~~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~-------------------v  200 (392)
                      ....  -..+.-+|  .+..++.++         .++.+..+|..+++.+-.+.......                   +
T Consensus       139 ~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~v  218 (488)
T cd00216         139 NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTS  218 (488)
T ss_pred             CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCc
Confidence            3210  01111122  124455554         36789999999998877665421100                   0


Q ss_pred             -EEEEecCCCCcceEEEEEEeCCc------------------cEEEEEeCCCceeeeeecccCCCc------EEEEEC--
Q 016257          201 -ELCRFSKDGTKPFLFCTVQRGDK------------------ALLAVYDISTWNKIGHKRLLRKPA------SVLSIS--  253 (392)
Q Consensus       201 -~~~~~~~~~~~~~~~~~~~~~~d------------------~~i~v~d~~~~~~~~~~~~~~~~v------~~~~~s--  253 (392)
                       ...++.+.+..     ++.+..+                  +.+.-+|.++++.+-.........      ....+.  
T Consensus       219 w~~pa~d~~~g~-----V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~  293 (488)
T cd00216         219 WASPTYDPKTNL-----VYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADI  293 (488)
T ss_pred             cCCeeEeCCCCE-----EEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEec
Confidence             12333433343     3444433                  379999999998875543211111      011111  


Q ss_pred             --CCCC---EEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEE------------------eCCC
Q 016257          254 --LDGK---YLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA------------------SKEW  310 (392)
Q Consensus       254 --~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~------------------~~dg  310 (392)
                        -+|.   .++.++.+|.+...|.++++.+-......     ..++.+| + .++.+                  ..+|
T Consensus       294 ~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-----~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G  366 (488)
T cd00216         294 KPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE-----QPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKG  366 (488)
T ss_pred             cccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec-----cccccCC-c-eEEEccccccccCcccccCCCCCCCce
Confidence              1333   67888899999999999999776542210     1122222 1 12111                  1234


Q ss_pred             eEEEEEeecCccccceeeeee-----------e--eeeeeeceEEEEeeecceeeeecccccccccCCCCcccccCCCC
Q 016257          311 GAMITKLTVPADWKEWQIYSL-----------L--LALFLASAVVFYIFFENSDSFWNFPVARNQHGGPKIESILRDPQ  376 (392)
Q Consensus       311 ~i~iw~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~p~~~~~~~~~~  376 (392)
                      .+...|+..++  ..|+....           .  .........++.++.|+.++..|..+|+.+-..+...++...|.
T Consensus       367 ~l~AlD~~tG~--~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~  443 (488)
T cd00216         367 GLAALDPKTGK--VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPM  443 (488)
T ss_pred             EEEEEeCCCCc--EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCE
Confidence            44444443332  23322211           0  11223456777778899999999999998877666555655565

The alignment model contains an 8-bladed beta-propeller.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.73  E-value=4.1e-08  Score=55.87  Aligned_cols=39  Identities=33%  Similarity=0.360  Sum_probs=36.3

Q ss_pred             ceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEe
Q 016257          234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (392)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  272 (392)
                      ++++..+..|...|++++|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            356788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.71  E-value=1.1e-06  Score=78.04  Aligned_cols=119  Identities=13%  Similarity=0.173  Sum_probs=82.9

Q ss_pred             CCeeEEEEcC-CCCeEEEE----eCCCe----EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC
Q 016257           64 GDPMTIAVNP-SGDDFVCS----TTNGG----CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (392)
Q Consensus        64 ~~v~~~~~sp-~~~~l~~~----~~d~~----i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (392)
                      ..+.++.||- +...+.+.    +.+|.    -.+|++...+.. ..   ....+.....+.+++++|+.+.|+.|+.||
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klq-rv---svtsipL~s~v~~ca~sp~E~kLvlGC~Dg  281 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQ-RV---SVTSIPLPSQVICCARSPSEDKLVLGCEDG  281 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCcee-EE---EEEEEecCCcceEEecCcccceEEEEecCC
Confidence            4456777775 33344443    23343    346777655422 11   122234667999999999999999999999


Q ss_pred             cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee
Q 016257          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA  188 (392)
Q Consensus       135 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~  188 (392)
                      +|.+||...+....  ....-..+.++|+|+|..+++|+..|.+.+||+.-...
T Consensus       282 SiiLyD~~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi  333 (545)
T PF11768_consen  282 SIILYDTTRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI  333 (545)
T ss_pred             eEEEEEcCCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence            99999987654332  22333578899999999999999999999999865433

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.67  E-value=5.6e-05  Score=64.03  Aligned_cols=247  Identities=12%  Similarity=0.070  Sum_probs=144.9

Q ss_pred             eeEEEEcCCCCeEEEEe----------CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe--CC
Q 016257           66 PMTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VD  133 (392)
Q Consensus        66 v~~~~~sp~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d  133 (392)
                      .-.+..+|+++.+++++          +.-.|.+||..+.....++.....+..........++++.|++++++..  -.
T Consensus        38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa  117 (342)
T PF06433_consen   38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA  117 (342)
T ss_dssp             SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred             CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCC
Confidence            33467899999888653          3446999999888765554433221111223445678999999888754  34


Q ss_pred             CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECC-CCeeeEEEe---cCCCcc-eEEEEecCC
Q 016257          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVAWTFLT---RNSDEK-IELCRFSKD  208 (392)
Q Consensus       134 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~---~~~~~~-v~~~~~~~~  208 (392)
                      -.|.|.|++..+.+.++...  .+..+--++. +-+.+-+.||++.-..+. .|+...+..   .....+ +..-++...
T Consensus       118 ~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~  194 (342)
T PF06433_consen  118 TSVTVVDLAAKKVVGEIDTP--GCWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD  194 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEGT--SEEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred             CeEEEEECCCCceeeeecCC--CEEEEEecCC-CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence            67999999988876544322  2222222222 447777889999988887 455543221   111111 223334444


Q ss_pred             CCcceEEEEEEeCCccEEEEEeCCCceee--eeecc----------cCCCcEEEEECCCCCEEEEEeC---CC-------
Q 016257          209 GTKPFLFCTVQRGDKALLAVYDISTWNKI--GHKRL----------LRKPASVLSISLDGKYLAMGSK---DG-------  266 (392)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~--~~~~~----------~~~~v~~~~~s~~~~~l~~~~~---dg-------  266 (392)
                      +..     ++--+..|.|+--|+......  .....          ..+.-.-+++++..+.|++.-.   ++       
T Consensus       195 ~~~-----~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt  269 (342)
T PF06433_consen  195 GGR-----LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT  269 (342)
T ss_dssp             TTE-----EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred             CCe-----EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence            433     344567788888887654321  11110          0123345788876666655322   11       


Q ss_pred             cEEEEecCCceeeeeeeccccCcceEEEEEeeCCC-eEEEEe-CCCeEEEEEeecCccc
Q 016257          267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTAS-KEWGAMITKLTVPADW  323 (392)
Q Consensus       267 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~  323 (392)
                      .|.++|+.+++.+..+..   ..++.++..+.+.+ +|++.+ .++.+.+||..+++..
T Consensus       270 eVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV  325 (342)
T ss_dssp             EEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred             EEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence            388889999999888754   34788999999877 665554 5789999999876543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.67  E-value=8.5e-07  Score=82.28  Aligned_cols=182  Identities=15%  Similarity=0.152  Sum_probs=130.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEE
Q 016257          123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL  202 (392)
Q Consensus       123 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~  202 (392)
                      ++..++-|+....+..+|+++.+......-....|.-|.  .+++.+.+|...|+|.+-|.++.+.++++..|.+ .+..
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~-siSD  222 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG-SISD  222 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeecccc-ceee
Confidence            345677777777888889988776554433333455444  4578999999999999999999999999988765 4544


Q ss_pred             EEecCCCCcceEEEEEEeC---------CccEEEEEeCCCceeeeeecccCCCcEEEEECCCC-CEEEEEeCCCcEEEEe
Q 016257          203 CRFSKDGTKPFLFCTVQRG---------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVD  272 (392)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~---------~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd  272 (392)
                        |+-.|+.     +++++         .|..|+|||+|..+.+..+..+.++ .-+.|+|.- ..+++.+..|...+-|
T Consensus       223 --fDv~GNl-----LitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd  294 (1118)
T KOG1275|consen  223 --FDVQGNL-----LITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVD  294 (1118)
T ss_pred             --eeccCCe-----EEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeecc
Confidence              4555664     44444         3667999999988776655554443 557788863 5678888899999999


Q ss_pred             cCC---ceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEE
Q 016257          273 VKK---MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (392)
Q Consensus       273 ~~~---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  316 (392)
                      ..+   ...-....... ...+..+.++++++.|+.|..+|.|.+|.
T Consensus       295 ~~~lsNP~~~~~~v~p~-~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  295 TATLSNPPAGVKMVNPN-GSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccccCCCccceeEEccC-CCcceeEEecCCCceEEEecccCcEeeec
Confidence            433   21111111122 45599999999999999999999999998

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.67  E-value=8.8e-07  Score=81.59  Aligned_cols=113  Identities=16%  Similarity=0.217  Sum_probs=87.4

Q ss_pred             CCCeeEEEEcCCCCeEEEEe----CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEE
Q 016257           63 EGDPMTIAVNPSGDDFVCST----TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  138 (392)
                      .+..+-..|+|...++++++    ..|.|.||- ++++......        -.-.+.+++|+|..-.|+.|-.-|.+.+
T Consensus        15 davsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--------~P~hatSLCWHpe~~vLa~gwe~g~~~v   85 (1416)
T KOG3617|consen   15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT--------YPVHATSLCWHPEEFVLAQGWEMGVSDV   85 (1416)
T ss_pred             cccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc--------cceehhhhccChHHHHHhhccccceeEE
Confidence            34455578999999998876    457788884 4444222211        1224577999999888999999999999


Q ss_pred             EeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECC
Q 016257          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE  184 (392)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~  184 (392)
                      |...+.+.......|..+|..+.||++|..++++..-|.+.+|...
T Consensus        86 ~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   86 QKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             EecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            9988776665566677799999999999999999999999999875

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=9e-06  Score=75.30  Aligned_cols=209  Identities=11%  Similarity=0.083  Sum_probs=127.3

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCC-eeEEEEcCCCCeEEEEeCC
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-PMTIAVNPSGDDFVCSTTN   84 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~sp~~~~l~~~~~d   84 (392)
                      .|.|  |++.+   ..++.|+..|.        |+.++..       ......++.++.. |..+....+.++|++.+.|
T Consensus        27 ~isc--~~s~~---~~vvigt~~G~--------V~~Ln~s-------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed   86 (933)
T KOG2114|consen   27 AISC--CSSST---GSVVIGTADGR--------VVILNSS-------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGED   86 (933)
T ss_pred             ceeE--EcCCC---ceEEEeecccc--------EEEeccc-------ceeeehheecchhhhhHhhcccCceEEEEEeec
Confidence            4444  45554   34666666543        6666521       1222456666666 4444444444677776665


Q ss_pred             C-----eEEEEEEeCCccce--eec----cccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC----CCceeec
Q 016257           85 G-----GCKLFEVYGGATDI--NLL----AKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP----SLRIILD  149 (392)
Q Consensus        85 ~-----~i~iw~~~~~~~~~--~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~----~~~~~~~  149 (392)
                      +     .++||+++..+...  ...    ....+......++.+++.+.+-+.+|+|-.+|.|..+.-+    .+....-
T Consensus        87 ~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~  166 (933)
T KOG2114|consen   87 EQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY  166 (933)
T ss_pred             CCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee
Confidence            4     48999997653211  111    1111111245788999999999999999999999988532    1111222


Q ss_pred             ccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEE
Q 016257          150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (392)
Q Consensus       150 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~  229 (392)
                      ......+|+.+++..+++.++.+..-..|.+|.+....+......+++..+.|-.+++....      +.++....+.+|
T Consensus       167 ~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q------fIca~~e~l~fY  240 (933)
T KOG2114|consen  167 SHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ------FICAGSEFLYFY  240 (933)
T ss_pred             eccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCcc------EEEecCceEEEE
Confidence            23344589999999888773333334679999998555445545566778889999887664      333445679999


Q ss_pred             eCCCceeeeee
Q 016257          230 DISTWNKIGHK  240 (392)
Q Consensus       230 d~~~~~~~~~~  240 (392)
                      |....++-..+
T Consensus       241 ~sd~~~~cfaf  251 (933)
T KOG2114|consen  241 DSDGRGPCFAF  251 (933)
T ss_pred             cCCCcceeeee
Confidence            98755444333

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.60  E-value=4.4e-05  Score=68.64  Aligned_cols=225  Identities=12%  Similarity=0.143  Sum_probs=119.4

Q ss_pred             EEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcE
Q 016257           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (392)
Q Consensus        57 ~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  136 (392)
                      ..+....-.+..+.++|+|+++++ +.+|.-.|+.....+.  .          ..+.-....|.+.+ .+|+-..+++|
T Consensus        26 k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~--k----------~~G~g~~~vw~~~n-~yAv~~~~~~I   91 (443)
T PF04053_consen   26 KELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN--K----------AFGSGLSFVWSSRN-RYAVLESSSTI   91 (443)
T ss_dssp             EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE--E----------EEEE-SEEEE-TSS-EEEEE-TTS-E
T ss_pred             ccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc--c----------ccCceeEEEEecCc-cEEEEECCCeE
Confidence            344445567899999999999988 5677677776222211  1          11344678898855 56666668889


Q ss_pred             EEE-eCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257          137 RIM-HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (392)
Q Consensus       137 ~i~-d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (392)
                      .++ +++... ...+... ..+..|-.   |.+|...+. +.|.+||.++++.++.+...   +|..+.|++++..    
T Consensus        92 ~I~kn~~~~~-~k~i~~~-~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~----  158 (443)
T PF04053_consen   92 KIYKNFKNEV-VKSIKLP-FSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS---AVKYVIWSDDGEL----  158 (443)
T ss_dssp             EEEETTEE-T-T-----S-S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS----E-EEEEE-TTSSE----
T ss_pred             EEEEcCcccc-ceEEcCC-cccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC---CCcEEEEECCCCE----
Confidence            996 432221 1112111 12333322   777777765 48999999999999988633   4899999999996    


Q ss_pred             EEEEeCCccEEEEEeCCCc-----------eeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec
Q 016257          216 CTVQRGDKALLAVYDISTW-----------NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR  284 (392)
Q Consensus       216 ~~~~~~~d~~i~v~d~~~~-----------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  284 (392)
                       ++..+ +..+.+++.+..           ............|.+..|..+  .++-.+.. .|+.  +-.|+.-...  
T Consensus       159 -val~t-~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~--  229 (443)
T PF04053_consen  159 -VALVT-KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIA--  229 (443)
T ss_dssp             -EEEE--S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEE--
T ss_pred             -EEEEe-CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEE--
Confidence             33333 345666665432           012222222457788888766  44444433 6666  4555543322  


Q ss_pred             cccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          285 LHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       285 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                       |...++.-+...++...+.....|+.+..+.++
T Consensus       230 -~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  230 -HLDKPLYLLGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             -E-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred             -EcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence             225678888888877788889999999888776

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=3.3e-06  Score=71.32  Aligned_cols=229  Identities=11%  Similarity=0.003  Sum_probs=130.7

Q ss_pred             EEEEeCCCCceeecccCCCCcEEEEEecCCCC-eEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE
Q 016257          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (392)
Q Consensus       136 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (392)
                      ++..+..+.+...-+..+...|.+++|+|..+ ++..++.+.+|+|.|+++...+..+..+  ..+.+++|.-+..+.  
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h~--  250 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERHV--  250 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCcce--
Confidence            55555544444443444555899999999776 7888999999999999999888888765  379999999998762  


Q ss_pred             EEEEEeCCccEEEEEeCCCceee-eeecc--cCCCcEEEE------ECCCCCEEEEEeCCCcEEEEecCCc--eeeeeee
Q 016257          215 FCTVQRGDKALLAVYDISTWNKI-GHKRL--LRKPASVLS------ISLDGKYLAMGSKDGDICVVDVKKM--EINHWSK  283 (392)
Q Consensus       215 ~~~~~~~~d~~i~v~d~~~~~~~-~~~~~--~~~~v~~~~------~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~  283 (392)
                        +..|-..|.|.+||++..+-. ..+..  ...+|..++      ..+.|.+++....+  +..|++...  .......
T Consensus       251 --IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vle  326 (463)
T KOG1645|consen  251 --IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLE  326 (463)
T ss_pred             --eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccc
Confidence              678888999999999975432 11111  123343332      23345555555543  566765432  2222222


Q ss_pred             ccccCcceEEEEEeeCCCeEEEE-eCC------CeEEEEEeecCccccceeeeeee-----------eee---eeeceEE
Q 016257          284 RLHLGTSIALVEFCPTQRVVLTA-SKE------WGAMITKLTVPADWKEWQIYSLL-----------LAL---FLASAVV  342 (392)
Q Consensus       284 ~~~~~~~i~~~~~s~~~~~l~~~-~~d------g~i~iw~~~~~~~~~~~~~~~~~-----------~~~---~~~~~~~  342 (392)
                      ... .+...++...+-.+.++.. -.+      ..+-. ........+++......           ...   .-....+
T Consensus       327 le~-pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~-~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv  404 (463)
T KOG1645|consen  327 LEP-PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILG-RIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIV  404 (463)
T ss_pred             cCC-CcceeeeeecCccceEEEEecCCCCCccceeeee-eeccccCceeeeecccccCCcccccccccceeccccccEEE
Confidence            222 4555566665544444333 221      01111 11111111222111100           000   0012233


Q ss_pred             EEeeecceeeeecccccccccCCCCcccccCC
Q 016257          343 FYIFFENSDSFWNFPVARNQHGGPKIESILRD  374 (392)
Q Consensus       343 ~~~~~d~~i~~W~~~~~~~~~~~p~~~~~~~~  374 (392)
                      .++..-+.+.+||....+-++..|..++++..
T Consensus       405 ~~gd~tn~lil~D~~s~evvQ~l~~~epv~Di  436 (463)
T KOG1645|consen  405 VVGDSTNELILQDPHSFEVVQTLALSEPVLDI  436 (463)
T ss_pred             EecCCcceeEEeccchhheeeecccCcceeec
Confidence            33334567999999999988887877666653

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.57  E-value=2.1e-05  Score=71.91  Aligned_cols=184  Identities=9%  Similarity=0.026  Sum_probs=113.4

Q ss_pred             EcCCCCeEEE-EeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC----cEEEEeCCCCc
Q 016257           71 VNPSGDDFVC-STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG----HLRIMHWPSLR  145 (392)
Q Consensus        71 ~sp~~~~l~~-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~  145 (392)
                      ++|||+.+.. .-..+.+.+.|.++.+...+...        .+....+.++++|+++++.+.+.    ++...+..+..
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V--------dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d  271 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV--------DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD  271 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEe--------CCCcccceECCCCCEEEEeccCcccCcceeeeccccCc
Confidence            3445554432 22345566677666554444332        22446788999999998876422    23333222211


Q ss_pred             eeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCC-----CeeeEEEecCCCcceEEEEecCCCCcceEEEEEEe
Q 016257          146 IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-----GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (392)
Q Consensus       146 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (392)
                      .+..+.-  ..+  -++.++|++...+  ++.|.+.|.++     .+.+..+..+  .....+.++|||+++    ++++
T Consensus       272 ~~vvfni--~~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vSPDGkyl----yVan  339 (635)
T PRK02888        272 WVVVFNI--ARI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTSPDGKYF----IANG  339 (635)
T ss_pred             eEEEEch--HHH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECC--CCccceEECCCCCEE----EEeC
Confidence            1110000  000  0334577766653  57899999988     4555555543  357899999999973    4677


Q ss_pred             CCccEEEEEeCCCcee------------eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 016257          221 GDKALLAVYDISTWNK------------IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (392)
Q Consensus       221 ~~d~~i~v~d~~~~~~------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  275 (392)
                      ..+..+.|+|+.+.+.            ..+... ...-...+|.++|+...+-.-|..|-.||+.+
T Consensus       340 klS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        340 KLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            7799999999987553            222222 23334678999998888888999999999876

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.55  E-value=7.5e-08  Score=88.80  Aligned_cols=186  Identities=17%  Similarity=0.198  Sum_probs=136.0

Q ss_pred             CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCC--cEEEEECCC-Ce
Q 016257          111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG--SARIWKTED-GV  187 (392)
Q Consensus       111 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~--~i~vwd~~~-~~  187 (392)
                      +....+|++|+-+.+.|++|+..|.|+++++.+|........|...|+.+.-+.||..+++.+.-.  -..+|++.. +.
T Consensus      1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~ 1179 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG 1179 (1516)
T ss_pred             cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccC
Confidence            567789999999999999999999999999999998888888888999999999998877765433  367999864 33


Q ss_pred             eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc----cCCCcEEEEECCCCCEEEEEe
Q 016257          188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL----LRKPASVLSISLDGKYLAMGS  263 (392)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~  263 (392)
                      ..+++.     .-.++.|+.....     -+.|.......+||+.++.++.++-.    ....-++..|+|+..+++   
T Consensus      1180 ~~Hsf~-----ed~~vkFsn~~q~-----r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--- 1246 (1516)
T KOG1832|consen 1180 PRHSFD-----EDKAVKFSNSLQF-----RALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--- 1246 (1516)
T ss_pred             cccccc-----ccceeehhhhHHH-----HHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---
Confidence            334433     3467888877543     35555556789999999877655321    123346789999988876   


Q ss_pred             CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          264 KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       264 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      .||  .+||++..+.++.+.+.  . .--.=.|+|.|.-++.-+     .|||+++
T Consensus      1247 ndG--vLWDvR~~~aIh~FD~f--t-~~~~G~FHP~g~eVIINS-----EIwD~RT 1292 (1516)
T KOG1832|consen 1247 NDG--VLWDVRIPEAIHRFDQF--T-DYGGGGFHPSGNEVIINS-----EIWDMRT 1292 (1516)
T ss_pred             eCc--eeeeeccHHHHhhhhhh--e-ecccccccCCCceEEeec-----hhhhhHH
Confidence            355  38999988766655322  1 112235999999888766     4788764

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=1.5e-05  Score=73.32  Aligned_cols=183  Identities=16%  Similarity=0.188  Sum_probs=124.2

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  142 (392)
                      .+.++|++++  ++.|+.|..+|.|++++....- ...        +.|...      ..+|.++++++.||+|.|-.+-
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~--------~~~s~~------~~~Gey~asCS~DGkv~I~sl~  101 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTN--------FDHSSS------ILEGEYVASCSDDGKVVIGSLF  101 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCcc-ccc--------cccccc------ccCCceEEEecCCCcEEEeecc
Confidence            4567788885  5699999999999999876542 111        112222      5689999999999999999988


Q ss_pred             CCceeecccCCCCcEEEEEecCC-----CCeEEEEcCCCcEEEEECCC-CeeeEEEecCCCcceEEEEecCCCCcceEEE
Q 016257          143 SLRIILDEPKAHKSVLDMDFSLD-----SEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFC  216 (392)
Q Consensus       143 ~~~~~~~~~~~~~~i~~i~~~~~-----~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (392)
                      +.+...+ ...+.++.+++++|+     .+.+++|+.-| +.++.-+- +...........++|.++.|.-+  .     
T Consensus       102 ~~~~~~~-~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~--l-----  172 (846)
T KOG2066|consen  102 TDDEITQ-YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN--L-----  172 (846)
T ss_pred             CCcccee-EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc--E-----
Confidence            7766533 344568999999997     56799999888 77775331 11111223334568999999754  2     


Q ss_pred             EEEeCCccEEEEEeCCCceeeeeecccCCCc------EEEEECCCCCEEEEEeCCCcEEEEecC
Q 016257          217 TVQRGDKALLAVYDISTWNKIGHKRLLRKPA------SVLSISLDGKYLAMGSKDGDICVVDVK  274 (392)
Q Consensus       217 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v------~~~~~s~~~~~l~~~~~dg~i~iwd~~  274 (392)
                      ++-++++| |++||+.+.+.+..+......+      ..+.|.++ ..|+.|-.| +|+|..++
T Consensus       173 IAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  173 IAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGD-SVKICSIK  233 (846)
T ss_pred             EEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCC-eEEEEEEe
Confidence            44555554 9999999888776655433333      34677655 455666554 58888887

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.51  E-value=1.2e-05  Score=74.41  Aligned_cols=113  Identities=13%  Similarity=0.158  Sum_probs=77.1

Q ss_pred             eeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeE
Q 016257            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGC   87 (392)
Q Consensus         8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i   87 (392)
                      +-.+|+|..+-+++......+     .+.+.||.=.   ..    |....+.   .-.+++++|+|..-.|+.|..-|.+
T Consensus        19 ti~SWHPsePlfAVA~fS~er-----~GSVtIfadt---GE----Pqr~Vt~---P~hatSLCWHpe~~vLa~gwe~g~~   83 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPER-----GGSVTIFADT---GE----PQRDVTY---PVHATSLCWHPEEFVLAQGWEMGVS   83 (1416)
T ss_pred             cccccCCCCceeEEEEecCCC-----CceEEEEecC---CC----CCccccc---ceehhhhccChHHHHHhhcccccee
Confidence            346899977543333333333     3446666422   11    1111122   2236679999998889999999999


Q ss_pred             EEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257           88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (392)
Q Consensus        88 ~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  142 (392)
                      .+|...+.+..       .....|..+|..+.||++|..++++..-|.+.+|...
T Consensus        84 ~v~~~~~~e~h-------tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   84 DVQKTNTTETH-------TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             EEEecCCceee-------eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            99987765421       2223488899999999999999999999999999765

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.51  E-value=3.5e-05  Score=70.55  Aligned_cols=186  Identities=13%  Similarity=0.097  Sum_probs=112.6

Q ss_pred             CCCeEEEEcC-CCcEEEEECCCCeeeEEEecCCCcceEEEE-------------------ecCCCCcceEEEEEEeCCcc
Q 016257          165 DSEFLATTST-DGSARIWKTEDGVAWTFLTRNSDEKIELCR-------------------FSKDGTKPFLFCTVQRGDKA  224 (392)
Q Consensus       165 ~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~-------------------~~~~~~~~~~~~~~~~~~d~  224 (392)
                      ||++|+.-.. +..|...+++..++.+.+..+....+..++                   +.|||+.+    .......+
T Consensus       140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l----~~~~ey~~  215 (635)
T PRK02888        140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDL----DDPKKYRS  215 (635)
T ss_pred             ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEe----ecccceeE
Confidence            6778877663 556777777766665544433222233333                   34455431    12344557


Q ss_pred             EEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeC----------------------------------------
Q 016257          225 LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK----------------------------------------  264 (392)
Q Consensus       225 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------------------------------------  264 (392)
                      .+.+.|..+.+...+.... .....++++|+|+++++.+.                                        
T Consensus       216 ~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~  294 (635)
T PRK02888        216 LFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIG  294 (635)
T ss_pred             EEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEEC
Confidence            7888888877666555442 34456788888888877751                                        


Q ss_pred             CCcEEEEecCC-----ceeeeeeeccccCcceEEEEEeeCCCeEEEEe-CCCeEEEEEeecCcccc------------ce
Q 016257          265 DGDICVVDVKK-----MEINHWSKRLHLGTSIALVEFCPTQRVVLTAS-KEWGAMITKLTVPADWK------------EW  326 (392)
Q Consensus       265 dg~i~iwd~~~-----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~------------~~  326 (392)
                      +++|.+.|..+     .+....+..   ......+.++|||+++++++ .++++.|.|+......-            ..
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev  371 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP  371 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee
Confidence            24577788777     345554433   55788999999999877665 48999999998654311            01


Q ss_pred             eeeeeeeeeeee--ceEEEEeeecceeeeecccc
Q 016257          327 QIYSLLLALFLA--SAVVFYIFFENSDSFWNFPV  358 (392)
Q Consensus       327 ~~~~~~~~~~~~--~~~~~~~~~d~~i~~W~~~~  358 (392)
                      .+-..+......  .....+.+.|..|-.|++..
T Consensus       372 evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        372 ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            111111111111  22334456799999999987

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.49  E-value=3.8e-05  Score=68.78  Aligned_cols=190  Identities=19%  Similarity=0.182  Sum_probs=115.6

Q ss_pred             eeCCCCCeeEEEEcCCCCeEEEEe---CC-CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CC
Q 016257           59 FDESEGDPMTIAVNPSGDDFVCST---TN-GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VD  133 (392)
Q Consensus        59 ~~~h~~~v~~~~~sp~~~~l~~~~---~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d  133 (392)
                      +..-...+..-+|+|+++.++...   .. ..+.++++.+++......        ..+.-...+|+|||++|+... .|
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------~~g~~~~P~fspDG~~l~f~~~rd  259 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------FNGNNGAPAFSPDGSKLAFSSSRD  259 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------cCCccCCccCCCCCCEEEEEECCC
Confidence            333456778889999998766542   23 468899998876433332        223456678999999877654 45


Q ss_pred             Cc--EEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEc-CCCc--EEEEECCCCeeeEEEecCCCcceEEEEecCC
Q 016257          134 GH--LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKD  208 (392)
Q Consensus       134 g~--i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (392)
                      |.  |+++|+..++.. .+....+.-..-.|+|||++++..+ ..|.  |.+.+.+.+.. ..+...... -....|+||
T Consensus       260 g~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~-~~~p~~Spd  336 (425)
T COG0823         260 GSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG-NSNPVWSPD  336 (425)
T ss_pred             CCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC-CcCccCCCC
Confidence            54  666677666533 3333333334678999999887665 4444  66666655544 333333222 227789999


Q ss_pred             CCcceEEEEEEeCCccE--EEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeC
Q 016257          209 GTKPFLFCTVQRGDKAL--LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK  264 (392)
Q Consensus       209 ~~~~~~~~~~~~~~d~~--i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  264 (392)
                      |+++.    +....+|.  |.+.|+.++...+.+ ..........|.|+|+.+...+.
T Consensus       337 G~~i~----~~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         337 GDKIV----FESSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             CCEEE----EEeccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEecc
Confidence            99732    22222343  777777665532222 22334445678888888766554

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=98.47  E-value=0.0005  Score=60.08  Aligned_cols=272  Identities=10%  Similarity=0.075  Sum_probs=117.2

Q ss_pred             CcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEc-----------CCCCeEEEEe-CCCeEEEEEEeCCcccee
Q 016257           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN-----------PSGDDFVCST-TNGGCKLFEVYGGATDIN  100 (392)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-----------p~~~~l~~~~-~d~~i~iw~~~~~~~~~~  100 (392)
                      ....+....++++.....+ -..+..+..-.+.....-|+           .+.++|+..+ .+++|+|.|+.+.....+
T Consensus        35 ~pD~LatVDvdP~S~tYgq-VIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~  113 (461)
T PF05694_consen   35 KPDYLATVDVDPDSPTYGQ-VIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPR  113 (461)
T ss_dssp             ---EEEEEE--TTSTTTTS-EEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-E
T ss_pred             CCCeEEEEECCCCCCCccc-EEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCc
Confidence            3555667777765443311 11122222222455555564           2345666655 778899999985543222


Q ss_pred             ecccc----CCCCCCCCCeEEEEecCCCCEEEEEe--C----CCcEEEEeCCCCceeecccCCCC---cEEEEEecCCCC
Q 016257          101 LLAKK----MPPLQDAGPQKCLSFSVDGSRFAAGG--V----DGHLRIMHWPSLRIILDEPKAHK---SVLDMDFSLDSE  167 (392)
Q Consensus       101 ~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~--~----dg~i~i~d~~~~~~~~~~~~~~~---~i~~i~~~~~~~  167 (392)
                      +....    ...-..-.....+-.-|+|+.++++-  .    -|-+.++|-++.+..........   --+++-|.|..+
T Consensus       114 l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n  193 (461)
T PF05694_consen  114 LHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN  193 (461)
T ss_dssp             EEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTT
T ss_pred             eEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC
Confidence            21100    00000011223334457888888753  2    25578888877766655443322   356788899888


Q ss_pred             eEEEEc--------------------CCCcEEEEECCCCeeeEEEecCCCc-ceEEEEecCCCCcceEEEEEEeCCccEE
Q 016257          168 FLATTS--------------------TDGSARIWKTEDGVAWTFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALL  226 (392)
Q Consensus       168 ~l~~~~--------------------~d~~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~i  226 (392)
                      .++++.                    ...++.+||+.+.+.++++....++ ..-.+.|..+....+-|+ .++ -..+|
T Consensus       194 vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFv-g~a-Lss~i  271 (461)
T PF05694_consen  194 VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFV-GCA-LSSSI  271 (461)
T ss_dssp             EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEE-EEE---EEE
T ss_pred             EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEE-EEe-ccceE
Confidence            888864                    2357999999999999999876543 355677766654433321 222 33344


Q ss_pred             EEEeC-CCce----eeeeec-----------------ccCCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCceeeeeee
Q 016257          227 AVYDI-STWN----KIGHKR-----------------LLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSK  283 (392)
Q Consensus       227 ~v~d~-~~~~----~~~~~~-----------------~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~  283 (392)
                      ..|-. +.++    .+..+.                 ....-++.+.+|.|.++|+..+ ..|.|+.||+......+...
T Consensus       272 ~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~g  351 (461)
T PF05694_consen  272 WRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVG  351 (461)
T ss_dssp             EEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEE
T ss_pred             EEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEe
Confidence            44432 3221    111111                 1134578999999999998877 68999999998744333221


Q ss_pred             ccc-----------------cCcceEEEEEeeCCCeEEEEe
Q 016257          284 RLH-----------------LGTSIALVEFCPTQRVVLTAS  307 (392)
Q Consensus       284 ~~~-----------------~~~~i~~~~~s~~~~~l~~~~  307 (392)
                      +..                 ..+...-+..|-||+.|...+
T Consensus       352 qv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  352 QVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             EEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             EEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            111                 012335667777887665543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=2.9e-06  Score=72.66  Aligned_cols=208  Identities=12%  Similarity=0.011  Sum_probs=141.6

Q ss_pred             CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC--C-ceeecccCCCCcEEEEEecCCCCeEEEEcC-CCcEEEEECCCC
Q 016257          111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS--L-RIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTEDG  186 (392)
Q Consensus       111 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~--~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~vwd~~~~  186 (392)
                      |...|+.+.-. ..+++.+++.||.++.|--..  + +.+..+..|-..|.+++.+-++.++.+.+. |..++++|+.+-
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            55666666544 456999999999999997432  2 223334445567889999999999999777 999999999875


Q ss_pred             eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce--eeeeecccCCCcEEEEECCCCCEEEEEeC
Q 016257          187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSK  264 (392)
Q Consensus       187 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  264 (392)
                      ..+.-+....-.....+..++....  ....+..-.++.+.++|-....  .......|..+|..+.+.+-+..+++...
T Consensus        87 DminmiKL~~lPg~a~wv~skGd~~--s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~  164 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWVTSKGDKI--SLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI  164 (558)
T ss_pred             chhhhcccccCCCceEEecCCCCee--eeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence            5443332211101112222232221  1113555678899999977543  23344567899999999999999999999


Q ss_pred             CCcEEEEecCC-ceeeee-----ee-------ccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCc
Q 016257          265 DGDICVVDVKK-MEINHW-----SK-------RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (392)
Q Consensus       265 dg~i~iwd~~~-~~~~~~-----~~-------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  321 (392)
                      .|.|.-|.... .+.+..     +.       .........++.|+|+|..+.+-+.|..|+++.++++.
T Consensus       165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk  234 (558)
T KOG0882|consen  165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK  234 (558)
T ss_pred             cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence            99999998873 111110     00       00115678899999999999999999999999998663

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.45  E-value=0.00017  Score=64.36  Aligned_cols=225  Identities=11%  Similarity=0.106  Sum_probs=152.8

Q ss_pred             CCeeEEEEcCCCCeEEE-EeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC---CCcEEEE
Q 016257           64 GDPMTIAVNPSGDDFVC-STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIM  139 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~i~  139 (392)
                      .....++.++.+..++. ...++.|.+.|.............        .....++++++++.+.++..   ++++.+.
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG--------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvi  145 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG--------LGPVGLAVDPDGKYVYVANAGNGNNTVSVI  145 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec--------cCCceEEECCCCCEEEEEecccCCceEEEE
Confidence            34557888888885554 444578999996665543333221        24578999999988877765   6889999


Q ss_pred             eCCCCceeecccCCCCcEEEEEecCCCCeEEEEc-CCCcEEEEECCCCeeeEEEe----cCCCcceEEEEecCCCCcceE
Q 016257          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLT----RNSDEKIELCRFSKDGTKPFL  214 (392)
Q Consensus       140 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~  214 (392)
                      |..+.+..........+ ..++++|+|+.++.+. .++.+.+.|.+.....+ -.    .........+.++|++.+.++
T Consensus       146 d~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV  223 (381)
T COG3391         146 DAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYV  223 (381)
T ss_pred             eCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEE
Confidence            98888887765444445 8899999999766655 67899999976655543 11    111224578899999997443


Q ss_pred             EEEEEeCCccEEEEEeCCCceeeeeecccCC-CcEEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeeccc-cCcce
Q 016257          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSKRLH-LGTSI  291 (392)
Q Consensus       215 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~~~i  291 (392)
                        ....+.++.+...|..++........... ....+..+|+|+.+.+... .+.+.+-|..+.........+. ....+
T Consensus       224 --~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~  301 (381)
T COG3391         224 --ANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEP  301 (381)
T ss_pred             --EeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccc
Confidence              23333457999999998776654222222 4567899999999988854 4889999999887776553321 12346


Q ss_pred             EEEEEeeCC
Q 016257          292 ALVEFCPTQ  300 (392)
Q Consensus       292 ~~~~~s~~~  300 (392)
                      ..+++.+..
T Consensus       302 ~~~~~~~~~  310 (381)
T COG3391         302 VSIAISPLY  310 (381)
T ss_pred             eeccceeec
Confidence            666666643

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.42  E-value=0.00025  Score=58.45  Aligned_cols=201  Identities=11%  Similarity=0.094  Sum_probs=110.5

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCC
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~   85 (392)
                      .+..++|+|+...  |.++....        -.|+.++..+..     +....+.+ .+....+++..++.++++.-+++
T Consensus        23 e~SGLTy~pd~~t--LfaV~d~~--------~~i~els~~G~v-----lr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~   86 (248)
T PF06977_consen   23 ELSGLTYNPDTGT--LFAVQDEP--------GEIYELSLDGKV-----LRRIPLDG-FGDYEGITYLGNGRYVLSEERDQ   86 (248)
T ss_dssp             -EEEEEEETTTTE--EEEEETTT--------TEEEEEETT--E-----EEEEE-SS--SSEEEEEE-STTEEEEEETTTT
T ss_pred             CccccEEcCCCCe--EEEEECCC--------CEEEEEcCCCCE-----EEEEeCCC-CCCceeEEEECCCEEEEEEcCCC
Confidence            4899999998765  44444432        236777755422     23344555 46789999988887777766789


Q ss_pred             eEEEEEEeCCccceee---ccccCCC-CCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC---Cceee--c------c
Q 016257           86 GCKLFEVYGGATDINL---LAKKMPP-LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS---LRIIL--D------E  150 (392)
Q Consensus        86 ~i~iw~~~~~~~~~~~---~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~---~~~~~--~------~  150 (392)
                      .+.++++.........   ....... ..++..+..++|.+.++.|+.+-+..-..+|.+..   .....  .      .
T Consensus        87 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~  166 (248)
T PF06977_consen   87 RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDD  166 (248)
T ss_dssp             EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred             cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccc
Confidence            9999998543321111   1111111 12456789999999888888887776667776643   11110  0      0


Q ss_pred             cCCCCcEEEEEecCC-CCeEEEEcCCCcEEEEECCCCeeeEEEecCC--------CcceEEEEecCCCCcceEEEEEEeC
Q 016257          151 PKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNS--------DEKIELCRFSKDGTKPFLFCTVQRG  221 (392)
Q Consensus       151 ~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~~  221 (392)
                      ......+.+++++|. +.+++.+..+..+..+| .+++.+..+....        -.....|+|.++|.      +...+
T Consensus       167 ~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~------LYIvs  239 (248)
T PF06977_consen  167 KLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN------LYIVS  239 (248)
T ss_dssp             T--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--------EEEEE
T ss_pred             cceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC------EEEEc
Confidence            112235889999995 56677777888899999 5777766554322        12467899999997      45555


Q ss_pred             CccEEEEE
Q 016257          222 DKALLAVY  229 (392)
Q Consensus       222 ~d~~i~v~  229 (392)
                      +-+..++|
T Consensus       240 EpNlfy~f  247 (248)
T PF06977_consen  240 EPNLFYRF  247 (248)
T ss_dssp             TTTEEEEE
T ss_pred             CCceEEEe
Confidence            66655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.39  E-value=1.3e-07  Score=84.26  Aligned_cols=199  Identities=15%  Similarity=0.064  Sum_probs=128.9

Q ss_pred             CCCeeEEEEcCCC--CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEe----CCCc
Q 016257           63 EGDPMTIAVNPSG--DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGG----VDGH  135 (392)
Q Consensus        63 ~~~v~~~~~sp~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----~dg~  135 (392)
                      ...+.|+++.-+.  ..+++|..+|.|.+-.+.........     ....+..++++++|++ |.+.||.|-    .|..
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E-----~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~  130 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAE-----VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS  130 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccce-----ecccccccccccccccccHHHHHhhhhhhcccCC
Confidence            3457777775533  47889999999999887655432111     1113567899999998 777888774    3567


Q ss_pred             EEEEeCCCC--cee--ecccC-CCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee-eEEEecCCCcceEEEEecC-C
Q 016257          136 LRIMHWPSL--RII--LDEPK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSK-D  208 (392)
Q Consensus       136 i~i~d~~~~--~~~--~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~-~  208 (392)
                      +.|||+.++  .+.  ..+.. .-....+++|..+.+++++|...+.+.++|++.... ...+.   ...+..+..+| .
T Consensus       131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn---Tk~vqG~tVdp~~  207 (783)
T KOG1008|consen  131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN---TKYVQGITVDPFS  207 (783)
T ss_pred             ccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh---hhhcccceecCCC
Confidence            999999876  111  11222 223566888998889999999989999999984322 12221   12466777788 4


Q ss_pred             CCcceEEEEEEeCCccEEEEEe-CCCcee-eeeeccc----CCCcEEEEECCCC-CEEEEEeC-CCcEEEEecCC
Q 016257          209 GTKPFLFCTVQRGDKALLAVYD-ISTWNK-IGHKRLL----RKPASVLSISLDG-KYLAMGSK-DGDICVVDVKK  275 (392)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~v~d-~~~~~~-~~~~~~~----~~~v~~~~~s~~~-~~l~~~~~-dg~i~iwd~~~  275 (392)
                      ..+      +.+..|+.|.+|| .+.-+. +..+...    ...+..++|+|-. ..+++... .++|++||+..
T Consensus       208 ~nY------~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  208 PNY------FCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             CCc------eeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            554      5566699999999 443332 2222211    2348899999953 34555554 47899998863

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.38  E-value=0.00019  Score=63.61  Aligned_cols=237  Identities=14%  Similarity=0.112  Sum_probs=129.2

Q ss_pred             cCCCCeEEEEe---------CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257           72 NPSGDDFVCST---------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (392)
Q Consensus        72 sp~~~~l~~~~---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  142 (392)
                      |||+++++...         ..+.+.|+|+++++.......        ...+....|||+|+.++... ++.|.+.+..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--------~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~   71 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--------PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLA   71 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--------ETTBSEEEE-SSSTEEEEEE-TTEEEEESST
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--------ccccccceeecCCCeeEEEe-cCceEEEECC
Confidence            57888777632         235688899888653221111        35778999999999999876 6789999987


Q ss_pred             CCceeecccCCC-----------------CcEEEEEecCCCCeEEEEcCC-Cc---------------------------
Q 016257          143 SLRIILDEPKAH-----------------KSVLDMDFSLDSEFLATTSTD-GS---------------------------  177 (392)
Q Consensus       143 ~~~~~~~~~~~~-----------------~~i~~i~~~~~~~~l~~~~~d-~~---------------------------  177 (392)
                      +++..+......                 +.-..+-||||+++|+....| ..                           
T Consensus        72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~  151 (353)
T PF00930_consen   72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKA  151 (353)
T ss_dssp             TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BT
T ss_pred             CCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCC
Confidence            775443222221                 122467899999998875322 11                           


Q ss_pred             --------EEEEECCCCeeeE-EEe---cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec-ccC
Q 016257          178 --------ARIWKTEDGVAWT-FLT---RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLR  244 (392)
Q Consensus       178 --------i~vwd~~~~~~~~-~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~  244 (392)
                              +.++|+.+++... ...   ......+..+.|.+++..+++..+--......+.+.|..++....... ...
T Consensus       152 G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~  231 (353)
T PF00930_consen  152 GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD  231 (353)
T ss_dssp             TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred             CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence                    2344554443321 111   123345778899999885333222222233456677776654432222 112


Q ss_pred             CCc---EEEEEC-CCC-CEEEEEeCCCc--EEEEecCCceeeeeeeccccCcceEE-EEEeeCCCeEE-EEeCC--CeEE
Q 016257          245 KPA---SVLSIS-LDG-KYLAMGSKDGD--ICVVDVKKMEINHWSKRLHLGTSIAL-VEFCPTQRVVL-TASKE--WGAM  313 (392)
Q Consensus       245 ~~v---~~~~~s-~~~-~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~-~~~~d--g~i~  313 (392)
                      ..+   ....+. +++ .++.....||.  |.+++..++...... .+  ...|.. +.|+++++.|+ ++..+  +.-.
T Consensus       232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT-~G--~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~  308 (353)
T PF00930_consen  232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLT-SG--DWEVTSILGWDEDNNRIYFTANGDNPGERH  308 (353)
T ss_dssp             SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS--S--SS-EEEEEEEECTSSEEEEEESSGGTTSBE
T ss_pred             cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccc-cC--ceeecccceEcCCCCEEEEEecCCCCCceE
Confidence            222   245554 555 44555556775  555566666644332 22  456644 77888877554 55443  3556


Q ss_pred             EEEeecC
Q 016257          314 ITKLTVP  320 (392)
Q Consensus       314 iw~~~~~  320 (392)
                      +|.++..
T Consensus       309 lY~v~~~  315 (353)
T PF00930_consen  309 LYRVSLD  315 (353)
T ss_dssp             EEEEETT
T ss_pred             EEEEEeC
Confidence            6666544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.38  E-value=0.00036  Score=62.04  Aligned_cols=244  Identities=14%  Similarity=0.058  Sum_probs=125.1

Q ss_pred             CeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccce-eeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 016257           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI-NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (392)
Q Consensus        65 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~  143 (392)
                      .|+.+.|.++...|++|...|.|.||.....+.-. ...          .+-....+.+-+      ..++.-.+-|+..
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~----------~~~~~~~~~~~~------~~~~~~~l~di~~   66 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQ----------PPDLDYNFRRFS------LNNSPGKLTDISD   66 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------------S--------GGGSS-SEEE-GG
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCC----------CcccCccccccc------ccCCCcceEEehh
Confidence            58899999999999999999999999987664221 000          011111111100      0011112222211


Q ss_pred             --------C-ceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec-------CCCcceEEEEecC
Q 016257          144 --------L-RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-------NSDEKIELCRFSK  207 (392)
Q Consensus       144 --------~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-------~~~~~v~~~~~~~  207 (392)
                              + .+..-+....++|++++.| |=.+++.|.++|.+.|.|+|....+..-..       .....++++.|..
T Consensus        67 r~~~~~~~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~v  145 (395)
T PF08596_consen   67 RAPPSLKEGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSV  145 (395)
T ss_dssp             G--TT-SEEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEE
T ss_pred             hCCcccccccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEE
Confidence                    1 1122223335789999997 445999999999999999998877665321       1234577787762


Q ss_pred             ---CCCcceEEEEEEeCCccEEEEEeCCC---ce----eeeeecccCCCcEEEE-ECCC-C-------------------
Q 016257          208 ---DGTKPFLFCTVQRGDKALLAVYDIST---WN----KIGHKRLLRKPASVLS-ISLD-G-------------------  256 (392)
Q Consensus       208 ---~~~~~~~~~~~~~~~d~~i~v~d~~~---~~----~~~~~~~~~~~v~~~~-~s~~-~-------------------  256 (392)
                         .+...-..+++.|...|.+.+|.+.-   +.    .......+..++..+. ++.+ |                   
T Consensus       146 m~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i  225 (395)
T PF08596_consen  146 MTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISI  225 (395)
T ss_dssp             EE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT---
T ss_pred             EecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCc
Confidence               22221233467888889999997641   11    1111123444554443 3211 1                   


Q ss_pred             -CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEe-----eCCCeEEEEeCCCeEEEEEeecCccccceee
Q 016257          257 -KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC-----PTQRVVLTASKEWGAMITKLTVPADWKEWQI  328 (392)
Q Consensus       257 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  328 (392)
                       .+++++ .+..++++...+.+........  ......+.+-     ..+..|++-..+|.++++.+...++....++
T Consensus       226 ~g~vVvv-Se~~irv~~~~~~k~~~K~~~~--~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l  300 (395)
T PF08596_consen  226 PGYVVVV-SESDIRVFKPPKSKGAHKSFDD--PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL  300 (395)
T ss_dssp             -EEEEEE--SSEEEEE-TT---EEEEE-SS---EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred             CcEEEEE-cccceEEEeCCCCcccceeecc--ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence             134444 4667999999888766654321  2233344452     3566889999999999999987665544433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.38  E-value=0.00011  Score=66.99  Aligned_cols=117  Identities=13%  Similarity=0.097  Sum_probs=87.0

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  142 (392)
                      ...|.--+++..+++++.|+..|.+++|+-..++.......      ...+.+..+..|++..++|.|+..|.|.++.+.
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~------~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~  106 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE------GATGITCVRSVSSVEYLVAAGTASGRVSVFQLN  106 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhccccc------CccceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence            34455555666788999999999999999877653222111      134566777888888889999999999999886


Q ss_pred             CCcee---ecc---cCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 016257          143 SLRII---LDE---PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED  185 (392)
Q Consensus       143 ~~~~~---~~~---~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~  185 (392)
                      ...+.   ...   ..|...|++++|++++..+++|...|+|.+-.+..
T Consensus       107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            53321   111   12345899999999999999999999999888876

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.37  E-value=0.00025  Score=63.91  Aligned_cols=178  Identities=16%  Similarity=0.107  Sum_probs=95.9

Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEE
Q 016257          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL  192 (392)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  192 (392)
                      -....+.++|+|+.++++ .||...++.....+...     .+.-....|.+.++ +|+-..+++|.++.--+.+....+
T Consensus        33 ~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i  105 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSI  105 (443)
T ss_dssp             S--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT---
T ss_pred             cCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEE
Confidence            346889999999998885 58888888743333221     23456788998554 666666888999743333333344


Q ss_pred             ecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEe
Q 016257          193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (392)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  272 (392)
                      ..+.  .+..+-.   |..     +...+ ++.|.+||..+++.+..+...  +|..+.|+++|.+++..+.+ .+.|++
T Consensus       106 ~~~~--~~~~If~---G~L-----L~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~  171 (443)
T PF04053_consen  106 KLPF--SVEKIFG---GNL-----LGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILK  171 (443)
T ss_dssp             --SS---EEEEE----SSS-----EEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred             cCCc--ccceEEc---CcE-----EEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence            4332  2444433   664     33333 448999999999988887653  38999999999999999865 588876


Q ss_pred             cCCc--------eeeeeeecccc-CcceEEEEEeeCCCeEEEEeCCCeEEE
Q 016257          273 VKKM--------EINHWSKRLHL-GTSIALVEFCPTQRVVLTASKEWGAMI  314 (392)
Q Consensus       273 ~~~~--------~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~i  314 (392)
                      ....        .....+...|. ...|.+..|..+  .++-.+.. +++-
T Consensus       172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY  219 (443)
T PF04053_consen  172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY  219 (443)
T ss_dssp             E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred             ecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence            5443        00000111121 467888899766  44444444 6666

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.35  E-value=0.00018  Score=65.54  Aligned_cols=246  Identities=14%  Similarity=0.166  Sum_probs=131.1

Q ss_pred             eCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 016257           60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (392)
Q Consensus        60 ~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~  139 (392)
                      .+..+.+..+..|++..++|.|+..|.|.++-+............ .....|...|++++|++|+..+++|...|+|..-
T Consensus        73 ~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t-~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~  151 (726)
T KOG3621|consen   73 EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT-PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLT  151 (726)
T ss_pred             cCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec-cccccCCceEEEEEecccccEEeecCCCceEEEE
Confidence            334667778888999999999999999999988774432222211 1122378899999999999999999999999988


Q ss_pred             eCCCCc----eeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCc-ceEEEEecCC---CCc
Q 016257          140 HWPSLR----IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE-KIELCRFSKD---GTK  211 (392)
Q Consensus       140 d~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~---~~~  211 (392)
                      .+.+..    ....+......|-.++... + +|+.++.- ...+++.+.++..+.-....++ .-...+|-|.   ++.
T Consensus       152 ~L~s~~~~~~~~q~il~~ds~IVQlD~~q-~-~LLVStl~-r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~  228 (726)
T KOG3621|consen  152 ELDSRQAFLSKSQEILSEDSEIVQLDYLQ-S-YLLVSTLT-RCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQK  228 (726)
T ss_pred             EechhhhhccccceeeccCcceEEeeccc-c-eehHhhhh-hhheeecchhHHHHhcCCCcCCccccceEEeeccccCCC
Confidence            887621    1112223334566666552 3 33333322 2345565543321111111111 0123344443   122


Q ss_pred             ceEEEEEEeCCccEEEEEeCCC-ceeeeeecc-------------cC-----------CCcEEEEECC----CCCEEEEE
Q 016257          212 PFLFCTVQRGDKALLAVYDIST-WNKIGHKRL-------------LR-----------KPASVLSISL----DGKYLAMG  262 (392)
Q Consensus       212 ~~~~~~~~~~~d~~i~v~d~~~-~~~~~~~~~-------------~~-----------~~v~~~~~s~----~~~~l~~~  262 (392)
                      ..    +.++.-| .++|..+- |+.+++...             +.           ..-..+.+..    .+..+.+-
T Consensus       229 ~~----IycaRPG-~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~  303 (726)
T KOG3621|consen  229 PQ----IYCARPG-LRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAW  303 (726)
T ss_pred             ce----EEEecCC-CceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEe
Confidence            21    2222222 45665432 222111100             00           0011111110    12233333


Q ss_pred             eCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257          263 SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       263 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      ++-| |+|+|.++.+.......   ...|..++-  +|+-|+.-..|+.+++..+...
T Consensus       304 te~G-iyv~d~~~~~v~l~se~---~~DI~dVs~--~~neiFvL~~d~~l~~~sv~s~  355 (726)
T KOG3621|consen  304 TEVG-IYVFDSNNSQVYLWSEG---GHDILDVSH--CGNEIFVLNLDRGLKVESVASR  355 (726)
T ss_pred             ecce-EEEEEeccceEEEeecC---CCceeEEee--cCceEEEEecCCceeEEEeehh
Confidence            4344 88999888877665433   335655554  5566667777777777766533

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.35  E-value=2.7e-07  Score=82.28  Aligned_cols=201  Identities=15%  Similarity=0.232  Sum_probs=129.9

Q ss_pred             CCCeEEEEecCC--CCEEEEEeCCCcEEEEeCCCCce--eecccCCCCcEEEEEecC-CCCeEEEEc----CCCcEEEEE
Q 016257          112 AGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSL-DSEFLATTS----TDGSARIWK  182 (392)
Q Consensus       112 ~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~i~~~~-~~~~l~~~~----~d~~i~vwd  182 (392)
                      ...+.|++++-+  ...+++|..+|.|.+-..+...-  .....++...+++++|++ |.+.||.|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            346677777653  34788899999999988764322  223445556899999998 566677663    356799999


Q ss_pred             CCCC--eee--EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECC-CCC
Q 016257          183 TEDG--VAW--TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL-DGK  257 (392)
Q Consensus       183 ~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~  257 (392)
                      +.++  .+.  ..+.........+++|..+.+.     +.+|.....+.++|++... ..........+..+.++| .+.
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~kl-----vlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~n  209 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKL-----VLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPN  209 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcch-----hhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCC
Confidence            9876  222  2222222334568888877775     6777778899999998422 112222234566778888 778


Q ss_pred             EEEEEeCCCcEEEEe-cCCceee-eeeeccc--cCcceEEEEEeeCCC-eEEEEeC-CCeEEEEEeec
Q 016257          258 YLAMGSKDGDICVVD-VKKMEIN-HWSKRLH--LGTSIALVEFCPTQR-VVLTASK-EWGAMITKLTV  319 (392)
Q Consensus       258 ~l~~~~~dg~i~iwd-~~~~~~~-~~~~~~~--~~~~i~~~~~s~~~~-~l~~~~~-dg~i~iw~~~~  319 (392)
                      ++++-. ||.|.+|| ..+-+.+ ..+....  ....+..++|.|... .+++... .++|+++++..
T Consensus       210 Y~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  210 YFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             ceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            887766 89999999 4443322 2221110  023489999999654 4555554 47888888863

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.35  E-value=0.00072  Score=62.66  Aligned_cols=235  Identities=11%  Similarity=0.094  Sum_probs=135.7

Q ss_pred             CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEe---------CCCcEEEEeCCCC
Q 016257           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGG---------VDGHLRIMHWPSL  144 (392)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~---------~dg~i~i~d~~~~  144 (392)
                      ..++.++.++.|+-+|.++++...+.......  .   .-..+.-+|  .+..++.++         .++.+..+|.+++
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~--~---~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG  185 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQV--P---PGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETG  185 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCc--C---cceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCC
Confidence            57788888999999999998876655432110  0   000111112  123555554         3678899999999


Q ss_pred             ceeecccCCCC--------------------cE-EEEEecCCCCeEEEEcCCC------------------cEEEEECCC
Q 016257          145 RIILDEPKAHK--------------------SV-LDMDFSLDSEFLATTSTDG------------------SARIWKTED  185 (392)
Q Consensus       145 ~~~~~~~~~~~--------------------~i-~~i~~~~~~~~l~~~~~d~------------------~i~vwd~~~  185 (392)
                      +.+.+......                    .+ ...++.+.+..++.++.++                  .+.-+|.++
T Consensus       186 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t  265 (488)
T cd00216         186 KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT  265 (488)
T ss_pred             ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence            87765433211                    01 1234455567778777665                  699999999


Q ss_pred             CeeeEEEecCCCc-----ceEEEEec----CCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCC
Q 016257          186 GVAWTFLTRNSDE-----KIELCRFS----KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG  256 (392)
Q Consensus       186 ~~~~~~~~~~~~~-----~v~~~~~~----~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~  256 (392)
                      ++..-..+.....     ......+.    -++...  ..++.++.+|.+...|.++++.+-.....   ...++.+|  
T Consensus       266 G~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~--~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--  338 (488)
T cd00216         266 GKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV--PAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--  338 (488)
T ss_pred             CCEEEEeeCCCCCCcccccCCCCeEEeccccCCCee--EEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--
Confidence            9988776532210     00011111    123211  12577888999999999999887544321   11233444  


Q ss_pred             CEEEEE------------------eCCCcEEEEecCCceeeeeeeccccC------cceEEEEEeeCCCeEEEEeCCCeE
Q 016257          257 KYLAMG------------------SKDGDICVVDVKKMEINHWSKRLHLG------TSIALVEFCPTQRVVLTASKEWGA  312 (392)
Q Consensus       257 ~~l~~~------------------~~dg~i~iwd~~~~~~~~~~~~~~~~------~~i~~~~~s~~~~~l~~~~~dg~i  312 (392)
                      ..++.+                  ..+|.+.-.|+.+++.+-........      .+...-.....+..|+.++.||.+
T Consensus       339 ~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l  418 (488)
T cd00216         339 GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYF  418 (488)
T ss_pred             ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeE
Confidence            233332                  23577888899988866554322000      111111112255788899999999


Q ss_pred             EEEEeecCcc
Q 016257          313 MITKLTVPAD  322 (392)
Q Consensus       313 ~iw~~~~~~~  322 (392)
                      +.+|..+++.
T Consensus       419 ~ald~~tG~~  428 (488)
T cd00216         419 RAFDATTGKE  428 (488)
T ss_pred             EEEECCCCce
Confidence            9998877654

The alignment model contains an 8-bladed beta-propeller.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.35  E-value=0.0019  Score=57.85  Aligned_cols=241  Identities=11%  Similarity=0.144  Sum_probs=158.8

Q ss_pred             CeeEEEEcCCCCeEEEEeC-CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CCCcEEEEeCC
Q 016257           65 DPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWP  142 (392)
Q Consensus        65 ~v~~~~~sp~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~  142 (392)
                      ....+...|++..++.... ...+...+.. .........     . .......++.++.+..++... .++.|.+.|..
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~-----~-g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~  104 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLS-----V-GGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTA  104 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeecc-----C-CCccccceeeCCCCCeEEEecCCCCeEEEEcCc
Confidence            5667788888865554432 2234444443 111111000     0 003346788888888555544 45889999987


Q ss_pred             CCceeecccCCCCcEEEEEecCCCCeEEEEcC---CCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEE
Q 016257          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (392)
Q Consensus       143 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (392)
                      +.+......... ....++++|+++.+..+..   ++++.+.|-.+.+......... .+ ..++++|++...    ..+
T Consensus       105 ~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~v----yv~  177 (381)
T COG3391         105 TNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKV----YVT  177 (381)
T ss_pred             ccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeE----EEE
Confidence            766654443333 5678999999988777665   6889999999888888855433 23 899999999973    344


Q ss_pred             eCCccEEEEEeCCCceeee-e---ecccCCCcEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeeccccCcceE
Q 016257          220 RGDKALLAVYDISTWNKIG-H---KRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTSIA  292 (392)
Q Consensus       220 ~~~d~~i~v~d~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~i~  292 (392)
                      ...++.|.+.|........ .   .......-..+.++|+|.++++....   +.+...|..++............ ...
T Consensus       178 ~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~  256 (381)
T COG3391         178 NSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APR  256 (381)
T ss_pred             ecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCC
Confidence            4678999999987655542 1   11122344578999999977766544   58999999998877652222212 567


Q ss_pred             EEEEeeCCCeEEEEeCC-CeEEEEEeecC
Q 016257          293 LVEFCPTQRVVLTASKE-WGAMITKLTVP  320 (392)
Q Consensus       293 ~~~~s~~~~~l~~~~~d-g~i~iw~~~~~  320 (392)
                      .+..+|+|+.+.+.... +.+.+-+....
T Consensus       257 ~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         257 GVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             ceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            78999999988877544 77777776654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.29  E-value=3.6e-05  Score=68.99  Aligned_cols=173  Identities=16%  Similarity=0.063  Sum_probs=109.5

Q ss_pred             cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEc---CC-CcEEEEECCCCeeeEEEecCCCcceEEEEecCCCC
Q 016257          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS---TD-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (392)
Q Consensus       135 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~d-~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (392)
                      .+.+-|.+ +.....+......+..-.|+|++..++..+   .. ..+.++++.+++.......  ...-...+|+|||+
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~--~g~~~~P~fspDG~  250 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF--NGNNGAPAFSPDGS  250 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc--CCccCCccCCCCCC
Confidence            34444443 444344444455677789999998766542   22 3599999998877666552  22446778999998


Q ss_pred             cceEEEEEEeCC--ccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeC-CC--cEEEEecCCceeeeeeecc
Q 016257          211 KPFLFCTVQRGD--KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK-DG--DICVVDVKKMEINHWSKRL  285 (392)
Q Consensus       211 ~~~~~~~~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~  285 (392)
                      .+    +++...  .-.|+++|+......+ +....+.-+.-.|+|||++++..+. .|  .|.++|++.....+.....
T Consensus       251 ~l----~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~  325 (425)
T COG0823         251 KL----AFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG  325 (425)
T ss_pred             EE----EEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC
Confidence            73    333333  4457778888766433 4443444457899999999887764 34  3777788777765444322


Q ss_pred             ccCcceEEEEEeeCCCeEEEEeCC-Ce--EEEEEee
Q 016257          286 HLGTSIALVEFCPTQRVVLTASKE-WG--AMITKLT  318 (392)
Q Consensus       286 ~~~~~i~~~~~s~~~~~l~~~~~d-g~--i~iw~~~  318 (392)
                         +.-....|+|||++|+..+.. |.  |.+.++.
T Consensus       326 ---~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~  358 (425)
T COG0823         326 ---GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA  358 (425)
T ss_pred             ---CCCcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence               222278899999998877743 44  4444443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.28  E-value=0.0016  Score=60.76  Aligned_cols=200  Identities=10%  Similarity=0.054  Sum_probs=114.1

Q ss_pred             CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCC----CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecc
Q 016257           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA----GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE  150 (392)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  150 (392)
                      +..|++++.++.|+-+|..+++...+............    ..-..+++  .+..++.++.|+.+.-.|.++|+.+.+.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            44677777788888889888876665433211000000    00011222  2346777888999999999999987654


Q ss_pred             cCCCC-cEEEEEecC--CCCeEEEEc------CCCcEEEEECCCCeeeEEEecCCCc-----------------------
Q 016257          151 PKAHK-SVLDMDFSL--DSEFLATTS------TDGSARIWKTEDGVAWTFLTRNSDE-----------------------  198 (392)
Q Consensus       151 ~~~~~-~i~~i~~~~--~~~~l~~~~------~d~~i~vwd~~~~~~~~~~~~~~~~-----------------------  198 (392)
                      ..... .-..+.-+|  .+..++.+.      .+|.|..+|.++++.+-.+......                       
T Consensus       147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~  226 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD  226 (527)
T ss_pred             ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence            42211 101111222  123455443      2688999999999887665432110                       


Q ss_pred             -------ce-EEEEecCCCCcceEEEEEEeC----------C----ccEEEEEeCCCceeeeeecccCCCc---------
Q 016257          199 -------KI-ELCRFSKDGTKPFLFCTVQRG----------D----KALLAVYDISTWNKIGHKRLLRKPA---------  247 (392)
Q Consensus       199 -------~v-~~~~~~~~~~~~~~~~~~~~~----------~----d~~i~v~d~~~~~~~~~~~~~~~~v---------  247 (392)
                             .+ ..+++.|....+|   +-++.          .    ...|.-.|+++++..-.++.....+         
T Consensus       227 ~~~~gg~~~W~~~s~D~~~~lvy---~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p  303 (527)
T TIGR03075       227 AWKTGGGATWGTGSYDPETNLIY---FGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM  303 (527)
T ss_pred             ccccCCCCccCceeEcCCCCeEE---EeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence                   00 0234444444322   23322          0    1267788999998865554322221         


Q ss_pred             EEEEECCCCC---EEEEEeCCCcEEEEecCCceee
Q 016257          248 SVLSISLDGK---YLAMGSKDGDICVVDVKKMEIN  279 (392)
Q Consensus       248 ~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~  279 (392)
                      .-+.+..+|+   .++.+..+|.+++.|..+++.+
T Consensus       304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            2233334665   7889999999999999999875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.26  E-value=0.00039  Score=55.86  Aligned_cols=139  Identities=17%  Similarity=0.101  Sum_probs=93.1

Q ss_pred             CCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCC
Q 016257          166 SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK  245 (392)
Q Consensus       166 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~  245 (392)
                      ..+++.|+..+.+.-.|..+++....-...  ..+.+-+.- -|..     ++.+...+.+++.+.+++.....+...+.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-vgdf-----VV~GCy~g~lYfl~~~tGs~~w~f~~~~~   94 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-VGDF-----VVLGCYSGGLYFLCVKTGSQIWNFVILET   94 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-ECCE-----EEEEEccCcEEEEEecchhheeeeeehhh
Confidence            356778888899999999988876543322  234333322 2343     68889999999999999977766655443


Q ss_pred             CcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEE
Q 016257          246 PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI  314 (392)
Q Consensus       246 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  314 (392)
                      --......+++..+.+|+.|++.+..|.++...+...+- . .+.-.+.+..|-...|..+...|.+.-
T Consensus        95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc-g-G~~f~sP~i~~g~~sly~a~t~G~vla  161 (354)
T KOG4649|consen   95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC-G-GGTFVSPVIAPGDGSLYAAITAGAVLA  161 (354)
T ss_pred             hccceEEcCCCceEEEecCCCcEEEecccccceEEeccc-C-CceeccceecCCCceEEEEeccceEEE
Confidence            333456678999999999999999999999887776532 2 334445556663334444444555443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.23  E-value=0.0019  Score=53.31  Aligned_cols=200  Identities=12%  Similarity=0.128  Sum_probs=109.5

Q ss_pred             eeCCCCCeeEEEEcCCCCe-EEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEE
Q 016257           59 FDESEGDPMTIAVNPSGDD-FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (392)
Q Consensus        59 ~~~h~~~v~~~~~sp~~~~-l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  137 (392)
                      +.+-...+..++|+|+.+. +++....+.|..++. +++...+...      ...+....+++..++.++++--.++.+.
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l------~g~~D~EgI~y~g~~~~vl~~Er~~~L~   89 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPL------DGFGDYEGITYLGNGRYVLSEERDQRLY   89 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-------SS-SSEEEEEE-STTEEEEEETTTTEEE
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeC------CCCCCceeEEEECCCEEEEEEcCCCcEE
Confidence            3444556999999998664 555566676666664 3343333321      1235678899988887777665688999


Q ss_pred             EEeCCCCc----e--ee--c--cc-CCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCC---CeeeEEEe-------cCC
Q 016257          138 IMHWPSLR----I--IL--D--EP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED---GVAWTFLT-------RNS  196 (392)
Q Consensus       138 i~d~~~~~----~--~~--~--~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~---~~~~~~~~-------~~~  196 (392)
                      ++++....    .  ..  .  .. .+...+..++|+|.++.|+.+-+..-..+|.++.   ........       ...
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (248)
T PF06977_consen   90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF  169 (248)
T ss_dssp             EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred             EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence            99884321    1  01  1  11 1234689999999888887777766677777653   22211111       111


Q ss_pred             CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC---------CCcEEEEECCCCCEEEEEeCCCc
Q 016257          197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---------KPASVLSISLDGKYLAMGSKDGD  267 (392)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~dg~  267 (392)
                      ...+.+++++|....+    ++.+.....|..+| .+++.+..+....         .....++|.++|++. ..++-+.
T Consensus       170 ~~d~S~l~~~p~t~~l----liLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpNl  243 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHL----LILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPNL  243 (248)
T ss_dssp             SS---EEEEETTTTEE----EEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETTTE
T ss_pred             eccccceEEcCCCCeE----EEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCCce
Confidence            2247889999987764    46688889999999 5566655443322         246789999998554 4455554


Q ss_pred             EEEE
Q 016257          268 ICVV  271 (392)
Q Consensus       268 i~iw  271 (392)
                      .++|
T Consensus       244 fy~f  247 (248)
T PF06977_consen  244 FYRF  247 (248)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            4444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=1.1e-05  Score=72.17  Aligned_cols=94  Identities=17%  Similarity=0.185  Sum_probs=79.4

Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEE-EEEecCCCCeEEEEcCCCcEEEEECCCCeeeEE
Q 016257          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF  191 (392)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  191 (392)
                      ..+.-+.|+|.-.++|.+..+|.+.+..+. .+.+..+..+...++ +++|.|||+.|+.|-.||+|++.|++++..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            467889999999999999999999999987 666667775666666 999999999999999999999999999988877


Q ss_pred             EecCCCcceEEEEecC
Q 016257          192 LTRNSDEKIELCRFSK  207 (392)
Q Consensus       192 ~~~~~~~~v~~~~~~~  207 (392)
                      ........|.++-|.+
T Consensus       100 ~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDR  115 (665)
T ss_pred             cccccccchheeeccc
Confidence            5444455788888874

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.17  E-value=8.5e-05  Score=70.63  Aligned_cols=139  Identities=17%  Similarity=0.079  Sum_probs=95.1

Q ss_pred             CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcc--eEEEEEEeCCccEEEEEeCCCce-eeeeec----ccCCC
Q 016257          174 TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP--FLFCTVQRGDKALLAVYDISTWN-KIGHKR----LLRKP  246 (392)
Q Consensus       174 ~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~----~~~~~  246 (392)
                      ....++-.|++.|+.+..+..+...+|..+  .|+.+.-  ----.+.|-.++.+..||.|-.. .+....    .....
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~  579 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN  579 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence            457899999999999999988766545444  4432100  00004667778889999998642 211111    22446


Q ss_pred             cEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          247 ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       247 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      .+|++-+.+| +||+|+.+|.||+||- .++..+....+- +.+|..|..+.||++|++.+.. .+.+.+..
T Consensus       580 Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~l-G~pI~~iDvt~DGkwilaTc~t-yLlLi~t~  647 (794)
T PF08553_consen  580 FSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGL-GDPIIGIDVTADGKWILATCKT-YLLLIDTL  647 (794)
T ss_pred             ceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCC-CCCeeEEEecCCCcEEEEeecc-eEEEEEEe
Confidence            7788777666 8899999999999994 444333333444 7899999999999999887755 67776653

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.17  E-value=0.0077  Score=57.68  Aligned_cols=153  Identities=13%  Similarity=0.203  Sum_probs=101.0

Q ss_pred             cEEEEEecCC-CCeEEEEc----------CCCcEEEEECCCCeeeEEEec-CCCcceEEEEecCCCCcceEEEEEEeCCc
Q 016257          156 SVLDMDFSLD-SEFLATTS----------TDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (392)
Q Consensus       156 ~i~~i~~~~~-~~~l~~~~----------~d~~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (392)
                      .|.++.|..| +.++++|+          ..|.|.+|....++.++.... ...+.+.++.-- +|+       +.++-.
T Consensus       776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngk-------llA~In  847 (1096)
T KOG1897|consen  776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGK-------LLAGIN  847 (1096)
T ss_pred             eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCe-------EEEecC
Confidence            3555668777 66777765          247788888877444433322 122234433322 233       445556


Q ss_pred             cEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecC--CceeeeeeeccccCcceEEEEEeeCCC
Q 016257          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK--KMEINHWSKRLHLGTSIALVEFCPTQR  301 (392)
Q Consensus       224 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~i~~~~~s~~~~  301 (392)
                      ..|++|+..+.+.++.-..+..++..+...-.|..+++|.--+.+.+...+  .+.........+ ....+++.+-.+ .
T Consensus       848 ~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~-p~Wmtaveil~~-d  925 (1096)
T KOG1897|consen  848 QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYN-PNWMTAVEILDD-D  925 (1096)
T ss_pred             cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhC-ccceeeEEEecC-c
Confidence            789999999887777767778889999999999999999877777665544  444555444455 777888887644 4


Q ss_pred             eEEEEeCCCeEEEEEee
Q 016257          302 VVLTASKEWGAMITKLT  318 (392)
Q Consensus       302 ~l~~~~~dg~i~iw~~~  318 (392)
                      .++.+..+|.+.+-..+
T Consensus       926 ~ylgae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  926 TYLGAENSGNLFTVRKD  942 (1096)
T ss_pred             eEEeecccccEEEEEec
Confidence            55566677888777665

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.15  E-value=0.0045  Score=56.39  Aligned_cols=196  Identities=16%  Similarity=0.117  Sum_probs=107.0

Q ss_pred             eEEEEecCCCCEEEEE-eCCC----cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCC-----------CcE
Q 016257          115 QKCLSFSVDGSRFAAG-GVDG----HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----------GSA  178 (392)
Q Consensus       115 v~~~~~s~~~~~l~~~-~~dg----~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----------~~i  178 (392)
                      +....+||||++++.+ +..|    .++++|+++++.+....... ....+.|.++++.|+....+           ..|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            3467899999998865 3333    59999999997654322211 12339999998877665432           237


Q ss_pred             EEEECCCCeee--EEEecCCCcc-eEEEEecCCCCcceEEEEEEeCCc-cEEEEEeCCCc----eeeeeecccCCCc-EE
Q 016257          179 RIWKTEDGVAW--TFLTRNSDEK-IELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDISTW----NKIGHKRLLRKPA-SV  249 (392)
Q Consensus       179 ~vwd~~~~~~~--~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~d-~~i~v~d~~~~----~~~~~~~~~~~~v-~~  249 (392)
                      +.|.+.+....  ..+....... ...+..+++++++++  ....+.+ ..+.+.|+...    .....+......+ ..
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i--~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~  282 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFI--SSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY  282 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEE--EEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEE--EEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence            88888766443  3333333323 567889999986432  3444455 78999999874    2222333223333 33


Q ss_pred             EEECCCCCEEEEEe---CCCcEEEEecCCcee---eeeeeccccCc--ceEEEEEeeCCC-eEEEEeCCC--eEEEEEee
Q 016257          250 LSISLDGKYLAMGS---KDGDICVVDVKKMEI---NHWSKRLHLGT--SIALVEFCPTQR-VVLTASKEW--GAMITKLT  318 (392)
Q Consensus       250 ~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~---~~~~~~~~~~~--~i~~~~~s~~~~-~l~~~~~dg--~i~iw~~~  318 (392)
                      +... .+.+++...   .++.|.-.++.....   ...+ ..+ ..  .+..+..  .+. +++....++  .|+++++.
T Consensus       283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l-~~~-~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVL-IPE-DEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEE-E---SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred             EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEE-cCC-CCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence            3333 333443332   235677778776552   2122 233 33  4555554  444 445555565  44555555

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.14  E-value=0.0053  Score=55.94  Aligned_cols=222  Identities=16%  Similarity=0.148  Sum_probs=116.5

Q ss_pred             eeEEEEcCCCCeEEEE-eCCC----eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC------
Q 016257           66 PMTIAVNPSGDDFVCS-TTNG----GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG------  134 (392)
Q Consensus        66 v~~~~~sp~~~~l~~~-~~d~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg------  134 (392)
                      +....++|+++++|.+ +..|    .++++|+.+++.........        ....+.|.+|++.|+....+.      
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--------~~~~~~W~~d~~~~~y~~~~~~~~~~~  197 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--------KFSSVSWSDDGKGFFYTRFDEDQRTSD  197 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--------ESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--------ccceEEEeCCCCEEEEEEeCccccccc
Confidence            3367889999998865 3333    59999999886544332211        113499999988877665332      


Q ss_pred             -----cEEEEeCCCCcee--ecccCCCC-c-EEEEEecCCCCeEEEEcC---C-CcEEEEECCCC----eeeEEEecCCC
Q 016257          135 -----HLRIMHWPSLRII--LDEPKAHK-S-VLDMDFSLDSEFLATTST---D-GSARIWKTEDG----VAWTFLTRNSD  197 (392)
Q Consensus       135 -----~i~i~d~~~~~~~--~~~~~~~~-~-i~~i~~~~~~~~l~~~~~---d-~~i~vwd~~~~----~~~~~~~~~~~  197 (392)
                           .|+.|.+.+...-  ..+..... . ...+..++|+++|+....   + ..+.+.++..+    .....+.....
T Consensus       198 ~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~  277 (414)
T PF02897_consen  198 SGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED  277 (414)
T ss_dssp             CGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred             CCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence                 3777887665421  22222222 2 678889999998775432   2 34788888764    23344443333


Q ss_pred             cceEEEEecCCCCcceEEEEEE--eCCccEEEEEeCCCcee---eeeecccCCCcEEEEECCCCCEEEEE-eCCC--cEE
Q 016257          198 EKIELCRFSKDGTKPFLFCTVQ--RGDKALLAVYDISTWNK---IGHKRLLRKPASVLSISLDGKYLAMG-SKDG--DIC  269 (392)
Q Consensus       198 ~~v~~~~~~~~~~~~~~~~~~~--~~~d~~i~v~d~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg--~i~  269 (392)
                      +....+...  +..++   +.+  ....+.|...++.....   ...+..+...+.--.+...+.+|+.. ..++  .|+
T Consensus       278 ~~~~~v~~~--~~~~y---i~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~  352 (414)
T PF02897_consen  278 GVEYYVDHH--GDRLY---ILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLR  352 (414)
T ss_dssp             S-EEEEEEE--TTEEE---EEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred             ceEEEEEcc--CCEEE---EeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEE
Confidence            333334333  33322   233  23457788888876552   22333334432323333344455544 3443  588


Q ss_pred             EEecCCceeeeeeeccccCcceEEEEEeeCCC
Q 016257          270 VVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (392)
Q Consensus       270 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  301 (392)
                      ++++..+.....+.... .+.|..+...+++.
T Consensus       353 v~~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~  383 (414)
T PF02897_consen  353 VYDLDDGKESREIPLPE-AGSVSGVSGDFDSD  383 (414)
T ss_dssp             EEETT-TEEEEEEESSS-SSEEEEEES-TT-S
T ss_pred             EEECCCCcEEeeecCCc-ceEEeccCCCCCCC
Confidence            99998333333332222 44556655555544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.13  E-value=0.0055  Score=55.27  Aligned_cols=207  Identities=14%  Similarity=0.142  Sum_probs=106.6

Q ss_pred             eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccC--CCCcEEE----
Q 016257           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK--AHKSVLD----  159 (392)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~----  159 (392)
                      .|.||+..... ...+..      .+ +.+.++.|+.+.+ |++...||.+++||+.... ...+..  ....|..    
T Consensus        62 ~I~iys~sG~l-l~~i~w------~~-~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~  131 (410)
T PF04841_consen   62 SIQIYSSSGKL-LSSIPW------DS-GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIF  131 (410)
T ss_pred             EEEEECCCCCE-eEEEEE------CC-CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCce-eechhhhccccCccccccc
Confidence            48888765543 333222      12 6899999998654 5555789999999986332 111111  1112222    


Q ss_pred             -EEecCCCCeEEEEcCCCcEEEEECCCCe-eeEEEecCCCc--------ceEE-EEecCCCCcceEEEEEEeCCccEEEE
Q 016257          160 -MDFSLDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDE--------KIEL-CRFSKDGTKPFLFCTVQRGDKALLAV  228 (392)
Q Consensus       160 -i~~~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~--------~v~~-~~~~~~~~~~~~~~~~~~~~d~~i~v  228 (392)
                       ..+..+|  ++.-..++.+.+..--... ..+.+......        .... ..++.+...     .+....++.+.+
T Consensus       132 ~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~-----~i~~~~g~~i~~  204 (410)
T PF04841_consen  132 AIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVV-----EILLANGETIYI  204 (410)
T ss_pred             ccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcce-----EEEEecCCEEEE
Confidence             2333344  3333344555444322211 11111110000        0000 122223222     122223344553


Q ss_pred             EeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeC
Q 016257          229 YDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK  308 (392)
Q Consensus       229 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  308 (392)
                      .+-...+.   + ...+++..+++||+|+++|.-..+|.+.+.+.+-.+....+.... ......+.|.-+...++.-  
T Consensus       205 i~~~~~~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~-~~~p~~~~WCG~dav~l~~--  277 (410)
T PF04841_consen  205 IDENSFKQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS-KSPPKQMAWCGNDAVVLSW--  277 (410)
T ss_pred             EEcccccc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCc-CCCCcEEEEECCCcEEEEe--
Confidence            33322111   1 124689999999999999999999999999876665555543332 5677888897665443333  


Q ss_pred             CCeEEEEE
Q 016257          309 EWGAMITK  316 (392)
Q Consensus       309 dg~i~iw~  316 (392)
                      ...+.+..
T Consensus       278 ~~~l~lvg  285 (410)
T PF04841_consen  278 EDELLLVG  285 (410)
T ss_pred             CCEEEEEC
Confidence            33555544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.11  E-value=0.0025  Score=52.15  Aligned_cols=241  Identities=13%  Similarity=0.074  Sum_probs=134.6

Q ss_pred             CeeEEEEcCCCC-eEEEEeCCCe-EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC-----CcEE
Q 016257           65 DPMTIAVNPSGD-DFVCSTTNGG-CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLR  137 (392)
Q Consensus        65 ~v~~~~~sp~~~-~l~~~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~  137 (392)
                      .-..+.|+|... -++.+-.-|+ ..++|....+........+-.   |  .--.-.|||||.+|+..-.|     |.|-
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R---H--fyGHGvfs~dG~~LYATEndfd~~rGViG  143 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR---H--FYGHGVFSPDGRLLYATENDFDPNRGVIG  143 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCc---e--eecccccCCCCcEEEeecCCCCCCCceEE
Confidence            444678888543 5666666665 567888777655444332211   1  11234799999998875433     7799


Q ss_pred             EEeCCCC-ceeecccCCCCcEEEEEecCCCCeEEEEcC------------------CCcEEEEECCCCeeeEEEecC---
Q 016257          138 IMHWPSL-RIILDEPKAHKSVLDMDFSLDSEFLATTST------------------DGSARIWKTEDGVAWTFLTRN---  195 (392)
Q Consensus       138 i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------------------d~~i~vwd~~~~~~~~~~~~~---  195 (392)
                      |||.+.+ +.+.++..+.-.-..+.|.+||+.++.+..                  .-++.+.|..++..+.+...+   
T Consensus       144 vYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l  223 (366)
T COG3490         144 VYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL  223 (366)
T ss_pred             EEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh
Confidence            9998754 334444555446788999999999887742                  012344444445444332211   


Q ss_pred             CCcceEEEEecCCCCcceEEEEEEeCCcc-EEEEEeCCCceeeeeec-------ccCCCcEEEEECCCCCEEEEEe-CCC
Q 016257          196 SDEKIELCRFSKDGTKPFLFCTVQRGDKA-LLAVYDISTWNKIGHKR-------LLRKPASVLSISLDGKYLAMGS-KDG  266 (392)
Q Consensus       196 ~~~~v~~~~~~~~~~~~~~~~~~~~~~d~-~i~v~d~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~-~dg  266 (392)
                      +...++.++..+||...+ .|-.-+..+. --.+=-...++++..+.       .....|-+++.+.+..+++..+ ..+
T Consensus       224 ~~lSiRHld~g~dgtvwf-gcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN  302 (366)
T COG3490         224 RQLSIRHLDIGRDGTVWF-GCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGN  302 (366)
T ss_pred             hhcceeeeeeCCCCcEEE-EEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCC
Confidence            223577788888887411 1111111111 11111112222222221       1234567788887666666555 455


Q ss_pred             cEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEe
Q 016257          267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (392)
Q Consensus       267 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  317 (392)
                      ...+||..++.+......    .....++  +...-++..+.+|.+.++.-
T Consensus       303 ~~vi~da~tG~vv~~a~l----~daaGva--~~~~gf~vssg~G~~~~~s~  347 (366)
T COG3490         303 RAVIWDAATGAVVSEAAL----PDAAGVA--AAKGGFAVSSGQGRIIFYSR  347 (366)
T ss_pred             eEEEEEcCCCcEEecccc----cccccce--eccCceEEecCCceEEeccc
Confidence            688999999998765321    1222333  34445667777888888743

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.11  E-value=0.0023  Score=54.69  Aligned_cols=229  Identities=12%  Similarity=0.131  Sum_probs=123.8

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEE----------
Q 016257          123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL----------  192 (392)
Q Consensus       123 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~----------  192 (392)
                      .++.|+.|+.+| +.+++........... ....|..+...|+-+.+++-+ |+.++++++..-......          
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence            577899999888 9999983322222221 223499999999877766665 599999998764433311          


Q ss_pred             ---ecCCCcceEEEE-ecCCCCcceEEEEEEeCCccEEEEEeCCCc-----eeeeeecccCCCcEEEEECCCCCEEEEEe
Q 016257          193 ---TRNSDEKIELCR-FSKDGTKPFLFCTVQRGDKALLAVYDISTW-----NKIGHKRLLRKPASVLSISLDGKYLAMGS  263 (392)
Q Consensus       193 ---~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  263 (392)
                         .......+...+ -........    +.......|.+|.....     +..+.+.. ...+.+++|.  ++.++.|.
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~----L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~  155 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRR----LCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGT  155 (275)
T ss_pred             ccccccccCCeeEEeeccccccceE----EEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEe
Confidence               111111233333 112222111    22222347887776542     23334333 4678899998  56777777


Q ss_pred             CCCcEEEEecCCceeeeeeeccc----------cCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccc---cceeeee
Q 016257          264 KDGDICVVDVKKMEINHWSKRLH----------LGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADW---KEWQIYS  330 (392)
Q Consensus       264 ~dg~i~iwd~~~~~~~~~~~~~~----------~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~  330 (392)
                      .++ ..+.|+.++..........          ...++..+.. +++.+|++-  |..-.+-+.......   -.|..  
T Consensus       156 ~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~--  229 (275)
T PF00780_consen  156 SKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSS--  229 (275)
T ss_pred             CCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCCcCcccEEEcCC--
Confidence            554 8899999776554432111          0123444443 345666643  323333333322111   12322  


Q ss_pred             eeeeeeeeceEEEEeeecceeeeecccccccccCCCCc
Q 016257          331 LLLALFLASAVVFYIFFENSDSFWNFPVARNQHGGPKI  368 (392)
Q Consensus       331 ~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~p~~  368 (392)
                      .+......... +.+..++.|.+|++.+++-++..+..
T Consensus       230 ~p~~~~~~~py-li~~~~~~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  230 APQSVAYSSPY-LIAFSSNSIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             chhEEEEECCE-EEEECCCEEEEEECcCCcEEEEEECC
Confidence            22222223333 33455677999999999876655543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.06  E-value=0.0012  Score=57.76  Aligned_cols=175  Identities=10%  Similarity=0.114  Sum_probs=104.1

Q ss_pred             cEEEEeCCCCceeecccCCC-CcEEEEE---ecCC----CCeEEEEcC----------CCcEEEEECCCC-----eeeEE
Q 016257          135 HLRIMHWPSLRIILDEPKAH-KSVLDMD---FSLD----SEFLATTST----------DGSARIWKTEDG-----VAWTF  191 (392)
Q Consensus       135 ~i~i~d~~~~~~~~~~~~~~-~~i~~i~---~~~~----~~~l~~~~~----------d~~i~vwd~~~~-----~~~~~  191 (392)
                      .|++.|..+.+.+..+.-.. ..+.+++   +..+    ..+|++|+.          .|.|.++++...     +....
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            57888887776654433222 2344443   4332    456776642          288999999884     22222


Q ss_pred             EecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce-eeeeec-ccCCCcEEEEECCCCCEEEEEeCCCcEE
Q 016257          192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKR-LLRKPASVLSISLDGKYLAMGSKDGDIC  269 (392)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~  269 (392)
                      ......++|++++-- ++.       +..+..+.|.+|++...+ ....-. .....+.++...  ++++++|.....+.
T Consensus        83 ~~~~~~g~V~ai~~~-~~~-------lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~  152 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF-NGR-------LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVS  152 (321)
T ss_dssp             EEEEESS-EEEEEEE-TTE-------EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEE
T ss_pred             EEEeecCcceEhhhh-CCE-------EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEE
Confidence            223345678888766 222       222224789999998776 322211 122355555544  66999999888888


Q ss_pred             EEecCC-ceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          270 VVDVKK-MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       270 iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      ++..+. ...+..+........++++.|-++++.++.+..+|.+.++..+.
T Consensus       153 ~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  153 LLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             EEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            886553 23222222222256789999987778999999999999999873

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.04  E-value=0.00092  Score=62.76  Aligned_cols=157  Identities=14%  Similarity=0.110  Sum_probs=94.8

Q ss_pred             CcEEEEEecCCCCeEEEEc------CCC--cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEE-------EEE
Q 016257          155 KSVLDMDFSLDSEFLATTS------TDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC-------TVQ  219 (392)
Q Consensus       155 ~~i~~i~~~~~~~~l~~~~------~d~--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~  219 (392)
                      ..+.+.+++|+|+.++...      .|.  .+.+++.. +.. ..+....  ......|+|+|..+....       +..
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence            3678899999999887655      243  45555542 222 3333222  378889999987532210       111


Q ss_pred             eCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEE---EecCCceeee----eeeccccCcceE
Q 016257          220 RGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV---VDVKKMEINH----WSKRLHLGTSIA  292 (392)
Q Consensus       220 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i---wd~~~~~~~~----~~~~~~~~~~i~  292 (392)
                      ....+.+.+.+++.+....   .....|..+.|||||..++... ++.|++   -....++...    .+...- ...+.
T Consensus       426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l-~~~~~  500 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGL-GDTAV  500 (591)
T ss_pred             cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeeccc-CCccc
Confidence            2233456555666554432   3356799999999999988876 577777   4444554111    111111 34468


Q ss_pred             EEEEeeCCCeEEEEeCCCeEEEEEeecCc
Q 016257          293 LVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (392)
Q Consensus       293 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  321 (392)
                      ++.|..++.++ .+..++...+|.+....
T Consensus       501 ~l~W~~~~~L~-V~~~~~~~~v~~v~vDG  528 (591)
T PRK13616        501 SLDWRTGDSLV-VGRSDPEHPVWYVNLDG  528 (591)
T ss_pred             cceEecCCEEE-EEecCCCCceEEEecCC
Confidence            89999999854 55556666677776543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.03  E-value=0.006  Score=52.07  Aligned_cols=206  Identities=14%  Similarity=0.112  Sum_probs=122.8

Q ss_pred             eeEEEEcCCCCeEEEEe--CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC-
Q 016257           66 PMTIAVNPSGDDFVCST--TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP-  142 (392)
Q Consensus        66 v~~~~~sp~~~~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~-  142 (392)
                      ....+++.|+++++...  -...|.|.|+...+....+...         .+..+--+. .+-+.+-+.||.+.-..+. 
T Consensus        97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P---------GC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~  166 (342)
T PF06433_consen   97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP---------GCWLIYPSG-NRGFSMLCGDGSLLTVTLDA  166 (342)
T ss_dssp             GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT---------SEEEEEEEE-TTEEEEEETTSCEEEEEETS
T ss_pred             ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC---------CEEEEEecC-CCceEEEecCCceEEEEECC
Confidence            44567888998877654  3456888898887765444321         222222222 2457788889999988887 


Q ss_pred             CCceeecc----cCCCCc-EEEEEecCCCCeEEEEcCCCcEEEEECCCCeee--EEEecCC---------CcceEEEEec
Q 016257          143 SLRIILDE----PKAHKS-VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW--TFLTRNS---------DEKIELCRFS  206 (392)
Q Consensus       143 ~~~~~~~~----~~~~~~-i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~---------~~~v~~~~~~  206 (392)
                      .|+...+.    ....++ +..-++...+..++..+.+|.|+-.|+......  ..+....         .+.-..++++
T Consensus       167 ~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~  246 (342)
T PF06433_consen  167 DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYH  246 (342)
T ss_dssp             TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEE
T ss_pred             CCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeec
Confidence            45443221    111122 223345555556666788899999888765432  2222110         0123457888


Q ss_pred             CCCCcceEEEEEEeCCc-------cEEEEEeCCCceeeeeecccCCCcEEEEECCCCC-EEEEE-eCCCcEEEEecCCce
Q 016257          207 KDGTKPFLFCTVQRGDK-------ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK-YLAMG-SKDGDICVVDVKKME  277 (392)
Q Consensus       207 ~~~~~~~~~~~~~~~~d-------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~-~~dg~i~iwd~~~~~  277 (392)
                      +...++|+  +.-.+.+       ..|-++|+.+++.+..+.. ..++.+++.+.+.+ +|++. ..++.+.+||..+++
T Consensus       247 ~~~~rlyv--LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  247 AASGRLYV--LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             TTTTEEEE--EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred             cccCeEEE--EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence            87776554  3333333       3588889999998877765 34577899998775 55544 457899999999999


Q ss_pred             eeeeeec
Q 016257          278 INHWSKR  284 (392)
Q Consensus       278 ~~~~~~~  284 (392)
                      .+..+..
T Consensus       324 ~~~~~~~  330 (342)
T PF06433_consen  324 LVRSIEQ  330 (342)
T ss_dssp             EEEEE--
T ss_pred             EEeehhc
Confidence            9887754

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.01  E-value=0.0023  Score=56.94  Aligned_cols=202  Identities=15%  Similarity=0.166  Sum_probs=105.1

Q ss_pred             eeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeecccc-CCCCCCCCCeEEEEecC-----CC---CEEEE
Q 016257           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKK-MPPLQDAGPQKCLSFSV-----DG---SRFAA  129 (392)
Q Consensus        59 ~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~-----~~---~~l~~  129 (392)
                      ++...++|++++.|.-| ++|.|..+|.+.|.|++....+....... .........++++.|+-     |+   -.+++
T Consensus        82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            44557899999998554 99999999999999997776555432222 11222456788888863     33   36889


Q ss_pred             EeCCCcEEEEeCC--C-Ccee----ecccCCCCcEEEEE-ecCC---------------------CCeEEEEcCCCcEEE
Q 016257          130 GGVDGHLRIMHWP--S-LRII----LDEPKAHKSVLDMD-FSLD---------------------SEFLATTSTDGSARI  180 (392)
Q Consensus       130 ~~~dg~i~i~d~~--~-~~~~----~~~~~~~~~i~~i~-~~~~---------------------~~~l~~~~~d~~i~v  180 (392)
                      |...|.+.+|.+.  . +...    .....+.++|..+. ++.+                     ..++++++ +..+++
T Consensus       161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~irv  239 (395)
T PF08596_consen  161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ESDIRV  239 (395)
T ss_dssp             EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEE
T ss_pred             EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccceEE
Confidence            9999999999874  1 1111    11113334444444 3221                     11344444 578999


Q ss_pred             EECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC----CCcEEEEECCCC
Q 016257          181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR----KPASVLSISLDG  256 (392)
Q Consensus       181 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~----~~v~~~~~s~~~  256 (392)
                      +...+.+..++... .......+.+-+-.......+++.-..+|.+++|.+...+.+.......    ..+....++++|
T Consensus       240 ~~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~G  318 (395)
T PF08596_consen  240 FKPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNG  318 (395)
T ss_dssp             E-TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS
T ss_pred             EeCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCC
Confidence            99988877666552 2223444555321111112235666689999999999888876665432    123345667788


Q ss_pred             CEEEEEe
Q 016257          257 KYLAMGS  263 (392)
Q Consensus       257 ~~l~~~~  263 (392)
                      ..++..+
T Consensus       319 di~~~~g  325 (395)
T PF08596_consen  319 DIFYWTG  325 (395)
T ss_dssp             -EEEE-S
T ss_pred             CEEEEeC
Confidence            7666554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=98.01  E-value=0.0097  Score=52.99  Aligned_cols=96  Identities=17%  Similarity=0.176  Sum_probs=60.2

Q ss_pred             EEEEcCCCCeEEEEeCCCeEEE---EEEeCCc-cceeeccccCCCCCCC--CCeEEEEec-----------CCCCEEEEE
Q 016257           68 TIAVNPSGDDFVCSTTNGGCKL---FEVYGGA-TDINLLAKKMPPLQDA--GPQKCLSFS-----------VDGSRFAAG  130 (392)
Q Consensus        68 ~~~~sp~~~~l~~~~~d~~i~i---w~~~~~~-~~~~~~~~~~~~~~~~--~~v~~~~~s-----------~~~~~l~~~  130 (392)
                      .++.+|+++.|+.+..+..+.+   |+..... ....+.......+.+.  ..|+++.+-           +|...+++|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            4678899999999877775544   5332211 1111111111122222  466666553           345689999


Q ss_pred             eCCCcEEEEeCCCCceeecccCCCCcEEEEEecC
Q 016257          131 GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL  164 (392)
Q Consensus       131 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~  164 (392)
                      ..+|.|++|.- +|..+....-|..+|..+.+..
T Consensus        86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence            99999999984 7777777777888888888743

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.00  E-value=0.0011  Score=62.32  Aligned_cols=187  Identities=13%  Similarity=0.084  Sum_probs=104.0

Q ss_pred             CCeeEEEEcCCCCeEEEEe------CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC----
Q 016257           64 GDPMTIAVNPSGDDFVCST------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----  133 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----  133 (392)
                      ..+...+++|+|+.++...      .|..-.+|-...+.....+..        ......-.|+|||+.|++....    
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~--------g~~~t~PsWspDG~~lw~v~dg~~~~  421 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE--------GHSLTRPSWSLDADAVWVVVDGNTVV  421 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec--------CCCCCCceECCCCCceEEEecCcceE
Confidence            4678999999999888765      244445554433322222211        1236788999998877776432    


Q ss_pred             --------CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEE---EECCCCee-e---EEEecCCCc
Q 016257          134 --------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI---WKTEDGVA-W---TFLTRNSDE  198 (392)
Q Consensus       134 --------g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~v---wd~~~~~~-~---~~~~~~~~~  198 (392)
                              +.+.+.+++.++...   ...+.|..+.|||||..++... +++|++   -....+.. +   ..+......
T Consensus       422 ~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~  497 (591)
T PRK13616        422 RVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGD  497 (591)
T ss_pred             EEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCC
Confidence                    233333444333221   2345799999999999888766 477776   44344431 1   112222333


Q ss_pred             ceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc--cCCCcEEEEECCCCCEEEEEeCCCcEE
Q 016257          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDIC  269 (392)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~  269 (392)
                      .+..+.|..++.. +   +.+.+.+..+...++...... .+..  ...++..++-+++  .++....++.+.
T Consensus       498 ~~~~l~W~~~~~L-~---V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        498 TAVSLDWRTGDSL-V---VGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             ccccceEecCCEE-E---EEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            4678999999883 1   233334444555555532221 1111  2456667776653  455556666333

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=5.3e-05  Score=68.08  Aligned_cols=93  Identities=23%  Similarity=0.200  Sum_probs=77.7

Q ss_pred             ceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcE-EEEECCCCCEEEEEeCCCcEEEEecCCce
Q 016257          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPAS-VLSISLDGKYLAMGSKDGDICVVDVKKME  277 (392)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  277 (392)
                      .+..+.|+|.-..     ++.+..+|.+.++.++ .+.+-.+..++..++ +++|.|||+.||+|-.||+|++.|+.++.
T Consensus        22 ~i~~~ewnP~~dL-----iA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   22 NIKRIEWNPKMDL-----IATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             ceEEEEEcCccch-----hheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            5788999999886     7888999999999998 666667776777777 99999999999999999999999999988


Q ss_pred             eeeeeeccccCcceEEEEEee
Q 016257          278 INHWSKRLHLGTSIALVEFCP  298 (392)
Q Consensus       278 ~~~~~~~~~~~~~i~~~~~s~  298 (392)
                      .+....... ...|.++-|++
T Consensus        96 ~l~~~~~s~-e~~is~~~w~~  115 (665)
T KOG4640|consen   96 RLVSFLFSV-ETDISKGIWDR  115 (665)
T ss_pred             ceecccccc-ccchheeeccc
Confidence            776643333 67888888864

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.95  E-value=0.0097  Score=51.05  Aligned_cols=189  Identities=14%  Similarity=0.027  Sum_probs=105.7

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC-----------
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----------  132 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------  132 (392)
                      +.+.++..-..+..|++ +..| +.+++.+.+.....+.. ... -......+.+...|+|.+-++...           
T Consensus        66 ~~~~~~~~~d~~g~Lv~-~~~g-~~~~~~~~~~~~t~~~~-~~~-~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~  141 (307)
T COG3386          66 GGFSSGALIDAGGRLIA-CEHG-VRLLDPDTGGKITLLAE-PED-GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERP  141 (307)
T ss_pred             CCcccceeecCCCeEEE-Eccc-cEEEeccCCceeEEecc-ccC-CCCcCCCCceeEcCCCCEEEeCCCccccCccccCC
Confidence            33444444334444544 3555 77777755543222111 111 112245678888899876554322           


Q ss_pred             CCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcC-CCcEEEEECCC--C----eeeEEEecCCCcceEEEEe
Q 016257          133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTED--G----VAWTFLTRNSDEKIELCRF  205 (392)
Q Consensus       133 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~vwd~~~--~----~~~~~~~~~~~~~v~~~~~  205 (392)
                      -|.++.++. .+........+-..-+.|+||||++.|+.+.. .+.|.-|++..  +    +..........+..-.++.
T Consensus       142 ~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~v  220 (307)
T COG3386         142 TGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAV  220 (307)
T ss_pred             cceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEE
Confidence            133444443 34444433333445678999999988777754 36788787652  1    1111122122345667778


Q ss_pred             cCCCCcceEEEEEEeCCc-cEEEEEeCCCceeeeeecccCCCcEEEEEC-CCCCEEEEEe
Q 016257          206 SKDGTKPFLFCTVQRGDK-ALLAVYDISTWNKIGHKRLLRKPASVLSIS-LDGKYLAMGS  263 (392)
Q Consensus       206 ~~~~~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~  263 (392)
                      ..+|..     -..+..+ +.|..|+.. ++.+.........+++++|- |+.+.|++.+
T Consensus       221 DadG~l-----w~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         221 DADGNL-----WVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             eCCCCE-----EEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence            888873     1133333 389999998 88888887766777888884 4555555544

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.94  E-value=0.0087  Score=54.02  Aligned_cols=167  Identities=14%  Similarity=0.155  Sum_probs=85.0

Q ss_pred             cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCC---CcceEE-----EEec
Q 016257          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---DEKIEL-----CRFS  206 (392)
Q Consensus       135 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~---~~~v~~-----~~~~  206 (392)
                      .|++|+.. |+.+..+.-..+.|.++.|+.+. .|++...||.+++||+....   .+....   ...|..     ..+.
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~  136 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFY  136 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccccC
Confidence            47777753 44444433333789999999865 45566689999999986333   221111   111211     1222


Q ss_pred             CCCCcceEEEEEEeCCccEEEEE-eCCCceeeeeecccCCCcE----------EEEECCCCCEEEEEeCCCcEEEEecCC
Q 016257          207 KDGTKPFLFCTVQRGDKALLAVY-DISTWNKIGHKRLLRKPAS----------VLSISLDGKYLAMGSKDGDICVVDVKK  275 (392)
Q Consensus       207 ~~~~~~~~~~~~~~~~d~~i~v~-d~~~~~~~~~~~~~~~~v~----------~~~~s~~~~~l~~~~~dg~i~iwd~~~  275 (392)
                      .+|-      ++. ..++.+.+. +.........+........          ...++.+....+....++.+.+.+-..
T Consensus       137 ~~Gi------vvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~  209 (410)
T PF04841_consen  137 KNGI------VVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS  209 (410)
T ss_pred             CCCE------EEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc
Confidence            2332      122 233334333 2221111111110000000          022334444444444445555444322


Q ss_pred             ceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          276 MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       276 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      .+.   +  .. .+++..++.||+|++||.-..+|.+.+...+.
T Consensus       210 ~~~---i--~~-~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf  247 (410)
T PF04841_consen  210 FKQ---I--DS-DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF  247 (410)
T ss_pred             ccc---c--cC-CCCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence            211   1  11 46899999999999999999999988876543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.91  E-value=0.0034  Score=54.96  Aligned_cols=182  Identities=11%  Similarity=0.093  Sum_probs=103.6

Q ss_pred             CCEEEEEeC---------C-CcEEEEeCCCC----ceeec--ccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 016257          124 GSRFAAGGV---------D-GHLRIMHWPSL----RIILD--EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV  187 (392)
Q Consensus       124 ~~~l~~~~~---------d-g~i~i~d~~~~----~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~  187 (392)
                      ..+|++|+.         . |.|.++++...    ..+..  .....++|++++-- .+. |+++. ++.|.+|++...+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence            457777652         2 88999999874    12211  12334678888766 344 44443 4789999998877


Q ss_pred             -eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC-ceeeeee--cccCCCcEEEEECCCCCEEEEEe
Q 016257          188 -AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHK--RLLRKPASVLSISLDGKYLAMGS  263 (392)
Q Consensus       188 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~-~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~  263 (392)
                       ....-..+....+.++....  ..     ++.+.....+.++..+. ...+..+  ......++++.+-++++.++.+.
T Consensus       119 ~l~~~~~~~~~~~i~sl~~~~--~~-----I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D  191 (321)
T PF03178_consen  119 TLLKKAFYDSPFYITSLSVFK--NY-----ILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD  191 (321)
T ss_dssp             SEEEEEEE-BSSSEEEEEEET--TE-----EEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE
T ss_pred             cchhhheecceEEEEEEeccc--cE-----EEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc
Confidence             44433333333566665553  34     56666666666664332 2212222  22245678888886667999999


Q ss_pred             CCCcEEEEecCC-------ce-eeeeeeccccCcceEEE---EEeeC--C------CeEEEEeCCCeEEEE
Q 016257          264 KDGDICVVDVKK-------ME-INHWSKRLHLGTSIALV---EFCPT--Q------RVVLTASKEWGAMIT  315 (392)
Q Consensus       264 ~dg~i~iwd~~~-------~~-~~~~~~~~~~~~~i~~~---~~s~~--~------~~l~~~~~dg~i~iw  315 (392)
                      .+|.+.++....       ++ .+......|.+..|+++   ++.|.  +      ..++.++.+|.|...
T Consensus       192 ~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  192 KDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             TTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             CCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            999999998763       22 22222234446778888   55552  2      248888899999844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.85  E-value=0.014  Score=50.02  Aligned_cols=220  Identities=13%  Similarity=0.040  Sum_probs=124.7

Q ss_pred             EEEEcCCCCeEE-EEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCce
Q 016257           68 TIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI  146 (392)
Q Consensus        68 ~~~~sp~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~  146 (392)
                      ...|.++...|+ +--..+.|.-|+..+++... +.        ..+.+.++..-..+..|+++.  .-+.+++.+++..
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~--------~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~   97 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP--------SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGK   97 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE--------CCCCcccceeecCCCeEEEEc--cccEEEeccCCce
Confidence            345777776444 44567788888887554211 11        123334444434444555543  3366777665554


Q ss_pred             eecccC---C--CCcEEEEEecCCCCeEEEEcC-----------CCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCC
Q 016257          147 ILDEPK---A--HKSVLDMDFSLDSEFLATTST-----------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (392)
Q Consensus       147 ~~~~~~---~--~~~i~~i~~~~~~~~l~~~~~-----------d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (392)
                      ...+..   .  ....+.+...|+|.+.++...           -|.++.+|. .+...+.+..+ -..-+.++||||++
T Consensus        98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~-~~~~NGla~SpDg~  175 (307)
T COG3386          98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDD-LTIPNGLAFSPDGK  175 (307)
T ss_pred             eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCc-EEecCceEECCCCC
Confidence            222111   1  125678889999987665433           133444443 44444444332 22467899999998


Q ss_pred             cceEEEEEEeCCccEEEEEeCCC--cee-----eeeecccCCCcEEEEECCCCCEEEEEeCCC-cEEEEecCCceeeeee
Q 016257          211 KPFLFCTVQRGDKALLAVYDIST--WNK-----IGHKRLLRKPASVLSISLDGKYLAMGSKDG-DICVVDVKKMEINHWS  282 (392)
Q Consensus       211 ~~~~~~~~~~~~d~~i~v~d~~~--~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~  282 (392)
                      .+    .++-+..+.|.-|++..  +..     ........+..-.++...+|.+.+++..+| .|.+|+.+ ++++..+
T Consensus       176 tl----y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i  250 (307)
T COG3386         176 TL----YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEI  250 (307)
T ss_pred             EE----EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEE
Confidence            63    35556668888887762  111     111222334455677777888876554444 89999988 7777766


Q ss_pred             eccccCcceEEEEEee-CCCeEEEEe
Q 016257          283 KRLHLGTSIALVEFCP-TQRVVLTAS  307 (392)
Q Consensus       283 ~~~~~~~~i~~~~~s~-~~~~l~~~~  307 (392)
                      .. + ...+++++|-- +.+.|+..+
T Consensus       251 ~l-P-~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         251 KL-P-VKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             EC-C-CCCCccceEeCCCcCEEEEEe
Confidence            43 3 36788888854 445444433

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.73  E-value=0.0028  Score=60.70  Aligned_cols=144  Identities=15%  Similarity=0.084  Sum_probs=99.1

Q ss_pred             CCCEEEEE-eCCCcEEEEeCCCCceeecccCCCC-cEEEEEecC-----CCCeEEEEcCCCcEEEEECCCCe--eeEE-E
Q 016257          123 DGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSL-----DSEFLATTSTDGSARIWKTEDGV--AWTF-L  192 (392)
Q Consensus       123 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~i~~~~-----~~~~l~~~~~d~~i~vwd~~~~~--~~~~-~  192 (392)
                      +.++|+.- .....|+-.|++.|+.+.....+.. +|..++-..     +....+.|-.+..+..||.|-..  .+.. .
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            33444432 3457899999999999887776654 355543321     12345566677889999998643  2211 1


Q ss_pred             -ecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 016257          193 -TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVV  271 (392)
Q Consensus       193 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  271 (392)
                       .-.......|++-+.+|.      ++.|+.+|.|++||--..+....+.+.+.+|..+..+.||++|++.+. ..|.++
T Consensus       572 k~Y~~~~~Fs~~aTt~~G~------iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi  644 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDGY------IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLI  644 (794)
T ss_pred             cccccCCCceEEEecCCce------EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEE
Confidence             112334578888888888      799999999999995443444455667889999999999999887764 567777


Q ss_pred             ec
Q 016257          272 DV  273 (392)
Q Consensus       272 d~  273 (392)
                      +.
T Consensus       645 ~t  646 (794)
T PF08553_consen  645 DT  646 (794)
T ss_pred             EE
Confidence            75

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.71  E-value=0.0059  Score=50.07  Aligned_cols=153  Identities=14%  Similarity=0.152  Sum_probs=95.5

Q ss_pred             cEEEEEecCCC-CeEEEEcCCCc-EEEEECCCCeeeEEEecCCCcc-eEEEEecCCCCcceEEEEEEeCCccEEEEEeCC
Q 016257          156 SVLDMDFSLDS-EFLATTSTDGS-ARIWKTEDGVAWTFLTRNSDEK-IELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (392)
Q Consensus       156 ~i~~i~~~~~~-~~l~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~  232 (392)
                      ....|+++|.. .-++.+-.-|+ ..++|....+...++....+.. .-.=.|||||.++|..---.....|.|-|||.+
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence            34567888854 44666666665 6789998877766665432211 223469999997321000011234789999998


Q ss_pred             Cc-eeeeeecccCCCcEEEEECCCCCEEEEEeC------------------CCcEEEEecCCceeeeeeec---cccCcc
Q 016257          233 TW-NKIGHKRLLRKPASVLSISLDGKYLAMGSK------------------DGDICVVDVKKMEINHWSKR---LHLGTS  290 (392)
Q Consensus       233 ~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~~~~---~~~~~~  290 (392)
                      .+ +.+.++..|.-....+.+.+||+.++.+..                  .-++.+.|..+++++.....   .+ .-.
T Consensus       149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~-~lS  227 (366)
T COG3490         149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLR-QLS  227 (366)
T ss_pred             cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhh-hcc
Confidence            53 345667777777788999999999987643                  11344555555555443221   22 457


Q ss_pred             eEEEEEeeCCCeEEEEeCC
Q 016257          291 IALVEFCPTQRVVLTASKE  309 (392)
Q Consensus       291 i~~~~~s~~~~~l~~~~~d  309 (392)
                      |..++..+||+.++.+-..
T Consensus       228 iRHld~g~dgtvwfgcQy~  246 (366)
T COG3490         228 IRHLDIGRDGTVWFGCQYR  246 (366)
T ss_pred             eeeeeeCCCCcEEEEEEee
Confidence            8888888888876665443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.71  E-value=0.0031  Score=44.15  Aligned_cols=101  Identities=20%  Similarity=0.201  Sum_probs=67.0

Q ss_pred             EEEEEecC---CC-CeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC
Q 016257          157 VLDMDFSL---DS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (392)
Q Consensus       157 i~~i~~~~---~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~  232 (392)
                      |+++++..   || +.|++|+.|..|++|+-.  ..+..+...  +.+.+++-...+.      ++.+-.+|+|-+|+..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~--~~v~~L~~~~~~~------F~Y~l~NGTVGvY~~~   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET--DKVTSLCSLGGGR------FAYALANGTVGVYDRS   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc--cceEEEEEcCCCE------EEEEecCCEEEEEeCc
Confidence            55666544   33 579999999999999853  566666543  3688888777765      5777889999999864


Q ss_pred             CceeeeeecccCCCcEEEEECC---CC-CEEEEEeCCCcEEE
Q 016257          233 TWNKIGHKRLLRKPASVLSISL---DG-KYLAMGSKDGDICV  270 (392)
Q Consensus       233 ~~~~~~~~~~~~~~v~~~~~s~---~~-~~l~~~~~dg~i~i  270 (392)
                      .  .+-..+. +..+.++++..   || .-|++|-.+|.|-+
T Consensus        72 ~--RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   72 Q--RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             c--eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            3  2222222 33455665543   33 46889988998753

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.70  E-value=0.045  Score=51.23  Aligned_cols=153  Identities=9%  Similarity=0.085  Sum_probs=91.5

Q ss_pred             CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC---CCCEEEEEe------CCCcEEEEeCCCCce
Q 016257           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV---DGSRFAAGG------VDGHLRIMHWPSLRI  146 (392)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~------~dg~i~i~d~~~~~~  146 (392)
                      ..++.++.++.+.-.|.++++...+.......   ..   ..+.-+|   ++ .++++.      .+|.|..+|.++|+.
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~---~~---~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~  193 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYK---AG---YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKL  193 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeeccccccc---cc---ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCce
Confidence            46777788999999999998876554321110   00   0111112   34 455543      268899999999887


Q ss_pred             eecccCCCC-------------------------------cE-EEEEecCCCCeEEEEcCC-----C-----------cE
Q 016257          147 ILDEPKAHK-------------------------------SV-LDMDFSLDSEFLATTSTD-----G-----------SA  178 (392)
Q Consensus       147 ~~~~~~~~~-------------------------------~i-~~i~~~~~~~~l~~~~~d-----~-----------~i  178 (392)
                      +-+......                               .+ ..+++.|...+++.+..+     +           +|
T Consensus       194 lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~  273 (527)
T TIGR03075       194 VWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSI  273 (527)
T ss_pred             eEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeE
Confidence            654322110                               11 134667766666665522     2           57


Q ss_pred             EEEECCCCeeeEEEecCCCc--------ceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceee
Q 016257          179 RIWKTEDGVAWTFLTRNSDE--------KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI  237 (392)
Q Consensus       179 ~vwd~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~  237 (392)
                      .-.|+++++..-.++..+..        ...-+....+|+.  .-.++.+..+|.+++.|.++++.+
T Consensus       274 vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~--~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       274 VARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKP--RKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcE--EEEEEEeCCCceEEEEECCCCcee
Confidence            77888999888777643221        1112223345552  112688999999999999999875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>smart00320 WD40 WD40 repeats

Probab=97.67  E-value=0.00017  Score=40.01  Aligned_cols=36  Identities=19%  Similarity=0.434  Sum_probs=31.9

Q ss_pred             EEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEE
Q 016257           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFE   91 (392)
Q Consensus        56 ~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~   91 (392)
                      ...+..|...|.++.|++++..+++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667889999999999999999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.67  E-value=0.032  Score=48.72  Aligned_cols=183  Identities=14%  Similarity=0.089  Sum_probs=89.8

Q ss_pred             EEecCCCCEEEEEeC-C--CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec
Q 016257          118 LSFSVDGSRFAAGGV-D--GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR  194 (392)
Q Consensus       118 ~~~s~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  194 (392)
                      =+|.+||++|+.++. |  ..+.+.|+++++..+-............++|+.+.++....+..++-.|+++.+....+..
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence            467889987766654 4  4577778888877654333323333566788888877665567899999998876555444


Q ss_pred             CCCcceEEEEec--CCCCcceEEEEEEeCCc-------------------cEEEEEeCCCceeeeeecccCCCcEEEEEC
Q 016257          195 NSDEKIELCRFS--KDGTKPFLFCTVQRGDK-------------------ALLAVYDISTWNKIGHKRLLRKPASVLSIS  253 (392)
Q Consensus       195 ~~~~~v~~~~~~--~~~~~~~~~~~~~~~~d-------------------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s  253 (392)
                      + ...+....|.  .++.. +. .+.....+                   ..|.-.|+.+++....+. ....+.-+.||
T Consensus       121 p-~~~~g~gt~v~n~d~t~-~~-g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fs  196 (386)
T PF14583_consen  121 P-DDWKGYGTWVANSDCTK-LV-GIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFS  196 (386)
T ss_dssp             --TTEEEEEEEEE-TTSSE-EE-EEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEE
T ss_pred             C-cccccccceeeCCCccE-EE-EEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccC
Confidence            4 3345445554  33443 11 12222222                   346666777776543333 45677889999


Q ss_pred             CCCCEEEEEeCCC-----cEEEE--ecCCceeeeeeeccccCcceEEEEEeeCCCeEEE
Q 016257          254 LDGKYLAMGSKDG-----DICVV--DVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLT  305 (392)
Q Consensus       254 ~~~~~l~~~~~dg-----~i~iw--d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  305 (392)
                      |....+++=+..|     .-+||  +.............. ...+..=-|.|||..|.-
T Consensus       197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-~e~~gHEfw~~DG~~i~y  254 (386)
T PF14583_consen  197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-GESVGHEFWVPDGSTIWY  254 (386)
T ss_dssp             TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-TEEEEEEEE-TTSS-EEE
T ss_pred             CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-CcccccccccCCCCEEEE
Confidence            9655444433322     12555  444333322222222 445666678999986654

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.67  E-value=0.0045  Score=43.38  Aligned_cols=103  Identities=12%  Similarity=0.128  Sum_probs=62.9

Q ss_pred             eEEEEecC---CC-CEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeE
Q 016257          115 QKCLSFSV---DG-SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT  190 (392)
Q Consensus       115 v~~~~~s~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~  190 (392)
                      |+++++..   || +.|++|+.|..|++|+-+  +.+.++ .....|.++.-... ..++.+..+|+|-+|+-..  .+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei-~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI-TETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE-ecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eee
Confidence            45666554   33 579999999999999743  344333 34456777776665 5688899999999998532  222


Q ss_pred             EEecCCCcceEEEEecC-CCCcceEEEEEEeCCccEEE
Q 016257          191 FLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALLA  227 (392)
Q Consensus       191 ~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~d~~i~  227 (392)
                      ..+.  ...+.++++.. ++...  .-++++-.+|.|-
T Consensus        76 RiKS--K~~~~~~~~~D~~gdG~--~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKS--KNQVTSMAFYDINGDGV--PELIVGWSNGKVE  109 (111)
T ss_pred             eecc--CCCeEEEEEEcCCCCCc--eEEEEEecCCeEE
Confidence            3332  22355554433 33110  0157777777664

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.64  E-value=0.0016  Score=57.77  Aligned_cols=148  Identities=17%  Similarity=0.124  Sum_probs=100.9

Q ss_pred             CCCeEE-EEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE--EEEEEeCCccEEEEEeCCCcee--eee
Q 016257          165 DSEFLA-TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL--FCTVQRGDKALLAVYDISTWNK--IGH  239 (392)
Q Consensus       165 ~~~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~d~~i~v~d~~~~~~--~~~  239 (392)
                      +.++|+ ++.....++-.|++.|+.+..+..+..  |.-+.+.|+.+..-+  -..+.|-.++.|.-||.|-...  +..
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence            444443 455556788999999999999986654  777888887653111  1135566788899999984332  212


Q ss_pred             eccc----CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEE
Q 016257          240 KRLL----RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMIT  315 (392)
Q Consensus       240 ~~~~----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  315 (392)
                      ...+    ...-.|.+-..+| ++++|+.+|.|++||- .+........+- +.+|..+..+.+|++|++.+.. .+.+-
T Consensus       422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgL-G~~I~hVdvtadGKwil~Tc~t-yLlLi  497 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGL-GDAIKHVDVTADGKWILATCKT-YLLLI  497 (644)
T ss_pred             eeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhccccc-CCceeeEEeeccCcEEEEeccc-EEEEE
Confidence            2222    2345566655555 8899999999999997 555444444555 8899999999999998877654 66666


Q ss_pred             Eee
Q 016257          316 KLT  318 (392)
Q Consensus       316 ~~~  318 (392)
                      ++.
T Consensus       498 ~t~  500 (644)
T KOG2395|consen  498 DTL  500 (644)
T ss_pred             EEe
Confidence            654

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.63  E-value=0.032  Score=47.61  Aligned_cols=219  Identities=14%  Similarity=0.109  Sum_probs=124.8

Q ss_pred             CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecc---
Q 016257           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE---  150 (392)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---  150 (392)
                      .++.|+.|+.+| +.+++...........        +...|..+...++-+.|++-+ |+.++++++.........   
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~   75 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPL   75 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe--------ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccc
Confidence            577899999999 9999983332222221        233589999999877777765 699999998754433211   


Q ss_pred             -----------cCCCCcEEEEE--ecCCC-CeEEEEcCCCcEEEEECCCC-----eeeEEEecCCCcceEEEEecCCCCc
Q 016257          151 -----------PKAHKSVLDMD--FSLDS-EFLATTSTDGSARIWKTEDG-----VAWTFLTRNSDEKIELCRFSKDGTK  211 (392)
Q Consensus       151 -----------~~~~~~i~~i~--~~~~~-~~l~~~~~d~~i~vwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~  211 (392)
                                 ......+...+  -...+ ..|+++. ..+|.+|.....     +..+.+...  ..+..++|.++  .
T Consensus        76 ~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~~~--~  150 (275)
T PF00780_consen   76 AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFLGN--K  150 (275)
T ss_pred             cccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEeCC--E
Confidence                       11122344444  11233 3444444 468888887653     344555433  46889999833  2


Q ss_pred             ceEEEEEEeCCccEEEEEeCCCceeeeeeccc------------CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceee
Q 016257          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLL------------RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN  279 (392)
Q Consensus       212 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~------------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  279 (392)
                           ++.+. .....+.|+.++.........            ..++..+.. +++.+|++-  |..-.+.|. .|+..
T Consensus       151 -----i~v~~-~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~  220 (275)
T PF00780_consen  151 -----ICVGT-SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPS  220 (275)
T ss_pred             -----EEEEe-CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcC
Confidence                 33333 445788888866543322111            123334444 345666543  333444454 33333


Q ss_pred             e-eeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257          280 H-WSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       280 ~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                      + ....-  ...+.++++.  ..+|++.+.+ .|.||++..+.-
T Consensus       221 r~~~i~W--~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~l  259 (275)
T PF00780_consen  221 RKSTIQW--SSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGEL  259 (275)
T ss_pred             cccEEEc--CCchhEEEEE--CCEEEEECCC-EEEEEECcCCcE
Confidence            2 11111  4466677773  4578777665 699999987643

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>smart00320 WD40 WD40 repeats

Probab=97.54  E-value=0.00029  Score=38.96  Aligned_cols=37  Identities=35%  Similarity=0.462  Sum_probs=31.8

Q ss_pred             eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEe
Q 016257          236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (392)
Q Consensus       236 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  272 (392)
                      +...+..+...+.++.|++++.++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4445566778899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK10115 protease 2; Provisional

Probab=97.52  E-value=0.072  Score=51.66  Aligned_cols=197  Identities=6%  Similarity=-0.052  Sum_probs=107.0

Q ss_pred             CeEEEEecCCCCEEEEEeC-----CCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCC------CcEEEEE
Q 016257          114 PQKCLSFSVDGSRFAAGGV-----DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD------GSARIWK  182 (392)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------~~i~vwd  182 (392)
                      .+..+.++||+++|+.+..     ...|++.|+.+++.+........  ..++|.+|++.|+....+      ..|+.++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            4677899999998887542     23588999988864332222222  459999999876655432      3577888


Q ss_pred             CCCC--eeeEEEecCCCcceE-EEEecCCCCcceEEEEEEeCCccEEEEEeCC--CceeeeeecccCCCcEEEEECCCCC
Q 016257          183 TEDG--VAWTFLTRNSDEKIE-LCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWNKIGHKRLLRKPASVLSISLDGK  257 (392)
Q Consensus       183 ~~~~--~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~--~~~~~~~~~~~~~~v~~~~~s~~~~  257 (392)
                      +.++  +....+..... ... ....+.++++++  .-.....++.+.+++..  .++....+.........+. +.. .
T Consensus       206 lgt~~~~d~lv~~e~~~-~~~~~~~~s~d~~~l~--i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~  280 (686)
T PRK10115        206 IGTPASQDELVYEEKDD-TFYVSLHKTTSKHYVV--IHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-H  280 (686)
T ss_pred             CCCChhHCeEEEeeCCC-CEEEEEEEcCCCCEEE--EEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-C
Confidence            8877  33333332222 233 333344676533  34555566789999853  3332212222122222222 222 3


Q ss_pred             EEEEEeCC----CcEEEEecCC-ceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          258 YLAMGSKD----GDICVVDVKK-MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       258 ~l~~~~~d----g~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      .++.-+..    ..|...++.. ++....+ .......|..+.+. .+.++++...+|.-+++-+..
T Consensus       281 ~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~-~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~  345 (686)
T PRK10115        281 RFYLRSNRHGKNFGLYRTRVRDEQQWEELI-PPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINR  345 (686)
T ss_pred             EEEEEEcCCCCCceEEEecCCCcccCeEEE-CCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcC
Confidence            33333322    2344445542 2222222 22213478888887 445667777788888877764

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.52  E-value=0.00016  Score=56.97  Aligned_cols=141  Identities=16%  Similarity=0.088  Sum_probs=74.5

Q ss_pred             EEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec-ccCCCc
Q 016257          169 LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPA  247 (392)
Q Consensus       169 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v  247 (392)
                      +..-+.|+.++-++++..+....-.........-+.+   +..     ++.++.+|.|.+|............ .....+
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~---~~~-----~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i  104 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA---SAK-----LMVGTSDGAVYVFNWNLEGAHSDRVCSGEESI  104 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcceeeccc---Cce-----EEeecccceEEEecCCccchHHHhhhcccccc
Confidence            4445567888877776543221111111111111111   222     7889999999999887322211111 111222


Q ss_pred             EE-EEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEE--eCCCeEEEEEee
Q 016257          248 SV-LSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA--SKEWGAMITKLT  318 (392)
Q Consensus       248 ~~-~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~dg~i~iw~~~  318 (392)
                      .+ +.--.++.+..+++.||.|+.|+++-.+.+-.. ..|...++..+..+..++.++.+  |.|..++.|++.
T Consensus       105 ~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~-g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  105 DLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV-GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeccccccccceeEEeccCCceeeeccccCceeeee-ccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            22 233345668899999999999999988877654 34411344444444444444444  445555555544

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.44  E-value=0.051  Score=46.44  Aligned_cols=151  Identities=13%  Similarity=0.121  Sum_probs=75.7

Q ss_pred             CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEEC-CCCeeeE
Q 016257          112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT-EDGVAWT  190 (392)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~-~~~~~~~  190 (392)
                      .+.+..+.-++||++++++..-....-||.-...-..........|.+|.|.|++.+.+.+ ..|.|+.=+. ...+...
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~  222 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS  222 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence            4678899999999988887654445566643222222223344689999999998876655 7788888772 2222211


Q ss_pred             E--Eec-CCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceee---eeecccCCCcEEEEECCCCCEEEEEeC
Q 016257          191 F--LTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI---GHKRLLRKPASVLSISLDGKYLAMGSK  264 (392)
Q Consensus       191 ~--~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~  264 (392)
                      .  ... .....+..++|.+++.      +.+++..+.+. .....++.-   ............+.|.++.+-++.| .
T Consensus       223 ~~~~~~~~~~~~~ld~a~~~~~~------~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~  294 (302)
T PF14870_consen  223 EPIIPIKTNGYGILDLAYRPPNE------IWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-Q  294 (302)
T ss_dssp             --B-TTSS--S-EEEEEESSSS-------EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--S
T ss_pred             cccCCcccCceeeEEEEecCCCC------EEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-C
Confidence            1  111 1122378899999877      34455555443 333334332   2222334567888887665555554 5


Q ss_pred             CCcEEEE
Q 016257          265 DGDICVV  271 (392)
Q Consensus       265 dg~i~iw  271 (392)
                      +|.|.-|
T Consensus       295 ~G~ll~~  301 (302)
T PF14870_consen  295 DGVLLRY  301 (302)
T ss_dssp             TTEEEEE
T ss_pred             CcEEEEe
Confidence            7876554

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.42  E-value=0.14  Score=49.64  Aligned_cols=291  Identities=11%  Similarity=0.055  Sum_probs=151.4

Q ss_pred             CCCeeEEEEcCCC------CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcE
Q 016257           63 EGDPMTIAVNPSG------DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (392)
Q Consensus        63 ~~~v~~~~~sp~~------~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  136 (392)
                      ...|.|+.++|-|      ++++.|..+..+.+.-................  .-...|.-..+--|..+|.++..||.+
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~--~iPRSIl~~~~e~d~~yLlvalgdG~l  607 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGE--IIPRSILLTTFEGDIHYLLVALGDGAL  607 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCC--ccchheeeEEeeccceEEEEEcCCceE
Confidence            5689999999842      27888888776655544332211111111111  112455566666678899999999998


Q ss_pred             EEEeCC--CCceeecc--cCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcc
Q 016257          137 RIMHWP--SLRIILDE--PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (392)
Q Consensus       137 ~i~d~~--~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (392)
                      .-|.+.  +++..-..  .-...++.--.|+..++.-+.+..|+-..+|.-+..-....+....  .-..+.|+.+.-..
T Consensus       608 ~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~ke--v~~~c~f~s~a~~d  685 (1096)
T KOG1897|consen  608 LYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKE--VNHMCPFNSDAYPD  685 (1096)
T ss_pred             EEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHH--hhhhcccccccCCc
Confidence            776554  44332111  2233466666677666555555556767777654332222222111  11222333332211


Q ss_pred             eEEEEEEeCCccEEEEEeCCCceee--eeecccCCCcEEEEECCCCCEEEEEeCC--------------CcEEEEecCCc
Q 016257          213 FLFCTVQRGDKALLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAMGSKD--------------GDICVVDVKKM  276 (392)
Q Consensus       213 ~~~~~~~~~~d~~i~v~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------g~i~iwd~~~~  276 (392)
                      .   ++. ...+.+.+.-+..-+.+  ++ -......+.+++.+....+++.+..              ..++++|-.+.
T Consensus       686 ~---l~~-~~~~~l~i~tid~iqkl~irt-vpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf  760 (1096)
T KOG1897|consen  686 S---LAS-ANGGALTIGTIDEIQKLHIRT-VPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTF  760 (1096)
T ss_pred             e---EEE-ecCCceEEEEecchhhcceee-ecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCce
Confidence            1   222 23344555544432221  22 1223455667777644444443321              24778888887


Q ss_pred             eeeeeeeccc--cCcceEEEEEeeC-CCeEEEEeC----------CCeEEEEEeecCccccceee---eeeeeeeeeece
Q 016257          277 EINHWSKRLH--LGTSIALVEFCPT-QRVVLTASK----------EWGAMITKLTVPADWKEWQI---YSLLLALFLASA  340 (392)
Q Consensus       277 ~~~~~~~~~~--~~~~i~~~~~s~~-~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~  340 (392)
                      +.........  ....|.++.|..| +.+++.|..          .|.|.++.+.....+...+.   .-.+..+..-. 
T Consensus       761 ~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fn-  839 (1096)
T KOG1897|consen  761 EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFN-  839 (1096)
T ss_pred             eEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhC-
Confidence            7665443222  0234555668887 667777753          38888888887444332211   11112221112 


Q ss_pred             EEEEeeecceeeeeccccccccc
Q 016257          341 VVFYIFFENSDSFWNFPVARNQH  363 (392)
Q Consensus       341 ~~~~~~~d~~i~~W~~~~~~~~~  363 (392)
                      -.+.++....|++++..+++.+.
T Consensus       840 gkllA~In~~vrLye~t~~~eLr  862 (1096)
T KOG1897|consen  840 GKLLAGINQSVRLYEWTTERELR  862 (1096)
T ss_pred             CeEEEecCcEEEEEEccccceeh
Confidence            23445567889999998886553

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.41  E-value=0.054  Score=44.80  Aligned_cols=185  Identities=14%  Similarity=0.164  Sum_probs=115.7

Q ss_pred             CCeEEEEecCCCCEEEEEeCCC--cEEEEeCCCCceeecccCCCC-cEEEEEecCCCCeEEEEcCCCcEEEEECCCCeee
Q 016257          113 GPQKCLSFSVDGSRFAAGGVDG--HLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW  189 (392)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~  189 (392)
                      .....+.|..+|.++-+.+.-|  .|+.+|+++++......-... --..++... ++.....-.++...+||..+.+.+
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEE
Confidence            3456788877887777777655  699999999987654433222 223344442 344445567899999999999998


Q ss_pred             EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC-----CCcEEEEECCCCCEEEEEeC
Q 016257          190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSK  264 (392)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~  264 (392)
                      .++.-..+  =..++  .++..     ++.+.....|..+|.++.+....+....     ..++.+.+- +|...|=.-.
T Consensus       124 ~~~~y~~E--GWGLt--~dg~~-----Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~  193 (264)
T PF05096_consen  124 GTFPYPGE--GWGLT--SDGKR-----LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQ  193 (264)
T ss_dssp             EEEE-SSS----EEE--ECSSC-----EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETT
T ss_pred             EEEecCCc--ceEEE--cCCCE-----EEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCC
Confidence            88876543  35565  55665     6677778899999998877665544321     245556664 5666555556


Q ss_pred             CCcEEEEecCCceeeeeeecc---------c----cCcceEEEEEeeCCCeEEEEeC
Q 016257          265 DGDICVVDVKKMEINHWSKRL---------H----LGTSIALVEFCPTQRVVLTASK  308 (392)
Q Consensus       265 dg~i~iwd~~~~~~~~~~~~~---------~----~~~~i~~~~~s~~~~~l~~~~~  308 (392)
                      ...|...|..+|++...+...         .    ...-.+.+++.|....|...+.
T Consensus       194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            677888899999887655210         0    0245889999998776555553

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.41  E-value=0.0034  Score=55.81  Aligned_cols=147  Identities=14%  Similarity=0.122  Sum_probs=99.6

Q ss_pred             ecCCCCEEE-EEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCe-------EEEEcCCCcEEEEECCCCee--e
Q 016257          120 FSVDGSRFA-AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEF-------LATTSTDGSARIWKTEDGVA--W  189 (392)
Q Consensus       120 ~s~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~-------l~~~~~d~~i~vwd~~~~~~--~  189 (392)
                      ...+.++|+ ++.....++-.|++.|+.+.....+.. |.-+.+.|+.+.       -+.|-.|..|.-||.+-...  +
T Consensus       341 ~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl  419 (644)
T KOG2395|consen  341 HRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL  419 (644)
T ss_pred             hccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence            334444443 455556788899999998876665554 777778776532       23455678899999874322  1


Q ss_pred             EEEecC---CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCC
Q 016257          190 TFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG  266 (392)
Q Consensus       190 ~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  266 (392)
                      ...+.+   ......|.+-..+|.      ++.++.+|.|++||.-.......+.+...+|..+..+.+|++|+..+ +.
T Consensus       420 ~~~q~kqy~~k~nFsc~aTT~sG~------IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~t  492 (644)
T KOG2395|consen  420 AVVQSKQYSTKNNFSCFATTESGY------IVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KT  492 (644)
T ss_pred             eeeeccccccccccceeeecCCce------EEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-cc
Confidence            111111   223456677677776      79999999999999844444456677889999999999999988766 45


Q ss_pred             cEEEEecC
Q 016257          267 DICVVDVK  274 (392)
Q Consensus       267 ~i~iwd~~  274 (392)
                      .+.+.++.
T Consensus       493 yLlLi~t~  500 (644)
T KOG2395|consen  493 YLLLIDTL  500 (644)
T ss_pred             EEEEEEEe
Confidence            67776653

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.31  E-value=0.13  Score=47.06  Aligned_cols=123  Identities=8%  Similarity=0.067  Sum_probs=72.2

Q ss_pred             CCCCCeeEEEEcCC----CCeEEEEeCCCeEEEEEEeCCccc-eeeccccCCCCCCCCC--eEEEEecCCCCEEEEEeCC
Q 016257           61 ESEGDPMTIAVNPS----GDDFVCSTTNGGCKLFEVYGGATD-INLLAKKMPPLQDAGP--QKCLSFSVDGSRFAAGGVD  133 (392)
Q Consensus        61 ~h~~~v~~~~~sp~----~~~l~~~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~d  133 (392)
                      |.-+.|..+.|.|-    ...|++......|.||.+...... .+........+...-+  -..+.|+|....|++-...
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~  133 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR  133 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence            44567999999984    334555566777999998632211 1111111111111111  2467899988888776655


Q ss_pred             CcEEEEeCCC-CceeecccCCCCcEEEEEecCCCCeEEEEcC-CCcEEEEEC
Q 016257          134 GHLRIMHWPS-LRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKT  183 (392)
Q Consensus       134 g~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~vwd~  183 (392)
                      ..-.++++.. ...+..-....+-|.|.+|.+||+.|+++-. .=.-++||-
T Consensus       134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            4445556543 2333333456678999999999998776532 234567774

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.29  E-value=0.081  Score=44.37  Aligned_cols=148  Identities=18%  Similarity=0.129  Sum_probs=90.0

Q ss_pred             CeEEEEecCCCCEEEEEe---CCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEE-CCCCeee
Q 016257          114 PQKCLSFSVDGSRFAAGG---VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK-TEDGVAW  189 (392)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd-~~~~~~~  189 (392)
                      .+.+.+++++++.++...   ....++++..  +....... ....+..-.|++++...+....+...+++. ...+...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            678999999999877665   2234555443  33322222 223678889999987777666666666663 3333222


Q ss_pred             -EEEecCCCc-ceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC---Cc------eeeeeecccCCCcEEEEECCCCCE
Q 016257          190 -TFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS---TW------NKIGHKRLLRKPASVLSISLDGKY  258 (392)
Q Consensus       190 -~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~---~~------~~~~~~~~~~~~v~~~~~s~~~~~  258 (392)
                       ..+...... .|..+.++|||.++.+  +.....++.|.+--+.   .+      ............++.++|.+++.+
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~--v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L  179 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAV--VVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL  179 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEE--EEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence             222222121 7999999999998432  4445556777776543   12      111112223467899999999988


Q ss_pred             EEEEeCCC
Q 016257          259 LAMGSKDG  266 (392)
Q Consensus       259 l~~~~~dg  266 (392)
                      ++.+...+
T Consensus       180 ~V~~~~~~  187 (253)
T PF10647_consen  180 VVLGRSAG  187 (253)
T ss_pred             EEEeCCCC
Confidence            77766543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.25  E-value=0.12  Score=45.34  Aligned_cols=238  Identities=10%  Similarity=0.060  Sum_probs=117.1

Q ss_pred             CeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC---CCEEEEEeC-C-------
Q 016257           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGV-D-------  133 (392)
Q Consensus        65 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~-d-------  133 (392)
                      ..+.|+|.|||+.+++ ...|.|++++ ..+.....+................++++|+   ..+|+.... .       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            4789999999877665 6799999998 3333211111111112234567899999994   334444332 1       


Q ss_pred             -CcEEEEeCCCC-------ceee-cccC---CCCcEEEEEecCCCCeEEEEcCCC-------------cEEEEECCCCe-
Q 016257          134 -GHLRIMHWPSL-------RIIL-DEPK---AHKSVLDMDFSLDSEFLATTSTDG-------------SARIWKTEDGV-  187 (392)
Q Consensus       134 -g~i~i~d~~~~-------~~~~-~~~~---~~~~i~~i~~~~~~~~l~~~~~d~-------------~i~vwd~~~~~-  187 (392)
                       ..|.-|....+       +.+. ....   ....-..|.|.|||.+.++.+..+             .|.-.+.. ++ 
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~  159 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI  159 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence             13443444332       1111 1111   122456799999997766655332             23222321 11 


Q ss_pred             ------------eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCc--cEEEEEeCCCce------------------
Q 016257          188 ------------AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK--ALLAVYDISTWN------------------  235 (392)
Q Consensus       188 ------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d--~~i~v~d~~~~~------------------  235 (392)
                                  ....+..... ....++|+|....++   ..-.+.+  ..|.+.  ..+.                  
T Consensus       160 p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~---~~d~G~~~~dein~i--~~G~nYGWP~~~~~~~~~~~~~  233 (331)
T PF07995_consen  160 PADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLW---AADNGPDGWDEINRI--EPGGNYGWPYCEGGPKYSGPPI  233 (331)
T ss_dssp             -TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEE---EEEE-SSSSEEEEEE---TT-B--TTTBSSSCSTTSS-E
T ss_pred             CCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEE---EEccCCCCCcEEEEe--ccCCcCCCCCCcCCCCCCCCcc
Confidence                        1112222223 356789999833322   1222222  223322  1111                  


Q ss_pred             -----------eeeeecccCCCcEEEEECC-------CCCEEEEEeCCCcEEEEecCCceeee-e--eeccccCcceEEE
Q 016257          236 -----------KIGHKRLLRKPASVLSISL-------DGKYLAMGSKDGDICVVDVKKMEINH-W--SKRLHLGTSIALV  294 (392)
Q Consensus       236 -----------~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~iwd~~~~~~~~-~--~~~~~~~~~i~~~  294 (392)
                                 +...+. +...+..+.|..       .|.++++.-..+.|....++...... .  +.... ...+..+
T Consensus       234 ~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~r~~~v  311 (331)
T PF07995_consen  234 GDAPSCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGF-GGRPRDV  311 (331)
T ss_dssp             CTGSS-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTS-SS-EEEE
T ss_pred             ccccCCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccC-CCCceEE
Confidence                       111111 223455666653       34566666556778888887543222 1  11222 4479999


Q ss_pred             EEeeCCCeEEEEeCCCeEE
Q 016257          295 EFCPTQRVVLTASKEWGAM  313 (392)
Q Consensus       295 ~~s~~~~~l~~~~~dg~i~  313 (392)
                      ++.|||.++++...+|.|.
T Consensus       312 ~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  312 AQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EEETTSEEEEEE-TTTTEE
T ss_pred             EEcCCCeEEEEECCCCeEe
Confidence            9999999888888888774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.24  E-value=0.009  Score=57.77  Aligned_cols=102  Identities=25%  Similarity=0.318  Sum_probs=73.4

Q ss_pred             CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCC
Q 016257           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (392)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  153 (392)
                      .+..++.|+..|.+...|....-..  +.    ......++|++++|+.+|..++.|-.+|.|.+||+..++....+..+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~--~~----~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~  171 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGP--LH----QNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH  171 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccch--hh----cCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence            4557888888998888887654211  11    11124679999999999999999999999999999988877665554


Q ss_pred             CC---cEEEEEecCCCCeEEEEcCCCcEEEEEC
Q 016257          154 HK---SVLDMDFSLDSEFLATTSTDGSARIWKT  183 (392)
Q Consensus       154 ~~---~i~~i~~~~~~~~l~~~~~d~~i~vwd~  183 (392)
                      ..   .+..+.+..++..++++...|.  +|.+
T Consensus       172 ~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  172 GAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            44   3444555566667888877776  5654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.22  E-value=0.17  Score=49.35  Aligned_cols=206  Identities=14%  Similarity=0.085  Sum_probs=117.3

Q ss_pred             CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCC-CCCCeEEEEec----------------CCCCEEEEEeCCCcEE
Q 016257           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFS----------------VDGSRFAAGGVDGHLR  137 (392)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s----------------~~~~~l~~~~~dg~i~  137 (392)
                      +..|+.++.++.|.-.|..+++...++......... .....+.+++.                ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            457777788888888898888876665432211000 00112223332                1345788888999999


Q ss_pred             EEeCCCCceeecccCCCCcE-------------EEEEecC--CCCeEEEEcC----------CCcEEEEECCCCeeeEEE
Q 016257          138 IMHWPSLRIILDEPKAHKSV-------------LDMDFSL--DSEFLATTST----------DGSARIWKTEDGVAWTFL  192 (392)
Q Consensus       138 i~d~~~~~~~~~~~~~~~~i-------------~~i~~~~--~~~~l~~~~~----------d~~i~vwd~~~~~~~~~~  192 (392)
                      -.|.++|+.+..+.. .+.+             ..+.-.|  .+..+++++.          +|.|+-+|.++++.+-.+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999998865422 1111             1112223  2345666642          588999999999988776


Q ss_pred             ecCCC--------cc--------e-EEEEecCCCCcceEEEE-------------EEeCCccEEEEEeCCCceeeeeecc
Q 016257          193 TRNSD--------EK--------I-ELCRFSKDGTKPFLFCT-------------VQRGDKALLAVYDISTWNKIGHKRL  242 (392)
Q Consensus       193 ~~~~~--------~~--------v-~~~~~~~~~~~~~~~~~-------------~~~~~d~~i~v~d~~~~~~~~~~~~  242 (392)
                      .....        +.        + ..+++++....+|+-..             ......+.|.-.|.++++..-.++.
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            43110        00        0 12334443332221000             0011245677788888887655543


Q ss_pred             cCCC---------cEEEEECC-CCC---EEEEEeCCCcEEEEecCCceeeee
Q 016257          243 LRKP---------ASVLSISL-DGK---YLAMGSKDGDICVVDVKKMEINHW  281 (392)
Q Consensus       243 ~~~~---------v~~~~~s~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~  281 (392)
                      ....         ..-+.+.. +|+   .++.++.+|.++++|.++++.+..
T Consensus       433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            2211         11122322 553   789999999999999999987654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.20  E-value=0.048  Score=45.27  Aligned_cols=163  Identities=10%  Similarity=0.060  Sum_probs=106.3

Q ss_pred             cCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEe
Q 016257          151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (392)
Q Consensus       151 ~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d  230 (392)
                      .+.+..+.++.|+|+.+.|++......-.|+=..+|+.++++....-.....+.+..++.+     .++--.++.+.++-
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~f-----vi~dER~~~l~~~~  156 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQF-----VIVDERDRALYLFT  156 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEE-----EEEehhcceEEEEE
Confidence            3445569999999999998888777777777667888888876544344567888888875     67777788888877


Q ss_pred             CCCceeeee----------ecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeee--eeccc------cCcceE
Q 016257          231 ISTWNKIGH----------KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW--SKRLH------LGTSIA  292 (392)
Q Consensus       231 ~~~~~~~~~----------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~------~~~~i~  292 (392)
                      +........          ....+.....++|+|..+.|..+-+..-+.||..........  ....+      .-..|+
T Consensus       157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS  236 (316)
T COG3204         157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS  236 (316)
T ss_pred             EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence            664422111          111145677899999999999988887788887664331100  00011      023577


Q ss_pred             EEEEeeCCC-eEEEEeCCCeEEEEEee
Q 016257          293 LVEFCPTQR-VVLTASKEWGAMITKLT  318 (392)
Q Consensus       293 ~~~~s~~~~-~l~~~~~dg~i~iw~~~  318 (392)
                      ++.|++... +|+-+.+++.+.-.+..
T Consensus       237 gl~~~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         237 GLEFNAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             cceecCCCCcEEEEecCCceEEEEecC
Confidence            888887544 55555556555554444

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.13  E-value=0.095  Score=42.01  Aligned_cols=134  Identities=17%  Similarity=0.090  Sum_probs=79.6

Q ss_pred             cEEEEEecCCCCeEEEEcCC---------CcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEE
Q 016257          156 SVLDMDFSLDSEFLATTSTD---------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALL  226 (392)
Q Consensus       156 ~i~~i~~~~~~~~l~~~~~d---------~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i  226 (392)
                      ...+-..+|+|++++-.-.|         |.++.|-..  ..+..+... -..-..++|+.+.+..    ...-+.+..|
T Consensus       110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~-v~IsNgl~Wd~d~K~f----Y~iDsln~~V  182 (310)
T KOG4499|consen  110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNC-VGISNGLAWDSDAKKF----YYIDSLNYEV  182 (310)
T ss_pred             ccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehh-ccCCccccccccCcEE----EEEccCceEE
Confidence            56677789999985432222         233333321  111111111 1123568888777653    3556667778


Q ss_pred             EEEe--CCCcee-----eeeecc----cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEE
Q 016257          227 AVYD--ISTWNK-----IGHKRL----LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVE  295 (392)
Q Consensus       227 ~v~d--~~~~~~-----~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  295 (392)
                      .-||  ..++..     +..++.    .....-.+++..+|++.++.-..++|.-.|..+|+.+..+. .. ...|++++
T Consensus       183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik-lP-t~qitscc  260 (310)
T KOG4499|consen  183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK-LP-TPQITSCC  260 (310)
T ss_pred             eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE-cC-CCceEEEE
Confidence            7777  444432     111111    01112235566688888888888999999999999988874 34 67899999


Q ss_pred             Eee
Q 016257          296 FCP  298 (392)
Q Consensus       296 ~s~  298 (392)
                      |--
T Consensus       261 FgG  263 (310)
T KOG4499|consen  261 FGG  263 (310)
T ss_pred             ecC
Confidence            964

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.03  E-value=0.0031  Score=60.73  Aligned_cols=102  Identities=9%  Similarity=0.085  Sum_probs=76.3

Q ss_pred             CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC
Q 016257          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR  244 (392)
Q Consensus       165 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~  244 (392)
                      .+..++.|+..|.+...|+...-.......+...+|++++|+.+|..     +..|-.+|.|.+||+..++.++.+..+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~-----l~~G~~~G~V~v~D~~~~k~l~~i~e~~  172 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSL-----LLAGLGDGHVTVWDMHRAKILKVITEHG  172 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCce-----eccccCCCcEEEEEccCCcceeeeeecC
Confidence            35678889888999999986542212223345668999999999997     7888899999999999999988888777


Q ss_pred             CCcEEE---EECCCCCEEEEEeCCCcEEEEec
Q 016257          245 KPASVL---SISLDGKYLAMGSKDGDICVVDV  273 (392)
Q Consensus       245 ~~v~~~---~~s~~~~~l~~~~~dg~i~iwd~  273 (392)
                      .+.+.+   .+..++..++++...|.  +|.+
T Consensus       173 ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  173 APVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            766655   34456667777777675  5544

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.02  E-value=0.18  Score=43.18  Aligned_cols=279  Identities=13%  Similarity=0.111  Sum_probs=123.7

Q ss_pred             CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeC-CCCCeeEEEEcCCCCeEEEE
Q 016257            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE-SEGDPMTIAVNPSGDDFVCS   81 (392)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l~~~   81 (392)
                      ...++.+|.|..+. +  -.++|...         .++.-...+.......  . .... -.-...++.|..+ +.+++ 
T Consensus        15 t~~~l~dV~F~d~~-~--G~~VG~~g---------~il~T~DGG~tW~~~~--~-~~~~~~~~~l~~I~f~~~-~g~iv-   77 (302)
T PF14870_consen   15 TDKPLLDVAFVDPN-H--GWAVGAYG---------TILKTTDGGKTWQPVS--L-DLDNPFDYHLNSISFDGN-EGWIV-   77 (302)
T ss_dssp             -SS-EEEEEESSSS----EEEEETTT---------EEEEESSTTSS-EE--------S-----EEEEEEEETT-EEEEE-
T ss_pred             CCCceEEEEEecCC-E--EEEEecCC---------EEEEECCCCccccccc--c-CCCccceeeEEEEEecCC-ceEEE-
Confidence            35688999998433 2  23334331         1455444443332111  0 0110 0123567777543 34444 


Q ss_pred             eCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCce-eecccCCCCcEEEE
Q 016257           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-ILDEPKAHKSVLDM  160 (392)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~i  160 (392)
                      +..+ + ++...++...........   .-.+....+....++..++ ++..|.|+.= .+.++. ..........+..+
T Consensus        78 G~~g-~-ll~T~DgG~tW~~v~l~~---~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~  150 (302)
T PF14870_consen   78 GEPG-L-LLHTTDGGKTWERVPLSS---KLPGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTWQAVVSETSGSINDI  150 (302)
T ss_dssp             EETT-E-EEEESSTTSS-EE----T---T-SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSEEEEE-S----EEEE
T ss_pred             cCCc-e-EEEecCCCCCcEEeecCC---CCCCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCeeEcccCCcceeEeE
Confidence            4556 3 333333332222211000   0112334444444443333 3445544332 222322 22223344578899


Q ss_pred             EecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEe-CCCceeee-
Q 016257          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD-ISTWNKIG-  238 (392)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d-~~~~~~~~-  238 (392)
                      .-++||++++++.......-||--.. .-..........+..+.|.|++.      +......+.|+.=+ ....+.-. 
T Consensus       151 ~r~~dG~~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~------lw~~~~Gg~~~~s~~~~~~~~w~~  223 (302)
T PF14870_consen  151 TRSSDGRYVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGN------LWMLARGGQIQFSDDPDDGETWSE  223 (302)
T ss_dssp             EE-TTS-EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-------EEEEETTTEEEEEE-TTEEEEE--
T ss_pred             EECCCCcEEEEECcccEEEEecCCCc-cceEEccCccceehhceecCCCC------EEEEeCCcEEEEccCCCCcccccc
Confidence            99999999988877555567775322 12222233345899999999987      34445788888877 22222211 


Q ss_pred             ---eecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecc-ccCcceEEEEEeeCCCeEEEEeCCCeEEE
Q 016257          239 ---HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL-HLGTSIALVEFCPTQRVVLTASKEWGAMI  314 (392)
Q Consensus       239 ---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  314 (392)
                         ........+..++|.+++...++|+. |.+ +...+.|+.-+..... ......+.+.|.++.+-++. +.+|.+.-
T Consensus       224 ~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~  300 (302)
T PF14870_consen  224 PIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLR  300 (302)
T ss_dssp             -B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEE
T ss_pred             ccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEE
Confidence               12223345789999999888777664 533 4455666543333221 11456889999877555554 46776654


Q ss_pred             E
Q 016257          315 T  315 (392)
Q Consensus       315 w  315 (392)
                      |
T Consensus       301 ~  301 (302)
T PF14870_consen  301 Y  301 (302)
T ss_dssp             E
T ss_pred             e
Confidence            4

>PHA02713 hypothetical protein; Provisional

Probab=97.01  E-value=0.043  Score=51.84  Aligned_cols=183  Identities=9%  Similarity=-0.001  Sum_probs=88.0

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCCCceeecc--cCCCCcEEEEEecCCCCeEEEEcCCC-----cEEEEECCCCeee
Q 016257          123 DGSRFAAGGVD------GHLRIMHWPSLRIILDE--PKAHKSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVAW  189 (392)
Q Consensus       123 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~d~-----~i~vwd~~~~~~~  189 (392)
                      ++...+.|+.+      ..+..||..+.+.....  ..........  .-+++..+.|+.++     ++..||..+.+-.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            56666777643      34778888776542211  1111122222  22567777787654     4788998766432


Q ss_pred             EEEecCCC-cceEEEEecCCCCcceEEEEEEeCCc-----------------------cEEEEEeCCCce--eeeeeccc
Q 016257          190 TFLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGDK-----------------------ALLAVYDISTWN--KIGHKRLL  243 (392)
Q Consensus       190 ~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~d-----------------------~~i~v~d~~~~~--~~~~~~~~  243 (392)
                      ..-.-+.. .....++.  ++. +    .+.|+.+                       ..+..||.++.+  .+..+...
T Consensus       381 ~~~~mp~~r~~~~~~~~--~g~-I----YviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~  453 (557)
T PHA02713        381 MLPDMPIALSSYGMCVL--DQY-I----YIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG  453 (557)
T ss_pred             ECCCCCcccccccEEEE--CCE-E----EEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc
Confidence            21111111 01111221  333 2    2334432                       357788877643  22222211


Q ss_pred             CCCcEEEEECCCCCEEEEEeCC------CcEEEEecCC-ceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCC--eEEE
Q 016257          244 RKPASVLSISLDGKYLAMGSKD------GDICVVDVKK-MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW--GAMI  314 (392)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~i  314 (392)
                      .... +++ .-+++..+.|+.+      ..+..||..+ .+-...............+.+  +|++.++|+.|+  .+..
T Consensus       454 r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~  529 (557)
T PHA02713        454 TIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDT  529 (557)
T ss_pred             cccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhh
Confidence            1111 122 2356666777654      2467899887 443322111110222222332  788889999887  4555


Q ss_pred             EEee
Q 016257          315 TKLT  318 (392)
Q Consensus       315 w~~~  318 (392)
                      ||..
T Consensus       530 yd~~  533 (557)
T PHA02713        530 FNVY  533 (557)
T ss_pred             cCcc
Confidence            5544

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.99  E-value=0.12  Score=48.79  Aligned_cols=223  Identities=14%  Similarity=0.126  Sum_probs=114.5

Q ss_pred             CCCeEEEEeCCC------eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC------CcEEEEeC
Q 016257           74 SGDDFVCSTTNG------GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHW  141 (392)
Q Consensus        74 ~~~~l~~~~~d~------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i~d~  141 (392)
                      .+..++.|+.++      .+..+|..++....      ...+.....-.+++.. ++...++|+.|      .++..||.
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~------~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~  356 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS------LAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDP  356 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEee------cCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecC
Confidence            455667777663      46677776653211      1111122233444443 45677888888      35778888


Q ss_pred             CCCceeecccCCCCcEEEEEe-cCCCCeEEEEcCCC-----cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257          142 PSLRIILDEPKAHKSVLDMDF-SLDSEFLATTSTDG-----SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (392)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~i~~-~~~~~~l~~~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (392)
                      .+.+... ...-...=..... .-+|...++|+.||     ++..||.++.+-...-.  ............-+..+   
T Consensus       357 ~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~--m~~~r~~~gv~~~~g~i---  430 (571)
T KOG4441|consen  357 RTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP--MLTRRSGHGVAVLGGKL---  430 (571)
T ss_pred             CCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC--CCcceeeeEEEEECCEE---
Confidence            7776433 1111111111111 22577888898886     47778877654322211  11122222222222332   


Q ss_pred             EEEEeCCc------cEEEEEeCCCcee--eeeecccCCCcEEEEECCCCCEEEEEeCCCc-----EEEEecCCceeeeee
Q 016257          216 CTVQRGDK------ALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDGD-----ICVVDVKKMEINHWS  282 (392)
Q Consensus       216 ~~~~~~~d------~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~  282 (392)
                       .+.||.+      ..+..||..+.+-  +..+........ ++ .-++.+.+.|+.|+.     |..||..+.+.....
T Consensus       431 -Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~  507 (571)
T KOG4441|consen  431 -YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA  507 (571)
T ss_pred             -EEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence             2444422      5678888876532  222222222222 22 236778888887763     788998887755543


Q ss_pred             eccccCcceEEEEEeeCCCeEEEEeCCCeEEE
Q 016257          283 KRLHLGTSIALVEFCPTQRVVLTASKEWGAMI  314 (392)
Q Consensus       283 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  314 (392)
                      ........+..+.+  +++..+.|+.||.-.+
T Consensus       508 ~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l  537 (571)
T KOG4441|consen  508 PMTSPRSAVGVVVL--GGKLYAVGGFDGNNNL  537 (571)
T ss_pred             cCccccccccEEEE--CCEEEEEecccCcccc
Confidence            22221222222332  6778888888864443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.98  E-value=0.0032  Score=36.76  Aligned_cols=33  Identities=21%  Similarity=0.373  Sum_probs=29.4

Q ss_pred             CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce
Q 016257          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (392)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  277 (392)
                      ...|..++|+|...+||.++.+|.|.+|.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            457899999999999999999999999998 443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.96  E-value=0.17  Score=42.40  Aligned_cols=148  Identities=16%  Similarity=0.097  Sum_probs=85.0

Q ss_pred             cEEEEEecCCCCeEEEEc-CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEE-eCCC
Q 016257          156 SVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY-DIST  233 (392)
Q Consensus       156 ~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~-d~~~  233 (392)
                      .+.+.+++++++.++... .++.-.+|-...+.......  ....+....|++++..     ......+....++ +...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~-----W~v~~~~~~~~~~~~~~~   97 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWV-----WTVDDGSGGVRVVRDSAS   97 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCE-----EEEEcCCCceEEEEecCC
Confidence            688999999999877655 22333344334444333332  2226788899999663     2333334444444 3333


Q ss_pred             ceee-eeeccc--CCCcEEEEECCCCCEEEEEe---CCCcEEEEecC---Cc--eee-e--eeeccccCcceEEEEEeeC
Q 016257          234 WNKI-GHKRLL--RKPASVLSISLDGKYLAMGS---KDGDICVVDVK---KM--EIN-H--WSKRLHLGTSIALVEFCPT  299 (392)
Q Consensus       234 ~~~~-~~~~~~--~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~---~~--~~~-~--~~~~~~~~~~i~~~~~s~~  299 (392)
                      ++.. ......  ...|+.+.+||||..+|...   .++.|.+--+.   .+  ..+ .  ...... ...++.++|.++
T Consensus        98 g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~-~~~v~~v~W~~~  176 (253)
T PF10647_consen   98 GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL-LSDVTDVAWSDD  176 (253)
T ss_pred             CcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc-cCcceeeeecCC
Confidence            2221 111111  12899999999999887765   34667776543   22  111 1  111111 468999999999


Q ss_pred             CCeEEEEeCCCe
Q 016257          300 QRVVLTASKEWG  311 (392)
Q Consensus       300 ~~~l~~~~~dg~  311 (392)
                      +.+++.+...+.
T Consensus       177 ~~L~V~~~~~~~  188 (253)
T PF10647_consen  177 STLVVLGRSAGG  188 (253)
T ss_pred             CEEEEEeCCCCC
Confidence            987776665433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.96  E-value=0.045  Score=49.85  Aligned_cols=116  Identities=10%  Similarity=0.097  Sum_probs=72.6

Q ss_pred             CCeEEEEecCC----CCEEEEEeCCCcEEEEeCC-----CCceeecccCCCC---c--EEEEEecCCCCeEEEEcCCCcE
Q 016257          113 GPQKCLSFSVD----GSRFAAGGVDGHLRIMHWP-----SLRIILDEPKAHK---S--VLDMDFSLDSEFLATTSTDGSA  178 (392)
Q Consensus       113 ~~v~~~~~s~~----~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~---~--i~~i~~~~~~~~l~~~~~d~~i  178 (392)
                      ..|..+.|.|-    ...|++.-....|.+|.+.     .++.......+..   +  -..+.|+|....|++-.....-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            46899999984    2244444567889999874     2232222111111   1  2467899998888776665555


Q ss_pred             EEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC
Q 016257          179 RIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (392)
Q Consensus       179 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~  232 (392)
                      .+++++.....-.......+.|.|.+|.+||+++.    ++-+..=.-++||-.
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV----VAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV----VAVGSSLHSYIWDSA  186 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE----EEeCCeEEEEEecCc
Confidence            66676644433333334556899999999999843    333335567788854

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.94  E-value=0.0037  Score=36.48  Aligned_cols=34  Identities=18%  Similarity=0.304  Sum_probs=29.9

Q ss_pred             CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCce
Q 016257          112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI  146 (392)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~  146 (392)
                      ...|..++|+|..++||.++.+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            457999999999999999999999999998 5543

>PRK10115 protease 2; Provisional

Probab=96.91  E-value=0.47  Score=46.22  Aligned_cols=238  Identities=10%  Similarity=0.028  Sum_probs=117.0

Q ss_pred             CeeEEEEcCCCCeEEEEeCC-----CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC------
Q 016257           65 DPMTIAVNPSGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------  133 (392)
Q Consensus        65 ~v~~~~~sp~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------  133 (392)
                      .+..+.++||+++|+.+...     ..+++.|+.++.......       ..  .-..++|++|++.|+....+      
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-------~~--~~~~~~w~~D~~~~~y~~~~~~~~~~  198 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-------DN--VEPSFVWANDSWTFYYVRKHPVTLLP  198 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-------cC--cceEEEEeeCCCEEEEEEecCCCCCC
Confidence            46678899999988876432     257788887664211111       11  11469999999877665442      


Q ss_pred             CcEEEEeCCCC--ceeecccCCCCcEE-EEEecCCCCeEEEEc---CCCcEEEEECC--CCeeeEEEecCCCcceEEEEe
Q 016257          134 GHLRIMHWPSL--RIILDEPKAHKSVL-DMDFSLDSEFLATTS---TDGSARIWKTE--DGVAWTFLTRNSDEKIELCRF  205 (392)
Q Consensus       134 g~i~i~d~~~~--~~~~~~~~~~~~i~-~i~~~~~~~~l~~~~---~d~~i~vwd~~--~~~~~~~~~~~~~~~v~~~~~  205 (392)
                      ..|+.+++.++  +....+........ .+..+.++++++..+   .++.+.+++..  .+.....+..... ....+. 
T Consensus       199 ~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~-  276 (686)
T PRK10115        199 YQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD-HEYSLD-  276 (686)
T ss_pred             CEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC-CEEEEE-
Confidence            35778888777  22222222222233 333344788766443   34578888853  3332222222222 222222 


Q ss_pred             cCCCCcceEEEEEEe--CCccEEEEEeCCCceeeeeeccc--CCCcEEEEECCCCCEEEEEeCCCcEEE--EecCCceee
Q 016257          206 SKDGTKPFLFCTVQR--GDKALLAVYDISTWNKIGHKRLL--RKPASVLSISLDGKYLAMGSKDGDICV--VDVKKMEIN  279 (392)
Q Consensus       206 ~~~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~i--wd~~~~~~~  279 (392)
                      + .+..++   +.+.  .....|...++........+..+  ...+..+.++ .+.++++...+|.-++  ++..+++..
T Consensus       277 ~-~~~~ly---~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~  351 (686)
T PRK10115        277 H-YQHRFY---LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVI  351 (686)
T ss_pred             e-CCCEEE---EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceE
Confidence            2 223222   3332  23444555555521111222233  2367777777 3345555666666444  454433332


Q ss_pred             eeeeccccCcceEEEEEe--eCCC-eEEEEeC---CCeEEEEEeecC
Q 016257          280 HWSKRLHLGTSIALVEFC--PTQR-VVLTASK---EWGAMITKLTVP  320 (392)
Q Consensus       280 ~~~~~~~~~~~i~~~~~s--~~~~-~l~~~~~---dg~i~iw~~~~~  320 (392)
                      . +.... ...+..+.++  +++. ++++.+.   -+.+..+++...
T Consensus       352 ~-l~~~~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~  396 (686)
T PRK10115        352 G-IAFDD-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG  396 (686)
T ss_pred             E-ecCCC-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence            2 21111 2223334444  3333 4444332   256666666543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.90  E-value=0.2  Score=41.81  Aligned_cols=163  Identities=9%  Similarity=0.030  Sum_probs=105.4

Q ss_pred             CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEe
Q 016257           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (392)
Q Consensus        61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d  140 (392)
                      +-...+.++.|+|+.+.|++......-.|+=...++.........      -.....+.+..+|++.++--.++.+.++.
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g------~~DpE~Ieyig~n~fvi~dER~~~l~~~~  156 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG------FSDPETIEYIGGNQFVIVDERDRALYLFT  156 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc------cCChhHeEEecCCEEEEEehhcceEEEEE
Confidence            344569999999999988887777766666555666554443221      23446688888888777777788888887


Q ss_pred             CCCCceeec---------ccCC-CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeE---EEecCC------CcceE
Q 016257          141 WPSLRIILD---------EPKA-HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT---FLTRNS------DEKIE  201 (392)
Q Consensus       141 ~~~~~~~~~---------~~~~-~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~---~~~~~~------~~~v~  201 (392)
                      +........         ...+ ......++|+|....|..+-+-.-+.||.+.......   ....+.      -..+.
T Consensus       157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS  236 (316)
T COG3204         157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS  236 (316)
T ss_pred             EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence            765432211         1122 3478899999988888888777778887765332111   111110      11467


Q ss_pred             EEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257          202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (392)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~  233 (392)
                      ++.|++....+    ++.+.+++.+...|...
T Consensus       237 gl~~~~~~~~L----LVLS~ESr~l~Evd~~G  264 (316)
T COG3204         237 GLEFNAITNSL----LVLSDESRRLLEVDLSG  264 (316)
T ss_pred             cceecCCCCcE----EEEecCCceEEEEecCC
Confidence            78888776653    56777788888888764

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.79  E-value=0.0068  Score=48.10  Aligned_cols=104  Identities=16%  Similarity=0.210  Sum_probs=63.6

Q ss_pred             CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEE-EEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCC
Q 016257           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC-LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (392)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  153 (392)
                      +..+++|+.+|.|.+|+.............      ....+.+ +.--.++.+..++..||.|+.|+++.++.+...-.|
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h  143 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCS------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQH  143 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhc------ccccceeccccccccceeEEeccCCceeeeccccCceeeeeccc
Confidence            457888999999999987633221111110      1122222 222335668889999999999999887776544444


Q ss_pred             C-CcEEEEEecCCCCeEEEE--cCCCcEEEEECC
Q 016257          154 H-KSVLDMDFSLDSEFLATT--STDGSARIWKTE  184 (392)
Q Consensus       154 ~-~~i~~i~~~~~~~~l~~~--~~d~~i~vwd~~  184 (392)
                      . .++.....+..++.++.+  |.|..++.|++.
T Consensus       144 ~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  144 NFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            4 245555555555566665  666666667665

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=96.64  E-value=0.81  Score=45.28  Aligned_cols=119  Identities=16%  Similarity=0.206  Sum_probs=75.9

Q ss_pred             CCeeEEEEcC-CCCeEEEEeCCCeEEEEEEeCCcc----ceeeccccCCCC----CCCCCeEEEEecCCCCEEEEEeCCC
Q 016257           64 GDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGAT----DINLLAKKMPPL----QDAGPQKCLSFSVDGSRFAAGGVDG  134 (392)
Q Consensus        64 ~~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~----~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg  134 (392)
                      .+...++|+| +.+.||.....|...||++.....    ...........+    +....-..+.|.++-+.|++++ ..
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~  224 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RS  224 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CC
Confidence            4778999999 456899999999999999932211    111111111111    1224456888988888888876 46


Q ss_pred             cEEEEeCCCCceee--cccCCCCcEEEEEecCC--CCeEEEEcCCCcEEEEECCC
Q 016257          135 HLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTED  185 (392)
Q Consensus       135 ~i~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~  185 (392)
                      .+.++|+++.....  ........|.++.-+|.  +..++..  ...|...++..
T Consensus       225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~  277 (765)
T PF10214_consen  225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS  277 (765)
T ss_pred             ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence            78999998776532  22233347999998886  3333332  25788888876

These proteins are found in fungi.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.64  E-value=0.035  Score=54.32  Aligned_cols=148  Identities=9%  Similarity=-0.062  Sum_probs=90.8

Q ss_pred             CCeeEEEEcCCCCeEEEE--eCCCeEEEEEEeCCccceeeccc----cCCCCCCCCCeEEEEecCCCC-EEEEEeCCCcE
Q 016257           64 GDPMTIAVNPSGDDFVCS--TTNGGCKLFEVYGGATDINLLAK----KMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHL  136 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~--~~d~~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i  136 (392)
                      -++..+...+|+...++.  +.+-.|..||++.-.........    ............++.|+|.-. ..++...|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            456666677787654443  33346888998764322211111    111112234567888988432 34566778999


Q ss_pred             EEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec---CCCcceEEEEecCCCCcc
Q 016257          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---NSDEKIELCRFSKDGTKP  212 (392)
Q Consensus       137 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~  212 (392)
                      ++..+................++++|+|.|+.++.|-..|++.-|... .+....+..   .....|.++.|-....++
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl  258 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL  258 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence            988775443333333344578999999999999999999999988764 332233322   223468899998776653

>PHA02713 hypothetical protein; Provisional

Probab=96.60  E-value=0.39  Score=45.54  Aligned_cols=218  Identities=8%  Similarity=0.033  Sum_probs=99.2

Q ss_pred             cEEEEeCCCCceeecccCCCCc-EEEEEecCCCCeEEEEcCC------CcEEEEECCCCeeeEEEecCCCcc-eEEEEec
Q 016257          135 HLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLATTSTD------GSARIWKTEDGVAWTFLTRNSDEK-IELCRFS  206 (392)
Q Consensus       135 ~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~-v~~~~~~  206 (392)
                      .+..||..+.+......-.... -.+++. -++..++.|+.+      ..+..||.++.+-. .+..-.... -.+++. 
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~-  349 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAV-  349 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEE-
Confidence            5678888776543211111111 112222 256667777753      34778888766432 111111101 112222 


Q ss_pred             CCCCcceEEEEEEeCCc-----cEEEEEeCCCce--eeeeecccCCCcEEEEECCCCCEEEEEeCCC-------------
Q 016257          207 KDGTKPFLFCTVQRGDK-----ALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKDG-------------  266 (392)
Q Consensus       207 ~~~~~~~~~~~~~~~~d-----~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-------------  266 (392)
                      -++..     .+.||.+     ..+..||..+.+  .+..+.........+.  -+|+..+.|+.++             
T Consensus       350 ~~g~I-----YviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~  422 (557)
T PHA02713        350 IDDTI-----YAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSI  422 (557)
T ss_pred             ECCEE-----EEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccc
Confidence            23331     2445543     358889987643  2222221111222222  3677777777542             


Q ss_pred             ----------cEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCC------eEEEEEeecCcccccee-e-
Q 016257          267 ----------DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW------GAMITKLTVPADWKEWQ-I-  328 (392)
Q Consensus       267 ----------~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~-~-  328 (392)
                                .+..||..+.+-........  .....-...-+++..+.|+.++      .+..||......+.... + 
T Consensus       423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~~--~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~  500 (557)
T PHA02713        423 DMEEDTHSSNKVIRYDTVNNIWETLPNFWT--GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE  500 (557)
T ss_pred             cccccccccceEEEECCCCCeEeecCCCCc--ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC
Confidence                      47788888766443221111  1111122233677777777542      35566665411221111 1 


Q ss_pred             -eeeeeee-eeeceEEEEeeecc--eeeeecccccccccC
Q 016257          329 -YSLLLAL-FLASAVVFYIFFEN--SDSFWNFPVARNQHG  364 (392)
Q Consensus       329 -~~~~~~~-~~~~~~~~~~~~d~--~i~~W~~~~~~~~~~  364 (392)
                       .....+. .+.....+.++.++  .+..+|..+.+-...
T Consensus       501 ~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~  540 (557)
T PHA02713        501 SRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHI  540 (557)
T ss_pred             cccccceeEEECCEEEEEeeecceeehhhcCcccccccch
Confidence             1111122 22333444555666  577777766654433

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.57  E-value=0.38  Score=40.52  Aligned_cols=228  Identities=14%  Similarity=0.108  Sum_probs=124.3

Q ss_pred             CeeEEEEcCCCCeEEEEeCCCeEEEEEEeCC-----ccceeeccccCCCCCCCCCeEEEEecCCCC------------EE
Q 016257           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG-----ATDINLLAKKMPPLQDAGPQKCLSFSVDGS------------RF  127 (392)
Q Consensus        65 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~------------~l  127 (392)
                      ..+.|+++|.+.+-++....+...+||....     ....................+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            4678999999988787778888999998621     111111111111111234567777764322            35


Q ss_pred             EEEeCCCcEEEEeCCCCce-----eecccCC-CCc-EEEEEecC--CCCeEEEEc-CCCcEEEEECCCCeee--EEEecC
Q 016257          128 AAGGVDGHLRIMHWPSLRI-----ILDEPKA-HKS-VLDMDFSL--DSEFLATTS-TDGSARIWKTEDGVAW--TFLTRN  195 (392)
Q Consensus       128 ~~~~~dg~i~i~d~~~~~~-----~~~~~~~-~~~-i~~i~~~~--~~~~l~~~~-~d~~i~vwd~~~~~~~--~~~~~~  195 (392)
                      +.+++||+|.-|...-+..     ...+... ... ...+++..  .+.+|+.+. .+++|.+||-.-.+..  ..+..+
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP  183 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP  183 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence            6778999999998532221     1112111 232 34566554  345555544 6789999986432211  011110


Q ss_pred             ---CC------------cceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc--cCCCcEEEEECC----
Q 016257          196 ---SD------------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISL----  254 (392)
Q Consensus       196 ---~~------------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~s~----  254 (392)
                         ..            -.|+-..-.++...     -+.+..-|.|-+||+.- +.++++..  .-..-+.|+..|    
T Consensus       184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d-----~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG  257 (336)
T TIGR03118       184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRND-----EVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFG  257 (336)
T ss_pred             CCCCCCCCcceEEECCeEEEEEEecCCcccc-----cccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhC
Confidence               00            00111111222211     23444557899999874 55554422  223455677765    


Q ss_pred             --CCCEEEEEeCCCcEEEEecCCceeeeeeeccc----cCcceEEEEEee
Q 016257          255 --DGKYLAMGSKDGDICVVDVKKMEINHWSKRLH----LGTSIALVEFCP  298 (392)
Q Consensus       255 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~i~~~~~s~  298 (392)
                        .|.+|+---.||+|..||..+++.+-.+....    ....++.+.|..
T Consensus       258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence              35666665679999999999888665553322    023466777765

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.56  E-value=0.056  Score=52.99  Aligned_cols=146  Identities=11%  Similarity=-0.026  Sum_probs=90.0

Q ss_pred             cEEEEEecCCCCeEEEE--cCCCcEEEEECCCCeeeE--------E--EecCCCcceEEEEecCCCCcceEEEEEEeCCc
Q 016257          156 SVLDMDFSLDSEFLATT--STDGSARIWKTEDGVAWT--------F--LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (392)
Q Consensus       156 ~i~~i~~~~~~~~l~~~--~~d~~i~vwd~~~~~~~~--------~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (392)
                      .|..+...+|+...++.  +.+-.|..||+++-..-.        .  ..........++.|+|.-...    .+....|
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n----~av~l~d  177 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLN----SAVDLSD  177 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccch----hhhhccc
Confidence            55666667776654433  334478999987532211        0  001112235677888875432    3566678


Q ss_pred             cEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec--cccCcceEEEEEeeCCC
Q 016257          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR--LHLGTSIALVEFCPTQR  301 (392)
Q Consensus       224 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~  301 (392)
                      +.|.+..+................++++|+|.|+.++.|-..|++.-|...- +....+..  ......|.++.|-....
T Consensus       178 lsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~e  256 (1405)
T KOG3630|consen  178 LSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLSTQE  256 (1405)
T ss_pred             cchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEeccee
Confidence            8888877664333222223356789999999999999999999999886533 32222211  11147899999988777


Q ss_pred             eEEEE
Q 016257          302 VVLTA  306 (392)
Q Consensus       302 ~l~~~  306 (392)
                      ++++-
T Consensus       257 flvvy  261 (1405)
T KOG3630|consen  257 FLVVY  261 (1405)
T ss_pred             EEEEe
Confidence            66543

>PHA03098 kelch-like protein; Provisional

Probab=96.51  E-value=0.27  Score=46.49  Aligned_cols=175  Identities=9%  Similarity=-0.021  Sum_probs=79.6

Q ss_pred             CCCEEEEEeCCC------cEEEEeCCCCceeecccC--CCCcEEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeee
Q 016257          123 DGSRFAAGGVDG------HLRIMHWPSLRIILDEPK--AHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVAW  189 (392)
Q Consensus       123 ~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~  189 (392)
                      ++..++.|+.++      .+..||..+.+.......  .......+.  -+++.++.|+.+     ..+..||..+++-.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            455666666432      577888877654321111  111222222  256677777765     34777888765432


Q ss_pred             EEEecCCCcceEEEEecCCCCcceEEEEEEeCC--c----cEEEEEeCCCcee--eeeecccCCCcEEEEECCCCCEEEE
Q 016257          190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD--K----ALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAM  261 (392)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--d----~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~  261 (392)
                      ..-..+....-.+++. -++. +    .+.|+.  +    ..+..||..+.+-  +..+....... ++ ...+++..+.
T Consensus       372 ~~~~lp~~r~~~~~~~-~~~~-i----Yv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~  443 (534)
T PHA03098        372 EEPPLIFPRYNPCVVN-VNNL-I----YVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CA-IYHDGKIYVI  443 (534)
T ss_pred             eCCCcCcCCccceEEE-ECCE-E----EEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eE-EEECCEEEEE
Confidence            2111111101111222 2232 2    233442  1    4688899876432  21111111111 22 2235666666


Q ss_pred             EeCC--------CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC
Q 016257          262 GSKD--------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE  309 (392)
Q Consensus       262 ~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  309 (392)
                      |+.+        ..+.+||..+.+-...............+.  -++++++.|+.+
T Consensus       444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~  497 (534)
T PHA03098        444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDK  497 (534)
T ss_pred             CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCc
Confidence            6643        238889988766443221111011111222  266666677654

>PRK13684 Ycf48-like protein; Provisional

Probab=96.30  E-value=0.7  Score=40.67  Aligned_cols=153  Identities=15%  Similarity=0.100  Sum_probs=85.9

Q ss_pred             CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (392)
Q Consensus       154 ~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~  233 (392)
                      ...+.++.+.|++.+++++. .|.+..-.-..++.-..........++.+.+.+++..      +..+..|.+.+=..+.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~------~~vg~~G~~~~~s~d~  244 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNL------WMLARGGQIRFNDPDD  244 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCE------EEEecCCEEEEccCCC
Confidence            34788999999887766654 4654432112223333334444557899999999883      4445566665322333


Q ss_pred             ceeeeeecc----cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec-cccCcceEEEEEeeCCCeEEEEeC
Q 016257          234 WNKIGHKRL----LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR-LHLGTSIALVEFCPTQRVVLTASK  308 (392)
Q Consensus       234 ~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~  308 (392)
                      +..-.....    ....+..+.+.|++..++++ .+|.+. .....++.-..... .......+.+.|..+++.++ .+.
T Consensus       245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~  321 (334)
T PRK13684        245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQ  321 (334)
T ss_pred             CCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECC
Confidence            332211111    12457788999988766555 567554 44454443332211 11134677888877766554 556


Q ss_pred             CCeEEEEE
Q 016257          309 EWGAMITK  316 (392)
Q Consensus       309 dg~i~iw~  316 (392)
                      .|.|.-++
T Consensus       322 ~G~il~~~  329 (334)
T PRK13684        322 RGVLLRYV  329 (334)
T ss_pred             CceEEEec
Confidence            77776654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.24  E-value=1.1  Score=42.50  Aligned_cols=235  Identities=18%  Similarity=0.177  Sum_probs=111.3

Q ss_pred             eEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC-C-----eEEEEEEe
Q 016257           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-G-----GCKLFEVY   93 (392)
Q Consensus        20 ~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d-~-----~i~iw~~~   93 (392)
                      .+++.||.......-..++.|+..  ......-    ..+. +...-.+++.. ++...++|+.| |     ++..||..
T Consensus       286 ~l~~vGG~~~~~~~~~~ve~yd~~--~~~w~~~----a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~  357 (571)
T KOG4441|consen  286 KLVAVGGYNRQGQSLRSVECYDPK--TNEWSSL----APMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPR  357 (571)
T ss_pred             eEEEECCCCCCCcccceeEEecCC--cCcEeec----CCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCC
Confidence            577888876422233445555443  3222110    0111 12223344444 45677888888 3     46667766


Q ss_pred             CCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC-----cEEEEeCCCCceeecccCCCCcEEEEEe-cCCCC
Q 016257           94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPSLRIILDEPKAHKSVLDMDF-SLDSE  167 (392)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~i~~i~~-~~~~~  167 (392)
                      ..+...      .+.+.....-.+++. -+|...++|+.||     ++..||.++.+....-.-.. ....... .-+|+
T Consensus       358 ~~~W~~------~a~M~~~R~~~~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~  429 (571)
T KOG4441|consen  358 TNQWTP------VAPMNTKRSDFGVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGK  429 (571)
T ss_pred             CCceec------cCCccCccccceeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCE
Confidence            655211      111111111111111 2677788888886     47778877665432211111 2222222 22577


Q ss_pred             eEEEEcCCC------cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCcc-----EEEEEeCCCcee
Q 016257          168 FLATTSTDG------SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA-----LLAVYDISTWNK  236 (392)
Q Consensus       168 ~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~-----~i~v~d~~~~~~  236 (392)
                      ..++|+.++      ++..||..+++....-.-.....-..++.-.+ ..     .+.|+.++     ++..||..+.+-
T Consensus       430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~-~i-----YvvGG~~~~~~~~~VE~ydp~~~~W  503 (571)
T KOG4441|consen  430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNG-KI-----YVVGGFDGTSALSSVERYDPETNQW  503 (571)
T ss_pred             EEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECC-EE-----EEECCccCCCccceEEEEcCCCCce
Confidence            777887554      46788887765432211111111112333222 21     35555554     377788776443


Q ss_pred             e--eeecccCCCcEEEEECCCCCEEEEEeCCC-----cEEEEecCCcee
Q 016257          237 I--GHKRLLRKPASVLSISLDGKYLAMGSKDG-----DICVVDVKKMEI  278 (392)
Q Consensus       237 ~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~  278 (392)
                      .  ..+......+....  -+++..++|+.||     +|..||..+.+-
T Consensus       504 ~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W  550 (571)
T KOG4441|consen  504 TMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTW  550 (571)
T ss_pred             eEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCCce
Confidence            2  22222222222222  2566777787775     477777766553

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.21  E-value=0.0085  Score=56.87  Aligned_cols=210  Identities=14%  Similarity=0.118  Sum_probs=113.5

Q ss_pred             EeeCCCCCeeEEEEcC-CCCeEEEEeCCCeEEEEEEeC--CccceeeccccCCCCCCCCCeEEEEecC---CCCEEEEEe
Q 016257           58 VFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYG--GATDINLLAKKMPPLQDAGPQKCLSFSV---DGSRFAAGG  131 (392)
Q Consensus        58 ~~~~h~~~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~  131 (392)
                      .+++..+.|-.+.|-. +...++  -.-|.+.||++.-  ++....+.......  ....+.-+.|.|   +..++..+-
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p--~gs~~~~V~wcp~~~~~~~ic~~~  202 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITP--YGSDPQLVSWCPIAVNKVYICYGL  202 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCc--CCCCcceeeecccccccceeeecc
Confidence            3566778888888832 222222  2335688898753  33222222222111  122334445544   667888888


Q ss_pred             CCCcEEEEeCCCCceeecccCCCCcEEEE-----------EecCCCCeEEEEcCCCcEEEEECC-----CCeeeEEEecC
Q 016257          132 VDGHLRIMHWPSLRIILDEPKAHKSVLDM-----------DFSLDSEFLATTSTDGSARIWKTE-----DGVAWTFLTRN  195 (392)
Q Consensus       132 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~i-----------~~~~~~~~l~~~~~d~~i~vwd~~-----~~~~~~~~~~~  195 (392)
                      .++++++.++..... .-+..|...+..+           ..+|||+.++.+..||.++.|.+.     ...++..++.|
T Consensus       203 ~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph  281 (1283)
T KOG1916|consen  203 KGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH  281 (1283)
T ss_pred             CCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence            899999887754332 1122233233222           268999999999999998887653     33455555555


Q ss_pred             CCcceEEEEecCCCCc-----ceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCE------------
Q 016257          196 SDEKIELCRFSKDGTK-----PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY------------  258 (392)
Q Consensus       196 ~~~~v~~~~~~~~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~------------  258 (392)
                      .+.+-.|.-++.....     ...+.+-+...+..+++|....+++.  +......+..+. -++|+.            
T Consensus       282 d~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl--l~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~  358 (1283)
T KOG1916|consen  282 DKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL--LDKLIDGVQIVG-PHDGEVTDLSMCQWMTTR  358 (1283)
T ss_pred             CCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh--hhhcccceEeec-CCCccccchhhhHHHHHH
Confidence            4333333334433221     11222344445677999988877766  222233444444 333332            


Q ss_pred             EEEEeCCCcEEEEecCC
Q 016257          259 LAMGSKDGDICVVDVKK  275 (392)
Q Consensus       259 l~~~~~dg~i~iwd~~~  275 (392)
                      ++.-+.++.|.+|.-+.
T Consensus       359 ~v~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  359 LVSRSVDGTIKIWQNRK  375 (1283)
T ss_pred             HHHhhhHHHHHHhhcch
Confidence            22344577788885443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.18  E-value=0.41  Score=38.57  Aligned_cols=144  Identities=10%  Similarity=-0.016  Sum_probs=83.2

Q ss_pred             CCCeEEEEecCCCCEEEEEeCC----------CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEE-EEcCCCcEEE
Q 016257          112 AGPQKCLSFSVDGSRFAAGGVD----------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARI  180 (392)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~v  180 (392)
                      ....+.-..+|+|++ +.|...          |.++.|-..  ..+......-.--..++|+.+.+.+. +-+.+-+|.-
T Consensus       108 knR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a  184 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA  184 (310)
T ss_pred             hcccccCccCCCCce-eeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence            445677788999988 444321          333333321  11111112122235788998777655 4455667777


Q ss_pred             EE--CCCC-----eeeEEEecC---CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEE
Q 016257          181 WK--TEDG-----VAWTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVL  250 (392)
Q Consensus       181 wd--~~~~-----~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~  250 (392)
                      ||  ..++     +.+..+...   .......++...+|..     .++.-..++|...|..+++.+.+++.....++++
T Consensus       185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L-----~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsc  259 (310)
T KOG4499|consen  185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNL-----YVATFNGGTVQKVDPTTGKILLEIKLPTPQITSC  259 (310)
T ss_pred             eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcE-----EEEEecCcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence            77  4443     233333221   0112234555555653     3555567889999999999999999888999999


Q ss_pred             EECC-CCCEEEEEe
Q 016257          251 SISL-DGKYLAMGS  263 (392)
Q Consensus       251 ~~s~-~~~~l~~~~  263 (392)
                      +|-- +-..+++.+
T Consensus       260 cFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  260 CFGGKNLDILYVTT  273 (310)
T ss_pred             EecCCCccEEEEEe
Confidence            9963 334444433

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.14  E-value=0.55  Score=44.41  Aligned_cols=203  Identities=11%  Similarity=0.110  Sum_probs=97.8

Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeec-c--cCCCCcEEEE
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-E--PKAHKSVLDM  160 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~--~~~~~~i~~i  160 (392)
                      --.|+|++..... ..+...       ..+.+-.+.|+.+.. |++...+|++++|++-....... .  ......|..+
T Consensus        63 ~~~I~If~~sG~l-L~~~~w-------~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec  133 (829)
T KOG2280|consen   63 RPYIRIFNISGQL-LGRILW-------KHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVEC  133 (829)
T ss_pred             ceeEEEEeccccc-hHHHHh-------cCCCeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccccCceeEE
Confidence            3457888865543 222222       123788899998764 55557899999999853221110 1  1112246666


Q ss_pred             EecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcce--EEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce-ee
Q 016257          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKI--ELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KI  237 (392)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~  237 (392)
                      .+..+|-.+.+  .+|.+.+-.-.......++..-.....  .+-...+++.....  ++--...-...++-..... ..
T Consensus       134 ~~f~~GVavlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~--ll~v~~~v~~~~~q~~~~~~q~  209 (829)
T KOG2280|consen  134 RFFHNGVAVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTI--LLDVDVAVGLHICQVEESRVQL  209 (829)
T ss_pred             EEecCceEEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCccee--EEeechhhhhcccceecccccc
Confidence            66555533333  345554433222112222222111111  22222222222111  1100000000111111111 11


Q ss_pred             eeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCC
Q 016257          238 GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (392)
Q Consensus       238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  300 (392)
                      ..+......+..+..||+.++|+.-...|.|.+-+.+..+....+.... ..+...++|.-+.
T Consensus       210 ~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~-~~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  210 HALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTD-HDPPKQMAWCGND  271 (829)
T ss_pred             cccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCC-CCchHhceeecCC
Confidence            1122223567789999999999999999999999888776555443222 3344466665443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.13  E-value=0.94  Score=40.52  Aligned_cols=138  Identities=14%  Similarity=0.172  Sum_probs=74.3

Q ss_pred             CCeeEEEEcCCCCeEEEEe-----------CCC-eEEEEEEeCCccce---eeccccCCCCCCCCCeEEEEecCCCCEEE
Q 016257           64 GDPMTIAVNPSGDDFVCST-----------TNG-GCKLFEVYGGATDI---NLLAKKMPPLQDAGPQKCLSFSVDGSRFA  128 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~-----------~d~-~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  128 (392)
                      ..+..|+|.++|+.+++-.           ..+ .|.+++-.++.-..   +....      .......+++.+++ ++ 
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~------~l~~p~Gi~~~~~G-ly-   85 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE------ELSMVTGLAVAVGG-VY-   85 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec------CCCCccceeEecCC-EE-
Confidence            4577899999998776642           123 67776644332111   11111      12345789999888 44 


Q ss_pred             EEeCCCcEEEEeCCCC-----c--eeec-ccC----CCCcEEEEEecCCCCeEEEEcCC-------------------Cc
Q 016257          129 AGGVDGHLRIMHWPSL-----R--IILD-EPK----AHKSVLDMDFSLDSEFLATTSTD-------------------GS  177 (392)
Q Consensus       129 ~~~~dg~i~i~d~~~~-----~--~~~~-~~~----~~~~i~~i~~~~~~~~l~~~~~d-------------------~~  177 (392)
                      ++......++.+....     +  .+.. +..    ++.....++|.|||.+.++-+..                   |.
T Consensus        86 V~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~  165 (367)
T TIGR02604        86 VATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG  165 (367)
T ss_pred             EeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence            4444433334344211     1  1211 211    13357789999999876654421                   34


Q ss_pred             EEEEECCCCeeeEEEecCCCcceEEEEecCCCCc
Q 016257          178 ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (392)
Q Consensus       178 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (392)
                      |.-++...++. ..+..... ....++|+|++..
T Consensus       166 i~r~~pdg~~~-e~~a~G~r-np~Gl~~d~~G~l  197 (367)
T TIGR02604       166 LFRYNPDGGKL-RVVAHGFQ-NPYGHSVDSWGDV  197 (367)
T ss_pred             EEEEecCCCeE-EEEecCcC-CCccceECCCCCE
Confidence            55555544432 33333333 3578999998874

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.09  E-value=0.66  Score=38.42  Aligned_cols=219  Identities=11%  Similarity=0.025  Sum_probs=132.2

Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEE
Q 016257          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL  192 (392)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  192 (392)
                      ..-..++-.|||..-+++...+.|--.|..+++....-.+....-..|..-|||..-++-+.. .|.-.|-++.+. .++
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-t~f  139 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-TRF  139 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce-EEe
Confidence            345778888999888888888888888989988765555544566778888998876664433 455556544433 222


Q ss_pred             e---cCCCcceEEEEecCCCCcceEEEEEEeC--Cc-------cEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEE
Q 016257          193 T---RNSDEKIELCRFSKDGTKPFLFCTVQRG--DK-------ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (392)
Q Consensus       193 ~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~d-------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  260 (392)
                      .   .+.........|.+.|..     -+++.  .-       +.|++|+..          ....-..++..|||..-+
T Consensus       140 ~lp~~~a~~nlet~vfD~~G~l-----WFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwy  204 (353)
T COG4257         140 PLPLEHADANLETAVFDPWGNL-----WFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWY  204 (353)
T ss_pred             ecccccCCCcccceeeCCCccE-----EEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEE
Confidence            2   233445778889999884     22322  11       223333332          233456788899999888


Q ss_pred             EEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeeeeeeeeeeeece
Q 016257          261 MGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASA  340 (392)
Q Consensus       261 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  340 (392)
                      +.-.++.|-..|..++..............-..+--+|.|+.-++....+.+..+|-....    |..+..+....    
T Consensus       205 aslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s----W~eypLPgs~a----  276 (353)
T COG4257         205 ASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS----WIEYPLPGSKA----  276 (353)
T ss_pred             EeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc----ceeeeCCCCCC----
Confidence            8777788888887776432222111112344556567788888887777777777655332    44433333221    


Q ss_pred             EEEEeeecceeeeecc
Q 016257          341 VVFYIFFENSDSFWNF  356 (392)
Q Consensus       341 ~~~~~~~d~~i~~W~~  356 (392)
                      .-.+..-|..-+||--
T Consensus       277 rpys~rVD~~grVW~s  292 (353)
T COG4257         277 RPYSMRVDRHGRVWLS  292 (353)
T ss_pred             CcceeeeccCCcEEee
Confidence            1111223777777753

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.05  E-value=0.32  Score=45.93  Aligned_cols=117  Identities=13%  Similarity=0.206  Sum_probs=73.4

Q ss_pred             eeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEec--CCCCEEEEEeCCCcE
Q 016257           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS--VDGSRFAAGGVDGHL  136 (392)
Q Consensus        59 ~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i  136 (392)
                      +...-..+.-+.-+.-++.-++-+...++.|||...+......      .+...+.|.++.|.  |+++.+++.+..+.|
T Consensus        25 ~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~------~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v   98 (631)
T PF12234_consen   25 FETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE------SFSEDDPIRDLDWTSTPDGQSILAVGFPHHV   98 (631)
T ss_pred             EecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEee------eecCCCceeeceeeecCCCCEEEEEEcCcEE
Confidence            3333344555555554544444444557999999877632222      12356789999985  588999888889999


Q ss_pred             EEEeCC-----C----Cceeec--ccCCC-CcEEEEEecCCCCeEEEEcCCCcEEEEEC
Q 016257          137 RIMHWP-----S----LRIILD--EPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKT  183 (392)
Q Consensus       137 ~i~d~~-----~----~~~~~~--~~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~vwd~  183 (392)
                      .+|.-.     .    ...+.+  +..+. .+|.+..|.++|.+++.++  ..+.|+|-
T Consensus        99 ~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen   99 LLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             EEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence            998542     1    111111  22233 3788999999997666553  56888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=95.99  E-value=1.5  Score=41.62  Aligned_cols=251  Identities=13%  Similarity=0.114  Sum_probs=123.3

Q ss_pred             eeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCC---CCeEEEEeCC
Q 016257            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS---GDDFVCSTTN   84 (392)
Q Consensus         8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~---~~~l~~~~~d   84 (392)
                      .+..++|+...+.+.++|+.         |.-|.+.|..+-.+.-++.      -+..|.|+..-..   .+..++|-.+
T Consensus        31 vs~~~s~~sn~IdiGIS~S~---------ISsYIi~PTPKLiwsypi~------pt~iV~~~dV~~~~~~~~~~~~glt~   95 (670)
T PF10395_consen   31 VSDDFSPDSNQIDIGISGSA---------ISSYIIKPTPKLIWSYPIS------PTTIVECCDVLEKSDGKKLYCVGLTE   95 (670)
T ss_pred             eecccCCCCceEEEEeccch---------hhheecCCCcceeEeeccC------cCceEEEEEeEecCCCcEEEEEEEee
Confidence            34467888777666665554         5566666654444332222      2456777776432   2244455333


Q ss_pred             C-eEEEEEEeCCccceee-----ccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee--ecccCCCC-
Q 016257           85 G-GCKLFEVYGGATDINL-----LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII--LDEPKAHK-  155 (392)
Q Consensus        85 ~-~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~-  155 (392)
                      + .-++-.+.........     .......+.-...+-.+.|.++++.+++...+|.|.+||...+...  ......+. 
T Consensus        96 rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~  175 (670)
T PF10395_consen   96 RKKFKLLLIERKVGSTEDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSI  175 (670)
T ss_pred             CCeeEEEEEEccCccccccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccccccc
Confidence            3 3444444433100000     0000001123568899999999999999999999999999332211  11111111 


Q ss_pred             -cEEEEEecC------CCCeEEEEcC-C---CcEEEEECC-CCeeeEEEe--cCCCcceEEEEecCCCCcceEEEEEEeC
Q 016257          156 -SVLDMDFSL------DSEFLATTST-D---GSARIWKTE-DGVAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (392)
Q Consensus       156 -~i~~i~~~~------~~~~l~~~~~-d---~~i~vwd~~-~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (392)
                       -+++ .|-+      ...++++.+. +   -..+++.+. .......+.  ...........|.-....+|-  +    
T Consensus       176 ~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~--l----  248 (670)
T PF10395_consen  176 NVSYS-KFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQ--L----  248 (670)
T ss_pred             ceehh-hhhcccccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEE--E----
Confidence             1222 2322      1234444443 2   246677771 122222221  011112333334433332221  2    


Q ss_pred             CccEEEEEeCCCceeeeeeccc----C--CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee
Q 016257          222 DKALLAVYDISTWNKIGHKRLL----R--KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (392)
Q Consensus       222 ~d~~i~v~d~~~~~~~~~~~~~----~--~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  282 (392)
                      .++.|.+|++...+........    .  ..+.++. .|..+.++.+ .+++|++.|+.-...+...
T Consensus       249 ~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~-~~s~nRvLLs-~~nkIyLld~~~~siLse~  313 (670)
T PF10395_consen  249 SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK-PPSPNRVLLS-VNNKIYLLDLKFESILSEF  313 (670)
T ss_pred             eCCEEEEEEcCCceEEEEEEechhhccccccceEee-cCCCCeEEEE-cCCEEEEEeehhhhhhhhh
Confidence            5779999999887665544322    1  1222332 2333333333 3568999998765555444

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PHA03098 kelch-like protein; Provisional

Probab=95.97  E-value=0.46  Score=44.97  Aligned_cols=147  Identities=12%  Similarity=0.067  Sum_probs=69.9

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCceeecccCCCCc-EEEEEecCCCCeEEEEcCC------CcEEEEECCCCeeeE
Q 016257          123 DGSRFAAGGVD-----GHLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLATTSTD------GSARIWKTEDGVAWT  190 (392)
Q Consensus       123 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~d------~~i~vwd~~~~~~~~  190 (392)
                      ++...+.|+.+     ..+..||..+.+........... -.+++ .-+++.++.|+.+      ..+..||..+.+-..
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~  420 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK  420 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence            56677777755     34778888766543211111111 11112 2246666666632      357889987664332


Q ss_pred             EEecCCCcceEEEEecCCCCcceEEEEEEeCCc--------cEEEEEeCCCcee--eeeecccCCCcEEEEECCCCCEEE
Q 016257          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK--------ALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLA  260 (392)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d--------~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~  260 (392)
                      .-..+....-.+++. .++. +    .+.|+.+        ..+.+||..+.+-  +..+.........+.+  +++.++
T Consensus       421 ~~~~p~~r~~~~~~~-~~~~-i----yv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv  492 (534)
T PHA03098        421 GSPLPISHYGGCAIY-HDGK-I----YVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYV  492 (534)
T ss_pred             cCCCCccccCceEEE-ECCE-E----EEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEE
Confidence            111111101112222 2332 2    2334321        2488899876432  2211111112222222  667777


Q ss_pred             EEeCC-----CcEEEEecCCcee
Q 016257          261 MGSKD-----GDICVVDVKKMEI  278 (392)
Q Consensus       261 ~~~~d-----g~i~iwd~~~~~~  278 (392)
                      .|+.+     +.+.+||..+.+-
T Consensus       493 ~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        493 VGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             EcCCcCCcccceeEEEeCCCCEE
Confidence            77654     4688888877654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.95  E-value=0.79  Score=38.12  Aligned_cols=151  Identities=17%  Similarity=0.075  Sum_probs=90.2

Q ss_pred             cEEEEEecCCCCeEEEEcCCC--cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257          156 SVLDMDFSLDSEFLATTSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (392)
Q Consensus       156 ~i~~i~~~~~~~~l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~  233 (392)
                      -...+.|..++.++-+.+.-|  .|+.+|+.+++.......+...--..++...+.-      ....-.++...+||.++
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l------~qLTWk~~~~f~yd~~t  119 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKL------YQLTWKEGTGFVYDPNT  119 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEE------EEEESSSSEEEEEETTT
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEE------EEEEecCCeEEEEcccc
Confidence            356788877788888877665  6999999999887776654433334555554432      34556788999999999


Q ss_pred             ceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccc---cCcceEEEEEeeCCCeEEEEeCCC
Q 016257          234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH---LGTSIALVEFCPTQRVVLTASKEW  310 (392)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg  310 (392)
                      .+.+.++... ..-..++  .|++.|+.......|+++|.++.+....+....   .-..++-+.|- +|...|=.=...
T Consensus       120 l~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td  195 (264)
T PF05096_consen  120 LKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTD  195 (264)
T ss_dssp             TEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSS
T ss_pred             ceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCC
Confidence            8888777543 3455666  467777777667789999998877665543221   12234556664 454444333333


Q ss_pred             eEEEEE
Q 016257          311 GAMITK  316 (392)
Q Consensus       311 ~i~iw~  316 (392)
                      .|..-|
T Consensus       196 ~I~~Id  201 (264)
T PF05096_consen  196 RIVRID  201 (264)
T ss_dssp             EEEEEE
T ss_pred             eEEEEe
Confidence            333333

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.83  E-value=0.2  Score=44.91  Aligned_cols=86  Identities=13%  Similarity=0.190  Sum_probs=62.1

Q ss_pred             cEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCC-------------cceEEEEEEeCC
Q 016257          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT-------------KPFLFCTVQRGD  222 (392)
Q Consensus       156 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------~~~~~~~~~~~~  222 (392)
                      .+.++..+|++++.++...=|.|.++|+.++..++.+++..+..+.-+.....+.             ...++.++-...
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            5788999999998888777799999999999888888766554433332222211             123444677788


Q ss_pred             ccEEEEEeCCCceeeeeec
Q 016257          223 KALLAVYDISTWNKIGHKR  241 (392)
Q Consensus       223 d~~i~v~d~~~~~~~~~~~  241 (392)
                      .|.|.||.++.+..+..+.
T Consensus       389 Rg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  389 RGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             CCeEEEEecCCCCEEEEEE
Confidence            8999999999887765544

>PHA02790 Kelch-like protein; Provisional

Probab=95.77  E-value=1.2  Score=41.38  Aligned_cols=172  Identities=8%  Similarity=-0.038  Sum_probs=78.6

Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCceeecccCCCCc-EEEEEecCCCCeEEEEcCC--CcEEEEECCCCeeeEEEec
Q 016257          123 DGSRFAAGGVDG-----HLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLATTSTD--GSARIWKTEDGVAWTFLTR  194 (392)
Q Consensus       123 ~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~d--~~i~vwd~~~~~~~~~~~~  194 (392)
                      ++..+++|+.++     .+..||..+++......-.... -.+++ .-++...+.|+.+  ..+..||..+++-... ..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~-~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNM-PS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEEC-CC
Confidence            344556666542     4677888776543221111111 11222 2356677777753  3577888765533221 11


Q ss_pred             CCCcceEE-EEecCCCCcceEEEEEEeCCc---cEEEEEeCCCceee--eeecccCCCcEEEEECCCCCEEEEEeCCCcE
Q 016257          195 NSDEKIEL-CRFSKDGTKPFLFCTVQRGDK---ALLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAMGSKDGDI  268 (392)
Q Consensus       195 ~~~~~v~~-~~~~~~~~~~~~~~~~~~~~d---~~i~v~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  268 (392)
                       ...+... ....-++. +    .+.|+.+   ..+..||.++.+=.  ..+....... ++ ..-+++..+.|+   .+
T Consensus       349 -l~~~r~~~~~~~~~g~-I----YviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG---~~  417 (480)
T PHA02790        349 -LLKPRCNPAVASINNV-I----YVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVGR---NA  417 (480)
T ss_pred             -CCCCCcccEEEEECCE-E----EEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEECC---ce
Confidence             1111111 11122333 2    2444433   45678887754321  1111111111 22 223566666663   57


Q ss_pred             EEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC
Q 016257          269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE  309 (392)
Q Consensus       269 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  309 (392)
                      .+||.++.+-.......+.......+  .-+|+..+.||.+
T Consensus       418 e~ydp~~~~W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~  456 (480)
T PHA02790        418 EFYCESSNTWTLIDDPIYPRDNPELI--IVDNKLLLIGGFY  456 (480)
T ss_pred             EEecCCCCcEeEcCCCCCCccccEEE--EECCEEEEECCcC
Confidence            78998876644322111112222222  2377888888765

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.72  E-value=0.57  Score=44.27  Aligned_cols=110  Identities=16%  Similarity=0.108  Sum_probs=70.3

Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeccc-CCCCcEEEEEec--CCCCeEEEEcCCCcEEEEECCC-------
Q 016257          116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-KAHKSVLDMDFS--LDSEFLATTSTDGSARIWKTED-------  185 (392)
Q Consensus       116 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~--~~~~~l~~~~~d~~i~vwd~~~-------  185 (392)
                      .-+.-|.-++..++-+....+.|||.+.+....+.. ...+.|.+++|.  |+++.+++.+-.+.|.++-...       
T Consensus        33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~  112 (631)
T PF12234_consen   33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG  112 (631)
T ss_pred             ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence            334444444444444445679999998877443322 345689999995  5888888888889999886421       


Q ss_pred             --CeeeEEE--ecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC
Q 016257          186 --GVAWTFL--TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (392)
Q Consensus       186 --~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~  232 (392)
                        -.+++.+  ..+...+|....|.++|..      +.++ ++.+.|+|-.
T Consensus       113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~L------vV~s-GNqlfv~dk~  156 (631)
T PF12234_consen  113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTL------VVGS-GNQLFVFDKW  156 (631)
T ss_pred             cccceeEEEEeecCCCCCccceeEecCCeE------EEEe-CCEEEEECCC
Confidence              1122222  2334457899999999983      3333 4568888754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.60  E-value=1.5  Score=38.63  Aligned_cols=71  Identities=13%  Similarity=-0.003  Sum_probs=39.0

Q ss_pred             ceEEEEecCCCCcc--eEEEEEEeCCccEEEEEeCCCceeeee----ecccCCCcEEEEECCCCCEEEEEeCCCcEE
Q 016257          199 KIELCRFSKDGTKP--FLFCTVQRGDKALLAVYDISTWNKIGH----KRLLRKPASVLSISLDGKYLAMGSKDGDIC  269 (392)
Q Consensus       199 ~v~~~~~~~~~~~~--~~~~~~~~~~d~~i~v~d~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  269 (392)
                      .+..+.|.......  .-.+++..-..+.|....++....+..    +......+..+++.|||.+.++...+|.|.
T Consensus       254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             ccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            45566665443321  001134444566777777764432211    122344789999999998888877788774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.53  E-value=0.77  Score=36.36  Aligned_cols=173  Identities=16%  Similarity=0.196  Sum_probs=96.1

Q ss_pred             CCCEEEEEeC--CCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeE-EEEcCCCcEEEEECCCCeeeEEEecCCCcc
Q 016257          123 DGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTRNSDEK  199 (392)
Q Consensus       123 ~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  199 (392)
                      +|.++.+.+.  ...|++||+.+++.+....-....+..=-...-+..+ ...-.+|.-..+|.++-+++..+.-..++ 
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG-  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG-  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc-
Confidence            4555555543  3569999999988765543332122111111112222 23346788889999888887776544332 


Q ss_pred             eEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc--cCCC---cEEEEECCCCCEEEEEeCCCcEEEEecC
Q 016257          200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL--LRKP---ASVLSISLDGKYLAMGSKDGDICVVDVK  274 (392)
Q Consensus       200 v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~---v~~~~~s~~~~~l~~~~~dg~i~iwd~~  274 (392)
                       ..+  ..|+..     ++.+....+++.-|.++.........  ...+   ++.+.| -+|...|=.-.+..|...|..
T Consensus       134 -WgL--t~d~~~-----LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~  204 (262)
T COG3823         134 -WGL--TSDDKN-----LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPD  204 (262)
T ss_pred             -eee--ecCCcc-----eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCC
Confidence             333  345554     56666667777777765443322221  1222   233344 255555555555567777777


Q ss_pred             Cceeeeeeec-----------cccCcceEEEEEeeCCC-eEEEE
Q 016257          275 KMEINHWSKR-----------LHLGTSIALVEFCPTQR-VVLTA  306 (392)
Q Consensus       275 ~~~~~~~~~~-----------~~~~~~i~~~~~s~~~~-~l~~~  306 (392)
                      +|++...+..           .+ ..-.+.+++.|++. ++++|
T Consensus       205 sGrV~~widlS~L~~~~~~~~~~-~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         205 SGRVVAWIDLSGLLKELNLDKSN-DNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             CCcEEEEEEccCCchhcCccccc-cccccceeecCcCCeEEEec
Confidence            7776665521           12 34677889988874 45554

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.38  E-value=3.1  Score=40.97  Aligned_cols=191  Identities=9%  Similarity=0.034  Sum_probs=110.2

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceeecccCCCC--------cEEEEEec----------------CCCCeEEEEcCCCcEE
Q 016257          124 GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK--------SVLDMDFS----------------LDSEFLATTSTDGSAR  179 (392)
Q Consensus       124 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~i~~i~~~----------------~~~~~l~~~~~d~~i~  179 (392)
                      +..++.++.++.|.-.|.++|+.+-++.....        ....+.+.                ..++.++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            55777788889999999999887765432211        11223321                1345788888999999


Q ss_pred             EEECCCCeeeEEEecCCCcceE-------------EEEecC---CCCcceEEEEEEeC----------CccEEEEEeCCC
Q 016257          180 IWKTEDGVAWTFLTRNSDEKIE-------------LCRFSK---DGTKPFLFCTVQRG----------DKALLAVYDIST  233 (392)
Q Consensus       180 vwd~~~~~~~~~~~~~~~~~v~-------------~~~~~~---~~~~~~~~~~~~~~----------~d~~i~v~d~~~  233 (392)
                      -.|.++++....+....  .+.             .+.-.|   ++.      ++.++          .+|.|+-+|.++
T Consensus       274 ALDA~TGk~~W~fg~~G--~vdl~~~~g~~~~g~~~~ts~P~V~~g~------VIvG~~v~d~~~~~~~~G~I~A~Da~T  345 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNG--TVDLTAGMGTTPPGYYYPTSPPLVAGTT------VVIGGRVADNYSTDEPSGVIRAFDVNT  345 (764)
T ss_pred             EEECCCCCEEEEecCCC--ceeeecccCcCCCcccccccCCEEECCE------EEEEecccccccccCCCcEEEEEECCC
Confidence            99999999887653211  110             011111   121      23332          268899999999


Q ss_pred             ceeeeeeccc---------C--------CCc-EEEEECCCCCEEEEEeC------------------CCcEEEEecCCce
Q 016257          234 WNKIGHKRLL---------R--------KPA-SVLSISLDGKYLAMGSK------------------DGDICVVDVKKME  277 (392)
Q Consensus       234 ~~~~~~~~~~---------~--------~~v-~~~~~s~~~~~l~~~~~------------------dg~i~iwd~~~~~  277 (392)
                      ++.+-.+...         .        ..+ ..+++.++...++.+..                  .+.|.-.|.++++
T Consensus       346 Gkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk  425 (764)
T TIGR03074       346 GALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGK  425 (764)
T ss_pred             CcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCc
Confidence            9876443210         0        011 23455565555554321                  2456667888888


Q ss_pred             eeeeeecccc-------CcceEEEEEee-CCC---eEEEEeCCCeEEEEEeecCcc
Q 016257          278 INHWSKRLHL-------GTSIALVEFCP-TQR---VVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       278 ~~~~~~~~~~-------~~~i~~~~~s~-~~~---~l~~~~~dg~i~iw~~~~~~~  322 (392)
                      ..-.+...|.       .....-+.+.. +|+   .++.++.+|.+.+.|-.+++.
T Consensus       426 ~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  481 (764)
T TIGR03074       426 ERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP  481 (764)
T ss_pred             eEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence            7655543220       11122222332 553   788889999998888876654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.29  E-value=1.6  Score=39.13  Aligned_cols=143  Identities=9%  Similarity=-0.006  Sum_probs=75.9

Q ss_pred             CeEEEEecCCCCEEEEEe-----------CCC-cEEEEeCCC--Cce--eecccCCCCcEEEEEecCCCCeEEEEcCCCc
Q 016257          114 PQKCLSFSVDGSRFAAGG-----------VDG-HLRIMHWPS--LRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDGS  177 (392)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~-----------~dg-~i~i~d~~~--~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~  177 (392)
                      ....++|.++|+++++-.           ..+ .|.+++-.+  ++.  ...+...-.....+++.+++  |++++.. .
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~-~   91 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP-D   91 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC-e
Confidence            457889999998776642           123 676765432  221  12222223356789999888  4444444 3


Q ss_pred             EEEE-ECCCC-----ee--eE-EEecC---CCcceEEEEecCCCCcceEEEEEEeC------------------CccEEE
Q 016257          178 ARIW-KTEDG-----VA--WT-FLTRN---SDEKIELCRFSKDGTKPFLFCTVQRG------------------DKALLA  227 (392)
Q Consensus       178 i~vw-d~~~~-----~~--~~-~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~------------------~d~~i~  227 (392)
                      |..+ |....     +.  +. .+...   .......++|.|||.. |   +..++                  ..+.|.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~L-Y---v~~G~~~~~~~~~~~~~~~~~~~~~g~i~  167 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWL-Y---FNHGNTLASKVTRPGTSDESRQGLGGGLF  167 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCE-E---EecccCCCceeccCCCccCcccccCceEE
Confidence            4434 44211     11  11 12111   1224678999999863 2   12221                  014566


Q ss_pred             EEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeC
Q 016257          228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK  264 (392)
Q Consensus       228 v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  264 (392)
                      -+|....+.. .+...-.....++|+|+|+++++-..
T Consensus       168 r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       168 RYNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             EEecCCCeEE-EEecCcCCCccceECCCCCEEEEccC
Confidence            6666654432 22222234568999999988876443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.27  E-value=0.64  Score=41.98  Aligned_cols=150  Identities=15%  Similarity=0.112  Sum_probs=90.9

Q ss_pred             cCCCCeEE-EEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE--EEEEEeCCccEEEEEeCCCc-eeee
Q 016257          163 SLDSEFLA-TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL--FCTVQRGDKALLAVYDISTW-NKIG  238 (392)
Q Consensus       163 ~~~~~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~d~~i~v~d~~~~-~~~~  238 (392)
                      ..+..+|+ .++....++--|++.|+.+..+..+..  + -+.|.|..+..-+  --.+.|-.+..|.-.|.+-. ..+.
T Consensus       476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~dd--v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD--V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             cCCcceEEecCCCcccceeeecccceeeeEeecCCc--c-eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence            33445544 345556788889999999999886654  3 6777775432100  00244445555666666532 2221


Q ss_pred             eecccCCCcEEEEEC----CCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEE
Q 016257          239 HKRLLRKPASVLSIS----LDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI  314 (392)
Q Consensus       239 ~~~~~~~~v~~~~~s----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  314 (392)
                      ... .....+.-.||    ....++|+++..|.|++||.-.......+ .+. +..|..+..+.+|+++++.+.. .+.+
T Consensus       553 v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtal-P~l-G~aIk~idvta~Gk~ilaTCk~-yllL  628 (776)
T COG5167         553 VVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTAL-PGL-GDAIKHIDVTANGKHILATCKN-YLLL  628 (776)
T ss_pred             eee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcC-ccc-ccceeeeEeecCCcEEEEeecc-eEEE
Confidence            111 11122222222    23469999999999999996543333333 344 7889999999999999888766 7777


Q ss_pred             EEeec
Q 016257          315 TKLTV  319 (392)
Q Consensus       315 w~~~~  319 (392)
                      -+++.
T Consensus       629 ~d~~i  633 (776)
T COG5167         629 TDVPI  633 (776)
T ss_pred             Eeccc
Confidence            77654

>PRK13684 Ycf48-like protein; Provisional

Probab=95.20  E-value=2  Score=37.79  Aligned_cols=272  Identities=14%  Similarity=0.141  Sum_probs=127.0

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  142 (392)
                      ...++++.|....+-+++|. ++.  ||...++....+......+  ....++.++.|.++ ..+++ +..+.|..- -+
T Consensus        45 ~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~--~~~~~l~~v~~~~~-~~~~~-G~~g~i~~S-~D  116 (334)
T PRK13684         45 EANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSLDLP--EENFRLISISFKGD-EGWIV-GQPSLLLHT-TD  116 (334)
T ss_pred             CCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECccCCc--ccccceeeeEEcCC-cEEEe-CCCceEEEE-CC
Confidence            55788999986566666664 453  4444443322222111110  12234677888643 34444 445543321 12


Q ss_pred             CCceeeccc---CCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEE
Q 016257          143 SLRIILDEP---KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (392)
Q Consensus       143 ~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (392)
                      .++.-....   ........+.....+..++. +..|.|..= ...++.-..+.......+..+.+.|++..      +.
T Consensus       117 gG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-g~~G~i~~S-~DgG~tW~~~~~~~~g~~~~i~~~~~g~~------v~  188 (334)
T PRK13684        117 GGKNWTRIPLSEKLPGSPYLITALGPGTAEMA-TNVGAIYRT-TDGGKNWEALVEDAAGVVRNLRRSPDGKY------VA  188 (334)
T ss_pred             CCCCCeEccCCcCCCCCceEEEEECCCcceee-eccceEEEE-CCCCCCceeCcCCCcceEEEEEECCCCeE------EE
Confidence            222111111   11111222222222333333 334444322 22344434443334456889999998763      44


Q ss_pred             eCCccEEEE-EeCC--CceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecc--ccCcceEEE
Q 016257          220 RGDKALLAV-YDIS--TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL--HLGTSIALV  294 (392)
Q Consensus       220 ~~~d~~i~v-~d~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~i~~~  294 (392)
                      .+..|.+.. +|-.  +.+.+  .......++++.+.++++.++++ ..|.+++=....++.-......  .....+..+
T Consensus       189 ~g~~G~i~~s~~~gg~tW~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v  265 (334)
T PRK13684        189 VSSRGNFYSTWEPGQTAWTPH--QRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDL  265 (334)
T ss_pred             EeCCceEEEEcCCCCCeEEEe--eCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeE
Confidence            444554443 2222  12222  22345678899999999887765 4576543234444322211111  113457889


Q ss_pred             EEeeCCCeEEEEeCCCeEEEEEeecCccccceee-e----eeeeeeeeeceEEEEeeecceeeeec
Q 016257          295 EFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI-Y----SLLLALFLASAVVFYIFFENSDSFWN  355 (392)
Q Consensus       295 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~d~~i~~W~  355 (392)
                      .+.+++..++ ++.+|.+.. ..+.++.+..... .    ......+......+..+..|.|--|+
T Consensus       266 ~~~~~~~~~~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~  329 (334)
T PRK13684        266 AYRTPGEIWA-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV  329 (334)
T ss_pred             EEcCCCCEEE-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
Confidence            9999877554 555666543 3333333322110 0    01111223344555666666665554

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.10  E-value=2.4  Score=38.02  Aligned_cols=191  Identities=17%  Similarity=0.177  Sum_probs=87.9

Q ss_pred             eeEEEEcCCCCeEEEEe--CC----CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe--------
Q 016257           66 PMTIAVNPSGDDFVCST--TN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--------  131 (392)
Q Consensus        66 v~~~~~sp~~~~l~~~~--~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--------  131 (392)
                      ...+..-|+|+.++++-  .+    |.+.+.|-++.+....-....    .....-..+-|.|..+.+++..        
T Consensus       132 PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~----~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~  207 (461)
T PF05694_consen  132 PHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDR----GPQPFGYDFWYQPRHNVMISSEWGAPSMFE  207 (461)
T ss_dssp             EEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-----TT------EEEETTTTEEEE-B---HHHHT
T ss_pred             CceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCC----CCCCCCCCeEEcCCCCEEEEeccCChhhcc
Confidence            44455567898888753  22    346666655544332221111    1123446778888777888753        


Q ss_pred             ------------CCCcEEEEeCCCCceeecccCCCC--cEEEEEecC--CCCe-EEEEcCCCcEEEEEC-CCCee----e
Q 016257          132 ------------VDGHLRIMHWPSLRIILDEPKAHK--SVLDMDFSL--DSEF-LATTSTDGSARIWKT-EDGVA----W  189 (392)
Q Consensus       132 ------------~dg~i~i~d~~~~~~~~~~~~~~~--~i~~i~~~~--~~~~-l~~~~~d~~i~vwd~-~~~~~----~  189 (392)
                                  ...++.+||+.+.+.++.+--...  ....+.|..  +..+ ++.+.-..+|..|-- +.++-    +
T Consensus       208 ~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kV  287 (461)
T PF05694_consen  208 KGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKV  287 (461)
T ss_dssp             T---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEE
T ss_pred             cCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEE
Confidence                        235799999999888776654433  466777744  4444 333333445544433 33322    1


Q ss_pred             EEEecC--------C--------CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce---eeeeec---------
Q 016257          190 TFLTRN--------S--------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---KIGHKR---------  241 (392)
Q Consensus       190 ~~~~~~--------~--------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~---------  241 (392)
                      ..+...        .        ..-++.+..|.|.+++|    +++-..|.|+.||+....   ...+..         
T Consensus       288 i~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLY----vs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~  363 (461)
T PF05694_consen  288 IDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLY----VSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGD  363 (461)
T ss_dssp             EEE--EE--SS---GGGGGG-EE------EEE-TTS-EEE----EEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B-
T ss_pred             EECCCcccCcccccccccccccCCCceEeEEEccCCCEEE----EEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCC
Confidence            111110        0        12478899999999743    667789999999997632   222211         


Q ss_pred             -------ccCCCcEEEEECCCCCEEEEEeC
Q 016257          242 -------LLRKPASVLSISLDGKYLAMGSK  264 (392)
Q Consensus       242 -------~~~~~v~~~~~s~~~~~l~~~~~  264 (392)
                             ...+....+..|-||+.|+..++
T Consensus       364 ~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  364 HPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             -TTS------S----EEE-TTSSEEEEE--
T ss_pred             CccccccccCCCCCeEEEccCCeEEEEEee
Confidence                   01223467888999998887653

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.04  E-value=1.9  Score=36.54  Aligned_cols=205  Identities=11%  Similarity=0.003  Sum_probs=113.6

Q ss_pred             CeEEEEecCCCCEEEEEeCCCcEEEEeCC------CCc-eeecccC-----CCCcEEEEEecCCCC------------eE
Q 016257          114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWP------SLR-IILDEPK-----AHKSVLDMDFSLDSE------------FL  169 (392)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~------~~~-~~~~~~~-----~~~~i~~i~~~~~~~------------~l  169 (392)
                      .-+.++++|.+.+-++....+...+||..      ..+ .+..+..     .....+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            44789999999888887778899999986      121 2223321     123567777764322            26


Q ss_pred             EEEcCCCcEEEEECCCCee-----eEEEecC-CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeee--eec
Q 016257          170 ATTSTDGSARIWKTEDGVA-----WTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG--HKR  241 (392)
Q Consensus       170 ~~~~~d~~i~vwd~~~~~~-----~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~--~~~  241 (392)
                      +.+++||+|.-|...-...     ...+... .......+++...+...++  .++--..++|.+||-.-.+...  .+.
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~L--YaadF~~g~IDVFd~~f~~~~~~g~F~  181 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYL--YAANFRQGRIDVFKGSFRPPPLPGSFI  181 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceE--EEeccCCCceEEecCccccccCCCCcc
Confidence            7788999999998533222     1122211 1223345666654332222  2445568899999865432210  011


Q ss_pred             cc-------CCCcEE---------EEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEee------C
Q 016257          242 LL-------RKPASV---------LSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP------T  299 (392)
Q Consensus       242 ~~-------~~~v~~---------~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~------~  299 (392)
                      ..       ...|..         ..-.++++.=+.|..-|.|-+||....-+.+....+. -...+.|+..|      .
T Consensus       182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~-LNaPWG~a~APa~FG~~s  260 (336)
T TIGR03118       182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGR-LNAPWGLAIAPESFGSLS  260 (336)
T ss_pred             CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCc-ccCCceeeeChhhhCCCC
Confidence            00       001110         1111222222223334789999986544444333333 45667788766      4


Q ss_pred             CCeEEEEeCCCeEEEEEeecCc
Q 016257          300 QRVVLTASKEWGAMITKLTVPA  321 (392)
Q Consensus       300 ~~~l~~~~~dg~i~iw~~~~~~  321 (392)
                      |.+|+---.||+|..+|...+.
T Consensus       261 g~lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       261 GALLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             CCeEEeecCCceeEEecCCCCc
Confidence            5666666679999999987543

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.95  E-value=0.63  Score=44.48  Aligned_cols=119  Identities=13%  Similarity=0.107  Sum_probs=74.3

Q ss_pred             CeeEEEEcC--CCCeEEEEeCCCeEEEEEEeCCcc------------ceeeccccCCCCCCCCCeEEEEec--CCCCEEE
Q 016257           65 DPMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGAT------------DINLLAKKMPPLQDAGPQKCLSFS--VDGSRFA  128 (392)
Q Consensus        65 ~v~~~~~sp--~~~~l~~~~~d~~i~iw~~~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~  128 (392)
                      .|+.|....  +...|+.+..||.|.+|.++.--.            ...........+.....+++++++  ...++||
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence            455555543  445788999999999997632110            000000111112234688999998  7788899


Q ss_pred             EEeCCCcEEEEeCCCC--ceee-cccCCCCcEEEEEecCCC---C---eEEEEcCCCcEEEEEC
Q 016257          129 AGGVDGHLRIMHWPSL--RIIL-DEPKAHKSVLDMDFSLDS---E---FLATTSTDGSARIWKT  183 (392)
Q Consensus       129 ~~~~dg~i~i~d~~~~--~~~~-~~~~~~~~i~~i~~~~~~---~---~l~~~~~d~~i~vwd~  183 (392)
                      +++....|.||-....  +... ....+...|-+|+|-++.   .   ++++++-.|.+.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            9888888888866432  1111 111233478889986633   2   6788888999988887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.94  E-value=0.94  Score=40.34  Aligned_cols=107  Identities=6%  Similarity=0.034  Sum_probs=71.0

Q ss_pred             CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC
Q 016257           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (392)
Q Consensus        62 h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~  141 (392)
                      ..++|.++.||+|.+.||+--.+.+|.+++....+..........   .....|....|+.+ .-+|..+..| +-+|..
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck---~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v  139 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECK---TKNANILGFCWTSS-TEIAFITDQG-IEFYQV  139 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhc---cCcceeEEEEEecC-eeEEEEecCC-eEEEEE
Confidence            357999999999999999999999999999855543222221111   12346889999876 4566555444 667765


Q ss_pred             CCCce-eecccCCCCcEEEEEecCCCCeEEEEc
Q 016257          142 PSLRI-ILDEPKAHKSVLDMDFSLDSEFLATTS  173 (392)
Q Consensus       142 ~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~  173 (392)
                      ...+. ++....+.-.|.-..|.++.+.++.++
T Consensus       140 ~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  140 LPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             chhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            54333 233344445788888999887654443

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.92  E-value=2.7  Score=37.82  Aligned_cols=144  Identities=13%  Similarity=0.093  Sum_probs=81.8

Q ss_pred             eEEEEecCCCCEEEEEeCCCcEE-EEeCCCCce--eecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCe----
Q 016257          115 QKCLSFSVDGSRFAAGGVDGHLR-IMHWPSLRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV----  187 (392)
Q Consensus       115 v~~~~~s~~~~~l~~~~~dg~i~-i~d~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~----  187 (392)
                      ...+..++|+.+++.+. .|.+. -||  .++.  ..........++.+.+.+++..++++ .+|.+. +....++    
T Consensus       241 f~~v~~~~dG~~~~vg~-~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~  315 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSS-RGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEED  315 (398)
T ss_pred             eeeEEEcCCCCEEEEEC-CccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccc
Confidence            34456677887777664 44433 333  2322  11222334578999999998877766 456544 3333443    


Q ss_pred             -eeEEEecC-CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeee---cccCCCcEEEEECCCCCEEEEE
Q 016257          188 -AWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLAMG  262 (392)
Q Consensus       188 -~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~  262 (392)
                       ........ ....+..+.|.+++.      ++..+..|.+..-. ..++.-...   .........+.|.++++.+++|
T Consensus       316 ~~f~~~~~~~~~~~l~~v~~~~d~~------~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G  388 (398)
T PLN00033        316 FDFEEADIKSRGFGILDVGYRSKKE------AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG  388 (398)
T ss_pred             cceeecccCCCCcceEEEEEcCCCc------EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe
Confidence             12222211 223488899998887      57777778666654 333332222   2224567889988777666665


Q ss_pred             eCCCcEEEE
Q 016257          263 SKDGDICVV  271 (392)
Q Consensus       263 ~~dg~i~iw  271 (392)
                       .+|.|.-|
T Consensus       389 -~~G~il~~  396 (398)
T PLN00033        389 -NDGVLLRY  396 (398)
T ss_pred             -CCcEEEEe
Confidence             46766544

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.91  E-value=0.11  Score=29.35  Aligned_cols=31  Identities=13%  Similarity=0.234  Sum_probs=26.0

Q ss_pred             CCeeEEEEcCCC---CeEEEEeCCCeEEEEEEeC
Q 016257           64 GDPMTIAVNPSG---DDFVCSTTNGGCKLFEVYG   94 (392)
Q Consensus        64 ~~v~~~~~sp~~---~~l~~~~~d~~i~iw~~~~   94 (392)
                      ++|.++.|+|+.   ++|+.+-..+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999844   5888888889999999985

It contains a characteristic DLL sequence motif.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.67  E-value=4.7  Score=39.38  Aligned_cols=81  Identities=16%  Similarity=0.178  Sum_probs=55.2

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCC----------ccceee----ccccCCCCCCCCCeEEEEecCC---CCE
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG----------ATDINL----LAKKMPPLQDAGPQKCLSFSVD---GSR  126 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~----------~~~~~~----~~~~~~~~~~~~~v~~~~~s~~---~~~  126 (392)
                      -.|..+.++|+|.+|+..+..| |.|..+...          +.....    .............|..+.|+|.   +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            3688999999999999988877 777666431          110000    1111111224467899999995   578


Q ss_pred             EEEEeCCCcEEEEeCCCCc
Q 016257          127 FAAGGVDGHLRIMHWPSLR  145 (392)
Q Consensus       127 l~~~~~dg~i~i~d~~~~~  145 (392)
                      |++-..|+++|+||+...+
T Consensus       164 l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEEecCCEEEEEecCCCC
Confidence            8888999999999996543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.60  E-value=1.3  Score=39.48  Aligned_cols=136  Identities=12%  Similarity=0.211  Sum_probs=80.5

Q ss_pred             EEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee
Q 016257           68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII  147 (392)
Q Consensus        68 ~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~  147 (392)
                      .+-|....+.|++ ...|.+.=|.++........    .......++|.++.||+|.+.||+--.+.+|.+++....+..
T Consensus        27 gvFfDDaNkqlfa-vrSggatgvvvkgpndDVpi----Sfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~  101 (657)
T KOG2377|consen   27 GVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPI----SFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ  101 (657)
T ss_pred             ceeeccCcceEEE-EecCCeeEEEEeCCCCCCCc----eeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh
Confidence            3444433334433 44555777777655421111    011124679999999999999999999999999998543332


Q ss_pred             ecc----cCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee-eEEEecCCCcceEEEEecCCCCc
Q 016257          148 LDE----PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTK  211 (392)
Q Consensus       148 ~~~----~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~  211 (392)
                      ...    ......|....|+.+ .-+|..+..| +.+|.....+. ++..+. +...|.-..|.++...
T Consensus       102 l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks-~~~nvnWy~yc~et~v  167 (657)
T KOG2377|consen  102 LEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKS-HNLNVNWYMYCPETAV  167 (657)
T ss_pred             hHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhh-cccCccEEEEccccce
Confidence            221    122236999999876 4455555434 66776543322 222222 3345777788888764

>PHA02790 Kelch-like protein; Provisional

Probab=94.57  E-value=3.6  Score=38.37  Aligned_cols=146  Identities=10%  Similarity=0.017  Sum_probs=67.4

Q ss_pred             CCCCEEEEEeCC--CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCC---cEEEEECCCCeeeEEEecCC
Q 016257          122 VDGSRFAAGGVD--GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG---SARIWKTEDGVAWTFLTRNS  196 (392)
Q Consensus       122 ~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~vwd~~~~~~~~~~~~~~  196 (392)
                      -++...+.|+.+  ..+..||..+++......-...........-+++..+.|+.++   .+..||.++.+-...-....
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~  396 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY  396 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence            356666777653  4578888766543321111111111111222567777777553   46788887654332111111


Q ss_pred             CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce--eeeeecccCCCcEEEEECCCCCEEEEEeCC-----CcEE
Q 016257          197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKD-----GDIC  269 (392)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~  269 (392)
                      . .....+..-++..     .+.|   |...+||.++.+  .+..+.........+.  -+|+..++|+.+     ..+.
T Consensus       397 ~-r~~~~~~~~~~~I-----Yv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve  465 (480)
T PHA02790        397 P-HYKSCALVFGRRL-----FLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIE  465 (480)
T ss_pred             c-cccceEEEECCEE-----EEEC---CceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEE
Confidence            1 0111111223331     2333   246678876543  2222222122222222  366777777754     3466


Q ss_pred             EEecCCcee
Q 016257          270 VVDVKKMEI  278 (392)
Q Consensus       270 iwd~~~~~~  278 (392)
                      .||..+.+-
T Consensus       466 ~Yd~~~~~W  474 (480)
T PHA02790        466 VYNNRTYSW  474 (480)
T ss_pred             EEECCCCeE
Confidence            777766553

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=94.57  E-value=5.5  Score=39.65  Aligned_cols=166  Identities=11%  Similarity=0.058  Sum_probs=99.5

Q ss_pred             CCCCCeeEEEEc---C----CCCeEEEEeCCCeEEEEEEeCCcc-------ceeeccccCCCCC----CCCCeEEEEecC
Q 016257           61 ESEGDPMTIAVN---P----SGDDFVCSTTNGGCKLFEVYGGAT-------DINLLAKKMPPLQ----DAGPQKCLSFSV  122 (392)
Q Consensus        61 ~h~~~v~~~~~s---p----~~~~l~~~~~d~~i~iw~~~~~~~-------~~~~~~~~~~~~~----~~~~v~~~~~s~  122 (392)
                      .-..+|..|+|.   .    ..++|++- ....+.|+...-.+.       ...+.......+.    ...+...++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            456789999998   2    22356554 445578877322221       0111111111111    234678999999


Q ss_pred             -CCCEEEEEeCCCcEEEEeCCCCce----eecc-cCC----------CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCC
Q 016257          123 -DGSRFAAGGVDGHLRIMHWPSLRI----ILDE-PKA----------HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG  186 (392)
Q Consensus       123 -~~~~l~~~~~dg~i~i~d~~~~~~----~~~~-~~~----------~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~  186 (392)
                       +...||+....|...||++.....    .... ...          ...-..+.|.++.+.|+.++. ..+.++|+++.
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~  234 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN  234 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence             666899999999999999921110    0000 011          123457889888888888876 67999999887


Q ss_pred             eeeE-EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257          187 VAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (392)
Q Consensus       187 ~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~  233 (392)
                      .... .........|..+.-+|.... +++ ++|.   ..|...|+..
T Consensus       235 ~~~~~l~~~~~~~~IlDv~~~~~~~~-~~F-iLTs---~eiiw~~~~~  277 (765)
T PF10214_consen  235 WQTEYLVTAKTWSWILDVKRSPDNPS-HVF-ILTS---KEIIWLDVKS  277 (765)
T ss_pred             CccchhccCCChhheeeEEecCCccc-eEE-EEec---CeEEEEEccC
Confidence            6644 333344557888888887443 121 3442   4577777776

These proteins are found in fungi.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.40  E-value=0.23  Score=28.11  Aligned_cols=31  Identities=19%  Similarity=0.323  Sum_probs=25.7

Q ss_pred             CCcEEEEECCCC---CEEEEEeCCCcEEEEecCC
Q 016257          245 KPASVLSISLDG---KYLAMGSKDGDICVVDVKK  275 (392)
Q Consensus       245 ~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~  275 (392)
                      +.++++.|||+.   .+|+..-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            368899999854   4888887889999999995

It contains a characteristic DLL sequence motif.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.36  E-value=1.5  Score=32.20  Aligned_cols=119  Identities=10%  Similarity=-0.004  Sum_probs=68.3

Q ss_pred             EEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-----CCCEEEEEeCCCcEEEEeCC
Q 016257           68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-----DGSRFAAGGVDGHLRIMHWP  142 (392)
Q Consensus        68 ~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~i~d~~  142 (392)
                      .-.|......|++++..|.|.|++.................+.-...|++++-.+     +...|+.|+ ...+..||++
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~   81 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE   81 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence            3456555668888888899999987644321111111122222345677775433     345677776 5679999998


Q ss_pred             CCceeecccCCCCcEEEEEecC---CCCeEEEEcCCCcEEEEECCCCee
Q 016257          143 SLRIILDEPKAHKSVLDMDFSL---DSEFLATTSTDGSARIWKTEDGVA  188 (392)
Q Consensus       143 ~~~~~~~~~~~~~~i~~i~~~~---~~~~l~~~~~d~~i~vwd~~~~~~  188 (392)
                      ....+. ...-.+.+.++.+-.   ...-++..+.+..|.-||.+..+.
T Consensus        82 ~N~d~F-yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   82 NNSDLF-YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI  129 (136)
T ss_pred             cCchhh-hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence            776543 233345677776632   122344444456777777654433

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=94.10  E-value=4.6  Score=36.96  Aligned_cols=115  Identities=10%  Similarity=0.052  Sum_probs=61.7

Q ss_pred             CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCC------CEEEEEe---
Q 016257           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG------SRFAAGG---  131 (392)
Q Consensus        61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------~~l~~~~---  131 (392)
                      ..-...+.|+|.|||+.|++--..|.|++++..+..................+....++++|+-      .+|+...   
T Consensus        27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~  106 (454)
T TIGR03606        27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYK  106 (454)
T ss_pred             CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence            3356789999999998777654469999987544332111111001011135678999999874      2444432   


Q ss_pred             -------CCCcEEEEeCCCC-------ceeec-ccCC-CCcEEEEEecCCCCeEEEEcCC
Q 016257          132 -------VDGHLRIMHWPSL-------RIILD-EPKA-HKSVLDMDFSLDSEFLATTSTD  175 (392)
Q Consensus       132 -------~dg~i~i~d~~~~-------~~~~~-~~~~-~~~i~~i~~~~~~~~l~~~~~d  175 (392)
                             ....|.-|.+...       +.+.. +... ...-..|.|.|||.++++.+..
T Consensus       107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                   1223444544321       11211 1111 1123467899999877765543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.96  E-value=5.2  Score=38.29  Aligned_cols=174  Identities=14%  Similarity=0.169  Sum_probs=90.2

Q ss_pred             CCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe---cCCCcceEEEEecCCC
Q 016257          133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT---RNSDEKIELCRFSKDG  209 (392)
Q Consensus       133 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~  209 (392)
                      .-.|+|+++ +|+.+....-.++.+-.+.|+.+. .|++...+|++.+|++-. ..+....   ......|..+.+..+|
T Consensus        63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~G  139 (829)
T KOG2280|consen   63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNG  139 (829)
T ss_pred             ceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCc
Confidence            345888886 556665555556688899999765 566778899999999843 2222211   1112235555555555


Q ss_pred             CcceEEEEEEeCCccEEEEEeCCCceeeeeecc-c--CCCcEEEEECCCCC---EEEEEe-CCCcEEEEecCCc--eeee
Q 016257          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-L--RKPASVLSISLDGK---YLAMGS-KDGDICVVDVKKM--EINH  280 (392)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~--~~~v~~~~~s~~~~---~l~~~~-~dg~i~iwd~~~~--~~~~  280 (392)
                      -.      +....+..+.+-+...... ..+.. .  ..+-+|-+.-+++.   .++-.. ..+ ..++.....  +...
T Consensus       140 Va------vlt~~g~v~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~  211 (829)
T KOG2280|consen  140 VA------VLTVSGQVILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHA  211 (829)
T ss_pred             eE------EEecCCcEEEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccc
Confidence            42      2222223344444433221 12211 1  11112222222221   111111 111 122222222  2222


Q ss_pred             eeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257          281 WSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       281 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      .. ..  .+.+..++.||+.++|+--..+|.|.+-..+..
T Consensus       212 ~~-~~--~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~  248 (829)
T KOG2280|consen  212 LS-WP--NSSVVKISVSPNRRFLALYTETGKIWVVSIDLS  248 (829)
T ss_pred             cC-CC--CceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence            11 11  367888999999999999999999988776643

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.89  E-value=4.2  Score=35.71  Aligned_cols=106  Identities=22%  Similarity=0.237  Sum_probs=62.3

Q ss_pred             CeeEEEEcCCCCeEEEEeCC------CeEEEEEEeCCccceeec-cccC-------CCCCCCCCeEEEEecCCCCEEEEE
Q 016257           65 DPMTIAVNPSGDDFVCSTTN------GGCKLFEVYGGATDINLL-AKKM-------PPLQDAGPQKCLSFSVDGSRFAAG  130 (392)
Q Consensus        65 ~v~~~~~sp~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~-~~~~-------~~~~~~~~v~~~~~s~~~~~l~~~  130 (392)
                      ...++++.++|.++++.-.+      ..|..++.. +.....+. ....       .....+....+++++|+|+.|+++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            45588887788887776666      667777755 44333331 1111       233456789999999999977765


Q ss_pred             eC-----CC--c-------EEEE--eCCC-Cce----eecccC-----CCCcEEEEEecCCCCeEEE
Q 016257          131 GV-----DG--H-------LRIM--HWPS-LRI----ILDEPK-----AHKSVLDMDFSLDSEFLAT  171 (392)
Q Consensus       131 ~~-----dg--~-------i~i~--d~~~-~~~----~~~~~~-----~~~~i~~i~~~~~~~~l~~  171 (392)
                      .+     |+  .       ++++  |..+ ++.    ...+..     ....+..+.+-+++++|+.
T Consensus       165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            43     22  1       4454  4433 211    122221     2346788888888875553

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.89  E-value=0.45  Score=38.86  Aligned_cols=71  Identities=13%  Similarity=0.111  Sum_probs=49.5

Q ss_pred             cCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCC--------CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 016257           72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL--------QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (392)
Q Consensus        72 sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~  143 (392)
                      ..++++|++-+.+|.+++||+.+.+....... ..+.+        .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus        19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~S-i~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVS-IAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EeCCCEEEEEeCCCeEEEEECCCCeeccCCcc-HHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            34678899999999999999998875433310 00111        2456788888988887777654 57888888654


Q ss_pred             C
Q 016257          144 L  144 (392)
Q Consensus       144 ~  144 (392)
                      +
T Consensus        97 ~   97 (219)
T PF07569_consen   97 G   97 (219)
T ss_pred             c
Confidence            3

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.88  E-value=0.59  Score=38.15  Aligned_cols=67  Identities=15%  Similarity=0.215  Sum_probs=49.3

Q ss_pred             ecCCCCEEEEEeCCCcEEEEeCCCCceeecc------c--------CCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCC
Q 016257          120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDE------P--------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED  185 (392)
Q Consensus       120 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~--------~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~  185 (392)
                      +..++++|++.+.+|.+++||+.+++.+...      .        .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4456889999999999999999987764332      1        2334688888888887776655 57888898754


Q ss_pred             Ce
Q 016257          186 GV  187 (392)
Q Consensus       186 ~~  187 (392)
                      +.
T Consensus        97 ~~   98 (219)
T PF07569_consen   97 GC   98 (219)
T ss_pred             ce
Confidence            43

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.77  E-value=5.2  Score=36.47  Aligned_cols=148  Identities=14%  Similarity=0.084  Sum_probs=90.3

Q ss_pred             EEecCCCCEEEE-EeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCC-------eEEEEcCCCcEEEEECCC-Cee
Q 016257          118 LSFSVDGSRFAA-GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-------FLATTSTDGSARIWKTED-GVA  188 (392)
Q Consensus       118 ~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-------~l~~~~~d~~i~vwd~~~-~~~  188 (392)
                      +-...|.++|+. |.....++-.|++.|+.+.....+...  -+.|.|+.+       .-++|-.+..|.-.|.+- +..
T Consensus       473 mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNK  550 (776)
T COG5167         473 MLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNK  550 (776)
T ss_pred             eeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCc
Confidence            334445555544 555667888888888887666555443  466777532       123344455565566553 222


Q ss_pred             eEEEecC---CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC
Q 016257          189 WTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD  265 (392)
Q Consensus       189 ~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  265 (392)
                      +......   ......+..-..+|-      ++.++..|-|++||.-..+....+.+.+..|..+..+.+|+++++.+. 
T Consensus       551 i~v~esKdY~tKn~Fss~~tTesGy------Ia~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-  623 (776)
T COG5167         551 IKVVESKDYKTKNKFSSGMTTESGY------IAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-  623 (776)
T ss_pred             eeeeeehhccccccccccccccCce------EEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-
Confidence            2222111   111222333333333      799999999999997655555566777888999999999999887774 


Q ss_pred             CcEEEEecC
Q 016257          266 GDICVVDVK  274 (392)
Q Consensus       266 g~i~iwd~~  274 (392)
                      ..+.+-|++
T Consensus       624 ~yllL~d~~  632 (776)
T COG5167         624 NYLLLTDVP  632 (776)
T ss_pred             ceEEEEecc
Confidence            467777764

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=93.61  E-value=7.2  Score=37.71  Aligned_cols=92  Identities=17%  Similarity=0.162  Sum_probs=52.6

Q ss_pred             EEEEecCCCCeEEEEcCCC-----cEEEEECCCCeeeEE--EecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEe
Q 016257          158 LDMDFSLDSEFLATTSTDG-----SARIWKTEDGVAWTF--LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (392)
Q Consensus       158 ~~i~~~~~~~~l~~~~~d~-----~i~vwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d  230 (392)
                      ..+.|-|.|..+++-..||     .|.++.- +|-....  +..+..+.+..++|+-...      +......+.+.+|-
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~------vlav~~~n~~~lwt  322 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLST------VLAVAEGNLLKLWT  322 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHH------HHHHhhcceEEEEE
Confidence            3488999999999877554     2445542 2211111  1222334566677776655      34445567899997


Q ss_pred             CCCceeeeeecccCCCcEEEEECCCC
Q 016257          231 ISTWNKIGHKRLLRKPASVLSISLDG  256 (392)
Q Consensus       231 ~~~~~~~~~~~~~~~~v~~~~~s~~~  256 (392)
                      ..+..-.......-..+.-+.|+|..
T Consensus       323 tkNyhWYLK~e~~ip~~s~vkwhpe~  348 (1243)
T COG5290         323 TKNYHWYLKVERQIPGISYVKWHPEE  348 (1243)
T ss_pred             ccceEEEEEEeecCCCcceeeecccc
Confidence            76543322222233456667888854

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=93.39  E-value=5.1  Score=35.11  Aligned_cols=65  Identities=6%  Similarity=0.038  Sum_probs=32.4

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCcee---ecccCCCCcE--EEEEecCCCCeEEEEcCC-----CcEEEEECCCCe
Q 016257          123 DGSRFAAGGVD-----GHLRIMHWPSLRII---LDEPKAHKSV--LDMDFSLDSEFLATTSTD-----GSARIWKTEDGV  187 (392)
Q Consensus       123 ~~~~l~~~~~d-----g~i~i~d~~~~~~~---~~~~~~~~~i--~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~  187 (392)
                      ++.+++.|+.+     ..+..+|+.+.+..   .....-..+.  .+++.. +++..+.|+..     ..+..||+++.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            45566666654     35667777665531   1111111111  122222 45666666642     357888887664


Q ss_pred             e
Q 016257          188 A  188 (392)
Q Consensus       188 ~  188 (392)
                      -
T Consensus       151 W  151 (323)
T TIGR03548       151 W  151 (323)
T ss_pred             e
Confidence            3

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.19  E-value=6.3  Score=35.58  Aligned_cols=145  Identities=15%  Similarity=0.109  Sum_probs=80.2

Q ss_pred             EEEEEecCCCCeEEEEcCCCcEE-EEECCCCee-eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc
Q 016257          157 VLDMDFSLDSEFLATTSTDGSAR-IWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (392)
Q Consensus       157 i~~i~~~~~~~~l~~~~~d~~i~-vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~  234 (392)
                      ...+..++++.+++.+.. |.+. -||  .+.. -..........+..+.+.+++..      +..+..|.+..- ...+
T Consensus       241 f~~v~~~~dG~~~~vg~~-G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l------~l~g~~G~l~~S-~d~G  310 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSR-GNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGL------WLLTRGGGLYVS-KGTG  310 (398)
T ss_pred             eeeEEEcCCCCEEEEECC-ccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCE------EEEeCCceEEEe-cCCC
Confidence            344566778777776654 4433 333  2222 12333334456889999999883      445556665443 2222


Q ss_pred             e-----eeeeecc--cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee--ccccCcceEEEEEeeCCCeEEE
Q 016257          235 N-----KIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK--RLHLGTSIALVEFCPTQRVVLT  305 (392)
Q Consensus       235 ~-----~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~  305 (392)
                      +     .......  ....+.++.+.+++..+++| .+|.+..- ...++.-....  ..- ....+.+.|.++++.+++
T Consensus       311 ~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~-~~~ly~v~f~~~~~g~~~  387 (398)
T PLN00033        311 LTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNI-AANLYSVKFFDDKKGFVL  387 (398)
T ss_pred             CcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCC-CcceeEEEEcCCCceEEE
Confidence            2     1111111  22458889999887766655 56766555 34444322221  111 457889999877665555


Q ss_pred             EeCCCeEEEE
Q 016257          306 ASKEWGAMIT  315 (392)
Q Consensus       306 ~~~dg~i~iw  315 (392)
                      | .+|.|.-|
T Consensus       388 G-~~G~il~~  396 (398)
T PLN00033        388 G-NDGVLLRY  396 (398)
T ss_pred             e-CCcEEEEe
Confidence            4 56666443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.17  E-value=8.7  Score=37.17  Aligned_cols=100  Identities=17%  Similarity=0.162  Sum_probs=67.5

Q ss_pred             EEEeCCccEEEEEeCCCc-----------e---------eeeeecccCCCcEEEEEC--CCCCEEEEEeCCCcEEEEecC
Q 016257          217 TVQRGDKALLAVYDISTW-----------N---------KIGHKRLLRKPASVLSIS--LDGKYLAMGSKDGDICVVDVK  274 (392)
Q Consensus       217 ~~~~~~d~~i~v~d~~~~-----------~---------~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~iwd~~  274 (392)
                      ++.+.+||.|.+|.++.-           +         +...+ ......+.++++  ...++||+++....|.||-..
T Consensus       117 Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~  195 (717)
T PF08728_consen  117 LLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFA  195 (717)
T ss_pred             EEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEe
Confidence            688899999999976320           0         01111 124577889998  778899999888888887554


Q ss_pred             Cc--eeeeeeeccccCcceEEEEEeeCC---C---eEEEEeCCCeEEEEEee
Q 016257          275 KM--EINHWSKRLHLGTSIALVEFCPTQ---R---VVLTASKEWGAMITKLT  318 (392)
Q Consensus       275 ~~--~~~~~~~~~~~~~~i~~~~~s~~~---~---~l~~~~~dg~i~iw~~~  318 (392)
                      ..  +........+ ...|.+++|-++.   .   +|++++-.|.+.+|++.
T Consensus       196 l~~~r~~~~~s~~~-~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  196 LVDERFYHVPSHQH-SHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             cccccccccccccc-ccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            42  2111111123 5678999998754   2   78889999999999884

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=92.93  E-value=0.84  Score=40.62  Aligned_cols=164  Identities=13%  Similarity=0.073  Sum_probs=92.5

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeE-EEEecCCCCEEEEEeCCCcEEEE-e
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGGVDGHLRIM-H  140 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~i~-d  140 (392)
                      ...|..+-..|||+.|+.-+. .++.++++.+.....+......+. +....|+ .+..-..|..+++++.||-|.-| |
T Consensus       220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg-~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPG-DSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCC-chHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence            345777888999998887655 568999987765432211111000 0001122 22223456678888999998877 4


Q ss_pred             CCCC-ceee----cccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257          141 WPSL-RIIL----DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (392)
Q Consensus       141 ~~~~-~~~~----~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (392)
                      .+.+ +...    .+.-...++.-+.-..+.+-+++-+.+|++.++.....+.+-. ....+ .+.-+++||.+.+    
T Consensus       298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~-~~~~~~~Sp~~~~----  371 (733)
T COG4590         298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQ-APQLVAMSPNQAY----  371 (733)
T ss_pred             eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhc-CcceeeeCcccch----
Confidence            4332 2111    1111112333333233445577788888888887644443322 11122 4677899999986    


Q ss_pred             EEEEeCCccEEEEEeCCCcee
Q 016257          216 CTVQRGDKALLAVYDISTWNK  236 (392)
Q Consensus       216 ~~~~~~~d~~i~v~d~~~~~~  236 (392)
                        ....+.+.++++.+++..+
T Consensus       372 --Ll~e~~gki~~~~l~Nr~P  390 (733)
T COG4590         372 --LLSEDQGKIRLAQLENRNP  390 (733)
T ss_pred             --heeecCCceEEEEecCCCC
Confidence              4445667899988876443

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.88  E-value=0.017  Score=51.22  Aligned_cols=139  Identities=15%  Similarity=0.222  Sum_probs=93.9

Q ss_pred             eEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEE-EEcCCCcEEEEECCCCeeeEEEe
Q 016257          115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAWTFLT  193 (392)
Q Consensus       115 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~vwd~~~~~~~~~~~  193 (392)
                      .....|-+++.-++.++.+..+..||-. ++... .....+....++|..++..++ .+-..+.+.+||+.+.. .+++.
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~l-e~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-tqqLE  113 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVIL-ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQLE  113 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhh-cceec-ccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HHHHh
Confidence            3455677877778888888889999843 33322 223345667888988877644 45567899999996543 23333


Q ss_pred             cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEE
Q 016257          194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (392)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  261 (392)
                      ......-.-+.|++....     ++.+...+.+.+++..+.+.+.....|...++++++.+.+..+..
T Consensus       114 ~gg~~s~sll~wsKg~~e-----l~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~  176 (615)
T KOG2247|consen  114 SGGTSSKSLLAWSKGTPE-----LVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILC  176 (615)
T ss_pred             ccCcchHHHHhhccCCcc-----ccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeec
Confidence            222222333778888776     577778899999999877665555557788999999987654443

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=92.81  E-value=5.1  Score=34.11  Aligned_cols=117  Identities=13%  Similarity=0.154  Sum_probs=67.6

Q ss_pred             cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEc------CCCcEEEEECCCCeeeEEEecC----CCcceEEEE
Q 016257          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS------TDGSARIWKTEDGVAWTFLTRN----SDEKIELCR  204 (392)
Q Consensus       135 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~------~d~~i~vwd~~~~~~~~~~~~~----~~~~v~~~~  204 (392)
                      .|.+||..+.+...--..-.+.|+++.|..+.+.++.|.      ....+..||..+..- ..+...    -.+++..+.
T Consensus        17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~~   95 (281)
T PF12768_consen   17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTALT   95 (281)
T ss_pred             EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEEE
Confidence            489999887665543334456899999987666676664      345688999876643 222221    235677777


Q ss_pred             ecCCCCcceEEEEEEeCCccEEEEEeCCCceeeee-ecccCCCcEEEEE
Q 016257          205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSI  252 (392)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~  252 (392)
                      +..+....+....-....+..|..||=.+...+.. .......|..+.+
T Consensus        96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~  144 (281)
T PF12768_consen   96 FISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV  144 (281)
T ss_pred             eeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence            75443322211111133456788888776665544 2222344555544

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=92.79  E-value=12  Score=37.59  Aligned_cols=67  Identities=7%  Similarity=-0.011  Sum_probs=46.1

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          250 LSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       250 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      .++.|-..++++|- ...+++||+...++++.....+....|+.+.+  .+..++.|...-++.++..+.
T Consensus       939 ~Ai~~f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~ 1005 (1205)
T KOG1898|consen  939 GAICPFQGRVLAGV-GRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRR 1005 (1205)
T ss_pred             eEEeccCCEEEEec-ccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEec
Confidence            56678776766665 45799999988877665433322556777776  556788887777777776664

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.79  E-value=11  Score=37.44  Aligned_cols=69  Identities=14%  Similarity=0.065  Sum_probs=42.9

Q ss_pred             EecCCCCEEEEEeCCCcEEEEeCCCCceee---c------c--cCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 016257          119 SFSVDGSRFAAGGVDGHLRIMHWPSLRIIL---D------E--PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV  187 (392)
Q Consensus       119 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~---~------~--~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~  187 (392)
                      ++..-|+.+..|+.+|.+.+|.+.+.....   .      +  .-+..+|..+...+.-..+++- .|+.+.++++.+.+
T Consensus        21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~~~   99 (877)
T KOG2063|consen   21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPELE   99 (877)
T ss_pred             HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCccc
Confidence            344457899999999999999886542110   0      0  0112456666666544444433 46788888887665


Q ss_pred             e
Q 016257          188 A  188 (392)
Q Consensus       188 ~  188 (392)
                      .
T Consensus       100 ~  100 (877)
T KOG2063|consen  100 P  100 (877)
T ss_pred             c
Confidence            5

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.77  E-value=0.018  Score=51.07  Aligned_cols=143  Identities=12%  Similarity=0.062  Sum_probs=96.8

Q ss_pred             EEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceee
Q 016257          158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI  237 (392)
Q Consensus       158 ~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~  237 (392)
                      ....|-|.+.-++.++.+..+..||-... ......  .....-.++|..++...    ++.+...+.+.+||+.+....
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~n--~tg~aldm~wDkegdvl----avlAek~~piylwd~n~eytq  110 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILELN--PTGKALDMAWDKEGDVL----AVLAEKTGPIYLWDVNSEYTQ  110 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhcc-eecccC--CchhHhhhhhccccchh----hhhhhcCCCeeechhhhhhHH
Confidence            34568887777888888888999986433 222222  22345677888877753    456667788999999864432


Q ss_pred             eeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCC
Q 016257          238 GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW  310 (392)
Q Consensus       238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  310 (392)
                      +.-.+....-.-+.|++.+..++.+...|.+.|++..+....... ..| ...+++++|.+.+.. +.++.|.
T Consensus       111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~-Gkh-~RRgtq~av~lEd~v-il~dcd~  180 (615)
T KOG2247|consen  111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM-GKH-QRRGTQIAVTLEDYV-ILCDCDN  180 (615)
T ss_pred             HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhh-ccc-ccceeEEEeccccee-eecCcHH
Confidence            222222222333789999999999999999999998876655443 126 788999999998754 4455553

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=92.65  E-value=7.3  Score=34.92  Aligned_cols=107  Identities=12%  Similarity=0.054  Sum_probs=62.4

Q ss_pred             eEEEEcCCCcEEEEECCCCeeeEEEecCC-CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC-C
Q 016257          168 FLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-K  245 (392)
Q Consensus       168 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~  245 (392)
                      .++.+..+|.|.-.|.++++.+-...... ...+..-.+..+|+      ++.++.++.++.+|.++++.+-...... .
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~------i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~  143 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK------IYVGSWDGKLYALDASTGTLVWSRNVGGSP  143 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe------EEEecccceEEEEECCCCcEEEEEecCCCe
Confidence            45555677888888887777543222111 11233333334777      6888888899999998888775555444 1


Q ss_pred             CcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeee
Q 016257          246 PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW  281 (392)
Q Consensus       246 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  281 (392)
                      .+.....-.+ ..+..++.++.+.-.|..+++..-.
T Consensus       144 ~~~~~~v~~~-~~v~~~s~~g~~~al~~~tG~~~W~  178 (370)
T COG1520         144 YYASPPVVGD-GTVYVGTDDGHLYALNADTGTLKWT  178 (370)
T ss_pred             EEecCcEEcC-cEEEEecCCCeEEEEEccCCcEEEE
Confidence            1111111123 3344444678888888887776444

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=92.43  E-value=9.1  Score=35.53  Aligned_cols=231  Identities=14%  Similarity=0.049  Sum_probs=110.6

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~  143 (392)
                      .+|..+..+-.| .|..|+.+| +++.+.+..+......      .-..+.|..+.-..+| .+-.|+.+|..+. ..+.
T Consensus       206 k~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn~~~------~lp~~~I~ll~qD~qG-~lWiGTenGl~r~-~l~r  275 (671)
T COG3292         206 KAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASNWGP------MLPSGNILLLVQDAQG-ELWIGTENGLWRT-RLPR  275 (671)
T ss_pred             hhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccccCC------CCcchheeeeecccCC-CEEEeecccceeE-ecCC
Confidence            345555544444 577788888 8887776633211110      0122344444444444 4555666664433 3322


Q ss_pred             Cce-eecccCCC--CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCC--CCcceEEEEE
Q 016257          144 LRI-ILDEPKAH--KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD--GTKPFLFCTV  218 (392)
Q Consensus       144 ~~~-~~~~~~~~--~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~  218 (392)
                      ... ......+.  ..|.++..+.+|. +-+++.++.+++-+. .-.....+.......+..++..|.  +..     +.
T Consensus       276 q~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~a-~w~~ma~in~~dG~v~~~~~~a~~ll~~~-----v~  348 (671)
T COG3292         276 QGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLTA-DWKRMAVINDSDGGVSQYEAVAPALLSWG-----VR  348 (671)
T ss_pred             CCccccccccCCccccccceeeccCCC-EeeeccCceEEEecc-hhhheeeeecCCCchhhhhccCchhcccc-----ee
Confidence            222 22222222  2566666666665 555665665554332 122222222211112222222221  111     11


Q ss_pred             EeCCccEEEEEeCCCceeeeee-cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCC-ceeeeeeeccccCcceEEEEE
Q 016257          219 QRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK-MEINHWSKRLHLGTSIALVEF  296 (392)
Q Consensus       219 ~~~~d~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~  296 (392)
                      ....-+.+.+-+-.++..+... ......|+.+.+..+| .+-.|+..+-+..|+.++ +...... .+...++|..+.=
T Consensus       349 ~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~-agl~ss~V~aive  426 (671)
T COG3292         349 QLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDED-AGLPSSEVSAIVE  426 (671)
T ss_pred             eccccceEEEecCCCCcEEEEeeeccccccchhhhccCC-cEEEEecccchhhhccCCcccccccc-cCCcccceeeeee
Confidence            1112223444444444443332 2223556666776644 455556554477777776 3333333 2223678888888


Q ss_pred             eeCCCeEEEEeCCCeEEE
Q 016257          297 CPTQRVVLTASKEWGAMI  314 (392)
Q Consensus       297 s~~~~~l~~~~~dg~i~i  314 (392)
                      .|+++ |..|+.+|.++.
T Consensus       427 d~dns-LWIGTs~Glvk~  443 (671)
T COG3292         427 DPDNS-LWIGTSGGLVKR  443 (671)
T ss_pred             cCCCC-EEEeccCCeEec
Confidence            88888 778888877654

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.37  E-value=1.1  Score=35.05  Aligned_cols=31  Identities=16%  Similarity=0.155  Sum_probs=25.6

Q ss_pred             CCcEEEEECCCC------CEEEEEeCCCcEEEEecCC
Q 016257          245 KPASVLSISLDG------KYLAMGSKDGDICVVDVKK  275 (392)
Q Consensus       245 ~~v~~~~~s~~~------~~l~~~~~dg~i~iwd~~~  275 (392)
                      ..+..++|||.|      -+|++.+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378899999954      4688899999999998664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=92.35  E-value=8.9  Score=35.19  Aligned_cols=55  Identities=13%  Similarity=0.058  Sum_probs=36.6

Q ss_pred             CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee--eEEEe----cCCCcceEEEEecCCC
Q 016257          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLT----RNSDEKIELCRFSKDG  209 (392)
Q Consensus       155 ~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~----~~~~~~v~~~~~~~~~  209 (392)
                      .....|+|.||+++|++--..|.|++++..++..  +..+.    .........|+++|+-
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            4567899999998776655469999998655432  11111    1123457899999985

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.28  E-value=7.4  Score=34.15  Aligned_cols=148  Identities=18%  Similarity=0.190  Sum_probs=81.6

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCe------EEEEEEeCCc-cceeeccccCCCCC---------CCCCeEEEEecCCCCE
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGG------CKLFEVYGGA-TDINLLAKKMPPLQ---------DAGPQKCLSFSVDGSR  126 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~------i~iw~~~~~~-~~~~~~~~~~~~~~---------~~~~v~~~~~s~~~~~  126 (392)
                      -+....+.+.|++..+++.+.+|.      +..+++.... ............+.         ..-...++++.++|.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            356788999876666666677777      6666655411 00000000000000         0113457888778877


Q ss_pred             EEEEeCC------CcEEEEeCCCCceeecc---------------cCCCCcEEEEEecCCCCeEEEEcC-----CC--c-
Q 016257          127 FAAGGVD------GHLRIMHWPSLRIILDE---------------PKAHKSVLDMDFSLDSEFLATTST-----DG--S-  177 (392)
Q Consensus       127 l~~~~~d------g~i~i~d~~~~~~~~~~---------------~~~~~~i~~i~~~~~~~~l~~~~~-----d~--~-  177 (392)
                      +++.-.+      ..|+.++.. ++....+               ........+++++|+|+.|+++.+     |+  . 
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            7776556      677778765 4432222               112236889999999996666532     22  1 


Q ss_pred             ------EEE--EECCC-CeeeEEE--ecC------CCcceEEEEecCCCCc
Q 016257          178 ------ARI--WKTED-GVAWTFL--TRN------SDEKIELCRFSKDGTK  211 (392)
Q Consensus       178 ------i~v--wd~~~-~~~~~~~--~~~------~~~~v~~~~~~~~~~~  211 (392)
                            +++  ||..+ ++....+  ...      ....+..+.+-++++.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~l  228 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRL  228 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcE
Confidence                  444  44443 2222222  111      2346888999999884

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.02  E-value=4.9  Score=36.79  Aligned_cols=33  Identities=12%  Similarity=0.242  Sum_probs=21.6

Q ss_pred             ceEEEEEeeCC---CeEEEEeCCCeEEEEEeecCcc
Q 016257          290 SIALVEFCPTQ---RVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       290 ~i~~~~~s~~~---~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                      .+..++|+|+.   ..|..-+.|+.||+|++.....
T Consensus       167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             eeeeccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence            45566677764   4666666777777777765544

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.95  E-value=5.6  Score=32.00  Aligned_cols=104  Identities=9%  Similarity=0.080  Sum_probs=60.8

Q ss_pred             CEEEEEeCCCcEEEEeCCCCc-eeecccCCCCcEEEEEecCCCCeEEEEcCC---C---cEEEE---ECC--CCee----
Q 016257          125 SRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDFSLDSEFLATTSTD---G---SARIW---KTE--DGVA----  188 (392)
Q Consensus       125 ~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~---~i~vw---d~~--~~~~----  188 (392)
                      +.|+.+.....|.+|++.+.. ........-+.|..+.++..|++|++--++   .   .+|+|   +..  ..++    
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR  108 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR  108 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence            455444667889999998332 222233334789999999999999986432   2   45655   211  1111    


Q ss_pred             -----------------eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc
Q 016257          189 -----------------WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (392)
Q Consensus       189 -----------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~  234 (392)
                                       +..++-+...++.+++..|-...     ++.++ ++.+.+|.+...
T Consensus       109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-----LlVg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen  109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-----LLVGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-----EEEEc-CCEEEEEEEEEE
Confidence                             11222223345667777776544     44444 457888877653

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=91.87  E-value=7.5  Score=33.36  Aligned_cols=145  Identities=11%  Similarity=-0.005  Sum_probs=82.1

Q ss_pred             cEEEEECCCCeeeEEEecC-----CCcceEEEEecCCCC-cceEEEEEEeCCccEEEEEeCCCceeeeeeccc-------
Q 016257          177 SARIWKTEDGVAWTFLTRN-----SDEKIELCRFSKDGT-KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-------  243 (392)
Q Consensus       177 ~i~vwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~-------  243 (392)
                      +|.+||+.+++.++++..+     ....+..+++..... ..-.++.++-...+-|.|+|+.+++..+.+..+       
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            6788898888887777543     234567777776332 100112355566678999999987654333221       


Q ss_pred             ------------CCCcEEEEECC---CCCEEEEEeCCCcEEEEecCCc-----eeee------ee-eccccCcceEEEEE
Q 016257          244 ------------RKPASVLSISL---DGKYLAMGSKDGDICVVDVKKM-----EINH------WS-KRLHLGTSIALVEF  296 (392)
Q Consensus       244 ------------~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd~~~~-----~~~~------~~-~~~~~~~~i~~~~~  296 (392)
                                  ...+..++.+|   +++.|+...-.+ -++|.+++.     ....      .+ ..+...+....+++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~  193 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI  193 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence                        12355666655   666777665443 334433321     1000      00 01111235667889


Q ss_pred             eeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257          297 CPTQRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       297 s~~~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                      +++|.++++--..+.|..|+...+-.
T Consensus       194 D~~G~ly~~~~~~~aI~~w~~~~~~~  219 (287)
T PF03022_consen  194 DPNGNLYFTDVEQNAIGCWDPDGPYT  219 (287)
T ss_dssp             ETTTEEEEEECCCTEEEEEETTTSB-
T ss_pred             CCCCcEEEecCCCCeEEEEeCCCCcC
Confidence            99999888888999999999886433

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=91.73  E-value=17  Score=37.11  Aligned_cols=178  Identities=13%  Similarity=0.139  Sum_probs=94.1

Q ss_pred             CCCcEEEEeCCCCceeecccCCC-CcEEEEEe-----cC----CCCeEEEEc-----C----CCcEEEEECCC-----Ce
Q 016257          132 VDGHLRIMHWPSLRIILDEPKAH-KSVLDMDF-----SL----DSEFLATTS-----T----DGSARIWKTED-----GV  187 (392)
Q Consensus       132 ~dg~i~i~d~~~~~~~~~~~~~~-~~i~~i~~-----~~----~~~~l~~~~-----~----d~~i~vwd~~~-----~~  187 (392)
                      ....|.+.+.++++.+-.+.-.. ..+.++..     ..    ...+|++|.     +    -|.+.++|+-.     ++
T Consensus      1002 ~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgk 1081 (1366)
T KOG1896|consen 1002 EQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGK 1081 (1366)
T ss_pred             ccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCC
Confidence            34556666666555443322111 12333333     11    124677664     2    37899999742     22


Q ss_pred             e-----eE-EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeC-CCceeeeeecccCCCcEEEEECCCCCEEE
Q 016257          188 A-----WT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI-STWNKIGHKRLLRKPASVLSISLDGKYLA  260 (392)
Q Consensus       188 ~-----~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  260 (392)
                      +     ++ .+.....++|..++ .-+|.       +..+....|.+|++ +....+.. ...+-++.-.....-+++|+
T Consensus      1082 P~t~~KlKel~~eE~KGtVsavc-eV~G~-------l~~~~GqKI~v~~l~r~~~ligV-aFiD~~~yv~s~~~vknlIl 1152 (1366)
T KOG1896|consen 1082 PFTKNKLKELYIEEQKGTVSAVC-EVRGH-------LLSSQGQKIIVRKLDRDSELIGV-AFIDLPLYVHSMKVVKNLIL 1152 (1366)
T ss_pred             CcccceeeeeehhhcccceEEEE-EeccE-------EEEccCcEEEEEEeccCCcceee-EEeccceeEEehhhhhhhee
Confidence            1     12 22233344555543 33444       33344557999998 43333211 11222333333333456777


Q ss_pred             EEeCCCcEEEEecCCc-eeeeeeeccccCcceEEEEEeeCCC--eEEEEeCCCeEEEEEee
Q 016257          261 MGSKDGDICVVDVKKM-EINHWSKRLHLGTSIALVEFCPTQR--VVLTASKEWGAMITKLT  318 (392)
Q Consensus       261 ~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~iw~~~  318 (392)
                      .|..-..|.+.-.+.. ..+..+.+....-.++++.|--||.  .++++..|+.|+++...
T Consensus      1153 ~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1153 AGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred             hhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence            7766566766655442 2233332333255788889988887  67888899999998776

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=91.73  E-value=7  Score=32.70  Aligned_cols=238  Identities=11%  Similarity=0.021  Sum_probs=139.2

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  142 (392)
                      ......++-.|||..-+++...+.|--.|-.+++....-+       .....-..+..-|||..-++-+.. -|.-.|-+
T Consensus        61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypL-------g~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpk  132 (353)
T COG4257          61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPL-------GSGASPHGIVVGPDGSAWITDTGL-AIGRLDPK  132 (353)
T ss_pred             CCCccccccCCCCceEEecCccccceecCCCCCceEEEec-------CCCCCCceEEECCCCCeeEecCcc-eeEEecCc
Confidence            3467778888999888888777777777777776433222       223455778888888776664333 45555655


Q ss_pred             CCceee-cccC--CCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEE
Q 016257          143 SLRIIL-DEPK--AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (392)
Q Consensus       143 ~~~~~~-~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (392)
                      +.+... .+..  .........|.+.|++-+++.. |.---.|.. ...+..+........+.++..|+|..     -++
T Consensus       133 t~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsv-----wya  205 (353)
T COG4257         133 TLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSV-----WYA  205 (353)
T ss_pred             ccceEEeecccccCCCcccceeeCCCccEEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcE-----EEE
Confidence            554321 1222  2236788899999998888753 211111211 12334444444455788999999984     344


Q ss_pred             eCCccEEEEEeCCCceee--eeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEe
Q 016257          220 RGDKALLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (392)
Q Consensus       220 ~~~d~~i~v~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  297 (392)
                      .-.++.|...|..++...  ..-.......+.+--+|.|+.-++....+.++-||.....-......+. +..-.++...
T Consensus       206 slagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs-~arpys~rVD  284 (353)
T COG4257         206 SLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGS-KARPYSMRVD  284 (353)
T ss_pred             eccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCC-CCCcceeeec
Confidence            445666777776655221  1111212344556667888888887778889999877655333322233 4445566665


Q ss_pred             eCCCeEEEEeCCCeEEEEE
Q 016257          298 PTQRVVLTASKEWGAMITK  316 (392)
Q Consensus       298 ~~~~~l~~~~~dg~i~iw~  316 (392)
                      ..++..++--.-|.|.-+|
T Consensus       285 ~~grVW~sea~agai~rfd  303 (353)
T COG4257         285 RHGRVWLSEADAGAIGRFD  303 (353)
T ss_pred             cCCcEEeeccccCceeecC
Confidence            5555444333334444443

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=91.36  E-value=10  Score=33.95  Aligned_cols=194  Identities=12%  Similarity=0.052  Sum_probs=100.6

Q ss_pred             eEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCC-C
Q 016257           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-K  155 (392)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~  155 (392)
                      .+.++..+|.+.-.|..++..........     ....+..-.+..+|+ ++.++.++.++.+|.++++.+....... .
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-----~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~  143 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLG-----AVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSP  143 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcC-----cceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCe
Confidence            44555778877777777766433221110     001122222222664 7788889999999998888876655443 1


Q ss_pred             cEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCC--CcceEEEEecCCCCcceEEEEEEeCC--ccEEEEEeC
Q 016257          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS--DEKIELCRFSKDGTKPFLFCTVQRGD--KALLAVYDI  231 (392)
Q Consensus       156 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~--d~~i~v~d~  231 (392)
                      .+..-..-.++ .+...+.++.+...+..+++..-......  ...+..-....++.      +..+..  ++.+.-.|.
T Consensus       144 ~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~------vy~~~~~~~~~~~a~~~  216 (370)
T COG1520         144 YYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT------VYVGSDGYDGILYALNA  216 (370)
T ss_pred             EEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce------EEEecCCCcceEEEEEc
Confidence            11111122233 34444467888888888887766544321  11111111122222      344444  557777788


Q ss_pred             CCceeeeeeccc----CCCc-EEEEECC----CCCEEEEEeCCCcEEEEecCCceeeeeee
Q 016257          232 STWNKIGHKRLL----RKPA-SVLSISL----DGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (392)
Q Consensus       232 ~~~~~~~~~~~~----~~~v-~~~~~s~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  283 (392)
                      +++...-..+..    ...+ ....+..    .+.-++.++.++.+...|..+++.+-...
T Consensus       217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~  277 (370)
T COG1520         217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFP  277 (370)
T ss_pred             cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEe
Confidence            777665442211    1111 0011110    11233566677888888888888766553

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=91.14  E-value=18  Score=36.33  Aligned_cols=173  Identities=16%  Similarity=0.177  Sum_probs=95.5

Q ss_pred             cEEEEeCCCCceeecccCCCC----cEEEEEecCCCC--eEEEEc-----------CCCcEEEEECC-CCeeeEEEecCC
Q 016257          135 HLRIMHWPSLRIILDEPKAHK----SVLDMDFSLDSE--FLATTS-----------TDGSARIWKTE-DGVAWTFLTRNS  196 (392)
Q Consensus       135 ~i~i~d~~~~~~~~~~~~~~~----~i~~i~~~~~~~--~l~~~~-----------~d~~i~vwd~~-~~~~~~~~~~~~  196 (392)
                      .|++.|..+++.+..+....+    .+..+.|+....  +++++.           .+|.++.|++- .++.+ .+..+.
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~l-ellh~T  932 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKL-ELLHKT  932 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCcee-eeeecc
Confidence            478888877766543332222    567777766433  333332           23446666653 33322 222222


Q ss_pred             CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc--cCCCcEEEEECCCCCEEEEEeCCCcEEEE--e
Q 016257          197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVV--D  272 (392)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iw--d  272 (392)
                      .-+-.-.+..|-..+      +.++....+++||+...+.++....  ....|+.+.+  .+..+++|...-.+.++  +
T Consensus       933 ~~~~~v~Ai~~f~~~------~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen  933 EIPGPVGAICPFQGR------VLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred             CCCccceEEeccCCE------EEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEe
Confidence            212233456676664      4455567899999987766543332  2445666665  45677887765555554  4


Q ss_pred             cCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          273 VKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      -...+........- ...|+++.+- |-..++.+..=|.+.+-++.
T Consensus      1005 ~~~n~l~~fadD~~-pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1005 REDNQLIVFADDPV-PRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             cCCCeEEEEeCCCc-cceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence            44455554443222 4567777665 44457777766777665554

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.12  E-value=6.9  Score=31.48  Aligned_cols=144  Identities=11%  Similarity=0.159  Sum_probs=78.2

Q ss_pred             CeEEEEcCCCcEEEEECCCC--eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCcc---EEEEE---eCC--Ccee
Q 016257          167 EFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA---LLAVY---DIS--TWNK  236 (392)
Q Consensus       167 ~~l~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~---~i~v~---d~~--~~~~  236 (392)
                      +.|+.+.....|.+|++...  +...++.  .-+.|..+.++..|.++  ..+-.-....   .+++|   +..  ..++
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYl--vTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~  104 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYL--VTLEEKNKRSPVDFVRAYFNWRSQKEENSP  104 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceE--EEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence            44444455678999999843  3344444  34579999999999962  1122222223   56665   211  1111


Q ss_pred             ee-eec---------------------ccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCcee-e---eee------ec
Q 016257          237 IG-HKR---------------------LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI-N---HWS------KR  284 (392)
Q Consensus       237 ~~-~~~---------------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~---~~~------~~  284 (392)
                      +. .+-                     ....+..+++..|-..-|++|+ ++++.+|.++.... .   ..+      ..
T Consensus       105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~  183 (215)
T PF14761_consen  105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLID  183 (215)
T ss_pred             EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhh
Confidence            11 000                     1134667888888655555565 45799998765433 1   111      01


Q ss_pred             cccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          285 LHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       285 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      .|..-.+..+++.  +.++|..+.. .+++.++.
T Consensus       184 ~~~~~~p~~v~ic--~~yiA~~s~~-ev~Vlkl~  214 (215)
T PF14761_consen  184 HIDNFKPTQVAIC--EGYIAVMSDL-EVLVLKLE  214 (215)
T ss_pred             eecCceEEEEEEE--eeEEEEecCC-EEEEEEEe
Confidence            1213345666664  4577777655 77777653

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=90.83  E-value=1  Score=40.15  Aligned_cols=164  Identities=12%  Similarity=0.114  Sum_probs=95.7

Q ss_pred             CCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeee-EEEecC-CC---cceE-EEEecCCCCcceEEEEEEeCCccEE
Q 016257          153 AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW-TFLTRN-SD---EKIE-LCRFSKDGTKPFLFCTVQRGDKALL  226 (392)
Q Consensus       153 ~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~-~~---~~v~-~~~~~~~~~~~~~~~~~~~~~d~~i  226 (392)
                      ....+..+-..|||+.++.-+. .++.++++.+.... +++... .+   ..|+ ++..-..+.     .+...+.||.|
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~-----SLLv~~~dG~v  292 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGF-----SLLVVHEDGLV  292 (733)
T ss_pred             CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCce-----eEEEEcCCCce
Confidence            3346778889999999887765 67888888654321 122111 11   1111 111112222     26778888888


Q ss_pred             EEE-eCCCcee-----eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCC
Q 016257          227 AVY-DISTWNK-----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (392)
Q Consensus       227 ~v~-d~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  300 (392)
                      .-| |.+....     ++.++....++..+.-..+.+-+++-..+|++..+.....+.+-.. ..  -..+.-+++||.+
T Consensus       293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~-~~--~~~~~~~~~Sp~~  369 (733)
T COG4590         293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE-RA--YQAPQLVAMSPNQ  369 (733)
T ss_pred             eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh-hh--hcCcceeeeCccc
Confidence            877 4443221     2222222334444433334566788888899888865544433222 22  3467788999999


Q ss_pred             CeEEEEeCCCeEEEEEeecCccccce
Q 016257          301 RVVLTASKEWGAMITKLTVPADWKEW  326 (392)
Q Consensus       301 ~~l~~~~~dg~i~iw~~~~~~~~~~~  326 (392)
                      .++++- ..|+++++.++.+..-..|
T Consensus       370 ~~Ll~e-~~gki~~~~l~Nr~Peisw  394 (733)
T COG4590         370 AYLLSE-DQGKIRLAQLENRNPEISW  394 (733)
T ss_pred             chheee-cCCceEEEEecCCCCCccH
Confidence            988765 4579999999877654333

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=90.78  E-value=12  Score=33.64  Aligned_cols=53  Identities=11%  Similarity=0.138  Sum_probs=25.9

Q ss_pred             CCCEEEEEeCC-----------CcEEEEeCCCCceeecccCCCCcEE-EEEec-CCCCeEEEEcCC
Q 016257          123 DGSRFAAGGVD-----------GHLRIMHWPSLRIILDEPKAHKSVL-DMDFS-LDSEFLATTSTD  175 (392)
Q Consensus       123 ~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~i~-~i~~~-~~~~~l~~~~~d  175 (392)
                      ++...+.|+.+           ..+..||..+.+............. ..+.. -+++..+.|+.+
T Consensus        84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131         84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            55566666643           2477888876554332111111111 11222 356777777754

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.03  E-value=1.8  Score=24.20  Aligned_cols=31  Identities=16%  Similarity=0.160  Sum_probs=23.9

Q ss_pred             CCCCEEEEEe-CCCcEEEEecCCceeeeeeec
Q 016257          254 LDGKYLAMGS-KDGDICVVDVKKMEINHWSKR  284 (392)
Q Consensus       254 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~  284 (392)
                      |++++|+++. .++.|.++|..+++....+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5777777665 578899999998888776644

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PLN02193 nitrile-specifier protein

Probab=90.01  E-value=16  Score=33.97  Aligned_cols=148  Identities=11%  Similarity=0.044  Sum_probs=69.4

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCceeecccC---CCC-cEEEEEecCCCCeEEEEcCCC-----cEEEEECCCCee
Q 016257          123 DGSRFAAGGVD-----GHLRIMHWPSLRIILDEPK---AHK-SVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVA  188 (392)
Q Consensus       123 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~---~~~-~i~~i~~~~~~~~l~~~~~d~-----~i~vwd~~~~~~  188 (392)
                      ++.+.+.|+.+     ..+..||+.+.+.......   ... .-.+++. -++++++.|+.++     .+..||+.+.+-
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W  306 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW  306 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence            45555666654     3588899887654322111   111 1112222 2456666666543     467788776543


Q ss_pred             eEEEec----CCCcceEEEEecCCCCcceEEEEEEeCCc----cEEEEEeCCCceeeeeec----ccCCCcEEEEECCCC
Q 016257          189 WTFLTR----NSDEKIELCRFSKDGTKPFLFCTVQRGDK----ALLAVYDISTWNKIGHKR----LLRKPASVLSISLDG  256 (392)
Q Consensus       189 ~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~d----~~i~v~d~~~~~~~~~~~----~~~~~v~~~~~s~~~  256 (392)
                      ...-..    ..... ..++. -+++.     .+.++.+    ..+.+||+.+.+-.....    .......++ ..-++
T Consensus       307 ~~~~~~~~~~~~R~~-~~~~~-~~gki-----yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~  378 (470)
T PLN02193        307 FHCSTPGDSFSIRGG-AGLEV-VQGKV-----WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGK  378 (470)
T ss_pred             EeCCCCCCCCCCCCC-cEEEE-ECCcE-----EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECC
Confidence            221100    00101 11222 23332     2333322    568999988754321111    001111122 22356


Q ss_pred             CEEEEEeCC--------------CcEEEEecCCceee
Q 016257          257 KYLAMGSKD--------------GDICVVDVKKMEIN  279 (392)
Q Consensus       257 ~~l~~~~~d--------------g~i~iwd~~~~~~~  279 (392)
                      ++++.|+.+              +.+.+||+.+.+-.
T Consensus       379 ~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~  415 (470)
T PLN02193        379 HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE  415 (470)
T ss_pred             EEEEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence            777777753              24788898877644

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=89.93  E-value=11  Score=31.91  Aligned_cols=195  Identities=11%  Similarity=-0.020  Sum_probs=115.2

Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCC--CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeee-
Q 016257          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH--KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW-  189 (392)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~-  189 (392)
                      +-+..+.++.  ++...+..+.-++|.|+.+.........-.  +--.++..  .|++...+..|.-+.+.|+.+.... 
T Consensus        87 ~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~  162 (370)
T COG5276          87 DLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ  162 (370)
T ss_pred             hhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence            4556777764  477777777789999998765543322211  23344444  4888888886666888898765432 


Q ss_pred             --EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeee--cccCCCcEEEEECCCCCEEEEEeCC
Q 016257          190 --TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK--RLLRKPASVLSISLDGKYLAMGSKD  265 (392)
Q Consensus       190 --~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d  265 (392)
                        ....... .....++.|-+  +     ...+..|+-+.+-|+........+  ......+.++..+++..+++...+ 
T Consensus       163 lagrya~~~-~d~~~v~ISGn--~-----AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e-  233 (370)
T COG5276         163 LAGRYALPG-GDTHDVAISGN--Y-----AYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE-  233 (370)
T ss_pred             eeeeeccCC-CCceeEEEecC--e-----EEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc-
Confidence              2222221 12345555543  3     355556777889998764332111  122336788888888777666543 


Q ss_pred             CcEEEEecCCceeeeeeeccccCcceEEE-EEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257          266 GDICVVDVKKMEINHWSKRLHLGTSIALV-EFCPTQRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       266 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                       -+.+-|..+.+.+..+..-. ...+.++ .+.-.+++......+..+.+-++..+..
T Consensus       234 -gvlivd~s~~ssp~~~gsye-t~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~s  289 (370)
T COG5276         234 -GVLIVDVSGPSSPTVFGSYE-TSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPS  289 (370)
T ss_pred             -ceEEEecCCCCCceEeeccc-cCCcccccceecccceeeeeccccCceeEeccCCCC
Confidence             47788887766444432222 2222222 2333566777777787888888876654

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=89.86  E-value=14  Score=32.81  Aligned_cols=53  Identities=13%  Similarity=0.156  Sum_probs=26.3

Q ss_pred             CCCEEEEEeCC-----------CcEEEEeCCCCceeecccCCCCcEEEE-Ee-cCCCCeEEEEcCC
Q 016257          123 DGSRFAAGGVD-----------GHLRIMHWPSLRIILDEPKAHKSVLDM-DF-SLDSEFLATTSTD  175 (392)
Q Consensus       123 ~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~i~~i-~~-~~~~~~l~~~~~d  175 (392)
                      +++..+.|+.+           ..+..||..+.+-.............. .. .-+++..+.|+.+
T Consensus        63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence            56666666643           247778887665432211111111111 11 2357777777654

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=89.69  E-value=12  Score=31.80  Aligned_cols=273  Identities=11%  Similarity=0.082  Sum_probs=139.9

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  142 (392)
                      .+-+..+.++.  ++...+..+.-++|.|+.+.......-.     +...+.-.++..  .|++..++.-|.-+.+.|+.
T Consensus        86 ~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~-----lnt~gyaygv~v--sGn~aYVadlddgfLivdvs  156 (370)
T COG5276          86 RDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGF-----LNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVS  156 (370)
T ss_pred             hhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceecc-----ccCCceEEEEEe--cCCEEEEeeccCcEEEEECC
Confidence            44566777754  4666666666699999988764322211     111133344444  58888888866667788886


Q ss_pred             CCceee---cccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec-CCCcceEEEEecCCCCcceEEEEE
Q 016257          143 SLRIIL---DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       143 ~~~~~~---~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~  218 (392)
                      +.+...   +.......-..++.|  |++-..+..|+-+.+.|+........+.. .....++++..+++..+      +
T Consensus       157 dpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y------~  228 (370)
T COG5276         157 DPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAY------L  228 (370)
T ss_pred             CCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeE------E
Confidence            554321   222222234566666  77777888899999999987644332221 12225777777777653      2


Q ss_pred             EeCCccEEEEEeCCCceeeeeecc--cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecccc-CcceEEEE
Q 016257          219 QRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL-GTSIALVE  295 (392)
Q Consensus       219 ~~~~d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~i~~~~  295 (392)
                      +-. +.-+.+-|....+....+..  ...++..-.+.-.+++......+.-+.+-|+.+..-......... ...-..+.
T Consensus       229 vvy-~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~  307 (370)
T COG5276         229 VVY-DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIR  307 (370)
T ss_pred             EEc-ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceE
Confidence            222 22355666665443322211  122221112333456666666666677777765433222111110 11223333


Q ss_pred             EeeCCCeEEEEeCCCeEEEEEeecCccc---cceeeeeeeeeeeeeceEEEEeeecceeeeecc
Q 016257          296 FCPTQRVVLTASKEWGAMITKLTVPADW---KEWQIYSLLLALFLASAVVFYIFFENSDSFWNF  356 (392)
Q Consensus       296 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~  356 (392)
                      .  .+.++..+..+ ...+-+...+.-.   ........-...........+..+++...+|+.
T Consensus       308 a--y~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~  368 (370)
T COG5276         308 A--YGNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY  368 (370)
T ss_pred             E--ecCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence            3  34455555555 3334444322211   111111111122223335566677888888875

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=89.32  E-value=15  Score=32.69  Aligned_cols=192  Identities=11%  Similarity=0.095  Sum_probs=104.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec----CCCCe--EEEEc-CC---CcEEEEECCCC-eeeEE
Q 016257          123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS----LDSEF--LATTS-TD---GSARIWKTEDG-VAWTF  191 (392)
Q Consensus       123 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~----~~~~~--l~~~~-~d---~~i~vwd~~~~-~~~~~  191 (392)
                      ...+++....++-+.+||++- +.+..+..  +.+..+..-    -.|+.  |+.++ ++   .+|++|.+... ..+..
T Consensus        67 ~kSlIigTdK~~GL~VYdL~G-k~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~  143 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLDG-KELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD  143 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETTS--EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred             ccceEEEEeCCCCEEEEcCCC-cEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence            455777777888899999864 44444432  233333321    13433  44443 32   46999987531 12333


Q ss_pred             EecC------CCcceEEEEec--CCCCcceEEEEEEeCCccEEEEEeCC---Cc----eeeeeecccCCCcEEEEECCCC
Q 016257          192 LTRN------SDEKIELCRFS--KDGTKPFLFCTVQRGDKALLAVYDIS---TW----NKIGHKRLLRKPASVLSISLDG  256 (392)
Q Consensus       192 ~~~~------~~~~v~~~~~~--~~~~~~~~~~~~~~~~d~~i~v~d~~---~~----~~~~~~~~~~~~v~~~~~s~~~  256 (392)
                      +...      ....++.+++-  +.....+   ++....+|.+..|.+.   .+    +.++.+.. ...+..+......
T Consensus       144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~y---a~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~  219 (381)
T PF02333_consen  144 VTDPAAPIATDLSEPYGLCLYRSPSTGALY---AFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDET  219 (381)
T ss_dssp             -CBTTC-EE-SSSSEEEEEEEE-TTT--EE---EEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTT
T ss_pred             cCCCCcccccccccceeeEEeecCCCCcEE---EEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEeccc
Confidence            2211      11235666664  3322222   4666677888877664   22    34555544 4578888888888


Q ss_pred             CEEEEEeCCCcEEEEecCCc-----eeeeeeeccccCcceEEEEEee--CCC-e-EEEEeCCCeEEEEEeecCc
Q 016257          257 KYLAMGSKDGDICVVDVKKM-----EINHWSKRLHLGTSIALVEFCP--TQR-V-VLTASKEWGAMITKLTVPA  321 (392)
Q Consensus       257 ~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~i~~~~~s~--~~~-~-l~~~~~dg~i~iw~~~~~~  321 (392)
                      ..|+.+-++--|.-|+.+..     +.+......+....|..+++-.  +++ | |++.-.+++..+|+...+.
T Consensus       220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~  293 (381)
T PF02333_consen  220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN  293 (381)
T ss_dssp             TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred             CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence            89999998877888877521     2222222223367888888854  333 4 4455567899999987653

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.32  E-value=1.9  Score=23.77  Aligned_cols=30  Identities=23%  Similarity=0.265  Sum_probs=19.6

Q ss_pred             ccCCCcEEEEECCCCCEEEEEeC-C--CcEEEE
Q 016257          242 LLRKPASVLSISLDGKYLAMGSK-D--GDICVV  271 (392)
Q Consensus       242 ~~~~~v~~~~~s~~~~~l~~~~~-d--g~i~iw  271 (392)
                      ..........|||||+.|+..+. +  |.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            33456678999999998877664 3  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=89.21  E-value=4  Score=27.71  Aligned_cols=42  Identities=21%  Similarity=0.163  Sum_probs=29.7

Q ss_pred             eCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEe
Q 016257          263 SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS  307 (392)
Q Consensus       263 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  307 (392)
                      ..+|.+.-||..+++........   ...+.+++++|+.+++.+-
T Consensus        34 ~~~GRll~ydp~t~~~~vl~~~L---~fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   34 RPTGRLLRYDPSTKETTVLLDGL---YFPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             ---EEEEEEETTTTEEEEEEEEE---SSEEEEEE-TTSSEEEEEE
T ss_pred             CCCcCEEEEECCCCeEEEehhCC---CccCeEEEcCCCCEEEEEe
Confidence            34688999999999876655432   3778999999999776654

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.88  E-value=3.2  Score=39.55  Aligned_cols=72  Identities=24%  Similarity=0.279  Sum_probs=45.0

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCC----Cceeecc--------------c--------CCCCcEEEEEecC----CCCeEEE
Q 016257          122 VDGSRFAAGGVDGHLRIMHWPS----LRIILDE--------------P--------KAHKSVLDMDFSL----DSEFLAT  171 (392)
Q Consensus       122 ~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~--------------~--------~~~~~i~~i~~~~----~~~~l~~  171 (392)
                      ++...++.+..||.+.......    +......              .        ........+++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3666788888899888777653    1111100              0        0112355666666    6788999


Q ss_pred             EcCCCcEEEEECCCCeeeEEEe
Q 016257          172 TSTDGSARIWKTEDGVAWTFLT  193 (392)
Q Consensus       172 ~~~d~~i~vwd~~~~~~~~~~~  193 (392)
                      .+.|+++|+||+.+++++.+..
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999976653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.84  E-value=3  Score=39.64  Aligned_cols=77  Identities=18%  Similarity=0.163  Sum_probs=44.4

Q ss_pred             CCCCeEEEEeCCCeEEEEEEeC---Ccccee-e----------ccccCC-----CCCCCCCeEEEEecC----CCCEEEE
Q 016257           73 PSGDDFVCSTTNGGCKLFEVYG---GATDIN-L----------LAKKMP-----PLQDAGPQKCLSFSV----DGSRFAA  129 (392)
Q Consensus        73 p~~~~l~~~~~d~~i~iw~~~~---~~~~~~-~----------~~~~~~-----~~~~~~~v~~~~~s~----~~~~l~~  129 (392)
                      ++...++.+..||.+.......   ...... .          ...-..     ..........++.+.    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3666888888999888888765   111100 0          000000     001123455666666    6779999


Q ss_pred             EeCCCcEEEEeCCCCceeec
Q 016257          130 GGVDGHLRIMHWPSLRIILD  149 (392)
Q Consensus       130 ~~~dg~i~i~d~~~~~~~~~  149 (392)
                      .+.|+++|+||+.+++++..
T Consensus       236 l~~D~~LRiW~l~t~~~~~~  255 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLAT  255 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEE
Confidence            99999999999999988543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PLN02153 epithiospecifier protein

Probab=88.67  E-value=17  Score=32.21  Aligned_cols=66  Identities=9%  Similarity=0.026  Sum_probs=33.7

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCceeecccC-----CCCcEEEEEecCCCCeEEEEcCC-----------CcEEEE
Q 016257          123 DGSRFAAGGVD-----GHLRIMHWPSLRIILDEPK-----AHKSVLDMDFSLDSEFLATTSTD-----------GSARIW  181 (392)
Q Consensus       123 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~d-----------~~i~vw  181 (392)
                      +++.++.|+.+     ..+.+||.++.+-......     ........+..-+++.++.|+.+           ..+.+|
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y  164 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY  164 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence            45566666643     3578889877554321110     11111111222345666666643           247788


Q ss_pred             ECCCCee
Q 016257          182 KTEDGVA  188 (392)
Q Consensus       182 d~~~~~~  188 (392)
                      |.++.+-
T Consensus       165 d~~~~~W  171 (341)
T PLN02153        165 NIADGKW  171 (341)
T ss_pred             ECCCCeE
Confidence            8876543

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.60  E-value=22  Score=36.57  Aligned_cols=33  Identities=21%  Similarity=0.381  Sum_probs=27.5

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCC
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG   95 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~   95 (392)
                      ......++|+|....+|.+...|.|+++-...-
T Consensus        35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~v   67 (993)
T KOG1983|consen   35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGV   67 (993)
T ss_pred             CCCCcceeeccccceEEEEEecccEEEecccce
Confidence            346778999999999999999999999876543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.69  E-value=7  Score=30.57  Aligned_cols=35  Identities=14%  Similarity=0.150  Sum_probs=25.3

Q ss_pred             ceEEEEecCCCCcce-EEEEEEeCCccEEEEEeCCC
Q 016257          199 KIELCRFSKDGTKPF-LFCTVQRGDKALLAVYDIST  233 (392)
Q Consensus       199 ~v~~~~~~~~~~~~~-~~~~~~~~~d~~i~v~d~~~  233 (392)
                      .+..++|||.|-... -.++++-..++.|.+|....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            689999999764322 23367778889999997653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.55  E-value=10  Score=38.89  Aligned_cols=139  Identities=12%  Similarity=0.105  Sum_probs=82.3

Q ss_pred             eCCCcEEEEeCCCCceeecccCCCCcEEEEEe--------cCCCCeEEEEcCCCcEEEEECCCCee-------eEEEecC
Q 016257          131 GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF--------SLDSEFLATTSTDGSARIWKTEDGVA-------WTFLTRN  195 (392)
Q Consensus       131 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~--------~~~~~~l~~~~~d~~i~vwd~~~~~~-------~~~~~~~  195 (392)
                      +-|+.+.+|+.+++.....+.+....|..+..        -|.=++++....--.|.++-+.-.+.       ...+...
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            35889999999986665555444444554432        22223333333345566665432111       0111111


Q ss_pred             -CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC--Cc---e-e----------------eeeec-ccCCCcEEEE
Q 016257          196 -SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TW---N-K----------------IGHKR-LLRKPASVLS  251 (392)
Q Consensus       196 -~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~--~~---~-~----------------~~~~~-~~~~~v~~~~  251 (392)
                       .+..|.++....+|+      ++.++.||.|+-.-..  .+   + +                +..+. .+..+|..++
T Consensus       176 ~dg~~V~~I~~t~nGR------IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~  249 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGR------IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT  249 (1311)
T ss_pred             cCCceEEEEEeccCCc------EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence             234688899888888      5777777744322111  10   0 0                11122 3466899999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEecCC
Q 016257          252 ISLDGKYLAMGSKDGDICVVDVKK  275 (392)
Q Consensus       252 ~s~~~~~l~~~~~dg~i~iwd~~~  275 (392)
                      +......+++-++.|+|.+||+..
T Consensus       250 ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  250 IDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eccccceeeeeccCceEEEEEccC
Confidence            998889999999999999999976

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.18  E-value=3.6  Score=22.88  Aligned_cols=32  Identities=13%  Similarity=0.073  Sum_probs=24.1

Q ss_pred             CCCCeEEEEc-CCCcEEEEECCCCeeeEEEecC
Q 016257          164 LDSEFLATTS-TDGSARIWKTEDGVAWTFLTRN  195 (392)
Q Consensus       164 ~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~  195 (392)
                      |++++|+++. .+++|.++|..+++.+..+...
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence            5677666654 5789999999888887777653

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=86.79  E-value=2.4  Score=41.34  Aligned_cols=149  Identities=17%  Similarity=0.177  Sum_probs=78.7

Q ss_pred             eeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC---CCCeEEEEeCCCeEEEEEEeCCccceeeccccC-CCCC--
Q 016257           37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP---SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKM-PPLQ--  110 (392)
Q Consensus        37 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp---~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~~~--  110 (392)
                      +.+|.++.-.+++.. .+.......-...+.-+.|.|   +.-++..+..++++++.+......  .+...+. ....  
T Consensus       155 lfVy~vd~l~G~iq~-~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  155 LFVYDVDVLQGEIQP-QLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMA  231 (1283)
T ss_pred             hheeehHhhcccccc-ceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHH
Confidence            457887765444432 122222222334455666665   566778888888888877665432  1111000 0000  


Q ss_pred             --CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC-CC----ceeecccCCCC--cEEEEEecCCC---------CeEEEE
Q 016257          111 --DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP-SL----RIILDEPKAHK--SVLDMDFSLDS---------EFLATT  172 (392)
Q Consensus       111 --~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~----~~~~~~~~~~~--~i~~i~~~~~~---------~~l~~~  172 (392)
                        ..+.+.--..||||+.++.+..||.++.|.+. ++    ++......|.+  .+..+ ++...         .+++++
T Consensus       232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itt  310 (1283)
T KOG1916|consen  232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITT  310 (1283)
T ss_pred             HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEec
Confidence              01122223379999999999999999888763 22    23333344442  23333 43321         123333


Q ss_pred             c-CCCcEEEEECCCCeee
Q 016257          173 S-TDGSARIWKTEDGVAW  189 (392)
Q Consensus       173 ~-~d~~i~vwd~~~~~~~  189 (392)
                      + .+..+++|....-+|+
T Consensus       311 td~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  311 TDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             ccCCcceeEeeccchhhh
Confidence            3 4566888887655554

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=86.77  E-value=19  Score=30.89  Aligned_cols=61  Identities=8%  Similarity=-0.081  Sum_probs=38.7

Q ss_pred             CcEEEEECCCCCEEEEEeCCCcEEEEecCCce---eeeeeecccc-CcceEEEEEee--CCCeEEEE
Q 016257          246 PASVLSISLDGKYLAMGSKDGDICVVDVKKME---INHWSKRLHL-GTSIALVEFCP--TQRVVLTA  306 (392)
Q Consensus       246 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~-~~~i~~~~~s~--~~~~l~~~  306 (392)
                      ....++++++|.++++--..+.|..|+..+.-   ....+..... -..+.++++.+  +|.+.+..
T Consensus       187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            55678889999888888889999999988621   1112212221 24678888888  66654444

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=86.54  E-value=37  Score=33.89  Aligned_cols=69  Identities=16%  Similarity=0.070  Sum_probs=50.5

Q ss_pred             CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee----ecc----------c---cCcceEEEEEeeCCCeEEEEe
Q 016257          245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS----KRL----------H---LGTSIALVEFCPTQRVVLTAS  307 (392)
Q Consensus       245 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~----------~---~~~~i~~~~~s~~~~~l~~~~  307 (392)
                      ..|.+++...-+.+++..-.||+|.++|..+.+.+...    ...          .   ....+..++|||++-.++.-.
T Consensus       260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~  339 (753)
T PF11635_consen  260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID  339 (753)
T ss_pred             CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence            45667777777889999999999999998887544333    100          0   011344588999999999999


Q ss_pred             CCCeEE
Q 016257          308 KEWGAM  313 (392)
Q Consensus       308 ~dg~i~  313 (392)
                      .+|.+.
T Consensus       340 ~~~~~~  345 (753)
T PF11635_consen  340 EDGKTK  345 (753)
T ss_pred             cCCCce
Confidence            999877

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=86.43  E-value=36  Score=33.60  Aligned_cols=74  Identities=15%  Similarity=0.197  Sum_probs=51.2

Q ss_pred             CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC----------Cce---eecc--------cCCCCcEEEEEecCC---CC
Q 016257          112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS----------LRI---ILDE--------PKAHKSVLDMDFSLD---SE  167 (392)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~----------~~~---~~~~--------~~~~~~i~~i~~~~~---~~  167 (392)
                      .-.|..+.++|+|++++..+..| |.|..+..          ++.   ....        ......|..+.|+|.   +.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            34788999999999999888766 44444421          111   1111        122237899999995   47


Q ss_pred             eEEEEcCCCcEEEEECCCC
Q 016257          168 FLATTSTDGSARIWKTEDG  186 (392)
Q Consensus       168 ~l~~~~~d~~i~vwd~~~~  186 (392)
                      .|+.-..|+++++||+...
T Consensus       163 ~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             eEEEEecCCEEEEEecCCC
Confidence            8888889999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=86.35  E-value=3.9  Score=22.44  Aligned_cols=29  Identities=28%  Similarity=0.473  Sum_probs=19.4

Q ss_pred             CCCCeeEEEEcCCCCeEEEEe-CC--CeEEEE
Q 016257           62 SEGDPMTIAVNPSGDDFVCST-TN--GGCKLF   90 (392)
Q Consensus        62 h~~~v~~~~~sp~~~~l~~~~-~d--~~i~iw   90 (392)
                      ..+.-....|+|||+.|+.++ .+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            355677899999999888655 34  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=86.17  E-value=29  Score=33.62  Aligned_cols=192  Identities=15%  Similarity=0.173  Sum_probs=0.0

Q ss_pred             CCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeee
Q 016257          110 QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW  189 (392)
Q Consensus       110 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~  189 (392)
                      +....+.++.-+|.++.++.++.||+|++|++-..+.. .+-....+-..+.|...|  |+++..|+.+.-|. ++|...
T Consensus        12 k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qs-ki~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgvvq   87 (1636)
T KOG3616|consen   12 KEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQS-KICEEAKPKENLVFTNHG--LVTATSDRRALAWK-EDGVVQ   87 (1636)
T ss_pred             cccceeeeeeecCCCceEEEEecCCcEEEEeecccchh-hhhhhcCCccceeeeccc--eEEEeccchhheee-ccCcch


Q ss_pred             EEE--ecCCCcceEEEEecCCCCcceEEEE-------------------------EEeCCccEEEEEeCCCceeeeeecc
Q 016257          190 TFL--TRNSDEKIELCRFSKDGTKPFLFCT-------------------------VQRGDKALLAVYDISTWNKIGHKRL  242 (392)
Q Consensus       190 ~~~--~~~~~~~v~~~~~~~~~~~~~~~~~-------------------------~~~~~d~~i~v~d~~~~~~~~~~~~  242 (392)
                      +.+  .........++...|..+.     +                         .+--.-..+.+-|+.++........
T Consensus        88 qqfdyndqsekefss~~cdptaqn-----vvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s~  162 (1636)
T KOG3616|consen   88 QQFDYNDQSEKEFSSILCDPTAQN-----VVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLISH  162 (1636)
T ss_pred             hhccccchhhhhccceecCchhhh-----hhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEeeeec


Q ss_pred             cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCc--------ceEEEEEeeCCCeEEEEeCCCeE
Q 016257          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT--------SIALVEFCPTQRVVLTASKEWGA  312 (392)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~i~~~~~s~~~~~l~~~~~dg~i  312 (392)
                      ..-.|..+.+--..+|++.-+... |.|=|+.+.......-++. ++        .-.|+.|+...-.++--+.|+++
T Consensus       163 ~g~aidelkilgkdryli~~ts~s-iii~d~es~rfsei~wqgs-gg~ekfffd~~n~cli~nageltlveyg~d~sl  238 (1636)
T KOG3616|consen  163 KGLAIDELKILGKDRYLIAHTSES-IIIADLESNRFSEIAWQGS-GGHEKFFFDFENCCLIFNAGELTLVEYGNDDSL  238 (1636)
T ss_pred             CCcchhhhhhccccceEEeecccc-EEEeecccchhhhhhcccC-CCcceeeeecCcEEEEEecCeeEEEEecCCCcc

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.95  E-value=16  Score=33.62  Aligned_cols=77  Identities=14%  Similarity=0.154  Sum_probs=51.3

Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEe---------CCCCceee---cc--------cCCCCcEEEEEecCCC---CeE
Q 016257          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMH---------WPSLRIIL---DE--------PKAHKSVLDMDFSLDS---EFL  169 (392)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d---------~~~~~~~~---~~--------~~~~~~i~~i~~~~~~---~~l  169 (392)
                      -.|..+..++.|..++-.+.+|.+.++=         +++++...   ++        ...+-.+...+|+|+.   ..|
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            4577888899999999888888665542         13343211   11        1112256788999965   567


Q ss_pred             EEEcCCCcEEEEECCCCeee
Q 016257          170 ATTSTDGSARIWKTEDGVAW  189 (392)
Q Consensus       170 ~~~~~d~~i~vwd~~~~~~~  189 (392)
                      ..-+.|..|++||+.....+
T Consensus       184 ~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEEecCcEEEEEecCCcchh
Confidence            77778999999998765443

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=85.18  E-value=24  Score=30.57  Aligned_cols=60  Identities=15%  Similarity=0.154  Sum_probs=38.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCC-ceeecccCCCCcEEEEEecCCCCeEEEEc-CCCcEEEEECC
Q 016257          123 DGSRFAAGGVDGHLRIMHWPSL-RIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTE  184 (392)
Q Consensus       123 ~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~  184 (392)
                      ++++|+.|+++| +.+.++... .... ...+...|+.+...+..+.|++-+ ....++++++.
T Consensus        12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~-kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~   73 (302)
T smart00036       12 DGKWLLVGTEEG-LYVLNISDQPGTLE-KLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS   73 (302)
T ss_pred             CCcEEEEEeCCc-eEEEEcccCCCCeE-EecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence            336899999888 555555432 2222 223445899999988777665544 44459999984

Unpublished observations.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.54  E-value=55  Score=34.08  Aligned_cols=149  Identities=11%  Similarity=0.060  Sum_probs=81.8

Q ss_pred             EEEecC-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEE--------ecCCCCcceEEEEEEeCCccEEEEE
Q 016257          159 DMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCR--------FSKDGTKPFLFCTVQRGDKALLAVY  229 (392)
Q Consensus       159 ~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~~~~~~~~~~~d~~i~v~  229 (392)
                      .+-+-| -++.-++  -|..+.+|+.+++.....+..-.. .|..+.        |-|.=+++    ++.+ .--.|.++
T Consensus        83 ~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~sh-tIl~V~LvkPkpgvFv~~Iqhl----Lvva-T~~ei~il  154 (1311)
T KOG1900|consen   83 DMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSH-TILKVGLVKPKPGVFVPEIQHL----LVVA-TPVEIVIL  154 (1311)
T ss_pred             eeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhh-hheeeeeecCCCCcchhhhhee----EEec-ccceEEEE
Confidence            333444 3444444  368899999998666555543222 233322        22332331    1111 12234444


Q ss_pred             eCCC----cee-----eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEec----CCc---e-ee-------------
Q 016257          230 DIST----WNK-----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV----KKM---E-IN-------------  279 (392)
Q Consensus       230 d~~~----~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~----~~~---~-~~-------------  279 (392)
                      -+..    +..     ...+...+..|+++....+|+.+++|- ||  .+|.+    ..+   + +.             
T Consensus       155 gV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lv  231 (1311)
T KOG1900|consen  155 GVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLV  231 (1311)
T ss_pred             EEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhh
Confidence            3221    111     012223356788999888888887765 44  34433    111   1 00             


Q ss_pred             ---eeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          280 ---HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       280 ---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                         ..+...+ ..+|..++.......+.+-+..|+|.+|++..
T Consensus       232 Ps~~~~~~~~-~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  232 PSLLSVPGSS-KDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hhhhcCCCCC-CCcceeeEeccccceeeeeccCceEEEEEccC
Confidence               0011133 67999999998888999999999999999976

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=84.16  E-value=33  Score=31.25  Aligned_cols=288  Identities=13%  Similarity=0.029  Sum_probs=0.0

Q ss_pred             cCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEe-cCCCCEEEEEeCCCcEEEEeC--CCCc---
Q 016257           72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF-SVDGSRFAAGGVDGHLRIMHW--PSLR---  145 (392)
Q Consensus        72 sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~i~d~--~~~~---  145 (392)
                      ..+...|++|+.+|.++||+....+....-..-+...-..--.+.+-.| +......++.-.-.++.+|.+  ..+.   
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~  113 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH  113 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc


Q ss_pred             ----eeecccCCCC--cEEEEEecC-----CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE
Q 016257          146 ----IILDEPKAHK--SVLDMDFSL-----DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (392)
Q Consensus       146 ----~~~~~~~~~~--~i~~i~~~~-----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (392)
                          .+.....|+-  ....++.-|     ...+|.+-+.||.+.+|+-+.-.....+..  ---...+.|.+....   
T Consensus       114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~--~llPgPl~Y~~~tDs---  188 (418)
T PF14727_consen  114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD--FLLPGPLCYCPRTDS---  188 (418)
T ss_pred             CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC--CCCCcCeEEeecCCE---


Q ss_pred             EEEEEeCCccEEEEEeC---------------------CCceeeeeecccCC----CcEEEEECCCCCEEEEEeCCCcEE
Q 016257          215 FCTVQRGDKALLAVYDI---------------------STWNKIGHKRLLRK----PASVLSISLDGKYLAMGSKDGDIC  269 (392)
Q Consensus       215 ~~~~~~~~d~~i~v~d~---------------------~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~dg~i~  269 (392)
                        +++++.+..+.-|..                     ...+........-+    .+..+.++.....+++-++..   
T Consensus       189 --fvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~---  263 (418)
T PF14727_consen  189 --FVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERS---  263 (418)
T ss_pred             --EEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecce---


Q ss_pred             EEecCCceeeeeeeccccCcceEEEEEee----CCC---eEEEEeCCCeEEEEEeecC---ccccceeeeeeeeeeeeec
Q 016257          270 VVDVKKMEINHWSKRLHLGTSIALVEFCP----TQR---VVLTASKEWGAMITKLTVP---ADWKEWQIYSLLLALFLAS  339 (392)
Q Consensus       270 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~----~~~---~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~  339 (392)
                      ++=++..-.++...+.. -.+.....+..    ++.   .++.++.++++.||.=...   .......+...........
T Consensus       264 Lf~l~~~G~l~~~krLd-~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~~~PVal~v~~~~~~~  342 (418)
T PF14727_consen  264 LFCLKDNGSLRFQKRLD-YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLPHVPVALSVANFNGLK  342 (418)
T ss_pred             EEEEcCCCeEEEEEecC-CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCCCCCEEEEecccCCCC


Q ss_pred             eEEEEeeecceeeeecccccccccCCCCccc
Q 016257          340 AVVFYIFFENSDSFWNFPVARNQHGGPKIES  370 (392)
Q Consensus       340 ~~~~~~~~d~~i~~W~~~~~~~~~~~p~~~~  370 (392)
                      +.+.+.+.+|.+.+==+.+...+...|+.+.
T Consensus       343 G~IV~Ls~~G~L~v~YLGTdPs~~~~p~~~~  373 (418)
T PF14727_consen  343 GLIVSLSDEGQLSVSYLGTDPSLFQVPPLES  373 (418)
T ss_pred             ceEEEEcCCCcEEEEEeCCCCccccCCCccc

>KOG2109 consensus WD40 repeat protein [General function prediction only]

Probab=84.16  E-value=8.1  Score=36.46  Aligned_cols=262  Identities=15%  Similarity=0.119  Sum_probs=0.0

Q ss_pred             CceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCC---
Q 016257           35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD---  111 (392)
Q Consensus        35 ~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~---  111 (392)
                      +.+.+-+++        .......|+.|..++..++|.+.+..+++++-.| ..|.+++..+.............-+   
T Consensus       295 ~~vivkdf~--------S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g-~nVnvfRimet~~t~~~~~qs~~~s~ra  365 (788)
T KOG2109|consen  295 NLVIVKDFD--------SFADIRQFKAHKSPISALCFDQSGSLLVIASITG-RNVNVFRIMETVCTVNVSDQSLVVSPRA  365 (788)
T ss_pred             ceEEeeccc--------chhhhhheeeecCcccccccccCceEEEEEeecc-ceeeeEEeccccccccccccccccchhc


Q ss_pred             --CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCe----EEEEcCCCcEEEEECCC
Q 016257          112 --AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEF----LATTSTDGSARIWKTED  185 (392)
Q Consensus       112 --~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~----l~~~~~d~~i~vwd~~~  185 (392)
                        ...+..++|+...+++..++.+|.=     .+......+......-...-....+..    +++.+....-..|-..+
T Consensus       366 ~t~aviqdicfs~~s~~r~~gsc~Ge~-----P~ls~t~~lp~~A~~Sl~~gl~s~g~~aa~gla~~sag~~a~s~~asS  440 (788)
T KOG2109|consen  366 NTAAVIQDICFSEVSTIRTAGSCEGEP-----PALSLTCQLPAYADTSLDLGLQSSGGLAAEGLATSSAGYTAHSYTASS  440 (788)
T ss_pred             chHHHHHHHhhhhhcceEeecccCCCC-----cccccccccchhhchhhhccccccCcccceeeeeccccccccccccce


Q ss_pred             CeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC
Q 016257          186 GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD  265 (392)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  265 (392)
                      -.............+..........       -....-..+.++.-...-.++..-.|......+.|+++++.+.++...
T Consensus       441 v~s~s~~pd~ks~gv~~gsv~k~~q-------~~~~~l~~llv~~psGd~vvqh~vahs~~gv~~Ef~~~~~l~lSad~~  513 (788)
T KOG2109|consen  441 VFSRSVKPDSKSVGVGSGSVTKANQ-------GVITVLNLLLVGEPSGDGVVQHYVAHSDPGVYIEFSPDQRLVLSADAN  513 (788)
T ss_pred             eeccccccchhhccceeeeccccCc-------cchhhhhheeeecCCCCceeEEEeeccCccceeeecccccceeccccc


Q ss_pred             CcE-EEE---------ecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEe
Q 016257          266 GDI-CVV---------DVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (392)
Q Consensus       266 g~i-~iw---------d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  317 (392)
                      +.. .++         .+..-..+....++.....+..++|+.|.++++....-++-.++..
T Consensus       514 e~ef~~f~V~Ph~~wsslaav~hly~l~rG~TsaKv~~~afs~dsrw~A~~t~~~TthVfk~  575 (788)
T KOG2109|consen  514 ENEFNIFLVMPHATWSSLAAVQHLYKLNRGSTSAKVVSTAFSEDSRWLAITTNHATTHVFKV  575 (788)
T ss_pred             ccccceEEeecccccHHHhhhhhhhhccCCCccceeeeeEeecchhhhhhhhcCCceeeeee

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=83.41  E-value=46  Score=32.37  Aligned_cols=181  Identities=22%  Similarity=0.191  Sum_probs=0.0

Q ss_pred             CeEEEEecCCCCEEEEEeCC---------CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCc----EEE
Q 016257          114 PQKCLSFSVDGSRFAAGGVD---------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGS----ARI  180 (392)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~----i~v  180 (392)
                      .+.....+|.+..++.....         ..+.+-|...    .........+..+.|+|++..++..+.++.    +++
T Consensus        14 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l   89 (620)
T COG1506          14 RVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT----VRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYL   89 (620)
T ss_pred             cccCcccCCCCceeEEeeccccccccccccceEEEeccc----ccccccCCcccccccCCCCCEEEEEeccCCCcceEEE


Q ss_pred             EECCCCeeeEEEecCCCcceEEEEecCCCCcceE---------------------EEEEEeC-CccEEEEEeCCCceeee
Q 016257          181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL---------------------FCTVQRG-DKALLAVYDISTWNKIG  238 (392)
Q Consensus       181 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---------------------~~~~~~~-~d~~i~v~d~~~~~~~~  238 (392)
                      .+.. +     ........+....|+|++.....                     ......+ ....+.+.|...  ...
T Consensus        90 ~~~~-g-----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~--~~~  161 (620)
T COG1506          90 VDVG-G-----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIES--KLI  161 (620)
T ss_pred             EecC-C-----ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCc--ccc


Q ss_pred             eecccCCCcEEEEECCCCCEEEEEeCCCc-------EEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC
Q 016257          239 HKRLLRKPASVLSISLDGKYLAMGSKDGD-------ICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE  309 (392)
Q Consensus       239 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  309 (392)
                      ........+....+++++..++....+..       ..++...++........   ...+..+.|.++|+.++..+..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~gk~~~~~~~~  236 (620)
T COG1506         162 KLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELESLTPG---EGSISKLAFDADGKSIALLGTE  236 (620)
T ss_pred             cccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceEEEcCC---CceeeeeeeCCCCCeeEEeccC

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	392
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-06
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-06
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-06
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		4e-06
2h9l_A	329	Wdr5delta23 Length = 329		4e-06
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		4e-06
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-06
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-06
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-06
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-06
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-06
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-06
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		5e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		6e-06
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		6e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		7e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		7e-06
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		8e-06
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		8e-06
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-05
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-05

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 232
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 233 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 288
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 289 ISTACHPTENIIASAALE 306

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 232
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 233 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 288
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 289 ISTACHPTENIIASAALE 306

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 136 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 195
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 196 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 250
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 251 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 306
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 307 ISTACHPTENIIASAALE 324

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 232
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 233 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 288
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 289 ISTACHPTENIIASAALE 306

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 129 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 188
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 189 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 243
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 244 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 299
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 300 ISTACHPTENIIASAALE 317

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 117 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 176
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 177 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 231
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 232 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 287
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 288 ISTACHPTENIIASAALE 305

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 134 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 248
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 249 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 304
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 305 ISTACHPTENIIASAALE 322

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 111 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 170
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 171 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 225
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 226 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 281
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 282 ISTACHPTENIIASAALE 299

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 226
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 227 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 282
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 283 ISTACHPTENIIASAALE 300

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 113 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 172
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 173 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 227
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 228 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 283
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 284 ISTACHPTENIIASAALE 301

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 108 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 167
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 168 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 222
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 223 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 278
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 279 ISTACHPTENIIASAALE 296

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 226
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 227 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 282
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 283 ISTACHPTENIIASAALE 300

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 286 ISTACHPTENIIASAALE 303

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 286 ISTACHPTENIIASAALE 303

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 286 ISTACHPTENIIASAALE 303

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 11/160 (6%)
Query: 120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR 179
            S DG    +G  DG LR+    +           K VL + FS D+  + + S D + +
Sbjct: 71  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----N 235
           +W T     +T    +  E +   RFS + + P +   V  G   L+ V++++      N
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII---VSCGWDKLVKVWNLANCKLKTN 187
Query: 236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275
            IGH   L    + +++S DG   A G KDG   + D+ +
Sbjct: 188 HIGHTGYL----NTVTVSPDGSLCASGGKDGQAMLWDLNE 223

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 11/160 (6%)
Query: 120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR 179
            S DG    +G  DG LR+    +           K VL + FS D+  + + S D + +
Sbjct: 94  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----N 235
           +W T     +T    +  E +   RFS + + P +   V  G   L+ V++++      N
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII---VSCGWDKLVKVWNLANCKLKTN 210
Query: 236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275
            IGH   L    + +++S DG   A G KDG   + D+ +
Sbjct: 211 HIGHTGYL----NTVTVSPDGSLCASGGKDGQAMLWDLNE 246

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    +   +   P     V  + F+ D   + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNMVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 286 ISTACHPTENIIASAALE 303

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 25/181 (13%)
Query: 34  PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY 93
           P+++++   +P+T+ VY    +     + EGD                    G    E  
Sbjct: 561 PNIVQLGLCEPETSEVYRQAKLQA---KQEGDT-------------------GRLYLEWI 598
Query: 94  GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153
              T  NL    + P  DA    C  FS DG R A+ G D  L++    +   +LD    
Sbjct: 599 NKKTIKNLSRLVVRPHTDAVYHAC--FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH 656
Query: 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213
              VL   FS D  ++AT S D   +IW +  G        +S E++  C F+       
Sbjct: 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS-EQVNCCHFTNKSNHLL 715
Query: 214 L 214
           L
Sbjct: 716 L 716

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 25/181 (13%)
Query: 34  PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY 93
           P+++++   +P+T+ VY    +     + EGD                    G    E  
Sbjct: 568 PNIVQLGLCEPETSEVYRQAKLQA---KQEGDT-------------------GRLYLEWI 605
Query: 94  GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153
              T  NL    + P  DA    C  FS DG R A+ G D  L++    +   +LD    
Sbjct: 606 NKKTIKNLSRLVVRPHTDAVYHAC--FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH 663
Query: 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213
              VL   FS D  ++AT S D   +IW +  G        +S E++  C F+       
Sbjct: 664 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS-EQVNCCHFTNKSNHLL 722
Query: 214 L 214
           L
Sbjct: 723 L 723

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    +   +   P     V  + F+ D   + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDND----LKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNMVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 286 ISTACHPTENIIASAALE 303

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	392
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.95
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.95
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.92
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.92
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.88
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.88
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.87
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.86
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.86
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.85
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.85
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.84
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.84
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.81
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.81
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.81
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.81
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.81
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.81
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.79
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.79
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.79
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.78
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.78
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.77
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.76
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.76
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.76
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.74
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.74
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.73
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.73
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.71
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.71
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.71
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.71
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.71
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.69
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.69
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.69
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.68
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.67
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.66
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.65
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.64
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.64
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.64
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.6
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.59
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.58
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.56
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.55
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.54
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.54
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.53
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.53
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.52
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.51
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.48
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.47
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.46
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.43
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.41
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.39
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.38
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.38
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.34
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.34
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.32
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.32
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.29
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.28
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.28
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.27
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.27
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.26
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.26
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.24
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.22
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.18
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.11
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.11
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.11
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.1
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.09
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.07
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.06
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.06
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.04
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.01
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.97
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.97
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.97
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.96
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.93
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.89
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.88
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.87
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.86
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.84
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.84
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.83
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.83
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.82
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.82
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.8
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.8
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.8
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.79
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.78
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.77
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.75
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.73
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.72
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.72
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.71
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.69
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.68
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.65
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.65
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.63
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.58
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.52
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.5
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.5
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.47
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.45
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.4
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.38
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.34
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.33
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.27
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.25
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.22
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.21
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.18
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.16
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.14
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.13
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.12
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.07
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.05
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.04
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.02
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.96
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.88
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.82
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.81
3ott_A	758	Two-component system sensor histidine kinase; beta	97.78
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.76
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.71
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.7
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.69
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.65
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.61
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.59
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.57
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.56
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.53
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.5
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.45
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.43
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.41
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.4
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.29
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.22
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.2
3ott_A	758	Two-component system sensor histidine kinase; beta	97.06
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.06
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.01
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.97
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.96
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.94
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.92
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.9
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.89
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.87
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.87
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.78
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.66
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	96.62
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.57
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.41
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.34
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.1
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.96
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.64
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.46
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.52
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	93.41
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.06
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	92.67
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	90.0
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	89.99
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	89.6
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	86.97
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.33
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	84.16
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.2
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	81.72
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	81.09

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-47  Score=334.67  Aligned_cols=288  Identities=17%  Similarity=0.191  Sum_probs=252.2

Q ss_pred             CceeeeecCCCCCc-ceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe
Q 016257            4 GGTVTCGSWIKRPE-NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (392)
Q Consensus         4 ~~~v~~~~w~~~~~-~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~   82 (392)
                      .++|++++|+|+.. .-.++++|+.      |+.+++|.++..      .......+.+|...|.+++|+|++.++++++
T Consensus        32 ~~~V~~v~~~~~~~~~~~~l~tgs~------D~~v~vW~~~~~------~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s   99 (321)
T 3ow8_A           32 DDAIWSVAWGTNKKENSETVVTGSL------DDLVKVWKWRDE------RLDLQWSLEGHQLGVVSVDISHTLPIAASSS   99 (321)
T ss_dssp             SSCEEEEEEC-------CEEEEEET------TSCEEEEEEETT------EEEEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred             CCcEEEEEEecCCCCCCCEEEEEcC------CCCEEEEECCCC------CeeeeeeeccCCCCEEEEEECCCCCEEEEEe
Confidence            46899999998632 1245666655      778999998732      1234456899999999999999999999999


Q ss_pred             CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (392)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~  162 (392)
                      .|++|++||+.+++....+..       +...+.+++|+|++++|++++.|+.|++|++++++....+..+...|.+++|
T Consensus       100 ~D~~i~lWd~~~~~~~~~~~~-------~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~  172 (321)
T 3ow8_A          100 LDAHIRLWDLENGKQIKSIDA-------GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAY  172 (321)
T ss_dssp             TTSEEEEEETTTTEEEEEEEC-------CTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEE
T ss_pred             CCCcEEEEECCCCCEEEEEeC-------CCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEE
Confidence            999999999988875544432       4567889999999999999999999999999999988877778789999999


Q ss_pred             cCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc
Q 016257          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (392)
Q Consensus       163 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~  242 (392)
                      +|++++|++++.|+.|++||+++++.+..+..+. ..|.+++|+|++..     +++++.|+.|++||+++++....+..
T Consensus       173 spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~spd~~~-----l~s~s~dg~i~iwd~~~~~~~~~~~~  246 (321)
T 3ow8_A          173 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA-MPIRSLTFSPDSQL-----LVTASDDGYIKIYDVQHANLAGTLSG  246 (321)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS-SCCCEEEECTTSCE-----EEEECTTSCEEEEETTTCCEEEEECC
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccC-CceeEEEEcCCCCE-----EEEEcCCCeEEEEECCCcceeEEEcC
Confidence            9999999999999999999999999988887654 47999999999997     89999999999999999999989999


Q ss_pred             cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      |...|.+++|+|++++|++++.|+.|++||+++++.+..+ ..| ...|.+++|+|++++|++++.||.|++|+..
T Consensus       247 h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~h-~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          247 HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF-FDH-QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCC-SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE-cCC-CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999999999999999999999999999988877 578 8999999999999999999999999999964

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-47  Score=346.04  Aligned_cols=288  Identities=13%  Similarity=0.109  Sum_probs=251.8

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .++|+|++|+|++   .++++|+.      |+.|++|+++        .......+.+|.+.|.+++|+|++++|++|+.
T Consensus       108 ~~~V~~~~~~p~~---~~l~s~s~------Dg~i~vwd~~--------~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~  170 (410)
T 1vyh_C          108 RSPVTRVIFHPVF---SVMVSASE------DATIKVWDYE--------TGDFERTLKGHTDSVQDISFDHSGKLLASCSA  170 (410)
T ss_dssp             SSCEEEEEECSSS---SEEEEEES------SSCEEEEETT--------TCCCCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCcEEEEEEcCCC---CEEEEEeC------CCeEEEEECC--------CCcEEEEEeccCCcEEEEEEcCCCCEEEEEeC
Confidence            4689999999987   45666555      6779999987        33445678999999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      |++|++||+.+.+....+.       .|...|.+++|+|++++|++|+.|++|++||++++..+..+..|...|.++.|+
T Consensus       171 D~~i~iwd~~~~~~~~~~~-------~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~  243 (410)
T 1vyh_C          171 DMTIKLWDFQGFECIRTMH-------GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN  243 (410)
T ss_dssp             TSCCCEEETTSSCEEECCC-------CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             CCeEEEEeCCCCceeEEEc-------CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEEC
Confidence            9999999998766443332       377899999999999999999999999999999999988888888899999999


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcce---------------EEEEEEeCCccEEEE
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF---------------LFCTVQRGDKALLAV  228 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------~~~~~~~~~d~~i~v  228 (392)
                      |++++|++++.|++|++||++++++...+..+. ..|.+++|+|++....               -..+++++.|+.|++
T Consensus       244 ~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~i  322 (410)
T 1vyh_C          244 QDGTLIASCSNDQTVRVWVVATKECKAELREHR-HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM  322 (410)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCceeeEecCCC-ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEE
Confidence            999999999999999999999999888887654 4799999999732100               001789999999999


Q ss_pred             EeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeC
Q 016257          229 YDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK  308 (392)
Q Consensus       229 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  308 (392)
                      ||+++++++..+..|...|++++|+|++++|++|+.|+.|++||+++++....+ .+| ...|++++|+|++.+|++|+.
T Consensus       323 wd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~-~~h-~~~v~~l~~~~~~~~l~sgs~  400 (410)
T 1vyh_C          323 WDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAH-EHFVTSLDFHKTAPYVVTGSV  400 (410)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-ECC-SSCEEEEEECSSSSCEEEEET
T ss_pred             EECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE-cCC-CCcEEEEEEcCCCCEEEEEeC
Confidence            999999999999999999999999999999999999999999999998887776 578 889999999999999999999


Q ss_pred             CCeEEEEEee
Q 016257          309 EWGAMITKLT  318 (392)
Q Consensus       309 dg~i~iw~~~  318 (392)
                      ||.|++|+++
T Consensus       401 D~~i~vW~~r  410 (410)
T 1vyh_C          401 DQTVKVWECR  410 (410)
T ss_dssp             TSEEEEEC--
T ss_pred             CCcEEEEeCC
Confidence            9999999863

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.6e-46  Score=355.60  Aligned_cols=331  Identities=17%  Similarity=0.260  Sum_probs=257.2

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ..+|++++|+|+++.  .+++|+.      |+.+++|+..        .......+.+|.+.|.+++|+|++++|++++.
T Consensus       147 ~~~v~~v~f~p~~~~--~l~s~s~------D~~v~lwd~~--------~~~~~~~l~~H~~~V~~v~fspdg~~las~s~  210 (611)
T 1nr0_A          147 ARAMNSVDFKPSRPF--RIISGSD------DNTVAIFEGP--------PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG  210 (611)
T ss_dssp             SSCEEEEEECSSSSC--EEEEEET------TSCEEEEETT--------TBEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCceEEEECCCCCe--EEEEEeC------CCeEEEEECC--------CCeEeeeeccccCceEEEEECCCCCEEEEEEC
Confidence            457999999998753  3554444      7779999854        33455678999999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeec--------------
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD--------------  149 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------------  149 (392)
                      |++|++||+.+++....+.........|.+.|.+++|+|++++|++++.|++|++||+++++....              
T Consensus       211 D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~  290 (611)
T 1nr0_A          211 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI  290 (611)
T ss_dssp             TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEE
T ss_pred             CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEE
Confidence            999999999887655444222222335889999999999999999999999999999987765322              


Q ss_pred             -----------------------------ccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec------
Q 016257          150 -----------------------------EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR------  194 (392)
Q Consensus       150 -----------------------------~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~------  194 (392)
                                                   +.+|...|.+++|+|++++|++++.|++|++||+++++....+..      
T Consensus       291 ~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v  370 (611)
T 1nr0_A          291 IWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMI  370 (611)
T ss_dssp             EECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCE
T ss_pred             EEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceE
Confidence                                         235667899999999999999999999999999987644322100      


Q ss_pred             ---------------------------------------------------------------------------CCCcc
Q 016257          195 ---------------------------------------------------------------------------NSDEK  199 (392)
Q Consensus       195 ---------------------------------------------------------------------------~~~~~  199 (392)
                                                                                                 .+...
T Consensus       371 ~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~  450 (611)
T 1nr0_A          371 TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYN  450 (611)
T ss_dssp             EEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSC
T ss_pred             EEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCC
Confidence                                                                                       01124


Q ss_pred             eEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee--eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCC-c
Q 016257          200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK-M  276 (392)
Q Consensus       200 v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~  276 (392)
                      +.+++|+|+++.     +++++.|+.|++||+..+..  ... ..|...|++++|+|+|++|++++.|++|++||+.+ +
T Consensus       451 v~~va~spdg~~-----lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~  524 (611)
T 1nr0_A          451 SSCVALSNDKQF-----VAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF  524 (611)
T ss_dssp             EEEEEECTTSCE-----EEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT
T ss_pred             ceEEEEeCCCCE-----EEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC
Confidence            678899999987     89999999999999987643  233 67889999999999999999999999999999988 6


Q ss_pred             eeeee-eeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccc--ce--e-eeeeeeeeeeeceEEEEeeecce
Q 016257          277 EINHW-SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWK--EW--Q-IYSLLLALFLASAVVFYIFFENS  350 (392)
Q Consensus       277 ~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~--~-~~~~~~~~~~~~~~~~~~~~d~~  350 (392)
                      +.... ....| ...|.+++|+|||++|++|+.|++|++|++..+....  ..  + ........+...+.+++++.|++
T Consensus       525 ~~~~~~~~~~H-~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~l~s~~~D~~  603 (611)
T 1nr0_A          525 ELAHTNSWTFH-TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSN  603 (611)
T ss_dssp             EESCCCCCCCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSC
T ss_pred             ceeeeeeeeec-ccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCEEEEecCCCC
Confidence            65544 22348 8999999999999999999999999999997654211  10  0 01111111223334888899999


Q ss_pred             eeeeccc
Q 016257          351 DSFWNFP  357 (392)
Q Consensus       351 i~~W~~~  357 (392)
                      |++|+++
T Consensus       604 i~lW~~~  610 (611)
T 1nr0_A          604 IKFWNVP  610 (611)
T ss_dssp             EEEEECC
T ss_pred             EEEEecc
Confidence            9999974

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.9e-46  Score=335.55  Aligned_cols=286  Identities=15%  Similarity=0.209  Sum_probs=249.2

Q ss_pred             EEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCc
Q 016257           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (392)
Q Consensus        56 ~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  135 (392)
                      ...+.+|.++|++++|+|++++|++|+.|++|++||+.+++....+.       .|...|.+++|+|++++|++|+.|++
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~-------~h~~~V~~v~~~~~~~~l~sgs~D~~  173 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-------GHTDSVQDISFDHSGKLLASCSADMT  173 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC-------CCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-------ccCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            45688999999999999999999999999999999998887554443       37789999999999999999999999


Q ss_pred             EEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (392)
Q Consensus       136 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (392)
                      |++||+.+++.+..+..|...|.+++|+|++++|++++.|++|++||+++++++..+..+. ..+.++.++|++..    
T Consensus       174 i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~-~~v~~~~~~~~g~~----  248 (410)
T 1vyh_C          174 IKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR-EWVRMVRPNQDGTL----  248 (410)
T ss_dssp             CCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEECTTSSE----
T ss_pred             EEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC-ccEEEEEECCCCCE----
Confidence            9999999999988888888899999999999999999999999999999999998887665 47999999999997    


Q ss_pred             EEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCC--------------------CCEEEEEeCCCcEEEEecCC
Q 016257          216 CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD--------------------GKYLAMGSKDGDICVVDVKK  275 (392)
Q Consensus       216 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~dg~i~iwd~~~  275 (392)
                       +++++.|+.|++||+++++....+..|...|.+++|+|+                    +.+|++|+.|+.|++||+++
T Consensus       249 -l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~  327 (410)
T 1vyh_C          249 -IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST  327 (410)
T ss_dssp             -EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred             -EEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence             799999999999999999998899999999999999996                    67999999999999999999


Q ss_pred             ceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceee---eeeeeeeeeeceEEEEeeecceee
Q 016257          276 MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI---YSLLLALFLASAVVFYIFFENSDS  352 (392)
Q Consensus       276 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~i~  352 (392)
                      ++.+..+ .+| ...|++++|+|++++|++|+.||.|++|++...........   .............+++++.|+.|+
T Consensus       328 ~~~~~~~-~~h-~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~  405 (410)
T 1vyh_C          328 GMCLMTL-VGH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK  405 (410)
T ss_dssp             TEEEEEE-ECC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             CceEEEE-ECC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence            9988776 578 88999999999999999999999999999976544332210   011111112334678888999999


Q ss_pred             eecc
Q 016257          353 FWNF  356 (392)
Q Consensus       353 ~W~~  356 (392)
                      +|++
T Consensus       406 vW~~  409 (410)
T 1vyh_C          406 VWEC  409 (410)
T ss_dssp             EEC-
T ss_pred             EEeC
Confidence            9986

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.6e-46  Score=323.08  Aligned_cols=286  Identities=17%  Similarity=0.191  Sum_probs=245.1

Q ss_pred             ceEEEeeCCCCCeeEEEEcCC----CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEE
Q 016257           54 LVTYVFDESEGDPMTIAVNPS----GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA  129 (392)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~sp~----~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  129 (392)
                      .....+++|.+.|++++|+|+    +++|++|+.|++|++|++...+.......     ..|...|.+++|++++.++++
T Consensus        23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l-----~gh~~~v~~~~~~~~~~~l~s   97 (321)
T 3ow8_A           23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL-----EGHQLGVVSVDISHTLPIAAS   97 (321)
T ss_dssp             EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECSSSSEEEE
T ss_pred             heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeee-----ccCCCCEEEEEECCCCCEEEE
Confidence            344556789999999999985    56899999999999999987653222111     147889999999999999999


Q ss_pred             EeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCC
Q 016257          130 GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (392)
Q Consensus       130 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (392)
                      ++.|++|++||+++++.+..+..+...+.+++|+|++++|++++.|+.|++||+++++....+..+. ..+.+++|+|++
T Consensus        98 ~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~-~~v~~~~~spdg  176 (321)
T 3ow8_A           98 SSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRG-KFILSIAYSPDG  176 (321)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSS-SCEEEEEECTTS
T ss_pred             EeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCC-ceEEEEEECCCC
Confidence            9999999999999999888887777889999999999999999999999999999998888877654 479999999999


Q ss_pred             CcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCc
Q 016257          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT  289 (392)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  289 (392)
                      +.     +++++.|+.|++||+++++.+..+..|..+|++++|+|++++|++++.|+.|++||+++++....+ .+| ..
T Consensus       177 ~~-----lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h-~~  249 (321)
T 3ow8_A          177 KY-----LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL-SGH-AS  249 (321)
T ss_dssp             SE-----EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE-CCC-SS
T ss_pred             CE-----EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE-cCC-CC
Confidence            97     799999999999999999999999999999999999999999999999999999999998887766 578 88


Q ss_pred             ceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccc--------eeeeeeeeeeeeeceEEEEeeecceeeeeccc
Q 016257          290 SIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKE--------WQIYSLLLALFLASAVVFYIFFENSDSFWNFP  357 (392)
Q Consensus       290 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~  357 (392)
                      .|.+++|+|++++|++++.|+.|++|++........        +.+.+.+     ....+++++.|+.|++||.+
T Consensus       250 ~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-----~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          250 WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-----NGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-----TSSEEEEEETTCCEEEEECC
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-----CCCEEEEEeCCCeEEEEeCC
Confidence            999999999999999999999999999976543322        2222222     34467888899999999964

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=8.5e-46  Score=325.19  Aligned_cols=294  Identities=11%  Similarity=0.088  Sum_probs=234.9

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEE-----EcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeE
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFS-----FDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF   78 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~-----~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l   78 (392)
                      ...|.+++|+||+.   +++.++       +..+++|+     ++...... ..... .....|...|.+++|+|++ .|
T Consensus        30 ~~~v~~~~fs~dG~---~l~~~s-------d~~~r~Wd~~~~~~~~~~~~~-~~~~~-~~~~~~~~~v~~~~~s~d~-~l   96 (344)
T 4gqb_B           30 ERQLEAARYRSDGA---LLLGAS-------SLSGRCWAGSLWLFKDPCAAP-NEGFC-SAGVQTEAGVADLTWVGER-GI   96 (344)
T ss_dssp             CSEEEEEEECTTSC---EEEEEE-------CCSSSCCCEEEEEESSGGGTT-CGGGC-SEEEEESSCEEEEEEETTT-EE
T ss_pred             cCCEEEEEECCCCC---EEEEEe-------CCceEEeeceeeeeccccccC-Cccee-eeeeccCCCEEEEEEeCCC-eE
Confidence            35699999999994   455333       23344443     33211111 01111 1223457789999999985 78


Q ss_pred             EEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEE
Q 016257           79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL  158 (392)
Q Consensus        79 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~  158 (392)
                      ++|+.||+|+|||+.+++........   ...|.+.|++++|+|++++|++|+.|++|++||+++++.+..+.+|...|.
T Consensus        97 ~~~s~dg~v~lWd~~~~~~~~~~~~~---~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~  173 (344)
T 4gqb_B           97 LVASDSGAVELWELDENETLIVSKFC---KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT  173 (344)
T ss_dssp             EEEETTSEEEEEEECTTSSCEEEEEE---EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             EEEECCCEEEEEeccCCCceeEeecc---ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence            89999999999999988754433211   124889999999999999999999999999999999999988989999999


Q ss_pred             EEEecCCCC-eEEEEcCCCcEEEEECCCCeeeEEEecC-CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee
Q 016257          159 DMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (392)
Q Consensus       159 ~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~  236 (392)
                      +++|+|++. +|++++.|++|++||+++++....+... +...+.+++|+|++..+    +++++.|+.|++||++++++
T Consensus       174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----l~sg~~dg~v~~wd~~~~~~  249 (344)
T 4gqb_B          174 CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV----FVFGDENGTVSLVDTKSTSC  249 (344)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTE----EEEEETTSEEEEEESCC--C
T ss_pred             EEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcc----eEEeccCCcEEEEECCCCcE
Confidence            999999885 6889999999999999999888877532 34468999999976652    67889999999999999999


Q ss_pred             eeeecccCCCcEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCC-eEEEEeCCCeEEE
Q 016257          237 IGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMI  314 (392)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i  314 (392)
                      +..+..|...|++++|+|++ ++|++|+.|++|+|||++++++...  .+| ...|++++|+|+++ +|++++.|++|++
T Consensus       250 ~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~--~~H-~~~V~~v~~sp~~~~llas~s~D~~v~~  326 (344)
T 4gqb_B          250 VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS--QAH-RDFVRDATWSPLNHSLLTTVGWDHQVVH  326 (344)
T ss_dssp             CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE--CCC-SSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred             EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE--cCC-CCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence            99999999999999999998 6899999999999999999987653  588 89999999999987 5678999999999


Q ss_pred             EEeecC
Q 016257          315 TKLTVP  320 (392)
Q Consensus       315 w~~~~~  320 (392)
                      |++...
T Consensus       327 w~v~~~  332 (344)
T 4gqb_B          327 HVVPTE  332 (344)
T ss_dssp             EECCC-
T ss_pred             EECCCC
Confidence            999753

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.7e-45  Score=323.96  Aligned_cols=284  Identities=16%  Similarity=0.188  Sum_probs=244.8

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .++|++++|+|++.   ++++|+.      |+.|++|+..        .......+..|...|.+++|+|++++|++|+.
T Consensus        55 ~~~v~~~~~s~d~~---~l~s~s~------Dg~v~iWd~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  117 (340)
T 1got_B           55 LAKIYAMHWGTDSR---LLLSASQ------DGKLIIWDSY--------TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL  117 (340)
T ss_dssp             SSCEEEEEECTTSS---EEEEEET------TTEEEEEETT--------TCCEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             CCceEEEEECCCCC---EEEEEeC------CCcEEEEECC--------CCCcceEeecCCccEEEEEECCCCCEEEEEeC
Confidence            46899999999984   4665554      7789999876        33445667889999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      |+.+++|++.+.+........   ...|.+.|.++.|++++ .+++++.|++|++||+++++....+..|...|.+++|+
T Consensus       118 d~~v~iw~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~  193 (340)
T 1got_B          118 DNICSIYNLKTREGNVRVSRE---LAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA  193 (340)
T ss_dssp             TCEEEEEETTTCSBSCEEEEE---EECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             CCeEEEEECccCCCcceeEEE---ecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEEC
Confidence            999999998765422221111   11377899999999887 58899999999999999999988888888899999999


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc-
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-  242 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-  242 (392)
                      |+++++++++.|++|++||+++++....+..+. ..|.+++|+|++..     +++++.|+.|++||+++++.+..+.. 
T Consensus       194 ~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~-~~v~~v~~~p~~~~-----l~s~s~d~~v~iwd~~~~~~~~~~~~~  267 (340)
T 1got_B          194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHE-SDINAICFFPNGNA-----FATGSDDATCRLFDLRADQELMTYSHD  267 (340)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCSEEEEECCCS-SCEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc-CCEEEEEEcCCCCE-----EEEEcCCCcEEEEECCCCcEEEEEccC
Confidence            999999999999999999999999988887664 47999999999987     79999999999999998877655543 


Q ss_pred             -cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEE
Q 016257          243 -LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (392)
Q Consensus       243 -~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  316 (392)
                       +...+++++|+|+|++|++|+.|+.|++||+.+++....+ .+| ...|.+++|+|+|++|++|+.|+.|++|+
T Consensus       268 ~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~-~~h-~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL-AGH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECC-SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe-ecC-CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence             2347999999999999999999999999999998887766 588 89999999999999999999999999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1e-45  Score=327.19  Aligned_cols=300  Identities=13%  Similarity=0.125  Sum_probs=235.6

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ...|++++|+||+   .++++|+....---++.+++|.....  ..  .........+|...|++++|+|+++ +++++.
T Consensus        42 ~~~V~~v~fSpDG---~~las~s~d~~~~wd~~v~~~~~~~~--~~--~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~  113 (357)
T 4g56_B           42 EVQIGAVRYRRDG---ALLLAASSLSSRTWGGSIWVFKDPEG--AP--NESLCTAGVQTEAGVTDVAWVSEKG-ILVASD  113 (357)
T ss_dssp             CSEEEEEEECSSS---CEEEEEECSSSSSCCEEEEEESSCC-------CGGGCSEEEECSSCEEEEEEETTTE-EEEEET
T ss_pred             cCCEEEEEECCCC---CEEEEEcCCCCccccCeEEEEECCCC--Cc--ceeEecccCCCCCCEEEEEEcCCCC-EEEEEC
Confidence            4579999999999   45666654321112455666544322  11  1122234557889999999999985 556788


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      ||+|+|||+.+++.......   ....|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|...|.+++|+
T Consensus       114 dg~v~lWd~~~~~~~~~~~~---~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s  190 (357)
T 4g56_B          114 SGAVELWEILEKESLLVNKF---AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAAC  190 (357)
T ss_dssp             TSCEEEC--------CCCCE---EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             CCEEEEeeccccceeEEEee---ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence            99999999988764322211   122478899999999999999999999999999999999988888888999999999


Q ss_pred             CCCC-eEEEEcCCCcEEEEECCCCeeeEEEec-CCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec
Q 016257          164 LDSE-FLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (392)
Q Consensus       164 ~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~  241 (392)
                      |++. ++++++.|++|++||++++++...+.. .+...+.+++|+|++..+    +++++.|+.|++||+++++.+..+.
T Consensus       191 ~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~----la~g~~d~~i~~wd~~~~~~~~~~~  266 (357)
T 4g56_B          191 PGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDT----FACGDETGNVSLVNIKNPDSAQTSA  266 (357)
T ss_dssp             TTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTE----EEEEESSSCEEEEESSCGGGCEEEC
T ss_pred             cCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccce----EEEeecccceeEEECCCCcEeEEEe
Confidence            9875 788999999999999999887766543 344579999999987652    6788999999999999999999999


Q ss_pred             ccCCCcEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEee-CCCeEEEEeCCCeEEEEEeec
Q 016257          242 LLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP-TQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       242 ~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      .|...|++++|+|++ ++|++|+.|++|+|||+++++....+  +| ...|++++|+| ++++|++++.||+|++|++..
T Consensus       267 ~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H-~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SH-RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CC-SSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CC-CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence            999999999999987 67999999999999999999887654  78 89999999998 789999999999999999975


Q ss_pred             Cc
Q 016257          320 PA  321 (392)
Q Consensus       320 ~~  321 (392)
                      ..
T Consensus       344 ~~  345 (357)
T 4g56_B          344 EG  345 (357)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.9e-45  Score=348.38  Aligned_cols=325  Identities=14%  Similarity=0.139  Sum_probs=258.6

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .+.+.+++|+|+++.   ++++.       ++.+.+|.++        .+.....+.+|.+.|++++|+|+|++||+|+.
T Consensus        18 ~g~~~~~~~spdg~~---l~~~~-------~~~v~l~~~~--------~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~   79 (611)
T 1nr0_A           18 RGTAVVLGNTPAGDK---IQYCN-------GTSVYTVPVG--------SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV   79 (611)
T ss_dssp             TTCCCCCEECTTSSE---EEEEE-------TTEEEEEETT--------CSSCCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cCceeEEeeCCCCCE---EEeCC-------CCEEEEecCC--------CcccCeEecCCCCceEEEEECCCCcEEEEEeC
Confidence            467889999999854   55332       3468888875        33344668899999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC----CcEEEEeCCCCceeecccCCCCcEEE
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRIMHWPSLRIILDEPKAHKSVLD  159 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~i~~  159 (392)
                      |++|+|||+.+++........     .|.+.|.+++|+|++++|++++.+    +.|++||  +++....+.+|...|.+
T Consensus        80 d~~v~lWd~~~~~~~~~~~~~-----~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~  152 (611)
T 1nr0_A           80 HGNVRIWDTTQTTHILKTTIP-----VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNS  152 (611)
T ss_dssp             TSEEEEEESSSTTCCEEEEEE-----CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEE
T ss_pred             CCCEEEeECCCCcceeeEeec-----ccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceE
Confidence            999999998755432221111     367899999999999999998865    3677776  55666677788889999


Q ss_pred             EEecCCCC-eEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeee
Q 016257          160 MDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG  238 (392)
Q Consensus       160 i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~  238 (392)
                      ++|+|++. .|++++.|++|++||.+.++....+..|. ..|.+++|+|+++.     +++++.|+.|++||+++++.+.
T Consensus       153 v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~-~~V~~v~fspdg~~-----las~s~D~~i~lwd~~~g~~~~  226 (611)
T 1nr0_A          153 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHT-KFVHSVRYNPDGSL-----FASTGGDGTIVLYNGVDGTKTG  226 (611)
T ss_dssp             EEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCS-SCEEEEEECTTSSE-----EEEEETTSCEEEEETTTCCEEE
T ss_pred             EEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecccc-CceEEEEECCCCCE-----EEEEECCCcEEEEECCCCcEee
Confidence            99999987 59999999999999999988888887654 48999999999997     8999999999999999988877


Q ss_pred             eec-------ccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee-----------------------------
Q 016257          239 HKR-------LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS-----------------------------  282 (392)
Q Consensus       239 ~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----------------------------  282 (392)
                      .+.       .|...|.+++|+|++++|++++.|++|++||+.+++....+                             
T Consensus       227 ~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i  306 (611)
T 1nr0_A          227 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI  306 (611)
T ss_dssp             ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred             eeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcE
Confidence            663       68899999999999999999999999999999987654322                             


Q ss_pred             -------------eccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccce---eeeeeeeeeeeeceEEEEee
Q 016257          283 -------------KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEW---QIYSLLLALFLASAVVFYIF  346 (392)
Q Consensus       283 -------------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  346 (392)
                                   ..+| ...|++++|+|+|++|++++.|+.|++|++..+......   +........+.....+++++
T Consensus       307 ~~~~~~~~~~~~~~~gh-~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s  385 (611)
T 1nr0_A          307 NFVNPELGSIDQVRYGH-NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS  385 (611)
T ss_dssp             EEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEE
T ss_pred             EEEeCCCCCcceEEcCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEE
Confidence                         1367 789999999999999999999999999999765332111   00000011111345677888


Q ss_pred             ecceeeeecccccc
Q 016257          347 FENSDSFWNFPVAR  360 (392)
Q Consensus       347 ~d~~i~~W~~~~~~  360 (392)
                      .|+.+++|++..+.
T Consensus       386 ~d~~v~~w~~~~~~  399 (611)
T 1nr0_A          386 WDDHLKVVPAGGSG  399 (611)
T ss_dssp             TTTEEEEECSSSSS
T ss_pred             cCCceEEeecCCcc
Confidence            99999999987654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=7.8e-45  Score=314.63  Aligned_cols=283  Identities=11%  Similarity=0.137  Sum_probs=244.1

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ..+|++++|+|+++   ++++|+.      ++.+++|+++        .......+.+|..+|.+++|+|++++|++|+.
T Consensus        13 ~~~V~~~~fsp~~~---~l~s~~~------dg~v~lWd~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~   75 (304)
T 2ynn_A           13 SDRVKGIDFHPTEP---WVLTTLY------SGRVELWNYE--------TQVEVRSIQVTETPVRAGKFIARKNWIIVGSD   75 (304)
T ss_dssp             CSCEEEEEECSSSS---EEEEEET------TSEEEEEETT--------TTEEEEEEECCSSCEEEEEEEGGGTEEEEEET
T ss_pred             CCceEEEEECCCCC---EEEEEcC------CCcEEEEECC--------CCceeEEeeccCCcEEEEEEeCCCCEEEEECC
Confidence            46899999999984   4555544      7789999886        44556678899999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCce-eecccCCCCcEEEEEe
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-ILDEPKAHKSVLDMDF  162 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~i~~  162 (392)
                      |++|++||+.+++....+.       .|...|.+++|+|++++|++|+.|++|++||++++.. ...+..|...|.+++|
T Consensus        76 d~~i~vwd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~  148 (304)
T 2ynn_A           76 DFRIRVFNYNTGEKVVDFE-------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF  148 (304)
T ss_dssp             TSEEEEEETTTCCEEEEEE-------CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEe-------CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEE
Confidence            9999999998887655443       3778999999999999999999999999999988744 4456677789999999


Q ss_pred             cC-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecC--CCCcceEEEEEEeCCccEEEEEeCCCceeeee
Q 016257          163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK--DGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (392)
Q Consensus       163 ~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~  239 (392)
                      +| ++..|++++.|++|++||++++.....+..++...+..+.|+|  ++..     +++++.|+.|++||+++++++..
T Consensus       149 ~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----l~s~s~D~~i~iWd~~~~~~~~~  223 (304)
T 2ynn_A          149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY-----MITASDDLTIKIWDYQTKSCVAT  223 (304)
T ss_dssp             CTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCE-----EEEEETTSEEEEEETTTTEEEEE
T ss_pred             CCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCE-----EEEEcCCCeEEEEeCCCCcccee
Confidence            99 6789999999999999999988887777766666799999987  4454     79999999999999999999999


Q ss_pred             ecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCC--eEEEEeCCCeEEEEEe
Q 016257          240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR--VVLTASKEWGAMITKL  317 (392)
Q Consensus       240 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~iw~~  317 (392)
                      +..|...|.+++|+|++.+|++|+.||.|++||+++++....+ ..| ...+.+++|+|++.  ++++|+.| .+.+|++
T Consensus       224 ~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~  300 (304)
T 2ynn_A          224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL-NVG-LERSWCIATHPTGRKNYIASGFDN-GFTVLSL  300 (304)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE-CCS-SSSEEEEEECTTCGGGCEEEEETT-EEEEEEC
T ss_pred             eCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec-cCC-CccEEEEEECCCCCceEEEEecCC-ceEEEEe
Confidence            9999999999999999999999999999999999999988877 466 78999999999886  57777655 6777776


Q ss_pred             e
Q 016257          318 T  318 (392)
Q Consensus       318 ~  318 (392)
                      .
T Consensus       301 ~  301 (304)
T 2ynn_A          301 G  301 (304)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=9.2e-45  Score=314.18  Aligned_cols=290  Identities=11%  Similarity=0.097  Sum_probs=236.7

Q ss_pred             eEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC
Q 016257           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (392)
Q Consensus        55 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (392)
                      ...++.+|.+.|++++|+|++++|++++.||.|++||+.++.....+.       .|..+|.+++|+|++++|++|+.|+
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~s~d~   77 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ-------VTETPVRAGKFIARKNWIIVGSDDF   77 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-------CCSSCEEEEEEEGGGTEEEEEETTS
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee-------ccCCcEEEEEEeCCCCEEEEECCCC
Confidence            456788999999999999999999999999999999998876554443       2667899999999999999999999


Q ss_pred             cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCC-CCcce
Q 016257          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD-GTKPF  213 (392)
Q Consensus       135 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~  213 (392)
                      +|++||+++++.+..+..|...|.+++|+|++++|++++.|++|++||++++.........+...|.+++|+|+ +..  
T Consensus        78 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~--  155 (304)
T 2ynn_A           78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST--  155 (304)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTE--
T ss_pred             EEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCE--
Confidence            99999999999998888899999999999999999999999999999998875444333344568999999995 554  


Q ss_pred             EEEEEEeCCccEEEEEeCCCceeeeeec-ccCCCcEEEEECC--CCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcc
Q 016257          214 LFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS  290 (392)
Q Consensus       214 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  290 (392)
                         +++++.|+.|++||+++......+. .+...+..+.|+|  ++.+|++|+.|+.|++||+++++.+..+ .+| ...
T Consensus       156 ---l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~-~~h-~~~  230 (304)
T 2ynn_A          156 ---FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGH-MSN  230 (304)
T ss_dssp             ---EEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE-ECC-SSC
T ss_pred             ---EEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee-CCC-CCC
Confidence               7999999999999998876654443 4557899999987  7789999999999999999999988877 588 899


Q ss_pred             eEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeeee-eeeee--eeec-eEEEEeeecceeeeecccc
Q 016257          291 IALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYS-LLLAL--FLAS-AVVFYIFFENSDSFWNFPV  358 (392)
Q Consensus       291 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~--~~~~-~~~~~~~~d~~i~~W~~~~  358 (392)
                      |.+++|+|++++|++|+.||.|++|++...+......... .....  .... ...++++.++.+.+|++..
T Consensus       231 v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~  302 (304)
T 2ynn_A          231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN  302 (304)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence            9999999999999999999999999987654332221100 00011  1111 2235566788888888764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.9e-44  Score=316.67  Aligned_cols=302  Identities=12%  Similarity=0.108  Sum_probs=234.3

Q ss_pred             ceEEEeeCCCC-CeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC
Q 016257           54 LVTYVFDESEG-DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (392)
Q Consensus        54 ~~~~~~~~h~~-~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  132 (392)
                      .....+.+|.+ .|.+++|+|+|++||+|+.|++|+|||+.++........    ...|...|.+++|+|++++|++|+.
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~----~~~h~~~v~~~~~sp~g~~l~s~s~   81 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVL----SEGHQRTVRKVAWSPCGNYLASASF   81 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEE----CSSCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeee----ccccCCcEEEEEECCCCCEEEEEEC
Confidence            34567888988 999999999999999999999999999987753222111    1247889999999999999999999


Q ss_pred             CCcEEEEeCCCCc--eeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee---eEEEecCCCcceEEEEecC
Q 016257          133 DGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEKIELCRFSK  207 (392)
Q Consensus       133 dg~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~  207 (392)
                      |+++++|++.++.  .+..+.+|...|.+++|+|++++|++++.|++|++||++++..   +..+.. +...|.+++|+|
T Consensus        82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~p  160 (345)
T 3fm0_A           82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS-HTQDVKHVVWHP  160 (345)
T ss_dssp             TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC-CCSCEEEEEECS
T ss_pred             CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC-cCCCeEEEEECC
Confidence            9999999998764  4556777888999999999999999999999999999987643   344444 455799999999


Q ss_pred             CCCcceEEEEEEeCCccEEEEEeCCCce--eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCc---------
Q 016257          208 DGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM---------  276 (392)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---------  276 (392)
                      ++..     +++++.|+.|++||.+.++  ....+..|...|++++|+|+|++|++++.|++|++||....         
T Consensus       161 ~~~~-----l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~  235 (345)
T 3fm0_A          161 SQEL-----LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS  235 (345)
T ss_dssp             SSSC-----EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC
T ss_pred             CCCE-----EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceee
Confidence            9997     8999999999999998765  34677889999999999999999999999999999997432         


Q ss_pred             ------eeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccc--ceeeee--------eeeee-ee-e
Q 016257          277 ------EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWK--EWQIYS--------LLLAL-FL-A  338 (392)
Q Consensus       277 ------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~--------~~~~~-~~-~  338 (392)
                            +.+..+...| ...|.+++|+|++..|++++.|+.|++|+........  ......        .+... +. .
T Consensus       236 ~~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~  314 (345)
T 3fm0_A          236 GSDPSWKCICTLSGFH-SRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPK  314 (345)
T ss_dssp             ---CEEEEEEEECSSC-SSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSS
T ss_pred             ccCCccceeEEecCCC-CCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCC
Confidence                  1222332336 7899999999999999999999999999987543211  111100        01111 11 1


Q ss_pred             c-eEEEEeeecceeeeecccccccccCCC
Q 016257          339 S-AVVFYIFFENSDSFWNFPVARNQHGGP  366 (392)
Q Consensus       339 ~-~~~~~~~~d~~i~~W~~~~~~~~~~~p  366 (392)
                      . ..+++++.|+.|++|++..++...+.|
T Consensus       315 ~~~~laS~s~Dg~v~~W~~~~~~~~~~~~  343 (345)
T 3fm0_A          315 EPGLLASCSDDGEVAFWKYQRPEGLHHHH  343 (345)
T ss_dssp             STTEEEEEETTSCEEEEEECC--------
T ss_pred             CceEEEEcCCCCcEEEEEecCCCCccccc
Confidence            2 368888999999999999887665544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.4e-44  Score=316.60  Aligned_cols=288  Identities=13%  Similarity=0.109  Sum_probs=239.7

Q ss_pred             ceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC
Q 016257           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (392)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (392)
                      .....+.+|.+.|++++|+|++++|++|+.|++|++||+.+++....+.       .|...|.+++|+|++++|++|+.|
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~s~~~d  118 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP-------LRSSWVMTCAYAPSGNYVACGGLD  118 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-------CSSSCEEEEEECTTSSEEEEEETT
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee-------cCCccEEEEEECCCCCEEEEEeCC
Confidence            4566799999999999999999999999999999999998876544433       256789999999999999999999


Q ss_pred             CcEEEEeCCCCc----eeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCC
Q 016257          134 GHLRIMHWPSLR----IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (392)
Q Consensus       134 g~i~i~d~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (392)
                      +.+++|++.+.+    ....+..|...|.++.|++++. +++++.|++|++||+++++.+..+..|. ..|.+++|+|++
T Consensus       119 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~-~~v~~~~~~~~~  196 (340)
T 1got_B          119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT-GDVMSLSLAPDT  196 (340)
T ss_dssp             CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEECTTS
T ss_pred             CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCC-CceEEEEECCCC
Confidence            999999998753    3445567778999999998775 8899999999999999999988887654 479999999999


Q ss_pred             CcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCc
Q 016257          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT  289 (392)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  289 (392)
                      ..     +++++.|+.|++||+++++....+..|...|++++|+|++++|++|+.||.|++||+++++....+.......
T Consensus       197 ~~-----l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~  271 (340)
T 1got_B          197 RL-----FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC  271 (340)
T ss_dssp             SE-----EEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred             CE-----EEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCccc
Confidence            86     7899999999999999999999999999999999999999999999999999999999988766543211145


Q ss_pred             ceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceee---eeeeeeeeeeceEEEEeeecceeeeec
Q 016257          290 SIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI---YSLLLALFLASAVVFYIFFENSDSFWN  355 (392)
Q Consensus       290 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~i~~W~  355 (392)
                      .|++++|+|+|++|++|+.||.|++|++...........   .............+++++.|+.|++||
T Consensus       272 ~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            799999999999999999999999999875543222110   001111112334678888999999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.1e-44  Score=318.47  Aligned_cols=287  Identities=17%  Similarity=0.189  Sum_probs=243.7

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .++|+|++|+|++.   ++++|+.      |+.+++|+..        .......+..|...|.+++|+|++.+|++|+.
T Consensus        64 ~~~V~~~~~s~d~~---~l~s~s~------Dg~v~vWd~~--------~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~  126 (354)
T 2pbi_B           64 GNKVLCMDWCKDKR---RIVSSSQ------DGKVIVWDSF--------TTNKEHAVTMPCTWVMACAYAPSGCAIACGGL  126 (354)
T ss_dssp             SSCEEEEEECTTSS---EEEEEET------TSEEEEEETT--------TCCEEEEEECSSSCCCEEEECTTSSEEEEEST
T ss_pred             CCeEEEEEECCCCC---EEEEEeC------CCeEEEEECC--------CCCcceEEecCCCCEEEEEECCCCCEEEEeeC
Confidence            46899999999984   4665554      7789999865        33445567788999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      |+.+++|++......... ........|...|.+++|+|++..|++++.|++|++||+++++.+..+..|...|.+++|+
T Consensus       127 d~~i~v~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~  205 (354)
T 2pbi_B          127 DNKCSVYPLTFDKNENMA-AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLA  205 (354)
T ss_dssp             TSEEEEEECCCCTTCCSG-GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             CCCEEEEEEecccccccc-ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEE
Confidence            999999998654311110 0000111378899999999999999999999999999999999988888888899999998


Q ss_pred             C--CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec
Q 016257          164 L--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (392)
Q Consensus       164 ~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~  241 (392)
                      |  ++++|++++.|++|++||+++++++..+..|. ..|.+++|+|++..     +++++.|+.|++||++..+.+..+.
T Consensus       206 ~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~-~~v~~v~~~p~~~~-----l~s~s~D~~v~lwd~~~~~~~~~~~  279 (354)
T 2pbi_B          206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE-SDVNSVRYYPSGDA-----FASGSDDATCRLYDLRADREVAIYS  279 (354)
T ss_dssp             CCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             eCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-CCeEEEEEeCCCCE-----EEEEeCCCeEEEEECCCCcEEEEEc
Confidence            7  56899999999999999999999988887654 47999999999987     7999999999999999887765554


Q ss_pred             cc--CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEE
Q 016257          242 LL--RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (392)
Q Consensus       242 ~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  316 (392)
                      .+  ...+.+++|+|++++|++|+.|+.|++||+.+++.+..+ .+| ...|++++|+|+|++|++|+.||.|++|+
T Consensus       280 ~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l-~~h-~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          280 KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL-FGH-ENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE-CCC-SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE-ECC-CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            33  347899999999999999999999999999998877766 588 89999999999999999999999999995

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.7e-45  Score=325.43  Aligned_cols=294  Identities=16%  Similarity=0.190  Sum_probs=242.8

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .++|++++|+|++.   ++++|+.      |+.|++|+..        .......+.+|...|.+++|+|++++|++|+.
T Consensus        66 ~~~V~~~~~sp~~~---~l~s~s~------D~~v~iWd~~--------~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~  128 (380)
T 3iz6_a           66 SGKVYSLDWTPEKN---WIVSASQ------DGRLIVWNAL--------TSQKTHAIKLHCPWVMECAFAPNGQSVACGGL  128 (380)
T ss_dssp             SSCEEEEEECTTSS---CEEEEET------TSEEEEEETT--------TTEEEEEEECCCTTCCCCEECTTSSEEEECCS
T ss_pred             ccEEEEEEEcCCCC---EEEEEeC------CCeEEEEECC--------CCccceEEecCCCCEEEEEECCCCCEEEEeeC
Confidence            47899999999984   4665554      7789999876        44556778899999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeecc-----cCCCCcE
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDE-----PKAHKSV  157 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~i  157 (392)
                      |+.+++|++.+................|.+.+.++.|+|+ +..|++|+.|++|++||+++++.+..+     ..|...|
T Consensus       129 d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v  208 (380)
T 3iz6_a          129 DSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV  208 (380)
T ss_dssp             SSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE
T ss_pred             CCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe
Confidence            9999999997643211111111112357889999999996 457999999999999999999877554     4566789


Q ss_pred             EEEEecC-CCCeEEEEcCCCcEEEEECCC-CeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce
Q 016257          158 LDMDFSL-DSEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (392)
Q Consensus       158 ~~i~~~~-~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~  235 (392)
                      .+++|++ ++++|++|+.|++|++||++. ++.+..+..| ...|.+++|+|++..     +++++.|+.|++||+++++
T Consensus       209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~-----l~s~s~D~~i~lwd~~~~~  282 (380)
T 3iz6_a          209 LSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGH-EGDINSVKFFPDGQR-----FGTGSDDGTCRLFDMRTGH  282 (380)
T ss_dssp             EEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCC-SSCCCEEEECTTSSE-----EEEECSSSCEEEEETTTTE
T ss_pred             EEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCc-CCCeEEEEEecCCCe-----EEEEcCCCeEEEEECCCCc
Confidence            9999987 889999999999999999984 4666666655 458999999999997     8999999999999999988


Q ss_pred             eeeeecccC-------CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee---ccccCcceEEEEEeeCCCeEEE
Q 016257          236 KIGHKRLLR-------KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK---RLHLGTSIALVEFCPTQRVVLT  305 (392)
Q Consensus       236 ~~~~~~~~~-------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~i~~~~~s~~~~~l~~  305 (392)
                      .+..+..+.       ..+++++|+|+|++|++|+.||.|++||+.+++....+.   .+| ...|++++|+|+|++|++
T Consensus       283 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~s  361 (380)
T 3iz6_a          283 QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH-EGRISCLGLSSDGSALCT  361 (380)
T ss_dssp             EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC-CCCCCEEEECSSSSEEEE
T ss_pred             EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC-CCceEEEEECCCCCEEEE
Confidence            876655432       248899999999999999999999999999887665442   468 889999999999999999


Q ss_pred             EeCCCeEEEEEeecCc
Q 016257          306 ASKEWGAMITKLTVPA  321 (392)
Q Consensus       306 ~~~dg~i~iw~~~~~~  321 (392)
                      |+.|+.|++|++..+.
T Consensus       362 gs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          362 GSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             ECTTSCEEEEECCSSS
T ss_pred             eeCCCCEEEEecCCCc
Confidence            9999999999998654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6.6e-45  Score=322.78  Aligned_cols=304  Identities=18%  Similarity=0.234  Sum_probs=237.2

Q ss_pred             CCceeeeecCCCCCcceeEEEeCCC-CCCCCCcCceeEEEEcCCCCcccc--CCceEEEeeCCCCCeeEEEEcCCCCeEE
Q 016257            3 GGGTVTCGSWIKRPENVNLVVLGKS-SRASSSPSVLEIFSFDPKTTSVYT--SPLVTYVFDESEGDPMTIAVNPSGDDFV   79 (392)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~-~~~~~~~~~i~i~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~sp~~~~l~   79 (392)
                      .++||+|++|+|++   .++++|++ ...+|.+|+|++|.++........  .......|.+|...|.+++++  ++.++
T Consensus        13 ~g~PV~sv~fs~dg---~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~   87 (365)
T 4h5i_A           13 VGYPAYGAKFLNND---TLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIIL   87 (365)
T ss_dssp             CSSCEEEEEEEETT---EEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEE
T ss_pred             CCCCEEEEEEeCCC---cEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEE
Confidence            36899999999998   56666654 334678999999999866543321  122345678899999998775  45666


Q ss_pred             EE-----------eCCCeEEEEEEeCCccceeeccc--cCCCCCCCCCeEEEEecCCCCEEEEEe--CCCcEEEEeCCCC
Q 016257           80 CS-----------TTNGGCKLFEVYGGATDINLLAK--KMPPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSL  144 (392)
Q Consensus        80 ~~-----------~~d~~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~  144 (392)
                      +|           +.|+.+++|++............  ......+...+.+++|||||+++++++  .|++|++||++++
T Consensus        88 ~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~  167 (365)
T 4h5i_A           88 VGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL  167 (365)
T ss_dssp             EECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT
T ss_pred             EEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC
Confidence            65           35778999999876543332211  111223456789999999999987654  6899999999999


Q ss_pred             ceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEE-EecCCCcceEEEEecCCCCcceEEEEEEeCCc
Q 016257          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (392)
Q Consensus       145 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (392)
                      +.+..+ .++..|.+++|+|||+++++++. +.+++|+..+++.+.. ....+...+.+++|+|++..     +++++.+
T Consensus       168 ~~~~~~-~~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~-----l~~~s~d  240 (365)
T 4h5i_A          168 TEKFEI-ETRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTV-----LIAASLK  240 (365)
T ss_dssp             EEEEEE-ECSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEE-----EEEEEES
T ss_pred             cEEEEe-CCCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCE-----EEEEecC
Confidence            887665 46678999999999999999985 4577777777766543 33445668999999999987     5665555


Q ss_pred             c----EEEEEeCCCcee----eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEE
Q 016257          224 A----LLAVYDISTWNK----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVE  295 (392)
Q Consensus       224 ~----~i~v~d~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  295 (392)
                      +    .+.+||+.....    ...+..|...|++++|+|+|++||+|+.|+.|+|||+++++.+..+..+| ...|++++
T Consensus       241 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH-~~~V~~v~  319 (365)
T 4h5i_A          241 KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH-SFAITEVT  319 (365)
T ss_dssp             SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS-SSCEEEEE
T ss_pred             CcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc-cCCEEEEE
Confidence            4    788999876543    34556788899999999999999999999999999999999988776789 99999999


Q ss_pred             EeeCCCeEEEEeCCCeEEEEEeec
Q 016257          296 FCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       296 ~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      |+|||++|++|+.|++|+||++..
T Consensus       320 fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          320 ISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             ECTTSCEEEEEETTSEEEEEECCT
T ss_pred             ECCCCCEEEEEeCCCeEEEEEcCC
Confidence            999999999999999999999964

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.1e-44  Score=314.56  Aligned_cols=293  Identities=11%  Similarity=0.103  Sum_probs=231.4

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d   84 (392)
                      ++|++++|+|++.   ++++|+.      |+.|++|.++....     ........+|...|.+++|+|++++|++|+.|
T Consensus        17 ~~v~~l~~sp~g~---~las~~~------D~~i~iw~~~~~~~-----~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D   82 (345)
T 3fm0_A           17 SRCWFLAWNPAGT---LLASCGG------DRRIRIWGTEGDSW-----ICKSVLSEGHQRTVRKVAWSPCGNYLASASFD   82 (345)
T ss_dssp             SCEEEEEECTTSS---CEEEEET------TSCEEEEEEETTEE-----EEEEEECSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CcEEEEEECCCCC---EEEEEcC------CCeEEEEEcCCCcc-----eeeeeeccccCCcEEEEEECCCCCEEEEEECC
Confidence            4899999999984   4665554      67799999873310     01122346899999999999999999999999


Q ss_pred             CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc---eeecccCCCCcEEEEE
Q 016257           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR---IILDEPKAHKSVLDMD  161 (392)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~i~  161 (392)
                      +++++|++...........     ..|...|.+++|+|++++|++|+.|++|++||++++.   .+..+..|...|.+++
T Consensus        83 ~~v~iw~~~~~~~~~~~~~-----~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~  157 (345)
T 3fm0_A           83 ATTCIWKKNQDDFECVTTL-----EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV  157 (345)
T ss_dssp             SCEEEEEECCC-EEEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEE
T ss_pred             CcEEEEEccCCCeEEEEEc-----cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEE
Confidence            9999999977642211111     1378899999999999999999999999999998764   3445566777999999


Q ss_pred             ecCCCCeEEEEcCCCcEEEEECCCCee--eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc-----
Q 016257          162 FSLDSEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-----  234 (392)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~-----  234 (392)
                      |+|++++|++++.|++|++||++.++.  ...+..| ...|.+++|+|+++.     +++++.|+.|++||....     
T Consensus       158 ~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h-~~~v~~l~~sp~g~~-----l~s~s~D~~v~iW~~~~~~~~~~  231 (345)
T 3fm0_A          158 WHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH-ESTVWSLAFDPSGQR-----LASCSDDRTVRIWRQYLPGNEQG  231 (345)
T ss_dssp             ECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECTTSSE-----EEEEETTSCEEEEEEECTTCTTC
T ss_pred             ECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC-CCceEEEEECCCCCE-----EEEEeCCCeEEEeccccCCCCcc
Confidence            999999999999999999999988753  3455544 558999999999997     899999999999996422     


Q ss_pred             ----------eeeeeecc-cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCcee--------eeeeeccccCcceEEEE
Q 016257          235 ----------NKIGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI--------NHWSKRLHLGTSIALVE  295 (392)
Q Consensus       235 ----------~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~i~~~~  295 (392)
                                +++..+.. |...|.+++|+|++..|++++.|+.|++|+......        ......+| ...|++++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~  310 (345)
T 3fm0_A          232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH-SQDVNCVA  310 (345)
T ss_dssp             CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS-SSCEEEEE
T ss_pred             ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc-cCcEeEeE
Confidence                      22223333 778999999999999999999999999999876431        11222478 88999999


Q ss_pred             EeeCCC-eEEEEeCCCeEEEEEeecCccc
Q 016257          296 FCPTQR-VVLTASKEWGAMITKLTVPADW  323 (392)
Q Consensus       296 ~s~~~~-~l~~~~~dg~i~iw~~~~~~~~  323 (392)
                      |+|++. +|++|+.||.|++|++...+..
T Consensus       311 ~~p~~~~~laS~s~Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          311 WNPKEPGLLASCSDDGEVAFWKYQRPEGL  339 (345)
T ss_dssp             ECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred             EeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence            999985 9999999999999999876543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.1e-43  Score=306.02  Aligned_cols=284  Identities=16%  Similarity=0.228  Sum_probs=246.4

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ..+|++++|+|++.   ++++|+.      ++.+++|...        .......+.+|...|.+++|+|++++|++++.
T Consensus        23 ~~~v~~~~~s~~~~---~l~s~~~------dg~i~iw~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~   85 (312)
T 4ery_A           23 TKAVSSVKFSPNGE---WLASSSA------DKLIKIWGAY--------DGKFEKTISGHKLGISDVAWSSDSNLLVSASD   85 (312)
T ss_dssp             SSCEEEEEECTTSS---EEEEEET------TSCEEEEETT--------TCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCcEEEEEECCCCC---EEEEeeC------CCeEEEEeCC--------CcccchhhccCCCceEEEEEcCCCCEEEEECC
Confidence            46899999999984   4555544      6679999875        33455678899999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      |+.|++||+.+++....+.       .|...|.+++|+|++++|++++.|+.|++||+++++....+..|...|.+++|+
T Consensus        86 d~~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  158 (312)
T 4ery_A           86 DKTLKIWDVSSGKCLKTLK-------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN  158 (312)
T ss_dssp             TSEEEEEETTTCCEEEEEE-------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             CCEEEEEECCCCcEEEEEc-------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEc
Confidence            9999999998877554443       267889999999999999999999999999999999888888888899999999


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeeccc
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~  243 (392)
                      |++++|++++.|+.|++||+++++.+..+...+...+..++|+|+++.     +++++.|+.|++||+++++.+..+..|
T Consensus       159 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~d~~i~iwd~~~~~~~~~~~~~  233 (312)
T 4ery_A          159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-----ILAATLDNTLKLWDYSKGKCLKTYTGH  233 (312)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSE-----EEEEETTTEEEEEETTTTEEEEEECSS
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCE-----EEEEcCCCeEEEEECCCCcEEEEEEec
Confidence            999999999999999999999999888877666668999999999997     788999999999999999988888777


Q ss_pred             CCCcE---EEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEe--CCCeEEEEEee
Q 016257          244 RKPAS---VLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS--KEWGAMITKLT  318 (392)
Q Consensus       244 ~~~v~---~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~iw~~~  318 (392)
                      .....   .....+++.+|++|+.||.|++||+++++....+ .+| ...|.+++|+|++++|++++  .|+.|++|+.+
T Consensus       234 ~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h-~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGH-TDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE-CCC-SSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             CCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh-hcc-CCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            65432   2333467899999999999999999999888776 578 88999999999999999997  69999999864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.8e-43  Score=306.91  Aligned_cols=288  Identities=11%  Similarity=0.105  Sum_probs=242.8

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .++|++++|+|++.+  ++++|+.      |+.+++|.+......   .......+.+|...|.+++|+|++++|++|+.
T Consensus        17 ~~~V~~l~~~~~~~~--~l~s~s~------D~~v~~W~~~~~~~~---~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~   85 (319)
T 3frx_A           17 NGWVTSLATSAGQPN--LLLSASR------DKTLISWKLTGDDQK---FGVPVRSFKGHSHIVQDCTLTADGAYALSASW   85 (319)
T ss_dssp             SSCEEEEEECSSCTT--EEEEEET------TSEEEEEEEEEETTE---EEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             cceEEEEEccCCCcc--EEEEecC------CccEEEecCCCCCcc---ccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence            578999999997644  5565554      788999998643211   12345678999999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      |++|++||+.+++....+.       .|...|.+++|+|++.+|++|+.|++|++||++. +.+..+..|...|.++.|+
T Consensus        86 D~~v~~wd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~  157 (319)
T 3frx_A           86 DKTLRLWDVATGETYQRFV-------GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVV  157 (319)
T ss_dssp             TSEEEEEETTTTEEEEEEE-------CCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEEC
T ss_pred             CCEEEEEECCCCCeeEEEc-------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEc
Confidence            9999999998887654443       3778999999999999999999999999999964 5666777888899999999


Q ss_pred             CC------CCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceee
Q 016257          164 LD------SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI  237 (392)
Q Consensus       164 ~~------~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~  237 (392)
                      |.      +..+++++.|+.|++||+++.+....+..|. ..|.+++|+|++..     +++++.|+.|++||+++++.+
T Consensus       158 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~-~~v~~~~~sp~g~~-----l~s~~~dg~i~iwd~~~~~~~  231 (319)
T 3frx_A          158 PNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN-SNINTLTASPDGTL-----IASAGKDGEIMLWNLAAKKAM  231 (319)
T ss_dssp             CC------CCEEEEEETTSCEEEEETTTTEEEEEECCCC-SCEEEEEECTTSSE-----EEEEETTCEEEEEETTTTEEE
T ss_pred             cCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCC-CcEEEEEEcCCCCE-----EEEEeCCCeEEEEECCCCcEE
Confidence            85      4489999999999999999998888877654 48999999999997     899999999999999999888


Q ss_pred             eeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee-------ccccCcceEEEEEeeCCCeEEEEeCCC
Q 016257          238 GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK-------RLHLGTSIALVEFCPTQRVVLTASKEW  310 (392)
Q Consensus       238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~i~~~~~s~~~~~l~~~~~dg  310 (392)
                      ..+.. ...+.+++|+|++.+|++++.+ .+++|++........+.       ..| ...+.+++|+|||++|++|+.||
T Consensus       232 ~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~sg~~Dg  308 (319)
T 3frx_A          232 YTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAA-EPHAVSLAWSADGQTLFAGYTDN  308 (319)
T ss_dssp             EEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGG-CCCEEEEEECTTSSEEEEEETTS
T ss_pred             EEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCc-CcceeEEEECCCCCEEEEeecCc
Confidence            77765 4689999999999999998865 49999998877655442       223 56799999999999999999999


Q ss_pred             eEEEEEeec
Q 016257          311 GAMITKLTV  319 (392)
Q Consensus       311 ~i~iw~~~~  319 (392)
                      .|++|++.+
T Consensus       309 ~i~vWd~~t  317 (319)
T 3frx_A          309 VIRVWQVMT  317 (319)
T ss_dssp             CEEEEEEEE
T ss_pred             eEEEEEEee
Confidence            999999875

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.1e-43  Score=306.65  Aligned_cols=293  Identities=12%  Similarity=0.169  Sum_probs=237.6

Q ss_pred             ceEEEeeCCCCCeeEEEEcCCC-CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC
Q 016257           54 LVTYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (392)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~sp~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  132 (392)
                      .+..++.+|.+.|++++|+|++ ++|++|+.|++|++|++............  ....|...|.+++|+|++++|++|+.
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~--~~~~h~~~v~~~~~s~dg~~l~s~s~   85 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVR--SFKGHSHIVQDCTLTADGAYALSASW   85 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEE--EEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccce--EEeCCcccEEEEEECCCCCEEEEEeC
Confidence            4456789999999999999965 79999999999999999754322111000  01147889999999999999999999


Q ss_pred             CCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcc
Q 016257          133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (392)
Q Consensus       133 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (392)
                      |++|++||+++++....+..|...|.+++|+|++++|++++.|++|++||++ ++++..+..+ ...+.+++|+|.....
T Consensus        86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h-~~~v~~~~~~~~~~~~  163 (319)
T 3frx_A           86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGH-NDWVSQVRVVPNEKAD  163 (319)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCC-SSCEEEEEECCC----
T ss_pred             CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEecc-CCcEEEEEEccCCCCC
Confidence            9999999999999988888999999999999999999999999999999996 4566666655 4579999999964310


Q ss_pred             -eEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcce
Q 016257          213 -FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI  291 (392)
Q Consensus       213 -~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i  291 (392)
                       -...+++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++.||.|++||+.+++.+..+.  + ...|
T Consensus       164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--~-~~~v  240 (319)
T 3frx_A          164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS--A-QDEV  240 (319)
T ss_dssp             --CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--C-CSCE
T ss_pred             CCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec--C-CCcE
Confidence             00017899999999999999999888899999999999999999999999999999999999999887763  2 5689


Q ss_pred             EEEEEeeCCCeEEEEeCCCeEEEEEeecCcccc----------------ceeeeeeeeeeeeeceEEEEeeecceeeeec
Q 016257          292 ALVEFCPTQRVVLTASKEWGAMITKLTVPADWK----------------EWQIYSLLLALFLASAVVFYIFFENSDSFWN  355 (392)
Q Consensus       292 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~  355 (392)
                      .+++|+|++.+|++++.+ .+++|++.......                +..+.+.+     ....+++++.|+.|++|+
T Consensus       241 ~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-----dg~~l~sg~~Dg~i~vWd  314 (319)
T 3frx_A          241 FSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA-----DGQTLFAGYTDNVIRVWQ  314 (319)
T ss_dssp             EEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT-----TSSEEEEEETTSCEEEEE
T ss_pred             EEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC-----CCCEEEEeecCceEEEEE
Confidence            999999999999888765 69999986432111                11222222     344677888999999999


Q ss_pred             cccc
Q 016257          356 FPVA  359 (392)
Q Consensus       356 ~~~~  359 (392)
                      +.++
T Consensus       315 ~~t~  318 (319)
T 3frx_A          315 VMTA  318 (319)
T ss_dssp             EEEC
T ss_pred             Eeec
Confidence            9865

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.4e-43  Score=309.99  Aligned_cols=284  Identities=11%  Similarity=0.135  Sum_probs=237.7

Q ss_pred             ceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC
Q 016257           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (392)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (392)
                      .....+.+|.+.|++++|+|++++|++|+.|++|++||..+.+....+..       |...|.+++|+|++.+|++|+.|
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-------~~~~v~~~~~sp~g~~lasg~~d  127 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM-------PCTWVMACAYAPSGCAIACGGLD  127 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-------SSSCCCEEEECTTSSEEEEESTT
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec-------CCCCEEEEEECCCCCEEEEeeCC
Confidence            35567899999999999999999999999999999999877765443322       45689999999999999999999


Q ss_pred             CcEEEEeCCCCc------eeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecC
Q 016257          134 GHLRIMHWPSLR------IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK  207 (392)
Q Consensus       134 g~i~i~d~~~~~------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  207 (392)
                      +.+++|++....      ....+..|...|.+++|+|++..|++++.|++|++||+++++.+..+..|. ..+.+++|+|
T Consensus       128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~-~~v~~~~~~~  206 (354)
T 2pbi_B          128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHG-ADVLCLDLAP  206 (354)
T ss_dssp             SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEECC
T ss_pred             CCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCC-CCeEEEEEEe
Confidence            999999986432      233345677789999999999999999999999999999999998888665 4799999988


Q ss_pred             C--CCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecc
Q 016257          208 D--GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL  285 (392)
Q Consensus       208 ~--~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  285 (392)
                      +  +..     +++++.|+.|++||+++++++..+..|...|++++|+|++.+|++++.|++|++||+++++....+...
T Consensus       207 ~~~g~~-----l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~  281 (354)
T 2pbi_B          207 SETGNT-----FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE  281 (354)
T ss_dssp             CSSCCE-----EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred             CCCCCE-----EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence            5  454     789999999999999999999999999999999999999999999999999999999988766554322


Q ss_pred             ccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccc--------ceeeeeeeeeeeeeceEEEEeeecceeeeec
Q 016257          286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWK--------EWQIYSLLLALFLASAVVFYIFFENSDSFWN  355 (392)
Q Consensus       286 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~  355 (392)
                      .....+.+++|+|++++|++|+.|+.|++|++.......        +..+.+.+     ....+++++.|+.|++|+
T Consensus       282 ~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-----dg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          282 SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-----DGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-----TSSCEEEEETTSEEEEEC
T ss_pred             CcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-----CCCEEEEEcCCCCEEecC
Confidence            114578999999999999999999999999986554322        22222332     344677888999999996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=8.8e-43  Score=307.05  Aligned_cols=301  Identities=15%  Similarity=0.136  Sum_probs=230.6

Q ss_pred             ceEEEeeCCCCCeeEEEE-----cC-CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEE
Q 016257           54 LVTYVFDESEGDPMTIAV-----NP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF  127 (392)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~-----sp-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  127 (392)
                      .....+.+|.+.|++++|     ++ ++++|++|+.|++|++||+...+..............|...|.+++|+|++.++
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l   91 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA   91 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence            345678999999999999     76 899999999999999999976542111000001112478899999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe--cCCCcceEEEEe
Q 016257          128 AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRF  205 (392)
Q Consensus       128 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~--~~~~~~v~~~~~  205 (392)
                      ++++.|++|++||+++++....+..|...|.+++|+|++++|++++.|++|++||+... ......  ..+...+.+++|
T Consensus        92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~  170 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRY  170 (343)
T ss_dssp             EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEE
T ss_pred             EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeee
Confidence            99999999999999999998888889899999999999999999999999999999743 333332  134557999999


Q ss_pred             cCCCCcce-----EEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce-ee
Q 016257          206 SKDGTKPF-----LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME-IN  279 (392)
Q Consensus       206 ~~~~~~~~-----~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~  279 (392)
                      +|++....     .-.+++++.|+.|++||. ..+....+..|...|.+++|+|+|++|++|+.||.|++||+.... ..
T Consensus       171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~  249 (343)
T 2xzm_R          171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ  249 (343)
T ss_dssp             CCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCS
T ss_pred             ccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence            99873100     001789999999999995 456667788899999999999999999999999999999995433 33


Q ss_pred             eeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeee----------------eeeeeeeeeceEEE
Q 016257          280 HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIY----------------SLLLALFLASAVVF  343 (392)
Q Consensus       280 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~  343 (392)
                      ..+  .+ ...|.+++|+|++++++++ .|+.|++|++..........+.                ............++
T Consensus       250 ~~~--~~-~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~  325 (343)
T 2xzm_R          250 REF--DA-GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLF  325 (343)
T ss_dssp             EEE--EC-SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEE
T ss_pred             eee--cC-CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEE
Confidence            333  23 5579999999999877655 5778999998755432211100                01111112344677


Q ss_pred             Eeeecceeeeecccccc
Q 016257          344 YIFFENSDSFWNFPVAR  360 (392)
Q Consensus       344 ~~~~d~~i~~W~~~~~~  360 (392)
                      +++.|+.|++|++.++.
T Consensus       326 sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          326 AGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             EEETTSEEEEEEEEEEE
T ss_pred             EecCCceEEEEEEEccC
Confidence            88899999999998775

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.9e-43  Score=313.86  Aligned_cols=283  Identities=17%  Similarity=0.210  Sum_probs=234.1

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeC------------------CCCC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE------------------SEGD   65 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~------------------h~~~   65 (392)
                      .++|.|++|+|+++   ++++|+       ++.+++|.+....        ....+.+                  +...
T Consensus        64 ~~~V~~v~fspdg~---~la~g~-------~~~v~i~~~~~g~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  125 (393)
T 1erj_A           64 TSVVCCVKFSNDGE---YLATGC-------NKTTQVYRVSDGS--------LVARLSDDSAANKDPENLNTSSSPSSDLY  125 (393)
T ss_dssp             SSCCCEEEECTTSS---EEEEEC-------BSCEEEEETTTCC--------EEEEECC-----------------CCCCB
T ss_pred             CCEEEEEEECCCCC---EEEEEc-------CCcEEEEEecCCC--------EEEEecCccccccccccccccccCCCcee
Confidence            46799999999984   466443       4568888875321        1222222                  2335


Q ss_pred             eeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 016257           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR  145 (392)
Q Consensus        66 v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  145 (392)
                      |.+++|+|++++|++|+.|+.|++||+.+++....+.       .|...|.+++|+|++++|++++.|++|++||+++++
T Consensus       126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~  198 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-------GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ  198 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-------cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe
Confidence            9999999999999999999999999998876544332       377899999999999999999999999999999988


Q ss_pred             eeecccCCCCcEEEEEecC-CCCeEEEEcCCCcEEEEECCCCeeeEEEe------cCCCcceEEEEecCCCCcceEEEEE
Q 016257          146 IILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLT------RNSDEKIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       146 ~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~  218 (392)
                      ....+ .++..+.+++|+| ++++|++++.|+.|++||+++++.+..+.      ..+...|.+++|+|++..     ++
T Consensus       199 ~~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-----l~  272 (393)
T 1erj_A          199 CSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS-----VV  272 (393)
T ss_dssp             EEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE-----EE
T ss_pred             eEEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE-----EE
Confidence            76544 3556899999999 89999999999999999999988877663      234568999999999987     79


Q ss_pred             EeCCccEEEEEeCCCce------------eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccc
Q 016257          219 QRGDKALLAVYDISTWN------------KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH  286 (392)
Q Consensus       219 ~~~~d~~i~v~d~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  286 (392)
                      +++.|+.|++||+++..            +...+..|...|.+++|+|++.+|++|+.|+.|++||+++++.+..+ .+|
T Consensus       273 s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l-~~h  351 (393)
T 1erj_A          273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML-QGH  351 (393)
T ss_dssp             EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE-ECC
T ss_pred             EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE-CCC
Confidence            99999999999997632            34456778889999999999999999999999999999999887766 588


Q ss_pred             cCcceEEEEEee------CCCeEEEEeCCCeEEEEEeec
Q 016257          287 LGTSIALVEFCP------TQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       287 ~~~~i~~~~~s~------~~~~l~~~~~dg~i~iw~~~~  319 (392)
                       ...|.+++|++      ++++|++|+.||.|++|++..
T Consensus       352 -~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          352 -RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             -SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             -CCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence             89999999986      688999999999999999874

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-43  Score=307.78  Aligned_cols=290  Identities=15%  Similarity=0.140  Sum_probs=219.1

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEe-eC-CCCCeeEEEEcCCCCeEEEE
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-DE-SEGDPMTIAVNPSGDDFVCS   81 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~sp~~~~l~~~   81 (392)
                      .++|++++|+|+     ++++|+.      ++.|++|++....      ......+ .+ |.+.|.+++|+|++++|++|
T Consensus        14 ~~~v~~~~~s~~-----~las~~~------D~~i~lw~~~~~~------~~~~~~~~~~~h~~~v~~v~~sp~~~~las~   76 (330)
T 2hes_X           14 KEKIWSFDFSQG-----ILATGST------DRKIKLVSVKYDD------FTLIDVLDETAHKKAIRSVAWRPHTSLLAAG   76 (330)
T ss_dssp             SSCEEEEEEETT-----EEEEEES------SSCEEEEECSSSC------CEEEEEECTTCCCSCEEEEEECTTSSEEEEE
T ss_pred             CCceeeeccCCC-----EEEEEcC------CCEEEEEEecCCC------eEEEEEEecCCccCCEEEEEECCCCCEEEEE
Confidence            568999999986     4565544      6779999986431      1222334 34 99999999999999999999


Q ss_pred             eCCCeEEEEEEeCCccc---eeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC----ceeecccCCC
Q 016257           82 TTNGGCKLFEVYGGATD---INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL----RIILDEPKAH  154 (392)
Q Consensus        82 ~~d~~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~  154 (392)
                      +.|++|++|++......   .....   ....|...|.+++|+|++++|++|+.|++|++||++..    +.+..+..|.
T Consensus        77 s~D~~v~iw~~~~~~~~~~~~~~~~---~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~  153 (330)
T 2hes_X           77 SFDSTVSIWAKEESADRTFEMDLLA---IIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHS  153 (330)
T ss_dssp             ETTSCEEEEEC-------CCCEEEE---EEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCS
T ss_pred             eCCCcEEEEEcccCcCccccceeEE---EEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCC
Confidence            99999999998643210   01000   01247889999999999999999999999999999432    3455567788


Q ss_pred             CcEEEEEecCCCCeEEEEcCCCcEEEEECCCC--eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC
Q 016257          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (392)
Q Consensus       155 ~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~  232 (392)
                      ..|.+++|+|++++|++++.|++|++||.+++  +++..+..| ...|.+++|+|++....   +++++.|+.|++||++
T Consensus       154 ~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~---l~s~s~D~~v~iw~~~  229 (330)
T 2hes_X          154 QDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGH-EGTVWSSDFDKTEGVFR---LCSGSDDSTVRVWKYM  229 (330)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECCSSSSCE---EEEEETTSCEEEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCC-CCcEEEEEecCCCCeeE---EEEEeCCCeEEEEEec
Confidence            89999999999999999999999999999776  566666655 45899999999843211   7899999999999997


Q ss_pred             Cc--------eeeeeecc-cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce--eeeeeeccccCc-ceEEEEEee--
Q 016257          233 TW--------NKIGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME--INHWSKRLHLGT-SIALVEFCP--  298 (392)
Q Consensus       233 ~~--------~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~-~i~~~~~s~--  298 (392)
                      .+        .....+.. |...|.+++|++++ +|++++.||.|++||..+++  ........| .. .|.+++|+|  
T Consensus       230 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h-~~~~v~~v~~~~~~  307 (330)
T 2hes_X          230 GDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH-GVYEINVVKWLELN  307 (330)
T ss_dssp             EECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT-TTSCEEEEEEC---
T ss_pred             CCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc-ccceEEEEEEecCC
Confidence            64        23334443 78899999999765 88999999999999998874  232333467 55 899999999  


Q ss_pred             CCCeEEEEeCCCeEEEEEeec
Q 016257          299 TQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       299 ~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      ++++|++|+.||.|++|++..
T Consensus       308 ~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          308 GKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             --CCEEEEETTSEEEEEEC--
T ss_pred             CceEEEEecCCCcEEEEEecc
Confidence            788999999999999999863

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.2e-43  Score=313.85  Aligned_cols=289  Identities=10%  Similarity=0.140  Sum_probs=222.0

Q ss_pred             eCCCCCeeEEEEcCCCCeEEEEeC------CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC
Q 016257           60 DESEGDPMTIAVNPSGDDFVCSTT------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (392)
Q Consensus        60 ~~h~~~v~~~~~sp~~~~l~~~~~------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (392)
                      ..|+..|++++|+|||++|++++.      |+.+++|+..++.....+..   ....|...|.+++|+|++. +++++.|
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~---~~~~~~~~V~~~~~s~d~~-~l~~s~d  114 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT---AGVQTEAGVTDVAWVSEKG-ILVASDS  114 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCS---EEEECSSCEEEEEEETTTE-EEEEETT
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEec---ccCCCCCCEEEEEEcCCCC-EEEEECC
Confidence            469999999999999999999997      67888888766653322211   1224778899999999985 5567889


Q ss_pred             CcEEEEeCCCCceeec----ccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCC
Q 016257          134 GHLRIMHWPSLRIILD----EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (392)
Q Consensus       134 g~i~i~d~~~~~~~~~----~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (392)
                      |+|++||+.+++....    ...|...|.+++|+|++++|++++.|+.|++||+++++.+..+..+. ..|.+++|+|++
T Consensus       115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~-~~v~~v~~s~~~  193 (357)
T 4g56_B          115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS-SEVNCVAACPGK  193 (357)
T ss_dssp             SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEECTTC
T ss_pred             CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC-CCEEEEEEccCC
Confidence            9999999988765432    23567799999999999999999999999999999999998887664 479999999998


Q ss_pred             CcceEEEEEEeCCccEEEEEeCCCceeeeeec--ccCCCcEEEEECCC-CCEEEEEeCCCcEEEEecCCceeeeeeeccc
Q 016257          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKR--LLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINHWSKRLH  286 (392)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  286 (392)
                      ...    +++++.|+.|++||+++++....+.  .+...+.+++|+|+ +.+|++|+.|+.|++||+++++....+ ..|
T Consensus       194 ~~~----~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~-~~~  268 (357)
T 4g56_B          194 DTI----FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS-AVH  268 (357)
T ss_dssp             SSC----EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE-CCC
T ss_pred             Cce----eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE-ecc
Confidence            642    6888999999999999988765543  45678999999997 578999999999999999999887766 577


Q ss_pred             cCcceEEEEEeeCC-CeEEEEeCCCeEEEEEeecCccccceeeeeeeeeee---eeceEEEEeeecceeeeeccccc
Q 016257          287 LGTSIALVEFCPTQ-RVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALF---LASAVVFYIFFENSDSFWNFPVA  359 (392)
Q Consensus       287 ~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~i~~W~~~~~  359 (392)
                       ...|++++|+|++ ++|++|+.|++|+|||++..+........-.+....   .....+++++.|++|++|+++..
T Consensus       269 -~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          269 -SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             -SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             -ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence             8899999999987 579999999999999998654332221111111111   13457788899999999998754

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.3e-43  Score=311.20  Aligned_cols=286  Identities=9%  Similarity=0.063  Sum_probs=222.1

Q ss_pred             CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccc----eeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcE
Q 016257           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD----INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (392)
Q Consensus        61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  136 (392)
                      .|...|.+++|+|||++|++++ |+++++||.......    ............+...|.+++|+|++ .|++|+.||+|
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v  105 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV  105 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred             cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence            4677899999999999998877 667888875321100    00000011112245789999999986 78899999999


Q ss_pred             EEEeCCCCceeec----ccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcc
Q 016257          137 RIMHWPSLRIILD----EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (392)
Q Consensus       137 ~i~d~~~~~~~~~----~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (392)
                      ++||+++++....    ..+|.+.|++++|+|++++|++++.|++|++||+++++++..+..|. ..|.+++|+|++..+
T Consensus       106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~-~~V~~~~~~~~~~~~  184 (344)
T 4gqb_B          106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHA-AQVTCVAASPHKDSV  184 (344)
T ss_dssp             EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEECSSCTTE
T ss_pred             EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcC-CceEEEEecCCCCCc
Confidence            9999998875433    33677899999999999999999999999999999999999988765 489999999998752


Q ss_pred             eEEEEEEeCCccEEEEEeCCCceeeeeec--ccCCCcEEEEECCC-CCEEEEEeCCCcEEEEecCCceeeeeeeccccCc
Q 016257          213 FLFCTVQRGDKALLAVYDISTWNKIGHKR--LLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT  289 (392)
Q Consensus       213 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  289 (392)
                          +++++.|+.|++||+++++....+.  .+...+.+++|+|+ +++|++|+.||.|++||+++++.+..+ .+| ..
T Consensus       185 ----l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~-~~h-~~  258 (344)
T 4gqb_B          185 ----FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS-AVH-SQ  258 (344)
T ss_dssp             ----EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE-ECC-SS
T ss_pred             ----eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE-cCC-CC
Confidence                5789999999999999988876654  34567899999995 578999999999999999999988776 588 89


Q ss_pred             ceEEEEEeeCC-CeEEEEeCCCeEEEEEeecCcccc-------ceeeeeeeeeeeeeceEEEEeeecceeeeeccccc
Q 016257          290 SIALVEFCPTQ-RVVLTASKEWGAMITKLTVPADWK-------EWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVA  359 (392)
Q Consensus       290 ~i~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~  359 (392)
                      .|++++|+|++ ++|++|+.|++|++||+...+...       +..+.+.+.    ....+++++.|++|++|+++..
T Consensus       259 ~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~----~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          259 CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPL----NHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSS----STTEEEEEETTSCEEEEECCC-
T ss_pred             CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCC----CCeEEEEEcCCCeEEEEECCCC
Confidence            99999999998 579999999999999987654322       112222221    1234567889999999999754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-44  Score=321.71  Aligned_cols=300  Identities=14%  Similarity=0.171  Sum_probs=243.5

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCC----CCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEE
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSR----ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC   80 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~----~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~   80 (392)
                      .+|.+++|+|++..  ++++|...+    ..+.++.|++|+++.....     .... ...|...|.+++|+|++++|++
T Consensus        13 ~~v~~~~~sp~g~~--~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~-----~~~~-~~~~~~~v~~~~~s~~~~~l~~   84 (416)
T 2pm9_A           13 SRTATFAWSHDKIP--LLVSGTVSGTVDANFSTDSSLELWSLLAADSE-----KPIA-SLQVDSKFNDLDWSHNNKIIAG   84 (416)
T ss_dssp             EESCBCCBCSSSSC--EEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC-----SCSC-CCCCSSCEEEEEECSSSSCEEE
T ss_pred             hhcceEeeCCCCCC--EEEEEecCcccccccCCCCeEEEEEccCCCCC-----cEEE-EEecCCceEEEEECCCCCeEEE
Confidence            47899999999753  677764432    0146888999998743211     0111 2258899999999999999999


Q ss_pred             EeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCc------eeec---c
Q 016257           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLR------IILD---E  150 (392)
Q Consensus        81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~------~~~~---~  150 (392)
                      ++.|+.|++|++..........   .....|...|.+++|+|+ +++|++++.|+.|++||+++++      ....   .
T Consensus        85 ~~~dg~v~vw~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  161 (416)
T 2pm9_A           85 ALDNGSLELYSTNEANNAINSM---ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS  161 (416)
T ss_dssp             EESSSCEEEECCSSTTSCCCEE---EECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCS
T ss_pred             EccCCeEEEeecccccccccch---hhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccc
Confidence            9999999999998722111011   011237789999999998 8999999999999999998876      3322   2


Q ss_pred             cCCCCcEEEEEecCC-CCeEEEEcCCCcEEEEECCCCeeeEEEecCC-----CcceEEEEecCCCCcceEEEEEEeCCcc
Q 016257          151 PKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNS-----DEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (392)
Q Consensus       151 ~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~d~  224 (392)
                      ..|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..+.     ...+.+++|+|++...    +++++.++
T Consensus       162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----l~~~~~d~  237 (416)
T 2pm9_A          162 MSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTR----VATATGSD  237 (416)
T ss_dssp             CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTE----EEEEECCS
T ss_pred             cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCE----EEEEECCC
Confidence            456678999999998 7899999999999999999999988887653     5689999999998542    67788888


Q ss_pred             ---EEEEEeCCCc-eeeeeec-ccCCCcEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEee
Q 016257          225 ---LLAVYDISTW-NKIGHKR-LLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (392)
Q Consensus       225 ---~i~v~d~~~~-~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  298 (392)
                         .|++||++++ +++..+. .|...+.+++|+| ++++|++++.||.|++||+++++.+..+ ..| ...|.+++|+|
T Consensus       238 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~-~~~-~~~v~~~~~s~  315 (416)
T 2pm9_A          238 NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF-PAR-GNWCFKTKFAP  315 (416)
T ss_dssp             SSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE-ECS-SSCCCCEEECT
T ss_pred             CCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee-cCC-CCceEEEEECC
Confidence               9999999986 5666677 7899999999999 9999999999999999999999888776 477 88999999999


Q ss_pred             CC-CeEEEEeCCCeEEEEEeecCc
Q 016257          299 TQ-RVVLTASKEWGAMITKLTVPA  321 (392)
Q Consensus       299 ~~-~~l~~~~~dg~i~iw~~~~~~  321 (392)
                      ++ .+|++++.||.|++|++....
T Consensus       316 ~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          316 EAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             TCTTEEEECCSSSEEEEEESCCCC
T ss_pred             CCCCEEEEEecCCcEEEEEccCCC
Confidence            99 799999999999999998654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=6.7e-42  Score=301.43  Aligned_cols=291  Identities=10%  Similarity=0.111  Sum_probs=230.4

Q ss_pred             CceeeeecC-----CC-CCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCe
Q 016257            4 GGTVTCGSW-----IK-RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD   77 (392)
Q Consensus         4 ~~~v~~~~w-----~~-~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~   77 (392)
                      ..+|++++|     ++ ++   .++++|+.      |+.|++|++....... ........+.+|...|.+++|+|++.+
T Consensus        21 ~~~V~~~~~~~s~~~~~d~---~~l~sgs~------D~~v~iWd~~~~~~~~-~~~~~~~~l~~h~~~V~~~~~~~~~~~   90 (343)
T 2xzm_R           21 SDWVTSIVAGFSQKENEDS---PVLISGSR------DKTVMIWKLYEEEQNG-YFGIPHKALTGHNHFVSDLALSQENCF   90 (343)
T ss_dssp             SSCEEEEEECCCSSTTCCC---CEEEEEET------TSCEEEEEECSSCCSS-BSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred             hhhhhheeeEEEeecCCCC---CEEEEEcC------CCEEEEEECCcCCccc-ccccccchhccCCCceEEEEECCCCCE
Confidence            468999999     65 54   45666555      7779999987432111 123445678999999999999999999


Q ss_pred             EEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeec--ccCCCC
Q 016257           78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD--EPKAHK  155 (392)
Q Consensus        78 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~  155 (392)
                      |++++.|++|++||+.+++....+.       .|...|.+++|+|++++|++++.|++|++||+........  ...|..
T Consensus        91 l~s~s~D~~v~lwd~~~~~~~~~~~-------~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~  163 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTGTTYKRFV-------GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSD  163 (343)
T ss_dssp             EEEEETTSEEEEEETTSSCEEEEEE-------CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSS
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEEc-------CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCc
Confidence            9999999999999998877554443       3778999999999999999999999999999974332221  125666


Q ss_pred             cEEEEEecCCC----------CeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccE
Q 016257          156 SVLDMDFSLDS----------EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (392)
Q Consensus       156 ~i~~i~~~~~~----------~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~  225 (392)
                      .|.+++|+|++          .+|++++.|+.|++||. ..+....+..| ...|.+++|+|+++.     +++++.|+.
T Consensus       164 ~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h-~~~v~~~~~s~~g~~-----l~sgs~dg~  236 (343)
T 2xzm_R          164 WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAH-ESNVNHLSISPNGKY-----IATGGKDKK  236 (343)
T ss_dssp             CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECC-SSCEEEEEECTTSSE-----EEEEETTCE
T ss_pred             eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCc-cccceEEEECCCCCE-----EEEEcCCCe
Confidence            89999999987          68999999999999994 55666666655 458999999999997     899999999


Q ss_pred             EEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeee--eee----------ccccCcceEE
Q 016257          226 LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH--WSK----------RLHLGTSIAL  293 (392)
Q Consensus       226 i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~----------~~~~~~~i~~  293 (392)
                      |++||++..........+...|.+++|+|++.+++++ .|+.|++||+.+++...  .+.          .+| ...|.+
T Consensus       237 v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~  314 (343)
T 2xzm_R          237 LLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK-NPQCTS  314 (343)
T ss_dssp             EEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS-CCCEEE
T ss_pred             EEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC-CCceEE
Confidence            9999995443322223345679999999999988765 47789999998766433  221          146 678999


Q ss_pred             EEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257          294 VEFCPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       294 ~~~s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      ++|+|+|++|++|+.||.|++|++..+
T Consensus       315 ~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          315 LAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             EEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             EEECCCCCeEEEecCCceEEEEEEEcc
Confidence            999999999999999999999998753

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.2e-43  Score=315.24  Aligned_cols=292  Identities=12%  Similarity=0.132  Sum_probs=238.6

Q ss_pred             CCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe
Q 016257           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (392)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  131 (392)
                      .......+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++....+.       .|...|.+++|+|++++|++|+
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~-------~h~~~v~~~~~s~~g~~las~~  127 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK-------LHCPWVMECAFAPNGQSVACGG  127 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE-------CCCTTCCCCEECTTSSEEEECC
T ss_pred             eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEe-------cCCCCEEEEEECCCCCEEEEee
Confidence            345667899999999999999999999999999999999998876554443       2667899999999999999999


Q ss_pred             CCCcEEEEeCCCCc-------eeecccCCCCcEEEEEecCCC-CeEEEEcCCCcEEEEECCCCeeeEEEe----cCCCcc
Q 016257          132 VDGHLRIMHWPSLR-------IILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLT----RNSDEK  199 (392)
Q Consensus       132 ~dg~i~i~d~~~~~-------~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~----~~~~~~  199 (392)
                      .|+.+++|++.+..       ....+.+|.+.+.++.|+|++ ..|++++.|++|++||+++++.+..+.    ..+...
T Consensus       128 ~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~  207 (380)
T 3iz6_a          128 LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD  207 (380)
T ss_dssp             SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSC
T ss_pred             CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccC
Confidence            99999999986532       223456777789999999964 579999999999999999998887763    234557


Q ss_pred             eEEEEecC-CCCcceEEEEEEeCCccEEEEEeCC-CceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce
Q 016257          200 IELCRFSK-DGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (392)
Q Consensus       200 v~~~~~~~-~~~~~~~~~~~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  277 (392)
                      +.+++|++ ++..     +++++.|+.|++||++ ..+.+..+..|...|.+++|+|++++|++|+.||+|++||+++++
T Consensus       208 v~~~~~~~~~~~~-----l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~  282 (380)
T 3iz6_a          208 VLSLSINSLNANM-----FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH  282 (380)
T ss_dssp             EEEEEECSSSCCE-----EEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred             eEEEEeecCCCCE-----EEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc
Confidence            99999987 5554     7899999999999998 456777888999999999999999999999999999999999998


Q ss_pred             eeeeeecccc-----CcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccc------------ceeeeeeeeeeeeece
Q 016257          278 INHWSKRLHL-----GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWK------------EWQIYSLLLALFLASA  340 (392)
Q Consensus       278 ~~~~~~~~~~-----~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~------------~~~~~~~~~~~~~~~~  340 (392)
                      .+..+.....     ...|++++|+|+|++|++|+.||.|++||+.......            +..+.+.+     ...
T Consensus       283 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~-----dg~  357 (380)
T 3iz6_a          283 QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-----DGS  357 (380)
T ss_dssp             EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS-----SSS
T ss_pred             EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC-----CCC
Confidence            7766532110     2348999999999999999999999999986443221            22222222     345


Q ss_pred             EEEEeeecceeeeecccccc
Q 016257          341 VVFYIFFENSDSFWNFPVAR  360 (392)
Q Consensus       341 ~~~~~~~d~~i~~W~~~~~~  360 (392)
                      .+++++.|+.|++|++...+
T Consensus       358 ~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          358 ALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EEEEECTTSCEEEEECCSSS
T ss_pred             EEEEeeCCCCEEEEecCCCc
Confidence            77888899999999987554

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.7e-42  Score=301.48  Aligned_cols=324  Identities=12%  Similarity=0.117  Sum_probs=255.3

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .++|.+++|+|++.   +++.+....      .+..|...        .........+|.+.|++++|+|++++|++++ 
T Consensus         9 ~~~v~~~~~s~dg~---~~~~~~~~~------~~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-   70 (337)
T 1gxr_A            9 SKPAYSFHVTADGQ---MQPVPFPPD------ALIGPGIP--------RHARQINTLNHGEVVCAVTISNPTRHVYTGG-   70 (337)
T ss_dssp             EEECCEEEECSSSC---EEECCCCTT------SSSSTTCC--------SEEEEEEEECCSSCCCEEEECSSSSEEEEEC-
T ss_pred             CCceeEEEECCCCC---EEEeecCCC------cEeccccC--------CccccceeccCCCceEEEEEecCCcEEEEcC-
Confidence            56899999999984   455444322      12222111        2222334457999999999999999999998 


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc--eeecccCCCCcEEEEE
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKSVLDMD  161 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~i~  161 (392)
                      |+.|++|++.+.+.......  .....|...|.+++|+|++++|++++.|+.|++||+++++  ....+..+...|.+++
T Consensus        71 dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~  148 (337)
T 1gxr_A           71 KGCVKVWDISHPGNKSPVSQ--LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA  148 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEE--EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEE
T ss_pred             CCeEEEEECCCCCceeeeec--ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEE
Confidence            99999999987653322221  1112477899999999999999999999999999999877  4555666777899999


Q ss_pred             ecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec
Q 016257          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (392)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~  241 (392)
                      |+|+++++++++.|+.|++||+++++....+..+. ..+.+++|+|++..     +++++.|+.|++||+++++.+..+.
T Consensus       149 ~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~-----l~~~~~dg~i~~~d~~~~~~~~~~~  222 (337)
T 1gxr_A          149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT-DGASCIDISNDGTK-----LWTGGLDNTVRSWDLREGRQLQQHD  222 (337)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSE-----EEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc-CceEEEEECCCCCE-----EEEEecCCcEEEEECCCCceEeeec
Confidence            99999999999999999999999999888887654 47999999999987     7889999999999999988876654


Q ss_pred             ccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCc
Q 016257          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (392)
Q Consensus       242 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  321 (392)
                       +...+.+++|+|++++|++++.|+.|++||+++++....  ..| ...|.+++|+|++++|++++.||.|++|++....
T Consensus       223 -~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~  298 (337)
T 1gxr_A          223 -FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL--HLH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             -CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE--CCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             -CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE--cCC-ccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence             577899999999999999999999999999999876543  467 8899999999999999999999999999998665


Q ss_pred             cccceeeeeeeeee--eeeceEEEEeeecceeeeeccc
Q 016257          322 DWKEWQIYSLLLAL--FLASAVVFYIFFENSDSFWNFP  357 (392)
Q Consensus       322 ~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~W~~~  357 (392)
                      ..........+...  ......+++++.|+.|++|++.
T Consensus       299 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          299 SIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             EEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            43211111111111  1234467778899999999974

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.4e-42  Score=298.71  Aligned_cols=292  Identities=11%  Similarity=0.057  Sum_probs=221.9

Q ss_pred             ceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC
Q 016257           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (392)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (392)
                      .....+.+|.+.|.+++|+|+  +|++|+.|++|++|++..+.......   .....|...|.+++|+|++++|++|+.|
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~---~~~~~h~~~v~~v~~sp~~~~las~s~D   79 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDV---LDETAHKKAIRSVAWRPHTSLLAAGSFD   79 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEE---ECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred             ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEE---EecCCccCCEEEEEECCCCCEEEEEeCC
Confidence            345678899999999999987  99999999999999997653211110   1111378899999999999999999999


Q ss_pred             CcEEEEeCCC-------CceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCC----eeeEEEecCCCcceEE
Q 016257          134 GHLRIMHWPS-------LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG----VAWTFLTRNSDEKIEL  202 (392)
Q Consensus       134 g~i~i~d~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~~v~~  202 (392)
                      ++|++||++.       .+....+..|...|.+++|+|++++|++++.|++|++||++..    +++..+..| ...|.+
T Consensus        80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h-~~~v~~  158 (330)
T 2hes_X           80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH-SQDVKH  158 (330)
T ss_dssp             SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC-SSCEEE
T ss_pred             CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC-CCceEE
Confidence            9999999853       2345556778889999999999999999999999999999532    345555554 458999


Q ss_pred             EEecCCCCcceEEEEEEeCCccEEEEEeCCCc--eeeeeecccCCCcEEEEECCC--CCEEEEEeCCCcEEEEecCCc--
Q 016257          203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTW--NKIGHKRLLRKPASVLSISLD--GKYLAMGSKDGDICVVDVKKM--  276 (392)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~--  276 (392)
                      ++|+|++..     +++++.|+.|++||.+++  +++..+..|...|.+++|+|+  +.+|++++.|++|++||+.++  
T Consensus       159 v~~~p~~~~-----l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~  233 (330)
T 2hes_X          159 VIWHPSEAL-----LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE  233 (330)
T ss_dssp             EEECSSSSE-----EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT
T ss_pred             EEECCCCCE-----EEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc
Confidence            999999987     899999999999998765  567788899999999999998  779999999999999999765  


Q ss_pred             ------eeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceee-----eeeeeee-ee---eceE
Q 016257          277 ------EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI-----YSLLLAL-FL---ASAV  341 (392)
Q Consensus       277 ------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~~~~~~-~~---~~~~  341 (392)
                            .....+...| ...|.+++|++++ +|++++.||.|++|+............     ...+... +.   ....
T Consensus       234 ~~~~~~~~~~~~~~~h-~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~  311 (330)
T 2hes_X          234 DDQQEWVCEAILPDVH-KRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTI  311 (330)
T ss_dssp             TSCEEEEEEEECCSCC-SSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CC
T ss_pred             cccceeEEeeeccccc-ccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceE
Confidence                  2333333347 8899999999665 899999999999999875421000000     0011111 11   2346


Q ss_pred             EEEeeecceeeeecccc
Q 016257          342 VFYIFFENSDSFWNFPV  358 (392)
Q Consensus       342 ~~~~~~d~~i~~W~~~~  358 (392)
                      +++++.|+.|++|++..
T Consensus       312 las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          312 LATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEEETTSEEEEEEC--
T ss_pred             EEEecCCCcEEEEEecc
Confidence            78888999999999763

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=5.8e-42  Score=323.08  Aligned_cols=309  Identities=15%  Similarity=0.211  Sum_probs=253.8

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ..+|.+++|+|++.   .+++++.      ++.+++|+.+         ......+.+|...|.+++|+|+++.|++++.
T Consensus       262 ~~~v~~v~~~~d~~---~l~~~~~------d~~i~~w~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~  323 (577)
T 2ymu_A          262 SSSVNGVAFRPDGQ---TIASASD------DKTVKLWNRN---------GQLLQTLTGHSSSVWGVAFSPDGQTIASASD  323 (577)
T ss_dssp             SSCEEEEEECTTSS---EEEEEET------TSCEEEEETT---------SCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCEEEEEEcCCCC---EEEEEeC------CCEEEEEeCC---------CcEEEEEecCCCCeEEEEECCCCCEEEEEeC
Confidence            56899999999984   3554443      5668888743         2334567899999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      |+.|++||...... ..+       ..|...+.+++|+|++++|++++.|+.|++||. +++.+..+..|...|.+++|+
T Consensus       324 d~~i~~w~~~~~~~-~~~-------~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s  394 (577)
T 2ymu_A          324 DKTVKLWNRNGQHL-QTL-------TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS  394 (577)
T ss_dssp             TSCEEEEETTSCEE-EEE-------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEEC
T ss_pred             CCeEEEEeCCCCee-EEE-------eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEEC
Confidence            99999999765432 221       136789999999999999999999999999995 567777777888899999999


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeeccc
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~  243 (392)
                      |++++|++++.|+.|++||. +++.+..+..+. ..|.+++|+|+++.     +++++.|+.|++||.. ++.+..+..|
T Consensus       395 ~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~-~~v~~~~~s~d~~~-----l~~~~~d~~v~~w~~~-~~~~~~~~~~  466 (577)
T 2ymu_A          395 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS-SSVWGVAFSPDDQT-----IASASDDKTVKLWNRN-GQLLQTLTGH  466 (577)
T ss_dssp             TTSSCEEEEETTSEEEEECT-TCCEEEEEECCS-SCEEEEEECTTSSE-----EEEEETTSEEEEEETT-SCEEEEEECC
T ss_pred             CCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCC-CCeEEEEECCCCCE-----EEEEcCCCEEEEEECC-CCEEEEEcCC
Confidence            99999999999999999996 566777776654 57999999999997     7899999999999974 5677788889


Q ss_pred             CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCc--
Q 016257          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA--  321 (392)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--  321 (392)
                      ...|++++|+|++++|++++.|+.|++||. +++.+..+ .+| ...|++++|+|+|++|++++.||.|++|+.....  
T Consensus       467 ~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~-~~h-~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~  543 (577)
T 2ymu_A          467 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGH-SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ  543 (577)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE-ECC-SSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEE
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE-eCC-CCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEE
Confidence            999999999999999999999999999995 56666655 578 8999999999999999999999999999964211  


Q ss_pred             -----cccceeeeeeeeeeeeeceEEEEeeecceeeeec
Q 016257          322 -----DWKEWQIYSLLLALFLASAVVFYIFFENSDSFWN  355 (392)
Q Consensus       322 -----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~  355 (392)
                           .-.++.+.+.+     ....+++++.|++|++||
T Consensus       544 ~~~~h~~~v~~~~fs~-----dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          544 TLTGHSSSVWGVAFSP-----DGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEECCSSCEEEEEECT-----TSSCEEEEETTSCEEEEC
T ss_pred             EEcCCCCCEEEEEEcC-----CCCEEEEEeCCCEEEEeC
Confidence                 11122333332     334677888999999997

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.1e-41  Score=294.44  Aligned_cols=291  Identities=16%  Similarity=0.193  Sum_probs=237.5

Q ss_pred             CCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe
Q 016257           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (392)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  131 (392)
                      .......+.+|.+.|++++|+|++++|++++.|+.|++|++.+++....+.       .|...|.+++|+|++++|++++
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~~   84 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-------GHKLGISDVAWSSDSNLLVSAS   84 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-------CCSSCEEEEEECTTSSEEEEEE
T ss_pred             CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc-------cCCCceEEEEEcCCCCEEEEEC
Confidence            345667889999999999999999999999999999999998776544332       3678999999999999999999


Q ss_pred             CCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCc
Q 016257          132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (392)
Q Consensus       132 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (392)
                      .|+.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..+. ..+.+++|+|++..
T Consensus        85 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~  163 (312)
T 4ery_A           85 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS-DPVSAVHFNRDGSL  163 (312)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSE
T ss_pred             CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCC-CcEEEEEEcCCCCE
Confidence            99999999999999888888888899999999999999999999999999999999888887654 47999999999986


Q ss_pred             ceEEEEEEeCCccEEEEEeCCCceeeeeec-ccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcc
Q 016257          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS  290 (392)
Q Consensus       212 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  290 (392)
                           +++++.|+.|++||+++++.+..+. .+...+..++|+|++++|++++.|+.|++||+++++....+ ..| ...
T Consensus       164 -----l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~-~~~  236 (312)
T 4ery_A          164 -----IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY-TGH-KNE  236 (312)
T ss_dssp             -----EEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE-CSS-CCS
T ss_pred             -----EEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE-Eec-CCc
Confidence                 7899999999999999988776654 45568999999999999999999999999999999887766 344 332


Q ss_pred             ---eEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceee---eeeeeeeeeeceEEEEee--ecceeeeeccc
Q 016257          291 ---IALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI---YSLLLALFLASAVVFYIF--FENSDSFWNFP  357 (392)
Q Consensus       291 ---i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~d~~i~~W~~~  357 (392)
                         +......+++.+|++|+.||.|++|++...........   .............+++++  .|+.|++|+..
T Consensus       237 ~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             eEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence               22233346788999999999999999986543322210   011111112334555555  58999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.8e-41  Score=304.18  Aligned_cols=288  Identities=15%  Similarity=0.162  Sum_probs=230.3

Q ss_pred             CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCC-----------CCCCCCCeEEEEecCCCCEEEE
Q 016257           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP-----------PLQDAGPQKCLSFSVDGSRFAA  129 (392)
Q Consensus        61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~s~~~~~l~~  129 (392)
                      +|.+.|.+++|+|+|++|++|+ ++.+++|++.+++....+......           ...+...|.+++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999976 678999999887755443321100           0012335899999999999999


Q ss_pred             EeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecC-C
Q 016257          130 GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK-D  208 (392)
Q Consensus       130 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~  208 (392)
                      |+.|+.|++||+++++....+..|...|.+++|+|++++|++++.|++|++||+++++....+..  ...+.+++|+| +
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~  218 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI--EDGVTTVAVSPGD  218 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECSTT
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc--CCCcEEEEEECCC
Confidence            99999999999999998888888888999999999999999999999999999999988877763  34699999999 7


Q ss_pred             CCcceEEEEEEeCCccEEEEEeCCCceeeeee-------cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCcee---
Q 016257          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHK-------RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI---  278 (392)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~---  278 (392)
                      +..     +++++.|+.|++||+++++.+..+       ..|...|.+++|+|++++|++|+.|+.|++||+++...   
T Consensus       219 ~~~-----l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~  293 (393)
T 1erj_A          219 GKY-----IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD  293 (393)
T ss_dssp             CCE-----EEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred             CCE-----EEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccc
Confidence            776     789999999999999998776655       46788999999999999999999999999999976432   


Q ss_pred             ---------eeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccce--------eeeeeeeeee-eece
Q 016257          279 ---------NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEW--------QIYSLLLALF-LASA  340 (392)
Q Consensus       279 ---------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------~~~~~~~~~~-~~~~  340 (392)
                               ... ..+| ...|.+++|+|++++|++|+.|+.|++|++..+......        .+.+.....+ ....
T Consensus       294 ~~~~~~~~~~~~-~~~h-~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~  371 (393)
T 1erj_A          294 SKTPNSGTCEVT-YIGH-KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN  371 (393)
T ss_dssp             -------CEEEE-EECC-SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCE
T ss_pred             ccCCCCCcceEE-Eecc-cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCC
Confidence                     222 2578 889999999999999999999999999998765543222        1111110000 1235


Q ss_pred             EEEEeeecceeeeecccc
Q 016257          341 VVFYIFFENSDSFWNFPV  358 (392)
Q Consensus       341 ~~~~~~~d~~i~~W~~~~  358 (392)
                      .+++++.|+.|++|++..
T Consensus       372 ~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          372 VFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EEEEEETTSEEEEEEEEE
T ss_pred             EEEEECCCCcEEECcccc
Confidence            678888999999999864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=8.2e-41  Score=294.07  Aligned_cols=298  Identities=19%  Similarity=0.207  Sum_probs=240.6

Q ss_pred             ceEEEeeCCCCCeeEEEEcCC-CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC
Q 016257           54 LVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (392)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~sp~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  132 (392)
                      .+..+|+||.+.|++++|+|+ +++|++|+.|++|+|||+...+.........  ...|...|.+++|+|++++|++++.
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~--l~~h~~~V~~~~~s~dg~~l~s~~~  106 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRA--LRGHSHFVSDVVISSDGQFALSGSW  106 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEE--ECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEE--EeCCCCCEEEEEECCCCCEEEEEcc
Confidence            456679999999999999997 6799999999999999998765432221111  1237889999999999999999999


Q ss_pred             CCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcc
Q 016257          133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (392)
Q Consensus       133 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (392)
                      |+.|++|+............+...+..+.+++++++|++++.|+.+++||+............+...+..++|++++...
T Consensus       107 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  186 (340)
T 4aow_A          107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP  186 (340)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSC
T ss_pred             cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCc
Confidence            99999999999888777777778899999999999999999999999999987766555555556689999999987653


Q ss_pred             eEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceE
Q 016257          213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA  292 (392)
Q Consensus       213 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~  292 (392)
                      +   +++++.|+.|++||+++++.+..+..|...|++++|+|++++|++|+.||.|++||+++.+.+..+.  + ...|.
T Consensus       187 ~---~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~-~~~v~  260 (340)
T 4aow_A          187 I---IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD--G-GDIIN  260 (340)
T ss_dssp             E---EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--C-SSCEE
T ss_pred             E---EEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec--C-CceEE
Confidence            3   5788999999999999999999999999999999999999999999999999999999999887763  3 56899


Q ss_pred             EEEEeeCCCeEEEEeCCCeEEEEEeecCccccceee----------eeeee--eeeeeceEEEEeeecceeeeecccccc
Q 016257          293 LVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI----------YSLLL--ALFLASAVVFYIFFENSDSFWNFPVAR  360 (392)
Q Consensus       293 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----------~~~~~--~~~~~~~~~~~~~~d~~i~~W~~~~~~  360 (392)
                      ++.|+|++. +++++.|+.|++|+++..........          ...+.  ........+++++.|+.|++|++.+|.
T Consensus       261 ~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          261 ALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             eeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            999999876 45666799999999875432111100          00011  111234477888899999999999885

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-41  Score=307.22  Aligned_cols=327  Identities=14%  Similarity=0.131  Sum_probs=255.6

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEE----cCCCCccc--cCCceEEEee------CCCCCeeEEEEc
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSF----DPKTTSVY--TSPLVTYVFD------ESEGDPMTIAVN   72 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~----~~~~~~~~--~~~~~~~~~~------~h~~~v~~~~~s   72 (392)
                      ++|++++|+|++..  ++++|+.      ++.+++|.+    +.......  ........+.      +|.+.|++++|+
T Consensus        46 ~~v~~~~~s~~~~~--~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  117 (425)
T 1r5m_A           46 DNIVSSTWNPLDES--ILAYGEK------NSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS  117 (425)
T ss_dssp             SCCSEEEECSSCTT--EEEEEET------BTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEEC
T ss_pred             CceEEEEECCCCCc--EEEEecC------CceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEc
Confidence            68999999999852  4555544      677999999    53221000  0001111122      268899999999


Q ss_pred             CCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccC
Q 016257           73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (392)
Q Consensus        73 p~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  152 (392)
                      |++++|++++.|+.|++|| .+++....+.       .|...|.+++|+|++++|++++.|+.|++||+++++....+..
T Consensus       118 ~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  189 (425)
T 1r5m_A          118 HDGNSIVTGVENGELRLWN-KTGALLNVLN-------FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFEL  189 (425)
T ss_dssp             TTSSEEEEEETTSCEEEEE-TTSCEEEEEC-------CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred             CCCCEEEEEeCCCeEEEEe-CCCCeeeecc-------CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeec
Confidence            9999999999999999999 4443333222       3678999999999999999999999999999999988777666


Q ss_pred             CCCc---------------EEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEE
Q 016257          153 AHKS---------------VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (392)
Q Consensus       153 ~~~~---------------i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (392)
                      +...               +.++.|+|++ .+++++.|+.|++||+++++.+..+..+ ...+.+++|+|++..     +
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~-----l  262 (425)
T 1r5m_A          190 KETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGH-HGPISVLEFNDTNKL-----L  262 (425)
T ss_dssp             C---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCC-SSCEEEEEEETTTTE-----E
T ss_pred             cccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccC-CCceEEEEECCCCCE-----E
Confidence            6555               8999999975 5888999999999999999888887755 457999999999986     7


Q ss_pred             EEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEe
Q 016257          218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (392)
Q Consensus       218 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  297 (392)
                      ++++.|+.|++||+++++.+..+..|...+.+++|+|++ ++++++.|+.|++||+++++....+ ..| ...|.+++|+
T Consensus       263 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~-~~~-~~~i~~~~~s  339 (425)
T 1r5m_A          263 LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS-IVD-GVPIFAGRIS  339 (425)
T ss_dssp             EEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE-ECT-TCCEEEEEEC
T ss_pred             EEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec-ccC-CccEEEEEEc
Confidence            889999999999999998888888899999999999999 9999999999999999999988776 467 7899999999


Q ss_pred             eCCCeEEEEeCCCeEEEEEeecCc--------------------cccceeee--e-eeeeee--eeceEEEEeeecceee
Q 016257          298 PTQRVVLTASKEWGAMITKLTVPA--------------------DWKEWQIY--S-LLLALF--LASAVVFYIFFENSDS  352 (392)
Q Consensus       298 ~~~~~l~~~~~dg~i~iw~~~~~~--------------------~~~~~~~~--~-~~~~~~--~~~~~~~~~~~d~~i~  352 (392)
                      |++++|++++.||.|++|++....                    ........  . .+....  .....+++++.|+.|+
T Consensus       340 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  419 (425)
T 1r5m_A          340 QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGS  419 (425)
T ss_dssp             TTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCE
T ss_pred             CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEE
Confidence            999999999999999999998655                    11111110  0 111111  1334677888999999


Q ss_pred             eeccc
Q 016257          353 FWNFP  357 (392)
Q Consensus       353 ~W~~~  357 (392)
                      +|+++
T Consensus       420 iw~~~  424 (425)
T 1r5m_A          420 VVAIP  424 (425)
T ss_dssp             EEECC
T ss_pred             EEeec
Confidence            99975

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=6.6e-41  Score=298.38  Aligned_cols=290  Identities=14%  Similarity=0.179  Sum_probs=240.5

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ..+|++++|+|++.   ++++|+.      ++.|++|+++..      .......+.+|...|.+++|+|++++|++++.
T Consensus         8 ~~~i~~~~~s~~~~---~l~~~~~------d~~v~i~~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   72 (372)
T 1k8k_C            8 VEPISCHAWNKDRT---QIAICPN------NHEVHIYEKSGN------KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT   72 (372)
T ss_dssp             SSCCCEEEECTTSS---EEEEECS------SSEEEEEEEETT------EEEEEEEEECCSSCEEEEEEETTTTEEEEEET
T ss_pred             CCCeEEEEECCCCC---EEEEEeC------CCEEEEEeCCCC------cEEeeeeecCCCCcccEEEEeCCCCEEEEEcC
Confidence            57899999999984   4665544      677999998732      11255678899999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCce---eec-ccCCCCcEEE
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---ILD-EPKAHKSVLD  159 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---~~~-~~~~~~~i~~  159 (392)
                      |+.|++||+.+++.......     ..|...|.+++|+|++++|++++.|+.|++||++.++.   ... ...|...|.+
T Consensus        73 dg~i~vwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~  147 (372)
T 1k8k_C           73 DRNAYVWTLKGRTWKPTLVI-----LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS  147 (372)
T ss_dssp             TSCEEEEEEETTEEEEEEEC-----CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred             CCeEEEEECCCCeeeeeEEe-----ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeE
Confidence            99999999988764333221     23678999999999999999999999999999987762   222 3455678999


Q ss_pred             EEecCCCCeEEEEcCCCcEEEEECC------------------CCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeC
Q 016257          160 MDFSLDSEFLATTSTDGSARIWKTE------------------DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (392)
Q Consensus       160 i~~~~~~~~l~~~~~d~~i~vwd~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (392)
                      ++|+|++++|++++.|+.|++||++                  .++.+..+..+ ...+.+++|+|++..     +++++
T Consensus       148 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-----l~~~~  221 (372)
T 1k8k_C          148 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS-CGWVHGVCFSANGSR-----VAWVS  221 (372)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC-SSCEEEEEECSSSSE-----EEEEE
T ss_pred             EEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC-CCeEEEEEECCCCCE-----EEEEe
Confidence            9999999999999999999999954                  56677777644 457999999999986     78999


Q ss_pred             CccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCC--cee--e------------------
Q 016257          222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK--MEI--N------------------  279 (392)
Q Consensus       222 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~--~------------------  279 (392)
                      .|+.|++||+++++.+..+..+...+.+++|+|+++++++| .|+.|++|++.+  ++.  .                  
T Consensus       222 ~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (372)
T 1k8k_C          222 HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE  300 (372)
T ss_dssp             TTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHH
T ss_pred             CCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhh
Confidence            99999999999999999999999999999999999988888 899999999988  431  0                  


Q ss_pred             ------------------eeeeccccCcceEEEEEe-eCC---CeEEEEeCCCeEEEEEeecCc
Q 016257          280 ------------------HWSKRLHLGTSIALVEFC-PTQ---RVVLTASKEWGAMITKLTVPA  321 (392)
Q Consensus       280 ------------------~~~~~~~~~~~i~~~~~s-~~~---~~l~~~~~dg~i~iw~~~~~~  321 (392)
                                        ..+..+| ...|++++|. ++|   .+|++++.||.|++|++....
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          301 RFQNLDKKASSEGSAAAGAGLDSLH-KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             HHHHCCCCC---------CCCSSSS-SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             hhhhcccccccccCccccccccccc-cCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence                              2222478 8899999977 566   899999999999999997543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.1e-40  Score=290.90  Aligned_cols=286  Identities=14%  Similarity=0.131  Sum_probs=241.9

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ..+|++++|+|++.   ++++|+       ++.+++|+++.....   .........+|...|.+++|+|++++|++++.
T Consensus        51 ~~~v~~~~~~~~~~---~l~~~~-------dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  117 (337)
T 1gxr_A           51 GEVVCAVTISNPTR---HVYTGG-------KGCVKVWDISHPGNK---SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE  117 (337)
T ss_dssp             SSCCCEEEECSSSS---EEEEEC-------BSEEEEEETTSTTCC---SCSEEEECSCTTSBEEEEEECTTSSEEEEEES
T ss_pred             CCceEEEEEecCCc---EEEEcC-------CCeEEEEECCCCCce---eeeecccccCCCCcEEEEEEcCCCCEEEEEcC
Confidence            56899999999884   455332       567999998744311   22233333479999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      |+.|++||+.+.+........     .|...+.+++|+|++++|++++.|+.|++||+++++....+..|...|.+++|+
T Consensus       118 d~~i~~~d~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~  192 (337)
T 1gxr_A          118 ASTLSIWDLAAPTPRIKAELT-----SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS  192 (337)
T ss_dssp             SSEEEEEECCCC--EEEEEEE-----CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             CCcEEEEECCCCCcceeeecc-----cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEEC
Confidence            999999999887632222111     266789999999999999999999999999999998888888888899999999


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeeccc
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~  243 (392)
                      |++++|++++.|+.|++||+++++.+..+.  +...+.+++|+|++..     +++++.++.|++||+++.+.. .+..|
T Consensus       193 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~-----l~~~~~~~~i~~~~~~~~~~~-~~~~~  264 (337)
T 1gxr_A          193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEW-----LAVGMESSNVEVLHVNKPDKY-QLHLH  264 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTSSCEE-EECCC
T ss_pred             CCCCEEEEEecCCcEEEEECCCCceEeeec--CCCceEEEEECCCCCE-----EEEEcCCCcEEEEECCCCCeE-EEcCC
Confidence            999999999999999999999998887775  3457999999999987     788889999999999987654 56778


Q ss_pred             CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      ...+.+++|+|++++|++++.||.|++||+.+++.....  .| ...|.+++|+|++++|++++.||.|++|++.
T Consensus       265 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~--~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KE-SSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--EC-SSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             ccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe--cC-CCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            899999999999999999999999999999998877543  46 7899999999999999999999999999974

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.3e-40  Score=313.73  Aligned_cols=335  Identities=15%  Similarity=0.172  Sum_probs=262.6

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .++|++++|+|++..   +++|+.      ++.+++|+.+         ......+.+|...|.+++|+|+++.|++++.
T Consensus       221 ~~~v~~~~~s~dg~~---l~~~~~------d~~i~~w~~~---------~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~  282 (577)
T 2ymu_A          221 SSSVRGVAFSPDGQT---IASASD------DKTVKLWNRN---------GQLLQTLTGHSSSVNGVAFRPDGQTIASASD  282 (577)
T ss_dssp             SSCEEEEEECTTSSC---EEEEET------TSCEEEECTT---------SCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCEEEEEECCCCCE---EEEEeC------CCEEEEEeCC---------CCEEEEEecCCCCEEEEEEcCCCCEEEEEeC
Confidence            467999999999854   444443      5668888632         2344568899999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      |+.|++|+... +....+.       .|...|.+++|+|++++|++++.|+.|++||... +.+..+..+...+.+++|+
T Consensus       283 d~~i~~w~~~~-~~~~~~~-------~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s  353 (577)
T 2ymu_A          283 DKTVKLWNRNG-QLLQTLT-------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFS  353 (577)
T ss_dssp             TSCEEEEETTS-CEEEEEC-------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEEC
T ss_pred             CCEEEEEeCCC-cEEEEEe-------cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEEC
Confidence            99999999643 2222221       3678999999999999999999999999999765 4455667778899999999


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeeccc
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~  243 (392)
                      |++++|++++.|+.+++||. +++.+..+..+ ...|.+++|+|+++.     +++++.|+.|++||. +++.+..+..|
T Consensus       354 ~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~-~~~v~~~~~s~dg~~-----l~~~~~d~~v~~~~~-~~~~~~~~~~~  425 (577)
T 2ymu_A          354 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSSVRGVAFSPDGQT-----IASASDDKTVKLWNR-NGQLLQTLTGH  425 (577)
T ss_dssp             TTSSEEEEEETTSEEEEEET-TCCEEEEEECC-SSCEEEEEECTTSSC-----EEEEETTSEEEEECT-TCCEEEEEECC
T ss_pred             CCCCEEEEEeCCCEEEEEcC-CCCEEEEecCC-CCCeEEEEECCCCCE-----EEEEeCCCEEEEEeC-CCCEEEEecCC
Confidence            99999999999999999996 56777777665 457999999999997     789999999999996 45677788899


Q ss_pred             CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccc
Q 016257          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADW  323 (392)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  323 (392)
                      ...|++++|+|++++|++++.|+.|++||.. ++....+ ..| ...|++++|+|++++|++++.|+.|++|+.... ..
T Consensus       426 ~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~-~~~-~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~-~~  501 (577)
T 2ymu_A          426 SSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTL-TGH-SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-LL  501 (577)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEE-ECC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSC-EE
T ss_pred             CCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEE-cCC-CCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCC-EE
Confidence            9999999999999999999999999999975 4544444 578 889999999999999999999999999996422 11


Q ss_pred             c--------ceeeeeeeeeeeeeceEEEEeeecceeeeeccccccccc-CCCCcccccCCCCCccccce
Q 016257          324 K--------EWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVARNQH-GGPKIESILRDPQSSDDQNM  383 (392)
Q Consensus       324 ~--------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~  383 (392)
                      .        +..+.+.+     ....+++++.|+.|++||.. ++.+. ...+..++.....+.++..+
T Consensus       502 ~~~~~h~~~v~~l~~s~-----dg~~l~s~~~dg~v~lwd~~-~~~~~~~~~h~~~v~~~~fs~dg~~l  564 (577)
T 2ymu_A          502 QTLTGHSSSVRGVAFSP-----DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTI  564 (577)
T ss_dssp             EEEECCSSCEEEEEECT-----TSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred             EEEeCCCCCEEEEEEcC-----CCCEEEEEECcCEEEEEeCC-CCEEEEEcCCCCCEEEEEEcCCCCEE
Confidence            1        11222222     33467788889999999964 43322 22334445555444554444

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4e-40  Score=293.34  Aligned_cols=246  Identities=11%  Similarity=0.049  Sum_probs=214.4

Q ss_pred             eeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCc--cceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcE
Q 016257           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA--TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (392)
Q Consensus        59 ~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  136 (392)
                      +..|.++|++++|+|++++|++++.|+.|++||+.+++  ....+.       .|...|.+++|+|++++|++++.|+.|
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~~~~~dg~i   76 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-------EHNGQVTGVDWAPDSNRIVTCGTDRNA   76 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-------CCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec-------CCCCcccEEEEeCCCCEEEEEcCCCeE
Confidence            45689999999999999999999999999999999875  333332       377899999999999999999999999


Q ss_pred             EEEeCCCCceee--cccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee---eEEEecCCCcceEEEEecCCCCc
Q 016257          137 RIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEKIELCRFSKDGTK  211 (392)
Q Consensus       137 ~i~d~~~~~~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~  211 (392)
                      ++||+++++...  ....+...|.+++|+|++++|++++.|+.|++||++.++.   ...+...+...+.+++|+|++..
T Consensus        77 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  156 (372)
T 1k8k_C           77 YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL  156 (372)
T ss_dssp             EEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred             EEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence            999998876433  3456777999999999999999999999999999988763   34444555668999999999986


Q ss_pred             ceEEEEEEeCCccEEEEEeCC------------------CceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEec
Q 016257          212 PFLFCTVQRGDKALLAVYDIS------------------TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (392)
Q Consensus       212 ~~~~~~~~~~~d~~i~v~d~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  273 (392)
                           +++++.|+.|++||++                  .++.+..+..|...+.+++|+|++++|++++.|+.|++||+
T Consensus       157 -----l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  231 (372)
T 1k8k_C          157 -----LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA  231 (372)
T ss_dssp             -----EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred             -----EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence                 7889999999999953                  56777788888999999999999999999999999999999


Q ss_pred             CCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          274 KKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       274 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      ++++.+..+ ..| ...|.+++|+|++++|+++ .|+.|++|++..
T Consensus       232 ~~~~~~~~~-~~~-~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          232 DKKMAVATL-ASE-TLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             GGTTEEEEE-ECS-SCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CCCceeEEE-ccC-CCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            999888776 467 7899999999999988877 899999999987

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.5e-39  Score=286.02  Aligned_cols=291  Identities=12%  Similarity=0.150  Sum_probs=239.5

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .++|+|++|+|++.+  ++++|+.      |+.|++|++......   .......+.+|...|.+++|+|++++|++++.
T Consensus        38 ~~~V~~v~~sp~~~~--~l~S~s~------D~~i~vWd~~~~~~~---~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~  106 (340)
T 4aow_A           38 NGWVTQIATTPQFPD--MILSASR------DKTIIMWKLTRDETN---YGIPQRALRGHSHFVSDVVISSDGQFALSGSW  106 (340)
T ss_dssp             SSCEEEEEECTTCTT--EEEEEET------TSCEEEEEECCSSSC---SEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cCCEEEEEEeCCCCC--EEEEEcC------CCeEEEEECCCCCcc---cceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence            478999999998544  5666555      778999999754321   23455678999999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceee-cccCCCCcEEEEEe
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL-DEPKAHKSVLDMDF  162 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~i~~  162 (392)
                      |+.|++|+............       +...+....+++++++|++++.|+.+++||........ ....+...+..++|
T Consensus       107 d~~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~  179 (340)
T 4aow_A          107 DGTLRLWDLTTGTTTRRFVG-------HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF  179 (340)
T ss_dssp             TSEEEEEETTTTEEEEEEEC-------CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEE
T ss_pred             cccceEEeecccceeeeecC-------CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEE
Confidence            99999999877664433322       45678899999999999999999999999997665443 34556678999999


Q ss_pred             cCCC--CeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeee
Q 016257          163 SLDS--EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (392)
Q Consensus       163 ~~~~--~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~  240 (392)
                      ++++  .++++++.|+.|++||+++++....+..+. ..|.+++|+|+++.     +++++.|+.|++||+++.+.+..+
T Consensus       180 ~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~-~~v~~~~~s~~~~~-----l~s~s~Dg~i~iwd~~~~~~~~~~  253 (340)
T 4aow_A          180 SPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT-GYLNTVTVSPDGSL-----CASGGKDGQAMLWDLNEGKHLYTL  253 (340)
T ss_dssp             CSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSE-----EEEEETTCEEEEEETTTTEEEEEE
T ss_pred             ccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCC-CcEEEEEECCCCCE-----EEEEeCCCeEEEEEeccCceeeee
Confidence            8865  568899999999999999999988887654 48999999999997     789999999999999999888776


Q ss_pred             cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee--------ccccCcceEEEEEeeCCCeEEEEeCCCeE
Q 016257          241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK--------RLHLGTSIALVEFCPTQRVVLTASKEWGA  312 (392)
Q Consensus       241 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  312 (392)
                      .. ...+.++.|+|++.+++ ++.|+.|++||++++.....+.        ..| ...|++++|+|+|++|++|+.||.|
T Consensus       254 ~~-~~~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~Dg~v  330 (340)
T 4aow_A          254 DG-GDIINALCFSPNRYWLC-AATGPSIKIWDLEGKIIVDELKQEVISTSSKAE-PPQCTSLAWSADGQTLFAGYTDNLV  330 (340)
T ss_dssp             EC-SSCEEEEEECSSSSEEE-EEETTEEEEEETTTTEEEEEECCC-------CC-CCCEEEEEECTTSSEEEEEETTSCE
T ss_pred             cC-CceEEeeecCCCCceee-ccCCCEEEEEECCCCeEEEeccccceeeeccCC-CCCEEEEEECCCCCEEEEEeCCCEE
Confidence            65 46899999999886654 5569999999999877655432        356 7899999999999999999999999


Q ss_pred             EEEEeecCc
Q 016257          313 MITKLTVPA  321 (392)
Q Consensus       313 ~iw~~~~~~  321 (392)
                      +||++..+.
T Consensus       331 ~iW~~~tGt  339 (340)
T 4aow_A          331 RVWQVTIGT  339 (340)
T ss_dssp             EEEEEEC--
T ss_pred             EEEeCCCcC
Confidence            999998754

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.9e-40  Score=296.93  Aligned_cols=293  Identities=14%  Similarity=0.077  Sum_probs=240.7

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCC----C---C
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS----G---D   76 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~----~---~   76 (392)
                      .++|++++|+| .    ++++|+.      ++.|++|+++......  .......+.+|...|.+++|+|+    +   +
T Consensus        16 ~~~i~~~~~~~-~----~l~s~~~------dg~i~iw~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~   82 (397)
T 1sq9_A           16 DADIFSVSACN-S----FTVSCSG------DGYLKVWDNKLLDNEN--PKDKSYSHFVHKSGLHHVDVLQAIERDAFELC   82 (397)
T ss_dssp             SSCEEEEEECS-S----EEEEEET------TSEEEEEESBCCTTCC--GGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred             hcCeEEEEecC-C----eEEEEcC------CCEEEEEECCCccccc--CCCcceEEecCCCcEEEEEEecccccCCcccc
Confidence            56899999998 2    4554444      6789999987543211  22345667899999999999999    9   9


Q ss_pred             eEEEEeCCCeEEEEEEeCCcc-----ceeeccccCCCCCC--CCCeEEEEec----CCCCE-EEEEeCCCcEEEEeCCC-
Q 016257           77 DFVCSTTNGGCKLFEVYGGAT-----DINLLAKKMPPLQD--AGPQKCLSFS----VDGSR-FAAGGVDGHLRIMHWPS-  143 (392)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~-----~~~~~~~~~~~~~~--~~~v~~~~~s----~~~~~-l~~~~~dg~i~i~d~~~-  143 (392)
                      +|++++.|+.|++|++.+.+.     ...+....    .+  ...|.+++|+    |++++ |++++.||.|++||+++ 
T Consensus        83 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  158 (397)
T 1sq9_A           83 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLD----SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF  158 (397)
T ss_dssp             EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSC----TTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred             EEEEEcCCCCEEEEEccCCcccccccceeecccc----cccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcc
Confidence            999999999999999998775     22222100    01  4799999999    99999 99999999999999988 


Q ss_pred             -----Cceee-----cc-------cCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec---CC--CcceE
Q 016257          144 -----LRIIL-----DE-------PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---NS--DEKIE  201 (392)
Q Consensus       144 -----~~~~~-----~~-------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~---~~--~~~v~  201 (392)
                           ++.+.     .+       ..+...|.+++|+|++ ++++++.|+.|++||+++++.+..+..   +.  ...+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~  237 (397)
T 1sq9_A          159 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR  237 (397)
T ss_dssp             SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE
T ss_pred             ccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccc
Confidence                 55544     44       3356689999999999 999999999999999999999888876   40  45799


Q ss_pred             EEEecCCCCcceEEEEEEeCCc---cEEEEEeCCCceeeeeecc-------------cCCCcEEEEECCCCCEEEEEeCC
Q 016257          202 LCRFSKDGTKPFLFCTVQRGDK---ALLAVYDISTWNKIGHKRL-------------LRKPASVLSISLDGKYLAMGSKD  265 (392)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~d---~~i~v~d~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~d  265 (392)
                      +++|+|++..     +++++.|   +.|++||+++++.+..+..             |...|.+++|+|++++|++++.|
T Consensus       238 ~i~~~~~~~~-----l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  312 (397)
T 1sq9_A          238 SVKFSPQGSL-----LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD  312 (397)
T ss_dssp             EEEECSSTTE-----EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred             eEEECCCCCE-----EEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC
Confidence            9999999987     7888888   9999999999999888888             89999999999999999999999


Q ss_pred             CcEEEEecCCceeeeeee------cc--------------ccCcceEEEEEeeCC----------CeEEEEeCCCeEEEE
Q 016257          266 GDICVVDVKKMEINHWSK------RL--------------HLGTSIALVEFCPTQ----------RVVLTASKEWGAMIT  315 (392)
Q Consensus       266 g~i~iwd~~~~~~~~~~~------~~--------------~~~~~i~~~~~s~~~----------~~l~~~~~dg~i~iw  315 (392)
                      |.|++||+++++.+..+.      ..              | ...|++++|+|++          ++|++++.||.|++|
T Consensus       313 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw  391 (397)
T 1sq9_A          313 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA-EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF  391 (397)
T ss_dssp             SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS-SCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEE
T ss_pred             CeEEEEEcCCCceeEEEecccCcccchhhhhcccccccccc-CCceeEEEeccccccccccccccceEEEecCCCcEEEE
Confidence            999999999998887775      21              3 6789999999998          799999999999999


Q ss_pred             EeecC
Q 016257          316 KLTVP  320 (392)
Q Consensus       316 ~~~~~  320 (392)
                      ++..+
T Consensus       392 ~~~~g  396 (397)
T 1sq9_A          392 REAGG  396 (397)
T ss_dssp             EEEC-
T ss_pred             EcCCC
Confidence            99754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.7e-40  Score=285.17  Aligned_cols=251  Identities=13%  Similarity=0.104  Sum_probs=207.0

Q ss_pred             EEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCc--cceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEeC
Q 016257           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA--TDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGV  132 (392)
Q Consensus        57 ~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~  132 (392)
                      ..+.+|.+.|++++|+|+|++|++|+.|++|+|||+....  ....+       ..|.++|.+++|++  ++++|++|+.
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-------~gH~~~V~~v~~s~~~~g~~l~s~s~   75 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-------TGHEGPVWRVDWAHPKFGTILASCSY   75 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-------CCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-------ccccCCeEEEEecCCCcCCEEEEEcC
Confidence            3577999999999999999999999999999999997542  22222       14788999999986  4899999999


Q ss_pred             CCcEEEEeCCCCc--eeecccCCCCcEEEEEecCC--CCeEEEEcCCCcEEEEECCCCee--eEEEecCCCcceEEEEec
Q 016257          133 DGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFS  206 (392)
Q Consensus       133 dg~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~  206 (392)
                      |++|++||+++++  .+..+..|...|.+++|+|+  +.+|++++.|++|++||++++..  ...+.. +...|.+++|+
T Consensus        76 D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~-h~~~v~~~~~~  154 (297)
T 2pm7_B           76 DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA-HAIGVNSASWA  154 (297)
T ss_dssp             TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEEC-CSSCEEEEEEC
T ss_pred             CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeec-ccCccceEeec
Confidence            9999999998774  34445667779999999997  88999999999999999987632  234444 45579999999


Q ss_pred             CCC-------------CcceEEEEEEeCCccEEEEEeCCCce----eeeeecccCCCcEEEEECCCC---CEEEEEeCCC
Q 016257          207 KDG-------------TKPFLFCTVQRGDKALLAVYDISTWN----KIGHKRLLRKPASVLSISLDG---KYLAMGSKDG  266 (392)
Q Consensus       207 ~~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~----~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg  266 (392)
                      |++             ..     +++++.|+.|++||+++++    ....+..|...|.+++|+|++   .+|++++.|+
T Consensus       155 p~~~~~~~~~~~~~~~~~-----l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~  229 (297)
T 2pm7_B          155 PATIEEDGEHNGTKESRK-----FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR  229 (297)
T ss_dssp             CCC------------CCE-----EEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred             CCcccccccCCCCCCcce-----EEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC
Confidence            973             33     7999999999999998765    556778899999999999984   8999999999


Q ss_pred             cEEEEecCCce--ee-eee-eccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCc
Q 016257          267 DICVVDVKKME--IN-HWS-KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (392)
Q Consensus       267 ~i~iwd~~~~~--~~-~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  321 (392)
                      +|++||+++..  .. ..+ ...| ...|.+++|+|+|++|++++.||.|++|+.....
T Consensus       230 ~v~iWd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g  287 (297)
T 2pm7_B          230 TCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (297)
T ss_dssp             CEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred             cEEEEEeCCCCCccceeeeecccC-CCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCC
Confidence            99999998743  11 111 1356 7889999999999999999999999999987543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-39  Score=290.00  Aligned_cols=283  Identities=14%  Similarity=0.090  Sum_probs=242.6

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .++|++++|+|++.   ++++|+.      ++.|++|++.        .......+.+|.+.|.+++|+|++++|++++.
T Consensus        32 ~~~v~~~~~s~~~~---~l~~~~~------dg~i~vwd~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~   94 (369)
T 3zwl_B           32 ERPLTQVKYNKEGD---LLFSCSK------DSSASVWYSL--------NGERLGTLDGHTGTIWSIDVDCFTKYCVTGSA   94 (369)
T ss_dssp             SSCEEEEEECTTSC---EEEEEES------SSCEEEEETT--------TCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             eceEEEEEEcCCCC---EEEEEeC------CCEEEEEeCC--------CchhhhhhhhcCCcEEEEEEcCCCCEEEEEeC
Confidence            46899999999884   4555544      6679999876        34556678899999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCce-----------e
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWPSLRI-----------I  147 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~-----------~  147 (392)
                      |+.|++||+.+++....+.        +...+.+++|+|++++|++++.+     +.|++||+.....           .
T Consensus        95 dg~i~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~  166 (369)
T 3zwl_B           95 DYSIKLWDVSNGQCVATWK--------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI  166 (369)
T ss_dssp             TTEEEEEETTTCCEEEEEE--------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred             CCeEEEEECCCCcEEEEee--------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence            9999999998877544432        45789999999999999999998     9999999876532           2


Q ss_pred             ecccCCCC--cEEEEEecCCCCeEEEEcCCCcEEEEECCC-CeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCcc
Q 016257          148 LDEPKAHK--SVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (392)
Q Consensus       148 ~~~~~~~~--~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~  224 (392)
                      .....+..  .+.+++|+|++++|++++.||.|++||+++ .+....+..+ ...+.+++|+|++..     +++++.|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-----l~~~~~d~  240 (369)
T 3zwl_B          167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH-EKSISDMQFSPDLTY-----FITSSRDT  240 (369)
T ss_dssp             EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC-SSCEEEEEECTTSSE-----EEEEETTS
T ss_pred             eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC-CCceeEEEECCCCCE-----EEEecCCc
Confidence            22333444  899999999999999999999999999998 6777777655 457999999999987     78899999


Q ss_pred             EEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCC--------------cEEEEecCCceeeeeeeccccCcc
Q 016257          225 LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG--------------DICVVDVKKMEINHWSKRLHLGTS  290 (392)
Q Consensus       225 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~  290 (392)
                      .|++||+++++.+..+. +...+..++|+|+++++++++.++              .+++||..+++....+ ..| ...
T Consensus       241 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~-~~~  317 (369)
T 3zwl_B          241 NSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV-QGH-FGP  317 (369)
T ss_dssp             EEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE-ECC-SSC
T ss_pred             eEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe-ecc-cCc
Confidence            99999999988877766 678899999999999999999888              8999999999988776 578 899


Q ss_pred             eEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257          291 IALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       291 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      |++++|+|++++|++++.||.|++|++...
T Consensus       318 v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          318 LNTVAISPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence            999999999999999999999999999854

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=7.7e-40  Score=314.78  Aligned_cols=289  Identities=11%  Similarity=0.129  Sum_probs=237.5

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .++|+|++|+|++.+  ++++|+.      |+.|++|.+......   .......+.+|...|.+++|+|++++|++|+.
T Consensus       382 ~~~V~~v~~~~~~~~--~l~s~s~------D~~i~~W~~~~~~~~---~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~  450 (694)
T 3dm0_A          382 TDMVTAIATPIDNAD--IIVSASR------DKSIILWKLTKDDKA---YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW  450 (694)
T ss_dssp             SSCEEEEECCTTCCS--EEEEEET------TSEEEEEECCCSTTC---SCEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             CceeEEEEecCCCCC--EEEEEeC------CCcEEEEEccCCCcc---cccccceecCCCCcEEEEEECCCCCEEEEEeC
Confidence            468999999997654  5665555      778999998754321   23445678999999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecc---cCCCCcEEEE
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE---PKAHKSVLDM  160 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~i  160 (392)
                      |++|+|||+.++.....+.       .|...|.+++|+|++++|++++.|++|++||..........   ..|...|.++
T Consensus       451 Dg~v~vwd~~~~~~~~~~~-------~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~  523 (694)
T 3dm0_A          451 DGELRLWDLAAGVSTRRFV-------GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCV  523 (694)
T ss_dssp             TSEEEEEETTTTEEEEEEE-------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEE
T ss_pred             CCcEEEEECCCCcceeEEe-------CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEE
Confidence            9999999998876554443       37889999999999999999999999999998654332221   3456689999


Q ss_pred             EecCCC--CeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeee
Q 016257          161 DFSLDS--EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG  238 (392)
Q Consensus       161 ~~~~~~--~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~  238 (392)
                      +|+|++  ..+++++.|++|++||+++++....+..|. ..|.+++|+|++..     +++++.|+.|++||+++++.+.
T Consensus       524 ~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~-~~v~~v~~spdg~~-----l~sg~~Dg~i~iwd~~~~~~~~  597 (694)
T 3dm0_A          524 RFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT-GYVSTVAVSPDGSL-----CASGGKDGVVLLWDLAEGKKLY  597 (694)
T ss_dssp             EECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSE-----EEEEETTSBCEEEETTTTEEEE
T ss_pred             EEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC-CCEEEEEEeCCCCE-----EEEEeCCCeEEEEECCCCceEE
Confidence            999986  579999999999999999998888887664 47999999999997     8999999999999999998877


Q ss_pred             eecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecccc-----------------CcceEEEEEeeCCC
Q 016257          239 HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL-----------------GTSIALVEFCPTQR  301 (392)
Q Consensus       239 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~i~~~~~s~~~~  301 (392)
                      .+.. ...+.+++|+|++.++++++ ++.|++||+++++.+..+.....                 ...+++++|+|+|+
T Consensus       598 ~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~  675 (694)
T 3dm0_A          598 SLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGS  675 (694)
T ss_dssp             CCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSS
T ss_pred             EecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCC
Confidence            6654 56799999999999888876 55699999999887665421100                 12378999999999


Q ss_pred             eEEEEeCCCeEEEEEee
Q 016257          302 VVLTASKEWGAMITKLT  318 (392)
Q Consensus       302 ~l~~~~~dg~i~iw~~~  318 (392)
                      +|++|+.||.|++|++.
T Consensus       676 ~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          676 TLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEEEETTSEEEEEEC-
T ss_pred             EEEEEcCCCeEEEEecc
Confidence            99999999999999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.8e-41  Score=304.40  Aligned_cols=320  Identities=13%  Similarity=0.101  Sum_probs=246.1

Q ss_pred             eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 016257            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (392)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~   86 (392)
                      +++++|+|++..   +++|+.      ++.+++|++....        ....+..| ..+....|+|++++|++++.|+.
T Consensus        59 ~~~~~~s~~g~~---l~~~~~------d~~v~i~d~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~  120 (420)
T 3vl1_A           59 GKGNTFEKVGSH---LYKARL------DGHDFLFNTIIRD--------GSKMLKRA-DYTAVDTAKLQMRRFILGTTEGD  120 (420)
T ss_dssp             CTTCEEEEEETT---EEEEEE------TTEEEEEECCSEE--------TTTTSCSC-CEEEEEEECSSSCEEEEEETTSC
T ss_pred             ccceeeeecCCe---EEEEEc------CCcEEEEEecccc--------eeeEEecC-CceEEEEEecCCCEEEEEECCCC
Confidence            457899999865   444333      6678899876321        11223344 44556678999999999999999


Q ss_pred             EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCC
Q 016257           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS  166 (392)
Q Consensus        87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~  166 (392)
                      |++||+.+++....+.       .|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|+|++
T Consensus       121 i~iwd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~  193 (420)
T 3vl1_A          121 IKVLDSNFNLQREIDQ-------AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG  193 (420)
T ss_dssp             EEEECTTSCEEEEETT-------SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT
T ss_pred             EEEEeCCCcceeeecc-------cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC
Confidence            9999988765432221       378899999999999999999999999999999998888888888899999999999


Q ss_pred             CeEEEEcCCCcEEEEECCCCeeeEEEecC--CCcce---------------------EEEEecCCCCcceEEEEEEeCCc
Q 016257          167 EFLATTSTDGSARIWKTEDGVAWTFLTRN--SDEKI---------------------ELCRFSKDGTKPFLFCTVQRGDK  223 (392)
Q Consensus       167 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~~v---------------------~~~~~~~~~~~~~~~~~~~~~~d  223 (392)
                      ++|++++.|+.|++||+++++.+..+..+  +...+                     .+++|+|++..     +++++.|
T Consensus       194 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-----l~~~~~d  268 (420)
T 3vl1_A          194 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY-----VIAGHVS  268 (420)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE-----EEEEETT
T ss_pred             CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE-----EEEEcCC
Confidence            99999999999999999999998888643  22234                     44555777776     7889999


Q ss_pred             cEEEEEeCCCceeeeeec-ccCCCcEEEEECCCCC-EEEEEeCCCcEEEEecCCcee-eeeeeccccCcceEEEEEeeCC
Q 016257          224 ALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKKMEI-NHWSKRLHLGTSIALVEFCPTQ  300 (392)
Q Consensus       224 ~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s~~~  300 (392)
                      +.|++||+++++.+..+. .|...+.+++|+|++. +|++|+.||.|++||+++++. ...+...| ...|.++.| +++
T Consensus       269 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~-~~~  346 (420)
T 3vl1_A          269 GVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE-GTPINNVYF-AAG  346 (420)
T ss_dssp             SCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST-TSCEEEEEE-ETT
T ss_pred             CeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC-CCCceEEEe-CCC
Confidence            999999999988766654 4678999999999998 999999999999999998754 44443335 778888855 588


Q ss_pred             CeEEEEeCCCeEEEEEeecCcccccee------ee------eeeeeeeeece---EEEEeeecceeeeecccc
Q 016257          301 RVVLTASKEWGAMITKLTVPADWKEWQ------IY------SLLLALFLASA---VVFYIFFENSDSFWNFPV  358 (392)
Q Consensus       301 ~~l~~~~~dg~i~iw~~~~~~~~~~~~------~~------~~~~~~~~~~~---~~~~~~~d~~i~~W~~~~  358 (392)
                      ++|++++.||.|++|++..+.......      ..      ...........   .+++++.++.+.+|++..
T Consensus       347 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          347 ALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             EEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             CEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            899999999999999998643221100      00      00011111222   577888899999999763

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.9e-40  Score=297.00  Aligned_cols=289  Identities=11%  Similarity=0.093  Sum_probs=237.4

Q ss_pred             eEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCc------cceeeccccCCCCCCCCCeEEEEecCC----C
Q 016257           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA------TDINLLAKKMPPLQDAGPQKCLSFSVD----G  124 (392)
Q Consensus        55 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~s~~----~  124 (392)
                      ....+.+|.+.|++++|+|  ++|++++.||.|++|++.+.+      ....+.       .|...|.+++|+|+    +
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~g   78 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-------VHKSGLHHVDVLQAIERDA   78 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-------CCTTCEEEEEEEEEEETTT
T ss_pred             hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEe-------cCCCcEEEEEEecccccCC
Confidence            4456789999999999998  799999999999999998876      222222       37789999999999    9


Q ss_pred             ---CEEEEEeCCCcEEEEeCCCCce-----eecccCC-----CCcEEEEEec----CCCCe-EEEEcCCCcEEEEECCC-
Q 016257          125 ---SRFAAGGVDGHLRIMHWPSLRI-----ILDEPKA-----HKSVLDMDFS----LDSEF-LATTSTDGSARIWKTED-  185 (392)
Q Consensus       125 ---~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~-----~~~i~~i~~~----~~~~~-l~~~~~d~~i~vwd~~~-  185 (392)
                         ++|++++.|+.|++|++.+++.     ...+..+     ...|.+++|+    |++++ |++++.|+.|++||+++ 
T Consensus        79 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  158 (397)
T 1sq9_A           79 FELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF  158 (397)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred             ccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcc
Confidence               9999999999999999988876     6666666     4789999999    99999 99999999999999998 


Q ss_pred             -----CeeeE-----EEe------cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc---c---
Q 016257          186 -----GVAWT-----FLT------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL---L---  243 (392)
Q Consensus       186 -----~~~~~-----~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~---~---  243 (392)
                           ++.+.     .+.      ..+...+.+++|+|++ .     +++++.|+.|++||+++++.+..+..   |   
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~-----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~  232 (397)
T 1sq9_A          159 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L-----IATGFNNGTVQISELSTLRPLYNFESQHSMINN  232 (397)
T ss_dssp             SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E-----EEEECTTSEEEEEETTTTEEEEEEECCC---CC
T ss_pred             ccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e-----EEEEeCCCcEEEEECCCCceeEEEecccccccc
Confidence                 66655     664      2345579999999999 6     79999999999999999999888888   8   


Q ss_pred             CCCcEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeecc-------------ccCcceEEEEEeeCCCeEEEEe
Q 016257          244 RKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRL-------------HLGTSIALVEFCPTQRVVLTAS  307 (392)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~-------------~~~~~i~~~~~s~~~~~l~~~~  307 (392)
                      ...+.+++|+|++++|++++.|   +.|++||+++++.+..+. .             | ...|.+++|+|++++|++++
T Consensus       233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~  310 (397)
T 1sq9_A          233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS-VPTHSSQASLGEFAH-SSWVMSLSFNDSGETLCSAG  310 (397)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC-BC--------CCBSB-SSCEEEEEECSSSSEEEEEE
T ss_pred             CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceec-cCccccccccccccc-CCcEEEEEECCCCCEEEEEe
Confidence            8999999999999999999999   999999999998877763 4             7 88999999999999999999


Q ss_pred             CCCeEEEEEeecCcccccee------e----------------eeeeeee-eeec-----------eEEEEeeecceeee
Q 016257          308 KEWGAMITKLTVPADWKEWQ------I----------------YSLLLAL-FLAS-----------AVVFYIFFENSDSF  353 (392)
Q Consensus       308 ~dg~i~iw~~~~~~~~~~~~------~----------------~~~~~~~-~~~~-----------~~~~~~~~d~~i~~  353 (392)
                      .||.|++|++........+.      .                ...+... +...           ..+++++.|+.|++
T Consensus       311 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~i  390 (397)
T 1sq9_A          311 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW  390 (397)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred             CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEE
Confidence            99999999997654433332      0                1111122 2222           47888889999999


Q ss_pred             ecccccc
Q 016257          354 WNFPVAR  360 (392)
Q Consensus       354 W~~~~~~  360 (392)
                      |++.+|+
T Consensus       391 w~~~~g~  397 (397)
T 1sq9_A          391 FREAGGK  397 (397)
T ss_dssp             EEEEC--
T ss_pred             EEcCCCC
Confidence            9998763

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.5e-41  Score=307.50  Aligned_cols=292  Identities=16%  Similarity=0.179  Sum_probs=226.8

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC-CCCeEEEEe
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST   82 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~~~~   82 (392)
                      ...|+|++|+|....  ++++|+.      ++.|++|+++..      .......+.+|.+.|++++|+| ++++|++++
T Consensus       119 ~~~V~~l~~~P~~~~--~lasGs~------dg~i~lWd~~~~------~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s  184 (435)
T 4e54_B          119 DRRATSLAWHPTHPS--TVAVGSK------GGDIMLWNFGIK------DKPTFIKGIGAGGSITGLKFNPLNTNQFYASS  184 (435)
T ss_dssp             SSCEEEEEECSSCTT--CEEEEET------TSCEEEECSSCC------SCCEEECCCSSSCCCCEEEECSSCTTEEEEEC
T ss_pred             CCCEEEEEEeCCCCC--EEEEEeC------CCEEEEEECCCC------CceeEEEccCCCCCEEEEEEeCCCCCEEEEEe
Confidence            346999999996554  5676655      677999987643      2233455778999999999998 688999999


Q ss_pred             CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (392)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~  162 (392)
                      .|++|++||+++..... +...    ..+...+.+++|+|++++|++|+.||.|++||++. +.+..+..|...|.+++|
T Consensus       185 ~D~~v~iwd~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~  258 (435)
T 4e54_B          185 MEGTTRLQDFKGNILRV-FASS----DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVAL  258 (435)
T ss_dssp             SSSCEEEEETTSCEEEE-EECC----SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEE
T ss_pred             CCCEEEEeeccCCceeE-Eecc----CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeee
Confidence            99999999987654321 1111    12345678999999999999999999999999864 555677788889999999


Q ss_pred             cCCCC-eEEEEcCCCcEEEEECCCCeeeEEEe--cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeee
Q 016257          163 SLDSE-FLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (392)
Q Consensus       163 ~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~  239 (392)
                      +|+++ +|++++.|+.|++||+++.+....+.  ..|...|.+++|+|++..     +++++.|+.|++||+++++....
T Consensus       259 ~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~-----l~s~~~D~~i~iwd~~~~~~~~~  333 (435)
T 4e54_B          259 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR-----LLTTDQKSEIRVYSASQWDCPLG  333 (435)
T ss_dssp             CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSE-----EEEEESSSCEEEEESSSSSSEEE
T ss_pred             cCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCe-----eEEEcCCCEEEEEECCCCccceE
Confidence            99876 67899999999999998876544432  234568999999999997     89999999999999998877665


Q ss_pred             ecccCC------CcEEEEECCCCCEEEEEe------------CCCcEEEEecCCceeeeeeeccccCcceEEE-EEeeCC
Q 016257          240 KRLLRK------PASVLSISLDGKYLAMGS------------KDGDICVVDVKKMEINHWSKRLHLGTSIALV-EFCPTQ  300 (392)
Q Consensus       240 ~~~~~~------~v~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~-~~s~~~  300 (392)
                      +..|..      .+....|+|++.+++++.            .++.|++||..+++.+..+...| ...|.++ +|+|+|
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~s~~~fspdg  412 (435)
T 4e54_B          334 LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGISSLNEFNPMG  412 (435)
T ss_dssp             ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCCCEEEECTTS
T ss_pred             EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEEEEEEECCCC
Confidence            554432      233456777777776654            23579999999999888776677 7788887 699999


Q ss_pred             CeEEEEeCCCeEEEEEeecCcc
Q 016257          301 RVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       301 ~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                      ++|++|+ |+.|+||+++.++.
T Consensus       413 ~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          413 DTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             SCEEEEC-SSEEEECCCC----
T ss_pred             CEEEEEc-CCcEEEEECCcCee
Confidence            9999876 78999999986543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.3e-41  Score=301.09  Aligned_cols=244  Identities=13%  Similarity=0.123  Sum_probs=192.0

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .++|+|++|+|++   .++++|+.      ++.|++|+++...      ......+.+|.+.|.+++|+|++++|++++.
T Consensus        11 ~~~v~~~~~s~~g---~~l~~~~~------d~~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~   75 (377)
T 3dwl_C           11 PKPSYEHAFNSQR---TEFVTTTA------TNQVELYEQDGNG------WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ   75 (377)
T ss_dssp             SSCCSCCEECSSS---SEEECCCS------SSCBCEEEEETTE------EEECCCBCCCSSCEEEEEECTTTCCEEEEET
T ss_pred             CCcEEEEEECCCC---CEEEEecC------CCEEEEEEccCCc------eEEEEEEecCCceEEEEEEeCCCCEEEEEeC
Confidence            5789999999988   45776554      6779999997321      1344567899999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCce---eecccC-CCCcEEE
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---ILDEPK-AHKSVLD  159 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~-~~~~i~~  159 (392)
                      |+.|++||+.+++.....    .....|...|.+++|+|++++|++++.|+.|++||+++++.   ...+.. |...|.+
T Consensus        76 d~~v~vwd~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~  151 (377)
T 3dwl_C           76 DRNAYVYEKRPDGTWKQT----LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILS  151 (377)
T ss_dssp             TSSEEEC------CCCCE----EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEE
T ss_pred             CCeEEEEEcCCCCceeee----eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEE
Confidence            999999999887611111    11124788999999999999999999999999999988763   455555 7779999


Q ss_pred             EEecCCCCeEEEEcCCCcEEEEECCC------------------CeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeC
Q 016257          160 MDFSLDSEFLATTSTDGSARIWKTED------------------GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (392)
Q Consensus       160 i~~~~~~~~l~~~~~d~~i~vwd~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (392)
                      ++|+|++++|++++.|+.|++||++.                  ++.+..+  .+...|.+++|+|+++.     +++++
T Consensus       152 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~-----l~~~~  224 (377)
T 3dwl_C          152 LDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNA-----LAYAG  224 (377)
T ss_dssp             EEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSC-----EEEEE
T ss_pred             EEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCE-----EEEEe
Confidence            99999999999999999999999852                  3444445  45668999999999997     79999


Q ss_pred             CccEEEEEeCCCcee----eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecC
Q 016257          222 DKALLAVYDISTWNK----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (392)
Q Consensus       222 ~d~~i~v~d~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  274 (392)
                      .|+.|++||+++++.    +..+..|...|.+++|+|++++|++++.++.+ +|+..
T Consensus       225 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          225 HDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             TTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            999999999999887    77888899999999999999999998866644 77665

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-41  Score=310.43  Aligned_cols=342  Identities=11%  Similarity=0.081  Sum_probs=239.6

Q ss_pred             CCceeeeecCCCCCc------ceeEEEeCCCCC-------------CCCCcCceeEEEEcCCCCccccCCceEEEeeCCC
Q 016257            3 GGGTVTCGSWIKRPE------NVNLVVLGKSSR-------------ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE   63 (392)
Q Consensus         3 ~~~~v~~~~w~~~~~------~~~~~~~g~~~~-------------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~   63 (392)
                      .+++|++|+|+|++.      ...++|+|....             .++.++.|+||+++....    .......+.+|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~----~~~~~~~l~~~~  207 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTL----HCVKVQTIVHSF  207 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTC----CEEEEEEEEECC
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCC----CceEEEEEEecC
Confidence            368999999999861      113555544221             134688999999975321    111234567888


Q ss_pred             CCeeEEEEcCC------CCeEEEEeCCCeEEEEEEeCCcccee----eccccCCCCCCCCCeEEEEecCCCCEEEEEeCC
Q 016257           64 GDPMTIAVNPS------GDDFVCSTTNGGCKLFEVYGGATDIN----LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (392)
Q Consensus        64 ~~v~~~~~sp~------~~~l~~~~~d~~i~iw~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (392)
                      +.|.+++|+|+      +.+||+++.||+|++||+..+.....    ..........|...|.+++|++++ .|++|+.|
T Consensus       208 ~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~D  286 (524)
T 2j04_B          208 GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKN  286 (524)
T ss_dssp             CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETT
T ss_pred             CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCC
Confidence            99999999997      57999999999999999976643210    000000112367899999999865 89999999


Q ss_pred             CcEEEEeCCCCce-eecccCCCCcEEEE--EecCCC-CeEEEEcCCCcEEEEECCCCeeeEEEecCCC-cceEEEEecCC
Q 016257          134 GHLRIMHWPSLRI-ILDEPKAHKSVLDM--DFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSD-EKIELCRFSKD  208 (392)
Q Consensus       134 g~i~i~d~~~~~~-~~~~~~~~~~i~~i--~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~  208 (392)
                      |+|++||+++++. ...+..|...|.++  .|+|++ .+|++++.|++|++||++++++...+..+.. ..+.+++|+|+
T Consensus       287 gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~  366 (524)
T 2j04_B          287 GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQ  366 (524)
T ss_dssp             SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETT
T ss_pred             CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCC
Confidence            9999999987643 33466788899999  578887 8999999999999999999887777665543 24789999999


Q ss_pred             CCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec---c
Q 016257          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR---L  285 (392)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~  285 (392)
                      +..     +++++.|+.|++||++++..+..+..|...|++++|+|+|++|++|+.||+|++||+... .......   .
T Consensus       367 ~~~-----l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~  440 (524)
T 2j04_B          367 IYS-----YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSAT  440 (524)
T ss_dssp             TTE-----EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------
T ss_pred             cCe-----EEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccc
Confidence            886     788899999999999998887788889999999999999999999999999999998654 2211100   1


Q ss_pred             ccCcceEEEEEeeCCCeEEEEeCCCeE--------EEEEeecCccccceeeeeeeeeeeeeceEEEEeeecceeeeeccc
Q 016257          286 HLGTSIALVEFCPTQRVVLTASKEWGA--------MITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFP  357 (392)
Q Consensus       286 ~~~~~i~~~~~s~~~~~l~~~~~dg~i--------~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~  357 (392)
                      +....+.+++|+|+++.+.. ..+..+        .+-.+.. ....++.+.+.+.+.  ....+++++.+|.|+||++.
T Consensus       441 ~~~~~v~~v~~sp~g~~~~~-~~~~~~~~~~~~g~~~~~l~g-h~~~V~~Vafsp~~~--~~~~lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          441 QKSLRLWKWDYSIKDDKYRI-DSSYEVYPLTVNDVSKAKIDA-HGINITCTKWNETSA--GGKCYAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             CCCCEEEECBCCSSSCEEEE-CCCCCCCC--------------CCCSCCCEEECCSTT--TTTEEEEECTTSEEEEEECS
T ss_pred             eeeeEEEEeccCCCCCeEEc-cCCceecccccCCcceeeecC-CCceEEEEECCCCCC--ccHHHHhhccCceEEEEEcc
Confidence            11225678888888875432 221111        1222332 233566776666542  13355666678888888886


Q ss_pred             cc
Q 016257          358 VA  359 (392)
Q Consensus       358 ~~  359 (392)
                      ..
T Consensus       517 ~~  518 (524)
T 2j04_B          517 LE  518 (524)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.8e-40  Score=291.10  Aligned_cols=289  Identities=9%  Similarity=0.103  Sum_probs=230.8

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCC---CCeEEE
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS---GDDFVC   80 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~---~~~l~~   80 (392)
                      ..+|++++|+|++.+  ++++|+..   ..++.+++|+++...       .......+|...|.+++|+|+   +++|++
T Consensus        18 ~~~v~~~~~~p~~~~--l~~~~s~~---~~d~~v~iw~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~   85 (357)
T 3i2n_A           18 NYTVFDCKWVPCSAK--FVTMGNFA---RGTGVIQLYEIQHGD-------LKLLREIEKAKPIKCGTFGATSLQQRYLAT   85 (357)
T ss_dssp             SSCEEEEEECTTSSE--EEEEEC-----CCCEEEEEEEECSSS-------EEEEEEEEESSCEEEEECTTCCTTTCCEEE
T ss_pred             CCceEEEEEcCCCce--EEEecCcc---CCCcEEEEEeCCCCc-------ccceeeecccCcEEEEEEcCCCCCCceEEE
Confidence            468999999998865  55555431   126789999987321       122223478999999999998   699999


Q ss_pred             EeCCCeEEEEEEeCCc-cceeeccccCCCCCCCCCeEEEE------ecCCCCEEEEEeCCCcEEEEeCCCCc-eeecccC
Q 016257           81 STTNGGCKLFEVYGGA-TDINLLAKKMPPLQDAGPQKCLS------FSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPK  152 (392)
Q Consensus        81 ~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~------~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~  152 (392)
                      ++.|+.|++||+.+.+ ....+.       .|...|.++.      |+|++++|++++.|+.|++||+++++ ....+..
T Consensus        86 ~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~  158 (357)
T 3i2n_A           86 GDFGGNLHIWNLEAPEMPVYSVK-------GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP  158 (357)
T ss_dssp             EETTSCEEEECTTSCSSCSEEEC-------CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC
T ss_pred             ecCCCeEEEEeCCCCCccEEEEE-------ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc
Confidence            9999999999998876 333322       3778999995      57899999999999999999999876 4444443


Q ss_pred             CCC----cEEEEE----ecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecC---CCCcceEEEEEEeC
Q 016257          153 AHK----SVLDMD----FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK---DGTKPFLFCTVQRG  221 (392)
Q Consensus       153 ~~~----~i~~i~----~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~  221 (392)
                      +.+    .+.+++    |+|++++|++++.|+.|++||+++++......  +...+.+++|+|   ++..     +++++
T Consensus       159 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~-----l~~~~  231 (357)
T 3i2n_A          159 VQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN--IKNGVCSLEFDRKDISMNK-----LVATS  231 (357)
T ss_dssp             CTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEESCSSSSCCE-----EEEEE
T ss_pred             cCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC--CCCceEEEEcCCCCCCCCE-----EEEEC
Confidence            332    788888    78899999999999999999999988755433  345799999999   7876     78899


Q ss_pred             CccEEEEEeCCCceeeeeec-----ccCCCcEEEEECCCCC-EEEEEeCCCcEEEEecCCce------------------
Q 016257          222 DKALLAVYDISTWNKIGHKR-----LLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKKME------------------  277 (392)
Q Consensus       222 ~d~~i~v~d~~~~~~~~~~~-----~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~------------------  277 (392)
                      .|+.|++||+++++....+.     .|...|++++|+|+++ +|++++.||.|++||++++.                  
T Consensus       232 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~  311 (357)
T 3i2n_A          232 LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSV  311 (357)
T ss_dssp             STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEE
T ss_pred             CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccccc
Confidence            99999999999877655544     7899999999999998 89999999999999998643                  


Q ss_pred             -eeeeeeccccCcceEEEEEeeCCCeEE-EEeCCCeEEEEEeecC
Q 016257          278 -INHWSKRLHLGTSIALVEFCPTQRVVL-TASKEWGAMITKLTVP  320 (392)
Q Consensus       278 -~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~  320 (392)
                       .+..+ ..| ...|++++|+|++++|+ +++.||.|++|++...
T Consensus       312 ~~~~~~-~~~-~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          312 SLLQNV-TLS-TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             EEEEEE-ECC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             ceeecc-ccC-CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence             23333 567 88999999999999998 8999999999999754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.5e-40  Score=334.92  Aligned_cols=328  Identities=16%  Similarity=0.173  Sum_probs=267.2

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .++|++++|+|++.   ++++|+.      ++.|++|++.        .......+.+|.+.|.+++|+|++++|++++.
T Consensus       615 ~~~v~~~~~s~~~~---~l~s~~~------d~~i~vw~~~--------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~  677 (1249)
T 3sfz_A          615 TDAVYHACFSQDGQ---RIASCGA------DKTLQVFKAE--------TGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA  677 (1249)
T ss_dssp             SSCEEEEEECTTSS---EEEEEET------TSCEEEEETT--------TCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccEEEEEECCCCC---EEEEEeC------CCeEEEEECC--------CCCEEEEeccCCCCEEEEEEecCCCEEEEEeC
Confidence            46899999999984   4665544      6779999886        44556678899999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEE
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~  161 (392)
                      |+.|++||+.+++....+.       .|...|.+++|+|  ++.++++|+.|+.|++||+++++....+..|...|.+++
T Consensus       678 d~~v~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~  750 (1249)
T 3sfz_A          678 DKKVKIWDSATGKLVHTYD-------EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCR  750 (1249)
T ss_dssp             TSEEEEEETTTCCEEEEEE-------CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEE
T ss_pred             CCeEEEEECCCCceEEEEc-------CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEE
Confidence            9999999999887655543       3678999999999  556899999999999999999999888888989999999


Q ss_pred             ecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe------------------------------------------------
Q 016257          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLT------------------------------------------------  193 (392)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~------------------------------------------------  193 (392)
                      |+|+++++++++.||.|++||+++++....+.                                                
T Consensus       751 ~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~  830 (1249)
T 3sfz_A          751 FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG  830 (1249)
T ss_dssp             ECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCC
T ss_pred             EecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCC
Confidence            99999999999999999999998765544332                                                


Q ss_pred             ------cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCc
Q 016257          194 ------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD  267 (392)
Q Consensus       194 ------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  267 (392)
                            ..+...+.+++|+|++..     +++++.++.|++||+.++..+..+..|...|++++|+|++++|++++.||.
T Consensus       831 ~~~~~~~~~~~~v~~~~~sp~~~~-----l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~  905 (1249)
T 3sfz_A          831 LLAEIHTGHHSTIQYCDFSPYDHL-----AVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT  905 (1249)
T ss_dssp             EEEEEECSSSSCCCEEEECSSTTE-----EEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ceeEEcCCCCCceEEEEEcCCCCE-----EEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCe
Confidence                  133456888999999987     789999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCc-----------------------------------------------------------------------
Q 016257          268 ICVVDVKKM-----------------------------------------------------------------------  276 (392)
Q Consensus       268 i~iwd~~~~-----------------------------------------------------------------------  276 (392)
                      |++||+.+.                                                                       
T Consensus       906 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i  985 (1249)
T 3sfz_A          906 IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAI  985 (1249)
T ss_dssp             EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCC
T ss_pred             EEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCE
Confidence            999986421                                                                       


Q ss_pred             --------eeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeeee-eeeeeeeeceEEEEeee
Q 016257          277 --------EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYS-LLLALFLASAVVFYIFF  347 (392)
Q Consensus       277 --------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  347 (392)
                              +.... ..+| ...|++++|+|+|++|++++.||.|++|++............. .....+.....+++++.
T Consensus       986 ~i~d~~~~~~~~~-~~~h-~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 1063 (1249)
T 3sfz_A          986 KIIELPNNRVFSS-GVGH-KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSF 1063 (1249)
T ss_dssp             EEEETTTTSCEEE-CCCC-SSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEES
T ss_pred             EEEEcCCCceeee-cccC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEC
Confidence                    11111 1356 7789999999999999999999999999998654322111110 11111223556788889


Q ss_pred             cceeeeecccccccc
Q 016257          348 ENSDSFWNFPVARNQ  362 (392)
Q Consensus       348 d~~i~~W~~~~~~~~  362 (392)
                      |+.+++||+.+++..
T Consensus      1064 dg~v~vwd~~~~~~~ 1078 (1249)
T 3sfz_A         1064 DGTVKVWNVITGRIE 1078 (1249)
T ss_dssp             SSEEEEEETTTTCCC
T ss_pred             CCcEEEEECCCCcee
Confidence            999999999887644

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.1e-40  Score=295.45  Aligned_cols=285  Identities=16%  Similarity=0.211  Sum_probs=227.4

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC-CCCeEEEEe
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST   82 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~~~~   82 (392)
                      ..+|++++|+|++.+  ++++|+.      ++.|++|+++..      .......+.+|.+.|.+++|+| ++++|++++
T Consensus        73 ~~~v~~~~~~~~~~~--~l~s~~~------dg~i~iwd~~~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  138 (383)
T 3ei3_B           73 DRRVTSLEWHPTHPT--TVAVGSK------GGDIILWDYDVQ------NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS  138 (383)
T ss_dssp             SSCEEEEEECSSCTT--EEEEEEB------TSCEEEEETTST------TCEEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred             CCCEEEEEECCCCCC--EEEEEcC------CCeEEEEeCCCc------ccceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence            468999999998743  4554444      667999998733      2222333457999999999999 778999999


Q ss_pred             CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (392)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~  162 (392)
                      .|+.|++||+.+.. ...+..    ...+...|.+++|+|++++|++++.|+.|++||+ +++.+..+..|...|.+++|
T Consensus       139 ~d~~i~iwd~~~~~-~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~  212 (383)
T 3ei3_B          139 IRGATTLRDFSGSV-IQVFAK----TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEF  212 (383)
T ss_dssp             TTTEEEEEETTSCE-EEEEEC----CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEE
T ss_pred             CCCEEEEEECCCCc-eEEEec----cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEE
Confidence            99999999998533 222221    1125578999999999999999999999999999 56777778888889999999


Q ss_pred             cCCCC-eEEEEcCCCcEEEEECCC----CeeeEEEecCCCcceEEEEecC-CCCcceEEEEEEeCCccEEEEEeCCCcee
Q 016257          163 SLDSE-FLATTSTDGSARIWKTED----GVAWTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (392)
Q Consensus       163 ~~~~~-~l~~~~~d~~i~vwd~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~d~~i~v~d~~~~~~  236 (392)
                      +|+++ +|++++.|+.|++||+++    +..+..+.  +...+.+++|+| ++..     +++++.|+.|++||+++++.
T Consensus       213 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~-----l~~~~~d~~i~iwd~~~~~~  285 (383)
T 3ei3_B          213 NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP--HEKPVNAAYFNPTDSTK-----LLTTDQRNEIRVYSSYDWSK  285 (383)
T ss_dssp             CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE--CSSCEEEEEECTTTSCE-----EEEEESSSEEEEEETTBTTS
T ss_pred             CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec--CCCceEEEEEcCCCCCE-----EEEEcCCCcEEEEECCCCcc
Confidence            99998 899999999999999987    55666553  456899999999 9887     78899999999999998876


Q ss_pred             eeeecccC-----------------CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecc-ccCcceEEEEEee
Q 016257          237 IGHKRLLR-----------------KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL-HLGTSIALVEFCP  298 (392)
Q Consensus       237 ~~~~~~~~-----------------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~i~~~~~s~  298 (392)
                      ...+..+.                 ..+..++|+|++++  +++.|+.|++||+.+++.+..+... | ...+..++|+|
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~-~~~~~~~~~s~  362 (383)
T 3ei3_B          286 PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA-AGIISLNKFSP  362 (383)
T ss_dssp             CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB-CSCCCEEEECT
T ss_pred             ccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC-CceEEEEEEec
Confidence            65554332                 23444666666666  6778999999999999988777432 4 67788889999


Q ss_pred             CCCeEEEEeCCCeEEEEEeec
Q 016257          299 TQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       299 ~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      ++++|++++ ||.|++|+++.
T Consensus       363 ~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          363 TGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TSSEEEEEE-TTEEEEEECC-
T ss_pred             CccEEEEec-CCcEEEEecCC
Confidence            999999997 99999999874

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.9e-41  Score=298.62  Aligned_cols=244  Identities=11%  Similarity=0.047  Sum_probs=199.6

Q ss_pred             eeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCC--ccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcE
Q 016257           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG--ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (392)
Q Consensus        59 ~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  136 (392)
                      +..|.++|++++|+|++++|++++.|+.|++||+.++  +....+       ..|...|.+++|+|++++|++++.|+.|
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-------~~h~~~v~~~~~s~~~~~l~s~s~d~~v   79 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF-------SDHDKIVTCVDWAPKSNRIVTCSQDRNA   79 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB-------CCCSSCEEEEEECTTTCCEEEEETTSSE
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE-------ecCCceEEEEEEeCCCCEEEEEeCCCeE
Confidence            4446789999999999999999999999999999976  322222       1378899999999999999999999999


Q ss_pred             EEEeCCCCc---eeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee---eEEEecCCCcceEEEEecCCCC
Q 016257          137 RIMHWPSLR---IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEKIELCRFSKDGT  210 (392)
Q Consensus       137 ~i~d~~~~~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~  210 (392)
                      ++||+++++   ....+..|...|.+++|+|++++|++++.|+.|++||+++++.   ...+...+...|.+++|+|++.
T Consensus        80 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  159 (377)
T 3dwl_C           80 YVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV  159 (377)
T ss_dssp             EEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred             EEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence            999999876   5566777888999999999999999999999999999998773   6667664566899999999998


Q ss_pred             cceEEEEEEeCCccEEEEEeCC------------------CceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEe
Q 016257          211 KPFLFCTVQRGDKALLAVYDIS------------------TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (392)
Q Consensus       211 ~~~~~~~~~~~~d~~i~v~d~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  272 (392)
                      .     +++++.|+.|++||++                  .++.+..+ .|...|.+++|+|++++|++++.||.|++||
T Consensus       160 ~-----l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd  233 (377)
T 3dwl_C          160 L-----LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAY  233 (377)
T ss_dssp             E-----EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred             E-----EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            6     7899999999999985                  34555556 8889999999999999999999999999999


Q ss_pred             cCCcee----eeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          273 VKKMEI----NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       273 ~~~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      +.+++.    +..+ ..| ...|.+++|+|++++|++++.|+.+ +|+..
T Consensus       234 ~~~~~~~~~~~~~~-~~~-~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          234 PSAPEQPPRALITV-KLS-QLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             ECSTTSCEEECCCE-ECS-SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CCCCCCcceeeEee-cCC-CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            999876    4444 577 8899999999999999998877655 66654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.6e-40  Score=289.12  Aligned_cols=254  Identities=12%  Similarity=0.086  Sum_probs=202.3

Q ss_pred             EEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEeCC
Q 016257           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVD  133 (392)
Q Consensus        56 ~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d  133 (392)
                      ...+.+|.+.|++++|+|+|++|++|+.|++|+|||+.++........     ..|.+.|.+++|++  ++++|++|+.|
T Consensus         6 ~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-----~gH~~~V~~v~~~~~~~~~~l~s~s~D   80 (316)
T 3bg1_A            6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-----RGHEGPVWQVAWAHPMYGNILASCSYD   80 (316)
T ss_dssp             --------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-----ECCSSCEEEEEECCGGGSSCEEEEETT
T ss_pred             eeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-----cCCCccEEEEEeCCCCCCCEEEEEECC
Confidence            345779999999999999999999999999999999987642111111     13788999999986  48999999999


Q ss_pred             CcEEEEeCCCCc--eeecccCCCCcEEEEEecCC--CCeEEEEcCCCcEEEEECCCCeee--EEEecCCCcceEEEEecC
Q 016257          134 GHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVAW--TFLTRNSDEKIELCRFSK  207 (392)
Q Consensus       134 g~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~  207 (392)
                      ++|++||+++++  ....+..|...|.+++|+|+  +.+|++++.|++|++||++.+...  ......+...+.+++|+|
T Consensus        81 ~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  160 (316)
T 3bg1_A           81 RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP  160 (316)
T ss_dssp             SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC
T ss_pred             CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc
Confidence            999999998764  45556678789999999997  789999999999999999876322  122233455799999999


Q ss_pred             CC-----------------CcceEEEEEEeCCccEEEEEeCCCc---eeeeeecccCCCcEEEEECCCC----CEEEEEe
Q 016257          208 DG-----------------TKPFLFCTVQRGDKALLAVYDISTW---NKIGHKRLLRKPASVLSISLDG----KYLAMGS  263 (392)
Q Consensus       208 ~~-----------------~~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~  263 (392)
                      +.                 ..     +++++.|+.|++||++..   +.+..+..|...|.+++|+|++    ++|++++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~-----l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s  235 (316)
T 3bg1_A          161 AVVPGSLIDHPSGQKPNYIKR-----FASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS  235 (316)
T ss_dssp             CCCC------CCSCCCCCCCB-----EECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE
T ss_pred             ccCCccccccccccCccccce-----EEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc
Confidence            83                 33     799999999999999754   4566788899999999999986    8999999


Q ss_pred             CCCcEEEEecCCc---eeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257          264 KDGDICVVDVKKM---EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       264 ~dg~i~iwd~~~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      .|++|++||+++.   +........| ...|.+++|+|++++|++++.|+.|++|+....
T Consensus       236 ~D~~v~iw~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~  294 (316)
T 3bg1_A          236 QDGRVFIWTCDDASSNTWSPKLLHKF-NDVVWHVSWSITANILAVSGGDNKVTLWKESVD  294 (316)
T ss_dssp             TTCEEEEEECSSTTCCCCBCCEEEEC-SSCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred             CCCeEEEEEccCccccchhhhhhhcC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence            9999999999863   2112222456 789999999999999999999999999998744

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.3e-39  Score=313.30  Aligned_cols=295  Identities=18%  Similarity=0.210  Sum_probs=236.0

Q ss_pred             ceEEEeeCCCCCeeEEEEcCCC-CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC
Q 016257           54 LVTYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (392)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~sp~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  132 (392)
                      .....+++|.+.|++++|+|++ ++|++|+.|++|++|++...........  .....|...|.+++|+|++++|++|+.
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~--~~~~~h~~~v~~v~~s~~g~~l~sgs~  450 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQ--RRLTGHSHFVEDVVLSSDGQFALSGSW  450 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEE--EEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccc--ceecCCCCcEEEEEECCCCCEEEEEeC
Confidence            3445789999999999999865 6899999999999999976542211110  011247889999999999999999999


Q ss_pred             CCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe--cCCCcceEEEEecCCCC
Q 016257          133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRFSKDGT  210 (392)
Q Consensus       133 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~  210 (392)
                      |++|++||+.+++....+..|...|.+++|+|++++|++++.|++|++||+..........  ..|...|.+++|+|++.
T Consensus       451 Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  530 (694)
T 3dm0_A          451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL  530 (694)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred             CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence            9999999999999888888899999999999999999999999999999986544333222  23455799999999874


Q ss_pred             cceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcc
Q 016257          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS  290 (392)
Q Consensus       211 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  290 (392)
                      ...   +++++.|+.|++||+++++....+..|...|++++|+|++++|++|+.||.|++||+++++.+..+.  + ...
T Consensus       531 ~~~---l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~--~-~~~  604 (694)
T 3dm0_A          531 QPT---IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE--A-NSV  604 (694)
T ss_dssp             SCE---EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB--C-SSC
T ss_pred             cce---EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec--C-CCc
Confidence            322   6899999999999999999988999999999999999999999999999999999999998877653  3 568


Q ss_pred             eEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceee----------------------eeeeeeeeeeceEEEEeeec
Q 016257          291 IALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI----------------------YSLLLALFLASAVVFYIFFE  348 (392)
Q Consensus       291 i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~d  348 (392)
                      |.+++|+|++.+|++++ |+.|++|++...........                      .............+++++.|
T Consensus       605 v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D  683 (694)
T 3dm0_A          605 IHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD  683 (694)
T ss_dssp             EEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCC
Confidence            99999999998887765 56799999976543221110                      00011112234578888899


Q ss_pred             ceeeeeccc
Q 016257          349 NSDSFWNFP  357 (392)
Q Consensus       349 ~~i~~W~~~  357 (392)
                      +.|++|++.
T Consensus       684 g~i~iW~i~  692 (694)
T 3dm0_A          684 GVIRVWGIG  692 (694)
T ss_dssp             SEEEEEEC-
T ss_pred             CeEEEEecc
Confidence            999999985

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-39  Score=286.43  Aligned_cols=296  Identities=14%  Similarity=0.139  Sum_probs=244.6

Q ss_pred             CCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe
Q 016257           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (392)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  131 (392)
                      .......+.+|.+.|++++|+|++++|++++.||.|++||+.+++....+.       .|...|.+++|+|++++|++++
T Consensus        21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~~   93 (369)
T 3zwl_B           21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD-------GHTGTIWSIDVDCFTKYCVTGS   93 (369)
T ss_dssp             CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC-------CCSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh-------hcCCcEEEEEEcCCCCEEEEEe
Confidence            445667789999999999999999999999999999999998877554443       3678999999999999999999


Q ss_pred             CCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCC-----CcEEEEECCCCee-----------eEEEecC
Q 016257          132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVA-----------WTFLTRN  195 (392)
Q Consensus       132 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~-----------~~~~~~~  195 (392)
                      .||.|++||+++++....+. +...+.+++|+|+++++++++.+     +.|++||++....           ...+..+
T Consensus        94 ~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  172 (369)
T 3zwl_B           94 ADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH  172 (369)
T ss_dssp             TTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred             CCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence            99999999999998877665 67789999999999999999998     9999999976532           2222222


Q ss_pred             C-CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC-ceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEec
Q 016257          196 S-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (392)
Q Consensus       196 ~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  273 (392)
                      . ...+.+++|+|++..     +++++.++.|++||+++ .+.+..+..|...+.+++|+|++++|++++.|+.|++||+
T Consensus       173 ~~~~~~~~~~~~~~~~~-----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~  247 (369)
T 3zwl_B          173 EGLDAATVAGWSTKGKY-----IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV  247 (369)
T ss_dssp             TTCCCEEEEEECGGGCE-----EEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             cCccceeEEEEcCCCCE-----EEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEEC
Confidence            1 127999999999987     78899999999999998 7788888889999999999999999999999999999999


Q ss_pred             CCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCC--------------eEEEEEeecCccccceee-eeeee--eee
Q 016257          274 KKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW--------------GAMITKLTVPADWKEWQI-YSLLL--ALF  336 (392)
Q Consensus       274 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--------------~i~iw~~~~~~~~~~~~~-~~~~~--~~~  336 (392)
                      ++++....+.  + ...+..++|+|+++++++++.++              .+++|++........... ...+.  ...
T Consensus       248 ~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  324 (369)
T 3zwl_B          248 STLQVLKKYE--T-DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS  324 (369)
T ss_dssp             TTCCEEEEEE--C-SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             CCCceeeeec--C-CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC
Confidence            9998887764  4 78999999999999999999998              899999876544332210 00111  111


Q ss_pred             eeceEEEEeeecceeeeeccccccccc
Q 016257          337 LASAVVFYIFFENSDSFWNFPVARNQH  363 (392)
Q Consensus       337 ~~~~~~~~~~~d~~i~~W~~~~~~~~~  363 (392)
                      .....+++++.|+.|++|++..+....
T Consensus       325 ~~~~~l~s~~~dg~v~iw~~~~~~~~~  351 (369)
T 3zwl_B          325 PQGTSYASGGEDGFIRLHHFEKSYFDF  351 (369)
T ss_dssp             TTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred             CCCCEEEEEcCCCeEEEEECccccchh
Confidence            234577888899999999998876443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.2e-40  Score=293.17  Aligned_cols=289  Identities=12%  Similarity=0.158  Sum_probs=231.0

Q ss_pred             CceeeeecCCCC---CcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCC----CC
Q 016257            4 GGTVTCGSWIKR---PENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS----GD   76 (392)
Q Consensus         4 ~~~v~~~~w~~~---~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~----~~   76 (392)
                      .++|++++|+|+   +.. .+++.       +.++.|.+|++..... .  ..........|...|++++|+|+    ++
T Consensus        18 ~~~v~~i~~~p~~~~~~~-~~~~~-------~~~~~v~vw~~~~~~~-~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   86 (366)
T 3k26_A           18 NQPLFGVQFNWHSKEGDP-LVFAT-------VGSNRVTLYECHSQGE-I--RLLQSYVDADADENFYTCAWTYDSNTSHP   86 (366)
T ss_dssp             CSCEEEEEECTTCCTTSC-EEEEE-------EETTEEEEEEECGGGC-E--EEEEEEECSCTTCCEEEEEEEECTTTCCE
T ss_pred             CCceEEEEEecccCCCCc-eEEEE-------CCCCEEEEEEcCCCcE-E--EeeeeccccCCCCcEEEEEeccCCCCCCC
Confidence            579999999985   333 34442       2244699999873321 0  11111122237789999999998    66


Q ss_pred             eEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeecc---cC
Q 016257           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDE---PK  152 (392)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~  152 (392)
                      +|++|+.||.|++||+.+++....+.       .|...|.+++|+| ++++|++++.||.|++||+++++....+   ..
T Consensus        87 ~l~~~~~dg~i~v~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  159 (366)
T 3k26_A           87 LLAVAGSRGIIRIINPITMQCIKHYV-------GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG  159 (366)
T ss_dssp             EEEEEETTCEEEEECTTTCCEEEEEE-------SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTS
T ss_pred             EEEEecCCCEEEEEEchhceEeeeec-------CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccc
Confidence            99999999999999998877554443       2778999999999 9999999999999999999998887766   56


Q ss_pred             CCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec---------------------------CCCcceEEEEe
Q 016257          153 AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---------------------------NSDEKIELCRF  205 (392)
Q Consensus       153 ~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~---------------------------~~~~~v~~~~~  205 (392)
                      |...|.+++|+|++++|++++.|+.|++||+++++....+..                           .+...|.+++|
T Consensus       160 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  239 (366)
T 3k26_A          160 HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW  239 (366)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred             ccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence            778999999999999999999999999999987755433221                           14558999999


Q ss_pred             cCCCCcceEEEEEEeCCccEEEEEeCCCcee--------------eeeecccCCCcEEEEECCC--CCEEEEEeCCCcEE
Q 016257          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNK--------------IGHKRLLRKPASVLSISLD--GKYLAMGSKDGDIC  269 (392)
Q Consensus       206 ~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~--------------~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~  269 (392)
                      +  +..     +++++.|+.|++||+++.+.              +..+..|...+++++|+|+  +++|++|+.||.|+
T Consensus       240 ~--~~~-----l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~  312 (366)
T 3k26_A          240 L--GDL-----ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLY  312 (366)
T ss_dssp             E--TTE-----EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEE
T ss_pred             c--CCE-----EEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEE
Confidence            9  444     78999999999999987643              6667778889999999999  99999999999999


Q ss_pred             EEecCCceeee----eeecccc-CcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          270 VVDVKKMEINH----WSKRLHL-GTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       270 iwd~~~~~~~~----~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      +||+.+++...    .+ ..|. ...|++++|+|++++|++++.||.|++|++.
T Consensus       313 vwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          313 VWDLEVEDPHKAKCTTL-THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEECCSSSGGGCEEEEE-CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEECCCCCCccccceEE-cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            99999876432    22 2331 5899999999999999999999999999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-41  Score=303.11  Aligned_cols=294  Identities=12%  Similarity=0.146  Sum_probs=240.1

Q ss_pred             CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCC-CCeEEEE
Q 016257            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCS   81 (392)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-~~~l~~~   81 (392)
                      ...+|++++|+|++..   +++|+.      ++.+++|.++....    .......+.+|.+.|.+++|+|+ +++|+++
T Consensus        66 ~~~~v~~~~~s~~~~~---l~~~~~------dg~v~vw~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  132 (416)
T 2pm9_A           66 VDSKFNDLDWSHNNKI---IAGALD------NGSLELYSTNEANN----AINSMARFSNHSSSVKTVKFNAKQDNVLASG  132 (416)
T ss_dssp             CSSCEEEEEECSSSSC---EEEEES------SSCEEEECCSSTTS----CCCEEEECCCSSSCCCEEEECSSSTTBEEEE
T ss_pred             cCCceEEEEECCCCCe---EEEEcc------CCeEEEeecccccc----cccchhhccCCccceEEEEEcCCCCCEEEEE
Confidence            3568999999999853   554444      56799998874221    12355678899999999999998 8999999


Q ss_pred             eCCCeEEEEEEeCCc------cceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeecccCC-
Q 016257           82 TTNGGCKLFEVYGGA------TDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKA-  153 (392)
Q Consensus        82 ~~d~~i~iw~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-  153 (392)
                      +.|+.|++||+.+.+      .....    .....|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..+ 
T Consensus       133 ~~dg~v~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  208 (416)
T 2pm9_A          133 GNNGEIFIWDMNKCTESPSNYTPLTP----GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTS  208 (416)
T ss_dssp             CSSSCEEBCBTTTTSSCTTTCCCBCC----CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCC
T ss_pred             cCCCeEEEEECCCCcccccccccccc----ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccc
Confidence            999999999998775      21111    112347789999999998 789999999999999999998887776665 


Q ss_pred             -----CCcEEEEEecCCC-CeEEEEcCCC---cEEEEECCCC-eeeEEEecCCCcceEEEEecC-CCCcceEEEEEEeCC
Q 016257          154 -----HKSVLDMDFSLDS-EFLATTSTDG---SARIWKTEDG-VAWTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGD  222 (392)
Q Consensus       154 -----~~~i~~i~~~~~~-~~l~~~~~d~---~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~  222 (392)
                           ...|.+++|+|++ .++++++.|+   .|++||++++ +....+...+...|.+++|+| ++..     +++++.
T Consensus       209 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-----l~s~~~  283 (416)
T 2pm9_A          209 PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHL-----LLSSGR  283 (416)
T ss_dssp             CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSC-----EEEEES
T ss_pred             cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCe-----EEEEeC
Confidence                 5689999999997 6899999998   9999999986 555555513455899999999 7776     789999


Q ss_pred             ccEEEEEeCCCceeeeeecccCCCcEEEEECCCC-CEEEEEeCCCcEEEEecCCceeeeeee------------------
Q 016257          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSK------------------  283 (392)
Q Consensus       223 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~------------------  283 (392)
                      |+.|++||+++++.+..+..|...+.+++|+|++ .+|++++.|+.|++||+.+.+......                  
T Consensus       284 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (416)
T 2pm9_A          284 DNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVS  363 (416)
T ss_dssp             SSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------------
T ss_pred             CCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccc
Confidence            9999999999999999999999999999999999 899999999999999998765432210                  


Q ss_pred             ----------------ccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          284 ----------------RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       284 ----------------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                                      ..| ..++.+++|+|+|++|++++.|+.|+||++..
T Consensus       364 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          364 REESKEKPSVFHLQAPTWY-GEPSPAAHWAFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             ---CCSCCCSSCCCCCSTT-CCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred             ccccccccccccccCCccc-cCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence                            014 56778899999999999999999999998864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-39  Score=292.94  Aligned_cols=287  Identities=16%  Similarity=0.207  Sum_probs=241.7

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .++|++++|+|++.   ++++|+.      ++.|.+|..         .......+.+|...|.+++|+|++++|++++.
T Consensus       108 ~~~v~~~~~s~~~~---~l~~~~~------dg~i~i~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (425)
T 1r5m_A          108 TNQVTCLAWSHDGN---SIVTGVE------NGELRLWNK---------TGALLNVLNFHRAPIVSVKWNKDGTHIISMDV  169 (425)
T ss_dssp             CBCEEEEEECTTSS---EEEEEET------TSCEEEEET---------TSCEEEEECCCCSCEEEEEECTTSSEEEEEET
T ss_pred             CCceEEEEEcCCCC---EEEEEeC------CCeEEEEeC---------CCCeeeeccCCCccEEEEEECCCCCEEEEEec
Confidence            44899999999884   4555444      566889972         33445668899999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCC--------CCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCC
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMP--------PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK  155 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  155 (392)
                      |+.|++||+.+++....+......        .......+.+++|++++ .+++++.++.|++||+++++....+..|..
T Consensus       170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~  248 (425)
T 1r5m_A          170 ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHG  248 (425)
T ss_dssp             TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSS
T ss_pred             CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCC
Confidence            999999999887755444321110        00011128899999986 688899999999999999888877878888


Q ss_pred             cEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce
Q 016257          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (392)
Q Consensus       156 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~  235 (392)
                      .|.+++|+|++++|++++.|+.|++||+++++....+..+ ...+.+++|+|++ .     +++++.|+.|++||+++++
T Consensus       249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~-~-----l~~~~~d~~i~i~d~~~~~  321 (425)
T 1r5m_A          249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH-SQSIVSASWVGDD-K-----VISCSMDGSVRLWSLKQNT  321 (425)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC-SSCEEEEEEETTT-E-----EEEEETTSEEEEEETTTTE
T ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC-CccEEEEEECCCC-E-----EEEEeCCCcEEEEECCCCc
Confidence            9999999999999999999999999999999888888655 4479999999999 4     7899999999999999999


Q ss_pred             eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce--------------------eeeeeeccccCc--ceEE
Q 016257          236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME--------------------INHWSKRLHLGT--SIAL  293 (392)
Q Consensus       236 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~~~--~i~~  293 (392)
                      .+..+..+...+.+++|+|++++|++++.||.|++||+++++                    .+..+ ..| ..  .|++
T Consensus       322 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~v~~  399 (425)
T 1r5m_A          322 LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY-QSS-QDNDYIFD  399 (425)
T ss_dssp             EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE-CCT-TCCCCEEE
T ss_pred             EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh-cCc-ccCCceEE
Confidence            998888899999999999999999999999999999999877                    55555 455 44  9999


Q ss_pred             EEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          294 VEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       294 ~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      ++|+|++++|++++.||.|++|+++
T Consensus       400 ~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          400 LSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEECTTSSEEEEEESSSCCEEEECC
T ss_pred             EEccCCCceEEEEecCceEEEEeec
Confidence            9999999999999999999999985

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-38  Score=276.24  Aligned_cols=281  Identities=12%  Similarity=0.113  Sum_probs=238.1

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .++|++++| |++.   ++++|+.      ++.|++|+++        .......+..|...|.+++|+|++++|++++.
T Consensus        18 ~~~v~~~~~-~~~~---~l~s~~~------dg~v~vw~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   79 (313)
T 3odt_A           18 DQDVRDVVA-VDDS---KVASVSR------DGTVRLWSKD--------DQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK   79 (313)
T ss_dssp             SSCEEEEEE-EETT---EEEEEET------TSEEEEEEES--------SSEEEEEEEECSSCEEEEEEETTTTEEEEEET
T ss_pred             CCCcEEEEe-cCCC---EEEEEEc------CCcEEEEECC--------CCEEEEEeecCCccEEEEEECCCCCEEEEecC
Confidence            568999999 7764   3554444      6789999986        44555677889999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      |+.+++|++...........    ...|...|.+++|  ++++|++++.|+.|++||  .++....+..+...+.++.|+
T Consensus        80 dg~i~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~  151 (313)
T 3odt_A           80 DTMINGVPLFATSGEDPLYT----LIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVV  151 (313)
T ss_dssp             TSCEEEEETTCCTTSCC-CE----ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEE
T ss_pred             CCeEEEEEeeecCCCCcccc----hhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEc
Confidence            99999999876542211111    1237789999999  577999999999999999  566667777788899999998


Q ss_pred             C-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc
Q 016257          164 L-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (392)
Q Consensus       164 ~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~  242 (392)
                      | +++++++++.|+.|++||  ..+....+...+...+.+++|+|++.      +++++.++.|++||+++++.+..+..
T Consensus       152 ~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~dg~i~i~d~~~~~~~~~~~~  223 (313)
T 3odt_A          152 SFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH------FISCSNDGLIKLVDMHTGDVLRTYEG  223 (313)
T ss_dssp             ETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE------EEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             cCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe------EEEccCCCeEEEEECCchhhhhhhhc
Confidence            8 899999999999999999  45666777765667899999999988      58899999999999999999999999


Q ss_pred             cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                      |...+++++|+|++ .|++++.||.|++||+++++....+ ..| ...|.+++|+|+++ +++++.||.|++|++.....
T Consensus       224 ~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~-~~~-~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          224 HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI-TLP-AISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE-ECS-SSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred             CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEE-ecc-CceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence            99999999999999 5889999999999999999988776 467 78999999999998 66799999999999986544

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=8.2e-39  Score=283.17  Aligned_cols=296  Identities=15%  Similarity=0.188  Sum_probs=230.1

Q ss_pred             CCceEEEeeCCCCCeeEEEEcCCCCeEE-EEeC---CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC---C
Q 016257           52 SPLVTYVFDESEGDPMTIAVNPSGDDFV-CSTT---NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---G  124 (392)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~-~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~  124 (392)
                      .......+.+|.+.|.+++|+|+++.++ +|+.   |+.|++||+.+++.......      .|...|.+++|+|+   +
T Consensus         7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~   80 (357)
T 3i2n_A            7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI------EKAKPIKCGTFGATSLQQ   80 (357)
T ss_dssp             CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE------EESSCEEEEECTTCCTTT
T ss_pred             hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee------cccCcEEEEEEcCCCCCC
Confidence            3345566788999999999999997554 5555   89999999998764333221      36789999999998   6


Q ss_pred             CEEEEEeCCCcEEEEeCCCCc-eeecccCCCCcEEEEE------ecCCCCeEEEEcCCCcEEEEECCCCe-eeEEEecCC
Q 016257          125 SRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMD------FSLDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNS  196 (392)
Q Consensus       125 ~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~i~------~~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~  196 (392)
                      ++|++++.||.|++||+++++ ....+..|...|.++.      |+|++++|++++.|+.|++||+++++ ....+..+.
T Consensus        81 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~  160 (357)
T 3i2n_A           81 RYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ  160 (357)
T ss_dssp             CCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT
T ss_pred             ceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC
Confidence            999999999999999999887 6777778888999995      57899999999999999999999886 666665432


Q ss_pred             ---CcceEEEE----ecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECC---CCCEEEEEeCCC
Q 016257          197 ---DEKIELCR----FSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL---DGKYLAMGSKDG  266 (392)
Q Consensus       197 ---~~~v~~~~----~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg  266 (392)
                         ...+.+++    |+|++..     +++++.|+.|++||+++++... ...+...+.+++|+|   ++.+|++++.||
T Consensus       161 ~~~~~~v~~~~~~~~~~~~~~~-----l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  234 (357)
T 3i2n_A          161 GENKRDCWTVAFGNAYNQEERV-----VCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEG  234 (357)
T ss_dssp             TSCCCCEEEEEEECCCC-CCCE-----EEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred             CCCCCceEEEEEEeccCCCCCE-----EEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence               33688888    7888886     7889999999999999988753 456788999999999   999999999999


Q ss_pred             cEEEEecCCceeeeeee----ccccCcceEEEEEeeCCC-eEEEEeCCCeEEEEEeecCccccc-------------eee
Q 016257          267 DICVVDVKKMEINHWSK----RLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLTVPADWKE-------------WQI  328 (392)
Q Consensus       267 ~i~iwd~~~~~~~~~~~----~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~-------------~~~  328 (392)
                      .|++||+++++....+.    ..| ...|++++|+|+++ +|++++.||.|++|++........             ...
T Consensus       235 ~i~i~d~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~  313 (357)
T 3i2n_A          235 KFHVFDMRTQHPTKGFASVSEKAH-KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSL  313 (357)
T ss_dssp             EEEEEEEEEEETTTEEEEEEEECC-SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEE
T ss_pred             eEEEEeCcCCCcccceeeeccCCC-cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccce
Confidence            99999999877554432    367 89999999999998 899999999999999986543210             000


Q ss_pred             ee-------eeeee--eeeceEEE-Eeeecceeeeecccccc
Q 016257          329 YS-------LLLAL--FLASAVVF-YIFFENSDSFWNFPVAR  360 (392)
Q Consensus       329 ~~-------~~~~~--~~~~~~~~-~~~~d~~i~~W~~~~~~  360 (392)
                      ..       .+...  ......++ +++.|+.|++|++...+
T Consensus       314 ~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          314 LQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             eeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            00       01111  11223455 67889999999998654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.1e-39  Score=292.51  Aligned_cols=281  Identities=15%  Similarity=0.104  Sum_probs=230.4

Q ss_pred             CeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 016257           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL  144 (392)
Q Consensus        65 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~  144 (392)
                      .+++++|+|++++|++++.|+.+++||+.+.+....+        .....+....|++++++|++++.||.|++||++++
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  129 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKML--------KRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN  129 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTS--------CSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSC
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEE--------ecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCc
Confidence            4558999999999999999999999998776532221        12244555678999999999999999999999998


Q ss_pred             ceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCcc
Q 016257          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (392)
Q Consensus       145 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~  224 (392)
                      +....+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..+. ..|.+++|+|++..     +++++.|+
T Consensus       130 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~-----l~s~~~d~  203 (420)
T 3vl1_A          130 LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHR-ATVTDIAIIDRGRN-----VLSASLDG  203 (420)
T ss_dssp             EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCS-SCEEEEEEETTTTE-----EEEEETTS
T ss_pred             ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCC-CcEEEEEEcCCCCE-----EEEEcCCC
Confidence            8887777888899999999999999999999999999999999988887654 58999999999987     78999999


Q ss_pred             EEEEEeCCCceeeeeeccc---C---------------------CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeee
Q 016257          225 LLAVYDISTWNKIGHKRLL---R---------------------KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH  280 (392)
Q Consensus       225 ~i~v~d~~~~~~~~~~~~~---~---------------------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  280 (392)
                      .|++||+++++.+..+..+   .                     ..+.+++|+|++++|++++.||.|++||+++++...
T Consensus       204 ~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~  283 (420)
T 3vl1_A          204 TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTI  283 (420)
T ss_dssp             CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEE
T ss_pred             cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeE
Confidence            9999999999888776642   2                     344455568999999999999999999999998877


Q ss_pred             eeeccccCcceEEEEEeeCCC-eEEEEeCCCeEEEEEeecCcc-ccceee--eeeeee-eeeeceEEEEeeecceeeeec
Q 016257          281 WSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLTVPAD-WKEWQI--YSLLLA-LFLASAVVFYIFFENSDSFWN  355 (392)
Q Consensus       281 ~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~-~~~~~~--~~~~~~-~~~~~~~~~~~~~d~~i~~W~  355 (392)
                      .+...| ...|++++|+|+++ +|++++.||.|++|++..... ......  ...... .......+++++.|+.|++|+
T Consensus       284 ~~~~~~-~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~  362 (420)
T 3vl1_A          284 QLPSKF-TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDI  362 (420)
T ss_dssp             EECCTT-SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEE
T ss_pred             Eccccc-CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEe
Confidence            776677 88999999999999 999999999999999987643 222211  111111 222445777788999999999


Q ss_pred             ccccc
Q 016257          356 FPVAR  360 (392)
Q Consensus       356 ~~~~~  360 (392)
                      +..++
T Consensus       363 ~~~~~  367 (420)
T 3vl1_A          363 ISDPE  367 (420)
T ss_dssp             ECCTT
T ss_pred             ccCCC
Confidence            98743

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.2e-38  Score=285.07  Aligned_cols=282  Identities=12%  Similarity=0.156  Sum_probs=230.5

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEee-CCCCCeeEEEEcCCCCeEEEEeCC
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEGDPMTIAVNPSGDDFVCSTTN   84 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~~~~~d   84 (392)
                      .+.+++|+++.    +++       .+.++.|.+|+++.        ......+. .|...|.+++|+|++++|++|+.|
T Consensus        95 ~~~~~~~s~~~----l~~-------~~~d~~v~lw~~~~--------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  155 (401)
T 4aez_A           95 YLNLLDWSNLN----VVA-------VALERNVYVWNADS--------GSVSALAETDESTYVASVKWSHDGSFLSVGLGN  155 (401)
T ss_dssp             TCBCEEECTTS----EEE-------EEETTEEEEEETTT--------CCEEEEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred             eEEEEeecCCC----EEE-------EECCCeEEEeeCCC--------CcEeEeeecCCCCCEEEEEECCCCCEEEEECCC
Confidence            35567777643    444       22366799998863        22233333 388999999999999999999999


Q ss_pred             CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC-CCceeecccCCCCcEEEEEec
Q 016257           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP-SLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      |.|++||+.+++....+.       .|...|.+++|  ++++|++++.||.|++||++ .......+..|...|.+++|+
T Consensus       156 g~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  226 (401)
T 4aez_A          156 GLVDIYDVESQTKLRTMA-------GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR  226 (401)
T ss_dssp             SCEEEEETTTCCEEEEEC-------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred             CeEEEEECcCCeEEEEec-------CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc
Confidence            999999998876554443       37789999999  56799999999999999998 455566677788899999999


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeC--CccEEEEEeCCCceeeeeec
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG--DKALLAVYDISTWNKIGHKR  241 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~d~~i~v~d~~~~~~~~~~~  241 (392)
                      |++++|++++.|+.|++||+++++....+..+ ...|.+++|+|++..+    +++++  .|+.|++||+++++.+..+.
T Consensus       227 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l----l~~~~gs~d~~i~i~d~~~~~~~~~~~  301 (401)
T 4aez_A          227 SDGLQLASGGNDNVVQIWDARSSIPKFTKTNH-NAAVKAVAWCPWQSNL----LATGGGTMDKQIHFWNAATGARVNTVD  301 (401)
T ss_dssp             TTSSEEEEEETTSCEEEEETTCSSEEEEECCC-SSCCCEEEECTTSTTE----EEEECCTTTCEEEEEETTTCCEEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEccCCCCCccEEecCC-cceEEEEEECCCCCCE----EEEecCCCCCEEEEEECCCCCEEEEEe
Confidence            99999999999999999999999888887655 4579999999988762    34443  79999999999998887765


Q ss_pred             ccCCCcEEEEECCCCCEEEE--EeCCCcEEEEecCCceeeeee-eccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          242 LLRKPASVLSISLDGKYLAM--GSKDGDICVVDVKKMEINHWS-KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       242 ~~~~~v~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                       +...+.+++|+|+++++++  |+.||.|++||+.+++..... ...| ...|.+++|+|++++|++++.||.|++|++.
T Consensus       302 -~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~  379 (401)
T 4aez_A          302 -AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH-DTRVLYSALSPDGRILSTAASDENLKFWRVY  379 (401)
T ss_dssp             -CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC-SSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred             -CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC-CCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence             5678999999999999999  448999999999997655443 2577 8899999999999999999999999999998


Q ss_pred             cCcc
Q 016257          319 VPAD  322 (392)
Q Consensus       319 ~~~~  322 (392)
                      ....
T Consensus       380 ~~~~  383 (401)
T 4aez_A          380 DGDH  383 (401)
T ss_dssp             C---
T ss_pred             CCcc
Confidence            6654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-39  Score=294.90  Aligned_cols=294  Identities=13%  Similarity=0.126  Sum_probs=228.5

Q ss_pred             CceeeeecCCC-CCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe
Q 016257            4 GGTVTCGSWIK-RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (392)
Q Consensus         4 ~~~v~~~~w~~-~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~   82 (392)
                      .++|++++|+| ++   .++++|+.      ++.|++|++.......  .......+ +|.+.|.+++|+|++++|++++
T Consensus        63 ~~~V~~~~~s~~~~---~~l~s~s~------dg~v~vwd~~~~~~~~--~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s  130 (437)
T 3gre_A           63 PNSITSSAVSPGET---PYLITGSD------QGVIKIWNLKEIIVGE--VYSSSLTY-DCSSTVTQITMIPNFDAFAVSS  130 (437)
T ss_dssp             TSCEEEEEEECSSS---CEEEEEET------TSEEEEEEHHHHHTTC--CCSCSEEE-ECSSCEEEEEECTTSSEEEEEE
T ss_pred             CCceEEEEECCCCC---CEEEEecC------CceEEEeECcccccCc--ccceeeec-cCCCCEEEEEEeCCCCEEEEEe
Confidence            47999999999 77   35666554      7789999987411111  11112223 4899999999999999999999


Q ss_pred             CCCeEEEEEEe---CCccceeeccccCC-----CCCCCCCeEEEE--ecCCCCEEEEEeCCCcEEEEeCCCCceeecccC
Q 016257           83 TNGGCKLFEVY---GGATDINLLAKKMP-----PLQDAGPQKCLS--FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (392)
Q Consensus        83 ~d~~i~iw~~~---~~~~~~~~~~~~~~-----~~~~~~~v~~~~--~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  152 (392)
                      .|+.|++||+.   .++...........     ...+...+.++.  +++++.+|++++.|+.|++||+++++.+..+..
T Consensus       131 ~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  210 (437)
T 3gre_A          131 KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN  210 (437)
T ss_dssp             TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence            99999999995   44332221111100     001456777777  668899999999999999999999998888777


Q ss_pred             --CCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecC----CCCcceEEEEEEeCCccEE
Q 016257          153 --AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK----DGTKPFLFCTVQRGDKALL  226 (392)
Q Consensus       153 --~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~d~~i  226 (392)
                        |...|.+++|+|++++|++++.||.|++||+++++++..+...+...|.+++|+|    ++..     +++++.|+.|
T Consensus       211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~-----l~s~~~dg~i  285 (437)
T 3gre_A          211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVI-----VVGGSSKTFL  285 (437)
T ss_dssp             CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEE-----EEEESTTEEE
T ss_pred             CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccE-----EEEEcCCCcE
Confidence              6779999999999999999999999999999999999888745556899997665    4444     7999999999


Q ss_pred             EEEeCCCceeeeeecc--------------------------cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeee
Q 016257          227 AVYDISTWNKIGHKRL--------------------------LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH  280 (392)
Q Consensus       227 ~v~d~~~~~~~~~~~~--------------------------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  280 (392)
                      ++||+++++.+..+..                          |...|++++|+ ++++|++|+.|+.|++||+.+++...
T Consensus       286 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~  364 (437)
T 3gre_A          286 TIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK  364 (437)
T ss_dssp             EEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred             EEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence            9999998887665543                          34558889999 77999999999999999999887665


Q ss_pred             eeec------------------------------------cccCcceEEEEEeeC--CCeEEEEeCCCeEEEEE
Q 016257          281 WSKR------------------------------------LHLGTSIALVEFCPT--QRVVLTASKEWGAMITK  316 (392)
Q Consensus       281 ~~~~------------------------------------~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~iw~  316 (392)
                      .+..                                    .| ...|++++|+++  +.+|++|+.||.|+||+
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          365 AVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYH-HDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEECC--CCCEEEEEEEETTEEEEEEECC--------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             EEecccccCceEEEEEeecceEEEEEecccccccccCccccc-ccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            5432                                    16 778888888887  66888888888888884

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.5e-38  Score=311.69  Aligned_cols=285  Identities=11%  Similarity=0.136  Sum_probs=245.6

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .++|+|++|+|++.   ++++|+.      ++.|.+|++.        .......+.+|.+.|.+++|+|++++|++++.
T Consensus        13 ~~~v~~i~~sp~~~---~la~~~~------~g~v~iwd~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   75 (814)
T 3mkq_A           13 SDRVKGIDFHPTEP---WVLTTLY------SGRVEIWNYE--------TQVEVRSIQVTETPVRAGKFIARKNWIIVGSD   75 (814)
T ss_dssp             CSCEEEEEECSSSS---EEEEEET------TSEEEEEETT--------TTEEEEEEECCSSCEEEEEEEGGGTEEEEEET
T ss_pred             CCceEEEEECCCCC---EEEEEeC------CCEEEEEECC--------CCceEEEEecCCCcEEEEEEeCCCCEEEEEeC
Confidence            56899999999984   4555443      6679999876        44556678899999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC-ceeecccCCCCcEEEEEe
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-RIILDEPKAHKSVLDMDF  162 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~i~~  162 (392)
                      ||.|++||+.+++....+.       .|.+.|.+++|+|++++|++++.||.|++||++++ .....+..|...|.+++|
T Consensus        76 dg~i~vw~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~  148 (814)
T 3mkq_A           76 DFRIRVFNYNTGEKVVDFE-------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF  148 (814)
T ss_dssp             TSEEEEEETTTCCEEEEEE-------CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEe-------cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEE
Confidence            9999999998887555443       26789999999999999999999999999999887 455566677789999999


Q ss_pred             cC-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecC--CCCcceEEEEEEeCCccEEEEEeCCCceeeee
Q 016257          163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK--DGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (392)
Q Consensus       163 ~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~  239 (392)
                      +| +++.|++++.||.|++||+++++....+..++...+.+++|+|  ++..     +++++.++.|++||+++++.+..
T Consensus       149 ~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----l~~~~~dg~i~~~d~~~~~~~~~  223 (814)
T 3mkq_A          149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY-----MITASDDLTIKIWDYQTKSCVAT  223 (814)
T ss_dssp             ETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE-----EEEECTTSEEEEEETTTTEEEEE
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE-----EEEEeCCCEEEEEECCCCcEEEE
Confidence            99 8899999999999999999998888888877766899999999  7776     78999999999999999999988


Q ss_pred             ecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCe-EEEEeCCCeEEEEEee
Q 016257          240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV-VLTASKEWGAMITKLT  318 (392)
Q Consensus       240 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~iw~~~  318 (392)
                      +..|...+++++|+|++++|++++.||.|++||+.+++....+ ..| ...+.+++|+|+++. +++++.|+.+.+|++.
T Consensus       224 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (814)
T 3mkq_A          224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL-NVG-LERSWCIATHPTGRKNYIASGFDNGFTVLSLG  301 (814)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE-CCS-SSSEEEEEECTTCGGGEEEEEETTEEEEEECS
T ss_pred             EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ecC-CCcEEEEEEccCCCceEEEEEeCCCEEEEEcC
Confidence            9999999999999999999999999999999999998887766 456 789999999999873 2444556678888865


Q ss_pred             c
Q 016257          319 V  319 (392)
Q Consensus       319 ~  319 (392)
                      .
T Consensus       302 ~  302 (814)
T 3mkq_A          302 N  302 (814)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.3e-37  Score=295.41  Aligned_cols=329  Identities=16%  Similarity=0.124  Sum_probs=243.7

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC-eEEEEe
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCST   82 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~~~~   82 (392)
                      .++|.+++|+|++..   +++++..    .+....++.++        .......+.+|...|.+++|+|+++ .+++++
T Consensus       116 ~~~v~~~~~s~~~~~---l~~~~~~----~~~~~~v~~~d--------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  180 (615)
T 1pgu_A          116 AGPISDISWDFEGRR---LCVVGEG----RDNFGVFISWD--------SGNSLGEVSGHSQRINACHLKQSRPMRSMTVG  180 (615)
T ss_dssp             SSCEEEEEECTTSSE---EEEEECC----SSCSEEEEETT--------TCCEEEECCSCSSCEEEEEECSSSSCEEEEEE
T ss_pred             cccEEEEEEeCCCCE---EEEeccC----CCCccEEEEEE--------CCCcceeeecCCccEEEEEECCCCCcEEEEEe
Confidence            568999999999854   3333321    12224455555        2234566889999999999999998 799999


Q ss_pred             CCCeEEEEEEeCCccceeeccccCCCCCCCC---CeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeecc-c---CCC
Q 016257           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAG---PQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDE-P---KAH  154 (392)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-~---~~~  154 (392)
                      .|+.|++||+.+.+....+.       .|..   .|.+++|+|+ +++|++++.|+.|++||+++++.+..+ .   .|.
T Consensus       181 ~d~~v~vwd~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  253 (615)
T 1pgu_A          181 DDGSVVFYQGPPFKFSASDR-------THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ  253 (615)
T ss_dssp             TTTEEEEEETTTBEEEEEEC-------SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCC
T ss_pred             CCCcEEEEeCCCcceeeeec-------ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccC
Confidence            99999999987766544433       2556   8999999999 999999999999999999999988777 4   677


Q ss_pred             CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecC---------------------------------------
Q 016257          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN---------------------------------------  195 (392)
Q Consensus       155 ~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~---------------------------------------  195 (392)
                      ..|.+++|+ ++++|++++.|+.|++||+++++.+..+..+                                       
T Consensus       254 ~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~  332 (615)
T 1pgu_A          254 GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVL  332 (615)
T ss_dssp             SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEE
T ss_pred             CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEE
Confidence            799999999 9999999999999999999877665544322                                       


Q ss_pred             -----CCcc---------------------------------eEEEEecCCCCcceE-----------------------
Q 016257          196 -----SDEK---------------------------------IELCRFSKDGTKPFL-----------------------  214 (392)
Q Consensus       196 -----~~~~---------------------------------v~~~~~~~~~~~~~~-----------------------  214 (392)
                           +...                                 |.+++|.+ +..++.                       
T Consensus       333 ~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~  411 (615)
T 1pgu_A          333 KTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSK-AQEYSSISWDDTLKVNGITKHEFGSQPKV  411 (615)
T ss_dssp             EEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCS-TTCCEEEETTTEEEETTEEEEECSSCEEE
T ss_pred             EEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECC-CcEEEEEeCCCCEEEEEcccCcccCCceE
Confidence                 1112                                 33333311 222000                       


Q ss_pred             ---------------------------------------------EEEEEeCC-ccEEEEEeCCCceee-eeecccCCCc
Q 016257          215 ---------------------------------------------FCTVQRGD-KALLAVYDISTWNKI-GHKRLLRKPA  247 (392)
Q Consensus       215 ---------------------------------------------~~~~~~~~-d~~i~v~d~~~~~~~-~~~~~~~~~v  247 (392)
                                                                   -.+++++. ++.|++||+.+++.. ..+..|...|
T Consensus       412 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v  491 (615)
T 1pgu_A          412 ASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP  491 (615)
T ss_dssp             EEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCE
T ss_pred             EEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCce
Confidence                                                         01333444 666777776665444 5566788899


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEee----------CCCeEEEEeCCCeEEEEEe
Q 016257          248 SVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP----------TQRVVLTASKEWGAMITKL  317 (392)
Q Consensus       248 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~----------~~~~l~~~~~dg~i~iw~~  317 (392)
                      ++++|+|++++|++++.||.|++||+.+++.+..+...| ...|++++|+|          ++++|++++.||.|++|++
T Consensus       492 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~  570 (615)
T 1pgu_A          492 SYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR-TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV  570 (615)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC-SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred             EEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCC-CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEEC
Confidence            999999999999999999999999999999888764338 89999999999          9999999999999999999


Q ss_pred             ecCc-cccce---eeeeeeeeeeeeceEEEEeeecceeeeecccc
Q 016257          318 TVPA-DWKEW---QIYSLLLALFLASAVVFYIFFENSDSFWNFPV  358 (392)
Q Consensus       318 ~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~  358 (392)
                      .... .....   .............. +++++.|+.|++|++.+
T Consensus       571 ~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          571 KRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             SCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             CCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence            8752 22211   00111111222334 78888999999999875

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=5.3e-38  Score=284.26  Aligned_cols=285  Identities=11%  Similarity=0.136  Sum_probs=232.1

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d   84 (392)
                      +.+.+++|++++    ++++       +.++.|++|+.+..      .......+.+|...|++++|+|+|++|++|+.|
T Consensus       106 ~y~~~l~wS~~n----~lAv-------gld~tV~lWd~~tg------~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D  168 (420)
T 4gga_A          106 YYLNLVDWSSGN----VLAV-------ALDNSVYLWSASSG------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS  168 (420)
T ss_dssp             TTCBCEEECTTS----EEEE-------EETTEEEEEETTTC------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             ccceeEEECCCC----EEEE-------EeCCEEEEEECCCC------CEEEEEEecCCCCcEEEEEECCCCCEEEEEECC
Confidence            446779999864    4553       23667999987622      112234456788999999999999999999999


Q ss_pred             CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-eeecccCCCCcEEEEEec
Q 016257           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~  163 (392)
                      |.|++||+.+++....+.       .|...+.++++  ++..|++|+.|+.+++||..... .+..+..|...+..+.|+
T Consensus       169 g~v~iWd~~~~~~~~~~~-------~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~  239 (420)
T 4gga_A          169 AEVQLWDVQQQKRLRNMT-------SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA  239 (420)
T ss_dssp             SCEEEEETTTTEEEEEEC-------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred             CeEEEEEcCCCcEEEEEe-------CCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence            999999999887655443       36778888777  46799999999999999987654 345566777899999999


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCee----eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeee
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGVA----WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~  239 (392)
                      |+++++++++.|+.+++|+...++.    +.... .+...|.+++|+|.+..++  +...++.|+.|++||+++++....
T Consensus       240 ~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~-~~~~~V~~~~~~p~~~~~l--a~~~gs~D~~I~iwd~~t~~~~~~  316 (420)
T 4gga_A          240 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT-QHQGAVKAVAWCPWQSNVL--ATGGGTSDRHIRIWNVCSGACLSA  316 (420)
T ss_dssp             TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEEC-CCSSCEEEEEECTTCTTEE--EEEECTTTCEEEEEETTTTEEEEE
T ss_pred             CCCCeeeeeeccccceEEeeccccccceeeeeec-ccCCceeeeeeCCCcccEE--EEEeecCCCEEEEEeCCcccccee
Confidence            9999999999999999999987653    33333 3455899999999988632  245677899999999999998877


Q ss_pred             ecccCCCcEEEEECCCCCEEEEEe--CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEe
Q 016257          240 KRLLRKPASVLSISLDGKYLAMGS--KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (392)
Q Consensus       240 ~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  317 (392)
                      +.. ...+.++.|+|+++.+++++  .|+.|+|||+.+++.+..+ .+| .+.|++++|+|||++|++|+.|++|++|++
T Consensus       317 ~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l-~gH-~~~V~~l~~spdg~~l~S~s~D~tvriWdv  393 (420)
T 4gga_A          317 VDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KGH-TSRVLSLTMSPDGATVASAAADETLRLWRC  393 (420)
T ss_dssp             EEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE-CCC-SSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             ecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE-cCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence            665 45788999999999988765  7899999999999988877 689 899999999999999999999999999999


Q ss_pred             ecCc
Q 016257          318 TVPA  321 (392)
Q Consensus       318 ~~~~  321 (392)
                      ....
T Consensus       394 ~~~~  397 (420)
T 4gga_A          394 FELD  397 (420)
T ss_dssp             SCSS
T ss_pred             CCCC
Confidence            7543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-39  Score=313.50  Aligned_cols=200  Identities=7%  Similarity=0.062  Sum_probs=163.0

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .++|+|++|+|++   .++++|+.      ++.|++|..+        ....... ..|...|.+++|+| +++|++++.
T Consensus        17 ~~~V~~lafspdg---~~lAsgs~------Dg~I~lw~~~--------~~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~   77 (902)
T 2oaj_A           17 SSKPIAAAFDFTQ---NLLAIATV------TGEVHIYGQQ--------QVEVVIK-LEDRSAIKEMRFVK-GIYLVVINA   77 (902)
T ss_dssp             SSCEEEEEEETTT---TEEEEEET------TSEEEEECST--------TCEEEEE-CSSCCCEEEEEEET-TTEEEEEET
T ss_pred             CCCcEEEEECCCC---CEEEEEeC------CCEEEEEeCC--------CcEEEEE-cCCCCCEEEEEEcC-CCEEEEEEC
Confidence            4689999999998   45776665      6779998654        2222222 34788999999999 889999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee-----------ecccC
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-----------LDEPK  152 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~  152 (392)
                      |++|++||+.+++....+.        |...|++++|+|++++|++|+.||.|++||+++++..           .....
T Consensus        78 D~~v~lWd~~~~~~~~~~~--------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~  149 (902)
T 2oaj_A           78 KDTVYVLSLYSQKVLTTVF--------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAA  149 (902)
T ss_dssp             TCEEEEEETTTCSEEEEEE--------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSS
T ss_pred             cCeEEEEECCCCcEEEEEc--------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccccccccc
Confidence            9999999998876544432        4578999999999999999999999999999987753           22345


Q ss_pred             CCCcEEEEEecCC-CCeEEEEcCCCcEEEEECCCCeeeEEEecC-----------------CCcceEEEEecCCCCcceE
Q 016257          153 AHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRN-----------------SDEKIELCRFSKDGTKPFL  214 (392)
Q Consensus       153 ~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~  214 (392)
                      |.+.|.+++|+|+ +..+++++.|+.| +||+++++.+..+..+                 +...|.+++|+|++..   
T Consensus       150 h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~---  225 (902)
T 2oaj_A          150 RLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH---  225 (902)
T ss_dssp             CCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE---
T ss_pred             CCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE---
Confidence            6679999999996 5789999999999 9999999988887644                 1346999999999987   


Q ss_pred             EEEEEeCCccEEEEEeCCCcee
Q 016257          215 FCTVQRGDKALLAVYDISTWNK  236 (392)
Q Consensus       215 ~~~~~~~~d~~i~v~d~~~~~~  236 (392)
                        +++++.|+.|++||++++++
T Consensus       226 --lasgs~Dg~i~lWd~~~g~~  245 (902)
T 2oaj_A          226 --IITIHEDNSLVFWDANSGHM  245 (902)
T ss_dssp             --EEEEETTCCEEEEETTTCCE
T ss_pred             --EEEEECCCeEEEEECCCCcE
Confidence              89999999999999876543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=9.8e-39  Score=285.69  Aligned_cols=289  Identities=11%  Similarity=0.085  Sum_probs=224.9

Q ss_pred             CceEEEeeCCCCCeeEEEEcCCC-CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEE
Q 016257           53 PLVTYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAG  130 (392)
Q Consensus        53 ~~~~~~~~~h~~~v~~~~~sp~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~  130 (392)
                      ......+.+|.+.|++++|+|++ ++|++|+.|+.|++||+.+.+....+..     ..|...|.+++|+| ++++|+++
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~l~s~  137 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG-----MGPGDAITGMKFNQFNTNQLFVS  137 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC-----CSTTCBEEEEEEETTEEEEEEEE
T ss_pred             cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec-----CCcCCceeEEEeCCCCCCEEEEE
Confidence            44566788999999999999999 8999999999999999987765433321     24788999999999 78999999


Q ss_pred             eCCCcEEEEeCCCCceeecccCCC---CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecC
Q 016257          131 GVDGHLRIMHWPSLRIILDEPKAH---KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK  207 (392)
Q Consensus       131 ~~dg~i~i~d~~~~~~~~~~~~~~---~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  207 (392)
                      +.|+.|++||+++ +....+..+.   ..|.+++|+|++++|++++.|+.|++||+ +++.+..+..+. ..|.+++|+|
T Consensus       138 ~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~-~~v~~~~~~~  214 (383)
T 3ei3_B          138 SIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHK-AKVTHAEFNP  214 (383)
T ss_dssp             ETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSS-SCEEEEEECS
T ss_pred             eCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCC-CcEEEEEECC
Confidence            9999999999986 4444443333   57999999999999999999999999999 567777777654 4899999999


Q ss_pred             CCCcceEEEEEEeCCccEEEEEeCCC----ceeeeeecccCCCcEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeee
Q 016257          208 DGTKPFLFCTVQRGDKALLAVYDIST----WNKIGHKRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWS  282 (392)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~  282 (392)
                      ++...    +++++.|+.|++||+++    +..+..+ .|...+.+++|+| ++++|++++.|+.|++||+++++....+
T Consensus       215 ~~~~~----l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  289 (383)
T 3ei3_B          215 RCDWL----MATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQI  289 (383)
T ss_dssp             SCTTE----EEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEE
T ss_pred             CCCCE----EEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccc
Confidence            99831    78999999999999998    4555444 6889999999999 9999999999999999999987765444


Q ss_pred             eccc----------------cCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceee---eeeeee-eee-eceE
Q 016257          283 KRLH----------------LGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI---YSLLLA-LFL-ASAV  341 (392)
Q Consensus       283 ~~~~----------------~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~~~-~~~-~~~~  341 (392)
                      . .|                ....+..++|+|++++  +++.||.|++|++...........   ...... .+. ....
T Consensus       290 ~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~  366 (383)
T 3ei3_B          290 I-IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDV  366 (383)
T ss_dssp             E-ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSE
T ss_pred             c-cccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccE
Confidence            2 11                0234555777777776  778999999999986654332211   111111 122 3334


Q ss_pred             EEEeeecceeeeecccc
Q 016257          342 VFYIFFENSDSFWNFPV  358 (392)
Q Consensus       342 ~~~~~~d~~i~~W~~~~  358 (392)
                      ++++ .|+.|++|++.+
T Consensus       367 l~s~-sd~~i~iw~~~~  382 (383)
T 3ei3_B          367 LASG-MGFNILIWNRED  382 (383)
T ss_dssp             EEEE-ETTEEEEEECC-
T ss_pred             EEEe-cCCcEEEEecCC
Confidence            5555 499999999864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.6e-38  Score=278.65  Aligned_cols=259  Identities=12%  Similarity=0.079  Sum_probs=215.8

Q ss_pred             EEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEeCC
Q 016257           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVD  133 (392)
Q Consensus        56 ~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d  133 (392)
                      ...+.+|.+.|++++|+|++++|++++.||.|++||+.+...........   ..|...|.+++|+|  ++++|++++.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~d~~~l~s~~~d   80 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW---RAHDSSIVAIDWASPEYGRIIASASYD   80 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEE---ECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceeccee---ccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence            44578999999999999999999999999999999998764332221111   13788999999999  69999999999


Q ss_pred             CcEEEEeCCCC---------ceeecccCCCCcEEEEEecCC--CCeEEEEcCCCcEEEEECCCCeeeEEEe---------
Q 016257          134 GHLRIMHWPSL---------RIILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVAWTFLT---------  193 (392)
Q Consensus       134 g~i~i~d~~~~---------~~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~---------  193 (392)
                      |.|++||++++         +....+..|...|.+++|+|+  +++|++++.|+.|++||+++++.+..+.         
T Consensus        81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred             CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence            99999999876         445566777889999999999  9999999999999999998876544332         


Q ss_pred             ---cCCCcceEEEEecCC---CCcceEEEEEEeCCccEEEEEeCCCcee--eeeecccCCCcEEEEECCCC----CEEEE
Q 016257          194 ---RNSDEKIELCRFSKD---GTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDG----KYLAM  261 (392)
Q Consensus       194 ---~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~s~~~----~~l~~  261 (392)
                         ..+...+.+++|+|+   +..     +++++.++.+.+|+...++.  +..+..|...|++++|+|++    ++|++
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s  235 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPEK-----LAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT  235 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCCE-----EEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred             cccCCcccceeEEEeccCCCCCcE-----EEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Confidence               134557999999997   664     78889999998888877664  56677889999999999998    89999


Q ss_pred             EeCCCcEEEEecCCc----------------------------------------------eeeeeeeccccCcceEEEE
Q 016257          262 GSKDGDICVVDVKKM----------------------------------------------EINHWSKRLHLGTSIALVE  295 (392)
Q Consensus       262 ~~~dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~i~~~~  295 (392)
                      ++.||.|++||++++                                              +.+..+ .+| ...|++++
T Consensus       236 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h-~~~v~~~~  313 (351)
T 3f3f_A          236 GCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH-DDH-NGEVWSVS  313 (351)
T ss_dssp             EETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE-CTT-SSCEEEEE
T ss_pred             EcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE-ecc-cccEEEEE
Confidence            999999999999875                                              333333 567 88999999


Q ss_pred             EeeCCCeEEEEeCCCeEEEEEeecCcccc
Q 016257          296 FCPTQRVVLTASKEWGAMITKLTVPADWK  324 (392)
Q Consensus       296 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  324 (392)
                      |+|++++|++++.||.|++|++.....+.
T Consensus       314 ~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  342 (351)
T 3f3f_A          314 WNLTGTILSSAGDDGKVRLWKATYSNEFK  342 (351)
T ss_dssp             ECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred             EcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence            99999999999999999999999766543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-38  Score=309.25  Aligned_cols=334  Identities=12%  Similarity=0.051  Sum_probs=239.0

Q ss_pred             CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe
Q 016257            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (392)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~   82 (392)
                      ...+|.+++|+| +.   ++++++      .++.|++|+++.        ......+. |.+.|++++|+|++++|++|+
T Consensus        57 ~~~~V~~l~fsp-g~---~L~S~s------~D~~v~lWd~~~--------~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs  117 (902)
T 2oaj_A           57 DRSAIKEMRFVK-GI---YLVVIN------AKDTVYVLSLYS--------QKVLTTVF-VPGKITSIDTDASLDWMLIGL  117 (902)
T ss_dssp             SCCCEEEEEEET-TT---EEEEEE------TTCEEEEEETTT--------CSEEEEEE-CSSCEEEEECCTTCSEEEEEE
T ss_pred             CCCCEEEEEEcC-CC---EEEEEE------CcCeEEEEECCC--------CcEEEEEc-CCCCEEEEEECCCCCEEEEEc
Confidence            356899999999 53   345444      377899999873        23334454 678999999999999999999


Q ss_pred             CCCeEEEEEEeCCccceeecc----cc-CCCCCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeecccCC---
Q 016257           83 TNGGCKLFEVYGGATDINLLA----KK-MPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKA---  153 (392)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~----~~-~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---  153 (392)
                      .||.|++||+.+.+.. .+..    .. .....|.+.|.+++|+|+ +..|++|+.|+.| +||+++++....+..+   
T Consensus       118 ~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~  195 (902)
T 2oaj_A          118 QNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPP  195 (902)
T ss_dssp             TTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCT
T ss_pred             CCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCC
Confidence            9999999999877642 1110    00 122357889999999995 5789999999999 9999998876655433   


Q ss_pred             ---------------CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEE--Ee---cC------------CCcceE
Q 016257          154 ---------------HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF--LT---RN------------SDEKIE  201 (392)
Q Consensus       154 ---------------~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~--~~---~~------------~~~~v~  201 (392)
                                     ...|.+++|+|++++|++++.|++|++||+++++++..  +.   .+            +...|.
T Consensus       196 g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~  275 (902)
T 2oaj_A          196 FAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKIS  275 (902)
T ss_dssp             TCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEE
T ss_pred             cCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCee
Confidence                           35799999999999999999999999999988766542  10   01            112344


Q ss_pred             EEEec----CCCCcc-----------------------------------------------------------------
Q 016257          202 LCRFS----KDGTKP-----------------------------------------------------------------  212 (392)
Q Consensus       202 ~~~~~----~~~~~~-----------------------------------------------------------------  212 (392)
                      +++|+    |++..+                                                                 
T Consensus       276 ~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~s  355 (902)
T 2oaj_A          276 KVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQS  355 (902)
T ss_dssp             EEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSC
T ss_pred             EEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCC
Confidence            44442    110000                                                                 


Q ss_pred             --------------------------------------------------------------------------------
Q 016257          213 --------------------------------------------------------------------------------  212 (392)
Q Consensus       213 --------------------------------------------------------------------------------  212 (392)
                                                                                                      
T Consensus       356 p~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~  435 (902)
T 2oaj_A          356 PYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGV  435 (902)
T ss_dssp             SHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSB
T ss_pred             CCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCc
Confidence                                                                                            


Q ss_pred             ----------eEEEEEEeCCccEEEEEeCCCceeee--ee---------cccCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 016257          213 ----------FLFCTVQRGDKALLAVYDISTWNKIG--HK---------RLLRKPASVLSISLDGKYLAMGSKDGDICVV  271 (392)
Q Consensus       213 ----------~~~~~~~~~~d~~i~v~d~~~~~~~~--~~---------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  271 (392)
                                ---.+++++.|++|++||+.++....  .+         ..|...|.+++|+|++++||+|+.||+|+||
T Consensus       436 ~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lw  515 (902)
T 2oaj_A          436 RTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLF  515 (902)
T ss_dssp             CCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             CCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEE
Confidence                      00124566677777777776653210  01         1567789999999999999999999999999


Q ss_pred             ecCCce---------------------------------------------eeeeeeccccCcceEEEEEeeCCCeEEEE
Q 016257          272 DVKKME---------------------------------------------INHWSKRLHLGTSIALVEFCPTQRVVLTA  306 (392)
Q Consensus       272 d~~~~~---------------------------------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  306 (392)
                      |+.+++                                             ++..+ .+| .+.|++++|+||| +||+|
T Consensus       516 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l-~~h-~~~V~svafSpdG-~lAsg  592 (902)
T 2oaj_A          516 KYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAV-HAN-KGKTSAINNSNIG-FVGIA  592 (902)
T ss_dssp             EEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEE-CCC-SCSEEEEEECBTS-EEEEE
T ss_pred             EecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEE-EcC-CCcEEEEEecCCc-EEEEE
Confidence            998763                                             12223 568 8999999999999 99999


Q ss_pred             eCCCeEEEEEeecCccc--------------cceeeeeeeeeeee---eceEEEEeeecceeeeecc---cccc
Q 016257          307 SKEWGAMITKLTVPADW--------------KEWQIYSLLLALFL---ASAVVFYIFFENSDSFWNF---PVAR  360 (392)
Q Consensus       307 ~~dg~i~iw~~~~~~~~--------------~~~~~~~~~~~~~~---~~~~~~~~~~d~~i~~W~~---~~~~  360 (392)
                      +.|++|++||+..+...              .++.+.+++.....   .+..+++++.|++|++|++   .+|+
T Consensus       593 s~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~  666 (902)
T 2oaj_A          593 YAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK  666 (902)
T ss_dssp             ETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred             eCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence            99999999998654211              13344444111111   1357788889999999999   6665

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.1e-38  Score=283.29  Aligned_cols=289  Identities=13%  Similarity=0.135  Sum_probs=232.6

Q ss_pred             EeeCCCCCeeEEEEcCC----CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC----CCEEEE
Q 016257           58 VFDESEGDPMTIAVNPS----GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD----GSRFAA  129 (392)
Q Consensus        58 ~~~~h~~~v~~~~~sp~----~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~  129 (392)
                      ...+|.++|++++|+|+    ...+++++.++.|++|++.+++....+....  ...|...|.+++|+|+    +++|++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~l~~   90 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYV--DADADENFYTCAWTYDSNTSHPLLAV   90 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEE--CSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecc--ccCCCCcEEEEEeccCCCCCCCEEEE
Confidence            45689999999999984    4567777777899999999776554443222  1236688999999998    679999


Q ss_pred             EeCCCcEEEEeCCCCceeecccCCCCcEEEEEecC-CCCeEEEEcCCCcEEEEECCCCeeeEEEe--cCCCcceEEEEec
Q 016257          130 GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRFS  206 (392)
Q Consensus       130 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~--~~~~~~v~~~~~~  206 (392)
                      |+.||.|++||+++++.+..+..|...|.+++|+| ++++|++++.||.|++||+++++.+..+.  ..+...|.+++|+
T Consensus        91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  170 (366)
T 3k26_A           91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD  170 (366)
T ss_dssp             EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred             ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence            99999999999999999888888888999999999 89999999999999999999999888873  2455689999999


Q ss_pred             CCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc----------------------------cCCCcEEEEECCCCCE
Q 016257          207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL----------------------------LRKPASVLSISLDGKY  258 (392)
Q Consensus       207 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~----------------------------~~~~v~~~~~s~~~~~  258 (392)
                      |++..     +++++.|+.|++||+++++....+..                            |...|.+++|+  +++
T Consensus       171 ~~~~~-----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~  243 (366)
T 3k26_A          171 LLGEK-----IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL  243 (366)
T ss_dssp             TTSSE-----EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE
T ss_pred             CCCCE-----EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE
Confidence            99987     78999999999999998765544333                            88899999998  779


Q ss_pred             EEEEeCCCcEEEEecCCcee--------------eeeeeccccCcceEEEEEeeC--CCeEEEEeCCCeEEEEEeecCcc
Q 016257          259 LAMGSKDGDICVVDVKKMEI--------------NHWSKRLHLGTSIALVEFCPT--QRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       259 l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                      |++++.|+.|++||+.+++.              ...+ ..| ...|++++|+|+  +++|++++.||.|++|++.....
T Consensus       244 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~  321 (366)
T 3k26_A          244 ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF-DYS-QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP  321 (366)
T ss_dssp             EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE-ECS-SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred             EEEEecCCEEEEEeCCCccccccccccCCcchheeccc-ccc-CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence            99999999999999987643              3333 467 788999999999  99999999999999999987643


Q ss_pred             cc----ceee---eeeee--eeeeeceEEEEeeecceeeeeccc
Q 016257          323 WK----EWQI---YSLLL--ALFLASAVVFYIFFENSDSFWNFP  357 (392)
Q Consensus       323 ~~----~~~~---~~~~~--~~~~~~~~~~~~~~d~~i~~W~~~  357 (392)
                      ..    .+..   ...+.  ........+++++.|+.|++||+.
T Consensus       322 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          322 HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            32    1110   01111  111234578888899999999975

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.5e-38  Score=299.32  Aligned_cols=320  Identities=13%  Similarity=0.057  Sum_probs=255.0

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCC-eeEEEEcC--CCCeEEE
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-PMTIAVNP--SGDDFVC   80 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~sp--~~~~l~~   80 (392)
                      .+.|.+++|+|+++.   +++|+       ++.+.+|+++....    .......+.+|.+. |++++|+|  ++++|++
T Consensus        18 ~~~v~~~~~spdg~~---l~~~~-------~~~v~v~~~~~~~~----~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s   83 (615)
T 1pgu_A           18 RNFTTHLSYDPTTNA---IAYPC-------GKSAFVRCLDDGDS----KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCS   83 (615)
T ss_dssp             TTCCCCCEEETTTTE---EEEEE-------TTEEEEEECCSSCC----SSCSEEEECTTTTSCEEEEEECSSTTCCEEEE
T ss_pred             cCceeEEEECCCCCE---EEEec-------CCeEEEEECCCCCC----ccccceEEecCCCceEEEEEECcCCCCCEEEE
Confidence            468999999999854   44332       45688998873211    11455678999999 99999999  9999999


Q ss_pred             EeCCCeEEEEEEeCC--------ccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC----CcEEEEeCCCCceee
Q 016257           81 STTNGGCKLFEVYGG--------ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRIMHWPSLRIIL  148 (392)
Q Consensus        81 ~~~d~~i~iw~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~  148 (392)
                      ++.||.|++||+.++        +....+.       .|...|.+++|+|++++|++++.+    +.|++||  .++...
T Consensus        84 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~  154 (615)
T 1pgu_A           84 GDESGKVIVWGWTFDKESNSVEVNVKSEFQ-------VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG  154 (615)
T ss_dssp             EETTSEEEEEEEEEEGGGTEEEEEEEEEEE-------CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE
T ss_pred             ecCCCEEEEEeCCCCcccccccccccchhh-------cccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce
Confidence            999999999999754        2111111       267899999999999999999987    6788887  567777


Q ss_pred             cccCCCCcEEEEEecCCCC-eEEEEcCCCcEEEEECCCCeeeEEEecCCCc---ceEEEEecCC-CCcceEEEEEEeCCc
Q 016257          149 DEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDE---KIELCRFSKD-GTKPFLFCTVQRGDK  223 (392)
Q Consensus       149 ~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~~~~~~~~~~~~d  223 (392)
                      .+..|...|.+++|+|+++ .+++++.|+.|++||+++++.+..+..+ ..   .|.+++|+|+ +..     +++++.|
T Consensus       155 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~-----l~~~~~d  228 (615)
T 1pgu_A          155 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH-HKQGSFVRDVEFSPDSGEF-----VITVGSD  228 (615)
T ss_dssp             ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS-SCTTCCEEEEEECSTTCCE-----EEEEETT
T ss_pred             eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeeccc-CCCCceEEEEEECCCCCCE-----EEEEeCC
Confidence            7888888999999999998 7999999999999999999998888765 34   6999999999 886     7889999


Q ss_pred             cEEEEEeCCCceeeeee-c---ccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecc---ccCcceEEEEE
Q 016257          224 ALLAVYDISTWNKIGHK-R---LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL---HLGTSIALVEF  296 (392)
Q Consensus       224 ~~i~v~d~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~i~~~~~  296 (392)
                      +.|++||+++++.+..+ .   .|...|.+++|+ ++++|++++.|+.|++||+++++....+...   + ...+.++.|
T Consensus       229 g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~  306 (615)
T 1pgu_A          229 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL-GNQQVGVVA  306 (615)
T ss_dssp             CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCG-GGCEEEEEE
T ss_pred             CeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcc-cCceeEEEe
Confidence            99999999999988888 5   789999999999 9999999999999999999999887766422   2 467888888


Q ss_pred             eeCCCeEEEEeCCCeEEEEEeecCcccccee-eeeeeeeeeeeceEEEEeeecceeeeeccc
Q 016257          297 CPTQRVVLTASKEWGAMITKLTVPADWKEWQ-IYSLLLALFLASAVVFYIFFENSDSFWNFP  357 (392)
Q Consensus       297 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~  357 (392)
                      + ++.++++++.||.|++|++.......... ....+..... .. +++++.|+.|++|++.
T Consensus       307 ~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~  365 (615)
T 1pgu_A          307 T-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSS  365 (615)
T ss_dssp             E-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTT
T ss_pred             C-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEch
Confidence            6 88999999999999999987543322111 0001111122 22 6777788888888876

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-38  Score=271.35  Aligned_cols=289  Identities=11%  Similarity=0.108  Sum_probs=232.9

Q ss_pred             CCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe
Q 016257           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (392)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  131 (392)
                      .......+.+|.+.|++++| |++++|++++.||.|++||+.+.+....+.       .|...|.+++|+|++++|++++
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~   78 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVY-------TGQGFLNSVCYDSEKELLLFGG   78 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEE-------ECSSCEEEEEEETTTTEEEEEE
T ss_pred             cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEee-------cCCccEEEEEECCCCCEEEEec
Confidence            34566788999999999999 999999999999999999998776444433       2578999999999999999999


Q ss_pred             CCCcEEEEeCCCC---ceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecC-
Q 016257          132 VDGHLRIMHWPSL---RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK-  207 (392)
Q Consensus       132 ~dg~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-  207 (392)
                      .|+.+++|++...   +....+..|...|.++.|  +++++++++.|+.|++||  .++....+..+ ...+.+++|.| 
T Consensus        79 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~-~~~v~~~~~~~~  153 (313)
T 3odt_A           79 KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAH-NASVWDAKVVSF  153 (313)
T ss_dssp             TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECC-SSCEEEEEEEET
T ss_pred             CCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccC-CCceeEEEEccC
Confidence            9999999998654   445566677789999999  577999999999999999  56666676655 45799999998 


Q ss_pred             CCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc-cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccc
Q 016257          208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH  286 (392)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  286 (392)
                      ++..     +++++.|+.|++||..  +....+.. +...+.+++|+|++. +++++.||.|++||+++++....+ ..|
T Consensus       154 ~~~~-----l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~-~~~  224 (313)
T 3odt_A          154 SENK-----FLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTY-EGH  224 (313)
T ss_dssp             TTTE-----EEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEE-ECC
T ss_pred             CCCE-----EEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhh-hcC
Confidence            6775     7889999999999943  45555555 788999999999998 999999999999999999888776 578


Q ss_pred             cCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeeee-eee-eeeeeceEEEEeeecceeeeecccccccccC
Q 016257          287 LGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYS-LLL-ALFLASAVVFYIFFENSDSFWNFPVARNQHG  364 (392)
Q Consensus       287 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~  364 (392)
                       ...|++++|+|++ .|++++.||.|++|++............. .+. ..+...+.+++++.|+.|++|++..++....
T Consensus       225 -~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          225 -ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             -SSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGGCCC-
T ss_pred             -CceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCceeeh
Confidence             8999999999999 68999999999999998665433221110 111 1122233467788999999999998775543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=5.8e-39  Score=327.93  Aligned_cols=346  Identities=15%  Similarity=0.151  Sum_probs=275.5

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .++|.+++|+|++.   ++++|+.      ++.+++|+++        .......+.+|.+.|.+++|+|++++|++++.
T Consensus       840 ~~~v~~~~~sp~~~---~l~~~~~------dg~v~vwd~~--------~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~  902 (1249)
T 3sfz_A          840 HSTIQYCDFSPYDH---LAVIALS------QYCVELWNID--------SRLKVADCRGHLSWVHGVMFSPDGSSFLTASD  902 (1249)
T ss_dssp             SSCCCEEEECSSTT---EEEEECS------SSCEEEEETT--------TTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCceEEEEEcCCCC---EEEEEeC------CCeEEEEEcC--------CCceeeecCCCccceEEEEECCCCCEEEEEeC
Confidence            46899999999884   4555554      5669999887        44556778899999999999999999999999


Q ss_pred             CCeEEEEEEeCCcccee----------------------------ecccc--CCCCCCCCCeEEEEecCCCCEEEEEeCC
Q 016257           84 NGGCKLFEVYGGATDIN----------------------------LLAKK--MPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~----------------------------~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (392)
                      |+.|++|++.+......                            .....  .....+...+.+++|+|+++++++|+.+
T Consensus       903 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~  982 (1249)
T 3sfz_A          903 DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDED  982 (1249)
T ss_dssp             TSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETT
T ss_pred             CCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCC
Confidence            99999999754211000                            00000  0001134679999999999999999999


Q ss_pred             CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcce
Q 016257          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (392)
Q Consensus       134 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (392)
                      |.|++|++.+++.......|...|.+++|+|++++|++++.|+.|++||+.+++.....  .+...+.+++|+|++.   
T Consensus       983 g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~--- 1057 (1249)
T 3sfz_A          983 GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ--AHQETVKDFRLLQDSR--- 1057 (1249)
T ss_dssp             SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCB--CCSSCEEEEEECSSSE---
T ss_pred             CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEe--cCCCcEEEEEEcCCCc---
Confidence            99999999999988888888889999999999999999999999999999998776432  3456899999999876   


Q ss_pred             EEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEE
Q 016257          214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL  293 (392)
Q Consensus       214 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~  293 (392)
                         +++++.|+.|++||+.+++....+..|...|++++|+|+++++++++.|+.|++||+.+++....+ .+| ...|++
T Consensus      1058 ---l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l-~~h-~~~v~~ 1132 (1249)
T 3sfz_A         1058 ---LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL-KGH-NGCVRC 1132 (1249)
T ss_dssp             ---EEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCC-CCC-SSCEEE
T ss_pred             ---EEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeee-ccC-CCcEEE
Confidence               688899999999999999999999999999999999999999999999999999999999877766 578 889999


Q ss_pred             EEEeeCCCeEEEEeCCCeEEEEEeecCccccce-----------------eeeeeeeeeeeeceEEEEeeecceeeeecc
Q 016257          294 VEFCPTQRVVLTASKEWGAMITKLTVPADWKEW-----------------QIYSLLLALFLASAVVFYIFFENSDSFWNF  356 (392)
Q Consensus       294 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~  356 (392)
                      ++|+|+|++|++++.||.|++|++..+......                 .+.+++.     ...++++  ++.+++||+
T Consensus      1133 ~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d-----g~~l~s~--~g~v~vwd~ 1205 (1249)
T 3sfz_A         1133 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPD-----SKTLVSA--GGYLKWWNV 1205 (1249)
T ss_dssp             EEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTT-----SSCEEEE--SSSEEEBCS
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCC-----CCEEEEC--CCeEEEEEC
Confidence            999999999999999999999999866543321                 2222222     2233333  489999999


Q ss_pred             cccccccCCC-CcccccCCCCCccccce
Q 016257          357 PVARNQHGGP-KIESILRDPQSSDDQNM  383 (392)
Q Consensus       357 ~~~~~~~~~p-~~~~~~~~~~~~~~~~~  383 (392)
                      .+++.+.... ...++.....+.++..+
T Consensus      1206 ~~g~~~~~~~~~~~~i~~~~~s~dg~~l 1233 (1249)
T 3sfz_A         1206 ATGDSSQTFYTNGTNLKKIHVSPDFRTY 1233 (1249)
T ss_dssp             SSCBCCCCCCCSSCCCCCCEECSSSCCE
T ss_pred             CCCceeeeeeccCCcccEEEECCCCCEE
Confidence            9988765543 33344444444444443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.8e-38  Score=288.49  Aligned_cols=298  Identities=13%  Similarity=0.133  Sum_probs=228.0

Q ss_pred             CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCcc---ccCCceEEEeeCCC------------CCee
Q 016257            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSV---YTSPLVTYVFDESE------------GDPM   67 (392)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~~~~~h~------------~~v~   67 (392)
                      ...+|+|++|+|++.   ++++|+.      ++.|++|+++......   .........+.+|.            +.|+
T Consensus        27 ~~~~V~~v~~s~~g~---~la~g~~------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~   97 (447)
T 3dw8_B           27 EADIISTVEFNHSGE---LLATGDK------GGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN   97 (447)
T ss_dssp             GGGSEEEEEECSSSS---EEEEEET------TSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCC
T ss_pred             ccCcEEEEEECCCCC---EEEEEcC------CCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceE
Confidence            357999999999884   5665554      6779999997543110   01222456788998            8899


Q ss_pred             EEEEcCCC--CeEEEEeCCCeEEEEEEeCCccceeecc---------------------------------ccCCCCCCC
Q 016257           68 TIAVNPSG--DDFVCSTTNGGCKLFEVYGGATDINLLA---------------------------------KKMPPLQDA  112 (392)
Q Consensus        68 ~~~~sp~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~---------------------------------~~~~~~~~~  112 (392)
                      +++|+|++  ..|++++.|+.|++|++...+.......                                 .......|.
T Consensus        98 ~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  177 (447)
T 3dw8_B           98 KIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT  177 (447)
T ss_dssp             EEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS
T ss_pred             EEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC
Confidence            99999998  7999999999999999987443110000                                 000013488


Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-eee-------cccCCCCcEEEEEecCCC-CeEEEEcCCCcEEEEEC
Q 016257          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IIL-------DEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKT  183 (392)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~-------~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~  183 (392)
                      ..|.+++|+|++++|++| .|+.|++||+++.. ...       .+..|...|.+++|+|++ ++|++++.||.|++||+
T Consensus       178 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  256 (447)
T 3dw8_B          178 YHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM  256 (447)
T ss_dssp             SCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             cceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence            899999999999999998 79999999998443 332       245677789999999998 99999999999999999


Q ss_pred             CCCee----eEEEecCCC-----------cceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC-ceeeeeecccCCC-
Q 016257          184 EDGVA----WTFLTRNSD-----------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKRLLRKP-  246 (392)
Q Consensus       184 ~~~~~----~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~-  246 (392)
                      ++++.    ...+..+..           ..|.+++|+|++..     +++++. +.|++||+++ ++++..+..|... 
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-----l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~  330 (447)
T 3dw8_B          257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-----MMTRDY-LSVKVWDLNMENRPVETYQVHEYLR  330 (447)
T ss_dssp             TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-----EEEEES-SEEEEEETTCCSSCSCCEESCGGGT
T ss_pred             cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCE-----EEEeeC-CeEEEEeCCCCccccceeecccccc
Confidence            98876    666665543           27999999999996     677777 9999999997 7777777766431 


Q ss_pred             --------------cEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec----------------------------
Q 016257          247 --------------ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR----------------------------  284 (392)
Q Consensus       247 --------------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------------  284 (392)
                                    +..++|+|++++|++|+.||.|++||+.+++.......                            
T Consensus       331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (447)
T 3dw8_B          331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISV  410 (447)
T ss_dssp             TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEG
T ss_pred             ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccc
Confidence                          23489999999999999999999999998876542110                            


Q ss_pred             ---cccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          285 ---LHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       285 ---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                         .+ ...|..++|+|++.+|++++.+ .+++|.-+
T Consensus       411 ~~~~~-~~~i~~~~~~p~~~~la~~~~~-~~~~~~~~  445 (447)
T 3dw8_B          411 DSLDF-NKKILHTAWHPKENIIAVATTN-NLYIFQDK  445 (447)
T ss_dssp             GGCCT-TSCCCEEEECSSSSEEEEECSS-CEEEEECC
T ss_pred             ccccc-CCceeEEEECCCCCEEEEEecc-eeeeeccc
Confidence               12 4578999999999999999887 47777643

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-39  Score=291.16  Aligned_cols=262  Identities=8%  Similarity=0.067  Sum_probs=211.7

Q ss_pred             CceEEEe-eCCCCCeeEEEEcC-CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEE
Q 016257           53 PLVTYVF-DESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG  130 (392)
Q Consensus        53 ~~~~~~~-~~h~~~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  130 (392)
                      ......+ .+|.+.|++++|+| ++++|++|+.||.|++||+.+.+......  ......|...|.+++|+|++++|+++
T Consensus        52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~  129 (437)
T 3gre_A           52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS--SSLTYDCSSTVTQITMIPNFDAFAVS  129 (437)
T ss_dssp             CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS--CSEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc--eeeeccCCCCEEEEEEeCCCCEEEEE
Confidence            3445566 88999999999999 99999999999999999987621110000  01111378899999999999999999


Q ss_pred             eCCCcEEEEeCC---CCceeeccc----------C--CCCcEEEEE--ecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe
Q 016257          131 GVDGHLRIMHWP---SLRIILDEP----------K--AHKSVLDMD--FSLDSEFLATTSTDGSARIWKTEDGVAWTFLT  193 (392)
Q Consensus       131 ~~dg~i~i~d~~---~~~~~~~~~----------~--~~~~i~~i~--~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  193 (392)
                      +.||.|++||++   +++......          .  +...+.++.  +++++.+|++++.|+.|++||+++++.+..+.
T Consensus       130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  209 (437)
T 3gre_A          130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE  209 (437)
T ss_dssp             ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence            999999999994   444332221          1  334566666  56789999999999999999999999999988


Q ss_pred             cC-CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec-ccCCCcEEEEECC----CCCEEEEEeCCCc
Q 016257          194 RN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISL----DGKYLAMGSKDGD  267 (392)
Q Consensus       194 ~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~----~~~~l~~~~~dg~  267 (392)
                      .+ +...|.+++|+|++..     +++++.|+.|++||+++++.+..+. .+...|++++|+|    ++.+|++|+.||.
T Consensus       210 ~~~h~~~v~~~~~s~~~~~-----l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~  284 (437)
T 3gre_A          210 NSPRHGAVSSICIDEECCV-----LILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF  284 (437)
T ss_dssp             CCGGGCCEEEEEECTTSCE-----EEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE
T ss_pred             cCCCCCceEEEEECCCCCE-----EEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc
Confidence            73 4558999999999987     8999999999999999998887775 6677899996654    6789999999999


Q ss_pred             EEEEecCCceeeeeeec-------------------------cccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257          268 ICVVDVKKMEINHWSKR-------------------------LHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       268 i~iwd~~~~~~~~~~~~-------------------------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                      |++||+++++....+..                         .| ...|++++|+ ++++|++|+.||.|++|++..+..
T Consensus       285 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~  362 (437)
T 3gre_A          285 LTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS-LNALSTISVS-NDKILLTDEATSSIVMFSLNELSS  362 (437)
T ss_dssp             EEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS-GGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred             EEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc-CCceEEEEEC-CceEEEecCCCCeEEEEECCCccc
Confidence            99999999887665531                         15 6679999999 889999999999999999986654


Q ss_pred             c
Q 016257          323 W  323 (392)
Q Consensus       323 ~  323 (392)
                      .
T Consensus       363 ~  363 (437)
T 3gre_A          363 S  363 (437)
T ss_dssp             C
T ss_pred             c
Confidence            3

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=8.9e-38  Score=281.52  Aligned_cols=330  Identities=14%  Similarity=0.080  Sum_probs=228.6

Q ss_pred             CceeeeecCCC-CCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEE-----EeeCCCCCeeEEEEcC-CCC
Q 016257            4 GGTVTCGSWIK-RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTY-----VFDESEGDPMTIAVNP-SGD   76 (392)
Q Consensus         4 ~~~v~~~~w~~-~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-----~~~~h~~~v~~~~~sp-~~~   76 (392)
                      .++|+|++|+| ++   .++++|+.      ++.|++|+++..............     ...+|...|.+++|+| +++
T Consensus        43 ~~~v~~~~~s~~~~---~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  113 (408)
T 4a11_B           43 GGGINTLDIEPVEG---RYMLSGGS------DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG  113 (408)
T ss_dssp             SSCEEEEEECTTTC---CEEEEEET------TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred             CCcEEEEEEecCCC---CEEEEEcC------CCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence            57899999999 76   34665544      677999998744322111000000     1135999999999999 778


Q ss_pred             eEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC---CCEEEEEeCCCcEEEEeCCCCceeecccCC
Q 016257           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (392)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  153 (392)
                      +|++++.|+.|++||+.+++....+.        +...+.++.|++.   +.++++++.|+.|++||+++++....+..|
T Consensus       114 ~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~  185 (408)
T 4a11_B          114 MFTSSSFDKTLKVWDTNTLQTADVFN--------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGH  185 (408)
T ss_dssp             CEEEEETTSEEEEEETTTTEEEEEEE--------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCC
T ss_pred             EEEEEeCCCeEEEeeCCCCccceecc--------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCC
Confidence            99999999999999998876544332        4568899999884   459999999999999999999888888888


Q ss_pred             CCcEEEEEecCCCCe-EEEEcCCCcEEEEECCCCe-eeEEEe--------------cCCCcceEEEEecCCCCcceEEEE
Q 016257          154 HKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGV-AWTFLT--------------RNSDEKIELCRFSKDGTKPFLFCT  217 (392)
Q Consensus       154 ~~~i~~i~~~~~~~~-l~~~~~d~~i~vwd~~~~~-~~~~~~--------------~~~~~~v~~~~~~~~~~~~~~~~~  217 (392)
                      ...|.+++|+|+++. +++++.||.|++||++++. ....+.              ..+...|.+++|+|++..     +
T Consensus       186 ~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----l  260 (408)
T 4a11_B          186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH-----L  260 (408)
T ss_dssp             CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE-----E
T ss_pred             CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE-----E
Confidence            889999999999984 8899999999999998765 333331              234567999999999987     7


Q ss_pred             EEeCCccEEEEEeCCCceeeeeeccc-----CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceE
Q 016257          218 VQRGDKALLAVYDISTWNKIGHKRLL-----RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA  292 (392)
Q Consensus       218 ~~~~~d~~i~v~d~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~  292 (392)
                      ++++.|+.|++||+++++.......+     ...+........+..+++++.|+.|++||+.+++.+..+ .+| ...|+
T Consensus       261 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~-~~~v~  338 (408)
T 4a11_B          261 LTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML-KGH-YKTVD  338 (408)
T ss_dssp             EEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE-CCC-SSCEE
T ss_pred             EEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee-ccC-CCeEE
Confidence            89999999999999988765443322     112222222334556677788999999999999988877 578 89999


Q ss_pred             EEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeeeeeeeeeee-eceEEEEeeecceeeeeccc
Q 016257          293 LVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFL-ASAVVFYIFFENSDSFWNFP  357 (392)
Q Consensus       293 ~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~W~~~  357 (392)
                      +++|+|++++|++++.||.|++|++...+................ ..........++.+++|+.+
T Consensus       339 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          339 CCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTKSQLNPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEEECC---------------------------------------
T ss_pred             EEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEeccccccccceeecccCccCceeecCCc
Confidence            999999999999999999999999997765443222111111111 12223344568899999865

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-37  Score=277.50  Aligned_cols=256  Identities=13%  Similarity=0.133  Sum_probs=212.6

Q ss_pred             EEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC--CCEEEEEeCC
Q 016257           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVD  133 (392)
Q Consensus        56 ~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d  133 (392)
                      ...+.+|.+.|++++|+|++++|++|+.||.|++|++...........     ..|...|.+++|+++  +++|++++.|
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~l~s~~~d   78 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-----TGHEGPVWRVDWAHPKFGTILASCSYD   78 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe-----cCCCCcEEEEEeCCCCCCCEEEEeccC
Confidence            345789999999999999999999999999999999984432111111     137789999999987  9999999999


Q ss_pred             CcEEEEeCCCCc--eeecccCCCCcEEEEEecCC--CCeEEEEcCCCcEEEEECCCCee--eEEEecCCCcceEEEEecC
Q 016257          134 GHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSK  207 (392)
Q Consensus       134 g~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~  207 (392)
                      |.|++||+++++  .......|...|.+++|+|+  +++|++++.|+.|++||++.+..  ...+. .+...|.+++|+|
T Consensus        79 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~v~~~~~~~  157 (379)
T 3jrp_A           79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAP  157 (379)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE-CCTTCEEEEEECC
T ss_pred             CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec-CCCCceEEEEEcC
Confidence            999999999886  56666677789999999999  99999999999999999988743  23333 3455899999999


Q ss_pred             -------------CCCcceEEEEEEeCCccEEEEEeCCCce----eeeeecccCCCcEEEEECCC---CCEEEEEeCCCc
Q 016257          208 -------------DGTKPFLFCTVQRGDKALLAVYDISTWN----KIGHKRLLRKPASVLSISLD---GKYLAMGSKDGD  267 (392)
Q Consensus       208 -------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~----~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~  267 (392)
                                   ++..     +++++.|+.|++||+++++    ....+..|...|.+++|+|+   +++|++++.||.
T Consensus       158 ~~~~~~~~~~~~~~~~~-----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~  232 (379)
T 3jrp_A          158 ATIEEDGEHNGTKESRK-----FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT  232 (379)
T ss_dssp             CC----------CTTCE-----EEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred             ccccccccccCCCCCCE-----EEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE
Confidence                         5675     7899999999999998654    44567778999999999999   899999999999


Q ss_pred             EEEEecCCce----eeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccc
Q 016257          268 ICVVDVKKME----INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADW  323 (392)
Q Consensus       268 i~iwd~~~~~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  323 (392)
                      |++||+++++    ........| ...|++++|+|++++|++++.||.|++|++.....+
T Consensus       233 i~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~  291 (379)
T 3jrp_A          233 CIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW  291 (379)
T ss_dssp             EEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred             EEEEeCCCCCccceeeeeccccC-CCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence            9999999863    222222336 789999999999999999999999999999865443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1e-36  Score=265.30  Aligned_cols=283  Identities=11%  Similarity=0.116  Sum_probs=227.7

Q ss_pred             eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 016257            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (392)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~   86 (392)
                      ..+++|++++    ++++       +.|++|++|+.+..      .......+.+|...|++++|+|++++|++|+.|++
T Consensus        28 ~~~l~WS~~~----~lAv-------g~D~tV~iWd~~tg------~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~   90 (318)
T 4ggc_A           28 LNLVDWSSGN----VLAV-------ALDNSVYLWSASSG------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE   90 (318)
T ss_dssp             CBCEEECTTS----EEEE-------EETTEEEEEETTTC------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSE
T ss_pred             ceEEEECCCC----EEEE-------EeCCEEEEEECCCC------CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCc
Confidence            5679999876    4553       24678999987622      12223345678899999999999999999999999


Q ss_pred             EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCce-eecccCCCCcEEEEEecCC
Q 016257           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-ILDEPKAHKSVLDMDFSLD  165 (392)
Q Consensus        87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~i~~~~~  165 (392)
                      |++|++++++....+..       |...+.++  ++++..+++++.++.+++|+...... ...+..|...+..+.++++
T Consensus        91 v~iw~~~~~~~~~~~~~-------h~~~~~~~--~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (318)
T 4ggc_A           91 VQLWDVQQQKRLRNMTS-------HSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD  161 (318)
T ss_dssp             EEEEETTTTEEEEEEEC-------CSSCEEEE--EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred             EEEeecCCceeEEEecC-------ccceEEEe--ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCC
Confidence            99999998876555432       55556554  45677999999999999999887644 4455677779999999999


Q ss_pred             CCeEEEEcCCCcEEEEECCCCeeeE---EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc
Q 016257          166 SEFLATTSTDGSARIWKTEDGVAWT---FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (392)
Q Consensus       166 ~~~l~~~~~d~~i~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~  242 (392)
                      +++|++++.|+.|++||+++++...   .....+...+.+++++|++...+  .+++++.++.|++||.+....... ..
T Consensus       162 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~i~lwd~~~~~~~~~-~~  238 (318)
T 4ggc_A          162 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL--ATGGGTSDRHIRIWNVCSGACLSA-VD  238 (318)
T ss_dssp             SSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEE--EEEECTTTCEEEEEETTTCCEEEE-EE
T ss_pred             CCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEE--EEEecCCCCEEEEEeccccccccc-cc
Confidence            9999999999999999998765321   22233455799999999988633  256788999999999998776544 44


Q ss_pred             cCCCcEEEEECCCCCEEEEEe--CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257          243 LRKPASVLSISLDGKYLAMGS--KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      +...+..+.|+|++..+++++  .|+.|++||+++++.+..+ .+| .+.|++++|+|+|++|++|+.||+|+||++...
T Consensus       239 ~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l-~gH-~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          239 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KGH-TSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE-CCC-SSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE-cCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            567899999999999887755  7999999999999998877 689 999999999999999999999999999998643

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.8e-38  Score=288.65  Aligned_cols=293  Identities=12%  Similarity=0.077  Sum_probs=213.9

Q ss_pred             EEeeCCCCCeeEEEEcC-CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCC
Q 016257           57 YVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDG  134 (392)
Q Consensus        57 ~~~~~h~~~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg  134 (392)
                      ....+|...|++++|+| ++++||+|+.||.|+|||+.+.+.....     ....|.+.|++++|+| ++++|++++.||
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-----~~~gH~~~V~~l~f~p~~~~~l~s~s~D~  187 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-----KGIGAGGSITGLKFNPLNTNQFYASSMEG  187 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-----CCCSSSCCCCEEEECSSCTTEEEEECSSS
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-----EccCCCCCEEEEEEeCCCCCEEEEEeCCC
Confidence            35667899999999999 5679999999999999999876543222     1234889999999998 789999999999


Q ss_pred             cEEEEeCCCCceeecccCC--CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcc
Q 016257          135 HLRIMHWPSLRIILDEPKA--HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (392)
Q Consensus       135 ~i~i~d~~~~~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (392)
                      +|++||++++........+  ...+.+++|+|++++|++|+.||.|++||++. +.+..+..| ...|.+++|+|++..+
T Consensus       188 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h-~~~v~~v~~~p~~~~~  265 (435)
T 4e54_B          188 TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMH-KKKVTHVALNPCCDWF  265 (435)
T ss_dssp             CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCC-SSCEEEEEECTTCSSE
T ss_pred             EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecc-cceEEeeeecCCCceE
Confidence            9999999876543222222  23578999999999999999999999999964 555566554 4589999999998752


Q ss_pred             eEEEEEEeCCccEEEEEeCCCceeeee---ecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecccc--
Q 016257          213 FLFCTVQRGDKALLAVYDISTWNKIGH---KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL--  287 (392)
Q Consensus       213 ~~~~~~~~~~d~~i~v~d~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--  287 (392)
                          +++++.|+.|++||+++.+....   ...|...|++++|+|+|++|++++.||.|++||+.+++....+. .|.  
T Consensus       266 ----~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~-~~~~~  340 (435)
T 4e54_B          266 ----LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI-PHPHR  340 (435)
T ss_dssp             ----EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC-CCCCC
T ss_pred             ----EEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe-ccccc
Confidence                67889999999999988664433   35688899999999999999999999999999999887655442 220  


Q ss_pred             ---CcceEEEEEeeCCCeEEEEe------------CCCeEEEEEeecCccccceee--eeeee--eeeeeceEEEEeeec
Q 016257          288 ---GTSIALVEFCPTQRVVLTAS------------KEWGAMITKLTVPADWKEWQI--YSLLL--ALFLASAVVFYIFFE  348 (392)
Q Consensus       288 ---~~~i~~~~~s~~~~~l~~~~------------~dg~i~iw~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~d  348 (392)
                         ...+....|+|++..+++++            .++.|++|+...+........  ...+.  ..+...+.+++++.|
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d  420 (435)
T 4e54_B          341 HFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMG  420 (435)
T ss_dssp             CCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECS
T ss_pred             ccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcC
Confidence               11234556777777776664            235799999876543221100  00000  011222333445568


Q ss_pred             ceeeeeccccccc
Q 016257          349 NSDSFWNFPVARN  361 (392)
Q Consensus       349 ~~i~~W~~~~~~~  361 (392)
                      +.|++|++..++.
T Consensus       421 ~~i~iW~~~~gk~  433 (435)
T 4e54_B          421 YHILIWSQQEART  433 (435)
T ss_dssp             SEEEECCCC----
T ss_pred             CcEEEEECCcCee
Confidence            9999999988764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.3e-36  Score=278.95  Aligned_cols=277  Identities=14%  Similarity=0.208  Sum_probs=232.6

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCC
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~   85 (392)
                      .+.|++++++     ++++|+.      ++.|++|++.        .......+.+|.+.|.+++|+|++ .|++|+.||
T Consensus       124 v~~~~~~~~~-----~l~sgs~------dg~i~vwd~~--------~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg  183 (464)
T 3v7d_B          124 VITCLQFEDN-----YVITGAD------DKMIRVYDSI--------NKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDR  183 (464)
T ss_dssp             CEEEEEEETT-----EEEEEET------TSCEEEEETT--------TTEEEEEECCCSSCEEEEEECSTT-EEEEEETTS
T ss_pred             cEEEEEECCC-----EEEEEcC------CCcEEEEECC--------CCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCC
Confidence            3577777542     4555544      6779999876        445667788999999999999988 999999999


Q ss_pred             eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEec--CCCCEEEEEeCCCcEEEEeCCCCce-----------------
Q 016257           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS--VDGSRFAAGGVDGHLRIMHWPSLRI-----------------  146 (392)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~i~d~~~~~~-----------------  146 (392)
                      +|++||+.+++....+.       .|...|.+++|+  +++++|++++.|+.|++||+++++.                 
T Consensus       184 ~i~vwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  256 (464)
T 3v7d_B          184 TVRVWDIKKGCCTHVFE-------GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP  256 (464)
T ss_dssp             CEEEEETTTTEEEEEEC-------CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCG
T ss_pred             CEEEEECCCCcEEEEEC-------CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeecc
Confidence            99999998877554432       377899999998  5778999999999999999987653                 


Q ss_pred             ------eecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEe
Q 016257          147 ------ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (392)
Q Consensus       147 ------~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (392)
                            ......|...+.++  +++++++++++.|+.|++||+++++.+..+..+. ..+.+++|+|++..     ++++
T Consensus       257 ~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~-----l~sg  328 (464)
T 3v7d_B          257 EENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT-DRIYSTIYDHERKR-----CISA  328 (464)
T ss_dssp             GGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEEETTTTE-----EEEE
T ss_pred             CCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-CCEEEEEEcCCCCE-----EEEE
Confidence                  22344555677766  6778999999999999999999999998887654 47999999999997     7999


Q ss_pred             CCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCC
Q 016257          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (392)
Q Consensus       221 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  300 (392)
                      +.|+.|++||+++++.+..+..|...+.+++|+  +++|++++.||.|++||+.+++.....  .+ ...+..++|++++
T Consensus       329 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~--~~-~~~~~~~~~~~~~  403 (464)
T 3v7d_B          329 SMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY--HH-TNLSAITTFYVSD  403 (464)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE--EC-TTCCCEEEEEECS
T ss_pred             eCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee--cC-CCCccEEEEEeCC
Confidence            999999999999999999999999999999997  579999999999999999988766554  24 6678889999999


Q ss_pred             CeEEEEeCCCeEEEEEeecCccc
Q 016257          301 RVVLTASKEWGAMITKLTVPADW  323 (392)
Q Consensus       301 ~~l~~~~~dg~i~iw~~~~~~~~  323 (392)
                      ++|++++ ||.|++|++..++..
T Consensus       404 ~~l~~~~-dg~i~iwd~~~g~~~  425 (464)
T 3v7d_B          404 NILVSGS-ENQFNIYNLRSGKLV  425 (464)
T ss_dssp             SEEEEEE-TTEEEEEETTTCCEE
T ss_pred             CEEEEec-CCeEEEEECCCCcEE
Confidence            9999998 899999999876543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=8.7e-37  Score=280.08  Aligned_cols=287  Identities=12%  Similarity=0.114  Sum_probs=232.7

Q ss_pred             eEEEeeCCCCCe-eEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC
Q 016257           55 VTYVFDESEGDP-MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (392)
Q Consensus        55 ~~~~~~~h~~~v-~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (392)
                      ....+.+|.+.+ .++.+  ++++|++|+.||.|++||+.+++....+.       .|.+.|.+++|+|++ +|++|+.|
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~-------~h~~~V~~l~~~~~~-~l~s~s~d  182 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLS-------GHDGGVWALKYAHGG-ILVSGSTD  182 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEEC-------CCSSCEEEEEECSTT-EEEEEETT
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEe-------CCCcCEEEEEEcCCC-EEEEEeCC
Confidence            456788998885 56665  56799999999999999998887554443       378899999999988 99999999


Q ss_pred             CcEEEEeCCCCceeecccCCCCcEEEEEec--CCCCeEEEEcCCCcEEEEECCCCeee----------------------
Q 016257          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFS--LDSEFLATTSTDGSARIWKTEDGVAW----------------------  189 (392)
Q Consensus       134 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~--~~~~~l~~~~~d~~i~vwd~~~~~~~----------------------  189 (392)
                      |+|++||+++++....+..|...|.+++|+  ++++++++++.|+.|++||++++...                      
T Consensus       183 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (464)
T 3v7d_B          183 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF  262 (464)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTE
T ss_pred             CCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEE
Confidence            999999999999888888888899999998  57789999999999999999876533                      


Q ss_pred             -EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcE
Q 016257          190 -TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDI  268 (392)
Q Consensus       190 -~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  268 (392)
                       ..+.. +...+.++  ++++..     +++++.|+.|++||+++++.+..+..|...+.+++|+|+++++++|+.||.|
T Consensus       263 ~~~~~~-~~~~v~~~--~~~~~~-----l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i  334 (464)
T 3v7d_B          263 VGVLRG-HMASVRTV--SGHGNI-----VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI  334 (464)
T ss_dssp             EEEECC-CSSCEEEE--EEETTE-----EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             EEEccC-ccceEEEE--cCCCCE-----EEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcE
Confidence             22332 33355555  667776     7899999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeee--eeeeeeeeeceEEEEee
Q 016257          269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIY--SLLLALFLASAVVFYIF  346 (392)
Q Consensus       269 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  346 (392)
                      ++||+++++.+..+ .+| ...|.+++|+  +++|++++.||.|++|++............  ............++++ 
T Consensus       335 ~vwd~~~~~~~~~~-~~h-~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  409 (464)
T 3v7d_B          335 RIWDLENGELMYTL-QGH-TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-  409 (464)
T ss_dssp             EEEETTTTEEEEEE-CCC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEE-
T ss_pred             EEEECCCCcEEEEE-eCC-CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEe-
Confidence            99999999988877 578 8999999997  579999999999999999865432221111  1111222233344444 


Q ss_pred             ecceeeeecccccccccC
Q 016257          347 FENSDSFWNFPVARNQHG  364 (392)
Q Consensus       347 ~d~~i~~W~~~~~~~~~~  364 (392)
                      .|+.|++||+.+++.+..
T Consensus       410 ~dg~i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          410 SENQFNIYNLRSGKLVHA  427 (464)
T ss_dssp             ETTEEEEEETTTCCEEES
T ss_pred             cCCeEEEEECCCCcEEeh
Confidence            499999999999887653

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.8e-37  Score=275.79  Aligned_cols=296  Identities=13%  Similarity=0.097  Sum_probs=231.1

Q ss_pred             CCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe
Q 016257           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (392)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  131 (392)
                      .+.......+|...+....+++++..+++++.|+.|++|++.+++.......      .|...|.+++|+|++++|++|+
T Consensus        80 ~p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~------~~~~~v~~v~~s~~~~~l~~~~  153 (401)
T 4aez_A           80 TPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAET------DESTYVASVKWSHDGSFLSVGL  153 (401)
T ss_dssp             SCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEEC------CTTCCEEEEEECTTSSEEEEEE
T ss_pred             CcceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeec------CCCCCEEEEEECCCCCEEEEEC
Confidence            3444445557776644433333445688889999999999988775443322      2678999999999999999999


Q ss_pred             CCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCC-CeeeEEEecCCCcceEEEEecCCCC
Q 016257          132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGT  210 (392)
Q Consensus       132 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~  210 (392)
                      .||.|++||+++++.+..+..|...|.+++|+  +++|++++.|+.|++||++. ......+..+ ...|.+++|+|++.
T Consensus       154 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~  230 (401)
T 4aez_A          154 GNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGH-SSEVCGLAWRSDGL  230 (401)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECC-SSCEEEEEECTTSS
T ss_pred             CCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCC-CCCeeEEEEcCCCC
Confidence            99999999999999988888888899999995  67999999999999999984 5556666554 55899999999998


Q ss_pred             cceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCC-CEEEEEe--CCCcEEEEecCCceeeeeeecccc
Q 016257          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG-KYLAMGS--KDGDICVVDVKKMEINHWSKRLHL  287 (392)
Q Consensus       211 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~  287 (392)
                      .     +++++.|+.|++||+++++.+..+..|...|.+++|+|++ .++++++  .|+.|++||+.+++....+.  + 
T Consensus       231 ~-----l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--~-  302 (401)
T 4aez_A          231 Q-----LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD--A-  302 (401)
T ss_dssp             E-----EEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE--C-
T ss_pred             E-----EEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe--C-
Confidence            7     7999999999999999999888888899999999999976 5666654  79999999999998887763  4 


Q ss_pred             CcceEEEEEeeCCCeEEEEe--CCCeEEEEEeecCccccceeeee---eee--eeeeeceEEEEeeecceeeeecccccc
Q 016257          288 GTSIALVEFCPTQRVVLTAS--KEWGAMITKLTVPADWKEWQIYS---LLL--ALFLASAVVFYIFFENSDSFWNFPVAR  360 (392)
Q Consensus       288 ~~~i~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~d~~i~~W~~~~~~  360 (392)
                      ...|.+++|+|++++|++++  .||.|++|++.............   .+.  ........+++++.|+.|++|++..++
T Consensus       303 ~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          303 GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD  382 (401)
T ss_dssp             SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred             CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            67899999999999999954  89999999998754332221110   111  111234567888899999999999887


Q ss_pred             cccC
Q 016257          361 NQHG  364 (392)
Q Consensus       361 ~~~~  364 (392)
                      .+..
T Consensus       383 ~~~~  386 (401)
T 4aez_A          383 HVKR  386 (401)
T ss_dssp             ----
T ss_pred             cccc
Confidence            6643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3e-37  Score=277.81  Aligned_cols=292  Identities=11%  Similarity=0.101  Sum_probs=226.3

Q ss_pred             eecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC-CCCeEEEEeCCCeE
Q 016257            9 CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGC   87 (392)
Q Consensus         9 ~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~~~~~d~~i   87 (392)
                      .++++|+.  ..+++.|+.      ++.|.+|.++..+..    ......+.+|.+.|++++|+| ++++|++|+.||.|
T Consensus        39 ~~~~~~~~--~~~~~~~~~------~g~i~v~~~~~~~~~----~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v  106 (402)
T 2aq5_A           39 FCAVNPKF--MALICEASG------GGAFLVLPLGKTGRV----DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTV  106 (402)
T ss_dssp             SEEECSSE--EEEEBCCSS------SCCEEEEETTCCEEC----CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred             cEEECCCe--EEEEEEEcC------CCEEEEEECccCCCC----CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeE
Confidence            34555543  234443433      667999998643221    112234788999999999999 99999999999999


Q ss_pred             EEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCC-CEEEEEeCCCcEEEEeCCCCceeecc--cCCCCcEEEEEecC
Q 016257           88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDE--PKAHKSVLDMDFSL  164 (392)
Q Consensus        88 ~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~i~~~~  164 (392)
                      ++|++.++...............|...|.+++|+|++ ++|++++.|+.|++||+++++....+  ..|...|.+++|+|
T Consensus       107 ~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~  186 (402)
T 2aq5_A          107 MVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR  186 (402)
T ss_dssp             EEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT
T ss_pred             EEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC
Confidence            9999988743211110011112378899999999998 69999999999999999999988777  67778999999999


Q ss_pred             CCCeEEEEcCCCcEEEEECCCCeeeEEE-ecCCCcceEEEEecCCCCcceEEEEEEe---CCccEEEEEeCCCcee-eee
Q 016257          165 DSEFLATTSTDGSARIWKTEDGVAWTFL-TRNSDEKIELCRFSKDGTKPFLFCTVQR---GDKALLAVYDISTWNK-IGH  239 (392)
Q Consensus       165 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~d~~i~v~d~~~~~~-~~~  239 (392)
                      ++++|++++.|+.|++||+++++.+..+ ..+....+.+++|+|++..     ++++   +.++.|++||+++.+. +..
T Consensus       187 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~g~~~~~d~~i~iwd~~~~~~~~~~  261 (402)
T 2aq5_A          187 DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKI-----LTTGFSRMSERQVALWDTKHLEEPLSL  261 (402)
T ss_dssp             TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEE-----EEEEECTTCCEEEEEEETTBCSSCSEE
T ss_pred             CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcE-----EEEeccCCCCceEEEEcCccccCCceE
Confidence            9999999999999999999999998888 4555445899999999885     5666   7899999999998664 222


Q ss_pred             e-cccCCCcEEEEECCCCCEEEE-EeCCCcEEEEecCCcee-eeeee-ccccCcceEEEEEeeCCCeEEEEeCCCeEEEE
Q 016257          240 K-RLLRKPASVLSISLDGKYLAM-GSKDGDICVVDVKKMEI-NHWSK-RLHLGTSIALVEFCPTQRVVLTASKEWGAMIT  315 (392)
Q Consensus       240 ~-~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw  315 (392)
                      . ..+...+.+++|+|++++|++ |+.||.|++||+.+++. ...+. ..| ...|.+++|+|++.++++  .++.+++|
T Consensus       262 ~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~-~~~v~~~~~sp~~~~~~s--~~~~~~~~  338 (402)
T 2aq5_A          262 QELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSS-KESQRGMGYMPKRGLEVN--KCEIARFY  338 (402)
T ss_dssp             EECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECC-SSCCSEEEECCGGGSCGG--GTEEEEEE
T ss_pred             EeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccccc-CCcccceEEeccccccee--cceeEEEE
Confidence            2 245678999999999999875 55799999999998873 22221 224 689999999999998775  56699999


Q ss_pred             EeecC
Q 016257          316 KLTVP  320 (392)
Q Consensus       316 ~~~~~  320 (392)
                      ++...
T Consensus       339 ~l~~~  343 (402)
T 2aq5_A          339 KLHER  343 (402)
T ss_dssp             EEETT
T ss_pred             EcCCC
Confidence            99854

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.3e-37  Score=270.61  Aligned_cols=282  Identities=11%  Similarity=0.036  Sum_probs=229.2

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC-eEEEEe
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCST   82 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~~~~   82 (392)
                      .++|++++|+|++.   ++++|+.      ++.|++|.++....     ......+.+|...|.+++|+|+++ +|++++
T Consensus        11 ~~~v~~~~~s~~~~---~l~~~~~------d~~v~iw~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~   76 (342)
T 1yfq_A           11 KDYISDIKIIPSKS---LLLITSW------DGSLTVYKFDIQAK-----NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT   76 (342)
T ss_dssp             SSCEEEEEEEGGGT---EEEEEET------TSEEEEEEEETTTT-----EEEEEEEEECSSCEEEEEEEESSSEEEEEEE
T ss_pred             CCcEEEEEEcCCCC---EEEEEcC------CCeEEEEEeCCCCc-----cccceeeeecCCceEEEEECCCCCcEEEEEc
Confidence            56899999999874   4554443      67799999975431     112334558999999999999999 999999


Q ss_pred             CCCeEEEEEE-eCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC---------CceeecccC
Q 016257           83 TNGGCKLFEV-YGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS---------LRIILDEPK  152 (392)
Q Consensus        83 ~d~~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~  152 (392)
                      .||.|++||+ .+++. ..+..     ..|...|.+++|+| +++|++++.|+.|++||+++         ++.+..+. 
T Consensus        77 ~dg~i~~wd~~~~~~~-~~~~~-----~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-  148 (342)
T 1yfq_A           77 VQGEILKVDLIGSPSF-QALTN-----NEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-  148 (342)
T ss_dssp             TTSCEEEECSSSSSSE-EECBS-----CCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-
T ss_pred             CCCeEEEEEeccCCce-Eeccc-----cCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-
Confidence            9999999999 77653 11111     02778999999999 99999999999999999987         66555444 


Q ss_pred             CCCcEEEEEecCCCCeEEEEcCCCcEEEEECCC-Cee-eEEEecCCCcceEEEEecC-CCCcceEEEEEEeCCccEEEEE
Q 016257          153 AHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVA-WTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVY  229 (392)
Q Consensus       153 ~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~-~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~d~~i~v~  229 (392)
                      +...|.+++|+|++  +++++.|+.|++||+++ +.. .......+...+.+++|+| ++..     +++++.++.|++|
T Consensus       149 ~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~-----l~~~~~dg~i~i~  221 (342)
T 1yfq_A          149 VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG-----YACSSIDGRVAVE  221 (342)
T ss_dssp             SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCE-----EEEEETTSEEEEE
T ss_pred             eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCE-----EEEEecCCcEEEE
Confidence            67799999999987  99999999999999987 543 3334445566899999999 9886     7889999999999


Q ss_pred             eCCCc------eeeeeecccCC---------CcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEE
Q 016257          230 DISTW------NKIGHKRLLRK---------PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALV  294 (392)
Q Consensus       230 d~~~~------~~~~~~~~~~~---------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~  294 (392)
                      |++..      +....+..|..         .|.+++|+|++++|++++.||.|++||+.+++.+..+...| ...|.++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-~~~v~~~  300 (342)
T 1yfq_A          222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKI  300 (342)
T ss_dssp             ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-SSEEEEE
T ss_pred             EEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhccc-CCCceEe
Confidence            99876      66666666654         99999999999999999999999999999999888775444 7789999


Q ss_pred             EEeeCCCeEEEEeCCCe-EEEEEe
Q 016257          295 EFCPTQRVVLTASKEWG-AMITKL  317 (392)
Q Consensus       295 ~~s~~~~~l~~~~~dg~-i~iw~~  317 (392)
                      +  |++++|++++.||. .+.+..
T Consensus       301 ~--~~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          301 A--CSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             E--ECSSEEEEEEECTHHHHCSSS
T ss_pred             c--CCCCeEEEEecCCcccccccc
Confidence            9  99999999999998 555543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=6.3e-37  Score=300.13  Aligned_cols=286  Identities=12%  Similarity=0.104  Sum_probs=239.8

Q ss_pred             eEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC
Q 016257           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (392)
Q Consensus        55 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (392)
                      ....+.+|.+.|.+++|+|++++|++++.||.|++||+.+++....+.       .|..+|.+++|+|++++|++++.||
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~dg   77 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ-------VTETPVRAGKFIARKNWIIVGSDDF   77 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-------CCSSCEEEEEEEGGGTEEEEEETTS
T ss_pred             cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe-------cCCCcEEEEEEeCCCCEEEEEeCCC
Confidence            346788999999999999999999999999999999998876554443       2678999999999999999999999


Q ss_pred             cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCC-eeeEEEecCCCcceEEEEecC-CCCcc
Q 016257          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSK-DGTKP  212 (392)
Q Consensus       135 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~~  212 (392)
                      .|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++||++++ .....+.. +...+.+++|+| ++.. 
T Consensus        78 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~-  155 (814)
T 3mkq_A           78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-HEHFVMCVAFNPKDPST-  155 (814)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC-CSSCEEEEEEETTEEEE-
T ss_pred             eEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC-CCCcEEEEEEEcCCCCE-
Confidence            9999999999998888888889999999999999999999999999999887 45555554 455899999999 6665 


Q ss_pred             eEEEEEEeCCccEEEEEeCCCceeeeeecccC-CCcEEEEECC--CCCEEEEEeCCCcEEEEecCCceeeeeeeccccCc
Q 016257          213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-KPASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT  289 (392)
Q Consensus       213 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  289 (392)
                          +++++.|+.|++||+++++....+..+. ..+.+++|+|  ++.+|++++.||.|++||+.+++....+ ..| ..
T Consensus       156 ----l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~-~~  229 (814)
T 3mkq_A          156 ----FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGH-MS  229 (814)
T ss_dssp             ----EEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE-ECC-SS
T ss_pred             ----EEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE-cCC-CC
Confidence                7889999999999999887766665544 8899999999  9999999999999999999999887776 567 88


Q ss_pred             ceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccce--------eeeeeeeeeeeeceEEEEeeecceeeeeccccc
Q 016257          290 SIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEW--------QIYSLLLALFLASAVVFYIFFENSDSFWNFPVA  359 (392)
Q Consensus       290 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~  359 (392)
                      .|.+++|+|++++|++++.||.|++|++.........        .+.+.+.+    ....++.+.++.+.+|++..+
T Consensus       230 ~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  303 (814)
T 3mkq_A          230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG----RKNYIASGFDNGFTVLSLGND  303 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTC----GGGEEEEEETTEEEEEECSCC
T ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCC----CceEEEEEeCCCEEEEEcCCC
Confidence            9999999999999999999999999998765432221        11111111    112456667888999987654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.9e-36  Score=274.85  Aligned_cols=300  Identities=14%  Similarity=0.136  Sum_probs=234.3

Q ss_pred             CceeeeecCCCCCcc-------eeEEEeCCCCCCCCCcCceeEEEEcCC--------------CCcc----ccC-CceEE
Q 016257            4 GGTVTCGSWIKRPEN-------VNLVVLGKSSRASSSPSVLEIFSFDPK--------------TTSV----YTS-PLVTY   57 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~-------~~~~~~g~~~~~~~~~~~i~i~~~~~~--------------~~~~----~~~-~~~~~   57 (392)
                      .-|..|+.|.|+...       ...+++|...  .+..+.|.++.++..              ....    ... .....
T Consensus        45 ~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t--~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  122 (430)
T 2xyi_A           45 EWPSLTAQWLPDVTKQDGKDYSVHRLILGTHT--SDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIE  122 (430)
T ss_dssp             SSCCSCEEECSCCEECTTCSCEEEEEEEECCC--SSSCEEEEEEEEEEC--------------------------CEEEE
T ss_pred             CCCceEEEECcccccccCCCcceEEEEEEEcC--CCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEE
Confidence            568899999997631       1345666653  236788888876511              0000    111 22335


Q ss_pred             EeeCCCCCeeEEEEcCC-CCeEEEEeCCCeEEEEEEeCC----------ccceeeccccCCCCCCCCCeEEEEecCCCC-
Q 016257           58 VFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGG----------ATDINLLAKKMPPLQDAGPQKCLSFSVDGS-  125 (392)
Q Consensus        58 ~~~~h~~~v~~~~~sp~-~~~l~~~~~d~~i~iw~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-  125 (392)
                      ....|.+.|++++|+|+ +.+|++++.+|.|++|++...          .....+       ..|...+.+++|+|++. 
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~l~~~~~~~~  195 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-------RGHQKEGYGLSWNPNLNG  195 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-------ECCSSCCCCEEECTTSTT
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-------cCCCCCeEEEEeCCCCCC
Confidence            56789999999999997 679999999999999999762          211111       13778999999999988 


Q ss_pred             EEEEEeCCCcEEEEeCCCCce-------eecccCCCCcEEEEEecC-CCCeEEEEcCCCcEEEEECCCC---eeeEEEec
Q 016257          126 RFAAGGVDGHLRIMHWPSLRI-------ILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDG---VAWTFLTR  194 (392)
Q Consensus       126 ~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~  194 (392)
                      +|++|+.||.|++|++.++..       ...+..|...|.+++|+| ++.+|++++.|+.|++||++++   +....+..
T Consensus       196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  275 (430)
T 2xyi_A          196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA  275 (430)
T ss_dssp             EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred             eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence            999999999999999987432       233456777899999999 6788999999999999999987   46666654


Q ss_pred             CCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC-ceeeeeecccCCCcEEEEECCCCC-EEEEEeCCCcEEEEe
Q 016257          195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKRLLRKPASVLSISLDGK-YLAMGSKDGDICVVD  272 (392)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd  272 (392)
                      + ...|.+++|+|++..+    +++++.|+.|++||+++ ..++..+..|...|++++|+|+++ +|++++.|+.|++||
T Consensus       276 ~-~~~v~~i~~~p~~~~~----l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd  350 (430)
T 2xyi_A          276 H-TAEVNCLSFNPYSEFI----LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD  350 (430)
T ss_dssp             C-SSCEEEEEECSSCTTE----EEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEE
T ss_pred             C-CCCeEEEEeCCCCCCE----EEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEe
Confidence            4 4579999999998852    67899999999999998 456777888999999999999984 799999999999999


Q ss_pred             cCCc--------------eeeeeeeccccCcceEEEEEeeCCC-eEEEEeCCCeEEEEEeec
Q 016257          273 VKKM--------------EINHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLTV  319 (392)
Q Consensus       273 ~~~~--------------~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~  319 (392)
                      +...              +.+.. ..+| ...|++++|+|+++ +|++++.||.|++|++..
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~-~~~h-~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          351 LSKIGEEQSTEDAEDGPPELLFI-HGGH-TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             GGGTTCCCCHHHHHHCCTTEEEE-CCCC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             CCCCccccCccccccCCcceEEE-cCCC-CCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            9872              33333 2567 88999999999999 899999999999999974

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.7e-35  Score=269.94  Aligned_cols=303  Identities=16%  Similarity=0.208  Sum_probs=247.1

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCC
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~   85 (392)
                      .+.|++++  +   .++++|+.      ++.|++|+++        .......+.+|.+.|.+++|+  ++.|++|+.||
T Consensus       121 v~~~~~~~--g---~~l~sg~~------dg~i~vwd~~--------~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg  179 (445)
T 2ovr_B          121 VITCLQFC--G---NRIVSGSD------DNTLKVWSAV--------TGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDR  179 (445)
T ss_dssp             CEEEEEEE--T---TEEEEEET------TSCEEEEETT--------TCCEEEECCCCSSCEEEEEEE--TTEEEEEETTS
T ss_pred             cEEEEEEc--C---CEEEEEEC------CCcEEEEECC--------CCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCC
Confidence            35666664  3   24555544      6779999886        344566788999999999997  56999999999


Q ss_pred             eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCC
Q 016257           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD  165 (392)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~  165 (392)
                      .|++||+.+++....+.       .|...|.++.|+  ++.+++|+.||.|++||+++++....+..|...|.+++|  +
T Consensus       180 ~i~vwd~~~~~~~~~~~-------~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~  248 (445)
T 2ovr_B          180 TLKVWNAETGECIHTLY-------GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--D  248 (445)
T ss_dssp             CEEEEETTTTEEEEEEC-------CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--C
T ss_pred             eEEEEECCcCcEEEEEC-------CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--C
Confidence            99999998887554443       367899999995  568999999999999999999998888888889999999  6


Q ss_pred             CCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCC
Q 016257          166 SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK  245 (392)
Q Consensus       166 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~  245 (392)
                      ++++++++.|+.|++||+++++.+..+..+. ..+.+++|  ++..     +++++.|+.|++||+++++.+..+..|..
T Consensus       249 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~--~~~~-----l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  320 (445)
T 2ovr_B          249 GRRVVSGAYDFMVKVWDPETETCLHTLQGHT-NRVYSLQF--DGIH-----VVSGSLDTSIRVWDVETGNCIHTLTGHQS  320 (445)
T ss_dssp             SSCEEEEETTSCEEEEEGGGTEEEEEECCCS-SCEEEEEE--CSSE-----EEEEETTSCEEEEETTTCCEEEEECCCCS
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeEEecCCC-CceEEEEE--CCCE-----EEEEeCCCeEEEEECCCCCEEEEEcCCcc
Confidence            8899999999999999999999988887654 47999999  5665     78999999999999999999999999988


Q ss_pred             CcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec--cccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccc
Q 016257          246 PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR--LHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADW  323 (392)
Q Consensus       246 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  323 (392)
                      .+.++.+  +++++++|+.||.|++||+++++....+..  .| ...|++++|+  +++|++|+.||.|++|++..+...
T Consensus       321 ~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~  395 (445)
T 2ovr_B          321 LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFI  395 (445)
T ss_dssp             CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred             cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCC-CCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCcee
Confidence            9988877  467999999999999999999988776642  36 7899999995  679999999999999999866543


Q ss_pred             cce-------------eeeeeeeeeeeeceEEEEeeecce----eeeecccc
Q 016257          324 KEW-------------QIYSLLLALFLASAVVFYIFFENS----DSFWNFPV  358 (392)
Q Consensus       324 ~~~-------------~~~~~~~~~~~~~~~~~~~~~d~~----i~~W~~~~  358 (392)
                      ...             .+.+.+     ....+++++.|+.    +.+||+..
T Consensus       396 ~~~~~~~~~~~~~~v~~~~~s~-----~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          396 RNLVTLESGGSGGVVWRIRASN-----TKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEEEECTTGGGTCEEEEEEECS-----SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             eeeeccccCCCCceEEEEEecC-----CEEEEEEcccCCCCccEEEEEECCC
Confidence            222             222222     2335566777887    99999874

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.3e-36  Score=260.57  Aligned_cols=246  Identities=12%  Similarity=0.107  Sum_probs=196.0

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC--CCCeEEEE
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCS   81 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~~~~l~~~   81 (392)
                      ..+|++++|+|+++   ++++|+.      |+.|++|+++...      ......+.+|.+.|++++|+|  ++++|++|
T Consensus         9 ~~~V~~~~~s~~g~---~las~s~------D~~v~iw~~~~~~------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~   73 (297)
T 2pm7_B            9 NEMIHDAVMDYYGK---RMATCSS------DKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILASC   73 (297)
T ss_dssp             SSCEEEEEECTTSS---EEEEEET------TSCEEEEEBCSSC------BCCCEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred             cCceEEEEECCCCC---EEEEEeC------CCEEEEEecCCCC------cEEEEEEccccCCeEEEEecCCCcCCEEEEE
Confidence            46899999999984   4665554      7779999986432      223457899999999999986  38899999


Q ss_pred             eCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC--CCEEEEEeCCCcEEEEeCCCCce--eecccCCCCcE
Q 016257           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSV  157 (392)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i  157 (392)
                      +.|++|++||+.+++......     ...|...|.+++|+|+  +.+|++++.|+.|++||++++..  ...+..|...|
T Consensus        74 s~D~~v~iWd~~~~~~~~~~~-----~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v  148 (297)
T 2pm7_B           74 SYDGKVMIWKEENGRWSQIAV-----HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV  148 (297)
T ss_dssp             ETTTEEEEEEBSSSCBCCCEE-----ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCE
T ss_pred             cCCCEEEEEEcCCCceEEEEE-----eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCcc
Confidence            999999999998764211111     1136789999999997  88999999999999999987632  23455677799


Q ss_pred             EEEEecCC-------------CCeEEEEcCCCcEEEEECCCCe----eeEEEecCCCcceEEEEecCCC---CcceEEEE
Q 016257          158 LDMDFSLD-------------SEFLATTSTDGSARIWKTEDGV----AWTFLTRNSDEKIELCRFSKDG---TKPFLFCT  217 (392)
Q Consensus       158 ~~i~~~~~-------------~~~l~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~  217 (392)
                      .+++|+|+             +++|++++.|++|++||+++++    ....+..| ...|.+++|+|++   ..     +
T Consensus       149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H-~~~V~~v~~sp~~~~~~~-----l  222 (297)
T 2pm7_B          149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSY-----M  222 (297)
T ss_dssp             EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEE-----E
T ss_pred             ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC-CCceEEEEECCCCCCceE-----E
Confidence            99999997             5789999999999999998765    44555544 5589999999996   33     7


Q ss_pred             EEeCCccEEEEEeCCCce---eeeee--cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 016257          218 VQRGDKALLAVYDISTWN---KIGHK--RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (392)
Q Consensus       218 ~~~~~d~~i~v~d~~~~~---~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  275 (392)
                      ++++.|+.|++||++...   ....+  ..+...+.+++|+|+|++|++++.|+.|++|+...
T Consensus       223 as~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          223 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             EEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            899999999999998642   11122  45678899999999999999999999999999763

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1e-35  Score=270.61  Aligned_cols=282  Identities=14%  Similarity=0.204  Sum_probs=223.0

Q ss_pred             eCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 016257           60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (392)
Q Consensus        60 ~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~  139 (392)
                      .+|...|.++.+  ++++|++|+.||.|++||+.+++....+.       .|...|.+++|  ++++|++|+.||.|++|
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~l~~--~~~~l~sg~~dg~i~vw  198 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT-------GHTGSVLCLQY--DERVIITGSSDSTVRVW  198 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEEC-------CCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEc-------CCCCcEEEEEE--CCCEEEEEcCCCeEEEE
Confidence            456678998887  78899999999999999998877554443       37789999999  78899999999999999


Q ss_pred             eCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeE--EEecCCCcceEEEEecCCCCcceEEEE
Q 016257          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT--FLTRNSDEKIELCRFSKDGTKPFLFCT  217 (392)
Q Consensus       140 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (392)
                      |+++++....+..|...|.+++|++  ..+++++.||.|++||+++++...  .....+...|.+++|  ++..     +
T Consensus       199 d~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~-----l  269 (435)
T 1p22_A          199 DVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKY-----I  269 (435)
T ss_dssp             ESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTE-----E
T ss_pred             ECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCE-----E
Confidence            9999999888888888999999974  599999999999999999876552  223344568999999  5555     7


Q ss_pred             EEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEe
Q 016257          218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (392)
Q Consensus       218 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  297 (392)
                      ++++.|+.|++||+++++.+..+..|...+.++++  +++++++|+.||.|++||+++++....+ .+| ...|.+++| 
T Consensus       270 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h-~~~v~~~~~-  344 (435)
T 1p22_A          270 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL-EGH-EELVRCIRF-  344 (435)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE-CCC-SSCEEEEEC-
T ss_pred             EEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEE-eCC-cCcEEEEEe-
Confidence            89999999999999999999999999999999998  4789999999999999999999888776 578 889999999 


Q ss_pred             eCCCeEEEEeCCCeEEEEEeecCcccc-------ceee---eeeeeeeeeeceEEEEeeecceeeeecccccccccCCCC
Q 016257          298 PTQRVVLTASKEWGAMITKLTVPADWK-------EWQI---YSLLLALFLASAVVFYIFFENSDSFWNFPVARNQHGGPK  367 (392)
Q Consensus       298 ~~~~~l~~~~~dg~i~iw~~~~~~~~~-------~~~~---~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~p~  367 (392)
                       ++.+|++|+.||.|++|++.......       ....   ...+.........+++++.|+.|++||+..+...+..+.
T Consensus       345 -~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  423 (435)
T 1p22_A          345 -DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAQAEPP  423 (435)
T ss_dssp             -CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC------------
T ss_pred             -cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCCCcccCCC
Confidence             78899999999999999997544211       0000   011122223556788888999999999988765544443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-35  Score=269.99  Aligned_cols=247  Identities=10%  Similarity=0.029  Sum_probs=202.0

Q ss_pred             CCCCCeeEEEEcCCCCeE-EEEeCCCeEEEEEEe--CCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEE
Q 016257           61 ESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVY--GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (392)
Q Consensus        61 ~h~~~v~~~~~sp~~~~l-~~~~~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  137 (392)
                      +|.+.|.+++|+|++++| ++++.|+.|++||+.  +++....+...     .+...|.+++|+|++++|++++.+|.++
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~~~~~~g~v~  174 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF-----CFSKRPNAISIAEDDTTVIIADKFGDVY  174 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE-----ECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc-----cCCCCceEEEEcCCCCEEEEEeCCCcEE
Confidence            566789999999999996 889999999999998  66554443321     2567899999999999999999999999


Q ss_pred             EEeCCCCceee----cccCCCCcEEEEEecCC---CCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCC
Q 016257          138 IMHWPSLRIIL----DEPKAHKSVLDMDFSLD---SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (392)
Q Consensus       138 i~d~~~~~~~~----~~~~~~~~i~~i~~~~~---~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (392)
                      +|++.+++...    .+..|...|.+++|+|+   +++|++++.|+.|++||+++++.+..+...+...|.+++|+ ++.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~  253 (450)
T 2vdu_B          175 SIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDY  253 (450)
T ss_dssp             EEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STT
T ss_pred             EEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCC
Confidence            99998776543    55667789999999999   99999999999999999999988887665566689999999 888


Q ss_pred             cceEEEEEEeCCccEEEEEeCCCceeeeeecc-------------------------cCCCcEEEEECCCCCEEEEEe-C
Q 016257          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-------------------------LRKPASVLSISLDGKYLAMGS-K  264 (392)
Q Consensus       211 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-------------------------~~~~v~~~~~s~~~~~l~~~~-~  264 (392)
                      .     +++++.|+.|++||+++++.+..+..                         ....+.+++|+|++++|++++ .
T Consensus       254 ~-----l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~  328 (450)
T 2vdu_B          254 L-----LLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA  328 (450)
T ss_dssp             E-----EEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT
T ss_pred             E-----EEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC
Confidence            7     78999999999999999887766642                         235789999999999999999 8


Q ss_pred             CCcEEEEec--CCc---eeeeeeeccccCcceEEEEEeeCCCeEEEEeC------CCeEEEEEeecCc
Q 016257          265 DGDICVVDV--KKM---EINHWSKRLHLGTSIALVEFCPTQRVVLTASK------EWGAMITKLTVPA  321 (392)
Q Consensus       265 dg~i~iwd~--~~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~iw~~~~~~  321 (392)
                      |+.|++|++  .++   +....+ ..|  ..|.+++|+|++.++++++.      +..|.+|.+....
T Consensus       329 d~~i~iw~~~~~~~~~l~~~~~~-~~~--~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~  393 (450)
T 2vdu_B          329 TKCIIILEMSEKQKGDLALKQII-TFP--YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNE  393 (450)
T ss_dssp             CSEEEEEEECSSSTTCEEEEEEE-ECS--SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTT
T ss_pred             CCeEEEEEeccCCCCceeeccEe-ccC--CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCC
Confidence            999999999  554   444444 233  78999999996444444343      5568999987543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.3e-36  Score=271.28  Aligned_cols=319  Identities=10%  Similarity=0.030  Sum_probs=233.4

Q ss_pred             cCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC-CCCeEEEEeCCCeEEEEEEeCCccceeecccc------C
Q 016257           34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKK------M  106 (392)
Q Consensus        34 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~------~  106 (392)
                      +..+++|.++        .......+.+|.+.|++++|+| ++++|++|+.||.|++||+.+.+.........      .
T Consensus        22 ~~~~~v~~~~--------~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~   93 (408)
T 4a11_B           22 ESTRRVLGLE--------LNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRD   93 (408)
T ss_dssp             HHHHHHHTEE--------ECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTT
T ss_pred             cCcceeeccc--------cCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccccccc
Confidence            3445667665        2233456788999999999999 99999999999999999998876544332111      1


Q ss_pred             CCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCC---CCeEEEEcCCCcEEEEE
Q 016257          107 PPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD---SEFLATTSTDGSARIWK  182 (392)
Q Consensus       107 ~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~---~~~l~~~~~d~~i~vwd  182 (392)
                      ....|...|.+++|+| ++.+|++++.||.|++||+++++....+. +...+.++.|+|.   +.++++++.|+.|++||
T Consensus        94 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  172 (408)
T 4a11_B           94 HPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD  172 (408)
T ss_dssp             CTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred             ccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence            1123788999999999 78899999999999999999988765544 5678999999884   45899999999999999


Q ss_pred             CCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce-eeeee---------------cccCCC
Q 016257          183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHK---------------RLLRKP  246 (392)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~---------------~~~~~~  246 (392)
                      +++++.+..+..+. ..|.+++|+|++..+    +++++.|+.|++||+++.. .+..+               ..|...
T Consensus       173 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (408)
T 4a11_B          173 LKSGSCSHILQGHR-QEILAVSWSPRYDYI----LATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGK  247 (408)
T ss_dssp             SSSSCCCEEECCCC-SCEEEEEECSSCTTE----EEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSC
T ss_pred             CCCcceeeeecCCC-CcEEEEEECCCCCcE----EEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCc
Confidence            99998888887654 479999999999852    5789999999999998765 22222               467789


Q ss_pred             cEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecc---ccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccc
Q 016257          247 ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL---HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADW  323 (392)
Q Consensus       247 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  323 (392)
                      |.+++|+|++++|++++.||.|++||+.+++........   .....+........+..+++++.|+.|++|++......
T Consensus       248 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~  327 (408)
T 4a11_B          248 VNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI  327 (408)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE
T ss_pred             eeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce
Confidence            999999999999999999999999999988765433211   00122222222334557778888999999999765443


Q ss_pred             cceee---eeeeeeeeeeceEEEEeeecceeeeecccccccccCCC
Q 016257          324 KEWQI---YSLLLALFLASAVVFYIFFENSDSFWNFPVARNQHGGP  366 (392)
Q Consensus       324 ~~~~~---~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~p  366 (392)
                      .....   .............+++++.|+.|++|++.+++.++..+
T Consensus       328 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~  373 (408)
T 4a11_B          328 TMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD  373 (408)
T ss_dssp             EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--------
T ss_pred             eeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC
Confidence            32210   01111112234567888899999999999988765443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.1e-35  Score=270.45  Aligned_cols=273  Identities=14%  Similarity=0.186  Sum_probs=226.1

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ..+|+|++|.  +   ..+++|+.      ++.|++|+..        .......+.+|.+.|.+++|  ++++|++|+.
T Consensus       133 ~~~v~~~~~d--~---~~l~~g~~------dg~i~iwd~~--------~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~  191 (435)
T 1p22_A          133 SKGVYCLQYD--D---QKIVSGLR------DNTIKIWDKN--------TLECKRILTGHTGSVLCLQY--DERVIITGSS  191 (435)
T ss_dssp             CCCEEEEECC--S---SEEEEEES------SSCEEEEESS--------SCCEEEEECCCSSCEEEEEC--CSSEEEEEET
T ss_pred             CCcEEEEEEC--C---CEEEEEeC------CCeEEEEeCC--------CCeEEEEEcCCCCcEEEEEE--CCCEEEEEcC
Confidence            3568999883  3   24555544      6779999876        44556678899999999999  7889999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee---ecccCCCCcEEEE
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII---LDEPKAHKSVLDM  160 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~i~~i  160 (392)
                      ||.|++||+.+++....+.       .|...|.+++|++  .++++|+.||.|++||+++++..   .....|...|.++
T Consensus       192 dg~i~vwd~~~~~~~~~~~-------~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~  262 (435)
T 1p22_A          192 DSTVRVWDVNTGEMLNTLI-------HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV  262 (435)
T ss_dssp             TSCEEEEESSSCCEEEEEC-------CCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEE
T ss_pred             CCeEEEEECCCCcEEEEEc-------CCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEE
Confidence            9999999999887654443       3678999999974  59999999999999999887654   4556777899999


Q ss_pred             EecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeee
Q 016257          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (392)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~  240 (392)
                      +|  +++++++++.||.|++||+++++.+..+..+. ..+.++.++  +..     +++++.|+.|++||+++++.+..+
T Consensus       263 ~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~--~~~-----l~~g~~dg~i~iwd~~~~~~~~~~  332 (435)
T 1p22_A          263 DF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK-RGIACLQYR--DRL-----VVSGSSDNTIRLWDIECGACLRVL  332 (435)
T ss_dssp             EE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEEE--TTE-----EEEEETTSCEEEEETTTCCEEEEE
T ss_pred             Ee--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCC-CcEEEEEeC--CCE-----EEEEeCCCeEEEEECCCCCEEEEE
Confidence            99  68899999999999999999999999888664 479999985  444     789999999999999999999999


Q ss_pred             cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce---------eeeeeeccccCcceEEEEEeeCCCeEEEEeCCCe
Q 016257          241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME---------INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWG  311 (392)
Q Consensus       241 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  311 (392)
                      ..|...|.+++|  ++++|++|+.||.|++||+.+++         ....+ ..| ...|.+++|  ++.+|++++.||.
T Consensus       333 ~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~h-~~~v~~l~~--~~~~l~s~s~Dg~  406 (435)
T 1p22_A          333 EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-VEH-SGRVFRLQF--DEFQIVSSSHDDT  406 (435)
T ss_dssp             CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-CCC-SSCCCCEEE--CSSCEEECCSSSE
T ss_pred             eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec-cCC-CCCeEEEEe--CCCEEEEEeCCCE
Confidence            999999999998  78899999999999999998765         44444 578 889999999  7889999999999


Q ss_pred             EEEEEeecCcc
Q 016257          312 AMITKLTVPAD  322 (392)
Q Consensus       312 i~iw~~~~~~~  322 (392)
                      |++|++.....
T Consensus       407 i~iwd~~~~~~  417 (435)
T 1p22_A          407 ILIWDFLNDPA  417 (435)
T ss_dssp             EEEEC------
T ss_pred             EEEEECCCCCC
Confidence            99999986543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-37  Score=278.18  Aligned_cols=289  Identities=9%  Similarity=0.042  Sum_probs=220.8

Q ss_pred             CCCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEE
Q 016257            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (392)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~   81 (392)
                      |....|.+++|+||+   .++|+++.      |.+|+  +  +..      +   ..+++|...|.+++|+|+|      
T Consensus        13 ~~~~~v~sv~~SpDG---~~iASas~------D~TV~--d--~~~------~---~~l~gh~~~v~~V~FsPdg------   64 (588)
T 2j04_A           13 EFEDWKNNLTWARDG---TLYLTTFP------DISIG--Q--PKY------A---KDINCNSKNLFHVKEFPLE------   64 (588)
T ss_dssp             CCSSSSCCEEECTTS---CEEEECSS------SEEEE--E--ECC------C---SCCSSBGGGTEEEEEECCC------
T ss_pred             HhhccEEEEEECCCC---CEEEEEcC------Cceee--c--ccc------c---ceecCCCccEEEEEECCCC------
Confidence            446779999999999   56777665      55566  2  221      1   1247899999999999998      


Q ss_pred             eCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCC-----c
Q 016257           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-----S  156 (392)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~  156 (392)
                       .++.+.+|+.+...         .....|...|.+++|||+|++||+++.||.|++||.+.  .+..+. |+.     .
T Consensus        65 -~~~~~~~~~~~~~~---------~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~s  131 (588)
T 2j04_A           65 -FENKLDFELAQQNG---------LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRT  131 (588)
T ss_dssp             -CCCTTTTSCCCSSC---------SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTC
T ss_pred             -CcceEEEEeCCCce---------EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcccccc
Confidence             45555555533221         11223567899999999999999999999999999544  444444 443     4


Q ss_pred             EEEEEecCCCCeEEEEcCCCcEEEEECCCCee-------eEEEe---cCCCcceEEEEecCCCCcceEEEEEEeCCccEE
Q 016257          157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-------WTFLT---RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALL  226 (392)
Q Consensus       157 i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~-------~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i  226 (392)
                      +.+++|||||++|++|+.||+|++||+++++.       +.++.   ..|...|.+++|+|++ .      ++++.|+.+
T Consensus       132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-L------aass~D~tV  204 (588)
T 2j04_A          132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-L------VAALSNNSV  204 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-E------EEEETTCCE
T ss_pred             EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-E------EEEeCCCeE
Confidence            99999999999999999999999999988752       56663   3345689999999998 3      667779999


Q ss_pred             EEEeCCCceee---eee-cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEE--eeCC
Q 016257          227 AVYDISTWNKI---GHK-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF--CPTQ  300 (392)
Q Consensus       227 ~v~d~~~~~~~---~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~--s~~~  300 (392)
                      ++||+..++..   ..+ ..|...|.+++|+  |+.||+++ ++.|++||+.+++..... .+| ...|..++|  +|++
T Consensus       205 rlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~-~gh-~~~V~~va~~~s~d~  279 (588)
T 2j04_A          205 FSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK-TGS-LENFHIIPLNHEKES  279 (588)
T ss_dssp             EEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE-CSC-CSCCCEEEETTCSSC
T ss_pred             EEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE-cCC-CceEEEEEeeeCCCC
Confidence            99999887632   345 3677899999999  68999987 699999999998875443 368 899999999  9999


Q ss_pred             CeEEEEeCCCeEEEEEeecCccccceeeeeeeeeeeeeceEEEEeeecceeeeeccccc
Q 016257          301 RVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVA  359 (392)
Q Consensus       301 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~  359 (392)
                      ..|++++.||. ++|..+.        ..+.+++...       ++.|+++++|+...+
T Consensus       280 ~~La~a~edG~-klw~~d~--------~~~spd~~l~-------a~~d~~v~lW~~~g~  322 (588)
T 2j04_A          280 TILLMSNKTSY-KVLLEDE--------LHVTADNIIA-------PYLEKKFKKWSTIWN  322 (588)
T ss_dssp             EEEEECSSCEE-EEEESSS--------EEEECCCSSH-------HHHHHHHHHTTTTTT
T ss_pred             CEEEEEcCCCC-EEEeecc--------EEECCCceEE-------EEcCCEEEEEECCCC
Confidence            99999999999 9999871        2233333322       223999999997543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.4e-35  Score=268.96  Aligned_cols=283  Identities=16%  Similarity=0.195  Sum_probs=235.2

Q ss_pred             eEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC
Q 016257           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (392)
Q Consensus        55 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (392)
                      ....+.+|.+.+.. ++++++++|++|+.||.|++||+.+++....+.       .|...|.+++|+  ++++++|+.||
T Consensus       110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~-------~h~~~v~~~~~~--~~~l~s~~~dg  179 (445)
T 2ovr_B          110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-------GHTGGVWSSQMR--DNIIISGSTDR  179 (445)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECC-------CCSSCEEEEEEE--TTEEEEEETTS
T ss_pred             eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEc-------CCCCCEEEEEec--CCEEEEEeCCC
Confidence            34568899987643 355578999999999999999998877544432       377899999997  56999999999


Q ss_pred             cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE
Q 016257          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (392)
Q Consensus       135 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (392)
                      .|++||+++++....+..|...|.++.|+  ++.+++++.|+.|++||+++++.+..+..+. ..+.+++|  ++..   
T Consensus       180 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~--~~~~---  251 (445)
T 2ovr_B          180 TLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHV-AAVRCVQY--DGRR---  251 (445)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCS-SCEEEEEE--CSSC---
T ss_pred             eEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCc-ccEEEEEE--CCCE---
Confidence            99999999999988888888899999996  5689999999999999999999988887654 47999999  5565   


Q ss_pred             EEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEE
Q 016257          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALV  294 (392)
Q Consensus       215 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~  294 (392)
                        +++++.|+.|++||+++++.+..+..|...+.+++|  ++.++++++.||.|++||+++++....+ ..| ...+.++
T Consensus       252 --l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~-~~~v~~~  325 (445)
T 2ovr_B          252 --VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL-TGH-QSLTSGM  325 (445)
T ss_dssp             --EEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE-CCC-CSCEEEE
T ss_pred             --EEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE-cCC-cccEEEE
Confidence              789999999999999999999999999999999999  7899999999999999999999988776 567 7888888


Q ss_pred             EEeeCCCeEEEEeCCCeEEEEEeecCcccccee----eeeeeeeeeeeceEEEEeeecceeeeeccccccccc
Q 016257          295 EFCPTQRVVLTASKEWGAMITKLTVPADWKEWQ----IYSLLLALFLASAVVFYIFFENSDSFWNFPVARNQH  363 (392)
Q Consensus       295 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~  363 (392)
                      .+  ++++|++++.||.|++|++..........    ....+.........+++++.|+.|++||+.+++.+.
T Consensus       326 ~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  396 (445)
T 2ovr_B          326 EL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR  396 (445)
T ss_dssp             EE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceee
Confidence            77  56799999999999999997654433221    111222333356788888999999999999887654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=8.3e-36  Score=262.39  Aligned_cols=282  Identities=13%  Similarity=0.119  Sum_probs=223.9

Q ss_pred             eeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCC-EEEEEeCCCcEE
Q 016257           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLR  137 (392)
Q Consensus        59 ~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~  137 (392)
                      ..+|.+.|++++|+|++++|++++.|+.|++|++.+.+........    ..|...|.+++|+|+++ +|++++.||.|+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   82 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS----LRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE----EECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee----eecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence            4579999999999999999999999999999999987621111111    13778999999999999 999999999999


Q ss_pred             EEeC-CCCceeecccC--CCCcEEEEEecCCCCeEEEEcCCCcEEEEECCC---------CeeeEEEecCCCcceEEEEe
Q 016257          138 IMHW-PSLRIILDEPK--AHKSVLDMDFSLDSEFLATTSTDGSARIWKTED---------GVAWTFLTRNSDEKIELCRF  205 (392)
Q Consensus       138 i~d~-~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~---------~~~~~~~~~~~~~~v~~~~~  205 (392)
                      +||+ ++++. ..+..  |...|.+++|+| +++|++++.|+.|++||+++         ++++..+.  +...+.+++|
T Consensus        83 ~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~  158 (342)
T 1yfq_A           83 KVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMDT  158 (342)
T ss_dssp             EECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEEE
T ss_pred             EEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEEEEe
Confidence            9999 87765 45666  778999999999 99999999999999999987         66665555  4557999999


Q ss_pred             cCCCCcceEEEEEEeCCccEEEEEeCCC-cee--eeeecccCCCcEEEEECC-CCCEEEEEeCCCcEEEEecCCc-----
Q 016257          206 SKDGTKPFLFCTVQRGDKALLAVYDIST-WNK--IGHKRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKM-----  276 (392)
Q Consensus       206 ~~~~~~~~~~~~~~~~~d~~i~v~d~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~-----  276 (392)
                      +|++       +++++.++.|++||+++ +..  ......+...+.+++|+| +++++++++.||.|++|+++..     
T Consensus       159 ~~~~-------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  231 (342)
T 1yfq_A          159 NSSR-------LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN  231 (342)
T ss_dssp             CSSE-------EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred             cCCc-------EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence            9886       47788899999999998 443  334456778999999999 9999999999999999999876     


Q ss_pred             -eeeeeeecccc--------CcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceee--eeeeeeeeeeceEEEEe
Q 016257          277 -EINHWSKRLHL--------GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI--YSLLLALFLASAVVFYI  345 (392)
Q Consensus       277 -~~~~~~~~~~~--------~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  345 (392)
                       +....+ ..|.        ...|.+++|+|++++|++++.||.|++|++...........  ...+.........++++
T Consensus       232 ~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~  310 (342)
T 1yfq_A          232 SSKRFAF-RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLA  310 (342)
T ss_dssp             CTTCEEE-ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEE
T ss_pred             cccceee-ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEE
Confidence             444444 3441        23999999999999999999999999999986654332211  11111112455678888


Q ss_pred             eecce-eeeecc
Q 016257          346 FFENS-DSFWNF  356 (392)
Q Consensus       346 ~~d~~-i~~W~~  356 (392)
                      +.|+. .+.+..
T Consensus       311 s~Dg~~~~~~~~  322 (342)
T 1yfq_A          311 TSDDTFKTNAAI  322 (342)
T ss_dssp             EECTHHHHCSSS
T ss_pred             ecCCcccccccc
Confidence            89998 666654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-36  Score=279.53  Aligned_cols=246  Identities=11%  Similarity=0.010  Sum_probs=194.6

Q ss_pred             CCCCeeEEEEcCCC---------CeEEE-------------------EeCCCeEEEEEEeCCccceeeccccCCCCCCCC
Q 016257           62 SEGDPMTIAVNPSG---------DDFVC-------------------STTNGGCKLFEVYGGATDINLLAKKMPPLQDAG  113 (392)
Q Consensus        62 h~~~v~~~~~sp~~---------~~l~~-------------------~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  113 (392)
                      +.+.|.+++|+|++         ++||+                   ++.|++|+||++.+++.......   ....|.+
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~---~l~~~~~  208 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQ---TIVHSFG  208 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEE---EEEECCC
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEE---EEEecCC
Confidence            57889999999876         56666                   44678999999988764221100   0012567


Q ss_pred             CeEEEEecCC------CCEEEEEeCCCcEEEEeCCCCcee-----------ecccCCCCcEEEEEecCCCCeEEEEcCCC
Q 016257          114 PQKCLSFSVD------GSRFAAGGVDGHLRIMHWPSLRII-----------LDEPKAHKSVLDMDFSLDSEFLATTSTDG  176 (392)
Q Consensus       114 ~v~~~~~s~~------~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~i~~i~~~~~~~~l~~~~~d~  176 (392)
                      .|.+++|+|+      +.+|++++.||+|++||+.+++..           ..+..|...|++++|++++ .|++|+.||
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~Dg  287 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNG  287 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTS
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCC
Confidence            8999999996      579999999999999999866421           2345666799999999864 899999999


Q ss_pred             cEEEEECCCCe-eeEEEecCCCcceEEE--EecCCC-CcceEEEEEEeCCccEEEEEeCCCceeeeeecccC--CCcEEE
Q 016257          177 SARIWKTEDGV-AWTFLTRNSDEKIELC--RFSKDG-TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR--KPASVL  250 (392)
Q Consensus       177 ~i~vwd~~~~~-~~~~~~~~~~~~v~~~--~~~~~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~v~~~  250 (392)
                      +|++||++++. +...+..| ...|.++  +|+|++ ..     +++++.|++|++||+++++....+..|.  ..+.++
T Consensus       288 tV~lWD~~~~~~~~~~~~~H-~~~V~sv~~~~s~~g~~~-----laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v  361 (524)
T 2j04_B          288 FVAEFDLTDPEVPSFYDQVH-DSYILSVSTAYSDFEDTV-----VSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPV  361 (524)
T ss_dssp             EEEEEETTBCSSCSEEEECS-SSCEEEEEEECCTTSCCE-----EEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCE
T ss_pred             EEEEEECCCCCCceEEeecc-cccEEEEEEEcCCCCCeE-----EEEeccCCeEEEEECCCCCcccccccccccCcccce
Confidence            99999998764 34445554 4589999  578887 54     7999999999999999887766665554  357899


Q ss_pred             EECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          251 SISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       251 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      +|+|+++.+++++.|++|++||++++.....+ .+| ...|++++|+|+|++|++|+.||+|++|++..
T Consensus       362 ~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l-~gH-~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          362 VYCPQIYSYIYSDGASSLRAVPSRAAFAVHPL-VSR-ETTITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             EEETTTTEEEEECSSSEEEEEETTCTTCCEEE-EEC-SSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             EeCCCcCeEEEeCCCCcEEEEECcccccceee-ecC-CCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            99999999999999999999999998876655 468 89999999999999999999999999999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=8.4e-36  Score=272.12  Aligned_cols=244  Identities=12%  Similarity=0.082  Sum_probs=196.6

Q ss_pred             CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCcc-----------ceeeccccCCCCCCC------------CCeEEE
Q 016257           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT-----------DINLLAKKMPPLQDA------------GPQKCL  118 (392)
Q Consensus        62 h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~-----------~~~~~~~~~~~~~~~------------~~v~~~  118 (392)
                      |.+.|++++|+|+|++||+|+.||.|+||++.+.+.           ...+.       .|.            ..|.++
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~~~~~~~~~~~~~V~~l   99 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-------SHEPEFDYLKSLEIEEKINKI   99 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-------CCCCEEEGGGTEEECCCCCEE
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-------cccccccccccccccCceEEE
Confidence            578999999999999999999999999999987652           11111       254            789999


Q ss_pred             EecCCC--CEEEEEeCCCcEEEEeCCCCcee---------------------------------------ec-ccCCCCc
Q 016257          119 SFSVDG--SRFAAGGVDGHLRIMHWPSLRII---------------------------------------LD-EPKAHKS  156 (392)
Q Consensus       119 ~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~---------------------------------------~~-~~~~~~~  156 (392)
                      +|+|++  .+|++++.|+.|++||+.+++..                                       .. ...|...
T Consensus       100 ~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  179 (447)
T 3dw8_B          100 RWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH  179 (447)
T ss_dssp             EECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred             EEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence            999998  79999999999999998764331                                       01 2456778


Q ss_pred             EEEEEecCCCCeEEEEcCCCcEEEEECCC-CeeeEEE------ecCCCcceEEEEecCCC-CcceEEEEEEeCCccEEEE
Q 016257          157 VLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTFL------TRNSDEKIELCRFSKDG-TKPFLFCTVQRGDKALLAV  228 (392)
Q Consensus       157 i~~i~~~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~------~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~d~~i~v  228 (392)
                      |.+++|+|++++|+++ .|+.|++||++. ++....+      ...+...|.+++|+|++ ..     +++++.|+.|++
T Consensus       180 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-----l~s~~~dg~i~i  253 (447)
T 3dw8_B          180 INSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNT-----FVYSSSKGTIRL  253 (447)
T ss_dssp             CCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTE-----EEEEETTSCEEE
T ss_pred             eEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcE-----EEEEeCCCeEEE
Confidence            9999999999999998 799999999984 4444432      22345579999999998 65     799999999999


Q ss_pred             EeCCCcee----eeeecccCC------------CcEEEEECCCCCEEEEEeCCCcEEEEecCC-ceeeeeeeccccCc--
Q 016257          229 YDISTWNK----IGHKRLLRK------------PASVLSISLDGKYLAMGSKDGDICVVDVKK-MEINHWSKRLHLGT--  289 (392)
Q Consensus       229 ~d~~~~~~----~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~--  289 (392)
                      ||+++++.    ...+..+..            .|.+++|+|++++|++++. +.|++||+++ ++.+..+ ..| ..  
T Consensus       254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~-~~~-~~~~  330 (447)
T 3dw8_B          254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETY-QVH-EYLR  330 (447)
T ss_dssp             EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCE-ESC-GGGT
T ss_pred             EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccccee-ecc-cccc
Confidence            99998876    566666665            8999999999999999998 9999999997 6666555 345 32  


Q ss_pred             -------------ceEEEEEeeCCCeEEEEeCCCeEEEEEeecCc
Q 016257          290 -------------SIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (392)
Q Consensus       290 -------------~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  321 (392)
                                   .+..++|+|++++|++|+.||.|++|++....
T Consensus       331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~  375 (447)
T 3dw8_B          331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR  375 (447)
T ss_dssp             TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred             ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence                         13459999999999999999999999997654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=9.6e-36  Score=268.01  Aligned_cols=289  Identities=14%  Similarity=0.117  Sum_probs=221.6

Q ss_pred             CCeeEEEEcCCCCeEE-EEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeC
Q 016257           64 GDPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHW  141 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~  141 (392)
                      .....++++|+...++ +++.+|.|+||++.........   ......|.+.|.+++|+| ++++|++|+.||.|++||+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~---~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~  111 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKN---VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI  111 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTT---CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEEC
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCC---CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEc
Confidence            3455688888775444 5788999999998654321111   111224889999999999 9999999999999999999


Q ss_pred             CCC-------ceeecccCCCCcEEEEEecCCC-CeEEEEcCCCcEEEEECCCCeeeEEEe-cCCCcceEEEEecCCCCcc
Q 016257          142 PSL-------RIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKP  212 (392)
Q Consensus       142 ~~~-------~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~  212 (392)
                      .++       +.+..+..|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+. ..+...|.+++|+|++.. 
T Consensus       112 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-  190 (402)
T 2aq5_A          112 PDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL-  190 (402)
T ss_dssp             CTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC-
T ss_pred             cCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE-
Confidence            887       4556677788899999999998 699999999999999999999988883 344568999999999987 


Q ss_pred             eEEEEEEeCCccEEEEEeCCCceeeeee-cccCCC-cEEEEECCCCCEEEEE---eCCCcEEEEecCCcee-eeeeeccc
Q 016257          213 FLFCTVQRGDKALLAVYDISTWNKIGHK-RLLRKP-ASVLSISLDGKYLAMG---SKDGDICVVDVKKMEI-NHWSKRLH  286 (392)
Q Consensus       213 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~  286 (392)
                          +++++.|+.|++||+++++.+..+ ..|... +.++.|+|++++|++|   +.|+.|++||+++++. .......|
T Consensus       191 ----l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~  266 (402)
T 2aq5_A          191 ----ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT  266 (402)
T ss_dssp             ----EEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC
T ss_pred             ----EEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccC
Confidence                789999999999999999988877 667655 8999999999999999   7899999999998764 33332345


Q ss_pred             cCcceEEEEEeeCCCeEEE-EeCCCeEEEEEeecCcc-ccceeee---eeeeeeeeeceEEEEeeecceeeeeccccccc
Q 016257          287 LGTSIALVEFCPTQRVVLT-ASKEWGAMITKLTVPAD-WKEWQIY---SLLLALFLASAVVFYIFFENSDSFWNFPVARN  361 (392)
Q Consensus       287 ~~~~i~~~~~s~~~~~l~~-~~~dg~i~iw~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~  361 (392)
                       ...+.+++|+|++++|++ ++.||.|++|++..... .......   ..+.+........+.++.++.+++|++..++.
T Consensus       267 -~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          267 -SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHERKC  345 (402)
T ss_dssp             -CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGTEEEEEEEEETTEE
T ss_pred             -CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceecceeEEEEEcCCCcE
Confidence             778999999999998865 55799999999987653 1111110   11111111111122234577999999987653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.4e-36  Score=260.51  Aligned_cols=245  Identities=10%  Similarity=0.099  Sum_probs=195.0

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC--CCCeEEEE
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCS   81 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~~~~l~~~   81 (392)
                      .++|++++|+|++.   ++++|+.      |+.|++|++...      .......+.+|.+.|.+++|+|  ++++|++|
T Consensus        13 ~~~V~~v~~s~~g~---~lasgs~------D~~v~lwd~~~~------~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~   77 (316)
T 3bg1_A           13 EDMIHDAQMDYYGT---RLATCSS------DRSVKIFDVRNG------GQILIADLRGHEGPVWQVAWAHPMYGNILASC   77 (316)
T ss_dssp             -CCEEEEEECGGGC---EEEEEET------TTEEEEEEEETT------EEEEEEEEECCSSCEEEEEECCGGGSSCEEEE
T ss_pred             cCeEEEeeEcCCCC---EEEEEeC------CCeEEEEEecCC------CcEEEEEEcCCCccEEEEEeCCCCCCCEEEEE
Confidence            46899999999884   4665554      778999998632      1224567899999999999986  48899999


Q ss_pred             eCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC--CCEEEEEeCCCcEEEEeCCCCce---eecccCCCCc
Q 016257           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAHKS  156 (392)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~  156 (392)
                      +.|++|++||+.+++......     ...|...|.+++|+|+  +.+|++|+.|+.|++||++++..   ......|...
T Consensus        78 s~D~~v~iWd~~~~~~~~~~~-----~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~  152 (316)
T 3bg1_A           78 SYDRKVIIWREENGTWEKSHE-----HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG  152 (316)
T ss_dssp             ETTSCEEEECCSSSCCCEEEE-----ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSC
T ss_pred             ECCCEEEEEECCCCcceEEEE-----ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCC
Confidence            999999999998764221111     1137789999999997  78999999999999999987632   2344566678


Q ss_pred             EEEEEecCC-----------------CCeEEEEcCCCcEEEEECCCC---eeeEEEecCCCcceEEEEecCCC----Ccc
Q 016257          157 VLDMDFSLD-----------------SEFLATTSTDGSARIWKTEDG---VAWTFLTRNSDEKIELCRFSKDG----TKP  212 (392)
Q Consensus       157 i~~i~~~~~-----------------~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~~  212 (392)
                      |.+++|+|+                 +++|++++.|++|++||++..   +....+..| ...|.+++|+|++    .. 
T Consensus       153 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h-~~~V~~v~~sp~~~~~~~~-  230 (316)
T 3bg1_A          153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH-SDWVRDVAWAPSIGLPTST-  230 (316)
T ss_dssp             BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC-SSCEEEEECCCCSSCSCCE-
T ss_pred             cceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC-CCceEEEEecCCCCCCCce-
Confidence            999999997                 478999999999999999755   345555544 4589999999986    43 


Q ss_pred             eEEEEEEeCCccEEEEEeCCCce----eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecC
Q 016257          213 FLFCTVQRGDKALLAVYDISTWN----KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (392)
Q Consensus       213 ~~~~~~~~~~d~~i~v~d~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  274 (392)
                          +++++.|+.|++||+++..    ....+..|...|.+++|+|++++|++++.|+.|++|+..
T Consensus       231 ----las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          231 ----IASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             ----EEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             ----EEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence                7999999999999997621    123345678899999999999999999999999999975

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.5e-35  Score=259.01  Aligned_cols=289  Identities=11%  Similarity=0.048  Sum_probs=226.4

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .++|+|++|+|+...-.++++|+.      ++.|++|+++...      ......+.+|.+.|.+++|+|++++|++++.
T Consensus        39 ~~~v~~~~~~~~~~~g~~l~~~~~------dg~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~  106 (368)
T 3mmy_A           39 DDSIGCLSFSPPTLPGNFLIAGSW------ANDVRCWEVQDSG------QTIPKAQQMHTGPVLDVCWSDDGSKVFTASC  106 (368)
T ss_dssp             SSCEEEEEECCTTSSSEEEEEEET------TSEEEEEEECTTS------CEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             CCceEEEEEcCCCCCceEEEEECC------CCcEEEEEcCCCC------ceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence            578999999998400034555544      6779999997422      2333668889999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEe--cCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEE
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF--SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~  161 (392)
                      |+.|++||+.+++....        ..|...|.+++|  ++++++|++++.|+.|++||+++++.+..+..+ ..+.++.
T Consensus       107 dg~v~iwd~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~  177 (368)
T 3mmy_A          107 DKTAKMWDLSSNQAIQI--------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP-ERCYCAD  177 (368)
T ss_dssp             TSEEEEEETTTTEEEEE--------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS-SCEEEEE
T ss_pred             CCcEEEEEcCCCCceee--------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC-CCceEEE
Confidence            99999999988764332        137789999999  899999999999999999999998877665544 4666776


Q ss_pred             ecCCCCeEEEEcCCCcEEEEECCCCeeeE-EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc---eee
Q 016257          162 FSLDSEFLATTSTDGSARIWKTEDGVAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW---NKI  237 (392)
Q Consensus       162 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~---~~~  237 (392)
                      +.+  ..+++++.++.+++|+++...... ...........++.+.++..... ..+++++.|+.|++||++..   ...
T Consensus       178 ~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~i~i~~~~~~~~~~~~  254 (368)
T 3mmy_A          178 VIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKP-TGFALGSIEGRVAIHYINPPNPAKDN  254 (368)
T ss_dssp             EET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCE-EEEEEEETTSEEEEEESSCSCHHHHS
T ss_pred             ecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCC-CeEEEecCCCcEEEEecCCCCccccc
Confidence            664  478888899999999998765433 33333344566777766554311 11688999999999999986   344


Q ss_pred             eeecccCC------------CcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEE
Q 016257          238 GHKRLLRK------------PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLT  305 (392)
Q Consensus       238 ~~~~~~~~------------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  305 (392)
                      ..+..|..            .|++++|+|++++|++++.||.|++||+++++.+..+ ..| ...|++++|+|+|++|++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~-~~~v~~~~~s~~g~~l~~  332 (368)
T 3mmy_A          255 FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS-EQL-DQPISACCFNHNGNIFAY  332 (368)
T ss_dssp             EEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC-CCC-SSCEEEEEECTTSSCEEE
T ss_pred             eeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe-cCC-CCCceEEEECCCCCeEEE
Confidence            55555554            7999999999999999999999999999999988776 477 889999999999999999


Q ss_pred             EeCCCeEEEEEee
Q 016257          306 ASKEWGAMITKLT  318 (392)
Q Consensus       306 ~~~dg~i~iw~~~  318 (392)
                      ++.|+..+.|++.
T Consensus       333 ~s~d~~~~~~~~~  345 (368)
T 3mmy_A          333 ASSYDWSKGHEFY  345 (368)
T ss_dssp             EECCCSTTCGGGC
T ss_pred             Eeccccccccccc
Confidence            9999865555443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=4.4e-35  Score=258.85  Aligned_cols=280  Identities=13%  Similarity=0.090  Sum_probs=210.5

Q ss_pred             EeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEE-EEEeCCCcE
Q 016257           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHL  136 (392)
Q Consensus        58 ~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i  136 (392)
                      .+..|.+.|++++|+|||++|++|+.++ +++|++...+.....         +...+..+++.++++.+ ++++.|++|
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~d~~v   83 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ---------EMRHLSKVRMLHRTNYVAFVTGVKEVV   83 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE---------ECSCCCEEEECTTSSEEEEECSSTTEE
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee---------ecCCeEEEEEcCCCCEEEEEECCccEE
Confidence            4578999999999999999999998776 889998765433221         11247788898888877 567778999


Q ss_pred             EEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCC-eeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (392)
Q Consensus       137 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (392)
                      ++||+.+++.+..+. +...|.++.|+++.  ++++ .|+.|++||++++ +.+..+..    +...+++++  ..  + 
T Consensus        84 ~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~--l-  150 (355)
T 3vu4_A           84 HIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSN--GL--L-  150 (355)
T ss_dssp             EEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--TE--E-
T ss_pred             EEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc----CCceEEEEc--cE--E-
Confidence            999999998877654 56689999999764  4444 3789999999988 66666554    345566777  22  1 


Q ss_pred             EEEE-eCCccEEEEEeCCCce----------------eeeeecccCCCcEEEEECCCCCEEEEEeCCCc-EEEEecCCce
Q 016257          216 CTVQ-RGDKALLAVYDISTWN----------------KIGHKRLLRKPASVLSISLDGKYLAMGSKDGD-ICVVDVKKME  277 (392)
Q Consensus       216 ~~~~-~~~d~~i~v~d~~~~~----------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~  277 (392)
                       ++. ++.++.|++||+++++                .+..+..|...|++++|+|+|++|++|+.|++ |++||+++++
T Consensus       151 -a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~  229 (355)
T 3vu4_A          151 -VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV  229 (355)
T ss_dssp             -EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC
T ss_pred             -EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence             233 7899999999999765                15678899999999999999999999999998 9999999999


Q ss_pred             eeeeeecc-ccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccc---------------eeee---e--------
Q 016257          278 INHWSKRL-HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKE---------------WQIY---S--------  330 (392)
Q Consensus       278 ~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~---~--------  330 (392)
                      .+..+..+ | ...|.+++|+|++++|++++.|+.|++|++......+.               |...   .        
T Consensus       230 ~~~~~~~g~h-~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (355)
T 3vu4_A          230 LVREFRRGLD-RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRG  308 (355)
T ss_dssp             EEEEEECTTC-CSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCC
T ss_pred             EEEEEEcCCC-CCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCc
Confidence            98888645 8 89999999999999999999999999999975532111               1000   0        


Q ss_pred             eeeeeeeeceEEEEeeecceeeeecccccccc
Q 016257          331 LLLALFLASAVVFYIFFENSDSFWNFPVARNQ  362 (392)
Q Consensus       331 ~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~  362 (392)
                      ...........++++..|+.+++|++..++..
T Consensus       309 ~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~  340 (355)
T 3vu4_A          309 CKIAWISESSLVVVWPHTRMIETFKVVFDDEM  340 (355)
T ss_dssp             CEEEESSSSEEEEEETTTTEEEEEEEEEETTT
T ss_pred             eEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCC
Confidence            11111223446777778999999999876543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-35  Score=287.58  Aligned_cols=254  Identities=13%  Similarity=0.104  Sum_probs=209.6

Q ss_pred             EEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC--CCEEEEEeCCC
Q 016257           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDG  134 (392)
Q Consensus        57 ~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg  134 (392)
                      ..+.+|.+.|++++|+|++++|++|+.||.|++||+.+.........     ..|.++|.+++|+|+  +++|++|+.||
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-----~~h~~~V~~l~~s~~~~~~~l~s~s~Dg   77 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-----TGHEGPVWRVDWAHPKFGTILASCSYDG   77 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-----cCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence            45789999999999999999999999999999999985432111111     137889999999987  99999999999


Q ss_pred             cEEEEeCCCCc--eeecccCCCCcEEEEEecCC--CCeEEEEcCCCcEEEEECCCCee--eEEEecCCCcceEEEEecCC
Q 016257          135 HLRIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKD  208 (392)
Q Consensus       135 ~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~--~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~  208 (392)
                      .|++||+.+++  .......|...|.+++|+|+  ++.+++++.||.|++||++++..  ...+.. +...|.+++|+|.
T Consensus        78 ~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~-~~~~v~~l~~~p~  156 (753)
T 3jro_A           78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA-HAIGVNSASWAPA  156 (753)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEEC-CSSCEEEEEECCC
T ss_pred             eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeec-CCCceEEEEecCc
Confidence            99999999886  56666778889999999999  99999999999999999987732  333333 4558999999994


Q ss_pred             -------------CCcceEEEEEEeCCccEEEEEeCCCc----eeeeeecccCCCcEEEEECCC---CCEEEEEeCCCcE
Q 016257          209 -------------GTKPFLFCTVQRGDKALLAVYDISTW----NKIGHKRLLRKPASVLSISLD---GKYLAMGSKDGDI  268 (392)
Q Consensus       209 -------------~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i  268 (392)
                                   +..     +++++.|+.|++||++++    .....+..|...|++++|+|+   +++|++++.||.|
T Consensus       157 ~~~~~~~~~~~~d~~~-----l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I  231 (753)
T 3jro_A          157 TIEEDGEHNGTKESRK-----FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC  231 (753)
T ss_dssp             C---------CGGGCC-----EEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCE
T ss_pred             ccccccccccCCCCCE-----EEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEE
Confidence                         665     799999999999999876    455677789999999999999   8999999999999


Q ss_pred             EEEecCCceee----eeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257          269 CVVDVKKMEIN----HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       269 ~iwd~~~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                      ++||+.+++..    ......| ...|++++|+|+|++|++++.||.|++|++.....
T Consensus       232 ~iwd~~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~  288 (753)
T 3jro_A          232 IIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK  288 (753)
T ss_dssp             EEEEESSSSSCCBCCBSSSSCC-SSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred             EEecCCCCCCcceeEEeccCCC-CCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence            99999986421    1111346 78999999999999999999999999999986543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.5e-34  Score=259.22  Aligned_cols=273  Identities=12%  Similarity=0.112  Sum_probs=219.8

Q ss_pred             CeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 016257           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL  144 (392)
Q Consensus        65 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~  144 (392)
                      ..+.|+||++ +.|++| .|++|+|||..+++....+...     .|...|++++|+|+|++|++|+.||.|++||++++
T Consensus       107 y~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~-----~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~  179 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQME-----QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ  179 (420)
T ss_dssp             TCBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECC-----STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             cceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEec-----CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC
Confidence            4677999975 577776 4899999999988755444322     36778999999999999999999999999999999


Q ss_pred             ceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee-eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCc
Q 016257          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (392)
Q Consensus       145 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (392)
                      +.+..+..|...+.+++++  +..|++++.|+.+++||.+.... +..+..+ ...+..+.++|++..     +++++.|
T Consensus       180 ~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h-~~~~~~~~~~~~g~~-----l~s~~~D  251 (420)
T 4gga_A          180 KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGH-SQEVCGLRWAPDGRH-----LASGGND  251 (420)
T ss_dssp             EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECC-SSCEEEEEECTTSSE-----EEEEETT
T ss_pred             cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEeccc-ccceeeeeecCCCCe-----eeeeecc
Confidence            9998888888899988875  67999999999999999987544 4455544 557999999999997     8999999


Q ss_pred             cEEEEEeCCCcee----eeeecccCCCcEEEEECCCC-CEEEE--EeCCCcEEEEecCCceeeeeeeccccCcceEEEEE
Q 016257          224 ALLAVYDISTWNK----IGHKRLLRKPASVLSISLDG-KYLAM--GSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF  296 (392)
Q Consensus       224 ~~i~v~d~~~~~~----~~~~~~~~~~v~~~~~s~~~-~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  296 (392)
                      +.+++||..+++.    +.....+...|.+++|+|++ .++++  |+.|+.|++||+.+++....+..   ...+.++.|
T Consensus       252 ~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~---~~~v~~~~~  328 (420)
T 4gga_A          252 NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA---HSQVCSILW  328 (420)
T ss_dssp             SCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC---SSCEEEEEE
T ss_pred             ccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc---ccceeeeee
Confidence            9999999987653    34566788899999999975 55555  45799999999999998887642   568999999


Q ss_pred             eeCCCeEEEEe--CCCeEEEEEeecCccccc--------eeeeeeeeeeeeeceEEEEeeecceeeeecccccc
Q 016257          297 CPTQRVVLTAS--KEWGAMITKLTVPADWKE--------WQIYSLLLALFLASAVVFYIFFENSDSFWNFPVAR  360 (392)
Q Consensus       297 s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~  360 (392)
                      +|+++.+++++  .|+.|++|++........        ..+.+.+     ....+++++.|++|++|++...+
T Consensus       329 ~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-----dg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          329 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-----DGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-----TSSCEEEEETTTEEEEECCSCSS
T ss_pred             cCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-----CCCEEEEEecCCeEEEEECCCCC
Confidence            99999888765  789999999976544322        2222222     34467888899999999997554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-35  Score=256.62  Aligned_cols=267  Identities=10%  Similarity=0.066  Sum_probs=206.3

Q ss_pred             EEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC-------
Q 016257           70 AVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP-------  142 (392)
Q Consensus        70 ~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~-------  142 (392)
                      .+.++++.|++|+.||.|++||+.+++....+.         ...|.++.|+|+   +++++.|++|++|+..       
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---------~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~  110 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---------TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILD  110 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---------EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---------cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEee
Confidence            344578899999999999999999887655543         235677788887   9999999999999665       


Q ss_pred             --CCceeeccc-CCCCcEEEEEecC--CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEE
Q 016257          143 --SLRIILDEP-KAHKSVLDMDFSL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (392)
Q Consensus       143 --~~~~~~~~~-~~~~~i~~i~~~~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (392)
                        +++.+.... .|...|.+++|+|  +++++++++.|++|++||+++++.......++...+.+++|+|++..     +
T Consensus       111 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~-----l  185 (343)
T 3lrv_A          111 SKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLL-----L  185 (343)
T ss_dssp             TTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCE-----E
T ss_pred             cCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCE-----E
Confidence              444333333 4456899999999  99999999999999999999998877666666667999999999997     7


Q ss_pred             EEeCCccEEEEEeCCCceee-eeecc-cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec--cccCcce--
Q 016257          218 VQRGDKALLAVYDISTWNKI-GHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR--LHLGTSI--  291 (392)
Q Consensus       218 ~~~~~d~~i~v~d~~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~i--  291 (392)
                      ++++.|+.|++||+++++.+ ..+.. |..+|++++|+|++.+|++++ |+.|++||+++++....+..  .| ...+  
T Consensus       186 asg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~  263 (343)
T 3lrv_A          186 ALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIP-EFKTGT  263 (343)
T ss_dssp             EEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC------CC
T ss_pred             EEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccc-cccccc
Confidence            88999999999999998877 67777 899999999999999999999 55999999999876544321  12 2333  


Q ss_pred             EEEEEeeCCCeEEEEeC-CCeEEEEEeecCccccceee----eeeeeeeeeeceEEEEeeecceeeeeccc
Q 016257          292 ALVEFCPTQRVVLTASK-EWGAMITKLTVPADWKEWQI----YSLLLALFLASAVVFYIFFENSDSFWNFP  357 (392)
Q Consensus       292 ~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~i~~W~~~  357 (392)
                      .+++|+|+|++|++++. |+.+++|++.....  .|..    ......+......+++++.|+.++++-..
T Consensus       264 ~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          264 VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK--NWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTC--SEEEEEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             eEEEECCCCCEEEEecCCCCcEEEEEEccccc--ceEecCceeEecCccccccceeEEEecCCceEEEEec
Confidence            46999999999999998 99999999975433  3443    11111111234467777789988887643

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6.6e-35  Score=258.54  Aligned_cols=280  Identities=13%  Similarity=0.026  Sum_probs=203.6

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCC-------eEEEEEEeCCccceeec---cccCCCCCCCCCeEEEEecCCCCEEEEEe-
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNG-------GCKLFEVYGGATDINLL---AKKMPPLQDAGPQKCLSFSVDGSRFAAGG-  131 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~-------~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-  131 (392)
                      .-+|++++|+||+++|++|+.+.       .|++|++..........   ........|...+.+++++  ++.+++|. 
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~   91 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN   91 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence            45899999999999999987543       59999997664321110   0111112356677777664  55666653 


Q ss_pred             ----------CCCcEEEEeCCCCceeec------c---cCCCCcEEEEEecCCCCeEEEE--cCCCcEEEEECCCCeeeE
Q 016257          132 ----------VDGHLRIMHWPSLRIILD------E---PKAHKSVLDMDFSLDSEFLATT--STDGSARIWKTEDGVAWT  190 (392)
Q Consensus       132 ----------~dg~i~i~d~~~~~~~~~------~---~~~~~~i~~i~~~~~~~~l~~~--~~d~~i~vwd~~~~~~~~  190 (392)
                                .|+.+++|++.+......      .   ..+...+..++|+|||++++++  +.|++|++||+++++++.
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~  171 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF  171 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence                      577899999865432211      1   1122358899999999997654  478999999999999988


Q ss_pred             EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeee--eecccCCCcEEEEECCCCCEEEEEeCCC--
Q 016257          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG--HKRLLRKPASVLSISLDGKYLAMGSKDG--  266 (392)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg--  266 (392)
                      .+.  +...|.+++|+|+++.     +++++. +.+.+|+..+++.+.  ....|...+.+++|+|+++++++++.|+  
T Consensus       172 ~~~--~~~~V~~v~fspdg~~-----l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~  243 (365)
T 4h5i_A          172 EIE--TRGEVKDLHFSTDGKV-----VAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGK  243 (365)
T ss_dssp             EEE--CSSCCCEEEECTTSSE-----EEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSC
T ss_pred             EeC--CCCceEEEEEccCCce-----EEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcc
Confidence            876  3346999999999996     566664 456677776666543  3345677899999999999999999887  


Q ss_pred             --cEEEEecCCceeee---eeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccc---------ceeeeeee
Q 016257          267 --DICVVDVKKMEINH---WSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWK---------EWQIYSLL  332 (392)
Q Consensus       267 --~i~iwd~~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~---------~~~~~~~~  332 (392)
                        .+++|++.......   .....| ...|++++|+|||++||+|+.|++|+|||+...+...         +..+.+++
T Consensus       244 ~~~i~~~~~~~~~~~~~~~~~~~~~-~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp  322 (365)
T 4h5i_A          244 GIVLTKISIKSGNTSVLRSKQVTNR-FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISP  322 (365)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEESS-CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECT
T ss_pred             eeEEeecccccceecceeeeeecCC-CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECC
Confidence              58889987765322   122467 7899999999999999999999999999997654322         23333443


Q ss_pred             eeeeeeceEEEEeeecceeeeecccc
Q 016257          333 LALFLASAVVFYIFFENSDSFWNFPV  358 (392)
Q Consensus       333 ~~~~~~~~~~~~~~~d~~i~~W~~~~  358 (392)
                           ....+++++.|++||||+++.
T Consensus       323 -----dg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          323 -----DSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             -----TSCEEEEEETTSEEEEEECCT
T ss_pred             -----CCCEEEEEeCCCeEEEEEcCC
Confidence                 344677888999999999964

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=5.7e-34  Score=250.84  Aligned_cols=260  Identities=14%  Similarity=0.100  Sum_probs=206.3

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC--CCCeEEEE
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCS   81 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~~~~l~~~   81 (392)
                      .++|+|++|+|++.   ++++|+.      ++.|++|+++....    .......+.+|...|++++|+|  ++++|+++
T Consensus        11 ~~~v~~~~~~~~~~---~l~~~~~------dg~i~iw~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~   77 (351)
T 3f3f_A           11 DDLVHDVVYDFYGR---HVATCSS------DQHIKVFKLDKDTS----NWELSDSWRAHDSSIVAIDWASPEYGRIIASA   77 (351)
T ss_dssp             SSCEEEEEECSSSS---EEEEEET------TSEEEEEEECSSSC----CEEEEEEEECCSSCEEEEEECCGGGCSEEEEE
T ss_pred             ccceeEEEEcCCCC---EEEEeeC------CCeEEEEECCCCCC----cceecceeccCCCcEEEEEEcCCCCCCEEEEE
Confidence            46899999999884   4555544      67899999975432    1234567889999999999999  69999999


Q ss_pred             eCCCeEEEEEEeCCccceeec--cccCCCCCCCCCeEEEEecCC--CCEEEEEeCCCcEEEEeCCCCceeeccc------
Q 016257           82 TTNGGCKLFEVYGGATDINLL--AKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRIILDEP------  151 (392)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~------  151 (392)
                      +.|+.|++||+..++......  ........|...|.+++|+|+  +++|++++.|+.|++||+++++.+..+.      
T Consensus        78 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  157 (351)
T 3f3f_A           78 SYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK  157 (351)
T ss_dssp             ETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred             cCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence            999999999998764211000  000011137789999999999  9999999999999999998876543322      


Q ss_pred             -------CCCCcEEEEEecCC---CCeEEEEcCCCcEEEEECCCCee--eEEEecCCCcceEEEEecCCC----CcceEE
Q 016257          152 -------KAHKSVLDMDFSLD---SEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDG----TKPFLF  215 (392)
Q Consensus       152 -------~~~~~i~~i~~~~~---~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~~~~~  215 (392)
                             .+...+.+++|+|+   +.++++++.|+.+.+|+...++.  ...+.. +...|.+++|+|++    ..    
T Consensus       158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~~p~~~~~~~~----  232 (351)
T 3f3f_A          158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPG-HKSLIRSISWAPSIGRWYQL----  232 (351)
T ss_dssp             SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCC-CCSCEEEEEECCCSSCSSEE----
T ss_pred             ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCC-CCcceeEEEECCCCCCcceE----
Confidence                   45568999999997   89999999999998888877765  444444 45589999999998    44    


Q ss_pred             EEEEeCCccEEEEEeCCCc----------------------------------------------eeeeeecccCCCcEE
Q 016257          216 CTVQRGDKALLAVYDISTW----------------------------------------------NKIGHKRLLRKPASV  249 (392)
Q Consensus       216 ~~~~~~~d~~i~v~d~~~~----------------------------------------------~~~~~~~~~~~~v~~  249 (392)
                       +++++.|+.|++||++.+                                              +.+..+..|...|++
T Consensus       233 -l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  311 (351)
T 3f3f_A          233 -IATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWS  311 (351)
T ss_dssp             -EEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEE
T ss_pred             -EEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEE
Confidence             789999999999999874                                              556667788999999


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEecCCceeeeee
Q 016257          250 LSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (392)
Q Consensus       250 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  282 (392)
                      ++|+|++++|++++.||.|++||+.+++....+
T Consensus       312 ~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          312 VSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             EEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             EEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence            999999999999999999999999987655443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-34  Score=252.72  Aligned_cols=248  Identities=11%  Similarity=0.114  Sum_probs=201.0

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCC--CCeEEEE
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVCS   81 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--~~~l~~~   81 (392)
                      .++|++++|+|++.   ++++|+.      ++.|++|.++..      .......+.+|.+.|++++|+|+  +++|+++
T Consensus        11 ~~~v~~~~~s~~~~---~l~~~~~------dg~i~iw~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~   75 (379)
T 3jrp_A           11 NELIHDAVLDYYGK---RLATCSS------DKTIKIFEVEGE------THKLIDTLTGHEGPVWRVDWAHPKFGTILASC   75 (379)
T ss_dssp             CCCEEEEEECSSSS---EEEEEET------TSCEEEEEEETT------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred             cccEEEEEEcCCCC---EEEEEEC------CCcEEEEecCCC------cceeeeEecCCCCcEEEEEeCCCCCCCEEEEe
Confidence            46899999999984   4555444      677999999733      23445678899999999999987  8999999


Q ss_pred             eCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC--CCEEEEEeCCCcEEEEeCCCCc--eeecccCCCCcE
Q 016257           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKSV  157 (392)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i  157 (392)
                      +.||.|++||+.+++.......     ..|...|.+++|+|+  +++|++++.|+.|++||++++.  ....+..|...|
T Consensus        76 ~~dg~v~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v  150 (379)
T 3jrp_A           76 SYDGKVLIWKEENGRWSQIAVH-----AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV  150 (379)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCE
T ss_pred             ccCCEEEEEEcCCCceeEeeee-----cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCce
Confidence            9999999999998762221111     126789999999999  9999999999999999998773  333455677799


Q ss_pred             EEEEecC-------------CCCeEEEEcCCCcEEEEECCCCee----eEEEecCCCcceEEEEecCC---CCcceEEEE
Q 016257          158 LDMDFSL-------------DSEFLATTSTDGSARIWKTEDGVA----WTFLTRNSDEKIELCRFSKD---GTKPFLFCT  217 (392)
Q Consensus       158 ~~i~~~~-------------~~~~l~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~  217 (392)
                      .+++|+|             ++++|++++.|+.|++||+++++.    ...+.. +...|.+++|+|+   +..     +
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~-----l  224 (379)
T 3jrp_A          151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG-HSDWVRDVAWSPTVLLRSY-----L  224 (379)
T ss_dssp             EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC-CSSCEEEEEECCCCSSSEE-----E
T ss_pred             EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec-ccCcEeEEEECCCCCCCCe-----E
Confidence            9999999             699999999999999999987643    334443 4558999999999   665     7


Q ss_pred             EEeCCccEEEEEeCCCce-----eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce
Q 016257          218 VQRGDKALLAVYDISTWN-----KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (392)
Q Consensus       218 ~~~~~d~~i~v~d~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  277 (392)
                      ++++.|+.|++||++++.     .......+...+.+++|+|++++|++++.||.|++||+....
T Consensus       225 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          225 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred             EEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence            899999999999999863     223334477899999999999999999999999999998543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.8e-34  Score=258.51  Aligned_cols=241  Identities=11%  Similarity=0.043  Sum_probs=174.6

Q ss_pred             EEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC--------CCCEEEEEeCCCcEEEE
Q 016257           68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--------DGSRFAAGGVDGHLRIM  139 (392)
Q Consensus        68 ~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--------~~~~l~~~~~dg~i~i~  139 (392)
                      ...+++++.+|++++.|++|+|||...++.......  .....|.+.|++++|+|        |+++|++++.|++|++|
T Consensus        94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~--~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W  171 (393)
T 4gq1_A           94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVL--GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW  171 (393)
T ss_dssp             ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEE--CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred             eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeee--cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence            333445566899999999999999998764332221  12235889999999998        78999999999999999


Q ss_pred             eCCCCceeecccCCCCcEEEEEecCCCC-eEEEEcCCCcEEEEECCCCeeeEEEe------------------------c
Q 016257          140 HWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLT------------------------R  194 (392)
Q Consensus       140 d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~------------------------~  194 (392)
                      |++++.+......|+..+.+++|+|++. +|++++.|++|++||+++++......                        .
T Consensus       172 d~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  251 (393)
T 4gq1_A          172 RLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS  251 (393)
T ss_dssp             EEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred             ECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence            9998888888888999999999999874 79999999999999998876543321                        1


Q ss_pred             CCCcceEEEEec-CCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEE------------------EECC-
Q 016257          195 NSDEKIELCRFS-KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVL------------------SISL-  254 (392)
Q Consensus       195 ~~~~~v~~~~~~-~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~------------------~~s~-  254 (392)
                      .+...+.++.|+ |++..     +++++.|+.+++||+..++....+..+...+..+                  .++| 
T Consensus       252 ~~~~~v~~v~~~~~dg~~-----l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (393)
T 4gq1_A          252 GIASSLANVRWIGSDGSG-----ILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR  326 (393)
T ss_dssp             CCSSSCSEEEEETTTTCE-----EEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred             cccccceeeeeecCCCCE-----EEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence            233467788886 78886     7899999999999998876555444443333332                  2333 


Q ss_pred             -CCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          255 -DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       255 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                       ++.++++|+.||.|++||+.+++..... ..| ..+|.+++|+|||++||+++.+ .+.+|++.
T Consensus       327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~-~~~-~~~V~svafspdG~~LA~as~~-Gv~lvrL~  388 (393)
T 4gq1_A          327 YMDYFATAHSQHGLIQLINTYEKDSNSIP-IQL-GMPIVDFCWHQDGSHLAIATEG-SVLLTRLM  388 (393)
T ss_dssp             CTTEEEEEETTTTEEEEEETTCTTCCEEE-EEC-SSCEEEEEECTTSSEEEEEESS-EEEEEEEG
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEEEEe-cCC-CCcEEEEEEcCCCCEEEEEeCC-CeEEEEEe
Confidence             3446778889999999999998877665 456 7899999999999999999876 57777664

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.7e-32  Score=238.64  Aligned_cols=271  Identities=11%  Similarity=0.089  Sum_probs=214.7

Q ss_pred             eeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 016257           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR  145 (392)
Q Consensus        66 v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  145 (392)
                      .++|+||+++ +||+| .|++|+|||+.+++....+...     .|...|.+++|+|++++|++|+.||+|++||+++++
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~-----~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~  100 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQME-----QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK  100 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECC-----STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEec-----CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce
Confidence            5789999886 77765 5899999999988765544322     367889999999999999999999999999999999


Q ss_pred             eeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccE
Q 016257          146 IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (392)
Q Consensus       146 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~  225 (392)
                      .+.....|...+.++.+  ++..+++++.++.+++|+.............+...+..+.+++++..     +++++.|+.
T Consensus       101 ~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~s~~~d~~  173 (318)
T 4ggc_A          101 RLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-----LASGGNDNL  173 (318)
T ss_dssp             EEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE-----EEEEETTSC
T ss_pred             eEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCE-----EEEEecCcc
Confidence            98888888777776555  46799999999999999998765544333444558999999999997     789999999


Q ss_pred             EEEEeCCCcee----eeeecccCCCcEEEEECCCCCE---EEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEee
Q 016257          226 LAVYDISTWNK----IGHKRLLRKPASVLSISLDGKY---LAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (392)
Q Consensus       226 i~v~d~~~~~~----~~~~~~~~~~v~~~~~s~~~~~---l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  298 (392)
                      |++||+++++.    ......+...+.+++++|++..   +++++.++.|++||..........  .+ ...+..+.|+|
T Consensus       174 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~--~~-~~~v~~~~~~~  250 (318)
T 4ggc_A          174 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--DA-HSQVCSILWSP  250 (318)
T ss_dssp             EEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE--EC-SSCEEEEEEET
T ss_pred             eeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc--cc-eeeeeeeeecc
Confidence            99999987653    2344556778999999997653   345678899999999988876654  34 67899999999


Q ss_pred             CCCeEEEEe--CCCeEEEEEeecCccccce--------eeeeeeeeeeeeceEEEEeeecceeeeecccc
Q 016257          299 TQRVVLTAS--KEWGAMITKLTVPADWKEW--------QIYSLLLALFLASAVVFYIFFENSDSFWNFPV  358 (392)
Q Consensus       299 ~~~~l~~~~--~dg~i~iw~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~  358 (392)
                      ++..+++++  .|+.|++|++.........        .+.+.+     ....+++++.|++|++||+..
T Consensus       251 ~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp-----dg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          251 HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-----DGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-----TSSCEEEEETTTEEEEECCSC
T ss_pred             cccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-----CCCEEEEEecCCeEEEEECCC
Confidence            999887765  7999999999865443322        222222     344678888999999999864

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-33  Score=254.16  Aligned_cols=246  Identities=9%  Similarity=-0.051  Sum_probs=200.9

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCc---cceeeccccC----------------------------------
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA---TDINLLAKKM----------------------------------  106 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~---~~~~~~~~~~----------------------------------  106 (392)
                      .++.+++|+|+|++|+++ .++.|++||+.+++   ..........                                  
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            578999999999966665 57789999999887   3222211000                                  


Q ss_pred             -------------CCCCCCCCeEEEEecCCCCEE-EEEeCCCcEEEEeCC--CCceeeccc--CCCCcEEEEEecCCCCe
Q 016257          107 -------------PPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWP--SLRIILDEP--KAHKSVLDMDFSLDSEF  168 (392)
Q Consensus       107 -------------~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~--~~~~~~~~~--~~~~~i~~i~~~~~~~~  168 (392)
                                   ....|.+.|.+++|+|++++| ++++.||.|++||+.  +++....+.  .+...|.+++|+|++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence                         001244579999999999996 889999999999998  777766554  44568999999999999


Q ss_pred             EEEEcCCCcEEEEECCCCeeeE----EEecCCCcceEEEEecCC---CCcceEEEEEEeCCccEEEEEeCCCceeeee-e
Q 016257          169 LATTSTDGSARIWKTEDGVAWT----FLTRNSDEKIELCRFSKD---GTKPFLFCTVQRGDKALLAVYDISTWNKIGH-K  240 (392)
Q Consensus       169 l~~~~~d~~i~vwd~~~~~~~~----~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~  240 (392)
                      |++++.++.+++|++.+++...    .+..+ ...|.+++|+|+   +..     +++++.|+.|++||+++++.+.. +
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~-----l~s~~~d~~i~vwd~~~~~~~~~~~  237 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEKFTQEPILGH-VSMLTDVHLIKDSDGHQF-----IITSDRDEHIKISHYPQCFIVDKWL  237 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSSCCCCCSEEC-SSCEEEEEEEECTTSCEE-----EEEEETTSCEEEEEESCTTCEEEEC
T ss_pred             EEEEeCCCcEEEEecCCcccccccceeeecc-cCceEEEEEcCCCCCCcE-----EEEEcCCCcEEEEECCCCceeeeee
Confidence            9999999999999998876543    45544 458999999999   765     78999999999999999887766 5


Q ss_pred             cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecc-----------------------ccCcceEEEEEe
Q 016257          241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL-----------------------HLGTSIALVEFC  297 (392)
Q Consensus       241 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~i~~~~~s  297 (392)
                      ..|...|.+++|+ ++++|++++.|+.|++||+++++.+..+...                       .....|.+++|+
T Consensus       238 ~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  316 (450)
T 2vdu_B          238 FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS  316 (450)
T ss_dssp             CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred             cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence            5789999999999 9999999999999999999999877665311                       113579999999


Q ss_pred             eCCCeEEEEe-CCCeEEEEEe
Q 016257          298 PTQRVVLTAS-KEWGAMITKL  317 (392)
Q Consensus       298 ~~~~~l~~~~-~dg~i~iw~~  317 (392)
                      |++++|++++ .|+.|++|++
T Consensus       317 ~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          317 KNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             SSSSEEEEEETTCSEEEEEEE
T ss_pred             CCCCEEEEEECCCCeEEEEEe
Confidence            9999999999 8999999999

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.8e-33  Score=249.67  Aligned_cols=284  Identities=15%  Similarity=0.149  Sum_probs=215.1

Q ss_pred             eEEEeeCCCCCeeEEEEcCC---CCeEEEEeCCCeEEEEEEeC-CccceeeccccCCCCCCCCCeEEEEecCCCCEEEEE
Q 016257           55 VTYVFDESEGDPMTIAVNPS---GDDFVCSTTNGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG  130 (392)
Q Consensus        55 ~~~~~~~h~~~v~~~~~sp~---~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  130 (392)
                      ....+.+|.+.|++++|+|+   |++|++|+.||.|++||+.+ +........      .|...|.+++|+|++++|+++
T Consensus        31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~s~  104 (368)
T 3mmy_A           31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ------MHTGPVLDVCWSDDGSKVFTA  104 (368)
T ss_dssp             CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE------ECSSCEEEEEECTTSSEEEEE
T ss_pred             eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec------cccCCEEEEEECcCCCEEEEE
Confidence            44567899999999999999   59999999999999999987 332212221      277899999999999999999


Q ss_pred             eCCCcEEEEeCCCCceeecccCCCCcEEEEEe--cCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCC
Q 016257          131 GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF--SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD  208 (392)
Q Consensus       131 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (392)
                      +.||.|++||+++++... ...|...|.+++|  +|++++|++++.|+.|++||+++++.+..+..+.  .+.++.+.++
T Consensus       105 ~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~  181 (368)
T 3mmy_A          105 SCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE--RCYCADVIYP  181 (368)
T ss_dssp             ETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS--CEEEEEEETT
T ss_pred             cCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC--CceEEEecCC
Confidence            999999999999887664 5667789999999  8999999999999999999999999888887553  5667776654


Q ss_pred             CCcceEEEEEEeCCccEEEEEeCCCceeeeee--cccCCCcEEEEECCCCCE----EEEEeCCCcEEEEecCCce---ee
Q 016257          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHK--RLLRKPASVLSISLDGKY----LAMGSKDGDICVVDVKKME---IN  279 (392)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~----l~~~~~dg~i~iwd~~~~~---~~  279 (392)
                        .     ++.++.++.+.+||++........  ........++++.++...    +++++.||.|++||++...   ..
T Consensus       182 --~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~  254 (368)
T 3mmy_A          182 --M-----AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN  254 (368)
T ss_dssp             --E-----EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS
T ss_pred             --e-----eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc
Confidence              3     577778999999999876443222  223456677777665544    9999999999999998863   33


Q ss_pred             eeeeccccCc------------ceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceee---eeeeeeeeeeceEEEE
Q 016257          280 HWSKRLHLGT------------SIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI---YSLLLALFLASAVVFY  344 (392)
Q Consensus       280 ~~~~~~~~~~------------~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  344 (392)
                      ..+ ..| ..            .|++++|+|++++|++++.||.|++|++...........   .............+++
T Consensus       255 ~~~-~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  332 (368)
T 3mmy_A          255 FTF-KCH-RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAY  332 (368)
T ss_dssp             EEE-ECS-EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEE
T ss_pred             eee-eee-ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEE
Confidence            333 344 33            799999999999999999999999999986544322211   0111111123446677


Q ss_pred             eeecceeeeecc
Q 016257          345 IFFENSDSFWNF  356 (392)
Q Consensus       345 ~~~d~~i~~W~~  356 (392)
                      ++.|+..+.|++
T Consensus       333 ~s~d~~~~~~~~  344 (368)
T 3mmy_A          333 ASSYDWSKGHEF  344 (368)
T ss_dssp             EECCCSTTCGGG
T ss_pred             Eecccccccccc
Confidence            776765444443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.2e-32  Score=243.22  Aligned_cols=282  Identities=12%  Similarity=0.095  Sum_probs=211.5

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeE-EEEe
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCST   82 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l-~~~~   82 (392)
                      ..+|+|++|+|++.   ++++|+.       +.+++|..++.        ......  +...+..+++.++++.+ ++++
T Consensus        19 ~~~V~~v~fs~dg~---~la~g~~-------~~~~iw~~~~~--------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   78 (355)
T 3vu4_A           19 SNPVTDYEFNQDQS---CLILSTL-------KSFEIYNVHPV--------AHIMSQ--EMRHLSKVRMLHRTNYVAFVTG   78 (355)
T ss_dssp             CCCCCEEEECTTSS---EEEEECS-------SEEEEEEETTE--------EEEEEE--ECSCCCEEEECTTSSEEEEECS
T ss_pred             CCceEEEEECCCCC---EEEEEcC-------CEEEEEecCCc--------ceeeee--ecCCeEEEEEcCCCCEEEEEEC
Confidence            46899999999984   5665544       34789987632        112222  22358889999988877 4677


Q ss_pred             CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC-ceeecccCCCCcEEEEE
Q 016257           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-RIILDEPKAHKSVLDMD  161 (392)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~i~  161 (392)
                      .|++|++||..+++....+.        +...|.+++|+++.  ++++ .|+.|++||+.++ +.+..+..   +...++
T Consensus        79 ~d~~v~iWd~~~~~~~~~~~--------~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~  144 (355)
T 3vu4_A           79 VKEVVHIWDDVKKQDVSRIK--------VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCE  144 (355)
T ss_dssp             STTEEEEEETTTTEEEEEEE--------CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEE
T ss_pred             CccEEEEEECCCCcEEEEEE--------CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEE
Confidence            88999999998887554432        45689999998864  4444 3789999999987 55544433   444556


Q ss_pred             ecCCCCeEEE--EcCCCcEEEEECCCCe---------------e-eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCc
Q 016257          162 FSLDSEFLAT--TSTDGSARIWKTEDGV---------------A-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (392)
Q Consensus       162 ~~~~~~~l~~--~~~d~~i~vwd~~~~~---------------~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (392)
                      +++  .++++  ++.||.|++||+++++               + +..+..| ...|.+++|+|++..     +++++.|
T Consensus       145 ~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h-~~~v~~~~~s~~g~~-----l~s~s~d  216 (355)
T 3vu4_A          145 FSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH-TNPIKMVRLNRKSDM-----VATCSQD  216 (355)
T ss_dssp             EET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCC-SSCEEEEEECTTSSE-----EEEEETT
T ss_pred             EEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc-CCceEEEEECCCCCE-----EEEEeCC
Confidence            676  56666  5889999999998765               1 4556554 558999999999997     8999999


Q ss_pred             cE-EEEEeCCCceeeeeec-c-cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeee-------------------
Q 016257          224 AL-LAVYDISTWNKIGHKR-L-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW-------------------  281 (392)
Q Consensus       224 ~~-i~v~d~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------------  281 (392)
                      ++ |++||+++++.+..+. + |...|.+++|+|++++|++++.|++|++||++.......                   
T Consensus       217 ~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (355)
T 3vu4_A          217 GTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLC  296 (355)
T ss_dssp             CSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSE
T ss_pred             CCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccccee
Confidence            98 9999999999988887 4 899999999999999999999999999999976532110                   


Q ss_pred             ---eeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceee
Q 016257          282 ---SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI  328 (392)
Q Consensus       282 ---~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  328 (392)
                         +...+ ......++|+++++.|++++.||.+++|++......+.+..
T Consensus       297 ~~~~~~~~-~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~~~~~~  345 (355)
T 3vu4_A          297 NFKLSVDK-HVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEMERWLI  345 (355)
T ss_dssp             EEECCCCT-TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTTTEEEE
T ss_pred             EEEeccCC-CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCCceEEE
Confidence               00011 22346799999999999999999999999987766555443

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.5e-32  Score=249.65  Aligned_cols=285  Identities=12%  Similarity=0.110  Sum_probs=225.3

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      +..+.+++|+|++   .++++++.      ++.|.+|+.+...  .. .......+.+|.+.|.+++|+|+++++++++.
T Consensus       122 ~~~~~~~~~s~~~---~~~~~~~~------~~~i~~~d~~~g~--~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~  189 (433)
T 3bws_A          122 GFQPKSVRFIDNT---RLAIPLLE------DEGMDVLDINSGQ--TV-RLSPPEKYKKKLGFVETISIPEHNELWVSQMQ  189 (433)
T ss_dssp             SSCBCCCEESSSS---EEEEEBTT------SSSEEEEETTTCC--EE-EECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG
T ss_pred             CCCceEEEEeCCC---eEEEEeCC------CCeEEEEECCCCe--Ee-eecCcccccccCCceeEEEEcCCCEEEEEECC
Confidence            3456789999944   45555444      4568888765321  10 00000135689999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEE-eCCCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~  162 (392)
                      |+.|++||+.+++....+.       .|...+.+++|+|++++++++ +.|+.|++||+++++....+.. ...+.+++|
T Consensus       190 d~~v~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~  261 (433)
T 3bws_A          190 ANAVHVFDLKTLAYKATVD-------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLL  261 (433)
T ss_dssp             GTEEEEEETTTCCEEEEEE-------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEE
T ss_pred             CCEEEEEECCCceEEEEEc-------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEE
Confidence            9999999998776554443       256789999999999988554 4799999999999887665544 456999999


Q ss_pred             cCCCCeEEEEc--------CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc
Q 016257          163 SLDSEFLATTS--------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (392)
Q Consensus       163 ~~~~~~l~~~~--------~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~  234 (392)
                      +|+++++++++        .|+.|++||+++++....+..  ...+.+++|+|+++.+    +++++.++.|++||++++
T Consensus       262 ~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l----~~~~~~~~~v~v~d~~~~  335 (433)
T 3bws_A          262 SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP--PGNKRHIVSGNTENKI----YVSDMCCSKIEVYDLKEK  335 (433)
T ss_dssp             CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE--EECEEEEEECSSTTEE----EEEETTTTEEEEEETTTT
T ss_pred             cCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC--CCCcceEEECCCCCEE----EEEecCCCEEEEEECCCC
Confidence            99999999887        488999999999887776642  2368899999999862    467789999999999998


Q ss_pred             eeeeeecccCCCcEEEEECCCCCEEEEEeC---------------CCcEEEEecCCceeeeeeeccccCcceEEEEEeeC
Q 016257          235 NKIGHKRLLRKPASVLSISLDGKYLAMGSK---------------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (392)
Q Consensus       235 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  299 (392)
                      +.+..+. +...+.+++|+|+|+++++++.               ||.|++||+.+++....+..   ...+.+++|+|+
T Consensus       336 ~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~d  411 (433)
T 3bws_A          336 KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---GNQPTGLDVSPD  411 (433)
T ss_dssp             EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---SSSEEEEEECTT
T ss_pred             cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---CCCCceEEEcCC
Confidence            8776665 5678999999999999988876               57999999999998877643   457999999999


Q ss_pred             CCeEEEEeC-CCeEEEEEee
Q 016257          300 QRVVLTASK-EWGAMITKLT  318 (392)
Q Consensus       300 ~~~l~~~~~-dg~i~iw~~~  318 (392)
                      |++|++++. |+.|++|+++
T Consensus       412 g~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          412 NRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             SCEEEEEETTTTEEEEEEET
T ss_pred             CCEEEEEECCCCeEEEEEec
Confidence            999988875 9999999986

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.8e-31  Score=239.17  Aligned_cols=261  Identities=15%  Similarity=0.157  Sum_probs=211.1

Q ss_pred             cCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeE-EEEeCCCeEEEEEEeCCccceeeccccCCCCCCC
Q 016257           34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA  112 (392)
Q Consensus        34 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  112 (392)
                      ++.|++|+++        .......+.+|. .+.+++|+|++++| ++++.++.|++||+.+++....+.        +.
T Consensus        11 d~~v~v~d~~--------~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~--------~~   73 (391)
T 1l0q_A           11 SDNISVIDVT--------SNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP--------AG   73 (391)
T ss_dssp             TTEEEEEETT--------TTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--------CS
T ss_pred             CCEEEEEECC--------CCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE--------CC
Confidence            6778898876        334445566664 58999999999977 566789999999998877544432        23


Q ss_pred             CCeEEEEecCCCCEEEEE-eCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeE-EEEcCCCcEEEEECCCCeeeE
Q 016257          113 GPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWT  190 (392)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~~~~~  190 (392)
                      ..+.+++|+|++++|+++ +.++.|++||+++++....+. ++..+.+++|+|+++.+ ++++.|+.|++||+++++...
T Consensus        74 ~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  152 (391)
T 1l0q_A           74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN  152 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence            489999999999988654 467999999999988765554 45578999999999977 688889999999999999888


Q ss_pred             EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEe---CCCc
Q 016257          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS---KDGD  267 (392)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~  267 (392)
                      .+..+.  .+..++|+|+++.+    +++++.++.|++||+++++....+. +...+.+++|+|++++|++++   .++.
T Consensus       153 ~~~~~~--~~~~~~~~~dg~~l----~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~  225 (391)
T 1l0q_A          153 TVSVGR--SPKGIAVTPDGTKV----YVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNT  225 (391)
T ss_dssp             EEECCS--SEEEEEECTTSSEE----EEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred             EEecCC--CcceEEECCCCCEE----EEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCc
Confidence            876543  57999999999862    3677889999999999988776655 356789999999999999888   6899


Q ss_pred             EEEEecCCceeeeeeeccccCcceEEEEEeeCCCeE-EEEeCCCeEEEEEeecCcc
Q 016257          268 ICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV-LTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       268 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~  322 (392)
                      |++||+++++....+. .+  ..+.+++|+|++++| ++++.|+.|++|++...+.
T Consensus       226 v~~~d~~~~~~~~~~~-~~--~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~  278 (391)
T 1l0q_A          226 VSMIDTGTNKITARIP-VG--PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI  278 (391)
T ss_dssp             EEEEETTTTEEEEEEE-CC--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEEECCCCeEEEEEe-cC--CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence            9999999998877664 33  458999999999977 6778899999999876543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-34  Score=249.54  Aligned_cols=275  Identities=12%  Similarity=0.026  Sum_probs=203.8

Q ss_pred             ecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEE
Q 016257           10 GSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKL   89 (392)
Q Consensus        10 ~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~i   89 (392)
                      .++.+++   .++++|+.      |+.|++|+++..        .....+.  ...|.++.|+|+   +++++.|++|++
T Consensus        42 ~~~~~d~---~~l~sg~~------Dg~v~iwd~~~~--------~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~   99 (343)
T 3lrv_A           42 KSMYYDK---WVCMCRCE------DGALHFTQLKDS--------KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLL   99 (343)
T ss_dssp             SSSSEEE---EEEEEEEE------TTEEEEEEESSS--------SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEE
T ss_pred             hhhcCCC---CEEEEECC------CCcEEEEECCCC--------cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEE
Confidence            3444444   45666555      778999999733        2222233  467888899988   999999999999


Q ss_pred             EEEeCCccceeecccc---CCCCCCCCCeEEEEecC--CCCEEEEEeCCCcEEEEeCCCCceeecccCCC-CcEEEEEec
Q 016257           90 FEVYGGATDINLLAKK---MPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDFS  163 (392)
Q Consensus        90 w~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~  163 (392)
                      |+..............   .....|.+.|.+++|+|  ++++|++++.||+|++||+++++.......++ ..+.+++|+
T Consensus       100 w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~  179 (343)
T 3lrv_A          100 LYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLH  179 (343)
T ss_dssp             EETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEEC
T ss_pred             EEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEEC
Confidence            9865322111110000   01123567899999999  99999999999999999999988865554443 479999999


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeee-EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~  242 (392)
                      |++.+|++|+.||.|++||+++++.. ..+...|...|.+++|+|++..     +++++ ++.|++||+++.+.+..+..
T Consensus       180 pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~-----l~s~~-~~~v~iwd~~~~~~~~~~~~  253 (343)
T 3lrv_A          180 KDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYW-----MVVEC-DQTVVCFDLRKDVGTLAYPT  253 (343)
T ss_dssp             TTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSE-----EEEEE-SSBEEEEETTSSTTCBSSCC
T ss_pred             CCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCE-----EEEEe-CCeEEEEEcCCCCcceeecc
Confidence            99999999999999999999999887 7777635668999999999986     67777 44999999998876554443


Q ss_pred             ---cCCCc--EEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeeccccCcceEEEEEee---CCCeEEEEeCCCeEE
Q 016257          243 ---LRKPA--SVLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP---TQRVVLTASKEWGAM  313 (392)
Q Consensus       243 ---~~~~v--~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~  313 (392)
                         +...+  .+++|+|+|++|++++. |+.|++|++.+......      ..++..+.|.+   +.+.+++++.||.+.
T Consensus       254 ~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~d~~~~  327 (343)
T 3lrv_A          254 YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT------KDEESALCLQSDTADFTDMDVVCGDGGIA  327 (343)
T ss_dssp             CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEE------EEEEEECCC----CCCCEEEEEEETTEEE
T ss_pred             cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceE------ecCceeEecCccccccceeEEEecCCceE
Confidence               22333  46999999999999998 99999999976543221      24677888988   888999999999998


Q ss_pred             EEEee
Q 016257          314 ITKLT  318 (392)
Q Consensus       314 iw~~~  318 (392)
                      ++-..
T Consensus       328 ~~~~~  332 (343)
T 3lrv_A          328 AILKT  332 (343)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            87543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=7.7e-32  Score=244.91  Aligned_cols=335  Identities=8%  Similarity=0.009  Sum_probs=243.9

Q ss_pred             Cceeeeec---CCCCCcceeEEEeCCCCC------CCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCC
Q 016257            4 GGTVTCGS---WIKRPENVNLVVLGKSSR------ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS   74 (392)
Q Consensus         4 ~~~v~~~~---w~~~~~~~~~~~~g~~~~------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~   74 (392)
                      ...++.++   |+|+... .+++......      ....++.+.+|.++..+...    .....+..+ ..+.+++|+|+
T Consensus        60 ~~g~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~----~~~~~~~~~-~~~~~~~~s~~  133 (433)
T 3bws_A           60 NIALVEMAIPVYKDEKEI-ELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITH----RFISRFKTG-FQPKSVRFIDN  133 (433)
T ss_dssp             TEEEEEEEEECCCTTCCE-EEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSE----EEEEEEECS-SCBCCCEESSS
T ss_pred             CCccEEEEEeeccCCCcE-EEEEEccccCcceeeecccCCCceEEEEECCCCCcc----eEEEEEcCC-CCceEEEEeCC
Confidence            34567788   9998654 3333322211      12234556788887643221    222334443 45679999997


Q ss_pred             CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCC
Q 016257           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (392)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  154 (392)
                      +.++++++.++.|++||+.+++.........  ...|...+.+++|+++++++++++.|+.|++||+++++....+..+.
T Consensus       134 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~  211 (433)
T 3bws_A          134 TRLAIPLLEDEGMDVLDINSGQTVRLSPPEK--YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTG  211 (433)
T ss_dssp             SEEEEEBTTSSSEEEEETTTCCEEEECCCHH--HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS
T ss_pred             CeEEEEeCCCCeEEEEECCCCeEeeecCccc--ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCC
Confidence            7778888888999999998876543221101  11367789999999999999999999999999999988887777777


Q ss_pred             CcEEEEEecCCCCeEE-EEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeC--------CccE
Q 016257          155 KSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG--------DKAL  225 (392)
Q Consensus       155 ~~i~~i~~~~~~~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------~d~~  225 (392)
                      ..+.+++|+|+++.++ +++.|+.|++||+++++.+..+..+  ..+.+++|+|+++.     +++++        .|+.
T Consensus       212 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~-----l~~~~~~~~~~~~~dg~  284 (433)
T 3bws_A          212 KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI--GLPRGLLLSKDGKE-----LYIAQFSASNQESGGGR  284 (433)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC--SEEEEEEECTTSSE-----EEEEEEESCTTCSCCEE
T ss_pred             CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC--CCceEEEEcCCCCE-----EEEEECCCCccccCCCe
Confidence            7899999999999875 5558999999999999887777643  35899999999986     34444        5889


Q ss_pred             EEEEeCCCceeeeeecccCCCcEEEEECCCCCEE-EEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEE
Q 016257          226 LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL-AMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL  304 (392)
Q Consensus       226 i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  304 (392)
                      |++||+++++.+... .+...+.+++|+|+++.+ ++++.|+.|++||+.+++....+.  + ...+.+++|+|+|++|+
T Consensus       285 i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~-~~~~~~~~~s~dg~~l~  360 (433)
T 3bws_A          285 LGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP--V-FDKPNTIALSPDGKYLY  360 (433)
T ss_dssp             EEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE--C-SSSEEEEEECTTSSEEE
T ss_pred             EEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec--C-CCCCCeEEEcCCCCEEE
Confidence            999999988776554 345578899999999755 566889999999999998877663  4 67899999999999888


Q ss_pred             EEeC---------------CCeEEEEEeecCccccceeeeeeeeeeee--eceEEEEee-ecceeeeeccc
Q 016257          305 TASK---------------EWGAMITKLTVPADWKEWQIYSLLLALFL--ASAVVFYIF-FENSDSFWNFP  357 (392)
Q Consensus       305 ~~~~---------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~d~~i~~W~~~  357 (392)
                      +++.               ||.|++|++...+..........+.....  ....+++++ .|+.|++|++.
T Consensus       361 ~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          361 VSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             EEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            8876               57999999876544332221111222211  233555555 49999999975

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=5.1e-33  Score=252.24  Aligned_cols=261  Identities=13%  Similarity=0.130  Sum_probs=206.0

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccc--cCCceEEEeeCCCCCeeEEEEcCCCC-eEEE
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNPSGD-DFVC   80 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~~   80 (392)
                      .++|++++|+|++.  .++++|+.      ++.|.+|.+........  ........+.+|...|++++|+|++. +|++
T Consensus       128 ~~~v~~l~~~p~~~--~~lat~~~------dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  199 (430)
T 2xyi_A          128 EGEVNRARYMPQNA--CVIATKTP------SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS  199 (430)
T ss_dssp             SSCCSEEEEETTEE--EEEEEECS------SSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE
T ss_pred             CCcEEEEEECCCCC--cEEEEECC------CCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE
Confidence            46899999999743  35666555      56699999875321111  01334566889999999999999998 9999


Q ss_pred             EeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCCCcEEEEeCCCC---ceeecccCCCCc
Q 016257           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSL---RIILDEPKAHKS  156 (392)
Q Consensus        81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~  156 (392)
                      |+.||.|++|++..................|...|.+++|+| ++.+|++++.|+.|++||++++   +....+..|...
T Consensus       200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  279 (430)
T 2xyi_A          200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE  279 (430)
T ss_dssp             ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred             EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence            999999999999874322111111111124778999999999 7789999999999999999876   455555677789


Q ss_pred             EEEEEecCCCC-eEEEEcCCCcEEEEECCC-CeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC-
Q 016257          157 VLDMDFSLDSE-FLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-  233 (392)
Q Consensus       157 i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~-  233 (392)
                      |.+++|+|+++ +|++++.||.|++||+++ ..++..+..+ ...|.+++|+|++..+    +++++.|+.|++||++. 
T Consensus       280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h-~~~v~~i~~sp~~~~~----l~s~~~d~~i~iwd~~~~  354 (430)
T 2xyi_A          280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH-KDEIFQVQWSPHNETI----LASSGTDRRLHVWDLSKI  354 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC-SSCEEEEEECSSCTTE----EEEEETTSCCEEEEGGGT
T ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC-CCCEEEEEECCCCCCE----EEEEeCCCcEEEEeCCCC
Confidence            99999999887 688999999999999998 4566777655 4589999999999752    68888999999999987 


Q ss_pred             -------------ceeeeeecccCCCcEEEEECCCCC-EEEEEeCCCcEEEEecCCce
Q 016257          234 -------------WNKIGHKRLLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKKME  277 (392)
Q Consensus       234 -------------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~  277 (392)
                                   .+.+.....|...|++++|+|++. +|++++.||.|++|++....
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred             ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence                         245566677888999999999998 89999999999999997643

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2.6e-32  Score=231.17  Aligned_cols=287  Identities=13%  Similarity=0.088  Sum_probs=188.6

Q ss_pred             eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEE-eCCC
Q 016257            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TTNG   85 (392)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~-~~d~   85 (392)
                      +.++-|-..+.+...+++       ..+..+.+|..... .    .-...+++.+|+.+|..+.+.||-.-|++. -.+=
T Consensus        42 ~~~~~~~~~~~~~~~~~~-------~~~~~v~lw~~~~~-~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  109 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIIT-------ACEDVVSLWKALDA-W----QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNL  109 (356)
T ss_dssp             EEEEEEC----CEEEEEE-------EESSEEEEEEESSS-S----BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSS
T ss_pred             EeeeeeccCCCCccEEEE-------eccceEEEcccCCC-c----cceeeEEEeccCceeEEEEEcCcccceeeeeeccc
Confidence            566777776544233332       23456889988732 1    225677889999999999999965433322 1111


Q ss_pred             eE-EEEEEeCCcc----ceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe--CCCcEEEEeC-CCCceeecccCCCCcE
Q 016257           86 GC-KLFEVYGGAT----DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHW-PSLRIILDEPKAHKSV  157 (392)
Q Consensus        86 ~i-~iw~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~-~~~~~~~~~~~~~~~i  157 (392)
                      .+ .++.+.-...    ...+...     .|...+..+   ++++++.+++  .|+.|++|++ .+++.+.....|...+
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~-----g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v  181 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKS-----GNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEE  181 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEE-----EEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSS
T ss_pred             cccceEEEEECCCccccccEEEeC-----CCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCce
Confidence            11 1111110000    0000000     011123332   4555555533  4899999999 4577776677777788


Q ss_pred             EEEEecC---CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCC--cceEEEEecCCCCcceEE-------EEEEeCCccE
Q 016257          158 LDMDFSL---DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD--EKIELCRFSKDGTKPFLF-------CTVQRGDKAL  225 (392)
Q Consensus       158 ~~i~~~~---~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~-------~~~~~~~d~~  225 (392)
                      +.++|+|   ++.+|++++.|++|+|||++++++++++..++.  ..+.+++|+|++..+...       .+++++.|++
T Consensus       182 ~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t  261 (356)
T 2w18_A          182 TILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ  261 (356)
T ss_dssp             CEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE
T ss_pred             eeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE
Confidence            8889988   779999999999999999999999999976542  357788999998752211       1367889999


Q ss_pred             EEEEeCCCceeeeee-----cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCc-ceEEEEEeeC
Q 016257          226 LAVYDISTWNKIGHK-----RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT-SIALVEFCPT  299 (392)
Q Consensus       226 i~v~d~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~i~~~~~s~~  299 (392)
                      |++||..+++.+..+     .+|.....+..+  ++.++++++.|++|+|||+.+++.+..+ .+| .. .+..++|+||
T Consensus       262 IklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL-~gH-~~~vvs~vafSPD  337 (356)
T 2w18_A          262 LIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALL-PPV-SDQHWSFVKWSGT  337 (356)
T ss_dssp             EEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEE-CCC---CCCCEEEECSS
T ss_pred             EEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEe-cCC-CCCeEEEEEECCC
Confidence            999999999876544     244444433333  4789999999999999999999998887 466 44 4556999999


Q ss_pred             CCeEEEEeCCCeEEEEEe
Q 016257          300 QRVVLTASKEWGAMITKL  317 (392)
Q Consensus       300 ~~~l~~~~~dg~i~iw~~  317 (392)
                      |++|++|+.|++|+||++
T Consensus       338 G~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          338 DSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             SSEEEEECTTSCEEEEEE
T ss_pred             CCEEEEEECCCcEEEecC
Confidence            999999999999999986

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-33  Score=251.26  Aligned_cols=258  Identities=9%  Similarity=-0.056  Sum_probs=195.1

Q ss_pred             CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEe
Q 016257           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (392)
Q Consensus        61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d  140 (392)
                      +-...|.+++|+|||+++|+++.|++|+  |....+..          ..|...|.+++|+|+|       .++.+.+|+
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l----------~gh~~~v~~V~FsPdg-------~~~~~~~~~   73 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI----------NCNSKNLFHVKEFPLE-------FENKLDFEL   73 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC----------SSBGGGTEEEEEECCC-------CCCTTTTSC
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee----------cCCCccEEEEEECCCC-------CcceEEEEe
Confidence            3457899999999999999999999999  64444321          1478899999999999       456555555


Q ss_pred             CCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCC----cceEEEEecCCCCcceEEE
Q 016257          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----EKIELCRFSKDGTKPFLFC  216 (392)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~  216 (392)
                      .+.. ..... .+...|.+++|+|+|++||+++.||.|++||.+.  .+..+. ++.    ..+.+++|+|+|+.     
T Consensus        74 ~~~~-~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~-----  143 (588)
T 2j04_A           74 AQQN-GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESS-----  143 (588)
T ss_dssp             CCSS-CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSC-----
T ss_pred             CCCc-eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCE-----
Confidence            4322 22222 3466899999999999999999999999999643  555555 432    24999999999998     


Q ss_pred             EEEeCCccEEEEEeCCCcee-------eeee----cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceee---eee
Q 016257          217 TVQRGDKALLAVYDISTWNK-------IGHK----RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN---HWS  282 (392)
Q Consensus       217 ~~~~~~d~~i~v~d~~~~~~-------~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~  282 (392)
                      +++++.||+|++||+.+++.       +..+    .+|...|.+++|+|+|  +++++.|+.|++||+.+++..   ..+
T Consensus       144 LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL  221 (588)
T 2j04_A          144 IVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMI  221 (588)
T ss_dssp             EEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEE
T ss_pred             EEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeee
Confidence            89999999999999998752       3454    5667899999999999  888889999999999887742   334


Q ss_pred             eccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccc--------ceeeeeeeeeeeeeceEEEEeeecceeeee
Q 016257          283 KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWK--------EWQIYSLLLALFLASAVVFYIFFENSDSFW  354 (392)
Q Consensus       283 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W  354 (392)
                      ..+| ...|.+++|+  |+.|++++ ++.|++|++.......        ++.+.+   ........+++++.+|+ ++|
T Consensus       222 ~~~h-~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~---~~s~d~~~La~a~edG~-klw  293 (588)
T 2j04_A          222 QNAS-RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPL---NHEKESTILLMSNKTSY-KVL  293 (588)
T ss_dssp             ECCC-SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEE---TTCSSCEEEEECSSCEE-EEE
T ss_pred             cccc-cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEe---eeCCCCCEEEEEcCCCC-EEE
Confidence            3467 7899999999  68899887 6999999987544311        112211   00112235666667999 999


Q ss_pred             ccc
Q 016257          355 NFP  357 (392)
Q Consensus       355 ~~~  357 (392)
                      ...
T Consensus       294 ~~d  296 (588)
T 2j04_A          294 LED  296 (588)
T ss_dssp             ESS
T ss_pred             eec
Confidence            975

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-32  Score=266.06  Aligned_cols=248  Identities=11%  Similarity=0.122  Sum_probs=202.7

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCC--CCeEEEE
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVCS   81 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--~~~l~~~   81 (392)
                      .++|++++|+|++..   +++|+.      ++.|++|.++..      .......+.+|.+.|++++|+|+  +++|++|
T Consensus         9 ~~~V~~l~~s~dg~~---latg~~------dg~I~vwd~~~~------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~   73 (753)
T 3jro_A            9 NELIHDAVLDYYGKR---LATCSS------DKTIKIFEVEGE------THKLIDTLTGHEGPVWRVDWAHPKFGTILASC   73 (753)
T ss_dssp             CCCEEEECCCSSSCC---EEEEET------TTEEEEEEEETT------EEEEEEEECCCSSCEEEEEECCTTSCSEEEEE
T ss_pred             cceeEEEEECCCCCe---EEEEEC------CCcEEEEecCCC------CCccceeccCCcCceEEEEecCCCCCCEEEEE
Confidence            578999999999853   555444      677999998733      23455678899999999999988  9999999


Q ss_pred             eCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC--CCEEEEEeCCCcEEEEeCCCCc--eeecccCCCCcE
Q 016257           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKSV  157 (392)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i  157 (392)
                      +.||.|++||+.+++.......     ..|...|.+++|+|+  ++++++|+.||.|++||++++.  .......|...|
T Consensus        74 s~Dg~I~vwd~~~~~~~~~~~~-----~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v  148 (753)
T 3jro_A           74 SYDGKVLIWKEENGRWSQIAVH-----AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV  148 (753)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCE
T ss_pred             eCCCeEEEEECCCCcccccccc-----cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCce
Confidence            9999999999998752211111     137789999999999  9999999999999999998773  333455677799


Q ss_pred             EEEEecC-------------CCCeEEEEcCCCcEEEEECCCC----eeeEEEecCCCcceEEEEecCC---CCcceEEEE
Q 016257          158 LDMDFSL-------------DSEFLATTSTDGSARIWKTEDG----VAWTFLTRNSDEKIELCRFSKD---GTKPFLFCT  217 (392)
Q Consensus       158 ~~i~~~~-------------~~~~l~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~  217 (392)
                      .+++|+|             +++++++++.||.|++||++++    .....+..| ...|.+++|+|+   +..     +
T Consensus       149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~~~-----l  222 (753)
T 3jro_A          149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSY-----L  222 (753)
T ss_dssp             EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEE-----E
T ss_pred             EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC-CCcEEEEEeccCCCCCCE-----E
Confidence            9999999             5899999999999999999877    344445444 558999999999   665     7


Q ss_pred             EEeCCccEEEEEeCCCce-----eeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce
Q 016257          218 VQRGDKALLAVYDISTWN-----KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (392)
Q Consensus       218 ~~~~~d~~i~v~d~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  277 (392)
                      ++++.|+.|++||+++++     .......+...+++++|+|+|++|++++.||.|++||+.++.
T Consensus       223 ~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          223 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             EEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            999999999999999864     333444577899999999999999999999999999998644

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=6.8e-30  Score=228.93  Aligned_cols=268  Identities=12%  Similarity=0.076  Sum_probs=208.5

Q ss_pred             CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEE-EEEeCCCcEEEEeCCCCceeecccCCC
Q 016257           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIILDEPKAH  154 (392)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~  154 (392)
                      ..+++++.|+.|++||+.+++....+.        +...+.+++|+|+++++ ++++.|+.|++||+.+++....+..+ 
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~--------~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-   73 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIP--------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-   73 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE--------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEee--------cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-
Confidence            367788899999999998876544432        23468999999999987 56668999999999998887665544 


Q ss_pred             CcEEEEEecCCCCeEE-EEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257          155 KSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (392)
Q Consensus       155 ~~i~~i~~~~~~~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~  233 (392)
                      ..+.+++|+|++++|+ +++.++.|++||+++++.+..+..+.  .+.+++|+|+++.+    +++++.++.|++||+++
T Consensus        74 ~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l----~~~~~~~~~v~~~d~~~  147 (391)
T 1l0q_A           74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKL----YVTNNGDKTVSVINTVT  147 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEE----EEEETTTTEEEEEETTT
T ss_pred             CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEE----EEEeCCCCEEEEEECCC
Confidence            4899999999999875 45567999999999998888776443  58999999999862    36788899999999999


Q ss_pred             ceeeeeecccCCCcEEEEECCCCCEE-EEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEe---CC
Q 016257          234 WNKIGHKRLLRKPASVLSISLDGKYL-AMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS---KE  309 (392)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~d  309 (392)
                      ++.+..+..+ ..+.+++|+|+++++ ++++.++.|++||+++++....+.  + ...+.+++|+|++++|++++   .+
T Consensus       148 ~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~-~~~~~~~~~~~~g~~l~~~~~~~~~  223 (391)
T 1l0q_A          148 KAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK--V-EAAPSGIAVNPEGTKAYVTNVDKYF  223 (391)
T ss_dssp             TEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--C-SSEEEEEEECTTSSEEEEEEECSSC
T ss_pred             CcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--c-CCCccceEECCCCCEEEEEecCcCC
Confidence            8887776654 457999999999887 567788999999999998877653  3 56889999999999998888   68


Q ss_pred             CeEEEEEeecCccccceeeeeeeeeeee--eceEE-EEeeecceeeeecccccccc
Q 016257          310 WGAMITKLTVPADWKEWQIYSLLLALFL--ASAVV-FYIFFENSDSFWNFPVARNQ  362 (392)
Q Consensus       310 g~i~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~d~~i~~W~~~~~~~~  362 (392)
                      +.|++|++..............+.....  ....+ +++..|+.+++||+.+++.+
T Consensus       224 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~  279 (391)
T 1l0q_A          224 NTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTIT  279 (391)
T ss_dssp             CEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEE
Confidence            9999999986544332221111222222  22344 34467999999999887654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=2e-30  Score=232.21  Aligned_cols=233  Identities=9%  Similarity=0.091  Sum_probs=167.2

Q ss_pred             EEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC--------CCCeEEEEeCCCeEEEEEE
Q 016257           21 LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--------SGDDFVCSTTNGGCKLFEV   92 (392)
Q Consensus        21 ~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--------~~~~l~~~~~d~~i~iw~~   92 (392)
                      ++++|+.      |++|++|..+.....   .......+.+|.+.|++++|+|        |+++||+++.|++|+|||+
T Consensus       103 ~las~~~------d~~v~lw~~~~~~~~---~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~  173 (393)
T 4gq1_A          103 FLACVCQ------DNTVRLIITKNETII---TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL  173 (393)
T ss_dssp             EEEEEET------TSCEEEEEEETTEEE---EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred             EEEEEeC------CCcEEEEECCCCccc---eeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence            4555444      788999998743211   1122335789999999999998        7889999999999999999


Q ss_pred             eCCccceeeccccCCCCCCCCCeEEEEecCCC-CEEEEEeCCCcEEEEeCCCCceeecc---------------------
Q 016257           93 YGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDE---------------------  150 (392)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~---------------------  150 (392)
                      .+........       .|...+.+++|+|++ .+|++++.|++|++||+++++.....                     
T Consensus       174 ~~~~~~~~~~-------~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~  246 (393)
T 4gq1_A          174 TDEGPILAGY-------PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN  246 (393)
T ss_dssp             ETTEEEEEEE-------ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred             CCCceeeeec-------CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence            8876544443       267899999999987 47999999999999999877643221                     


Q ss_pred             ----cCCCCcEEEEEec-CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEE------------------EEecC
Q 016257          151 ----PKAHKSVLDMDFS-LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL------------------CRFSK  207 (392)
Q Consensus       151 ----~~~~~~i~~i~~~-~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~------------------~~~~~  207 (392)
                          ..+...+.++.|+ |+++.|++++.|+++++||+..++....+..+.. .+..                  ..|+|
T Consensus       247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (393)
T 4gq1_A          247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHP  325 (393)
T ss_dssp             -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred             eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEEcc
Confidence                2344578888886 7999999999999999999987766555443221 2222                  23333


Q ss_pred             CCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecC
Q 016257          208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (392)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  274 (392)
                      .....   ++++++.|+.|++||+.+++.......+..+|++++|+|||++||+++.+| +.+|.+.
T Consensus       326 ~~~~~---~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          326 RYMDY---FATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             SCTTE---EEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             CCCCE---EEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            32221   267889999999999999988888888889999999999999999999776 6677654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=5.8e-30  Score=216.83  Aligned_cols=244  Identities=11%  Similarity=0.018  Sum_probs=174.0

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe-
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-   82 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-   82 (392)
                      ..||..+.+.||..++..+++|.-.     .+.++...+.++.+.+.   . ...-.+|...|..+   ++++.+.+++ 
T Consensus        86 ~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~v~sla~spd~~~~~---~-~l~s~g~~~~v~~l---~~g~lv~ss~~  153 (356)
T 2w18_A           86 EVPVLQIVPVPDVYNLVCVALGNLE-----IREIRALFCSSDDESEK---Q-VLLKSGNIKAVLGL---TKRRLVSSSGT  153 (356)
T ss_dssp             SSCEEEECCCTTCCSCEEEEECSSS-----EEEEEEECC------CC---E-EEEEEEEEEEEEEE---TTTEEEEEESS
T ss_pred             CceeEEEEEcCcccceeeeeecccc-----ccceEEEEECCCccccc---c-EEEeCCCeEEEEec---CCCcEEEeccc
Confidence            3489999999999888888888764     23355555554422221   1 11113455556554   5666666643 


Q ss_pred             -CCCeEEEEEEeC-CccceeeccccCCCCCCCCCeEEEEecC---CCCEEEEEeCCCcEEEEeCCCCceeecccCCCC--
Q 016257           83 -TNGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSV---DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK--  155 (392)
Q Consensus        83 -~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--  155 (392)
                       .|+.|++|++.. ++......       .|...++.++|++   ++.+|++++.|++|+|||+++++.+..+..++.  
T Consensus       154 g~d~~V~~~~~s~dG~~~~s~~-------~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v  226 (356)
T 2w18_A          154 LSDQQVEVMTFAEDGGGKENQF-------LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQ  226 (356)
T ss_dssp             STTCEEEEEEECTTSCEEEEEE-------ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---
T ss_pred             CCCCcEEEEEECCCCceeeeec-------cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcce
Confidence             599999999954 44333322       2567788999999   779999999999999999999999888876543  


Q ss_pred             -cEEEEEecCCCCeE------------EEEcCCCcEEEEECCCCeeeEEEe----cCCCcceEEEEecCCCCcceEEEEE
Q 016257          156 -SVLDMDFSLDSEFL------------ATTSTDGSARIWKTEDGVAWTFLT----RNSDEKIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       156 -~i~~i~~~~~~~~l------------~~~~~d~~i~vwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~  218 (392)
                       .+.+++|+|+++++            ++|+.|++|++||..+++.+..+.    ..+...+.+..++  +..     ++
T Consensus       227 ~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~-----lA  299 (356)
T 2w18_A          227 ASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHC-----AA  299 (356)
T ss_dssp             CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTE-----EE
T ss_pred             eeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCE-----EE
Confidence             57788999999876            567889999999999998876652    1222223333332  443     68


Q ss_pred             EeCCccEEEEEeCCCceeeeeecccCCCcE-EEEECCCCCEEEEEeCCCcEEEEec
Q 016257          219 QRGDKALLAVYDISTWNKIGHKRLLRKPAS-VLSISLDGKYLAMGSKDGDICVVDV  273 (392)
Q Consensus       219 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iwd~  273 (392)
                      +++.|++|+|||+++++.+..+.+|...+. +++|+|||++|++|+.|++|+|||+
T Consensus       300 SgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          300 AILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            889999999999999999999988876554 6899999999999999999999996

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=3.4e-28  Score=225.63  Aligned_cols=318  Identities=9%  Similarity=-0.006  Sum_probs=229.4

Q ss_pred             cCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEE
Q 016257           11 SWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLF   90 (392)
Q Consensus        11 ~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw   90 (392)
                      +++|++   .+++++..      ++.|.+|+.+        .......+..+.. +..++|+|||++|++++.++.|.+|
T Consensus       144 ~~~p~~---~~~vs~~~------d~~V~v~D~~--------t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~  205 (543)
T 1nir_A          144 DLDLPN---LFSVTLRD------AGQIALVDGD--------SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMI  205 (543)
T ss_dssp             CCCGGG---EEEEEEGG------GTEEEEEETT--------TCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             ccCCCC---EEEEEEcC------CCeEEEEECC--------CceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEE
Confidence            477765   34554433      5678888654        3334455653333 8999999999999999999999999


Q ss_pred             EE--eCCccceeeccccCCCCCCCCCeEEEEecC----CCCEEEEEeC-CCcEEEEeCCCCceeecccC----------C
Q 016257           91 EV--YGGATDINLLAKKMPPLQDAGPQKCLSFSV----DGSRFAAGGV-DGHLRIMHWPSLRIILDEPK----------A  153 (392)
Q Consensus        91 ~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~----------~  153 (392)
                      |+  .+.+....+.        +...+..++|+|    ||++|++++. +++|.+||..+++.+..+..          |
T Consensus       206 D~~~~t~~~~~~i~--------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~  277 (543)
T 1nir_A          206 DLWAKEPTKVAEIK--------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH  277 (543)
T ss_dssp             ETTSSSCEEEEEEE--------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred             ECcCCCCcEEEEEe--------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccc
Confidence            99  6665443332        334679999999    9999999885 89999999999988766543          1


Q ss_pred             CC-cEEEEEecCCCCe-EEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeC
Q 016257          154 HK-SVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (392)
Q Consensus       154 ~~-~i~~i~~~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~  231 (392)
                      .. .+..+.++|++.. +++...+++|.+||..+.+.+..........+..++|+|+++++    ++++..++.|.+||.
T Consensus       278 ~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l----~va~~~~~~v~v~D~  353 (543)
T 1nir_A          278 PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYF----MTAANNSNKVAVIDS  353 (543)
T ss_dssp             SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEE----EEEEGGGTEEEEEET
T ss_pred             cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEE----EEEecCCCeEEEEEC
Confidence            22 6889999997764 56677889999999988765442221234468899999999962    355667899999999


Q ss_pred             CCceeeeeecc----cCCCcEEEEECCC-CCEEEEEe-CCCcEEEEecCC-------ceeeeeeeccccCcceEEEEEee
Q 016257          232 STWNKIGHKRL----LRKPASVLSISLD-GKYLAMGS-KDGDICVVDVKK-------MEINHWSKRLHLGTSIALVEFCP  298 (392)
Q Consensus       232 ~~~~~~~~~~~----~~~~v~~~~~s~~-~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~i~~~~~s~  298 (392)
                      ++++.+..+..    |......+ ++|+ +..++++. .|++|.+||+.+       .+.++.+ ..| ...+..++++|
T Consensus       354 ~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l-~~~-g~~~~~v~~~p  430 (543)
T 1nir_A          354 KDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL-QGQ-GGGSLFIKTHP  430 (543)
T ss_dssp             TTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE-ECS-CSCCCCEECCT
T ss_pred             CCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE-EcC-CCCceEEEcCC
Confidence            99988776654    43333333 4677 66666665 579999999998       7877777 466 67788999999


Q ss_pred             CCCeEEEEe-------CCCeEEEEEeecCccc-c----------------ceeeeeeeeeeeeeceEEEEee-----ecc
Q 016257          299 TQRVVLTAS-------KEWGAMITKLTVPADW-K----------------EWQIYSLLLALFLASAVVFYIF-----FEN  349 (392)
Q Consensus       299 ~~~~l~~~~-------~dg~i~iw~~~~~~~~-~----------------~~~~~~~~~~~~~~~~~~~~~~-----~d~  349 (392)
                      ++++|++++       .+++|.+||+...... .                +++..+.+.+     ..++.+.     .++
T Consensus       431 dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g-----~~~~~s~~~~~~~~~  505 (543)
T 1nir_A          431 KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG-----DEVWFSVWNGKNDSS  505 (543)
T ss_dssp             TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSS-----SEEEEEEECCTTSCC
T ss_pred             CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCC-----CEEEEEeecCCCCCC
Confidence            999999987       2679999999865433 1                2233333332     2333332     379


Q ss_pred             eeeeecccccccccCCC
Q 016257          350 SDSFWNFPVARNQHGGP  366 (392)
Q Consensus       350 ~i~~W~~~~~~~~~~~p  366 (392)
                      .|.+||..+++.....+
T Consensus       506 ~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          506 ALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             EEEEEETTTTEEEEEEC
T ss_pred             eEEEEECCCceEEEeec
Confidence            99999999998765444

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=2.7e-28  Score=219.75  Aligned_cols=285  Identities=14%  Similarity=0.082  Sum_probs=209.3

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCC-CCC-CcCceeEEEE--cCCCCccccCCceEEEeeCCCCCeeEEEEcC--------
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSR-ASS-SPSVLEIFSF--DPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--------   73 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~-~~~-~~~~i~i~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--------   73 (392)
                      ++....|.+.+.+  ++++|+-.. ..| .+..+++|++  ...      .......+.+|...+..+++++        
T Consensus        64 ~~~~~~w~~~g~~--~~~~g~~~~~~~G~~~~~i~lwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  135 (415)
T 2hqs_A           64 EVQPAAWSALGID--AVVVGQVTPNPDGSYNVAYQLVDTGGAPG------TVLAQNSYKVNKQWLRYAGHTASDEVFEKL  135 (415)
T ss_dssp             GCCHHHHHTTTCC--EEEEEEEEECTTSCEEEEEEEEECSSSTT------CEEEEEEEEECGGGHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHhcCCC--EEEEEEEEECCCCeEEEEEEEEeCCCCCC------CEEeeeEEEcChhHHHHHHHHHHHHHHHHH
Confidence            6777889888765  555554211 011 2337888887  422      2233456888988888888775        


Q ss_pred             ------CCCeEEEEeCC------CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC---cEEE
Q 016257           74 ------SGDDFVCSTTN------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG---HLRI  138 (392)
Q Consensus        74 ------~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~i  138 (392)
                            .+..++.++.+      +.|++||+.... ...+.       .|...+.+++|+|||++|++++.++   .|++
T Consensus       136 ~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~-------~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~  207 (415)
T 2hqs_A          136 TGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVH-------RSPQPLMSPAWSPDGSKLAYVTFESGRSALVI  207 (415)
T ss_dssp             HSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEE-------EESSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             cCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEe-------CCCCcceeeEEcCCCCEEEEEEecCCCcEEEE
Confidence                  25667666654      789999987543 23322       2567899999999999999999875   9999


Q ss_pred             EeCCCCceeecccCCCCcEEEEEecCCCCeEE-EEcCCCc--EEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (392)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (392)
                      ||+++++.. .+..+...+.+++|+|||++|+ +++.++.  |++||+++++. ..+..+ ...+.+++|+|+++.    
T Consensus       208 ~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~spdg~~----  280 (415)
T 2hqs_A          208 QTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG-RSNNTEPTWFPDSQN----  280 (415)
T ss_dssp             EETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC-SSCEEEEEECTTSSE----
T ss_pred             EECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC-CCcccceEECCCCCE----
Confidence            999988775 4556667899999999999887 6666654  99999988765 444443 457999999999997    


Q ss_pred             EEEEeC-Ccc--EEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC---CcEEEEecCCceeeeeeeccccCc
Q 016257          216 CTVQRG-DKA--LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGT  289 (392)
Q Consensus       216 ~~~~~~-~d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~  289 (392)
                       ++.++ .++  .|.+||+.+++.. .+..+...+.+++|+|+|++|++++.+   ..|++||+.+++....  ..+ . 
T Consensus       281 -l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l--~~~-~-  354 (415)
T 2hqs_A          281 -LAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL--SST-F-  354 (415)
T ss_dssp             -EEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC--CCS-S-
T ss_pred             -EEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEe--cCC-C-
Confidence             34333 344  7888899887643 444556778899999999999988864   5799999999887543  233 3 


Q ss_pred             ceEEEEEeeCCCeEEEEeCCC---eEEEEEeec
Q 016257          290 SIALVEFCPTQRVVLTASKEW---GAMITKLTV  319 (392)
Q Consensus       290 ~i~~~~~s~~~~~l~~~~~dg---~i~iw~~~~  319 (392)
                      .+.+++|+|+|++|++++.++   .|++|++..
T Consensus       355 ~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g  387 (415)
T 2hqs_A          355 LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG  387 (415)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC
Confidence            899999999999999888776   788888763

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=1.7e-26  Score=223.98  Aligned_cols=242  Identities=11%  Similarity=0.028  Sum_probs=178.6

Q ss_pred             CeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCc--cceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA--TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (392)
Q Consensus        65 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  142 (392)
                      .|.+++|||||++|++++. +.|++||+.++.  ....+       ..+...+..++|||||++|++++ ++.|++||+.
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l-------~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~  180 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL-------THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLA  180 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC-------CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETT
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc-------ccCCcccccccCCCCCCEEEEEe-CCcEEEEecC
Confidence            3889999999999999876 889999998762  11111       12456799999999999999987 5689999999


Q ss_pred             CCceeecccCCCCc----------------EEEEEecCCCCeEEEEcCCC------------------------------
Q 016257          143 SLRIILDEPKAHKS----------------VLDMDFSLDSEFLATTSTDG------------------------------  176 (392)
Q Consensus       143 ~~~~~~~~~~~~~~----------------i~~i~~~~~~~~l~~~~~d~------------------------------  176 (392)
                      +++.......+...                +..++|+|||++|++++.|+                              
T Consensus       181 ~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~  260 (741)
T 2ecf_A          181 SGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN  260 (741)
T ss_dssp             TTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred             CCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence            88765444333322                47899999999999987665                              


Q ss_pred             ---cEEEEECCC-CeeeEEEec-CCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCC----Cc
Q 016257          177 ---SARIWKTED-GVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK----PA  247 (392)
Q Consensus       177 ---~i~vwd~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~----~v  247 (392)
                         .|++||+.+ ++....... .+...+..++| |||+.+++...-....+..|.+||+.+++....+..+..    .+
T Consensus       261 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~  339 (741)
T 2ecf_A          261 VQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLH  339 (741)
T ss_dssp             CEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred             CeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcC
Confidence               788999988 765544322 24557899999 999973321111223578899999999887655554432    44


Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEecC-CceeeeeeeccccCcceEEE-EEeeCCCeEEE-EeCCC--eEEEEEeec
Q 016257          248 SVLSISLDGKYLAMGSKDGDICVVDVK-KMEINHWSKRLHLGTSIALV-EFCPTQRVVLT-ASKEW--GAMITKLTV  319 (392)
Q Consensus       248 ~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~-~~~dg--~i~iw~~~~  319 (392)
                      ..++|+|||+++++++.||.++||.+. .++ ...+ ..+ ...+..+ .|+|+|+.|+. ++.++  .+++|++..
T Consensus       340 ~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l-~~~-~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          340 NSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL-THG-NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             SCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES-CCS-SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             CceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee-eec-ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            688999999999999999988888765 334 4433 345 6678777 59999997754 44555  899999975

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=3.6e-25  Score=194.36  Aligned_cols=268  Identities=11%  Similarity=0.098  Sum_probs=187.9

Q ss_pred             CcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC-CeEEEEEEe--CCccceeeccccCCCC
Q 016257           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-GGCKLFEVY--GGATDINLLAKKMPPL  109 (392)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d-~~i~iw~~~--~~~~~~~~~~~~~~~~  109 (392)
                      .++.|.+|.++..+ ..    .. .....|...+.+++|+|++++|++++.+ +.|.+|++.  +++... .....    
T Consensus        13 ~~~~v~~~~~~~~~-~~----~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~----   81 (343)
T 1ri6_A           13 ESQQIHVWNLNHEG-AL----TL-TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-AAESA----   81 (343)
T ss_dssp             GGTEEEEEEECTTS-CE----EE-EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-EEEEE----
T ss_pred             CCCeEEEEEECCCC-cE----EE-eeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee-ccccc----
Confidence            36779999987422 11    11 2223467789999999999999988876 899999997  433211 11111    


Q ss_pred             CCCCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCC---ceeecccCCCCcEEEEEecCCCCeEEEEc-CCCcEEEEECC
Q 016257          110 QDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSL---RIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTE  184 (392)
Q Consensus       110 ~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~---~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~  184 (392)
                       ....+..++|+|++++|++++. ++.|.+||+.++   +.... ......+.+++|+|+++++++++ .++.|++||+.
T Consensus        82 -~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  159 (343)
T 1ri6_A           82 -LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV-VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVS  159 (343)
T ss_dssp             -CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE-ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             -cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccc-ccCCCCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence             1237789999999998877665 788999999432   33332 23344688999999999888776 88999999998


Q ss_pred             C-CeeeE----EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC--cee--eeeec---cc---CCCcEE
Q 016257          185 D-GVAWT----FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--WNK--IGHKR---LL---RKPASV  249 (392)
Q Consensus       185 ~-~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~--~~~--~~~~~---~~---~~~v~~  249 (392)
                      + ++...    .+.......+..++|+|+++.+    ++++..++.|.+||++.  ++.  .....   ..   ...+..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l----~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  235 (343)
T 1ri6_A          160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA----YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD  235 (343)
T ss_dssp             TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE----EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred             CCCceeeecccccccCCCCCcceEEECCCCCEE----EEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccc
Confidence            7 54432    2333334468899999999862    35566889999999953  322  11221   11   235668


Q ss_pred             EEECCCCCEEEEEe-CCCcEEEEecC--Cc--eeeeeeeccccCcceEEEEEeeCCCeEEEEe-CCCeEEEEEeecC
Q 016257          250 LSISLDGKYLAMGS-KDGDICVVDVK--KM--EINHWSKRLHLGTSIALVEFCPTQRVVLTAS-KEWGAMITKLTVP  320 (392)
Q Consensus       250 ~~~s~~~~~l~~~~-~dg~i~iwd~~--~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~  320 (392)
                      ++|+|+|++|+++. .++.|.+||+.  ++  +....+. .  ...+..++|+|+|++|++++ .++.+.+|+++..
T Consensus       236 i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~-~--~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~  309 (343)
T 1ri6_A          236 IHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP-T--ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE  309 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-C--SSSCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred             eEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec-C--CCccceEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence            99999999887554 78999999998  33  3333332 2  23488999999999888887 6899999988743

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.95  E-value=1.9e-26  Score=222.92  Aligned_cols=290  Identities=11%  Similarity=0.050  Sum_probs=199.2

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCC---CeeEEEEcCCCCeEEE
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG---DPMTIAVNPSGDDFVC   80 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~sp~~~~l~~   80 (392)
                      ..++.+++|+||++   +++. +      .++.+.+|+.+.        ......+.+|..   .|.+++|||||++|++
T Consensus        16 ~~~~~~~~~spdg~---~~~~-~------~dg~i~~~d~~~--------g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~   77 (723)
T 1xfd_A           16 KIHDPEAKWISDTE---FIYR-E------QKGTVRLWNVET--------NTSTVLIEGKKIESLRAIRYEISPDREYALF   77 (723)
T ss_dssp             CCCCCCCCBSSSSC---BCCC-C------SSSCEEEBCGGG--------CCCEEEECTTTTTTTTCSEEEECTTSSEEEE
T ss_pred             cccccccEEcCCCc---EEEE-e------CCCCEEEEECCC--------CcEEEEeccccccccccceEEECCCCCEEEE
Confidence            34578999999985   3442 2      245677776652        223344566654   4999999999999999


Q ss_pred             EeCC---------CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeccc
Q 016257           81 STTN---------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP  151 (392)
Q Consensus        81 ~~~d---------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  151 (392)
                      ++.+         +.+.+||+.+++. ..+..    ...+...+..++|||||++|++++. +.|++||+.+++......
T Consensus        78 ~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~----~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~  151 (723)
T 1xfd_A           78 SYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDP----PEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS  151 (723)
T ss_dssp             EESCCCCSSSCCCSEEEEEESSSCCC-EECCC----TTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred             EecCccceeecceeeEEEEECCCCce-EeccC----CccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec
Confidence            8764         7788999988764 22211    1123445889999999999999885 799999999887654444


Q ss_pred             CCCCcE------------------EEEEecCCCCeEEEEcCCC----------------------------------cEE
Q 016257          152 KAHKSV------------------LDMDFSLDSEFLATTSTDG----------------------------------SAR  179 (392)
Q Consensus       152 ~~~~~i------------------~~i~~~~~~~~l~~~~~d~----------------------------------~i~  179 (392)
                      .+...+                  .+++|+|||++|++++.|+                                  .|+
T Consensus       152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~  231 (723)
T 1xfd_A          152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLH  231 (723)
T ss_dssp             CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEE
T ss_pred             CCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEE
Confidence            333323                  7899999999999887543                                  799


Q ss_pred             EEECCCCeeeEEEecC-----CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc-cCCCc----EE
Q 016257          180 IWKTEDGVAWTFLTRN-----SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-LRKPA----SV  249 (392)
Q Consensus       180 vwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~v----~~  249 (392)
                      +||+.+++....+..+     +...+..++|+|||+.++ .....+..+..|.+||+.+++....... +...+    ..
T Consensus       232 ~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~-~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~  310 (723)
T 1xfd_A          232 VIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAV-TWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE  310 (723)
T ss_dssp             EEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEE-EEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred             EEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEE-EEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence            9999888765555543     145789999999998521 1111123457899999998876654433 22333    37


Q ss_pred             EEECCCCCEEEEE--eCCC------cEEEEe-cCCcee--eeeeeccccCcceEE-EEEeeCCCeEEEEeCC---CeEEE
Q 016257          250 LSISLDGKYLAMG--SKDG------DICVVD-VKKMEI--NHWSKRLHLGTSIAL-VEFCPTQRVVLTASKE---WGAMI  314 (392)
Q Consensus       250 ~~~s~~~~~l~~~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~d---g~i~i  314 (392)
                      ++|+|||+.|+..  ..++      .|.+|| ..+++.  ...+..+  ...+.. ++|+|||+.|+..+.+   +.+++
T Consensus       311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l  388 (723)
T 1xfd_A          311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKIYFLSTEDLPRRRQL  388 (723)
T ss_dssp             CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred             ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence            8999999977754  4566      577777 344441  3333222  334444 6999999998766655   78999


Q ss_pred             EEeecC
Q 016257          315 TKLTVP  320 (392)
Q Consensus       315 w~~~~~  320 (392)
                      |++...
T Consensus       389 ~~~~~~  394 (723)
T 1xfd_A          389 YSANTV  394 (723)
T ss_dssp             EEECSS
T ss_pred             EEEeCC
Confidence            998753

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=9.7e-26  Score=209.16  Aligned_cols=298  Identities=6%  Similarity=0.021  Sum_probs=215.9

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC----CCCeEEE
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP----SGDDFVC   80 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp----~~~~l~~   80 (392)
                      ..+.+++|+|++.+   +.+++.      ++.|.+|+++..      +......+. +...+..++|+|    +|++|++
T Consensus       179 ~~~~~v~~spdg~~---l~v~~~------d~~V~v~D~~~~------t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v  242 (543)
T 1nir_A          179 YAVHISRMSASGRY---LLVIGR------DARIDMIDLWAK------EPTKVAEIK-IGIEARSVESSKFKGYEDRYTIA  242 (543)
T ss_dssp             TTEEEEEECTTSCE---EEEEET------TSEEEEEETTSS------SCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEE
T ss_pred             cccceEEECCCCCE---EEEECC------CCeEEEEECcCC------CCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEE
Confidence            34789999999865   333322      467888887422      223344555 355789999999    9999998


Q ss_pred             EeC-CCeEEEEEEeCCccceeeccccCC----CCCCCCCeEEEEecCCCCE-EEEEeCCCcEEEEeCCCCceee-cccCC
Q 016257           81 STT-NGGCKLFEVYGGATDINLLAKKMP----PLQDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIIL-DEPKA  153 (392)
Q Consensus        81 ~~~-d~~i~iw~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~-~~~~~  153 (392)
                      ++. +++|.+||..+.+....+......    .......+..+.++|++.. +++...++.|.+||+.+.+.+. ....+
T Consensus       243 ~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~  322 (543)
T 1nir_A          243 GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA  322 (543)
T ss_dssp             EEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC
T ss_pred             EEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc
Confidence            884 899999999887765554321110    0112347899999997665 5566678999999998765433 12233


Q ss_pred             CCcEEEEEecCCCCeEEEE-cCCCcEEEEECCCCeeeEEEecC---CCcceEEEEecCCCCcceEEEEEEeC-CccEEEE
Q 016257          154 HKSVLDMDFSLDSEFLATT-STDGSARIWKTEDGVAWTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRG-DKALLAV  228 (392)
Q Consensus       154 ~~~i~~i~~~~~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~-~d~~i~v  228 (392)
                      ...+.++.|+|++++++++ ..+++|.+||+++++.+..+...   +......+ ++|++...    ++++. .+++|.+
T Consensus       323 ~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~----~~s~~~~d~~V~v  397 (543)
T 1nir_A          323 APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPV----WSTSHLGDGSISL  397 (543)
T ss_dssp             CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEE----EEEEBSSSSEEEE
T ss_pred             CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccE----EEeccCCCceEEE
Confidence            4467889999999977655 56889999999999998887642   22122222 47775541    35554 6899999


Q ss_pred             EeCCC-------ceeeeeecccCCCcEEEEECCCCCEEEEEe-------CCCcEEEEecCCceee-eeee-------ccc
Q 016257          229 YDIST-------WNKIGHKRLLRKPASVLSISLDGKYLAMGS-------KDGDICVVDVKKMEIN-HWSK-------RLH  286 (392)
Q Consensus       229 ~d~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~dg~i~iwd~~~~~~~-~~~~-------~~~  286 (392)
                      ||+.+       ++.++.+..+...+..++++|++++|++++       .+++|.+||+.+++.. ..+.       ..+
T Consensus       398 ~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~  477 (543)
T 1nir_A          398 IGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG  477 (543)
T ss_dssp             EECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS
T ss_pred             EEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC
Confidence            99998       888899998888888999999999999987       2679999999998866 3321       233


Q ss_pred             cCcceEEEEEeeCCCeEEEEe-----CCCeEEEEEeecCcccc
Q 016257          287 LGTSIALVEFCPTQRVVLTAS-----KEWGAMITKLTVPADWK  324 (392)
Q Consensus       287 ~~~~i~~~~~s~~~~~l~~~~-----~dg~i~iw~~~~~~~~~  324 (392)
                       ...+..+.|+|+|+.++.+.     .|+.|.|||..+.+..+
T Consensus       478 -~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~  519 (543)
T 1nir_A          478 -AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA  519 (543)
T ss_dssp             -CCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred             -CCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEE
Confidence             57899999999999888663     47999999998766543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=4.2e-25  Score=193.14  Aligned_cols=264  Identities=8%  Similarity=0.008  Sum_probs=186.3

Q ss_pred             cCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC-CCeEEEEEEeCCcc-ceeeccccCCCCCC
Q 016257           34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGAT-DINLLAKKMPPLQD  111 (392)
Q Consensus        34 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~-d~~i~iw~~~~~~~-~~~~~~~~~~~~~~  111 (392)
                      ++.|.+|+.+        .......+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ......       +
T Consensus        19 ~~~v~~~d~~--------~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-------~   82 (331)
T 3u4y_A           19 LRRISFFSTD--------TLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE-------G   82 (331)
T ss_dssp             GTEEEEEETT--------TCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE-------C
T ss_pred             CCeEEEEeCc--------ccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc-------C
Confidence            5667777765        223333444555667 9999999997776665 88999999988765 222221       2


Q ss_pred             CCCeEEEEecCCCCEEEEEeCCC---cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEE-cCCCc-EEEEECCCC
Q 016257          112 AGPQKCLSFSVDGSRFAAGGVDG---HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STDGS-ARIWKTEDG  186 (392)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~-~~d~~-i~vwd~~~~  186 (392)
                      ..+..+++|+|+|++|+++..++   .|.+||+++++.+..+.. .....+++|+|+|++++++ ..++. +.+|++...
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~  161 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD  161 (331)
T ss_dssp             SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred             CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence            33444499999999999655443   899999999887665443 3457899999999866655 45578 999998754


Q ss_pred             eeeE----EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee---eeeecccCCCcEEEEECCCCCEE
Q 016257          187 VAWT----FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLRKPASVLSISLDGKYL  259 (392)
Q Consensus       187 ~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l  259 (392)
                      ..+.    ... ........++|+|+++.+    ++++..++.|.+||+++++.   +..+.. ...+..++|+|+|+++
T Consensus       162 g~~~~~~~~~~-~~~~~~~~~~~spdg~~l----~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l  235 (331)
T 3u4y_A          162 GVLFDTGQEFI-SGGTRPFNITFTPDGNFA----FVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTV  235 (331)
T ss_dssp             CCEEEEEEEEE-CSSSSEEEEEECTTSSEE----EEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEE
T ss_pred             CcEeecCCccc-cCCCCccceEECCCCCEE----EEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEE
Confidence            3321    111 223357899999999862    45666789999999998887   555553 4567889999999987


Q ss_pred             EEEe-CCCcEEEEecCCcee--eeeeecc---c--cCcceEEEEEeeCCCeEEEEeC-CCeEEEEEeecC
Q 016257          260 AMGS-KDGDICVVDVKKMEI--NHWSKRL---H--LGTSIALVEFCPTQRVVLTASK-EWGAMITKLTVP  320 (392)
Q Consensus       260 ~~~~-~dg~i~iwd~~~~~~--~~~~~~~---~--~~~~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~  320 (392)
                      ++++ .++.|.+||+.+++.  +..+...   +  .......++|+|+|++|++++. ++.|.+|++..+
T Consensus       236 ~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          236 YVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             EEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             EEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence            7665 477899999999887  2222111   1  0122356899999998866554 679999999754

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=1.9e-26  Score=198.04  Aligned_cols=255  Identities=13%  Similarity=0.006  Sum_probs=182.9

Q ss_pred             CCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeC-CccceeeccccCCCCC
Q 016257           32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYG-GATDINLLAKKMPPLQ  110 (392)
Q Consensus        32 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~  110 (392)
                      +.++.|.+|+.+.        ... ..+..|...|.+++|+|++++|++++ ++.|++||+.+ ++......      ..
T Consensus        19 ~~~~~i~~~d~~~--------~~~-~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~------~~   82 (297)
T 2ojh_A           19 SMRSSIEIFNIRT--------RKM-RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDT------GF   82 (297)
T ss_dssp             CCCEEEEEEETTT--------TEE-EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCC------TT
T ss_pred             CcceeEEEEeCCC--------Cce-eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecc------cc
Confidence            3567777777642        222 23455788999999999999999976 77899999988 65322211      11


Q ss_pred             CCCCeEEEEecCCCCEEEEEe--CCCcEEEE--eCCCCceeecccCCCCcEEEEEecCCCCeEE-EEcCCCcEEEEECCC
Q 016257          111 DAGPQKCLSFSVDGSRFAAGG--VDGHLRIM--HWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTED  185 (392)
Q Consensus       111 ~~~~v~~~~~s~~~~~l~~~~--~dg~i~i~--d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~vwd~~~  185 (392)
                      +...+.+++|+|++++|++++  .++...+|  +..+++. ..+ .....+..++|+|++++|+ +++.++.+++|+++.
T Consensus        83 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~  160 (297)
T 2ojh_A           83 ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLM-TKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI  160 (297)
T ss_dssp             CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EEC-CSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEe-ecCCCccceEECCCCCEEEEEECCCCceEEEEEEC
Confidence            236788999999999999998  33445555  5455443 223 3334588999999999877 677889999998642


Q ss_pred             -CeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC-CceeeeeecccCCCcEEEEECCCCCEEEEEe
Q 016257          186 -GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASVLSISLDGKYLAMGS  263 (392)
Q Consensus       186 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  263 (392)
                       ......+.. +...+.+++|+|+++.+    ++++..++.+.+|+++ .+.....+..+...+..++|+|+|++|++++
T Consensus       161 ~~~~~~~~~~-~~~~~~~~~~s~dg~~l----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  235 (297)
T 2ojh_A          161 DSGVETRLTH-GEGRNDGPDYSPDGRWI----YFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVS  235 (297)
T ss_dssp             TTCCEEECCC-SSSCEEEEEECTTSSEE----EEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEE
T ss_pred             CCCcceEccc-CCCccccceECCCCCEE----EEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEE
Confidence             223333433 34478999999999862    3344567888888876 4455556666677888999999999999888


Q ss_pred             CC-----------CcEEEEecCCceeeeeee-ccccCcceEEEEEeeCCCeEEEEeCCC
Q 016257          264 KD-----------GDICVVDVKKMEINHWSK-RLHLGTSIALVEFCPTQRVVLTASKEW  310 (392)
Q Consensus       264 ~d-----------g~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg  310 (392)
                      .+           +.|++||+.+++...... ..| ...+..++|+|++++|++++.+.
T Consensus       236 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          236 YDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGG-QGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEES-TTTSCSCCBCTTSSEEEEEEECC
T ss_pred             cCCCCCcccccCceEEEEEecCCCCceeeeccCCC-CcccccceECCCCCEEEEEEecc
Confidence            65           569999999876544332 255 67899999999999988887663

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=5.6e-25  Score=198.08  Aligned_cols=237  Identities=19%  Similarity=0.176  Sum_probs=180.4

Q ss_pred             CceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCC---eEEEEEEeCCccceeeccccCCCCCC
Q 016257           35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG---GCKLFEVYGGATDINLLAKKMPPLQD  111 (392)
Q Consensus        35 ~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~  111 (392)
                      +.|.+|+++  +..       ...+.+|.+.+.+++|+|+|++|++++.++   .|++||+.+++.. .+.       .+
T Consensus       159 ~~i~i~d~~--g~~-------~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~-------~~  221 (415)
T 2hqs_A          159 YELRVSDYD--GYN-------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVA-------SF  221 (415)
T ss_dssp             EEEEEEETT--SCS-------CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEE-------CC
T ss_pred             ceEEEEcCC--CCC-------CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eee-------cC
Confidence            567777765  211       244667889999999999999999998875   8999999887643 221       24


Q ss_pred             CCCeEEEEecCCCCEEE-EEeCCCc--EEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcC-CC--cEEEEECCC
Q 016257          112 AGPQKCLSFSVDGSRFA-AGGVDGH--LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTED  185 (392)
Q Consensus       112 ~~~v~~~~~s~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~--~i~vwd~~~  185 (392)
                      ...+.+++|+|||++|+ +++.++.  |++||+++++. ..+..+...+.+++|+|||++|++++. ++  .|++||+.+
T Consensus       222 ~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~  300 (415)
T 2hqs_A          222 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING  300 (415)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC
Confidence            56899999999999888 6666654  99999988776 456666678999999999999888775 44  677789887


Q ss_pred             CeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCC---ccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEE
Q 016257          186 GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD---KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG  262 (392)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  262 (392)
                      ++. ..+..+ ...+..++|+|+++.     ++.++.   +..|.+||+.+++.. .+..+. .+.+++|+|+|++|+++
T Consensus       301 ~~~-~~l~~~-~~~~~~~~~spdG~~-----l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~  371 (415)
T 2hqs_A          301 GAP-QRITWE-GSQNQDADVSSDGKF-----MVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYS  371 (415)
T ss_dssp             SCC-EECCCS-SSEEEEEEECTTSSE-----EEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEE
T ss_pred             CCE-EEEecC-CCcccCeEECCCCCE-----EEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEE
Confidence            764 333333 347889999999997     333332   468999999987764 344443 89999999999999998


Q ss_pred             eCCC---cEEEEecCCceeeeeeeccccCcceEEEEEeeCCC
Q 016257          263 SKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (392)
Q Consensus       263 ~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  301 (392)
                      +.++   .|++||+.++.... + ..| .+.|.+++|+|...
T Consensus       372 s~~~~~~~l~~~d~~g~~~~~-l-~~~-~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          372 SSQGMGSVLNLVSTDGRFKAR-L-PAT-DGQVKFPAWSPYLH  410 (415)
T ss_dssp             EEETTEEEEEEEETTSCCEEE-C-CCS-SSEEEEEEECCCCC
T ss_pred             EcCCCccEEEEEECCCCcEEE-e-eCC-CCCCcCCccccccc
Confidence            8777   79999998655443 3 456 78999999999653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=3.9e-26  Score=221.40  Aligned_cols=286  Identities=11%  Similarity=0.077  Sum_probs=199.6

Q ss_pred             CCCeeEEEEcCCCCeEEEEeC-CC-----eEEEEEEeCCccceeeccccCC-----------------CCCCCCCeEEEE
Q 016257           63 EGDPMTIAVNPSGDDFVCSTT-NG-----GCKLFEVYGGATDINLLAKKMP-----------------PLQDAGPQKCLS  119 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~-d~-----~i~iw~~~~~~~~~~~~~~~~~-----------------~~~~~~~v~~~~  119 (392)
                      ...+.+++|+|||++|++++. |+     .|++||+.+++...........                 .......+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            457999999999999999988 88     8999999887643333221100                 000002378899


Q ss_pred             ecCCCCEEEEEeCCCcEEEEeCCCCc--eeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCC
Q 016257          120 FSVDGSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD  197 (392)
Q Consensus       120 ~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~  197 (392)
                      |||||++|++++. +.|++||+.+++  ....+..+...+..++|+|||++|++++. +.|++||+.+++.......+..
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~  193 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGST  193 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCS
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCcc
Confidence            9999999999886 999999998873  34455666678999999999999998874 6899999988876544333221


Q ss_pred             c---------------ceEEEEecCCCCcceEEEEEEeCCcc---------------------------------EEEEE
Q 016257          198 E---------------KIELCRFSKDGTKPFLFCTVQRGDKA---------------------------------LLAVY  229 (392)
Q Consensus       198 ~---------------~v~~~~~~~~~~~~~~~~~~~~~~d~---------------------------------~i~v~  229 (392)
                      .               .+..++|+|||+.     ++.++.++                                 .|.+|
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~-----l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDDSA-----IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTSSC-----EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             ceeccccceeeeeccccccceEECCCCCE-----EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            1               1477999999998     34443332                                 78999


Q ss_pred             eCCC-ceeeeeec--ccCCCcEEEEECCCCCEEEEEeC-----CCcEEEEecCCceeeeeeeccccCc---ceEEEEEee
Q 016257          230 DIST-WNKIGHKR--LLRKPASVLSISLDGKYLAMGSK-----DGDICVVDVKKMEINHWSKRLHLGT---SIALVEFCP  298 (392)
Q Consensus       230 d~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~---~i~~~~~s~  298 (392)
                      |+.+ ++......  .+...+..++| |||++|++++.     +..|++||+.+++...... .+...   .+..++|+|
T Consensus       269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~sp  346 (741)
T 2ecf_A          269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH-ETSPTWVPLHNSLRFLD  346 (741)
T ss_dssp             CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE-EECSSCCCCCSCCEECT
T ss_pred             ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE-cCCCCcCCcCCceEECC
Confidence            9988 76544332  35667899999 99999997764     5679999999988766553 23122   456899999


Q ss_pred             CCCeEEEEeCCCeEEEEEeecCccccc-----eeeeeeeeeeeeeceEEEE-eeecc--eeeeecccc
Q 016257          299 TQRVVLTASKEWGAMITKLTVPADWKE-----WQIYSLLLALFLASAVVFY-IFFEN--SDSFWNFPV  358 (392)
Q Consensus       299 ~~~~l~~~~~dg~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~d~--~i~~W~~~~  358 (392)
                      ||+++++++.||.++||.++.......     +.+. .+.........+++ +..++  .+++|++..
T Consensus       347 dg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~-~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          347 DGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVD-ELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             TSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEE-EEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             CCeEEEEecCCCccEEEEEcCCCCeeeeeecceEEE-eEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            999999999999999998874322111     1110 00011112233433 33444  899999875

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.95  E-value=3.6e-24  Score=188.53  Aligned_cols=270  Identities=12%  Similarity=0.123  Sum_probs=185.7

Q ss_pred             CcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC---CCeEEEEEEeCCccceeeccccCCCC
Q 016257           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPL  109 (392)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~  109 (392)
                      .+..+.+|.++..+..+.     ......+...+..++|+|+|+ |++++.   ++.|.+|++.+++........     
T Consensus        14 ~~~~i~v~~~d~~tg~~~-----~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~-----   82 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLT-----NDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV-----   82 (347)
T ss_dssp             SCCEEEEEEEETTTTEEE-----EEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE-----
T ss_pred             CCCCEEEEEEcCCCCeEE-----EeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee-----
Confidence            356789999997654331     122334557788999999999 665554   588999999766532111100     


Q ss_pred             CCCCCeEEEEecCCCCEEEEEe-CCCcEEEEeCCC-Cce--eecccC---------CCCcEEEEEecCCCCeEEEEcCCC
Q 016257          110 QDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPS-LRI--ILDEPK---------AHKSVLDMDFSLDSEFLATTSTDG  176 (392)
Q Consensus       110 ~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~-~~~--~~~~~~---------~~~~i~~i~~~~~~~~l~~~~~d~  176 (392)
                      .+...+..++|+|||++|++++ .++.+.+|++.. +..  +.....         ....+.+++|+|+++++++...++
T Consensus        83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~  162 (347)
T 3hfq_A           83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD  162 (347)
T ss_dssp             EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred             cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence            1345678999999999998887 678999999963 322  222111         112488999999999666667788


Q ss_pred             cEEEEECC-CCeee--EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC--cee--eeeecccC-----
Q 016257          177 SARIWKTE-DGVAW--TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--WNK--IGHKRLLR-----  244 (392)
Q Consensus       177 ~i~vwd~~-~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~--~~~--~~~~~~~~-----  244 (392)
                      .|++|++. +++..  ..+.......+..++|+|+++.+    ++++..++.+.+|+++.  ++.  +.......     
T Consensus       163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l----~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~  238 (347)
T 3hfq_A          163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYA----FLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTA  238 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEE----EEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCS
T ss_pred             EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEE----EEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCC
Confidence            99999998 44432  22233333357889999999862    35567789999999874  432  22222222     


Q ss_pred             -CCcEEEEECCCCCEEEE-EeCCCcEEEEecCCc---eeeeeeeccccCcceEEEEEeeCCCeEEEEeCC-CeEEEEEee
Q 016257          245 -KPASVLSISLDGKYLAM-GSKDGDICVVDVKKM---EINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WGAMITKLT  318 (392)
Q Consensus       245 -~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iw~~~  318 (392)
                       ..+..++|+|||++|++ ...++.|.+|++...   +....+ ..+ ...+..++|+|||++|++++.+ +.+.+|+++
T Consensus       239 ~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-~~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          239 HNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQI-STE-GDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEE-ECS-SSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEE-ecC-CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence             34788999999998754 456899999999732   333333 233 4568899999999988888764 899999886


Q ss_pred             c
Q 016257          319 V  319 (392)
Q Consensus       319 ~  319 (392)
                      .
T Consensus       317 ~  317 (347)
T 3hfq_A          317 L  317 (347)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.95  E-value=1.6e-24  Score=191.13  Aligned_cols=286  Identities=12%  Similarity=0.097  Sum_probs=203.9

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEE-eC
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TT   83 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~-~~   83 (392)
                      ..+..++|+|++.++ +++..++. ....++.|  +.++..+.      .....+.. ...+..++|+|++++++++ ..
T Consensus        41 ~~~~~~~~s~dg~~l-~~~~~~~~-~~~~~~~v--~~~d~~~~------~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~  109 (353)
T 3vgz_A           41 KGAYEMAYSQQENAL-WLATSQSR-KLDKGGVV--YRLDPVTL------EVTQAIHN-DLKPFGATINNTTQTLWFGNTV  109 (353)
T ss_dssp             SSEEEEEEETTTTEE-EEEECCCT-TTEESEEE--EEECTTTC------CEEEEEEE-SSCCCSEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCCCEE-EEEcCCCc-CCCCCccE--EEEcCCCC------eEEEEEec-CCCcceEEECCCCCEEEEEecC
Confidence            456789999998763 33322211 00113344  44554332      22223332 3458889999999966554 55


Q ss_pred             CCeEEEEEEeCCccceeeccccCCC--CCCCCCeEEEEecCCCCEEEEEe--CCCcEEEEeCCCCceeecccCCCCcEEE
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPP--LQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDEPKAHKSVLD  159 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~  159 (392)
                      ++.|.+||..+++....+.......  ......+.+++|+|+++++++++  .++.|.+||.++++....+..+...+.+
T Consensus       110 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  189 (353)
T 3vgz_A          110 NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTG  189 (353)
T ss_dssp             TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCC
T ss_pred             CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccce
Confidence            7899999998887554443211100  00111368899999999887776  4788999999998887666544456888


Q ss_pred             EEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecC---CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee
Q 016257          160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (392)
Q Consensus       160 i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~  236 (392)
                      ++|+|+++++++++.++.|.+||+.+++....+...   ....+..++|+|+++.+    .++...++.|.+||..+++.
T Consensus       190 ~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l----~~~~~~~~~v~~~d~~~~~~  265 (353)
T 3vgz_A          190 LALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRA----FITDSKAAEVLVVDTRNGNI  265 (353)
T ss_dssp             CEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEE----EEEESSSSEEEEEETTTCCE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEE----EEEeCCCCEEEEEECCCCcE
Confidence            999999999999999999999999999888777642   23357789999999963    34556679999999999888


Q ss_pred             eeeecccCCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCC
Q 016257          237 IGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW  310 (392)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  310 (392)
                      +..+....  ...++|+|+|+++++++ .++.|.+||..+++....+..   ...+.+++|+|+|++|+.+..++
T Consensus       266 ~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          266 LAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---PTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---CSEEEEEEECTTSCEEEEEEECC
T ss_pred             EEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---CCCCCeEEEcCCCCEEEEEEccc
Confidence            76665433  25699999999766665 689999999999998877643   45789999999999777766553

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=7.1e-25  Score=211.37  Aligned_cols=287  Identities=13%  Similarity=0.080  Sum_probs=200.8

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d   84 (392)
                      .+|.+++|+|| ..  +++..        ++.+.+|+++  +      ... ..+..+...+.+++|+|||+.|+++ .+
T Consensus        82 ~~v~~~~~spd-~~--~~~~~--------~~~i~~~d~~--~------~~~-~~l~~~~~~~~~~~~SpdG~~la~~-~~  140 (706)
T 2z3z_A           82 FPSFRTLDAGR-GL--VVLFT--------QGGLVGFDML--A------RKV-TYLFDTNEETASLDFSPVGDRVAYV-RN  140 (706)
T ss_dssp             CCCEEEEETTT-TE--EEEEE--------TTEEEEEETT--T------TEE-EEEECCTTCCTTCEECTTSSEEEEE-ET
T ss_pred             cCceeEEECCC-Ce--EEEEE--------CCEEEEEECC--C------Cce-EEccCCcccccCCcCCCCCCEEEEE-EC
Confidence            46999999999 44  33321        2456666654  2      111 2345567789999999999999985 67


Q ss_pred             CeEEEEEEeC-----CccceeeccccCC-------CCCCCCCeEEEEecCCCCEEEEEe---------------------
Q 016257           85 GGCKLFEVYG-----GATDINLLAKKMP-------PLQDAGPQKCLSFSVDGSRFAAGG---------------------  131 (392)
Q Consensus        85 ~~i~iw~~~~-----~~~~~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~---------------------  131 (392)
                      +.|++|++.+     ++...........       ..++...+.++.|||||++|++++                     
T Consensus       141 ~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~  220 (706)
T 2z3z_A          141 HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAES  220 (706)
T ss_dssp             TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred             CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCce
Confidence            8999999987     5532211111000       000112358999999999999987                     


Q ss_pred             ------------CCCcEEEEeCCCCceeeccc--CCCCcEEEEEecCCCCeEEEEcCCC-----cEEEEECCCCeeeEEE
Q 016257          132 ------------VDGHLRIMHWPSLRIILDEP--KAHKSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVAWTFL  192 (392)
Q Consensus       132 ------------~dg~i~i~d~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~d~-----~i~vwd~~~~~~~~~~  192 (392)
                                  .+..|++||+++++......  .+...+.+++|+|||++|++++.++     .|++||+.+++....+
T Consensus       221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~  300 (706)
T 2z3z_A          221 KPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTL  300 (706)
T ss_dssp             EEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEE
T ss_pred             EEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEE
Confidence                        34679999999887654332  3445789999999999999887765     8999999988443333


Q ss_pred             e-cCCCc---ceEEEEecC--CCCcceEEEEEEeCCccEEEEEeCC-CceeeeeecccCCCcEE-EEECCCCCEEEEEeC
Q 016257          193 T-RNSDE---KIELCRFSK--DGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASV-LSISLDGKYLAMGSK  264 (392)
Q Consensus       193 ~-~~~~~---~v~~~~~~~--~~~~~~~~~~~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~  264 (392)
                      . .....   .+..++|+|  +++.     ++++..++.+.+|+++ .++.+..+..+...+.. ++|+|+|+.|+.++.
T Consensus       301 ~~~~~~~~~~~~~~~~~sp~~dg~~-----l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~  375 (706)
T 2z3z_A          301 FVETDKHYVEPLHPLTFLPGSNNQF-----IWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFEST  375 (706)
T ss_dssp             EEEECSSCCCCCSCCEECTTCSSEE-----EEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEES
T ss_pred             EEccCCCeECccCCceeecCCCCEE-----EEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEec
Confidence            2 22221   246789999  9885     6777888888888776 55666666666777776 799999998876654


Q ss_pred             C-C----cEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC----CeEEEEEeecCc
Q 016257          265 D-G----DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE----WGAMITKLTVPA  321 (392)
Q Consensus       265 d-g----~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~iw~~~~~~  321 (392)
                      + +    .|..||+.+++... +  .+ ...+.+++|+|||++|+..+.+    +.+++|++....
T Consensus       376 ~~~~~~~~l~~~d~~~~~~~~-l--~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          376 EASPLERHFYCIDIKGGKTKD-L--TP-ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             SSCTTCBEEEEEETTCCCCEE-S--CC-SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             CCCCceEEEEEEEcCCCCcee-c--cC-CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            4 3    57777777766332 2  24 5679999999999988776443    569999987654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=3.8e-24  Score=187.35  Aligned_cols=265  Identities=12%  Similarity=-0.002  Sum_probs=191.3

Q ss_pred             cCceeEEEEcCCCCccccCCceEEEee-CCCC-CeeEEEEcCCCCeEE-EEeCCCeEEEEEEeCCccceeeccccCCCCC
Q 016257           34 PSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEG-DPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQ  110 (392)
Q Consensus        34 ~~~i~i~~~~~~~~~~~~~~~~~~~~~-~h~~-~v~~~~~sp~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  110 (392)
                      ++.|.+|+..        .......+. ++.. .+..++|+|+++.++ ++..++.|.+||+.+++....+.....  ..
T Consensus        10 ~~~v~~~d~~--------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~   79 (337)
T 1pby_B           10 PDKLVVIDTE--------KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP--EE   79 (337)
T ss_dssp             TTEEEEEETT--------TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT--TE
T ss_pred             CCeEEEEECC--------CCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc--cc
Confidence            4567777654        222233333 2222 588999999998765 455678999999988765444322110  00


Q ss_pred             CCCCeEEEEecCCCCEEEEEe------------CCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcE
Q 016257          111 DAGPQKCLSFSVDGSRFAAGG------------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSA  178 (392)
Q Consensus       111 ~~~~v~~~~~s~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i  178 (392)
                      +...+..++|+|+|++|+++.            .++.|.+||+.+++....+.. ...+.+++|+|++++|+++  ++.|
T Consensus        80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i  156 (337)
T 1pby_B           80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDL  156 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSE
T ss_pred             ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeE
Confidence            112567899999999998886            579999999998877655443 3467889999999988888  6889


Q ss_pred             EEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCcc-----------------------EEEEEeCCCce
Q 016257          179 RIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA-----------------------LLAVYDISTWN  235 (392)
Q Consensus       179 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~-----------------------~i~v~d~~~~~  235 (392)
                      ++||+++++....+..+..  ...+.|+|++..++    +.+..++                       .|.+||+++++
T Consensus       157 ~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  230 (337)
T 1pby_B          157 HVMDPEAGTLVEDKPIQSW--EAETYAQPDVLAVW----NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE  230 (337)
T ss_dssp             EEEETTTTEEEEEECSTTT--TTTTBCCCBCCCCC----CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred             EEEECCCCcEeeeeecccc--CCCceeCCCccEEe----eeccCCCceeeeeeccccccccccccccccceEEEeCCCCC
Confidence            9999999988777764431  11337899988632    2222222                       57899999887


Q ss_pred             ee-eeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEE
Q 016257          236 KI-GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI  314 (392)
Q Consensus       236 ~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  314 (392)
                      .. .....+...+..++|+|+|++++++  ++.|++||+.+++....+..   ...+.+++|+|+|++|++++.++.|++
T Consensus       231 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~i~v  305 (337)
T 1pby_B          231 MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLAA  305 (337)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEEE
T ss_pred             ceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC---CCceeeEEECCCCCEEEEEcCCCcEEE
Confidence            64 2223445577889999999999988  68999999999988776643   346789999999999999999999999


Q ss_pred             EEeecCcc
Q 016257          315 TKLTVPAD  322 (392)
Q Consensus       315 w~~~~~~~  322 (392)
                      |++...+.
T Consensus       306 ~d~~~~~~  313 (337)
T 1pby_B          306 YDAETLEK  313 (337)
T ss_dssp             EETTTCCE
T ss_pred             EECcCCcE
Confidence            99876543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=1.2e-24  Score=218.01  Aligned_cols=331  Identities=10%  Similarity=0.030  Sum_probs=222.8

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCe-------eEEEEcCCCC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDP-------MTIAVNPSGD   76 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v-------~~~~~sp~~~   76 (392)
                      .+.+.+++|+||++.+.+......     .++...||.++..+..       ...+..|...+       ..++|+|||+
T Consensus        52 ~~~v~~~~~SPDG~~la~~s~~~~-----~~~~~~i~~~d~~~g~-------~~~lt~~~~~~~~~~~~~~~~~~SpDg~  119 (1045)
T 1k32_A           52 LGVINNARFFPDGRKIAIRVMRGS-----SLNTADLYFYNGENGE-------IKRITYFSGKSTGRRMFTDVAGFDPDGN  119 (1045)
T ss_dssp             SSEEEEEEECTTSSEEEEEEEEST-----TCCEEEEEEEETTTTE-------EEECCCCCEEEETTEECSEEEEECTTCC
T ss_pred             CCcccCeEECCCCCEEEEEEeecc-----CCCCCeEEEEECCCCC-------eEEcccCCCcccccccccccccCCCCCE
Confidence            467999999999976433332110     0122345555543321       34577788888       9999999999


Q ss_pred             eEEEEeCC------CeEEEEEEeCCccceeeccc------------------------------------------cCCC
Q 016257           77 DFVCSTTN------GGCKLFEVYGGATDINLLAK------------------------------------------KMPP  108 (392)
Q Consensus        77 ~l~~~~~d------~~i~iw~~~~~~~~~~~~~~------------------------------------------~~~~  108 (392)
                      .+++++.+      ..|.+|++.+++........                                          ....
T Consensus       120 ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l  199 (1045)
T 1k32_A          120 LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI  199 (1045)
T ss_dssp             EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE
T ss_pred             EEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC
Confidence            77777644      35777776555421100000                                          0000


Q ss_pred             CCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC-CceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 016257          109 LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV  187 (392)
Q Consensus       109 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~  187 (392)
                      ..|...+.++.|+++ .++++++.++.+.+|.+.. +.....+..+ ..+...+|+|||+.|+++. ++.|++||+... 
T Consensus       200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~-~~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-  275 (1045)
T 1k32_A          200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSF-TDYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-  275 (1045)
T ss_dssp             ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCC-CSSCEEEEEESSSCEEEEE-TTEEEEECTTTC-
T ss_pred             cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCC-CCcceeeEcCCCCEEEEEe-CCEEEEecCCce-
Confidence            235677888999988 5667777889899998653 3333333333 3466779999999998874 899999999443 


Q ss_pred             eeEEEecC----------CCcceEEEEec-CCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCC-CcEEEEECCC
Q 016257          188 AWTFLTRN----------SDEKIELCRFS-KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISLD  255 (392)
Q Consensus       188 ~~~~~~~~----------~~~~v~~~~~~-~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~s~~  255 (392)
                      .+..+..+          +...+..++|+ |+|+.     ++.++ ++.+.+|+...++.. .+..+.. .+..++|+ |
T Consensus       276 ~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~-----la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-d  347 (1045)
T 1k32_A          276 KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDL-----IAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-T  347 (1045)
T ss_dssp             CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGC-----EEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-S
T ss_pred             EeeeeccCcccccccccccccccceeeecCCCCCE-----EEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-C
Confidence            33344331          12258899999 99997     34443 789999999887654 3455566 78999999 9


Q ss_pred             CCEEEEEeCCCcEE-EEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccc--------e
Q 016257          256 GKYLAMGSKDGDIC-VVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKE--------W  326 (392)
Q Consensus       256 ~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~--------~  326 (392)
                      |+.|++++.++.+. +||+.+++.....  .| ...+..++|+|||++|++++.++.|++|++..+.....        .
T Consensus       348 g~~l~~~s~~~~l~~~~d~~~~~~~~l~--~~-~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~  424 (1045)
T 1k32_A          348 KVAFIHGTREGDFLGIYDYRTGKAEKFE--EN-LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT  424 (1045)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEECC--CC-CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred             CCeEEEEECCCceEEEEECCCCCceEec--CC-ccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence            99999999888888 9999887765443  56 78899999999999999999999999999976543221        2


Q ss_pred             eeeeeeeeeeeeceEEEEeeec----------ceeeeecccccccccCCC
Q 016257          327 QIYSLLLALFLASAVVFYIFFE----------NSDSFWNFPVARNQHGGP  366 (392)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~d----------~~i~~W~~~~~~~~~~~p  366 (392)
                      .+.+++++     ..+++++.+          +.|++||+..++......
T Consensus       425 ~~~~SpDG-----~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~  469 (1045)
T 1k32_A          425 DFTISDNS-----RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT  469 (1045)
T ss_dssp             CEEECTTS-----CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC
T ss_pred             ceEECCCC-----CeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeC
Confidence            22333333     234444443          489999998876443333

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=3.3e-23  Score=182.68  Aligned_cols=242  Identities=8%  Similarity=-0.006  Sum_probs=188.7

Q ss_pred             CCCeeEEEEcCCCCeEEEEeC-------CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEE-eCCC
Q 016257           63 EGDPMTIAVNPSGDDFVCSTT-------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDG  134 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~-------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg  134 (392)
                      ...+..++|+|+++++++++.       ++.|.+||..+++....+..        ...+..++|+|+|++++++ ..++
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--------~~~~~~~~~s~dg~~l~v~~~~~~  111 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN--------DLKPFGATINNTTQTLWFGNTVNS  111 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--------SSCCCSEEEETTTTEEEEEETTTT
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--------CCCcceEEECCCCCEEEEEecCCC
Confidence            457889999999998888774       56899999988775544432        2346789999999966555 4579


Q ss_pred             cEEEEeCCCCceeecccCCCC---------cEEEEEecCCCCeEEEEc--CCCcEEEEECCCCeeeEEEecCCCcceEEE
Q 016257          135 HLRIMHWPSLRIILDEPKAHK---------SVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELC  203 (392)
Q Consensus       135 ~i~i~d~~~~~~~~~~~~~~~---------~i~~i~~~~~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~  203 (392)
                      .|.+||.++++....+..+..         .+.+++|+|+++++++++  .++.|.+||+++++....+... ...+..+
T Consensus       112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~  190 (353)
T 3vgz_A          112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT-GKMSTGL  190 (353)
T ss_dssp             EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC-CTTCCCC
T ss_pred             EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC-CCccceE
Confidence            999999999887665544332         278899999999877765  4788999999999888877633 2247889


Q ss_pred             EecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc----cCCCcEEEEECCCCCEEEEEeC-CCcEEEEecCCcee
Q 016257          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL----LRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEI  278 (392)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~  278 (392)
                      +|+|+++.     ++.+..++.|.+||..+++....+..    +...+..++|+|+++++++++. ++.|.+||..+++.
T Consensus       191 ~~s~dg~~-----l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  265 (353)
T 3vgz_A          191 ALDSEGKR-----LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI  265 (353)
T ss_dssp             EEETTTTE-----EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE
T ss_pred             EECCCCCE-----EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            99999997     56677799999999999888766554    3456788999999998777765 48999999999988


Q ss_pred             eeeeeccccCcceEEEEEeeCCCeEEEEe-CCCeEEEEEeecCcc
Q 016257          279 NHWSKRLHLGTSIALVEFCPTQRVVLTAS-KEWGAMITKLTVPAD  322 (392)
Q Consensus       279 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~  322 (392)
                      ...+....    ...++|+|+|+++++++ .++.|.+|++...+.
T Consensus       266 ~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~  306 (353)
T 3vgz_A          266 LAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV  306 (353)
T ss_dssp             EEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeE
Confidence            77764322    25699999999666555 689999999876543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=8.5e-24  Score=184.83  Aligned_cols=274  Identities=8%  Similarity=-0.035  Sum_probs=188.4

Q ss_pred             EEcCCCCe-EEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCCce-
Q 016257           70 AVNPSGDD-FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRI-  146 (392)
Q Consensus        70 ~~sp~~~~-l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~-  146 (392)
                      .|.++++. +++.+.++.|.+||..+++.......       +...+ .++|+|+++++++++. ++.|++||+++++. 
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-------~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~   75 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITL-------GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK   75 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEEC-------CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEc-------cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence            45565555 66777889999999988875444332       23455 9999999997777665 88999999998886 


Q ss_pred             eecccCCCCcEEEEEecCCCCeEEEEcCCC---cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCc
Q 016257          147 ILDEPKAHKSVLDMDFSLDSEFLATTSTDG---SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (392)
Q Consensus       147 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (392)
                      ......+..+..+++|+|++++++++..++   .|.+||+++++.+..+..+.  ....++|+|+++++    +++...+
T Consensus        76 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~spdg~~l----~~~~~~~  149 (331)
T 3u4y_A           76 VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY--DAVGIAISPNGNGL----ILIDRSS  149 (331)
T ss_dssp             EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT--TEEEEEECTTSSCE----EEEEETT
T ss_pred             EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC--CccceEECCCCCEE----EEEecCC
Confidence            544444444554599999999999655553   89999999998888776443  47899999999863    2444455


Q ss_pred             cE-EEEEeCCCceee----eeecccCCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCcee---eeeeeccccCcceEEE
Q 016257          224 AL-LAVYDISTWNKI----GHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEI---NHWSKRLHLGTSIALV  294 (392)
Q Consensus       224 ~~-i~v~d~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~---~~~~~~~~~~~~i~~~  294 (392)
                      +. |.+|++.....+    ............++|+|+|+++++++ .++.|++||+.+++.   ...+.  . ...+..+
T Consensus       150 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~-~~~~~~~  226 (331)
T 3u4y_A          150 ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--T-NNLPGTI  226 (331)
T ss_dssp             TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--C-SSCCCCE
T ss_pred             CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--C-CCCCceE
Confidence            66 999998753322    11223345678999999999766555 688999999998887   55543  2 4677899


Q ss_pred             EEeeCCCeEEEEe-CCCeEEEEEeecCccccceeeeee----e--------eeeeeeceEEEEee-ecceeeeecccccc
Q 016257          295 EFCPTQRVVLTAS-KEWGAMITKLTVPADWKEWQIYSL----L--------LALFLASAVVFYIF-FENSDSFWNFPVAR  360 (392)
Q Consensus       295 ~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~----~--------~~~~~~~~~~~~~~-~d~~i~~W~~~~~~  360 (392)
                      +|+|+|++|++++ .++.|.+|++...+..........    .        .........++.+. .++.|++|++....
T Consensus       227 ~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          227 VVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             EECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             EECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            9999999776655 578899999875443111110000    0        01111233444444 46699999998654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=6.7e-23  Score=179.82  Aligned_cols=274  Identities=13%  Similarity=0.143  Sum_probs=181.3

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ...+.+++|+|++..  +++ ++.     .++.+.+|.++..+...    .....+..+. .+..++|+|++++|++++.
T Consensus        37 ~~~~~~~~~spdg~~--l~~-~~~-----~~~~v~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~  103 (343)
T 1ri6_A           37 PGQVQPMVVSPDKRY--LYV-GVR-----PEFRVLAYRIAPDDGAL----TFAAESALPG-SLTHISTDHQGQFVFVGSY  103 (343)
T ss_dssp             SSCCCCEEECTTSSE--EEE-EET-----TTTEEEEEEECTTTCCE----EEEEEEECSS-CCSEEEECTTSSEEEEEET
T ss_pred             CCCCceEEECCCCCE--EEE-eec-----CCCeEEEEEecCCCCce----eeccccccCC-CCcEEEEcCCCCEEEEEec
Confidence            456788999999865  333 222     13679999998543322    1222344333 8899999999998877665


Q ss_pred             -CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CCCcEEEEeCCC-Cceee----cccC-CCC
Q 016257           84 -NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPS-LRIIL----DEPK-AHK  155 (392)
Q Consensus        84 -d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~-~~~~~----~~~~-~~~  155 (392)
                       ++.|.+|++..+........     ......+.+++|+|+++++++++ .++.|++||+.+ ++...    .... ...
T Consensus       104 ~~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~  178 (343)
T 1ri6_A          104 NAGNVSVTRLEDGLPVGVVDV-----VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGA  178 (343)
T ss_dssp             TTTEEEEEEEETTEEEEEEEE-----ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTC
T ss_pred             CCCeEEEEECCCCcccccccc-----ccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCC
Confidence             88899999963221111111     11334688999999999888877 889999999987 54421    1222 234


Q ss_pred             cEEEEEecCCCCeEEEE-cCCCcEEEEECCC--Cee--eEEEecCC-----CcceEEEEecCCCCcceEEEEEEeCCccE
Q 016257          156 SVLDMDFSLDSEFLATT-STDGSARIWKTED--GVA--WTFLTRNS-----DEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (392)
Q Consensus       156 ~i~~i~~~~~~~~l~~~-~~d~~i~vwd~~~--~~~--~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~d~~  225 (392)
                      .+..++|+|++++++++ ..++.|.+|+++.  ++.  ........     ...+..++|+|+++.+    +++...++.
T Consensus       179 ~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l----~v~~~~~~~  254 (343)
T 1ri6_A          179 GPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL----YACDRTASL  254 (343)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE----EEEETTTTE
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEE----EEEecCCCE
Confidence            78899999999977554 4789999999953  332  22222111     1246689999999862    346668899


Q ss_pred             EEEEeCC----CceeeeeecccCCCcEEEEECCCCCEEEEEe-CCCcEEEEec--CCceeeeeeeccccCcceEEEEEee
Q 016257          226 LAVYDIS----TWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDV--KKMEINHWSKRLHLGTSIALVEFCP  298 (392)
Q Consensus       226 i~v~d~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~~i~~~~~s~  298 (392)
                      |.+||++    ..+.+..+..+.. +..++|+|+|++|++++ .++.|.+|++  .+++...... ........+++|.+
T Consensus       255 i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~-~~~g~~p~~i~~~~  332 (343)
T 1ri6_A          255 ITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGR-YAVGQGPMWVVVNA  332 (343)
T ss_dssp             EEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEE-EECSSSCCEEEEEE
T ss_pred             EEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccc-cccCCCCeeEEEEc
Confidence            9999998    2334444444333 88999999999988887 5799999954  4665433221 11135677888887


Q ss_pred             CCC
Q 016257          299 TQR  301 (392)
Q Consensus       299 ~~~  301 (392)
                      +.+
T Consensus       333 ~~~  335 (343)
T 1ri6_A          333 HEG  335 (343)
T ss_dssp             EC-
T ss_pred             ccC
Confidence            644

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.93  E-value=2.1e-22  Score=178.18  Aligned_cols=270  Identities=12%  Similarity=0.111  Sum_probs=183.9

Q ss_pred             CcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC----CeEEEEEEeCCc-cceeeccccCC
Q 016257           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN----GGCKLFEVYGGA-TDINLLAKKMP  107 (392)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d----~~i~iw~~~~~~-~~~~~~~~~~~  107 (392)
                      .++.|.+|.++..+..+.    ....+  +...+..++|+|+|++|++++.+    +.+.+|++.... ....+....  
T Consensus        25 ~~~~i~~~~~d~~~g~~~----~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~--   96 (361)
T 3scy_A           25 NSKGIYTFRFNEETGESL----PLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQK--   96 (361)
T ss_dssp             SCCEEEEEEEETTTCCEE----EEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEE--
T ss_pred             CCCCEEEEEEeCCCCCEE----Eeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEec--
Confidence            467899999987654331    11122  67788899999999999998875    789999998742 111111111  


Q ss_pred             CCCCCCCeEEEEecCCCCEEEEEe-CCCcEEEEeCCCCceeeccc--------------CCCCcEEEEEecCCCCeEEEE
Q 016257          108 PLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEP--------------KAHKSVLDMDFSLDSEFLATT  172 (392)
Q Consensus       108 ~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~--------------~~~~~i~~i~~~~~~~~l~~~  172 (392)
                        .+......+++  ++++|++++ .++.+.+|++.....+....              .+...+.+++|+|++++++++
T Consensus        97 --~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~  172 (361)
T 3scy_A           97 --TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLAD  172 (361)
T ss_dssp             --CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEE
T ss_pred             --cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEE
Confidence              12345677777  888887776 57899999997544322111              011246889999999976655


Q ss_pred             c-CCCcEEEEECCCCee------e------EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee--e
Q 016257          173 S-TDGSARIWKTEDGVA------W------TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK--I  237 (392)
Q Consensus       173 ~-~d~~i~vwd~~~~~~------~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~--~  237 (392)
                      + .++.|.+|++.....      +      ..........+..++|+|+++.+    .++...++.|.+||+++++.  +
T Consensus       173 ~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l----~v~~~~~~~v~v~~~~~g~~~~~  248 (361)
T 3scy_A          173 DLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFA----YLINEIGGTVIAFRYADGMLDEI  248 (361)
T ss_dssp             ETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEE----EEEETTTCEEEEEEEETTEEEEE
T ss_pred             eCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEE----EEEcCCCCeEEEEEecCCceEEe
Confidence            4 578999999875431      1      22233334467899999999862    24455789999999987654  2


Q ss_pred             eee---cccCCCcEEEEECCCCCEEEEEeCC--CcEEEEecC--CceeeeeeeccccCcceEEEEEeeCCCeEEEEe-CC
Q 016257          238 GHK---RLLRKPASVLSISLDGKYLAMGSKD--GDICVVDVK--KMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS-KE  309 (392)
Q Consensus       238 ~~~---~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~iwd~~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d  309 (392)
                      ...   ..+......++|+|||++|+++..+  +.|.+|++.  +++......... ...+..++|+|+|++|++++ .+
T Consensus       249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~  327 (361)
T 3scy_A          249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDT  327 (361)
T ss_dssp             EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTT
T ss_pred             EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCC
Confidence            222   2223456799999999999777654  889999996  444322211112 45678999999999888887 67


Q ss_pred             CeEEEEEeec
Q 016257          310 WGAMITKLTV  319 (392)
Q Consensus       310 g~i~iw~~~~  319 (392)
                      +.|.+|+++.
T Consensus       328 ~~v~v~~~d~  337 (361)
T 3scy_A          328 NVIQIFERDQ  337 (361)
T ss_dssp             TEEEEEEECT
T ss_pred             CCEEEEEEEC
Confidence            9999998874

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=2.3e-24  Score=207.74  Aligned_cols=237  Identities=14%  Similarity=0.050  Sum_probs=170.3

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~  143 (392)
                      ..|.+++|+|| +.++.+ .++.+++||+.+++.... .       .+...+.+++|||||++|+++ .++.|++|++.+
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l-~-------~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~  150 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYL-F-------DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGK  150 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEE-E-------CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEc-c-------CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCc
Confidence            56999999999 666665 458999999987653221 1       134567889999999999985 689999999988


Q ss_pred             -----CceeecccCCCCc--------------EEEEEecCCCCeEEEEc-------------------------------
Q 016257          144 -----LRIILDEPKAHKS--------------VLDMDFSLDSEFLATTS-------------------------------  173 (392)
Q Consensus       144 -----~~~~~~~~~~~~~--------------i~~i~~~~~~~~l~~~~-------------------------------  173 (392)
                           ++.......+...              +.++.|+|||++|++++                               
T Consensus       151 ~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~  230 (706)
T 2z3z_A          151 LGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT  230 (706)
T ss_dssp             TTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred             ccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence                 7765444333333              48899999999999887                               


Q ss_pred             --CCCcEEEEECCCCeeeEEEec-CCCcceEEEEecCCCCcceEEEEEEeCCc-----cEEEEEeCCCceeeeeec--cc
Q 016257          174 --TDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDISTWNKIGHKR--LL  243 (392)
Q Consensus       174 --~d~~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~d-----~~i~v~d~~~~~~~~~~~--~~  243 (392)
                        .+..|++||+.+++....... .+...+..++|+||++.     ++.++.+     ..|.+||+.+++....+.  ..
T Consensus       231 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-----l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~  305 (706)
T 2z3z_A          231 PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENI-----LYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD  305 (706)
T ss_dssp             CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSE-----EEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC
T ss_pred             CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCE-----EEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC
Confidence              446799999998876544322 23456899999999997     3443333     489999999883332222  11


Q ss_pred             CC---CcEEEEECC--CCCEEEEEeCCCcEEEEecC-CceeeeeeeccccCcceEE-EEEeeCCCeEEEEeCC-C--eEE
Q 016257          244 RK---PASVLSISL--DGKYLAMGSKDGDICVVDVK-KMEINHWSKRLHLGTSIAL-VEFCPTQRVVLTASKE-W--GAM  313 (392)
Q Consensus       244 ~~---~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~d-g--~i~  313 (392)
                      ..   .+..++|+|  ||+++++++.|+.++||+++ +++....+ ..+ ...+.. ++|+|+|+.|+.++.+ +  .+.
T Consensus       306 ~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l-~~~-~~~v~~~~~~spdg~~l~~~~~~~~~~~~~  383 (706)
T 2z3z_A          306 KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV-TKG-EWEVTNFAGFDPKGTRLYFESTEASPLERH  383 (706)
T ss_dssp             SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC-CCS-SSCEEEEEEECTTSSEEEEEESSSCTTCBE
T ss_pred             CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec-CCC-CeEEEeeeEEcCCCCEEEEEecCCCCceEE
Confidence            21   246789999  99999999999999999876 55555544 344 566776 8999999987666554 3  245


Q ss_pred             EEEee
Q 016257          314 ITKLT  318 (392)
Q Consensus       314 iw~~~  318 (392)
                      ||.++
T Consensus       384 l~~~d  388 (706)
T 2z3z_A          384 FYCID  388 (706)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=2e-23  Score=209.14  Aligned_cols=278  Identities=10%  Similarity=-0.028  Sum_probs=197.9

Q ss_pred             CCCCeeEEEEc-CCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCC-CeEEEEecCCCCEEEEEeCCCcEE-E
Q 016257           62 SEGDPMTIAVN-PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAG-PQKCLSFSVDGSRFAAGGVDGHLR-I  138 (392)
Q Consensus        62 h~~~v~~~~~s-p~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~-i  138 (392)
                      |...+.+++|+ |||+.|++++ ++.+.+|++..+... .+       ..+.. .+..++|+ ||+.|++++.++.+. +
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~-------~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~  363 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KV-------PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGI  363 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-EC-------SCCSCEEEEEECSS-SEEEEEEEETTEEEEEE
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-Ec-------cCCCcceEEeeeEc-CCCeEEEEECCCceEEE
Confidence            45579999999 9999999887 778999998765422 11       12445 78999999 999999999888888 9


Q ss_pred             EeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (392)
                      |++.+++... +..+...+..++|+|||++|++++.++.|++||+.+++.......+ ...+..++|+|||++     ++
T Consensus       364 ~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~-~~~v~~~~~SpDG~~-----la  436 (1045)
T 1k32_A          364 YDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR-EAMITDFTISDNSRF-----IA  436 (1045)
T ss_dssp             EETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-SSCCCCEEECTTSCE-----EE
T ss_pred             EECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCC-CCCccceEECCCCCe-----EE
Confidence            9998776543 3455568999999999999999999999999999998877666444 447899999999997     33


Q ss_pred             EeCC----------ccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCcee-------e--
Q 016257          219 QRGD----------KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI-------N--  279 (392)
Q Consensus       219 ~~~~----------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-------~--  279 (392)
                      .++.          ++.|++||+.+++ ...+..+...+..++|+|||++|++++.++...+|+......       +  
T Consensus       437 ~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  515 (1045)
T 1k32_A          437 YGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFV  515 (1045)
T ss_dssp             EEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEE
T ss_pred             EEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEE
Confidence            3332          4699999999877 556667777888999999999999999887777776433211       0  


Q ss_pred             --------------------------------e-eeeccccCcceEEEEEeeCCCeEEE-----------EeC--CCeEE
Q 016257          280 --------------------------------H-WSKRLHLGTSIALVEFCPTQRVVLT-----------ASK--EWGAM  313 (392)
Q Consensus       280 --------------------------------~-~~~~~~~~~~i~~~~~s~~~~~l~~-----------~~~--dg~i~  313 (392)
                                                      . .....+ .+.+..++++|||+++++           .+.  ...+.
T Consensus       516 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~-~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~  594 (1045)
T 1k32_A          516 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVD-PGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLL  594 (1045)
T ss_dssp             EESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCC-CBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEE
T ss_pred             EEeCCCCCCccccCcCccccccccccccCHhHceEEcCCC-CCChhheEEcCCCeEEEEecccCcccccccccCCCceEE
Confidence                                            0 000123 567899999999987775           122  34566


Q ss_pred             EEEeecCccccceeeeeeeeeeeeeceEEEEeeecceeeeecccccc
Q 016257          314 ITKLTVPADWKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVAR  360 (392)
Q Consensus       314 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~  360 (392)
                      +||+......... ..............++++. ++.+++|++.+++
T Consensus       595 ~~d~~~~~~~~l~-~~v~~~~~S~DG~~l~~~~-~~~i~~~d~~~~~  639 (1045)
T 1k32_A          595 KYDVKTRKVTEVK-NNLTDLRLSADRKTVMVRK-DDGKIYTFPLEKP  639 (1045)
T ss_dssp             EEETTTCCEEEEE-EEEEEEEECTTSCEEEEEE-TTSCEEEEESSCT
T ss_pred             EEECCCCcEEEee-cCcceEEECCCCCEEEEEc-CCcEEEEeCccCc
Confidence            6666544322111 1111111111233444444 5589999998776

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=1.8e-23  Score=182.97  Aligned_cols=269  Identities=12%  Similarity=0.028  Sum_probs=191.7

Q ss_pred             CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCC-CeEEEEecCCCCEEE-EEeCCCcEEEEeCCCCceeecccCC
Q 016257           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAG-PQKCLSFSVDGSRFA-AGGVDGHLRIMHWPSLRIILDEPKA  153 (392)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~  153 (392)
                      ++|++++.++.|.+||+.+++....+...      +.. .+..++|+|++++++ ++..++.|.+||+.+++....+...
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~------~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~   75 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIA------DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECT------TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcC------CCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC
Confidence            47889999999999999887654443211      111 478899999998765 4556789999999998876544432


Q ss_pred             C-----CcEEEEEecCCCCeEEEEc------------CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEE
Q 016257          154 H-----KSVLDMDFSLDSEFLATTS------------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC  216 (392)
Q Consensus       154 ~-----~~i~~i~~~~~~~~l~~~~------------~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (392)
                      .     ..+..++|+|+++++++++            .++.|.+||+.+++....+...  ..+..++|+|+++.     
T Consensus        76 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~-----  148 (337)
T 1pby_B           76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWARDGSK-----  148 (337)
T ss_dssp             BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECTTSSC-----
T ss_pred             CcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--CCcceeEECCCCCE-----
Confidence            1     1567899999999988886            5799999999998887777643  35788999999997     


Q ss_pred             EEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCC------------------------cEEEEe
Q 016257          217 TVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG------------------------DICVVD  272 (392)
Q Consensus       217 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg------------------------~i~iwd  272 (392)
                      ++.+  ++.|.+||+++++....+..... ...+.|+|+++.++..+.++                        .|.+||
T Consensus       149 l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  225 (337)
T 1pby_B          149 LYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD  225 (337)
T ss_dssp             EEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred             EEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEe
Confidence            3444  57899999999887766554331 11237899998776655332                        468999


Q ss_pred             cCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeeeeeeeeeee--eceEEEEeeecce
Q 016257          273 VKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFL--ASAVVFYIFFENS  350 (392)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~  350 (392)
                      +.+++........+ ...+.+++|+|+|++++++  ++.|++|++...+..........+.....  ....+++++.++.
T Consensus       226 ~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  302 (337)
T 1pby_B          226 LETGEMAMREVRIM-DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGD  302 (337)
T ss_dssp             TTTCCEEEEEEEEC-SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSE
T ss_pred             CCCCCceEeecCCC-CCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCc
Confidence            99988753322344 5678899999999998888  78999999876543322221111222222  2335666677899


Q ss_pred             eeeeccccccccc
Q 016257          351 DSFWNFPVARNQH  363 (392)
Q Consensus       351 i~~W~~~~~~~~~  363 (392)
                      |++||+.+++.+.
T Consensus       303 i~v~d~~~~~~~~  315 (337)
T 1pby_B          303 LAAYDAETLEKKG  315 (337)
T ss_dssp             EEEEETTTCCEEE
T ss_pred             EEEEECcCCcEEE
Confidence            9999998887553

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=1.4e-23  Score=202.96  Aligned_cols=292  Identities=11%  Similarity=0.008  Sum_probs=187.8

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCC
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~   85 (392)
                      .|.+++|+||++.+.+............++.+.+|+++....      .......+|...+..++|||||+.|++++. +
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~  134 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-N  134 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC------EECCCTTCCSCCCSBCCBCSSTTCEEEEET-T
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce------EeccCCccccccccccEECCCCCEEEEEEC-C
Confidence            488999999996522221111111112246677777653321      111112345566999999999999999876 6


Q ss_pred             eEEEEEEeCCccceeeccccCCC--C---------CCCCCeEEEEecCCCCEEEEEeCCC--------------------
Q 016257           86 GCKLFEVYGGATDINLLAKKMPP--L---------QDAGPQKCLSFSVDGSRFAAGGVDG--------------------  134 (392)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~--~---------~~~~~v~~~~~s~~~~~l~~~~~dg--------------------  134 (392)
                      .|++|++.+++............  .         +..+.+.+++|||||++|++++.++                    
T Consensus       135 ~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (723)
T 1xfd_A          135 NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVK  214 (723)
T ss_dssp             EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCE
T ss_pred             eEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcce
Confidence            89999998776432221111000  0         0012347899999999999987543                    


Q ss_pred             --------------cEEEEeCCCCceeecccCC------CCcEEEEEecCCCCeEEEEcC----CCcEEEEECCCCeeeE
Q 016257          135 --------------HLRIMHWPSLRIILDEPKA------HKSVLDMDFSLDSEFLATTST----DGSARIWKTEDGVAWT  190 (392)
Q Consensus       135 --------------~i~i~d~~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~~~~~----d~~i~vwd~~~~~~~~  190 (392)
                                    .|++||+.+++....+..+      ...+..++|+|||+++++...    +..|++||+.+++...
T Consensus       215 ~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~  294 (723)
T 1xfd_A          215 PYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK  294 (723)
T ss_dssp             EEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred             eccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE
Confidence                          7999999888754444433      447899999999998876643    3579999999988776


Q ss_pred             EEecCCCcce----EEEEecCCCCcceEEEEEEeCCcc------EEEEEe-CCCcee--eeeecccCCCcEE-EEECCCC
Q 016257          191 FLTRNSDEKI----ELCRFSKDGTKPFLFCTVQRGDKA------LLAVYD-ISTWNK--IGHKRLLRKPASV-LSISLDG  256 (392)
Q Consensus       191 ~~~~~~~~~v----~~~~~~~~~~~~~~~~~~~~~~d~------~i~v~d-~~~~~~--~~~~~~~~~~v~~-~~~s~~~  256 (392)
                      .+..++...+    ..++|+|||+.++   +.++..++      .|.+|| ...++.  ...+......+.. ++|+|||
T Consensus       295 ~~~~~~~~~~~~~~~~~~~spdg~~l~---~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg  371 (723)
T 1xfd_A          295 KHEDESEAWLHRQNEEPVFSKDGRKFF---FIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKG  371 (723)
T ss_dssp             EEEEECSSCCCCCCCCCEECTTSCSEE---EEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTT
T ss_pred             EEEeccCCEEeccCCCceEcCCCCeEE---EEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCC
Confidence            6554433333    3789999999732   12244555      677788 344431  3444433444554 6999999


Q ss_pred             CEEEEEeCC---CcEEEEecCCce--eeeeeecc--ccCcceEEEEEeeCCCeEEEEeC
Q 016257          257 KYLAMGSKD---GDICVVDVKKME--INHWSKRL--HLGTSIALVEFCPTQRVVLTASK  308 (392)
Q Consensus       257 ~~l~~~~~d---g~i~iwd~~~~~--~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~  308 (392)
                      +.|+..+.+   +.+++|++....  ....+...  | ...+..++|+|||++|+....
T Consensus       372 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~spdg~~l~~~~~  429 (723)
T 1xfd_A          372 NKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVE-NCTYFSASFSHSMDFFLLKCE  429 (723)
T ss_dssp             TEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSS-SCCCCEEEECTTSSEEEEECC
T ss_pred             CEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccC-CCCeEEEEECCCCCEEEEEcc
Confidence            999876655   789999986432  22222211  4 567889999999998876543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.92  E-value=1.3e-23  Score=198.00  Aligned_cols=268  Identities=10%  Similarity=0.013  Sum_probs=190.8

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCC-CCeeEEEEcCCCCeEEEEeC
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .||++++|+||++++   ++++.     .++.++||.++        ..... .+..|. ..+..+.|+|| +.+++++.
T Consensus        22 ~~~~~~~~~~DG~~l---a~~s~-----~~g~~~lw~~~--------~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~   83 (582)
T 3o4h_A           22 VEKYSLQGVVDGDKL---LVVGF-----SEGSVNAYLYD--------GGETV-KLNREPINSVLDPHYGVG-RVILVRDV   83 (582)
T ss_dssp             SCEEEEEEEETTTEE---EEEEE-----ETTEEEEEEEE--------TTEEE-ECCSSCCSEECEECTTCS-EEEEEEEC
T ss_pred             cchheeecCCCCCeE---EEEEc-----cCCceeEEEEc--------CCCcE-eeecccccccccccCCCC-eEEEEecc
Confidence            589999999999763   33222     25668999974        22222 234444 68999999999 77777665


Q ss_pred             ---CCeEEEEEEeC--CccceeeccccCCCCCCCCCeEEEEecCCCCE-EEEEeCCCcEEEEeCCCCceeecccCCCCcE
Q 016257           84 ---NGGCKLFEVYG--GATDINLLAKKMPPLQDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIILDEPKAHKSV  157 (392)
Q Consensus        84 ---d~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i  157 (392)
                         +....+|.+..  ......+.        ....+...+|+|||+. +++.+.++.+.+||+++++..... .+..  
T Consensus        84 ~~g~~~~~l~~~~~~~~g~~~~l~--------~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~-~~~~--  152 (582)
T 3o4h_A           84 SKGAEQHALFKVNTSRPGEEQRLE--------AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA-RLPG--  152 (582)
T ss_dssp             STTSCCEEEEEEETTSTTCCEECT--------TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE-EESS--
T ss_pred             CCCCcceEEEEEeccCCCcccccc--------CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee-cCCC--
Confidence               45577887765  32222111        1223456788888864 333344555669999888754332 2222  


Q ss_pred             EEEEecCCCCeEEEEcCC----CcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCcc--EEEEEeC
Q 016257          158 LDMDFSLDSEFLATTSTD----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDI  231 (392)
Q Consensus       158 ~~i~~~~~~~~l~~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~--~i~v~d~  231 (392)
                      .+++|+|||++|++++.+    +.|++||+.+++.. .+..+ ...+..++|+|||+.     ++++..++  .|++||+
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~-~~~~~~~~~SpDG~~-----l~~~~~~~~~~i~~~d~  225 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSG-EGSFSSASISPGMKV-----TAGLETAREARLVTVDP  225 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCS-SCEEEEEEECTTSCE-----EEEEECSSCEEEEEECT
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecC-CCccccceECCCCCE-----EEEccCCCeeEEEEEcC
Confidence            789999999999988776    78999999887764 44443 446899999999997     45666777  8999999


Q ss_pred             CCceeeeeecccCCCcEEEE--------ECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeE
Q 016257          232 STWNKIGHKRLLRKPASVLS--------ISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV  303 (392)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  303 (392)
                      .+++.. .+..+...+..++        |+|||.++++++.|+.+++|++  ++...    .. .+.+.+++|+ +++++
T Consensus       226 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~----~~-~~~v~~~~~s-dg~~l  296 (582)
T 3o4h_A          226 RDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE----AP-QGNHGRVVLW-RGKLV  296 (582)
T ss_dssp             TTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC----CC-SSEEEEEEEE-TTEEE
T ss_pred             CCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec----cC-CCceEEEEec-CCEEE
Confidence            988877 6666666666666        9999999999999999999999  66544    22 5678999999 99998


Q ss_pred             EEEeCCCe---EEEEEe
Q 016257          304 LTASKEWG---AMITKL  317 (392)
Q Consensus       304 ~~~~~dg~---i~iw~~  317 (392)
                      ++++.+..   +.+|+.
T Consensus       297 ~~~s~~~~p~~l~~~d~  313 (582)
T 3o4h_A          297 TSHTSLSTPPRIVSLPS  313 (582)
T ss_dssp             EEEEETTEEEEEEEETT
T ss_pred             EEEcCCCCCCeEEEEcC
Confidence            88887744   444443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.92  E-value=2.7e-23  Score=195.82  Aligned_cols=231  Identities=13%  Similarity=0.038  Sum_probs=170.0

Q ss_pred             CCCeeEEEEcCCCCeEEEEeC-CCeEEEEEEeCCccceeeccccCCCCCCC-CCeEEEEecCCCCEEEEEeC---CCcEE
Q 016257           63 EGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDA-GPQKCLSFSVDGSRFAAGGV---DGHLR  137 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~---dg~i~  137 (392)
                      ..+|++++|+|||+.||+++. ||++.||++.+++. ..+.       .+. ..+..++|+|| +.+++++.   +...+
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt-------~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~   91 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLN-------REPINSVLDPHYGVG-RVILVRDVSKGAEQHA   91 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECC-------SSCCSEECEECTTCS-EEEEEEECSTTSCCEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-Eeee-------cccccccccccCCCC-eEEEEeccCCCCcceE
Confidence            457999999999999998876 99999999866543 2211       133 57899999999 77777764   45556


Q ss_pred             EEeCCC---CceeecccCCCCcEEEEEecCCCCe-EEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcce
Q 016257          138 IMHWPS---LRIILDEPKAHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (392)
Q Consensus       138 i~d~~~---~~~~~~~~~~~~~i~~i~~~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (392)
                      +|.+..   +... .+... ..+...+|+|+++. +++++.++.+.+||+.+++.......+ .   .+++|+|||+.  
T Consensus        92 l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~---~~~~~spDG~~--  163 (582)
T 3o4h_A           92 LFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G---FGFVSDIRGDL--  163 (582)
T ss_dssp             EEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S---CEEEEEEETTE--
T ss_pred             EEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C---ceEEECCCCCE--
Confidence            655432   2222 23222 23446688888864 333344455669999988765544332 2   78999999997  


Q ss_pred             EEEEEEeCCc----cEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCC--cEEEEecCCceeeeeeecccc
Q 016257          214 LFCTVQRGDK----ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG--DICVVDVKKMEINHWSKRLHL  287 (392)
Q Consensus       214 ~~~~~~~~~d----~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~  287 (392)
                         ++.++.+    ..|++||+.+++.. .+..+...+..++|||||+.|+++..++  .|++||+.+++.. .+ ..| 
T Consensus       164 ---la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~-~~~-  236 (582)
T 3o4h_A          164 ---IAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL-ELP-  236 (582)
T ss_dssp             ---EEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC-CCS-
T ss_pred             ---EEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec-cCC-
Confidence               4444444    78999999987764 5666777889999999999999888888  8999999998876 33 455 


Q ss_pred             CcceEEEE--------EeeCCCeEEEEeCCCeEEEEEe
Q 016257          288 GTSIALVE--------FCPTQRVVLTASKEWGAMITKL  317 (392)
Q Consensus       288 ~~~i~~~~--------~s~~~~~l~~~~~dg~i~iw~~  317 (392)
                      ...+..++        |+|||.++++++.|+.+++|++
T Consensus       237 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          237 SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            55666666        9999998999999999999998

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=9e-23  Score=179.51  Aligned_cols=233  Identities=11%  Similarity=0.031  Sum_probs=175.1

Q ss_pred             EEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEE-EeCCCcEEEEeCCCCce
Q 016257           68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSLRI  146 (392)
Q Consensus        68 ~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~  146 (392)
                      .++++++++++++++.++.|++||+.+++....+...      ....+..++|+|+++++++ ...++.|.+||+++++.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~------~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~   77 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP------DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN   77 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS------SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecC------CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE
Confidence            3567888889999999999999999887654443221      1124688999999987654 45689999999998887


Q ss_pred             eecccCCC------CcEEEEEecCCCCeEEEEcCC------------CcEEEEECCCCee---eEEEecCCCcceEEEEe
Q 016257          147 ILDEPKAH------KSVLDMDFSLDSEFLATTSTD------------GSARIWKTEDGVA---WTFLTRNSDEKIELCRF  205 (392)
Q Consensus       147 ~~~~~~~~------~~i~~i~~~~~~~~l~~~~~d------------~~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~  205 (392)
                      ...+....      ..+..++|+|+|+++++++.+            +.|.+||+.+++.   +..+..+  ..+.+++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~  155 (349)
T 1jmx_B           78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP--RQVYLMRA  155 (349)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC--SSCCCEEE
T ss_pred             EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC--CcccceeE
Confidence            65544322      237889999999999988865            8999999987443   3333332  25889999


Q ss_pred             cCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC-----------------------------------------
Q 016257          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----------------------------------------  244 (392)
Q Consensus       206 ~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~-----------------------------------------  244 (392)
                      +|+++ +     +.++.  .|.+||+++++.+..+....                                         
T Consensus       156 s~dg~-l-----~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  227 (349)
T 1jmx_B          156 ADDGS-L-----YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA  227 (349)
T ss_dssp             CTTSC-E-----EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------C
T ss_pred             CCCCc-E-----EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcc
Confidence            99998 2     22333  39999998877655443221                                         


Q ss_pred             ---------------------------CCcEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEE
Q 016257          245 ---------------------------KPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF  296 (392)
Q Consensus       245 ---------------------------~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  296 (392)
                                                 ..+..++|+| ++++++++  ++.|.+||+.+++....+..   ...+.+++|
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~  302 (349)
T 1jmx_B          228 TADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL---DHTYYCVAF  302 (349)
T ss_dssp             CCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC---SSCCCEEEE
T ss_pred             ccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC---CCCccceEE
Confidence                                       1345677889 99999988  78999999999998776643   345789999


Q ss_pred             eeCCCeEEEEeCCCeEEEEEeecCc
Q 016257          297 CPTQRVVLTASKEWGAMITKLTVPA  321 (392)
Q Consensus       297 s~~~~~l~~~~~dg~i~iw~~~~~~  321 (392)
                      +|+|++|++++.++.|++|++...+
T Consensus       303 s~dg~~l~~~~~~~~v~v~d~~~~~  327 (349)
T 1jmx_B          303 DKKGDKLYLGGTFNDLAVFNPDTLE  327 (349)
T ss_dssp             CSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             CCCCCEEEEecCCCeEEEEeccccc
Confidence            9999999888889999999987554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.91  E-value=1.5e-22  Score=195.49  Aligned_cols=279  Identities=13%  Similarity=0.110  Sum_probs=189.6

Q ss_pred             eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCC---CeeEEEEcCCCCeEEEEeC
Q 016257            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG---DPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~sp~~~~l~~~~~   83 (392)
                      -.+++|+|++   .+++.+       .++.|.+|+.+.        ......+.+|..   .+.+++|||||++|++++.
T Consensus        18 ~~~~~~s~dg---~~~~~~-------~d~~i~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~   79 (719)
T 1z68_A           18 TFFPNWISGQ---EYLHQS-------ADNNIVLYNIET--------GQSYTILSNRTMKSVNASNYGLSPDRQFVYLESD   79 (719)
T ss_dssp             CCCCEESSSS---EEEEEC-------TTSCEEEEESSS--------CCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEE
T ss_pred             CCccEECCCC---eEEEEc-------CCCCEEEEEcCC--------CcEEEEEccccccccceeeEEECCCCCeEEEEec
Confidence            3478999998   355533       245677777652        233334444433   4899999999999998876


Q ss_pred             ---------CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCC
Q 016257           84 ---------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (392)
Q Consensus        84 ---------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  154 (392)
                               ++.|++||+.+++.....   .     ....+..++|||||+.|+++. ++.|++|++.+++........+
T Consensus        80 ~~~~~~~s~~~~i~~~d~~~g~~~~~~---~-----l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~  150 (719)
T 1z68_A           80 YSKLWRYSYTATYYIYDLSNGEFVRGN---E-----LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGR  150 (719)
T ss_dssp             EEECSSSCEEEEEEEEETTTTEECCSS---C-----CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCB
T ss_pred             CceeEEeecceEEEEEECCCCccccce---e-----cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCC
Confidence                     689999999887641100   0     124578899999999999986 7899999998887654332222


Q ss_pred             -CcE-----------------EEEEecCCCCeEEEEcCCC----------------------------------cEEEEE
Q 016257          155 -KSV-----------------LDMDFSLDSEFLATTSTDG----------------------------------SARIWK  182 (392)
Q Consensus       155 -~~i-----------------~~i~~~~~~~~l~~~~~d~----------------------------------~i~vwd  182 (392)
                       ..+                 .+++|+|||++|++++.|.                                  .|++||
T Consensus       151 ~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d  230 (719)
T 1z68_A          151 ENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID  230 (719)
T ss_dssp             TTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred             cCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence             122                 4899999999999887552                                  788999


Q ss_pred             CCCCeee--EEEe-----cCCCcceEEEEecCCCCcceEEEEEEeC--CccEEEEEe----CCCceeeeee----cccCC
Q 016257          183 TEDGVAW--TFLT-----RNSDEKIELCRFSKDGTKPFLFCTVQRG--DKALLAVYD----ISTWNKIGHK----RLLRK  245 (392)
Q Consensus       183 ~~~~~~~--~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~d~~i~v~d----~~~~~~~~~~----~~~~~  245 (392)
                      +.+++..  ..+.     ..+...+..++|+||++.  ++ .....  ....|.+||    ..+++.....    ..+..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~--~~-~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~  307 (719)
T 1z68_A          231 TTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERV--CL-QWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTG  307 (719)
T ss_dssp             SSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEE--EE-EEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSS
T ss_pred             CCCCCccceeEccCCccCCCCcceEEEeEEeCCCeE--EE-EEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCc
Confidence            9887653  1221     124457899999999653  11 11122  235688999    8877766554    35555


Q ss_pred             CcE-----EEEECCCCCEEEE--EeCCC--cEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC-----Ce
Q 016257          246 PAS-----VLSISLDGKYLAM--GSKDG--DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-----WG  311 (392)
Q Consensus       246 ~v~-----~~~~s~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~  311 (392)
                      .+.     .+.|+|||+.++.  ...+|  .|.+||+.+++... + ..+ ...+..+.++ +++.|+..+.+     +.
T Consensus       308 ~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~-l-t~~-~~~v~~~~~~-d~~~i~~~~~~~~~~~~~  383 (719)
T 1z68_A          308 WAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQ-I-TSG-KWEAINIFRV-TQDSLFYSSNEFEEYPGR  383 (719)
T ss_dssp             CSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEE-C-SCS-SSCEEEEEEE-CSSEEEEEESCGGGCTTC
T ss_pred             eEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEe-c-ccC-ceEEEEEEEE-eCCEEEEEEecCCCCCce
Confidence            665     7899999986554  44455  47777887766333 2 233 5567888877 88877766654     88


Q ss_pred             EEEEEeec
Q 016257          312 AMITKLTV  319 (392)
Q Consensus       312 i~iw~~~~  319 (392)
                      .++|.+..
T Consensus       384 ~~l~~~~~  391 (719)
T 1z68_A          384 RNIYRISI  391 (719)
T ss_dssp             BEEEEEEC
T ss_pred             EEEEEEeC
Confidence            99999875

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=2e-22  Score=172.78  Aligned_cols=223  Identities=13%  Similarity=0.098  Sum_probs=164.7

Q ss_pred             EeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC-CceeecccCCC-CcEE
Q 016257           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-LRIILDEPKAH-KSVL  158 (392)
Q Consensus        81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~-~~i~  158 (392)
                      ++.++.|++||+.+++... +.       .|...+.+++|+|++++|++++ ++.|++||+.+ ++.......+. ..+.
T Consensus        18 ~~~~~~i~~~d~~~~~~~~-~~-------~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~   88 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRV-VW-------QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNN   88 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEE-EE-------EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCS
T ss_pred             CCcceeEEEEeCCCCceee-ec-------cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccccccc
Confidence            4578899999998776432 21       2467899999999999999987 78999999998 77665554443 5788


Q ss_pred             EEEecCCCCeEEEEc--CCCcEEEEEC--CCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC-
Q 016257          159 DMDFSLDSEFLATTS--TDGSARIWKT--EDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-  233 (392)
Q Consensus       159 ~i~~~~~~~~l~~~~--~d~~i~vwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~-  233 (392)
                      +++|+|++++|++++  .++...+|.+  .+++ ...+..+  ..+..++|+|+++.+    ++++..++.+.+|+++. 
T Consensus        89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~--~~~~~~~~spdg~~l----~~~~~~~~~~~l~~~~~~  161 (297)
T 2ojh_A           89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN--LPSYWHGWSPDGKSF----TYCGIRDQVFDIYSMDID  161 (297)
T ss_dssp             CCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS--SSEEEEEECTTSSEE----EEEEEETTEEEEEEEETT
T ss_pred             ceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC--CCccceEECCCCCEE----EEEECCCCceEEEEEECC
Confidence            999999999999988  3345555554  4443 3344333  248899999999962    33666788888888542 


Q ss_pred             ceeeeeecccCCCcEEEEECCCCCEEEEEe-CCCcEEEEecC-CceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC--
Q 016257          234 WNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVK-KMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE--  309 (392)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--  309 (392)
                      ......+..+...+.+++|+|++++|++++ .++.+++|++. .+.....+ ..+ ...+..++|+|+|++|++++.+  
T Consensus       162 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~-~~~-~~~~~~~~~s~dg~~l~~~~~~~~  239 (297)
T 2ojh_A          162 SGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI-TDS-AYGDWFPHPSPSGDKVVFVSYDAD  239 (297)
T ss_dssp             TCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC-CCC-SEEEEEEEECTTSSEEEEEEEETT
T ss_pred             CCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE-ecC-CcccCCeEECCCCCEEEEEEcCCC
Confidence            233345556677899999999999888776 58899999886 34333333 345 6789999999999999888766  


Q ss_pred             ---------CeEEEEEeecCc
Q 016257          310 ---------WGAMITKLTVPA  321 (392)
Q Consensus       310 ---------g~i~iw~~~~~~  321 (392)
                               +.|++|++....
T Consensus       240 ~~~~~~~~~~~l~~~d~~~~~  260 (297)
T 2ojh_A          240 VFDHPRDLDVRVQLMDMDGGN  260 (297)
T ss_dssp             CCSCCSSEEEEEEEEETTSCS
T ss_pred             CCcccccCceEEEEEecCCCC
Confidence                     568899887543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=4.3e-21  Score=168.85  Aligned_cols=258  Identities=11%  Similarity=0.079  Sum_probs=170.7

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe-CC
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TN   84 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~d   84 (392)
                      ....++|+|++.   +++.+..    +.++.|.+|.++...      ......+..+...+..++|+|+|++|++++ .+
T Consensus        41 ~p~~~a~spdg~---l~~~~~~----~~~~~v~~~~~~~g~------~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~  107 (347)
T 3hfq_A           41 NPTYLALSAKDC---LYSVDKE----DDEGGIAAWQIDGQT------AHKLNTVVAPGTPPAYVAVDEARQLVYSANYHK  107 (347)
T ss_dssp             CCCCEEECTTCE---EEEEEEE----TTEEEEEEEEEETTE------EEEEEEEEEESCCCSEEEEETTTTEEEEEETTT
T ss_pred             CcceEEEccCCe---EEEEEec----CCCceEEEEEecCCc------EEEeeeeecCCCCCEEEEECCCCCEEEEEeCCC
Confidence            456688999874   3332211    124668888885321      112233445678899999999999998887 67


Q ss_pred             CeEEEEEEeCCccceeeccccCC-----CCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC-CCceee--cccC-CCC
Q 016257           85 GGCKLFEVYGGATDINLLAKKMP-----PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP-SLRIIL--DEPK-AHK  155 (392)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~~~--~~~~-~~~  155 (392)
                      +.+.+|++...............     .......+.+++|+|+|+++++...++.|++|++. +++...  .... ...
T Consensus       108 ~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~  187 (347)
T 3hfq_A          108 GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGF  187 (347)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTC
T ss_pred             CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCC
Confidence            89999999643222111111100     00123458899999999966666678899999998 454321  1112 223


Q ss_pred             cEEEEEecCCCCeEEE-EcCCCcEEEEECCC--Cee--eEEEecCCC-----cceEEEEecCCCCcceEEEEEEeCCccE
Q 016257          156 SVLDMDFSLDSEFLAT-TSTDGSARIWKTED--GVA--WTFLTRNSD-----EKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (392)
Q Consensus       156 ~i~~i~~~~~~~~l~~-~~~d~~i~vwd~~~--~~~--~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~d~~  225 (392)
                      .+..++|+|||+++++ ...++.|.+|+++.  ++.  ...+.....     ..+..++|+|+|+++    .++...++.
T Consensus       188 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l----~v~~~~~~~  263 (347)
T 3hfq_A          188 GPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFL----YVSNRGYNT  263 (347)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEE----EEEEETTTE
T ss_pred             CCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEE----EEEeCCCCE
Confidence            6788999999996665 56778999999874  443  222222211     358889999999962    245566899


Q ss_pred             EEEEeCCC---ceeeeeecccCCCcEEEEECCCCCEEEEEeCC-CcEEEE--ecCCceeee
Q 016257          226 LAVYDIST---WNKIGHKRLLRKPASVLSISLDGKYLAMGSKD-GDICVV--DVKKMEINH  280 (392)
Q Consensus       226 i~v~d~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iw--d~~~~~~~~  280 (392)
                      |.+||+..   .+.+..+..+...+..++|+|||++|++++.+ +.|.+|  |.+++++..
T Consensus       264 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          264 LAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             EEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence            99999973   24444455555678899999999999888764 889999  555666554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=9.9e-23  Score=184.04  Aligned_cols=206  Identities=12%  Similarity=0.063  Sum_probs=153.5

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccc-------eeec-cccCCCCCCCCCeEEEEecCCCCEEE----EE
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD-------INLL-AKKMPPLQDAGPQKCLSFSVDGSRFA----AG  130 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~-------~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~----~~  130 (392)
                      ...++.+++++++.++++++.++ +++|+.......       .... ......+.+...|.+++|+|++++|+    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            34688999999999999999888 899876432110       0000 00001123456899999999999999    78


Q ss_pred             eCCCcEEEEeCCCC--------ce---eecccCCCCcEEEEEecCC-CCeEEEEcCCCcEEEEECCCCeeeEEEecCCCc
Q 016257          131 GVDGHLRIMHWPSL--------RI---ILDEPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE  198 (392)
Q Consensus       131 ~~dg~i~i~d~~~~--------~~---~~~~~~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  198 (392)
                      +.|+.|++||++++        +.   .....+|...|.+++|+|+ +.+|++++.||+|++||++++........ +..
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~-~~~  193 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP-STV  193 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC-GGG
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC-CCC
Confidence            88999999998654        11   2334456679999999997 78999999999999999998866555544 345


Q ss_pred             ceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeeccc-------CCCcEEEEECCCCCEEEEE-eCCCc---
Q 016257          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-------RKPASVLSISLDGKYLAMG-SKDGD---  267 (392)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~-~~dg~---  267 (392)
                      .+.+++|+|++..     +++++.|+.|++||.+ ++....+..+       ...+.+++|++++.++++. +.||.   
T Consensus       194 ~v~~v~wspdg~~-----lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~  267 (434)
T 2oit_A          194 AVTSVCWSPKGKQ-----LAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLET  267 (434)
T ss_dssp             CEEEEEECTTSSC-----EEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSS
T ss_pred             ceeEEEEcCCCCE-----EEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCC
Confidence            7999999999998     7899999999999998 4444433322       2378999999988877553 34433   


Q ss_pred             ---EEEEecCCc
Q 016257          268 ---ICVVDVKKM  276 (392)
Q Consensus       268 ---i~iwd~~~~  276 (392)
                         +++|++++.
T Consensus       268 ~~~v~i~~l~~~  279 (434)
T 2oit_A          268 SPDVVMALLPKK  279 (434)
T ss_dssp             CCEEEEEECCCT
T ss_pred             CCceEEEEeccC
Confidence               899999864

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.91  E-value=2.7e-21  Score=171.32  Aligned_cols=270  Identities=9%  Similarity=0.038  Sum_probs=181.4

Q ss_pred             CceeEEEEcCCCCccccCCceEEEe-eCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEe-CCccceeeccccCCCCCCC
Q 016257           35 SVLEIFSFDPKTTSVYTSPLVTYVF-DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY-GGATDINLLAKKMPPLQDA  112 (392)
Q Consensus        35 ~~i~i~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~-~~~~~~~~~~~~~~~~~~~  112 (392)
                      +.|.+|.++..+..+..    .... .++...+..++|+|+|++|++++.+ .|.+|++. +++..... ...     ..
T Consensus        14 ~~i~~~~~d~~~g~l~~----~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~-~~~-----~~   82 (365)
T 1jof_A           14 GAIFTVQFDDEKLTCKL----IKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA-SHP-----IG   82 (365)
T ss_dssp             CEEEEEEEETTTTEEEE----EEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE-EEE-----CC
T ss_pred             CcEEEEEEECCCCCEEE----eeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEee-Eee-----cC
Confidence            35888888765543311    1111 1234578899999999999998888 89999997 65432211 111     01


Q ss_pred             CCeEEEEecCCCCE--EEEEe-------------CCCcEEEEeCC-CCceeeccc----CCCCcEEEEEecCCCCeEEEE
Q 016257          113 GPQKCLSFSVDGSR--FAAGG-------------VDGHLRIMHWP-SLRIILDEP----KAHKSVLDMDFSLDSEFLATT  172 (392)
Q Consensus       113 ~~v~~~~~s~~~~~--l~~~~-------------~dg~i~i~d~~-~~~~~~~~~----~~~~~i~~i~~~~~~~~l~~~  172 (392)
                      +.+..++|+|||++  ++++.             .++.+.+|++. +++......    .+...+.+++|+|||++++++
T Consensus        83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~  162 (365)
T 1jof_A           83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence            23556899999994  44543             68999999997 455432222    233578999999999988876


Q ss_pred             c-CCCcEEEEECC-CCeee--EEEecC-CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC--Cceee---eeecc
Q 016257          173 S-TDGSARIWKTE-DGVAW--TFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWNKI---GHKRL  242 (392)
Q Consensus       173 ~-~d~~i~vwd~~-~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~--~~~~~---~~~~~  242 (392)
                      . .++.|++||+. +++..  ..+... +...+..++|+|+++.+    .++...++.|.+|+++  +++..   ..+..
T Consensus       163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l----~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~  238 (365)
T 1jof_A          163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYL----YALMEAGNRICEYVIDPATHMPVYTHHSFPL  238 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEE----EEEETTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred             cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEE----EEEECCCCeEEEEEEeCCCCcEEEccceEEc
Confidence            5 36789999998 66543  233322 23468999999999862    2344457899999765  44432   11111


Q ss_pred             -------cCC------CcEEEE-ECCCCCEEEEEeCCC------cEEEEecC-Cceeeeee--eccccCcceEEEEEee-
Q 016257          243 -------LRK------PASVLS-ISLDGKYLAMGSKDG------DICVVDVK-KMEINHWS--KRLHLGTSIALVEFCP-  298 (392)
Q Consensus       243 -------~~~------~v~~~~-~s~~~~~l~~~~~dg------~i~iwd~~-~~~~~~~~--~~~~~~~~i~~~~~s~-  298 (392)
                             +..      .+..++ |+|||++|++++.+.      .|.+|++. +++.....  ...+ ...+..++|+| 
T Consensus       239 ~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~-~~~~~~~a~sp~  317 (365)
T 1jof_A          239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP-TSGGHSNAVSPC  317 (365)
T ss_dssp             SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS-SCCTTCCCEEEC
T ss_pred             CCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC-CCCcccceecCC
Confidence                   111      478899 999999988776432      79999996 56644321  1223 44567899999 


Q ss_pred             --CCCeEEEEeCC-CeEEEEEeecC
Q 016257          299 --TQRVVLTASKE-WGAMITKLTVP  320 (392)
Q Consensus       299 --~~~~l~~~~~d-g~i~iw~~~~~  320 (392)
                        ||++|++++.+ +.|++|++...
T Consensus       318 ~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          318 PWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CcCCCEEEEEEcCCCeEEEEEEchh
Confidence              89999998864 89999999854

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=1.6e-20  Score=166.09  Aligned_cols=275  Identities=13%  Similarity=0.148  Sum_probs=179.4

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe-CC
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TN   84 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~d   84 (392)
                      ....++|+|++..  +++.+..   ...++.+.+|.++..+..+    ........+...+..+++  ++++|++++ .+
T Consensus        51 ~p~~l~~spdg~~--l~~~~~~---~~~~~~v~~~~~~~~~g~~----~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~  119 (361)
T 3scy_A           51 NPSYLIPSADGKF--VYSVNEF---SKDQAAVSAFAFDKEKGTL----HLLNTQKTMGADPCYLTT--NGKNIVTANYSG  119 (361)
T ss_dssp             CCCSEEECTTSSE--EEEEECC---SSTTCEEEEEEEETTTTEE----EEEEEEECSSSCEEEEEE--CSSEEEEEETTT
T ss_pred             CCceEEECCCCCE--EEEEEcc---CCCCCcEEEEEEeCCCCcE----EEeeEeccCCCCcEEEEE--CCCEEEEEECCC
Confidence            4566899999854  2222221   1124679999998654322    122233445567788888  888777776 57


Q ss_pred             CeEEEEEEeCCccceeeccc-------cCCCCCCCCCeEEEEecCCCCEEEEEe-CCCcEEEEeCCCCce----------
Q 016257           85 GGCKLFEVYGGATDINLLAK-------KMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRI----------  146 (392)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~----------  146 (392)
                      +.+.+|++............       .....++...+.+++|+|+|++|++++ .++.|++|++.....          
T Consensus       120 ~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~  199 (361)
T 3scy_A          120 GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK  199 (361)
T ss_dssp             TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE
T ss_pred             CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec
Confidence            89999999754432221110       000112234568899999999776655 478999998875431          


Q ss_pred             ---eecccCCCCcEEEEEecCCCCeEEEEc-CCCcEEEEECCCCee--eEEEecC--CCcceEEEEecCCCCcceEEEEE
Q 016257          147 ---ILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVA--WTFLTRN--SDEKIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       147 ---~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~~~--~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~  218 (392)
                         .............++|+|+|+++++++ .++.|.+|++++++.  +..+...  .......++|+|+++++    .+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l----~v  275 (361)
T 3scy_A          200 GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYL----YA  275 (361)
T ss_dssp             EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEE----EE
T ss_pred             ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEE----EE
Confidence               111223344678999999999887766 689999999987654  2223221  12346799999999972    24


Q ss_pred             EeCC-ccEEEEEeCC--Cce--eeeeecccCCCcEEEEECCCCCEEEEEe-CCCcEEEE--ecCCceeeeeeeccccCcc
Q 016257          219 QRGD-KALLAVYDIS--TWN--KIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVV--DVKKMEINHWSKRLHLGTS  290 (392)
Q Consensus       219 ~~~~-d~~i~v~d~~--~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~  290 (392)
                      +... ++.|.+|++.  +++  .+..+.. ...+..++|+|+|++|++++ .++.|.+|  |..+++........+ ...
T Consensus       276 ~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-~~~  353 (361)
T 3scy_A          276 SNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIK-VDK  353 (361)
T ss_dssp             EECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEE-CSS
T ss_pred             ECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeee-CCC
Confidence            4444 6899999986  333  3333333 55778999999999998887 56889996  555777665443334 567


Q ss_pred             eEEEEEe
Q 016257          291 IALVEFC  297 (392)
Q Consensus       291 i~~~~~s  297 (392)
                      +.|+.|.
T Consensus       354 p~~v~~~  360 (361)
T 3scy_A          354 PVCLKFV  360 (361)
T ss_dssp             EEEEEEE
T ss_pred             CeEEEEc
Confidence            8899886

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.90  E-value=3.9e-22  Score=178.21  Aligned_cols=286  Identities=10%  Similarity=0.028  Sum_probs=185.3

Q ss_pred             ecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEE
Q 016257           10 GSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKL   89 (392)
Q Consensus        10 ~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~i   89 (392)
                      .+|+||++++.+..   .     .++..++|.++..+..      ......++...+..+.|+|||+.|++++.++.+++
T Consensus        41 ~~~SpDg~~l~~~~---~-----~~g~~~l~~~d~~~g~------~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~  106 (388)
T 3pe7_A           41 KCFTRDGSKLLFGG---A-----FDGPWNYYLLDLNTQV------ATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMR  106 (388)
T ss_dssp             CCBCTTSCEEEEEE---C-----TTSSCEEEEEETTTCE------EEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEE
T ss_pred             ccCCCCCCEEEEEE---c-----CCCCceEEEEeCCCCc------eEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEE
Confidence            78999997633332   2     1334567777755432      23334556666667889999999999999999999


Q ss_pred             EEEeCCccceeeccccCCCCCCCCCeEEE--EecCCCCEEEEEe----------------------CCCcEEEEeCCCCc
Q 016257           90 FEVYGGATDINLLAKKMPPLQDAGPQKCL--SFSVDGSRFAAGG----------------------VDGHLRIMHWPSLR  145 (392)
Q Consensus        90 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~~~----------------------~dg~i~i~d~~~~~  145 (392)
                      ||+.+++.......       +...+...  .+++++++++...                      .+..|++||+.+++
T Consensus       107 ~d~~~g~~~~~~~~-------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~  179 (388)
T 3pe7_A          107 VDLATLEENVVYQV-------PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE  179 (388)
T ss_dssp             EETTTCCEEEEEEC-------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred             EECCCCcceeeeec-------hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence            99988764332211       12233333  3489999887432                      34679999999886


Q ss_pred             eeecccCCCCcEEEEEecC-CCCeEEEEcCC------CcEEEEECCCCeeeEEEecCCC-cceEEEEecCCCCcceEEEE
Q 016257          146 IILDEPKAHKSVLDMDFSL-DSEFLATTSTD------GSARIWKTEDGVAWTFLTRNSD-EKIELCRFSKDGTKPFLFCT  217 (392)
Q Consensus       146 ~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~  217 (392)
                      .. .+..+...+..+.|+| ||+.|+.+..+      ..|.++|+..++. ..+..+.. ..+..++|+|||+.+++...
T Consensus       180 ~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~  257 (388)
T 3pe7_A          180 ST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSY  257 (388)
T ss_dssp             EE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred             eE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEec
Confidence            54 3444555789999999 99988877653      3788888765443 34433332 35788999999997422111


Q ss_pred             EEeCCccEEEEEeCCCceeeeeecccC-----CCcEEEEECCCCCEEEEE---------eCCCcEEEEecCCceeeeeee
Q 016257          218 VQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMG---------SKDGDICVVDVKKMEINHWSK  283 (392)
Q Consensus       218 ~~~~~d~~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~~  283 (392)
                      -.+..+..|++||+.+++.........     .....+.|+|||+.|+..         ..+..|++||+.+++..... 
T Consensus       258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~-  336 (388)
T 3pe7_A          258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVA-  336 (388)
T ss_dssp             ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEE-
T ss_pred             CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEec-
Confidence            111123359999999886432211111     001123799999988754         44568999999998765443 


Q ss_pred             ccccCc-----------ceEEEEEeeCCCeEEEEe-CCCeEEEEEeecCc
Q 016257          284 RLHLGT-----------SIALVEFCPTQRVVLTAS-KEWGAMITKLTVPA  321 (392)
Q Consensus       284 ~~~~~~-----------~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~  321 (392)
                       .+ ..           .+..++|+|||+.|+..+ .+|...||.++...
T Consensus       337 -~~-~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~  384 (388)
T 3pe7_A          337 -RH-DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE  384 (388)
T ss_dssp             -EC-CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred             -cc-cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence             22 23           478899999999877665 57888888887554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=3e-22  Score=193.40  Aligned_cols=276  Identities=11%  Similarity=0.035  Sum_probs=182.2

Q ss_pred             eEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC---------CCcEE
Q 016257           67 MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---------DGHLR  137 (392)
Q Consensus        67 ~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~  137 (392)
                      ..++|+|+|+++++ +.|+.|++||+.+++....+.....    ....+.+++|||||++|++++.         ++.|+
T Consensus        19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~   93 (719)
T 1z68_A           19 FFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTM----KSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY   93 (719)
T ss_dssp             CCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHH----HTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             CccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccc----cccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence            37899999965554 5799999999988875433321110    0124789999999999998876         68999


Q ss_pred             EEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcc-----------------e
Q 016257          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK-----------------I  200 (392)
Q Consensus       138 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-----------------v  200 (392)
                      +||+++++.+... .....+..++|||||+.|+++. ++.|++||+.+++........+...                 .
T Consensus        94 ~~d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~  171 (719)
T 1z68_A           94 IYDLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK  171 (719)
T ss_dssp             EEETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred             EEECCCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence            9999988762111 1124688899999999999886 6899999998887654332222111                 2


Q ss_pred             EEEEecCCCCcceEEEEEEeCCc----------------------------------cEEEEEeCCCceee--------e
Q 016257          201 ELCRFSKDGTKPFLFCTVQRGDK----------------------------------ALLAVYDISTWNKI--------G  238 (392)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~d----------------------------------~~i~v~d~~~~~~~--------~  238 (392)
                      .+++|+|||+.     ++.++.|                                  ..|.+||+.+++..        .
T Consensus       172 ~~~~wSPDG~~-----la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~  246 (719)
T 1z68_A          172 YALWWSPNGKF-----LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA  246 (719)
T ss_dssp             CCEEECTTSSE-----EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH
T ss_pred             ccEEECCCCCE-----EEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc
Confidence            48999999997     3333322                                  28899999987642        1


Q ss_pred             eecccCCCcEEEEECCCCCEEEEEeCC----CcEEEEe----cCCceeeeeee---ccccCcceE-----EEEEeeCCCe
Q 016257          239 HKRLLRKPASVLSISLDGKYLAMGSKD----GDICVVD----VKKMEINHWSK---RLHLGTSIA-----LVEFCPTQRV  302 (392)
Q Consensus       239 ~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~~---~~~~~~~i~-----~~~~s~~~~~  302 (392)
                      .+..+...+..++||||++++++....    ..|.+||    +.+++......   ..| ...+.     .+.|+|||+.
T Consensus       247 ~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~  325 (719)
T 1z68_A          247 MIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR-TGWAGGFFVSTPVFSYDAIS  325 (719)
T ss_dssp             HHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS-SSCSSSSSCCCCEECTTSSC
T ss_pred             cCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC-CceEccccCCccEECCCCCe
Confidence            123466678999999998877775433    2488899    88887665552   355 55565     8899999996


Q ss_pred             EEE--EeCCCeEEEE--EeecCcccc----ceeeeeeeeeeeeeceEEEEeeec-----ceeeeecccc
Q 016257          303 VLT--ASKEWGAMIT--KLTVPADWK----EWQIYSLLLALFLASAVVFYIFFE-----NSDSFWNFPV  358 (392)
Q Consensus       303 l~~--~~~dg~i~iw--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~~W~~~~  358 (392)
                      |+.  ...+|...||  ++.......    .+.+. .+. .. ....+++.+.+     +..++|.+..
T Consensus       326 l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~-~~~-~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          326 YYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAI-NIF-RV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             EEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEE-EEE-EE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             EEEEEEccCCceEEEEEECCCCceEecccCceEEE-EEE-EE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            554  5566655555  443332111    11111 111 11 34445555443     7799999875

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=2.6e-22  Score=181.29  Aligned_cols=200  Identities=15%  Similarity=0.129  Sum_probs=151.3

Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC----------ceeec-----ccCCCCcEEEEEecCCCCeEE----EEc
Q 016257          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL----------RIILD-----EPKAHKSVLDMDFSLDSEFLA----TTS  173 (392)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~-----~~~~~~~i~~i~~~~~~~~l~----~~~  173 (392)
                      ..++.+++++++.++++++.++ +++|+....          .....     ...+...|.+++|+|++++|+    +++
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence            3578899999999999999888 888875311          00100     112334699999999999999    788


Q ss_pred             CCCcEEEEECCCC--------eeeEEE--ecCCCcceEEEEecCC-CCcceEEEEEEeCCccEEEEEeCCCceeeeeecc
Q 016257          174 TDGSARIWKTEDG--------VAWTFL--TRNSDEKIELCRFSKD-GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (392)
Q Consensus       174 ~d~~i~vwd~~~~--------~~~~~~--~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~  242 (392)
                      .|+.|++||++++        +.+..+  ...|...|.+++|+|+ +..     +++++.|+.|++||++++........
T Consensus       116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~-----las~s~Dg~v~iwD~~~~~~~~~~~~  190 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSM-----VAVCLADGSIAVLQVTETVKVCATLP  190 (434)
T ss_dssp             TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTE-----EEEEETTSCEEEEEESSSEEEEEEEC
T ss_pred             CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCE-----EEEEECCCeEEEEEcCCCcceeeccC
Confidence            8999999998764        222222  2234568999999998 554     78899999999999999877666667


Q ss_pred             cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec------cccCcceEEEEEeeCCCeEEE-EeCCC-----
Q 016257          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR------LHLGTSIALVEFCPTQRVVLT-ASKEW-----  310 (392)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~i~~~~~s~~~~~l~~-~~~dg-----  310 (392)
                      |...+++++|+|+|++|++|+.||.|++||++ ++....+..      .| ...|.+++|++++.++++ .+.||     
T Consensus       191 ~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~-~~~v~~v~w~~~~~~l~~~~~~dg~~~~~  268 (434)
T 2oit_A          191 STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDH-PVRVLDVLWIGTYVFAIVYAAADGTLETS  268 (434)
T ss_dssp             GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTS-CEEEEEEEEEETTEEEEEEEETTCCSSSC
T ss_pred             CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCC-ceeEEEEEEecCceEEEEEccCCCccCCC
Confidence            78899999999999999999999999999998 443333211      12 348999999999887755 33443     


Q ss_pred             -eEEEEEeecC
Q 016257          311 -GAMITKLTVP  320 (392)
Q Consensus       311 -~i~iw~~~~~  320 (392)
                       .+++|++...
T Consensus       269 ~~v~i~~l~~~  279 (434)
T 2oit_A          269 PDVVMALLPKK  279 (434)
T ss_dssp             CEEEEEECCCT
T ss_pred             CceEEEEeccC
Confidence             3899999855

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.88  E-value=1.2e-20  Score=165.96  Aligned_cols=246  Identities=15%  Similarity=0.058  Sum_probs=169.4

Q ss_pred             eecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCC-CCeeEEEEcCCCCeEE-EEeCCCe
Q 016257            9 CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFV-CSTTNGG   86 (392)
Q Consensus         9 ~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~l~-~~~~d~~   86 (392)
                      .+++++++   .++++++.      ++.|.+|+.+        .......+..+. ..+..++|+|++++++ ++..++.
T Consensus         4 g~~~~~~~---~~~v~~~~------~~~v~~~d~~--------~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~   66 (349)
T 1jmx_B            4 GPALKAGH---EYMIVTNY------PNNLHVVDVA--------SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD   66 (349)
T ss_dssp             CCCCCTTC---EEEEEEET------TTEEEEEETT--------TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTE
T ss_pred             cccccCCC---EEEEEeCC------CCeEEEEECC--------CCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCc
Confidence            46777765   34444333      4567777654        222333344332 2688999999998665 4456889


Q ss_pred             EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC------------CcEEEEeCCCCceeec--ccC
Q 016257           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------------GHLRIMHWPSLRIILD--EPK  152 (392)
Q Consensus        87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~--~~~  152 (392)
                      |.+||+.+++....+...... ......+..++|+|+|++|++++.+            +.|.+||+++++....  ...
T Consensus        67 i~~~d~~t~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  145 (349)
T 1jmx_B           67 IYGIDLDTCKNTFHANLSSVP-GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP  145 (349)
T ss_dssp             EEEEETTTTEEEEEEESCCST-TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE
T ss_pred             EEEEeCCCCcEEEEEEccccc-ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc
Confidence            999999877654433211100 0002236889999999999998865            8999999987543221  122


Q ss_pred             CCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCC------------------------------------
Q 016257          153 AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS------------------------------------  196 (392)
Q Consensus       153 ~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~------------------------------------  196 (392)
                      +...+.+++|+|+++ +++++  +.|++||+.+++....+..+.                                    
T Consensus       146 ~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  222 (349)
T 1jmx_B          146 MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD  222 (349)
T ss_dssp             CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred             CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCC
Confidence            334688899999999 66554  349999999888776654321                                    


Q ss_pred             -------------------------------CcceEEEEecC-CCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC
Q 016257          197 -------------------------------DEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR  244 (392)
Q Consensus       197 -------------------------------~~~v~~~~~~~-~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~  244 (392)
                                                     ...+..++|+| +++.     ++++  ++.|.+||+++++.+..+.. .
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~-----l~~~--~~~v~~~d~~~~~~~~~~~~-~  294 (349)
T 1jmx_B          223 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ-----IYGV--LNRLAKYDLKQRKLIKAANL-D  294 (349)
T ss_dssp             ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTE-----EEEE--ESEEEEEETTTTEEEEEEEC-S
T ss_pred             cCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCE-----EEEE--cCeEEEEECccCeEEEEEcC-C
Confidence                                           01244667778 8886     3333  88999999999887766653 3


Q ss_pred             CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee
Q 016257          245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (392)
Q Consensus       245 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  283 (392)
                      ..+.+++|+|+|++|++++.++.|++||+++++.+..+.
T Consensus       295 ~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          295 HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence            456789999999998888889999999999998877663

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.88  E-value=8.5e-21  Score=183.51  Aligned_cols=250  Identities=8%  Similarity=-0.042  Sum_probs=167.5

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC---------C
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---------G  134 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g  134 (392)
                      ....++.|+|||++++++  |++|++||+.+++....+......  ........++|||||++|+.++.+         +
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFD--EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTT--TCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhh--hhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            346689999999888886  899999999888754333222111  112233568999999999998875         5


Q ss_pred             cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCc----------------
Q 016257          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE----------------  198 (392)
Q Consensus       135 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~----------------  198 (392)
                      .+.+||+++++.. .+..+...+...+|||||+.||.+. ++.|++|++.+++..+........                
T Consensus        93 ~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           93 SYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             EEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence            6779999998754 4555667899999999999999885 689999999887754322212111                


Q ss_pred             -ceEEEEecCCCCcceEEEEEE-----------e--------------------CCccEEEEEeCCC---ce--eeeeec
Q 016257          199 -KIELCRFSKDGTKPFLFCTVQ-----------R--------------------GDKALLAVYDIST---WN--KIGHKR  241 (392)
Q Consensus       199 -~v~~~~~~~~~~~~~~~~~~~-----------~--------------------~~d~~i~v~d~~~---~~--~~~~~~  241 (392)
                       ....+.|||||+.+.+...-.           .                    .....|.+||+.+   ++  ....+.
T Consensus       171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~  250 (740)
T 4a5s_A          171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT  250 (740)
T ss_dssp             SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred             CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence             123589999999743211000           0                    0112689999998   73  122222


Q ss_pred             ------ccCCCcEEEEECCCCCEEEEEeC----CCcEEEEecCCce----ee---eeeeccccCcceE-----EEEEeeC
Q 016257          242 ------LLRKPASVLSISLDGKYLAMGSK----DGDICVVDVKKME----IN---HWSKRLHLGTSIA-----LVEFCPT  299 (392)
Q Consensus       242 ------~~~~~v~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~~----~~---~~~~~~~~~~~i~-----~~~~s~~  299 (392)
                            .+...+..++|+|||+.++....    +..|++||+.+++    +.   ..+...+ ...+.     .++|+||
T Consensus       251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~-~~~v~~~~~~~p~fspD  329 (740)
T 4a5s_A          251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST-TGWVGRFRPSEPHFTLD  329 (740)
T ss_dssp             CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS-SSCSSSSSCCCCEECTT
T ss_pred             CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC-CceEccCcCCCceEcCC
Confidence                  25667889999999997665543    2369999999887    22   2222334 44443     7899999


Q ss_pred             CCeEE-EEe-CCC--eEEEEEeecC
Q 016257          300 QRVVL-TAS-KEW--GAMITKLTVP  320 (392)
Q Consensus       300 ~~~l~-~~~-~dg--~i~iw~~~~~  320 (392)
                      |+.|+ ..+ .+|  .|++|++...
T Consensus       330 G~~l~~~~s~~~G~~~l~~~~~~~~  354 (740)
T 4a5s_A          330 GNSFYKIISNEEGYRHICYFQIDKK  354 (740)
T ss_dssp             SSEEEEEEECTTSCEEEEEEETTCS
T ss_pred             CCEEEEEEEcCCCceEEEEEECCCC
Confidence            99876 665 444  5666665543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.87  E-value=3.8e-20  Score=178.94  Aligned_cols=282  Identities=12%  Similarity=0.099  Sum_probs=183.7

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCC-----eeEEEEcCCCCeEE
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-----PMTIAVNPSGDDFV   79 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~sp~~~~l~   79 (392)
                      ....+++|+|++   .+++.+        ++.|.+|+++.        ......+.+|...     ...+.|||||++|+
T Consensus        17 ~~~~~~~w~~dg---~~~~~~--------~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~   77 (740)
T 4a5s_A           17 LKLYSLRWISDH---EYLYKQ--------ENNILVFNAEY--------GNSSVFLENSTFDEFGHSINDYSISPDGQFIL   77 (740)
T ss_dssp             CCCCCEEECSSS---EEEEEE--------TTEEEEEETTT--------CCEEEEECTTTTTTCCSCCCEEEECTTSSEEE
T ss_pred             ccccccEECCCC---cEEEEc--------CCcEEEEECCC--------CceEEEEechhhhhhcccccceEECCCCCEEE
Confidence            457789999998   456643        45577777652        2233446666533     24488999999999


Q ss_pred             EEeCC---------CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecc
Q 016257           80 CSTTN---------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE  150 (392)
Q Consensus        80 ~~~~d---------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  150 (392)
                      .++.+         +.+.+||+.+++... +       ..+...+...+|||||+.|+.+. ++.|++|++.+++.....
T Consensus        78 ~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l-------~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt  148 (740)
T 4a5s_A           78 LEYNYVKQWRHSYTASYDIYDLNKRQLIT-E-------ERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRIT  148 (740)
T ss_dssp             EEEEEEECSSSCEEEEEEEEETTTTEECC-S-------SCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECC
T ss_pred             EEECCeeeEEEccceEEEEEECCCCcEEE-c-------ccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEc
Confidence            98875         567799998876321 1       12456799999999999999885 789999999887755432


Q ss_pred             cCCC-CcE-----------------EEEEecCCCCeEEEEcCCC------------------------------------
Q 016257          151 PKAH-KSV-----------------LDMDFSLDSEFLATTSTDG------------------------------------  176 (392)
Q Consensus       151 ~~~~-~~i-----------------~~i~~~~~~~~l~~~~~d~------------------------------------  176 (392)
                      .... ..+                 ..+.|||||+.|+.++.|.                                    
T Consensus       149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~  228 (740)
T 4a5s_A          149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTV  228 (740)
T ss_dssp             SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEE
T ss_pred             CCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCee
Confidence            2222 222                 2489999999999875321                                    


Q ss_pred             cEEEEECCC---Ce--eeEEEec-----CCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce----eee--ee
Q 016257          177 SARIWKTED---GV--AWTFLTR-----NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN----KIG--HK  240 (392)
Q Consensus       177 ~i~vwd~~~---~~--~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~----~~~--~~  240 (392)
                      +|++||+.+   ++  ....+..     .+...+..++|+||++. +++.+...+.+..|.+||+.+++    +..  .+
T Consensus       229 ~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~-~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l  307 (740)
T 4a5s_A          229 KFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERI-SLQWLRRIQNYSVMDICDYDESSGRWNCLVARQH  307 (740)
T ss_dssp             EEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEE-EEEEEESSTTEEEEEEEEEETTTTEEEECGGGCE
T ss_pred             EEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeE-EEEEeCCCCCEEEEEEEECCCCccccceeEEEEe
Confidence            478899987   63  2233332     14557899999999984 22222223456689999999876    221  11


Q ss_pred             --cccCCCcE-----EEEECCCCCEEE-EEeC-CC--cEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEE-EEeC
Q 016257          241 --RLLRKPAS-----VLSISLDGKYLA-MGSK-DG--DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL-TASK  308 (392)
Q Consensus       241 --~~~~~~v~-----~~~~s~~~~~l~-~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~  308 (392)
                        ..+...+.     .++|+|||+.|+ ..+. +|  .|++||+.+++..... .+  ...+..+.. +|++.|+ +++.
T Consensus       308 ~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT-~g--~~~v~~~~~-~d~~~i~f~~~~  383 (740)
T 4a5s_A          308 IEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFIT-KG--TWEVIGIEA-LTSDYLYYISNE  383 (740)
T ss_dssp             EEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESC-CS--SSCEEEEEE-ECSSEEEEEESC
T ss_pred             eeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecc-cC--CEEEEEEEE-EeCCEEEEEEec
Confidence              33444443     689999999877 6653 33  5888898877665543 22  345555542 4466554 4444


Q ss_pred             ----CCeEEEEEeec
Q 016257          309 ----EWGAMITKLTV  319 (392)
Q Consensus       309 ----dg~i~iw~~~~  319 (392)
                          .+...||.++.
T Consensus       384 ~~~~~~~~~ly~v~~  398 (740)
T 4a5s_A          384 YKGMPGGRNLYKIQL  398 (740)
T ss_dssp             GGGCTTCBEEEEEET
T ss_pred             CCCCCceeEEEEEEC
Confidence                24566666653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.86  E-value=6.3e-20  Score=163.87  Aligned_cols=253  Identities=9%  Similarity=-0.051  Sum_probs=163.3

Q ss_pred             EEeeCCCCCeeE-----EEEcCCCCeEEEEeC-CCe--EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEE
Q 016257           57 YVFDESEGDPMT-----IAVNPSGDDFVCSTT-NGG--CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA  128 (392)
Q Consensus        57 ~~~~~h~~~v~~-----~~~sp~~~~l~~~~~-d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  128 (392)
                      ..+..|......     .+|+|||++|++++. ++.  |.+||+.+++......       .+...+..+.|+|||+.|+
T Consensus        24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~-------~~~~~~~~~~~spdg~~l~   96 (388)
T 3pe7_A           24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE-------GRGDNTFGGFLSPDDDALF   96 (388)
T ss_dssp             EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC-------SSCBCSSSCEECTTSSEEE
T ss_pred             EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee-------CCCCCccceEEcCCCCEEE
Confidence            445566655555     889999999998887 664  7777776665322111       1223344678999999999


Q ss_pred             EEeCCCcEEEEeCCCCceeecccCCCCcEEEEE--ecCCCCeEEEE----------------------cCCCcEEEEECC
Q 016257          129 AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD--FSLDSEFLATT----------------------STDGSARIWKTE  184 (392)
Q Consensus       129 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~--~~~~~~~l~~~----------------------~~d~~i~vwd~~  184 (392)
                      .++.++.|++||+.+++.......+...+....  ++|++++++..                      ..+..|.+||+.
T Consensus        97 ~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  176 (388)
T 3pe7_A           97 YVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK  176 (388)
T ss_dssp             EEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT
T ss_pred             EEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC
Confidence            999999999999999887654444444443333  48999988742                      234679999999


Q ss_pred             CCeeeEEEecCCCcceEEEEecC-CCCcceEEEEEEeCC---ccEEEEEeCCCceeeeeecccC--CCcEEEEECCCCCE
Q 016257          185 DGVAWTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGD---KALLAVYDISTWNKIGHKRLLR--KPASVLSISLDGKY  258 (392)
Q Consensus       185 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~--~~v~~~~~s~~~~~  258 (392)
                      +++...... + ...+..++|+| +++.+.+  ......   ...|.++|...++.. .+..+.  ..+..++|+|||+.
T Consensus       177 ~g~~~~l~~-~-~~~~~~~~~sp~dg~~l~~--~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~  251 (388)
T 3pe7_A          177 TGESTVILQ-E-NQWLGHPIYRPYDDSTVAF--CHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSA  251 (388)
T ss_dssp             TCCEEEEEE-E-SSCEEEEEEETTEEEEEEE--EECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSC
T ss_pred             CCceEEeec-C-CccccccEECCCCCCEEEE--EEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCE
Confidence            886554443 2 23688999999 9886321  111111   347888888765443 333333  24778899999997


Q ss_pred             EEEEeC-CC----cEEEEecCCceeeeeee-ccc--cCcceEEEEEeeCCCeEEEE---------eCCCeEEEEEeecCc
Q 016257          259 LAMGSK-DG----DICVVDVKKMEINHWSK-RLH--LGTSIALVEFCPTQRVVLTA---------SKEWGAMITKLTVPA  321 (392)
Q Consensus       259 l~~~~~-dg----~i~iwd~~~~~~~~~~~-~~~--~~~~i~~~~~s~~~~~l~~~---------~~dg~i~iw~~~~~~  321 (392)
                      |+..+. ++    .|++||+.+++...... ..+  .......+.|+|||+.|+..         ..+..|++|++....
T Consensus       252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (388)
T 3pe7_A          252 LVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT  331 (388)
T ss_dssp             EEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred             EEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence            766443 22    39999999987543321 110  00011223799999987754         456689999987543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.86  E-value=2.8e-18  Score=146.52  Aligned_cols=247  Identities=11%  Similarity=0.052  Sum_probs=175.3

Q ss_pred             CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEe-cCCCCEEEEEeC-CCcEEE
Q 016257           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF-SVDGSRFAAGGV-DGHLRI  138 (392)
Q Consensus        61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~-dg~i~i  138 (392)
                      ++-..+.+++++|+++++++...++.|.+||.. ++....+.. ......+...+..+++ .++++++++... ++.|++
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~-~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGE-CGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECC-BSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecc-cCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            455679999999999988887888999999976 332222211 1111123356889999 467766666533 789999


Q ss_pred             EeCCCCceeecccC-CCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec-CCCcceEEEEecCCCCcceEEE
Q 016257          139 MHWPSLRIILDEPK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFC  216 (392)
Q Consensus       139 ~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~  216 (392)
                      || .+++.+..+.. +...+.+++++|+++++++...++.|.+||. +++.+..+.. .....+..+++++++..     
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l-----  177 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEI-----  177 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEE-----
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCE-----
Confidence            99 56665544432 2346899999999998888778899999996 4555555542 22235889999999873     


Q ss_pred             EEEeCCccEEEEEeCCCceeeeeeccc--CCCcEEEEECCCCCEEEEEeCCC-cEEEEecCCceeeeeeeccccCcceEE
Q 016257          217 TVQRGDKALLAVYDISTWNKIGHKRLL--RKPASVLSISLDGKYLAMGSKDG-DICVVDVKKMEINHWSKRLHLGTSIAL  293 (392)
Q Consensus       217 ~~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~i~~  293 (392)
                      .++...++.|.+||... +.+..+...  ...+..++++++|+++++...++ .|.+||.. ++.+..+........+.+
T Consensus       178 ~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~  255 (286)
T 1q7f_A          178 FISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFD  255 (286)
T ss_dssp             EEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEE
T ss_pred             EEEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCccee
Confidence            46666789999999854 444444332  25688999999999888887775 99999964 444444432221335789


Q ss_pred             EEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          294 VEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       294 ~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      ++++|+|+++++ +.|+.|++|++..
T Consensus       256 i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          256 VALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             EEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             EEECCCCcEEEE-CCCCeEEEEEccc
Confidence            999999987776 6799999999864

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.85  E-value=3.5e-20  Score=165.90  Aligned_cols=284  Identities=11%  Similarity=0.034  Sum_probs=178.8

Q ss_pred             eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCC-eeEEEEcCCCCeEEEEeCCC
Q 016257            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-PMTIAVNPSGDDFVCSTTNG   85 (392)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~sp~~~~l~~~~~d~   85 (392)
                      +.+++|+|+++++.++...        ++...+|.++..+...      . .+..+... ...+.|+|||+.|+.++.++
T Consensus        38 ~~~~~~SpdG~~l~~~~~~--------~g~~~l~~~d~~~~~~------~-~l~~~~~~~~~~~~~spdg~~l~~~~~~~  102 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDF--------DGNRNYYLLNLETQQA------V-QLTEGKGDNTFGGFISTDERAFFYVKNEL  102 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECT--------TSSCEEEEEETTTTEE------E-ECCCSSCBCTTTCEECTTSSEEEEEETTT
T ss_pred             eecCcCCCCCCEEEEEEec--------CCCceEEEEECCCCcE------E-EeecCCCCccccceECCCCCEEEEEEcCC
Confidence            6788999999763333311        1223456666443221      1 22223333 33488999999999999999


Q ss_pred             eEEEEEEeCCccceeeccccCCCCCCCCCeEE-------------------EEecCCCCEEEEE-----eCCCcEEEEeC
Q 016257           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKC-------------------LSFSVDGSRFAAG-----GVDGHLRIMHW  141 (392)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~s~~~~~l~~~-----~~dg~i~i~d~  141 (392)
                      .|++|++.+++........       ......                   +.|+|+++.++..     ..+..|++||+
T Consensus       103 ~l~~~d~~~~~~~~~~~~~-------~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~  175 (396)
T 3c5m_A          103 NLMKVDLETLEEQVIYTVD-------EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDI  175 (396)
T ss_dssp             EEEEEETTTCCEEEEEECC-------TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEET
T ss_pred             cEEEEECCCCCcEEEEecc-------cccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEEC
Confidence            9999998776532222110       111111                   3567888776654     35668999999


Q ss_pred             CCCceeecccCCCCcEEEEEecC-CCCeEEEEcCC------CcEEEEECCCCeeeEEEecCC-CcceEEEEecCCCCcce
Q 016257          142 PSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTD------GSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPF  213 (392)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~  213 (392)
                      .+++.... ..+...+..+.|+| +++.|+..+.+      ..|.+||+..++. ..+..+. ...+..++|+|+++.++
T Consensus       176 ~~g~~~~~-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~  253 (396)
T 3c5m_A          176 ETGELEVI-HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTHEFWIPDGSAMA  253 (396)
T ss_dssp             TTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEEEEECTTSSCEE
T ss_pred             CCCcEEee-ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccceEECCCCCEEE
Confidence            88776433 34455789999999 78877766543      3688899865543 3333222 33578899999999732


Q ss_pred             EEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECC-CCCEEEEEe----------------CCCcEEEEecCCc
Q 016257          214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL-DGKYLAMGS----------------KDGDICVVDVKKM  276 (392)
Q Consensus       214 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----------------~dg~i~iwd~~~~  276 (392)
                      +...-.+...+.|++||+.+++....... . ... +.|+| +|+++++++                .+..|++||+.++
T Consensus       254 ~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~  330 (396)
T 3c5m_A          254 YVSYFKGQTDRVIYKANPETLENEEVMVM-P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK  330 (396)
T ss_dssp             EEEEETTTCCEEEEEECTTTCCEEEEEEC-C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred             EEecCCCCccceEEEEECCCCCeEEeeeC-C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence            21100111225699999988765432221 1 233 89999 999888754                2467999999888


Q ss_pred             eeeeeeeccccCc-----------ceEEEEEeeCCCeEEEEeC-CCeEEEEEeecC
Q 016257          277 EINHWSKRLHLGT-----------SIALVEFCPTQRVVLTASK-EWGAMITKLTVP  320 (392)
Q Consensus       277 ~~~~~~~~~~~~~-----------~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~  320 (392)
                      +.....  .+ ..           .+..++|+|||+.|+.++. ++...+|.++..
T Consensus       331 ~~~~l~--~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~  383 (396)
T 3c5m_A          331 SAQKLC--KH-STSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVP  383 (396)
T ss_dssp             BCCEEE--EC-CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred             ceEEcc--CC-CCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEc
Confidence            754332  22 22           2567899999998877664 567777777643

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.85  E-value=1.2e-18  Score=151.98  Aligned_cols=245  Identities=11%  Similarity=-0.001  Sum_probs=181.6

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCC------------------------CeEEEEEEeCCccceeeccccCCCCCCCCCeEEE
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTN------------------------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCL  118 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d------------------------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~  118 (392)
                      -+.+.+++++|+|+++++...+                        +.|.+||..+++.......      .+-.....+
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~------~~~~~p~gi   96 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK------NLFYLPHGL   96 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT------TTCSSEEEE
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC------CccCCceEE
Confidence            4679999999999988887776                        4699999877765332211      123468899


Q ss_pred             EecCCCCEEEEEeCCCcEEEEeCCCCc-eeecc---------cCCCCcEEEEEecC-CCCeEEEEc-CCCcEEEEECCCC
Q 016257          119 SFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDE---------PKAHKSVLDMDFSL-DSEFLATTS-TDGSARIWKTEDG  186 (392)
Q Consensus       119 ~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~---------~~~~~~i~~i~~~~-~~~~l~~~~-~d~~i~vwd~~~~  186 (392)
                      +++++|+++++...++.|++|+..... .+..+         ..+......++++| +++++++.+ .++.|++|+ .++
T Consensus        97 a~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g  175 (329)
T 3fvz_A           97 SIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG  175 (329)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred             EECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence            999999988888888999999976442 23222         12223688999999 788777776 689999999 467


Q ss_pred             eeeEEEecCCC---------cceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec--ccCCCcEEEEECCC
Q 016257          187 VAWTFLTRNSD---------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR--LLRKPASVLSISLD  255 (392)
Q Consensus       187 ~~~~~~~~~~~---------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~  255 (392)
                      +.+..+.....         .....++++|++..+    .++...++.|++||..+++.+..+.  .+...+..++++| 
T Consensus       176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l----~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-  250 (329)
T 3fvz_A          176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQL----CVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-  250 (329)
T ss_dssp             CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEE----EEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-
T ss_pred             CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEE----EEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-
Confidence            76666642211         237899999994442    5677788999999999888776663  3456788999999 


Q ss_pred             CCEEEE-------EeCCCcEEEEecCCceeeeeee--ccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257          256 GKYLAM-------GSKDGDICVVDVKKMEINHWSK--RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       256 ~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      +..+++       ...+..|++||..+++.+..+.  ..+ ...+..++++|+|.++++...++.|++|++...
T Consensus       251 g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~-~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          251 GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKH-FDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSC-CSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCc-cCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence            333333       3345589999999998887653  234 567899999999988888888999999998754

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.85  E-value=9.8e-19  Score=154.82  Aligned_cols=275  Identities=9%  Similarity=-0.013  Sum_probs=171.5

Q ss_pred             eEEEEeCC--CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC-CCceeecccC-
Q 016257           77 DFVCSTTN--GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP-SLRIILDEPK-  152 (392)
Q Consensus        77 ~l~~~~~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~-  152 (392)
                      .+++|+..  +.|.+|++.............  .......+..++|+|+|++|++++.+ .|.+|++. +++....... 
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~--~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~   80 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRT--EIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP   80 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEE--ECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEE--ccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee
Confidence            35555543  468888775432211111110  00122467889999999999998887 99999997 6665432111 


Q ss_pred             CCCcEEEEEecCCCCe--EEEEc-------------CCCcEEEEECC-CCeeeEEEec---CCCcceEEEEecCCCCcce
Q 016257          153 AHKSVLDMDFSLDSEF--LATTS-------------TDGSARIWKTE-DGVAWTFLTR---NSDEKIELCRFSKDGTKPF  213 (392)
Q Consensus       153 ~~~~i~~i~~~~~~~~--l~~~~-------------~d~~i~vwd~~-~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~  213 (392)
                      ..+....++|+|+|++  +++++             .++.+.+|++. +++....+..   .....+.+++|+|+|+.+ 
T Consensus        81 ~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l-  159 (365)
T 1jof_A           81 IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYL-  159 (365)
T ss_dssp             CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEE-
T ss_pred             cCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEE-
Confidence            1123556899999994  45553             68999999997 4554433331   233468999999999862 


Q ss_pred             EEEEEEeCCccEEEEEeCC-Cceee--eeec--ccCCCcEEEEECCCCCEEEEEeC-CCcEEEEecC--Cceeee---ee
Q 016257          214 LFCTVQRGDKALLAVYDIS-TWNKI--GHKR--LLRKPASVLSISLDGKYLAMGSK-DGDICVVDVK--KMEINH---WS  282 (392)
Q Consensus       214 ~~~~~~~~~d~~i~v~d~~-~~~~~--~~~~--~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~--~~~~~~---~~  282 (392)
                         +++...++.|.+||+. +++..  ..+.  .+...+..++|+|+|+++++++. ++.|.+|+++  +++...   .+
T Consensus       160 ---~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~  236 (365)
T 1jof_A          160 ---YSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSF  236 (365)
T ss_dssp             ---EEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             ---EEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceE
Confidence               2334456899999998 66543  2222  13567899999999999988775 6889999875  455321   11


Q ss_pred             ec------cccCc------ceEEEE-EeeCCCeEEEEeCC-C-----eEEEEEeecCccccc-eeeee----eeeeeee-
Q 016257          283 KR------LHLGT------SIALVE-FCPTQRVVLTASKE-W-----GAMITKLTVPADWKE-WQIYS----LLLALFL-  337 (392)
Q Consensus       283 ~~------~~~~~------~i~~~~-~s~~~~~l~~~~~d-g-----~i~iw~~~~~~~~~~-~~~~~----~~~~~~~-  337 (392)
                      ..      +| ..      .+..++ |+|||++|++++.+ +     .|.+|++........ .....    .+....+ 
T Consensus       237 ~~~~~~~~g~-~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~s  315 (365)
T 1jof_A          237 PLIPPGIPDR-DPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVS  315 (365)
T ss_dssp             ESSCTTCCCB-CTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEE
T ss_pred             EcCCCCcCCc-ccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceec
Confidence            11      11 11      588999 99999988777643 2     899999963222111 00000    0111111 


Q ss_pred             ----eceEEEEeee-cceeeeeccccc
Q 016257          338 ----ASAVVFYIFF-ENSDSFWNFPVA  359 (392)
Q Consensus       338 ----~~~~~~~~~~-d~~i~~W~~~~~  359 (392)
                          ....++++.. ++.|++|++...
T Consensus       316 p~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          316 PCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence                2445666655 489999998754

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.84  E-value=1.3e-18  Score=166.53  Aligned_cols=288  Identities=15%  Similarity=0.058  Sum_probs=183.3

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCee---------EEEEc--
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPM---------TIAVN--   72 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~---------~~~~s--   72 (392)
                      +..+..++|+++.   .+.+.+..    ..++...||.....+.        ...+..|...+.         ...|+  
T Consensus        23 ~~~~~~~~~s~~~---~~~~~~~~----~~~~~~~l~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~S   87 (662)
T 3azo_A           23 SGRPACVGAVGDE---VWWVAPRP----AEAGRATLVRRRADGA--------EESALPAPWNVRNRVFEYSGFPWAGVPR   87 (662)
T ss_dssp             CSCCEEEEEETTE---EEEEEEET----TTTTEEEEEEECTTSC--------EEESSCTTCCBCCCGGGTCCCCEEEECC
T ss_pred             CCccceeEEcCCe---EEEEecCc----ccCCcEEEEEECCCCC--------cceeCCCCccccccccccCCccceeeee
Confidence            3567888888763   23332210    1244577888742211        233455555555         56565  


Q ss_pred             CCCCe-EEEEeC-CCeEEEEEEe--CCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC----------CcEEE
Q 016257           73 PSGDD-FVCSTT-NGGCKLFEVY--GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----------GHLRI  138 (392)
Q Consensus        73 p~~~~-l~~~~~-d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----------g~i~i  138 (392)
                      |||+. |+.++. +..|.++++.  .......+..  .....+...+..++|+|||+.|++++.+          ..|++
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~  165 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTP--VSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAA  165 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSC--CCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEE
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccC--CccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEE
Confidence            99998 776654 3445555543  1022222211  0000134578899999999999998876          58999


Q ss_pred             EeCCC------Cceeeccc-CCCCcEEEEEecCCCCeEEEEcCC--------CcEEEEECC-CC--eeeEEEecCCCcce
Q 016257          139 MHWPS------LRIILDEP-KAHKSVLDMDFSLDSEFLATTSTD--------GSARIWKTE-DG--VAWTFLTRNSDEKI  200 (392)
Q Consensus       139 ~d~~~------~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d--------~~i~vwd~~-~~--~~~~~~~~~~~~~v  200 (392)
                      ||+.+      ++. ..+. .+...+..++|+|||++|+.++.+        ..|++||+. ++  .....+...+...+
T Consensus       166 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~  244 (662)
T 3azo_A          166 VPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAI  244 (662)
T ss_dssp             EETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCE
T ss_pred             EECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceE
Confidence            99987      444 3444 555678889999999999987754        379999998 56  23344444444578


Q ss_pred             EEEEecCCCCcceEEEEEEeCCcc--EEEEEeCCCceeeeeecccCCC--------cEEEEECCCCCEEEEEeCCCcEEE
Q 016257          201 ELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDISTWNKIGHKRLLRKP--------ASVLSISLDGKYLAMGSKDGDICV  270 (392)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~d~--~i~v~d~~~~~~~~~~~~~~~~--------v~~~~~s~~~~~l~~~~~dg~i~i  270 (392)
                      ..++|+|||+.     ++++..++  .|.+||+.+++.......+...        +..++|+|+++++++++. +.++|
T Consensus       245 ~~~~~spdg~l-----~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l  318 (662)
T 3azo_A          245 AQAEWAPDGSL-----IVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL  318 (662)
T ss_dssp             EEEEECTTSCE-----EEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred             cceEECCCCeE-----EEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence            99999999983     45666667  7888887666654333322211        467899999999999998 99999


Q ss_pred             E--ecCCceeeeeeeccccCcceEEE-EEeeCCCeEEEEeCCCeEEEEEee
Q 016257          271 V--DVKKMEINHWSKRLHLGTSIALV-EFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       271 w--d~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      |  |+.+++. ..+ ..+ ...+..+ +++.+.-++++++.+....+|.++
T Consensus       319 ~~~d~~~~~~-~~l-~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d  366 (662)
T 3azo_A          319 GILDPESGEL-VDA-AGP-WTEWAATLTVSGTRAVGVAASPRTAYEVVELD  366 (662)
T ss_dssp             EEEETTTTEE-EEC-CSS-CCEEEEEEEEETTEEEEEEEETTEEEEEEEEE
T ss_pred             EEEECCCCcE-EEe-cCC-CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEE
Confidence            9  6666664 333 345 5667766 444333345566677666777665

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.84  E-value=3.6e-19  Score=170.26  Aligned_cols=249  Identities=10%  Similarity=0.018  Sum_probs=171.8

Q ss_pred             CceEEEeeCCCCCeeEEEEcCCCCeEEEE--eCCCeEEEEEEeCCccceeeccccCCCCCCCCCeE---------EEEec
Q 016257           53 PLVTYVFDESEGDPMTIAVNPSGDDFVCS--TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK---------CLSFS  121 (392)
Q Consensus        53 ~~~~~~~~~h~~~v~~~~~sp~~~~l~~~--~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~s  121 (392)
                      +.....+.+|...+..++|++++-+++..  +.++...||....+.....+..       +...+.         ...|+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~   85 (662)
T 3azo_A           13 PIDAALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALP-------APWNVRNRVFEYSGFPWAGV   85 (662)
T ss_dssp             SCCHHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSC-------TTCCBCCCGGGTCCCCEEEE
T ss_pred             CCCHHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCC-------CCccccccccccCCccceee
Confidence            33334567789999999999876566666  4578899999754433222221       222333         45554


Q ss_pred             --CCCCE-EEEEeC-CCcEEEEeCC--C-CceeecccC-----CCCcEEEEEecCCCCeEEEEcCC----------CcEE
Q 016257          122 --VDGSR-FAAGGV-DGHLRIMHWP--S-LRIILDEPK-----AHKSVLDMDFSLDSEFLATTSTD----------GSAR  179 (392)
Q Consensus       122 --~~~~~-l~~~~~-dg~i~i~d~~--~-~~~~~~~~~-----~~~~i~~i~~~~~~~~l~~~~~d----------~~i~  179 (392)
                        |||++ |+.++. +..|+++++.  . ++ ...+..     +...+.+++|+|||+.|++++.+          ..|+
T Consensus        86 ~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~  164 (662)
T 3azo_A           86 PRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLA  164 (662)
T ss_dssp             CCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred             eecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEE
Confidence              99998 776654 5667777765  2 33 333433     34578899999999999988876          5899


Q ss_pred             EEECCC------CeeeEEEe-cCCCcceEEEEecCCCCcceEEEEEEeCC--------ccEEEEEeCC-Cc---eeeeee
Q 016257          180 IWKTED------GVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQRGD--------KALLAVYDIS-TW---NKIGHK  240 (392)
Q Consensus       180 vwd~~~------~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--------d~~i~v~d~~-~~---~~~~~~  240 (392)
                      +||+.+      ++. ..+. .+ ...+..++|+|||+.     ++..+.        ...|.+||+. ++   +.....
T Consensus       165 ~~~~~~~~~~~~~~~-~~l~~~~-~~~~~~~~~SpDG~~-----la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~  237 (662)
T 3azo_A          165 AVPLDGSAAADRSAV-RELSDDA-HRFVTGPRLSPDGRQ-----AVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL  237 (662)
T ss_dssp             EEETTSTTTTCGGGS-EESSCSC-SSEECCCEECTTSSE-----EEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred             EEECCCCccccCCce-eEEEecC-CCcccCceECCCCCE-----EEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence            999987      443 4444 33 346788999999997     333332        2589999998 56   443333


Q ss_pred             cccCCCcEEEEECCCCCEEEEEeCCC--cEEEEecCCceeeeeeeccccCcc--------eEEEEEeeCCCeEEEEeCCC
Q 016257          241 RLLRKPASVLSISLDGKYLAMGSKDG--DICVVDVKKMEINHWSKRLHLGTS--------IALVEFCPTQRVVLTASKEW  310 (392)
Q Consensus       241 ~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~--------i~~~~~s~~~~~l~~~~~dg  310 (392)
                      ..+...+..++|+|||++++++..++  .|.+||+.+++...... .+ ...        +..++|+|+++++++++. +
T Consensus       238 ~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~-~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~  314 (662)
T 3azo_A          238 GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR-RE-EEFAGPLWTPGMRWFAPLANGLIAVVHGK-G  314 (662)
T ss_dssp             EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC-CS-SBSSCCCCSTTCCSEEECTTSCEEEEEBS-S
T ss_pred             CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc-cc-ccccCccccccCceEeEeCCCEEEEEEEc-C
Confidence            44467889999999999888888888  56677776776554432 22 221        567899999999999998 9


Q ss_pred             eEEEEEeec
Q 016257          311 GAMITKLTV  319 (392)
Q Consensus       311 ~i~iw~~~~  319 (392)
                      .++||.++.
T Consensus       315 ~~~l~~~d~  323 (662)
T 3azo_A          315 AAVLGILDP  323 (662)
T ss_dssp             SCEEEEEET
T ss_pred             ccEEEEEEC
Confidence            999997764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.81  E-value=2.9e-17  Score=144.78  Aligned_cols=247  Identities=11%  Similarity=0.080  Sum_probs=158.1

Q ss_pred             cCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe----------CCCeEEEEEEeCCccceeecc
Q 016257           34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLA  103 (392)
Q Consensus        34 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~  103 (392)
                      ++.+.+|+.  .+      ......+..+..+  .++|+|||+++++++          .++.|.+||..+.+....+..
T Consensus        30 d~~v~v~D~--~t------~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~   99 (361)
T 2oiz_A           30 ESRVHVYDY--TN------GKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISL   99 (361)
T ss_dssp             GCEEEEEET--TT------CCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEE
T ss_pred             cCeEEEEEC--CC------CeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEc
Confidence            556666653  32      2223445555444  899999999999886          356799999887765544432


Q ss_pred             ccCCCCCCCCCeEEEEecCCCCEEEEEeC--CCcEEEEeCCCCceeec-ccCCCCcEEEEEecCCC-CeEEEEcCCCc--
Q 016257          104 KKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILD-EPKAHKSVLDMDFSLDS-EFLATTSTDGS--  177 (392)
Q Consensus       104 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~-~~l~~~~~d~~--  177 (392)
                      .. ....+......++++|||++|+++..  ++.|.+||+++++.+.. +...  ....+.+.|++ ..+++.+.||.  
T Consensus       100 ~~-~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~  176 (361)
T 2oiz_A          100 PP-KRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLL  176 (361)
T ss_dssp             CT-TBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEE
T ss_pred             Cc-cccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEE
Confidence            11 01112345678999999999998874  57899999999877655 3221  11112333332 23333334444  


Q ss_pred             ----------------------------------------------EEEEECCCCee--eEEEecCC---------Ccce
Q 016257          178 ----------------------------------------------ARIWKTEDGVA--WTFLTRNS---------DEKI  200 (392)
Q Consensus       178 ----------------------------------------------i~vwd~~~~~~--~~~~~~~~---------~~~v  200 (392)
                                                                    +.++|+.....  ...+....         ....
T Consensus       177 ~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~  256 (361)
T 2oiz_A          177 TINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGY  256 (361)
T ss_dssp             EEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCS
T ss_pred             EEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCe
Confidence                                                          44444432211  11111000         0001


Q ss_pred             EEEEecCCCCcceEEEEEEe--C-------CccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 016257          201 ELCRFSKDGTKPFLFCTVQR--G-------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVV  271 (392)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~--~-------~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  271 (392)
                      ..++|+|++..+|.   ...  +       ..+.|.+||+.+++.+..+..+.  ...++|+|||++|++++. +.|.+|
T Consensus       257 ~~~a~~~dg~~lyv---~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~  330 (361)
T 2oiz_A          257 NLVGLHRASGRMYV---FMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVY  330 (361)
T ss_dssp             SCEEEETTTTEEEE---EEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEE
T ss_pred             eEEEEecCCCeEEE---EEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEE
Confidence            12688999887432   211  1       14589999999999998887766  899999999999998887 999999


Q ss_pred             ecCCc--eeeeeeeccccCcceEEEEEeeCCC
Q 016257          272 DVKKM--EINHWSKRLHLGTSIALVEFCPTQR  301 (392)
Q Consensus       272 d~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~  301 (392)
                      |..++  +.+..+ ..+ ......++++|+|+
T Consensus       331 D~~t~~l~~~~~i-~~~-G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          331 DISQPEPKLLRTI-EGA-AEASLQVQFHPVGG  360 (361)
T ss_dssp             ECSSSSCEEEEEE-TTS-CSSEEEEEECCCSC
T ss_pred             ECCCCcceeeEEe-ccC-CCCcEEEEecCCCC
Confidence            99999  887765 234 66788999999986

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.81  E-value=9e-18  Score=147.52  Aligned_cols=256  Identities=10%  Similarity=0.010  Sum_probs=164.3

Q ss_pred             CCeeEEEEcCCCCeEEEEe---------CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC-
Q 016257           64 GDPMTIAVNPSGDDFVCST---------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-  133 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-  133 (392)
                      ..+..+++  ||+.++...         .++.|.+|++.+++.. .+           ..+..++|||||++|+..+.+ 
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l-----------~~~~~~~~SpDg~~la~~~~~~   80 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI-----------ENATMPRISPDGKKIAFMRANE   80 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE-----------ESCEEEEECTTSSEEEEEEEET
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec-----------ccCCCeEECCCCCEEEEEEecc
Confidence            45667777  888887642         2567888888776521 11           357889999999999887654 


Q ss_pred             --C--cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCC---------------------------CcEEEEE
Q 016257          134 --G--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD---------------------------GSARIWK  182 (392)
Q Consensus       134 --g--~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---------------------------~~i~vwd  182 (392)
                        +  .|++|++.+++..... .... +..+.|+||++.|+.++.+                           ..|++||
T Consensus        81 ~~~~~~l~~~~~~~g~~~~l~-~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d  158 (347)
T 2gop_A           81 EKKVSEIWVADLETLSSKKIL-EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFD  158 (347)
T ss_dssp             TTTEEEEEEEETTTTEEEEEE-EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEE
T ss_pred             CCCcceEEEEECCCCceEEEE-cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEE
Confidence              2  3888888877654333 2333 8999999999998887632                           5699999


Q ss_pred             CCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCC---------ccEEEEEeCCCceeeeeecccCCCcEEEEEC
Q 016257          183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD---------KALLAVYDISTWNKIGHKRLLRKPASVLSIS  253 (392)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s  253 (392)
                      +.+++.+..+..  . .+..++|+|++ .     ++++..         ...|.++|  +++.. .+..+ ..+..+  +
T Consensus       159 ~~~~~~~~~l~~--~-~~~~~~~spdg-~-----~~~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~-~~~~~~--s  223 (347)
T 2gop_A          159 TESEEVIEEFEK--P-RFSSGIWHRDK-I-----VVNVPHREIIPQYFKFWDIYIWE--DGKEE-KMFEK-VSFYAV--D  223 (347)
T ss_dssp             TTTTEEEEEEEE--E-TTCEEEEETTE-E-----EEEEECCCSSCCSSCCEEEEEEE--TTEEE-EEEEE-ESEEEE--E
T ss_pred             CCCCeEEeeecC--C-CcccccCCCCe-E-----EEEEecccccccccccccEEEeC--CCceE-EeccC-cceeeE--C
Confidence            988877455544  2 57899999999 3     233322         23566666  44433 33333 444444  9


Q ss_pred             CCCCEEEEEeCC--------CcEEEEecCCceeeeeeeccccCcceEE-EEEeeCCCeEEEEeCCCeEEEEEeecCcccc
Q 016257          254 LDGKYLAMGSKD--------GDICVVDVKKMEINHWSKRLHLGTSIAL-VEFCPTQRVVLTASKEWGAMITKLTVPADWK  324 (392)
Q Consensus       254 ~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  324 (392)
                      |+|++|+.++.+        ..|.+||  +++..... ..+ ...+.. +.|+ ++ ++++++.++.+++| +..+....
T Consensus       224 pdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~-~~~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~  296 (347)
T 2gop_A          224 SDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL-DEV-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKP  296 (347)
T ss_dssp             ECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS-TTC-CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEE
T ss_pred             CCCCEEEEEEccccCCccccceEEEEC--CCceEecc-ccC-CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEE
Confidence            999998887754        3688888  55544333 345 567886 9999 88 88999999999999 88322111


Q ss_pred             ceeeeeeeeeeeeeceEEEEeeeccee-eeeccc
Q 016257          325 EWQIYSLLLALFLASAVVFYIFFENSD-SFWNFP  357 (392)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~d~~i-~~W~~~  357 (392)
                      .......+.........+++...++.. ++|.+.
T Consensus       297 ~~~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          297 IAKGRHWIMGFDVDEIVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EECSSSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred             EecCCCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence            111001111111112445555555554 777765

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.81  E-value=1.2e-17  Score=146.81  Aligned_cols=224  Identities=13%  Similarity=0.081  Sum_probs=152.1

Q ss_pred             CCeeEEEEcCCCCeEEEEeCC---Ce--EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC-----
Q 016257           64 GDPMTIAVNPSGDDFVCSTTN---GG--CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----  133 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d---~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----  133 (392)
                      ..+..++|+|||++|+..+.+   +.  |.+|++.+++.. .+..       +.. +..++|+|||+.|+.++.+     
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~-~l~~-------~~~-~~~~~wspdg~~l~~~~~~~~~~~  129 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK-KILE-------AKN-IRSLEWNEDSRKLLIVGFKRREDE  129 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE-EEEE-------ESE-EEEEEECTTSSEEEEEEECCCC--
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE-EEEc-------CCC-ccceeECCCCCEEEEEEccCCCcC
Confidence            468899999999999987654   34  666666655422 1111       123 8899999999999887642     


Q ss_pred             ----------------------CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCC-------cEEEEECC
Q 016257          134 ----------------------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG-------SARIWKTE  184 (392)
Q Consensus       134 ----------------------g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-------~i~vwd~~  184 (392)
                                            ..|++||+.+++.+..+.. . .+..+.|+|+| +++++..+.       ...+|.+.
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d  206 (347)
T 2gop_A          130 DFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE  206 (347)
T ss_dssp             -------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE
T ss_pred             CcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC
Confidence                                  5689999988876333333 3 78889999999 777775542       34555444


Q ss_pred             CCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCC-------ccEEEEEeCCCceeeeeecccCCCcEE-EEECCCC
Q 016257          185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-------KALLAVYDISTWNKIGHKRLLRKPASV-LSISLDG  256 (392)
Q Consensus       185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------d~~i~v~d~~~~~~~~~~~~~~~~v~~-~~~s~~~  256 (392)
                      +++. ..+..+  ..+..+  +|+|+.++    +.+..       ...|.+||  +++.......+...+.. +.|+ ++
T Consensus       207 ~~~~-~~l~~~--~~~~~~--spdg~~l~----~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg  274 (347)
T 2gop_A          207 DGKE-EKMFEK--VSFYAV--DSDGERIL----LYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK  274 (347)
T ss_dssp             TTEE-EEEEEE--ESEEEE--EECSSCEE----EEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE
T ss_pred             CCce-EEeccC--cceeeE--CCCCCEEE----EEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc
Confidence            4443 334333  344444  99999732    22222       35788998  55554444455667776 8999 88


Q ss_pred             CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeE-EEEEee
Q 016257          257 KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGA-MITKLT  318 (392)
Q Consensus       257 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i-~iw~~~  318 (392)
                       ++++++.++.++|| +.+++.....  .+ ...|.+++|+|  .++++++.++.. .+|.+.
T Consensus       275 -~~~~~~~~~~~~l~-~~~g~~~~~~--~~-~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          275 -VYFTLFEEGSVNLY-IWDGEIKPIA--KG-RHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             -EEEEEEETTEEEEE-EESSSEEEEE--CS-SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             -EEEEEecCCcEEEE-EcCCceEEEe--cC-CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence             88999999999999 8866554332  34 67899999999  677777777665 788775

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.81  E-value=1.8e-17  Score=159.50  Aligned_cols=244  Identities=12%  Similarity=0.039  Sum_probs=169.9

Q ss_pred             CCCCeeEEEEcCCCCeEEEEeCCC-----eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCc-
Q 016257           62 SEGDPMTIAVNPSGDDFVCSTTNG-----GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH-  135 (392)
Q Consensus        62 h~~~v~~~~~sp~~~~l~~~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-  135 (392)
                      |...+..++|||||++||.+..++     .|++||+.+++........        ..+..++|+|||+.|+.++.++. 
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~--------~~~~~~~wspDg~~l~~~~~~~~~  194 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--------VKFSCMAWTHDGKGMFYNAYPQQD  194 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--------ECSCCEEECTTSSEEEEEECCCCS
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC--------cccceEEEEeCCCEEEEEEECCcc
Confidence            445688999999999998776543     8999999888754322211        12567999999999999887765 


Q ss_pred             ---------------EEEEeCCCCce----eecccCCCCcEEEEEecCCCCeEEEEcC-----CCcEEEEECCC------
Q 016257          136 ---------------LRIMHWPSLRI----ILDEPKAHKSVLDMDFSLDSEFLATTST-----DGSARIWKTED------  185 (392)
Q Consensus       136 ---------------i~i~d~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~~~~~-----d~~i~vwd~~~------  185 (392)
                                     |++|++.+++.    +.....+...+..+.|+|||++|+.++.     +..|++||+.+      
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~  274 (710)
T 2xdw_A          195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT  274 (710)
T ss_dssp             SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred             ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccC
Confidence                           99999987762    2222223345789999999999887764     56899999976      


Q ss_pred             Ce-eeEEEecCCCcceEEEEecCCCCcceEEEEEEeC---CccEEEEEeCCCcee--eeeecccC--CCcEEEEECCCCC
Q 016257          186 GV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG---DKALLAVYDISTWNK--IGHKRLLR--KPASVLSISLDGK  257 (392)
Q Consensus       186 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~d~~i~v~d~~~~~~--~~~~~~~~--~~v~~~~~s~~~~  257 (392)
                      +. ....+..+.. .+.. .|+|++..++    +.+.   ....|.+||+.++..  ...+..+.  ..+..++|++++.
T Consensus       275 ~~~~~~~l~~~~~-~~~~-~~s~dg~~l~----~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  348 (710)
T 2xdw_A          275 GILKWVKLIDNFE-GEYD-YVTNEGTVFT----FKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF  348 (710)
T ss_dssp             SSCCCEEEECSSS-SCEE-EEEEETTEEE----EEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE
T ss_pred             CccceEEeeCCCC-cEEE-EEeccCCEEE----EEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE
Confidence            43 3455554443 3333 5889988732    2222   245899999987642  23333333  2577899998888


Q ss_pred             EEEEEeCCCc--EEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEE-e---CCCeEEEEEeecCc
Q 016257          258 YLAMGSKDGD--ICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA-S---KEWGAMITKLTVPA  321 (392)
Q Consensus       258 ~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~---~dg~i~iw~~~~~~  321 (392)
                      ++++...|+.  |.+||+.+++....+ ..+ .+.+..++++|+++.++.. +   ..+.+..|++..+.
T Consensus       349 lv~~~~~~g~~~l~~~~~~~g~~~~~l-~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          349 LVLCYLHDVKNTLQLHDLATGALLKIF-PLE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEE-CCC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEEECCEEEEEEEECCCCCEEEec-CCC-CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            8888888885  566777677655554 345 6788999999998765533 2   24789999987654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.81  E-value=2.2e-18  Score=154.18  Aligned_cols=239  Identities=9%  Similarity=-0.061  Sum_probs=158.5

Q ss_pred             eeEEEEcCCCCeEEEEeCC---CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257           66 PMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (392)
Q Consensus        66 v~~~~~sp~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  142 (392)
                      +..++|+|||++|+.....   ..|.+|++.+++.. .+..      .+......+.|+|||++|+.++.++.|++||+.
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~-~l~~------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~  110 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV-QLTE------GKGDNTFGGFISTDERAFFYVKNELNLMKVDLE  110 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE-ECCC------SSCBCTTTCEECTTSSEEEEEETTTEEEEEETT
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE-Eeec------CCCCccccceECCCCCEEEEEEcCCcEEEEECC
Confidence            7788999999998877543   36777887666432 1111      011122337899999999999999999999998


Q ss_pred             CCceeecccCCCCcEEE-------------------EEecCCCCeEEEE-----cCCCcEEEEECCCCeeeEEEecCCCc
Q 016257          143 SLRIILDEPKAHKSVLD-------------------MDFSLDSEFLATT-----STDGSARIWKTEDGVAWTFLTRNSDE  198 (392)
Q Consensus       143 ~~~~~~~~~~~~~~i~~-------------------i~~~~~~~~l~~~-----~~d~~i~vwd~~~~~~~~~~~~~~~~  198 (392)
                      +++.......+......                   +.|+|+++.++..     ..+..|++||+.+++......  ...
T Consensus       111 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~--~~~  188 (396)
T 3c5m_A          111 TLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ--DTA  188 (396)
T ss_dssp             TCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE--ESS
T ss_pred             CCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc--CCc
Confidence            87754433322222222                   3567888877654     356689999998877655443  233


Q ss_pred             ceEEEEecC-CCCcceEEEEEEeCCc----cEEEEEeCCCceeeeeeccc-CCCcEEEEECCCCCEEEEEeCC-----Cc
Q 016257          199 KIELCRFSK-DGTKPFLFCTVQRGDK----ALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLAMGSKD-----GD  267 (392)
Q Consensus       199 ~v~~~~~~~-~~~~~~~~~~~~~~~d----~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-----g~  267 (392)
                      .+..+.|+| ++..++   .......    ..|.+||+..++........ ...+..++|+|+|++|+.++.+     +.
T Consensus       189 ~~~~~~~sp~dg~~l~---~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  265 (396)
T 3c5m_A          189 WLGHPIYRPFDDSTVG---FCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRV  265 (396)
T ss_dssp             CEEEEEEETTEEEEEE---EEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEE
T ss_pred             ccccceECCCCCCEEE---EEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccce
Confidence            688999999 776522   1222222    57999998765533222211 2357788999999988777544     34


Q ss_pred             EEEEecCCceeeeeeeccccCcceEEEEEee-CCCeEEEEe----------------CCCeEEEEEeecCc
Q 016257          268 ICVVDVKKMEINHWSKRLHLGTSIALVEFCP-TQRVVLTAS----------------KEWGAMITKLTVPA  321 (392)
Q Consensus       268 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~----------------~dg~i~iw~~~~~~  321 (392)
                      |++||+.+++...... ..   ... +.|+| ||+++++++                .++.|++|++....
T Consensus       266 l~~~d~~~g~~~~l~~-~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (396)
T 3c5m_A          266 IYKANPETLENEEVMV-MP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS  331 (396)
T ss_dssp             EEEECTTTCCEEEEEE-CC---SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred             EEEEECCCCCeEEeee-CC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence            9999999887654331 11   233 89999 999888765                34688899886544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.81  E-value=1.5e-16  Score=138.97  Aligned_cols=271  Identities=11%  Similarity=0.024  Sum_probs=179.9

Q ss_pred             CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe
Q 016257            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (392)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~   82 (392)
                      .+.+|.+++|+++...+..+         ..+..++.|. .          .....+..+...+.+++|+|+|++++++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~g~l~~~~~   63 (333)
T 2dg1_A            4 SQQDLPTLFYSGKSNSAVPI---------ISESELQTIT-A----------EPWLEISKKGLQLEGLNFDRQGQLFLLDV   63 (333)
T ss_dssp             --CCCCBCCSCGGGGCSSCC---------CCGGGSCEEE-C----------EEEEEEESSCCCEEEEEECTTSCEEEEET
T ss_pred             cccccceeeecCCccceeEE---------eecccCcccc-c----------ceeEEEeccCccccCcEECCCCCEEEEEC
Confidence            35678999999987442211         1244566661 1          12234556677789999999999777888


Q ss_pred             CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC----CcEEEEeCCCCceeeccc--CCCCc
Q 016257           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRIMHWPSLRIILDEP--KAHKS  156 (392)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~--~~~~~  156 (392)
                      .++.|.+||..+++......       .+...+.+++++++|+++++...+    +.|.+||.++++......  .....
T Consensus        64 ~~~~i~~~d~~~~~~~~~~~-------~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~  136 (333)
T 2dg1_A           64 FEGNIFKINPETKEIKRPFV-------SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYC  136 (333)
T ss_dssp             TTCEEEEECTTTCCEEEEEE-------CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCC
T ss_pred             CCCEEEEEeCCCCcEEEEee-------CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCc
Confidence            88999999987665332211       134578999999999887777666    689999988776542221  23347


Q ss_pred             EEEEEecCCCCeEEEEcC------CCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEe
Q 016257          157 VLDMDFSLDSEFLATTST------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (392)
Q Consensus       157 i~~i~~~~~~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d  230 (392)
                      +.+++++|+++++++...      .+.|..+|..+++... +.... ..+..++|+|+++.+    .++...++.|.+||
T Consensus       137 ~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~-~~~~~i~~~~dg~~l----~v~~~~~~~i~~~d  210 (333)
T 2dg1_A          137 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNI-SVANGIALSTDEKVL----WVTETTANRLHRIA  210 (333)
T ss_dssp             EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEE-SSEEEEEECTTSSEE----EEEEGGGTEEEEEE
T ss_pred             ccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCC-CcccceEECCCCCEE----EEEeCCCCeEEEEE
Confidence            899999999987776653      2456666665444433 22221 247889999999852    24455678999999


Q ss_pred             CCC-ceeeee-----eccc--CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCc------ceEEEEE
Q 016257          231 IST-WNKIGH-----KRLL--RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT------SIALVEF  296 (392)
Q Consensus       231 ~~~-~~~~~~-----~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~i~~~~~  296 (392)
                      +++ +.....     ....  ...+..++++++|+++++...++.|.+||.. ++....+. .+ ..      .+.+++|
T Consensus       211 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~-~~-~~~~g~~~~~~~~~~  287 (333)
T 2dg1_A          211 LEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQIL-IP-GRDEGHMLRSTHPQF  287 (333)
T ss_dssp             ECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEE-CT-TGGGTCSCBCCEEEE
T ss_pred             ecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEE-cC-CCccccccCcceEEE
Confidence            863 222211     1011  1356789999999988887778899999984 55444442 22 22      6899999


Q ss_pred             eeCCCeEEEEeCC
Q 016257          297 CPTQRVVLTASKE  309 (392)
Q Consensus       297 s~~~~~l~~~~~d  309 (392)
                      +||++.|+.++.+
T Consensus       288 ~~dg~~L~v~~~~  300 (333)
T 2dg1_A          288 IPGTNQLIICSND  300 (333)
T ss_dssp             CTTSCEEEEEEEC
T ss_pred             CCCCCEEEEEeCc
Confidence            9998777655554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.79  E-value=9.5e-17  Score=137.75  Aligned_cols=235  Identities=11%  Similarity=-0.024  Sum_probs=164.8

Q ss_pred             EeeCCCCCeeEEEEcCCCC-eEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcE
Q 016257           58 VFDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (392)
Q Consensus        58 ~~~~h~~~v~~~~~sp~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  136 (392)
                      .+..+.....+++|+|+++ .++++..++.|..|+..++  ...+..       +...+.+++++++|+++++...++.|
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~-------~~~~~~~l~~~~dg~l~v~~~~~~~i   92 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH-------PSHHQNGHCLNKQGHLIACSHGLRRL   92 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES-------SCSSEEEEEECTTCCEEEEETTTTEE
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC-------CCCCcceeeECCCCcEEEEecCCCeE
Confidence            3445567789999999998 6778888899999998765  222211       34578999999999988777667899


Q ss_pred             EEEeCCCCceeecccCC----CCcEEEEEecCCCCeEEEE----c-------------CCCcEEEEECCCCeeeEEEecC
Q 016257          137 RIMHWPSLRIILDEPKA----HKSVLDMDFSLDSEFLATT----S-------------TDGSARIWKTEDGVAWTFLTRN  195 (392)
Q Consensus       137 ~i~d~~~~~~~~~~~~~----~~~i~~i~~~~~~~~l~~~----~-------------~d~~i~vwd~~~~~~~~~~~~~  195 (392)
                      .+||.++++........    ...+.+++++|+|+++++.    +             ..+.|..++.. ++. ..+..+
T Consensus        93 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~  170 (296)
T 3e5z_A           93 ERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRD  170 (296)
T ss_dssp             EEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECC
T ss_pred             EEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecC
Confidence            99999887754322111    1246789999999988873    2             12355555554 433 333333


Q ss_pred             CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC-Ccee---eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 016257          196 SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNK---IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVV  271 (392)
Q Consensus       196 ~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~-~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  271 (392)
                       ......++|+|+++.     +++...++.|.+||+. .++.   ...+......+..++++++|++.++.  ++.|.+|
T Consensus       171 -~~~~~gi~~s~dg~~-----lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~  242 (296)
T 3e5z_A          171 -RVKPNGLAFLPSGNL-----LVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVL  242 (296)
T ss_dssp             -CSSEEEEEECTTSCE-----EEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred             -CCCCccEEECCCCCE-----EEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence             335789999999996     5667778999999986 4433   22222334556789999999876665  7889999


Q ss_pred             ecCCceeeeeeeccccCcceEEEEE-eeCCCeEEEEeCCCeEEEEEee
Q 016257          272 DVKKMEINHWSKRLHLGTSIALVEF-CPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       272 d~~~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      |.+ ++....+. .+ .. +++++| +|+++.|++++.+   .+|.++
T Consensus       243 ~~~-g~~~~~~~-~~-~~-~~~~~f~~~d~~~L~v~t~~---~l~~~~  283 (296)
T 3e5z_A          243 TPD-GDELGRVL-TP-QT-TSNLCFGGPEGRTLYMTVST---EFWSIE  283 (296)
T ss_dssp             CTT-SCEEEEEE-CS-SC-CCEEEEESTTSCEEEEEETT---EEEEEE
T ss_pred             CCC-CCEEEEEE-CC-CC-ceeEEEECCCCCEEEEEcCC---eEEEEE
Confidence            987 56555553 34 44 899999 5888888888877   455554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.79  E-value=1.5e-17  Score=159.67  Aligned_cols=244  Identities=11%  Similarity=-0.009  Sum_probs=163.6

Q ss_pred             CCCCCeeEEEEcCCCCeEEEE-----eCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCc
Q 016257           61 ESEGDPMTIAVNPSGDDFVCS-----TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (392)
Q Consensus        61 ~h~~~v~~~~~sp~~~~l~~~-----~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  135 (392)
                      +|...+..++|||||++||.+     +.+..|++||+.+++.....   .   +.. .....++|+|||+.|+.++.|..
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~---~---~~~-~~~~~~~wspDg~~l~~~~~d~~  190 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD---V---IEG-GKYATPKWTPDSKGFYYEWLPTD  190 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC---C---BSC-CTTCCCEECTTSSEEEEEECCCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc---c---cCc-ccccceEEecCCCEEEEEEecCC
Confidence            455679999999999999843     34568999999888643000   0   111 11267999999999999988776


Q ss_pred             -------------EEEEeCCCCc----eeecccCCCCcEEEEEecCCCCeEEEEcCCC----cEEEEECCCCeeeEEEec
Q 016257          136 -------------LRIMHWPSLR----IILDEPKAHKSVLDMDFSLDSEFLATTSTDG----SARIWKTEDGVAWTFLTR  194 (392)
Q Consensus       136 -------------i~i~d~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~----~i~vwd~~~~~~~~~~~~  194 (392)
                                   |++|++.+++    .+.....+...+..+.|+|||++|+.++.++    .|++++..+++ ...+..
T Consensus       191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~  269 (695)
T 2bkl_A          191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVK  269 (695)
T ss_dssp             TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEE
T ss_pred             CCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeec
Confidence                         9999998776    2333333445788999999999998877665    67777665554 344444


Q ss_pred             CCCcceEEEEecCCCCcceEEEEEEeC---CccEEEEEeCCCcee--eeeeccc--CCCcEEEEECCCCCEEEEEeCCCc
Q 016257          195 NSDEKIELCRFSKDGTKPFLFCTVQRG---DKALLAVYDISTWNK--IGHKRLL--RKPASVLSISLDGKYLAMGSKDGD  267 (392)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~---~d~~i~v~d~~~~~~--~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~  267 (392)
                      +.. .+....+ +++. ++    +.+.   .++.|.+||+.+++.  ...+..+  ...+..++++ ++.++++...|+.
T Consensus       270 ~~~-~~~~~~~-~~g~-l~----~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~  341 (695)
T 2bkl_A          270 GVG-AKYEVHA-WKDR-FY----VLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT  341 (695)
T ss_dssp             CSS-CCEEEEE-ETTE-EE----EEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE
T ss_pred             CCC-ceEEEEe-cCCc-EE----EEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence            433 3455556 5665 32    3333   468999999987653  1222222  4457788888 6778888889998


Q ss_pred             EEEEecC-CceeeeeeeccccCcceEEEEEeeCCCeEEEEe----CCCeEEEEEeecCc
Q 016257          268 ICVVDVK-KMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS----KEWGAMITKLTVPA  321 (392)
Q Consensus       268 i~iwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----~dg~i~iw~~~~~~  321 (392)
                      .+||.+. +++....+.... .+.+..++++|+++.++...    ..+.|++|++..+.
T Consensus       342 ~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          342 SEVRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEEEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            8888655 344444332222 56678889999998666332    24789999987543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.79  E-value=1.5e-15  Score=140.56  Aligned_cols=280  Identities=10%  Similarity=0.036  Sum_probs=186.8

Q ss_pred             ecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEE
Q 016257           10 GSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKL   89 (392)
Q Consensus        10 ~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~i   89 (392)
                      ..|..|..++.+++. .      .++.+.+++.+  +      ......+.. ...+..+.|+|||+++++++.++.|.+
T Consensus       159 ~~~~~d~~~~~~V~~-~------~~~~V~viD~~--t------~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~v  222 (567)
T 1qks_A          159 QMNDWDLENLFSVTL-R------DAGQIALIDGS--T------YEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNM  222 (567)
T ss_dssp             CCSCCCGGGEEEEEE-T------TTTEEEEEETT--T------CCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             cccccCCCceEEEEe-C------CCCeEEEEECC--C------CeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEE
Confidence            345666555344442 2      24445555543  2      222333432 345779999999999999999999999


Q ss_pred             EEEe--CCccceeeccccCCCCCCCCCeEEEEec----CCCCEEEEEeC-CCcEEEEeCCCCceeecccCC---------
Q 016257           90 FEVY--GGATDINLLAKKMPPLQDAGPQKCLSFS----VDGSRFAAGGV-DGHLRIMHWPSLRIILDEPKA---------  153 (392)
Q Consensus        90 w~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~---------  153 (392)
                      ||+.  +.+...++..        ......++|+    |||+++++++. ++.+.++|..+.+.+..+...         
T Consensus       223 iD~~~~t~~~v~~i~~--------G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~  294 (567)
T 1qks_A          223 IDLWMKEPTTVAEIKI--------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY  294 (567)
T ss_dssp             EETTSSSCCEEEEEEC--------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE
T ss_pred             EECCCCCCcEeEEEec--------CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccc
Confidence            9985  5544433321        2346789999    69999888765 589999999998876554321         


Q ss_pred             --CCcEEEEEecCCCCe-EEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEe
Q 016257          154 --HKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (392)
Q Consensus       154 --~~~i~~i~~~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d  230 (392)
                        ...+..+..++++.. ++....+|.|.++|....+.+.............+.|+|+++++    +++...++.|.++|
T Consensus       295 ~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~----~va~~~sn~V~ViD  370 (567)
T 1qks_A          295 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF----ITAANARNKLVVID  370 (567)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE----EEEEGGGTEEEEEE
T ss_pred             cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEE----EEEeCCCCeEEEEE
Confidence              125778888887654 45556679999999987644333222233357889999999973    35556788999999


Q ss_pred             CCCceeeeeecc-----cCCCcEEEEECCCCCEE-EEEe-CCCcEEEEecCC-------ceeeeeeeccccCcceEEEEE
Q 016257          231 ISTWNKIGHKRL-----LRKPASVLSISLDGKYL-AMGS-KDGDICVVDVKK-------MEINHWSKRLHLGTSIALVEF  296 (392)
Q Consensus       231 ~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l-~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~i~~~~~  296 (392)
                      +.+++.+.....     |.+....+ ++|++..+ +++. .++.|.++|..+       .+.++.+.. . ...-..+..
T Consensus       371 ~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~-~-g~g~~~i~~  447 (567)
T 1qks_A          371 TKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA-L-GGGSLFIKT  447 (567)
T ss_dssp             TTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC-S-CSCCCCEEC
T ss_pred             CCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEec-C-CCCCEEEEe
Confidence            999887655543     22212122 57875544 4443 468999999987       556665532 2 233345778


Q ss_pred             eeCCCeEEEEeC-------CCeEEEEEeecC
Q 016257          297 CPTQRVVLTASK-------EWGAMITKLTVP  320 (392)
Q Consensus       297 s~~~~~l~~~~~-------dg~i~iw~~~~~  320 (392)
                      +|+++++.+...       .++|.++|+...
T Consensus       448 ~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          448 HPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             CTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             CCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence            999999888763       359999999866

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.78  E-value=1.5e-16  Score=134.43  Aligned_cols=242  Identities=7%  Similarity=-0.011  Sum_probs=169.6

Q ss_pred             CeeEEEEcCCCCeEE-EEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 016257           65 DPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (392)
Q Consensus        65 ~v~~~~~sp~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~  143 (392)
                      .+.+++++|+|+.++ +...++.|.+|+..+..... ..      ..+...+.+++++++|+++++.. ++.|.+||...
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~------~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~   96 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LP------FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGS   96 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-CC------CCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-Ee------eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCC
Confidence            788999999998666 44677889999865543211 10      11234678899999998666555 88999999876


Q ss_pred             CceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCc
Q 016257          144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (392)
Q Consensus       144 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (392)
                      .............+..++++++++++++...++.|.+|+..+......... ....+..+++++++..     .++...+
T Consensus        97 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~p~~i~~~~~g~l-----~v~~~~~  170 (270)
T 1rwi_B           97 NNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT-GLNDPDGVAVDNSGNV-----YVTDTDN  170 (270)
T ss_dssp             SCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC-SCCSCCCEEECTTCCE-----EEEEGGG
T ss_pred             ceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc-cCCCceeEEEeCCCCE-----EEEECCC
Confidence            544322222335789999999999877777788999997655443222111 1225788999999873     4555567


Q ss_pred             cEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeE
Q 016257          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV  303 (392)
Q Consensus       224 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  303 (392)
                      +.|.+||................+..++++++|.++++...++.|.+||..+....... ..+ ...+.+++++++|+++
T Consensus       171 ~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~-~~~-~~~p~~i~~~~~g~l~  248 (270)
T 1rwi_B          171 NRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP-FTG-LNTPLAVAVDSDRTVY  248 (270)
T ss_dssp             TEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECC-CCS-CSCEEEEEECTTCCEE
T ss_pred             CEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeec-cCC-CCCceeEEECCCCCEE
Confidence            89999999876554333333356889999999977777777889999998765543322 222 3578999999999988


Q ss_pred             EEEeCCCeEEEEEeecCcc
Q 016257          304 LTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       304 ~~~~~dg~i~iw~~~~~~~  322 (392)
                      ++...++.|+++++..++.
T Consensus       249 v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          249 VADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             EEEGGGTEEEEECCCGGGS
T ss_pred             EEECCCCEEEEEcCCCccc
Confidence            8888999999999876543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=3.3e-16  Score=136.46  Aligned_cols=254  Identities=11%  Similarity=0.097  Sum_probs=172.3

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCC------------------CCcCceeEEEEcCCCCccccCCceEEEe-eCCCCC
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRAS------------------SSPSVLEIFSFDPKTTSVYTSPLVTYVF-DESEGD   65 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~------------------~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~h~~~   65 (392)
                      +.+.+++++|++   .+++.+.....-                  ..++  .++.++..+..+      ...+ .++-..
T Consensus        24 ~~v~~va~d~~G---~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~g~~------~~~~~~~~~~~   92 (329)
T 3fvz_A           24 GQVSGVALDSKN---NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEED--TILVIDPNNAEI------LQSSGKNLFYL   92 (329)
T ss_dssp             SCEEEEEECTTC---CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSC--CEEEECTTTCCE------EEEECTTTCSS
T ss_pred             CCceEEEECCCC---CEEEEeCCCCeEEeeccCcceeecccccccccCC--cEEEEECCCCeE------EeccCCCccCC
Confidence            468999999987   345544332100                  0012  255555543222      2222 245568


Q ss_pred             eeEEEEcCCCCeEEEEeCCCeEEEEEEeCCc-cceeeccccC--CCCCCCCCeEEEEecC-CCCEEEEEe-CCCcEEEEe
Q 016257           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA-TDINLLAKKM--PPLQDAGPQKCLSFSV-DGSRFAAGG-VDGHLRIMH  140 (392)
Q Consensus        66 v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~~--~~~~~~~~v~~~~~s~-~~~~l~~~~-~dg~i~i~d  140 (392)
                      +..++++|+|+++++...++.|++|+..... ....+.....  ....+......++++| ++.++++.+ .++.|++|+
T Consensus        93 p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~  172 (329)
T 3fvz_A           93 PHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS  172 (329)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC
T ss_pred             ceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc
Confidence            9999999999988888888999999975442 2222211000  0012334689999999 788777776 689999999


Q ss_pred             CCCCceeecccC----------CCCcEEEEEecCC-CCeEEEEcCCCcEEEEECCCCeeeEEEecC-CCcceEEEEecC-
Q 016257          141 WPSLRIILDEPK----------AHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSK-  207 (392)
Q Consensus       141 ~~~~~~~~~~~~----------~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~-  207 (392)
                       .+++.+..+..          .-.....++++|+ +.++++...++.|++||..+++.+..+... ....+..++|+| 
T Consensus       173 -~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg  251 (329)
T 3fvz_A          173 -PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPG  251 (329)
T ss_dssp             -TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETT
T ss_pred             -CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCC
Confidence             55665544421          1124889999998 677777778899999999888888877532 334688999999 


Q ss_pred             -----CCCcceEEEEEEeCCccEEEEEeCCCceeeeeec---ccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 016257          208 -----DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR---LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (392)
Q Consensus       208 -----~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  275 (392)
                           ++..     .++...+..|++||..+++.+..+.   .+......++++|+|.++++...++.|++|++..
T Consensus       252 ~~~~~~g~~-----~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          252 FLFAVNGKP-----YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEEECCC-----CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EEEEeCCCE-----EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence                 2221     1223345689999999998877763   4556789999999998888888899999999864

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.78  E-value=7e-15  Score=126.04  Aligned_cols=242  Identities=9%  Similarity=0.033  Sum_probs=171.5

Q ss_pred             eeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEE
Q 016257           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (392)
Q Consensus        59 ~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  138 (392)
                      +..+...+.+++++++|+.+++...++.|.+||.. ++. ......     .....+.++++.++|.++++...++.|..
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~~~-----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~   82 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEYPLP-----TPDAKVMCLTISSDGEVWFTENAANKIGR   82 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEECS-----STTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEecCC-----cccCceeeEEECCCCCEEEeCCCCCeEEE
Confidence            34455789999999999877766667889999876 432 221111     12357899999999988777766888999


Q ss_pred             EeCCCCcee-ecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEE
Q 016257          139 MHWPSLRII-LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (392)
Q Consensus       139 ~d~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (392)
                      |+.. ++.. .........+..++++++++++++...++.|..||. +++............+..+++++++..     .
T Consensus        83 ~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l-----~  155 (299)
T 2z2n_A           83 ITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNAL-----W  155 (299)
T ss_dssp             ECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCE-----E
T ss_pred             ECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCE-----E
Confidence            9976 3322 222223447899999999988888777889999998 554433222223346889999999863     3


Q ss_pred             EEeCCccEEEEEeCCCceeeee-ecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEE
Q 016257          218 VQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF  296 (392)
Q Consensus       218 ~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~  296 (392)
                      ++...++.|..||. +++.... .......+..++++++|++.++...++.|.+||. +++........+ ...+.++++
T Consensus       156 v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~  232 (299)
T 2z2n_A          156 FTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTP-NARPHAITA  232 (299)
T ss_dssp             EEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEE
T ss_pred             EEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCC-CCCceeEEE
Confidence            45556789999998 5554332 2223456789999999997777666788999999 666443322223 567899999


Q ss_pred             eeCCCeEEEEeCCCeEEEEEe
Q 016257          297 CPTQRVVLTASKEWGAMITKL  317 (392)
Q Consensus       297 s~~~~~l~~~~~dg~i~iw~~  317 (392)
                      +++|+++++...++.|..|+.
T Consensus       233 ~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          233 GAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             CSTTCEEEEETTTTEEEEEET
T ss_pred             CCCCCEEEeccCCceEEEECC
Confidence            999987776667789999987

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.77  E-value=1.1e-15  Score=130.41  Aligned_cols=235  Identities=6%  Similarity=-0.035  Sum_probs=162.2

Q ss_pred             CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccC------CCCcEEEEEe-cCCCCeEEEEcC-CCcEEEEEC
Q 016257          112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK------AHKSVLDMDF-SLDSEFLATTST-DGSARIWKT  183 (392)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~i~~i~~-~~~~~~l~~~~~-d~~i~vwd~  183 (392)
                      -..+.+++++++++++++...++.|.+||.+ ++....+..      +...+..+++ .++++++++... ++.|++|| 
T Consensus        29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-  106 (286)
T 1q7f_A           29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-  106 (286)
T ss_dssp             BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred             cCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-
Confidence            3568999999999988888889999999986 554443321      2246889999 467766666543 78999999 


Q ss_pred             CCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec--ccCCCcEEEEECCCCCEEEE
Q 016257          184 EDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR--LLRKPASVLSISLDGKYLAM  261 (392)
Q Consensus       184 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~  261 (392)
                      .+++.+..+.......+..++++|++..     .++...++.|.+||.. ++.+..+.  .+...+..++++|+|+++++
T Consensus       107 ~~g~~~~~~~~~~~~~~~~i~~~~~g~l-----~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~  180 (286)
T 1q7f_A          107 QYGQFVRKFGATILQHPRGVTVDNKGRI-----IVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFIS  180 (286)
T ss_dssp             TTSCEEEEECTTTCSCEEEEEECTTSCE-----EEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred             CCCcEEEEecCccCCCceEEEEeCCCCE-----EEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence            5677776665444446899999999974     4666678899999965 44444443  23346889999999998888


Q ss_pred             EeCCCcEEEEecCCceeeeeee-ccccCcceEEEEEeeCCCeEEEEeCCC-eEEEEEeecCccccceeeee---eeeeee
Q 016257          262 GSKDGDICVVDVKKMEINHWSK-RLHLGTSIALVEFCPTQRVVLTASKEW-GAMITKLTVPADWKEWQIYS---LLLALF  336 (392)
Q Consensus       262 ~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~---~~~~~~  336 (392)
                      ...++.|++||... +.+..+. .++ ...+..++++++|+++++...++ .|.+|+... .....+....   .+.+..
T Consensus       181 ~~~~~~i~~~~~~g-~~~~~~~~~g~-~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~i~  257 (286)
T 1q7f_A          181 DNRAHCVKVFNYEG-QYLRQIGGEGI-TNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-QLISALESKVKHAQCFDVA  257 (286)
T ss_dssp             EGGGTEEEEEETTC-CEEEEESCTTT-SCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-CEEEEEEESSCCSCEEEEE
T ss_pred             ECCCCEEEEEcCCC-CEEEEEccCCc-cCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-CEEEEEcccCCCCcceeEE
Confidence            77889999999754 4333332 122 35789999999999888888776 999998542 2211221110   122222


Q ss_pred             e-eceEEEEeeecceeeeeccc
Q 016257          337 L-ASAVVFYIFFENSDSFWNFP  357 (392)
Q Consensus       337 ~-~~~~~~~~~~d~~i~~W~~~  357 (392)
                      . ..+.++.+..++.|++|++.
T Consensus       258 ~~~~g~l~vs~~~~~v~v~~~~  279 (286)
T 1q7f_A          258 LMDDGSVVLASKDYRLYIYRYV  279 (286)
T ss_dssp             EETTTEEEEEETTTEEEEEECS
T ss_pred             ECCCCcEEEECCCCeEEEEEcc
Confidence            2 23345555678999999875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.76  E-value=4.2e-14  Score=121.14  Aligned_cols=279  Identities=6%  Similarity=-0.034  Sum_probs=183.5

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d   84 (392)
                      ..+.++++.+++   .+.+....      ++.  ++.+++. ...     ....+..+...+.+++++++|+.+++...+
T Consensus        15 ~~~~~i~~d~~g---~l~v~~~~------~~~--v~~~d~~-~~~-----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~   77 (299)
T 2z2n_A           15 TGPYGITVSDKG---KVWITQHK------ANM--ISCINLD-GKI-----TEYPLPTPDAKVMCLTISSDGEVWFTENAA   77 (299)
T ss_dssp             CCEEEEEECTTS---CEEEEETT------TTE--EEEECTT-CCE-----EEEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred             CCccceEECCCC---CEEEEecC------CCc--EEEEcCC-CCe-----EEecCCcccCceeeEEECCCCCEEEeCCCC
Confidence            467888888876   33332221      122  4555544 211     112223345789999999999877776667


Q ss_pred             CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeec-ccCCCCcEEEEEec
Q 016257           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMDFS  163 (392)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~i~~~  163 (392)
                      +.|..|+.. ++ ...+..   +  .....+..+++.++++++++...++.|..||. +++.... .......+..++++
T Consensus        78 ~~i~~~~~~-g~-~~~~~~---~--~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~  149 (299)
T 2z2n_A           78 NKIGRITKK-GI-IKEYTL---P--NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLG  149 (299)
T ss_dssp             TEEEEECTT-SC-EEEEEC---S--STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred             CeEEEECCC-Cc-EEEEeC---C--CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEc
Confidence            889999865 22 111111   0  13457899999999988777777889999998 5544322 22233468999999


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeee-ecc
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRL  242 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~  242 (392)
                      ++++.+++...++.|..||. +++............+..+++++++..     .++...++.|.+||. +++.... ...
T Consensus       150 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l-----~v~~~~~~~i~~~~~-~g~~~~~~~~~  222 (299)
T 2z2n_A          150 SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDAL-----WFVEIIGNKIGRITT-SGEITEFKIPT  222 (299)
T ss_dssp             TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSE-----EEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred             CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCE-----EEEccCCceEEEECC-CCcEEEEECCC
Confidence            99988887777789999998 665543222222345789999999873     355556788999999 5554322 222


Q ss_pred             cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      ....+.+++++++|++.++...++.|..||. +++........+ ...+.++++ ++|+++++.+ .+.+..++...
T Consensus       223 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~-~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~  295 (299)
T 2z2n_A          223 PNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIK-SAEPHGICF-DGETIWFAME-CDKIGKLTLIK  295 (299)
T ss_dssp             TTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSS-SCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred             CCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCC-CCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence            3467889999999987666657788999998 455433322233 567899999 8888766655 56676666553

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.76  E-value=2.1e-14  Score=126.59  Aligned_cols=242  Identities=7%  Similarity=-0.090  Sum_probs=163.1

Q ss_pred             EEEEcCCCCeEEEEe----------CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC--CCc
Q 016257           68 TIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGH  135 (392)
Q Consensus        68 ~~~~sp~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~  135 (392)
                      .++++|||++++++.          .++.|.+||..+.+....+................+.|+|||++|+++..  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            999999999999876          36779999998776554443210011111123468999999999998874  478


Q ss_pred             EEEEeCCCCceeec-ccCCCCcEEEEEecCCC-CeEEEEcCCCcEEEEECCCCeeeEEEe-----cCCCcceEEEEecCC
Q 016257          136 LRIMHWPSLRIILD-EPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLT-----RNSDEKIELCRFSKD  208 (392)
Q Consensus       136 i~i~d~~~~~~~~~-~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~  208 (392)
                      |.++| ++++.+.. +... .   ++.+.|++ +.+++.+.||.+.++|. +++......     ...........+.++
T Consensus       150 v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~  223 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK  223 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence            99999 99887765 4322 2   24455654 45667778999999999 777663322     111111123456676


Q ss_pred             CCcceEEEEEEeCCccEEEEEeCCCcee--eeeecc----------cCCCcEEEEECCCCCEEEEEeC----------CC
Q 016257          209 GTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRL----------LRKPASVLSISLDGKYLAMGSK----------DG  266 (392)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~--~~~~~~----------~~~~v~~~~~s~~~~~l~~~~~----------dg  266 (392)
                      +..     ++..+..+.+.+.|+.....  +..+..          .......++++|+++.+++...          ++
T Consensus       224 ~~~-----~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~  298 (373)
T 2mad_H          224 SGR-----IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK  298 (373)
T ss_pred             CCE-----EEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCC
Confidence            654     22233567899999875422  122111          1123445789999998888653          35


Q ss_pred             cEEEEecCCceeeeeeeccccCcceEEEEEeeCCC-eEEEEe-CCCeEEEEEeecCccc
Q 016257          267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTAS-KEWGAMITKLTVPADW  323 (392)
Q Consensus       267 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~  323 (392)
                      .|.++|..+++.+..+..   .....+++|+|||+ .++++. .++.|.++|+...+..
T Consensus       299 ~V~VID~~t~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          299 EVTSVTGLVGQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             eEEEEECCCCEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence            799999999999887743   34689999999999 777777 5899999999866543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.76  E-value=2.5e-15  Score=130.66  Aligned_cols=236  Identities=10%  Similarity=-0.035  Sum_probs=167.5

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CCCcEEEEeCC
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWP  142 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~  142 (392)
                      ..+..+.+. +++.+++...++.|.+||..+++....+.        .......+++++++ .++++. .++.|.+||.+
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~--------~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~  113 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT--------GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPK  113 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE--------CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETT
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC--------CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECC
Confidence            346777774 34455555667899999999887655542        23467899999998 455555 78999999999


Q ss_pred             CCceeecccCCC-----CcEEEEEecCCCCeEEEEc--CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257          143 SLRIILDEPKAH-----KSVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (392)
Q Consensus       143 ~~~~~~~~~~~~-----~~i~~i~~~~~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (392)
                      +++....+....     .....+++  +++.++++.  .++.|.++|+++++.+..+....  ....++++|+++.    
T Consensus       114 t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~--~p~~i~~~~dG~l----  185 (328)
T 3dsm_A          114 TYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI--QPTSLVMDKYNKM----  185 (328)
T ss_dssp             TTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS--CBCCCEECTTSEE----
T ss_pred             CCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC--CccceEEcCCCCE----
Confidence            988765443322     14456677  344555544  48899999999998888776532  4678999999874    


Q ss_pred             EEEEeCCc----------cEEEEEeCCCceeeeeeccc-CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee-e
Q 016257          216 CTVQRGDK----------ALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS-K  283 (392)
Q Consensus       216 ~~~~~~~d----------~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~  283 (392)
                       .+++..+          +.|.++|..+++....+... ......++++|+++.|+++..  .|.+||..+++..... .
T Consensus       186 -~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~  262 (328)
T 3dsm_A          186 -WTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFL  262 (328)
T ss_dssp             -EEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSB
T ss_pred             -EEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeee
Confidence             3444433          78999999988876555432 346889999999999988765  8999999988764321 1


Q ss_pred             ccccCcceEEEEEee-CCCeEEEE----eCCCeEEEEEeecCcc
Q 016257          284 RLHLGTSIALVEFCP-TQRVVLTA----SKEWGAMITKLTVPAD  322 (392)
Q Consensus       284 ~~~~~~~i~~~~~s~-~~~~l~~~----~~dg~i~iw~~~~~~~  322 (392)
                      ... ......++++| ++.++++.    ..++.|.+|+.. ++.
T Consensus       263 ~~~-~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~  304 (328)
T 3dsm_A          263 EFR-DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL  304 (328)
T ss_dssp             CCC-SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE
T ss_pred             cCC-CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE
Confidence            111 35789999999 45555555    567899999987 443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.74  E-value=3.2e-16  Score=138.07  Aligned_cols=233  Identities=10%  Similarity=-0.004  Sum_probs=152.6

Q ss_pred             CCCeEEEEe------CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC----------CCcEE
Q 016257           74 SGDDFVCST------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----------DGHLR  137 (392)
Q Consensus        74 ~~~~l~~~~------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~  137 (392)
                      +++++++..      .|+.|.+||..+++....+..       +..+  .++|+|||++++++..          ++.|.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~-------g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~   84 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPT-------AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVE   84 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEEC-------CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEE
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecC-------CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEE
Confidence            555565543      367899999887765443322       1223  8999999999998863          56799


Q ss_pred             EEeCCCCceeecccCC------CCcEEEEEecCCCCeEEEEcC--CCcEEEEECCCCeeeEE-EecCCC--------cce
Q 016257          138 IMHWPSLRIILDEPKA------HKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTF-LTRNSD--------EKI  200 (392)
Q Consensus       138 i~d~~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~~~~~--d~~i~vwd~~~~~~~~~-~~~~~~--------~~v  200 (392)
                      +||..+++.+..+...      ......++++|||++|+++..  +++|.+||+++++.+.. +.....        ...
T Consensus        85 v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~  164 (361)
T 2oiz_A           85 VWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPR  164 (361)
T ss_dssp             EEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSS
T ss_pred             EEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCe
Confidence            9999988876655322      134667899999999998864  57899999999988776 432110        001


Q ss_pred             EEEEecCCCCcceEE---------------------------------EEEEeCCccEEEEEeCCCceee--eeecc---
Q 016257          201 ELCRFSKDGTKPFLF---------------------------------CTVQRGDKALLAVYDISTWNKI--GHKRL---  242 (392)
Q Consensus       201 ~~~~~~~~~~~~~~~---------------------------------~~~~~~~d~~i~v~d~~~~~~~--~~~~~---  242 (392)
                      .-+++++++...++.                                 .++..+.++.+.++|+......  ..+..   
T Consensus       165 ~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~  244 (361)
T 2oiz_A          165 SFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLND  244 (361)
T ss_dssp             EEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCH
T ss_pred             eEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCc
Confidence            112233333211000                                 0112223456777776543211  11100   


Q ss_pred             ---c----CCCcEEEEECCCCCEEEEEeC-----------CCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEE
Q 016257          243 ---L----RKPASVLSISLDGKYLAMGSK-----------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL  304 (392)
Q Consensus       243 ---~----~~~v~~~~~s~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  304 (392)
                         .    ......++++|+++.++++..           .+.|.+||+.+++.+..+. .+ .  +.+++|+|||++|+
T Consensus       245 ~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~-~~-~--p~~ia~spdg~~l~  320 (361)
T 2oiz_A          245 EDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP-GR-D--ALSMTIDQQRNLML  320 (361)
T ss_dssp             HHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE-CT-T--CCEEEEETTTTEEE
T ss_pred             cccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe-cC-C--eeEEEECCCCCEEE
Confidence               0    011123789999888887653           3479999999999988774 44 3  99999999999999


Q ss_pred             EEeCCCeEEEEEeecC
Q 016257          305 TASKEWGAMITKLTVP  320 (392)
Q Consensus       305 ~~~~dg~i~iw~~~~~  320 (392)
                      +++. +.|.+||....
T Consensus       321 v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          321 TLDG-GNVNVYDISQP  335 (361)
T ss_dssp             EECS-SCEEEEECSSS
T ss_pred             EeCC-CeEEEEECCCC
Confidence            8887 99999998865

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.74  E-value=5.5e-16  Score=149.89  Aligned_cols=244  Identities=12%  Similarity=0.028  Sum_probs=158.9

Q ss_pred             CCCCeeEEEEcCCCCeEEEEeCC-----CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCc-
Q 016257           62 SEGDPMTIAVNPSGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH-  135 (392)
Q Consensus        62 h~~~v~~~~~sp~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-  135 (392)
                      |...+..++|||||++||.+..+     ..|++||+.+++.......        ...+..++|+|| +.|+.++.++. 
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~--------~~~~~~~~wspD-~~l~~~~~~~~~  231 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK--------WVKFSGLAWLGN-DALLYSRFAEPK  231 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE--------EEESCCCEESTT-SEEEEEECCCC-
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC--------CceeccEEEECC-CEEEEEEecCcc
Confidence            44468899999999999877543     3699999988875332111        111357899999 99988876654 


Q ss_pred             -------------EEEEeCCCCce----eecccCCCCcEEEEEecCCCCeEEEEcCCC-----cEEEEECCCC--eeeEE
Q 016257          136 -------------LRIMHWPSLRI----ILDEPKAHKSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDG--VAWTF  191 (392)
Q Consensus       136 -------------i~i~d~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~-----~i~vwd~~~~--~~~~~  191 (392)
                                   |++|++.++..    +.....+...+..+.|+|||++|+..+.++     .|++||+.++  +....
T Consensus       232 ~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~  311 (741)
T 1yr2_A          232 EGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTA  311 (741)
T ss_dssp             -------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEE
T ss_pred             cccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEE
Confidence                         88999877652    222222223588999999999988776543     7999999876  31455


Q ss_pred             EecCCCcceEEEEecCCCCcceEEEEEEe--CCccEEEEEeCCCc--eeeeeecccCCCcEEEEECCCCCEEEEEeCCCc
Q 016257          192 LTRNSDEKIELCRFSKDGTKPFLFCTVQR--GDKALLAVYDISTW--NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD  267 (392)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~d~~i~v~d~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  267 (392)
                      +..+.. ..... ++|++..++   +.+.  ..++.|.+||+.++  +....+..+...+..++++ ++.++++...|+.
T Consensus       312 l~~~~~-~~~~~-~~~dg~~l~---~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~  385 (741)
T 1yr2_A          312 LIPDLK-AQWDF-VDGVGDQLW---FVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK  385 (741)
T ss_dssp             EECSSS-SCEEE-EEEETTEEE---EEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE
T ss_pred             ecCCCC-ceEEE-EeccCCEEE---EEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence            554443 33444 348888632   1221  23567999999874  2333333344456677877 5677888888888


Q ss_pred             EEEEecC-CceeeeeeeccccCcceEEEEEeeCCCeEEEE-e---CCCeEEEEEeecCc
Q 016257          268 ICVVDVK-KMEINHWSKRLHLGTSIALVEFCPTQRVVLTA-S---KEWGAMITKLTVPA  321 (392)
Q Consensus       268 i~iwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~---~dg~i~iw~~~~~~  321 (392)
                      .+||.+. +++....+...+ .+.+..++++|+++.|+.. +   ..+.+++|++..+.
T Consensus       386 ~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          386 SQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            7777554 344444442223 5678999999998866533 2   24788999886543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.73  E-value=6e-15  Score=124.63  Aligned_cols=217  Identities=7%  Similarity=-0.064  Sum_probs=166.8

Q ss_pred             CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCC
Q 016257           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (392)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  153 (392)
                      .++.|++++.++.|++||.++++...++....      ...+.++.++|+|++++  +.++.|..||. +++.+.++..+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~------~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~   74 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK------GWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP   74 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCT------TCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc------cCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC
Confidence            35789999999999999988888766654321      13578999999999888  34778999998 78887777654


Q ss_pred             C-CcEEEEEecCCCCeEEEEcC-CCcEEEEECCCCeeeEEEecCCC-----cceEEEEecCCCCcceEEEEEEeCCccEE
Q 016257          154 H-KSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSD-----EKIELCRFSKDGTKPFLFCTVQRGDKALL  226 (392)
Q Consensus       154 ~-~~i~~i~~~~~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~d~~i  226 (392)
                      . ..+.++.+.++|+.+++.+. ++.+..+|. +++.+..+.....     .....+++.+++..     +++...++.|
T Consensus        75 ~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~-----lv~~~~~~~v  148 (276)
T 3no2_A           75 AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNY-----LVPLFATSEV  148 (276)
T ss_dssp             TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCE-----EEEETTTTEE
T ss_pred             CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCE-----EEEecCCCEE
Confidence            3 37889999999999998877 777888885 6777766643211     23456678899986     6788889999


Q ss_pred             EEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccc----cCcceEEEEEeeCCCe
Q 016257          227 AVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH----LGTSIALVEFCPTQRV  302 (392)
Q Consensus       227 ~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~i~~~~~s~~~~~  302 (392)
                      ..||.+ ++.+..+... ....++...++|+++++++.+++|..+|..+++.+..+....    .-..+..+...++|.+
T Consensus       149 ~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i  226 (276)
T 3no2_A          149 REIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL  226 (276)
T ss_dssp             EEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred             EEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence            999998 8887776654 345567888999999999988899999999999877664221    0123788888999998


Q ss_pred             EEEEe
Q 016257          303 VLTAS  307 (392)
Q Consensus       303 l~~~~  307 (392)
                      +++..
T Consensus       227 ~v~~~  231 (276)
T 3no2_A          227 YICNW  231 (276)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            87774

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.73  E-value=1.4e-15  Score=130.47  Aligned_cols=240  Identities=10%  Similarity=0.054  Sum_probs=160.6

Q ss_pred             eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 016257            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (392)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~   86 (392)
                      ..+++|+|++..  +++++..      ++.  |+.+++.+.        ...+..+...+.+++++|+|+++++...++.
T Consensus        30 ~eg~~~d~~g~~--l~~~~~~------~~~--i~~~~~~~~--------~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~   91 (296)
T 3e5z_A           30 TEGPVYVPARSA--VIFSDVR------QNR--TWAWSDDGQ--------LSPEMHPSHHQNGHCLNKQGHLIACSHGLRR   91 (296)
T ss_dssp             EEEEEEEGGGTE--EEEEEGG------GTE--EEEEETTSC--------EEEEESSCSSEEEEEECTTCCEEEEETTTTE
T ss_pred             ccCCeEeCCCCE--EEEEeCC------CCE--EEEEECCCC--------eEEEECCCCCcceeeECCCCcEEEEecCCCe
Confidence            467889998753  3443333      233  455554432        2335556788999999999998877766788


Q ss_pred             EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEE----e-------------CCCcEEEEeCCCCceeec
Q 016257           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG----G-------------VDGHLRIMHWPSLRIILD  149 (392)
Q Consensus        87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~-------------~dg~i~i~d~~~~~~~~~  149 (392)
                      |.+||..+++.........   ......+..++++|+|+++++.    +             ..+.|..++.. ++. ..
T Consensus        92 i~~~d~~~g~~~~~~~~~~---~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~  166 (296)
T 3e5z_A           92 LERQREPGGEWESIADSFE---GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SA  166 (296)
T ss_dssp             EEEECSTTCCEEEEECEET---TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EE
T ss_pred             EEEEcCCCCcEEEEeeccC---CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EE
Confidence            9999986665322211100   0112356789999999988873    2             12456666554 333 33


Q ss_pred             ccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECC-CCee---eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccE
Q 016257          150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVA---WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (392)
Q Consensus       150 ~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~  225 (392)
                      ...+......++|+|+++.+++.+.++.|++|++. +++.   ...+ ......+..++++++|..      ..+. ++.
T Consensus       167 ~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l------~v~~-~~~  238 (296)
T 3e5z_A          167 PIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLI------WASA-GDG  238 (296)
T ss_dssp             EECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCE------EEEE-TTE
T ss_pred             eecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCE------EEEc-CCe
Confidence            34444567899999999988777788999999986 4443   2333 223345678999999983      3333 788


Q ss_pred             EEEEeCCCceeeeeecccCCCcEEEEE-CCCCCEEEEEeCCCcEEEEecCCceeee
Q 016257          226 LAVYDISTWNKIGHKRLLRKPASVLSI-SLDGKYLAMGSKDGDICVVDVKKMEINH  280 (392)
Q Consensus       226 i~v~d~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~  280 (392)
                      |.+||.. ++.+..+..+.. +++++| +|+++.|++++.++ +.-++.++.++.+
T Consensus       239 v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~~  291 (296)
T 3e5z_A          239 VHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLEH  291 (296)
T ss_dssp             EEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBCCC
T ss_pred             EEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccccc
Confidence            9999987 666666666666 889999 68999999988764 6666776665543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.71  E-value=3.5e-15  Score=129.80  Aligned_cols=266  Identities=9%  Similarity=-0.019  Sum_probs=178.0

Q ss_pred             CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (392)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~  162 (392)
                      .++.|.++|..+++.......... ..........+.+. +++..++...++.|.++|.++++.+.++. .......+++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n-~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~   91 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRAN-GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHF   91 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHH-SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhc-CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEE
Confidence            378899999988775443321100 01122345777774 34455555567999999999999876663 3356889999


Q ss_pred             cCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCC----cceEEEEecCCCCcceEEEEEEeC-CccEEEEEeCCCceee
Q 016257          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----EKIELCRFSKDGTKPFLFCTVQRG-DKALLAVYDISTWNKI  237 (392)
Q Consensus       163 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~-~d~~i~v~d~~~~~~~  237 (392)
                      +++++.+++...++.|.+||..+++....+.....    .....+++  ++..+    .++.. .++.|.++|.++++.+
T Consensus        92 ~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~l----yv~~~~~~~~v~viD~~t~~~~  165 (328)
T 3dsm_A           92 LSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYV----YVNCWSYQNRILKIDTETDKVV  165 (328)
T ss_dssp             EETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEE----EEEECTTCCEEEEEETTTTEEE
T ss_pred             eCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEE----EEEcCCCCCEEEEEECCCCeEE
Confidence            99885444444789999999999988877764431    13556777  34442    23333 4889999999998877


Q ss_pred             eeecccCCCcEEEEECCCCCEEEEEeCC----------CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEe
Q 016257          238 GHKRLLRKPASVLSISLDGKYLAMGSKD----------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS  307 (392)
Q Consensus       238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  307 (392)
                      ..+.. ......++++|+|++++++..+          +.|.++|..+++....+.... ......++|+|+++.|+++.
T Consensus       166 ~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~  243 (328)
T 3dsm_A          166 DELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWIN  243 (328)
T ss_dssp             EEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEES
T ss_pred             EEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEc
Confidence            66654 3345678999999977776654          789999999998776654322 34789999999999888876


Q ss_pred             CCCeEEEEEeecCcccc--ceee-eeeeeeeeee--ceEEEEee-----ecceeeeecccccccc
Q 016257          308 KEWGAMITKLTVPADWK--EWQI-YSLLLALFLA--SAVVFYIF-----FENSDSFWNFPVARNQ  362 (392)
Q Consensus       308 ~dg~i~iw~~~~~~~~~--~~~~-~~~~~~~~~~--~~~~~~~~-----~d~~i~~W~~~~~~~~  362 (392)
                      .  .|.++|....+...  .... ...+.+....  .+.++.+.     .++.|.+|+.. ++.+
T Consensus       244 ~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~  305 (328)
T 3dsm_A          244 N--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI  305 (328)
T ss_dssp             S--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred             c--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence            5  78888886544211  1111 1234444443  34444443     47889999987 6644

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.71  E-value=8.6e-15  Score=127.46  Aligned_cols=247  Identities=12%  Similarity=0.012  Sum_probs=164.2

Q ss_pred             EEEEcCCCCeEEEEe----------CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC--CCc
Q 016257           68 TIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGH  135 (392)
Q Consensus        68 ~~~~sp~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~  135 (392)
                      .++++|||+++++++          .++.|.+||..+.+....+....-...........+.|+|||++++++..  ++.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            399999999888775          36779999999887665553221011111234577999999999998864  689


Q ss_pred             EEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCC-CeeeEEEecCC---CcceE-EEEec-CCC
Q 016257          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTFLTRNS---DEKIE-LCRFS-KDG  209 (392)
Q Consensus       136 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~---~~~v~-~~~~~-~~~  209 (392)
                      |.++|+.+++.+.++.-..  . ...+....+.+++.+.||++.+.++.. ++.........   ..++. ...|. ++|
T Consensus       162 VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG  238 (386)
T 3sjl_D          162 VGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG  238 (386)
T ss_dssp             EEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             EEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence            9999999998876664321  1 122333445677778888888888875 55432221111   11221 23554 566


Q ss_pred             CcceEEEEEEeCCccEEEEEeCCCce--eeeeec----------ccCCCcEEEEECCCCCEEEEEeC----------CCc
Q 016257          210 TKPFLFCTVQRGDKALLAVYDISTWN--KIGHKR----------LLRKPASVLSISLDGKYLAMGSK----------DGD  267 (392)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~v~d~~~~~--~~~~~~----------~~~~~v~~~~~s~~~~~l~~~~~----------dg~  267 (392)
                      +.      +..+.++.+++.|+.+..  ....+.          ........++++++++.++....          .+.
T Consensus       239 ~~------~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~  312 (386)
T 3sjl_D          239 RL------VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF  312 (386)
T ss_dssp             EE------EEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEE
T ss_pred             cE------EEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCE
Confidence            53      334557899999997653  222221          01223445788999998888653          246


Q ss_pred             EEEEecCCceeeeeeeccccCcceEEEEEeeCCC-eEEEEe-CCCeEEEEEeecCccccce
Q 016257          268 ICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTAS-KEWGAMITKLTVPADWKEW  326 (392)
Q Consensus       268 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~  326 (392)
                      |.++|+++++.+..+..   ...+.++++++|++ +|+++. .++.|.++|....+..+.+
T Consensus       313 V~viD~~t~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i  370 (386)
T 3sjl_D          313 VVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV  370 (386)
T ss_dssp             EEEEETTTCCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEe
Confidence            99999999999988765   34788999999997 666654 5899999999866554433

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.71  E-value=2.2e-15  Score=144.62  Aligned_cols=240  Identities=13%  Similarity=0.029  Sum_probs=152.8

Q ss_pred             cCCCCeEEEEeCCC---eEEEEEEeCCc-cceeeccccCCCCCCCCCeEEEEecCCCCEEEEE-----eCCCcEEEEeCC
Q 016257           72 NPSGDDFVCSTTNG---GCKLFEVYGGA-TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-----GVDGHLRIMHWP  142 (392)
Q Consensus        72 sp~~~~l~~~~~d~---~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-----~~dg~i~i~d~~  142 (392)
                      +|+|++++....++   .-.+|...... ....+.........|...+..++|||||++|+.+     +.+..|++||++
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            47899888766544   35566655322 1222221111111234568899999999999843     345689999999


Q ss_pred             CCcee-ecccCCCCcEEEEEecCCCCeEEEEcCCCc-------------EEEEECCCCeee--EEEec-CCCcceEEEEe
Q 016257          143 SLRII-LDEPKAHKSVLDMDFSLDSEFLATTSTDGS-------------ARIWKTEDGVAW--TFLTR-NSDEKIELCRF  205 (392)
Q Consensus       143 ~~~~~-~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~-------------i~vwd~~~~~~~--~~~~~-~~~~~v~~~~~  205 (392)
                      +++.. ...... .....++|+|||+.|+.++.|..             |++|++.++...  ..+.. .+...+..+.|
T Consensus       156 tg~~~~~~~~~~-~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~  234 (695)
T 2bkl_A          156 SGEWSKVDVIEG-GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL  234 (695)
T ss_dssp             TCCBCSSCCBSC-CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE
T ss_pred             CCCCcCCcccCc-ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE
Confidence            98764 211111 11267899999999999888766             999999877632  22222 12236789999


Q ss_pred             cCCCCcceEEEEEEeC-CccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeC----CCcEEEEecCCcee--
Q 016257          206 SKDGTKPFLFCTVQRG-DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK----DGDICVVDVKKMEI--  278 (392)
Q Consensus       206 ~~~~~~~~~~~~~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~~~--  278 (392)
                      +|||+++++  ..... ....|.++|..+++. ..+..+...+....+ ++|. ++..+.    ++.|.+||+.+++.  
T Consensus       235 SpDG~~l~~--~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~  309 (695)
T 2bkl_A          235 SRDGKYLFV--YILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS  309 (695)
T ss_dssp             CTTSCCEEE--EEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG
T ss_pred             CCCCCEEEE--EEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC
Confidence            999987321  11111 234788887765543 334444455666666 5666 544443    57899999987653  


Q ss_pred             -eeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          279 -NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       279 -~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                       ...+ ..+....+..++|+ ++.++++...|+..++|.+..
T Consensus       310 ~~~l~-~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~  349 (695)
T 2bkl_A          310 WKEIV-PEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATL  349 (695)
T ss_dssp             CEEEE-CCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred             CeEEe-cCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC
Confidence             2222 22214568889998 778889999999999998874

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.71  E-value=3.2e-15  Score=130.42  Aligned_cols=239  Identities=8%  Similarity=-0.032  Sum_probs=165.2

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~  143 (392)
                      ..|.++.|+|++..++..+.++.++.|.   .+....+.       .+...+.+++|+++|++++++..++.|.+||.++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~   75 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEIS-------KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET   75 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEEE-------SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred             cccceeeecCCccceeEEeecccCcccc---cceeEEEe-------ccCccccCcEECCCCCEEEEECCCCEEEEEeCCC
Confidence            4577888999887777767778888882   22121221       1334678999999999878888889999999988


Q ss_pred             CceeecccCCCCcEEEEEecCCCCeEEEEcCC----CcEEEEECCCCeeeEEEe-cCCCcceEEEEecCCCCcceEEEEE
Q 016257          144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTD----GSARIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       144 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----~~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~  218 (392)
                      ++.......+...+.+++++|+++++++...+    +.|.+||.++++....+. ......+..++++|++..     .+
T Consensus        76 ~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l-----~v  150 (333)
T 2dg1_A           76 KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGF-----YF  150 (333)
T ss_dssp             CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCE-----EE
T ss_pred             CcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCE-----EE
Confidence            77654332445679999999999988877666    689999998776543332 122346889999999874     23


Q ss_pred             EeCC------ccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEE-eCCCcEEEEecCC-ceeeee-----eecc
Q 016257          219 QRGD------KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKK-MEINHW-----SKRL  285 (392)
Q Consensus       219 ~~~~------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~-~~~~~~-----~~~~  285 (392)
                      +...      .+.|..+|..+++... +......+..++|+|+|+.|+.+ +.++.|.+||+.+ ++....     ....
T Consensus       151 ~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~  229 (333)
T 2dg1_A          151 TDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYF  229 (333)
T ss_dssp             EECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEEC
T ss_pred             EeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEec
Confidence            3332      3677778776544432 22223457889999999866554 4578999999964 322211     1011


Q ss_pred             ccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       286 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      .....+..++++++|+++++...++.|.+|+..
T Consensus       230 ~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          230 TGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             CSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             CCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence            102367889999999988888888999999874

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.71  E-value=8.7e-15  Score=140.90  Aligned_cols=250  Identities=11%  Similarity=-0.009  Sum_probs=162.2

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCC
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~   85 (392)
                      .+..++|+||++.+.+....++.    ....|.+|+++  +...     ....+.+  ..+..++|+|||+.|+.++.++
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~----~~~~i~v~d~~--tg~~-----~~~~~~~--~~~~~~~wspDg~~l~~~~~~~  192 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGS----DWVTIKFMKVD--GAKE-----LPDVLER--VKFSCMAWTHDGKGMFYNAYPQ  192 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTC----SCEEEEEEETT--TTEE-----EEEEEEE--ECSCCEEECTTSSEEEEEECCC
T ss_pred             EEEEEEECCCCCEEEEEEcCCCC----ceEEEEEEECC--CCCC-----CcccccC--cccceEEEEeCCCEEEEEEECC
Confidence            57889999999764433321110    11245555543  3222     1112222  2367899999999999988776


Q ss_pred             e----------------EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC-----CCcEEEEeCCC-
Q 016257           86 G----------------CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHLRIMHWPS-  143 (392)
Q Consensus        86 ~----------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~i~d~~~-  143 (392)
                      .                |++|++.+++....+....   ..+...+..+.|+|||++|+..+.     +..|++||+.+ 
T Consensus       193 ~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~---~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~  269 (710)
T 2xdw_A          193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF---PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQE  269 (710)
T ss_dssp             CSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC---TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGS
T ss_pred             ccccccccccccCCCCEEEEEECCCCcccceEEecc---CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccc
Confidence            5                9999987765322222111   113445789999999999988764     56899999976 


Q ss_pred             -----Cc-eeecccCCCCcEEEEEecCCCCeEEEEcCC----CcEEEEECCCCe--eeEEEecCCC-cceEEEEecCCCC
Q 016257          144 -----LR-IILDEPKAHKSVLDMDFSLDSEFLATTSTD----GSARIWKTEDGV--AWTFLTRNSD-EKIELCRFSKDGT  210 (392)
Q Consensus       144 -----~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d----~~i~vwd~~~~~--~~~~~~~~~~-~~v~~~~~~~~~~  210 (392)
                           +. ....+..+...+.. .|+|+|+.|+..+..    +.|.+||+.++.  ....+..+.. ..+..++|++++.
T Consensus       270 ~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  348 (710)
T 2xdw_A          270 SNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF  348 (710)
T ss_dssp             SSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE
T ss_pred             ccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE
Confidence                 42 23344444444444 488999887766543    369999998764  2344544433 3688899986554


Q ss_pred             cceEEEEEEeCCcc--EEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEe----CCCcEEEEecCCce
Q 016257          211 KPFLFCTVQRGDKA--LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS----KDGDICVVDVKKME  277 (392)
Q Consensus       211 ~~~~~~~~~~~~d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~  277 (392)
                      .     +++...++  .|.+||+.+++.+..+..+...+..++++|+++.++...    ..+.|+.||+.+++
T Consensus       349 l-----v~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          349 L-----VLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             E-----EEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             E-----EEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            3     45555555  577788877776666766677788899999987766442    34789999998876

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.69  E-value=5.6e-13  Score=114.15  Aligned_cols=277  Identities=9%  Similarity=-0.019  Sum_probs=178.7

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d   84 (392)
                      ....++++.+++   .+.+....      ++.  +..+++. ...     ....+..+...+.++++.++++.+++...+
T Consensus        20 ~~p~~i~~d~~g---~l~v~~~~------~~~--v~~~~~~-~~~-----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~   82 (300)
T 2qc5_A           20 SGPYGITSSEDG---KVWFTQHK------ANK--ISSLDQS-GRI-----KEFEVPTPDAKVMCLIVSSLGDIWFTENGA   82 (300)
T ss_dssp             CCEEEEEECTTS---CEEEEETT------TTE--EEEECTT-SCE-----EEEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred             CCcceeeECCCC---CEEEEcCC------CCe--EEEECCC-Cce-----EEEECCCCCCcceeEEECCCCCEEEEecCC
Confidence            456778888876   33332222      222  4445544 222     112233345679999999999877776667


Q ss_pred             CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceee-cccCCCCcEEEEEec
Q 016257           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL-DEPKAHKSVLDMDFS  163 (392)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~i~~~  163 (392)
                      +.|..+|.. ++. ..+...     .....+..+++.++|+++++...++.|..++.. ++... ........+..++++
T Consensus        83 ~~v~~~d~~-g~~-~~~~~~-----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d  154 (300)
T 2qc5_A           83 NKIGKLSKK-GGF-TEYPLP-----QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG  154 (300)
T ss_dssp             TEEEEECTT-SCE-EEEECS-----STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC
T ss_pred             CeEEEECCC-CCe-EEecCC-----CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEEC
Confidence            889999866 332 111111     123568999999999887777667889999987 55432 222234578999999


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeee-ecc
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRL  242 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~  242 (392)
                      ++++++++...++.|..+|. +++............+..+++++++..     .++....+.|.+||. +++.... ...
T Consensus       155 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l-----~v~~~~~~~i~~~~~-~g~~~~~~~~~  227 (300)
T 2qc5_A          155 SDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGAL-----WFVEIMGNKIGRITT-TGEISEYDIPT  227 (300)
T ss_dssp             TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSE-----EEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred             CCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCE-----EEEccCCCEEEEEcC-CCcEEEEECCC
Confidence            99997777666788999998 555443222122335889999998863     345556678999998 4443322 223


Q ss_pred             cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEe
Q 016257          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (392)
Q Consensus       243 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  317 (392)
                      ....+.+++++++|++.++...++.|..||. +++......... ...+.+++++++|+++++.. . .|..++.
T Consensus       228 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          228 PNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTE-NAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             TTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCST-TCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             CCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCcc-CCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            3456889999999987666666788999998 454433221222 45688999999998665554 4 5555554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.69  E-value=1.8e-14  Score=121.62  Aligned_cols=203  Identities=8%  Similarity=-0.006  Sum_probs=143.9

Q ss_pred             CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC
Q 016257           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (392)
Q Consensus        62 h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~  141 (392)
                      +...+.+++++++|+.+++.. ++.|.+|+....... ...      ......+..++++++|+++++...++.|.+|+.
T Consensus        65 ~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~  136 (270)
T 1rwi_B           65 GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLP------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAA  136 (270)
T ss_dssp             SCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECC------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECT
T ss_pred             CcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eee------cCCcCCCcceEECCCCCEEEEECCCCEEEEEEC
Confidence            345788999999998655554 888999987654321 111      012246899999999987777777889999986


Q ss_pred             CCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeC
Q 016257          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (392)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (392)
                      .+.............+.+++++++++++++...++.|.+||.............. ..+..+++++++..     .++..
T Consensus       137 ~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~g~l-----~v~~~  210 (270)
T 1rwi_B          137 GSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI-TAPWGIAVDEAGTV-----YVTEH  210 (270)
T ss_dssp             TCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSC-CSEEEEEECTTCCE-----EEEET
T ss_pred             CCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCC-CCceEEEECCCCCE-----EEEEC
Confidence            6554433222333467889999999977777778899999987665433222222 46889999999853     45556


Q ss_pred             CccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCcee
Q 016257          222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI  278 (392)
Q Consensus       222 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  278 (392)
                      .++.|.+||................+.+++++++|+++++...++.|+++++...+.
T Consensus       211 ~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          211 NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            678899999876543322222235688999999999888888899999999876553

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.69  E-value=1e-13  Score=119.74  Aligned_cols=246  Identities=14%  Similarity=0.069  Sum_probs=165.3

Q ss_pred             CCCCCeeEEEEcCCCCeEEE-------EeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeC
Q 016257           61 ESEGDPMTIAVNPSGDDFVC-------STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGV  132 (392)
Q Consensus        61 ~h~~~v~~~~~sp~~~~l~~-------~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~  132 (392)
                      ..-..+.+++|+++++.+++       +..++.|.+|+..+++... +....  ...+...+.+++++++ ++++++ +.
T Consensus        15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~--~~~~~~~~~~i~~~~~~g~l~v~-~~   90 (314)
T 1pjx_A           15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPE--VNGYGGIPAGCQCDRDANQLFVA-DM   90 (314)
T ss_dssp             CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCE--ETTEECCEEEEEECSSSSEEEEE-ET
T ss_pred             ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecc--cCCCCCCCceEEEecCCCcEEEE-EC
Confidence            33456789999999987777       5778889999876665321 11100  0012356899999999 754444 44


Q ss_pred             CCcEEEEeCCCCceeec-ccC----CCCcEEEEEecCCCCeEEEEcCC---------------CcEEEEECCCCeeeEEE
Q 016257          133 DGHLRIMHWPSLRIILD-EPK----AHKSVLDMDFSLDSEFLATTSTD---------------GSARIWKTEDGVAWTFL  192 (392)
Q Consensus       133 dg~i~i~d~~~~~~~~~-~~~----~~~~i~~i~~~~~~~~l~~~~~d---------------~~i~vwd~~~~~~~~~~  192 (392)
                      .+.|.+||.+ ++.... ...    ....+.+++++++|+++++...+               +.|..+|.. ++.....
T Consensus        91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~  168 (314)
T 1pjx_A           91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD  168 (314)
T ss_dssp             TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred             CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence            5579999988 665432 211    11358899999999887776654               567777765 4443322


Q ss_pred             ecCCCcceEEEEec----CCCCcceEEEEEEeCCccEEEEEeCC-Ccee-----eeeecccC-CCcEEEEECCCCCEEEE
Q 016257          193 TRNSDEKIELCRFS----KDGTKPFLFCTVQRGDKALLAVYDIS-TWNK-----IGHKRLLR-KPASVLSISLDGKYLAM  261 (392)
Q Consensus       193 ~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~d~~i~v~d~~-~~~~-----~~~~~~~~-~~v~~~~~s~~~~~l~~  261 (392)
                      . .. .....++++    |+++.+    .++...++.|.+||.+ .++.     ...+..+. .....++++++|+++++
T Consensus       169 ~-~~-~~~~~i~~~~~~d~dg~~l----~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~  242 (314)
T 1pjx_A          169 T-AF-QFPNGIAVRHMNDGRPYQL----IVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA  242 (314)
T ss_dssp             E-EE-SSEEEEEEEECTTSCEEEE----EEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEE
T ss_pred             c-CC-CCcceEEEecccCCCCCEE----EEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEE
Confidence            2 21 246789999    998652    3455667899999976 3331     22222222 45788999999998888


Q ss_pred             EeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeE-EEEeCCCeEEEEEeecC
Q 016257          262 GSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV-LTASKEWGAMITKLTVP  320 (392)
Q Consensus       262 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~  320 (392)
                      ...++.|.+||.++++....+ ..+ ...+.+++|+++|+.| ++...++.|..+++...
T Consensus       243 ~~~~~~i~~~d~~~g~~~~~~-~~~-~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          243 NWGSSHIEVFGPDGGQPKMRI-RCP-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EETTTEEEEECTTCBSCSEEE-ECS-SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EcCCCEEEEEcCCCCcEeEEE-eCC-CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            777889999999877665544 234 5689999999999955 45556688999888643

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.68  E-value=1.8e-13  Score=126.75  Aligned_cols=232  Identities=11%  Similarity=0.054  Sum_probs=168.2

Q ss_pred             CCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC--CCceeecc
Q 016257           73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP--SLRIILDE  150 (392)
Q Consensus        73 p~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~  150 (392)
                      |.+..+++...++.|.++|..+++....+..        ...+..+.|+|||+++++++.|+.|.+||+.  +++.+.++
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~--------g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i  236 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT--------GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI  236 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC--------SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC--------CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE
Confidence            4444666777889999999988876555432        2356799999999999999999999999995  77766655


Q ss_pred             cCCCCcEEEEEec----CCCCeEEEEcC-CCcEEEEECCCCeeeEEEecCC----------CcceEEEEecCCCCcceEE
Q 016257          151 PKAHKSVLDMDFS----LDSEFLATTST-DGSARIWKTEDGVAWTFLTRNS----------DEKIELCRFSKDGTKPFLF  215 (392)
Q Consensus       151 ~~~~~~i~~i~~~----~~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~~~  215 (392)
                      ... .....++|+    |||+++++++. ++++.++|..+.+.+..+....          ...+..+..++++...   
T Consensus       237 ~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~---  312 (567)
T 1qks_A          237 KIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF---  312 (567)
T ss_dssp             ECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE---
T ss_pred             ecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEE---
Confidence            443 346789999    69998887764 5899999999999888775321          2257788888887642   


Q ss_pred             EEEEeCCccEEEEEeCCCceeeeeec-ccCCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCceeeeeeec----cccCc
Q 016257          216 CTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKR----LHLGT  289 (392)
Q Consensus       216 ~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~----~~~~~  289 (392)
                       ++.....+.|.++|....+...... ........+.|+|+|+++++++ .+++|.++|++++++...+..    .|...
T Consensus       313 -vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~  391 (567)
T 1qks_A          313 -IVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGR  391 (567)
T ss_dssp             -EEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTT
T ss_pred             -EEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcc
Confidence             4556788999999988654322211 2234567889999999987766 568899999999998776644    23112


Q ss_pred             ceEEEEEeeCCC-eEEEEe-CCCeEEEEEeec
Q 016257          290 SIALVEFCPTQR-VVLTAS-KEWGAMITKLTV  319 (392)
Q Consensus       290 ~i~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~  319 (392)
                      .+. + ++|++. .++++. .++.|.+++...
T Consensus       392 g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          392 GAN-F-VHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             CEE-E-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             cee-e-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence            222 2 578755 444543 468999999875

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.67  E-value=1.3e-13  Score=116.34  Aligned_cols=231  Identities=12%  Similarity=0.103  Sum_probs=160.6

Q ss_pred             eEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCC-CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccc
Q 016257           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD   98 (392)
Q Consensus        20 ~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~   98 (392)
                      .+++.++.      ++.|.+|+.+        +....-.+..+. ..+.++.++|+|++++  +.++.|+.||. +++..
T Consensus         6 ~~lv~~~~------~~~v~~~d~~--------tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~   68 (276)
T 3no2_A            6 HLLVGGSG------WNKIAIINKD--------TKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGREL   68 (276)
T ss_dssp             EEEEECTT------CSEEEEEETT--------TTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEE
T ss_pred             cEEEeeCC------CCEEEEEECC--------CCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEE
Confidence            35665555      4556666543        223334455554 4789999999999888  34677999998 67655


Q ss_pred             eeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCCceeeccc------CCCCcEEEEEecCCCCeEEE
Q 016257           99 INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDEP------KAHKSVLDMDFSLDSEFLAT  171 (392)
Q Consensus        99 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~------~~~~~i~~i~~~~~~~~l~~  171 (392)
                      .++...      ....+.++.+.++|+.+++.+. ++.+..+|. +++.+.++.      .++.....+++.++|+++++
T Consensus        69 W~~~~~------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~  141 (276)
T 3no2_A           69 WNIAAP------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVP  141 (276)
T ss_dssp             EEEECC------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEE
T ss_pred             EEEcCC------CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEE
Confidence            554431      1236788999999999999887 777877775 566554432      22234556678999999999


Q ss_pred             EcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC------C
Q 016257          172 TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR------K  245 (392)
Q Consensus       172 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~------~  245 (392)
                      ...++.|..||.+ ++.+.++...  ..+.++...+++..     ++++..++.|..+|..+++.+-++....      .
T Consensus       142 ~~~~~~v~~~d~~-G~~~w~~~~~--~~~~~~~~~~~g~~-----~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~  213 (276)
T 3no2_A          142 LFATSEVREIAPN-GQLLNSVKLS--GTPFSSAFLDNGDC-----LVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLF  213 (276)
T ss_dssp             ETTTTEEEEECTT-SCEEEEEECS--SCCCEEEECTTSCE-----EEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCS
T ss_pred             ecCCCEEEEECCC-CCEEEEEECC--CCccceeEcCCCCE-----EEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccc
Confidence            9999999999997 9888888754  24667888899885     5667777899999999998876665322      2


Q ss_pred             CcEEEEECCCCCEEEEEeCC--------CcEEEEec-CCceeeeee
Q 016257          246 PASVLSISLDGKYLAMGSKD--------GDICVVDV-KKMEINHWS  282 (392)
Q Consensus       246 ~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~  282 (392)
                      .+..++..++|.++++....        +..+++++ .+++.+-.+
T Consensus       214 ~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~  259 (276)
T 3no2_A          214 FVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQL  259 (276)
T ss_dssp             EEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEE
T ss_pred             ccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEe
Confidence            26788888999888876421        23355555 355554443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.66  E-value=1e-12  Score=112.45  Aligned_cols=241  Identities=9%  Similarity=0.029  Sum_probs=169.3

Q ss_pred             eCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 016257           60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (392)
Q Consensus        60 ~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~  139 (392)
                      ......+.++.+.++|+..++...++.|.+|+.. ++.. .....     .....+..+++.+++++.++...++.|..+
T Consensus        16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~~-----~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~   88 (300)
T 2qc5_A           16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFEVP-----TPDAKVMCLIVSSLGDIWFTENGANKIGKL   88 (300)
T ss_dssp             SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECS-----STTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEECC-----CCCCcceeEEECCCCCEEEEecCCCeEEEE
Confidence            3345688999999999877776678889999876 3322 11111     123578999999999877776667889999


Q ss_pred             eCCCCceee-cccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257          140 HWPSLRIIL-DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       140 d~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (392)
                      |.. ++... ........+.+++++++++++++...++.|..+|.. ++............+..+++.+++..     .+
T Consensus        89 d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l-----~v  161 (300)
T 2qc5_A           89 SKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNAL-----WF  161 (300)
T ss_dssp             CTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSE-----EE
T ss_pred             CCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCE-----EE
Confidence            987 55432 222233578999999999888877778899999987 55442222222346889999999883     35


Q ss_pred             EeCCccEEEEEeCCCceeeee-ecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEe
Q 016257          219 QRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (392)
Q Consensus       219 ~~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  297 (392)
                      +...++.|..+|. +++.... .......+..++++++|++.++....+.|.+||. +++........+ ...+.+++++
T Consensus       162 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~d  238 (300)
T 2qc5_A          162 TENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTP-NARPHAITAG  238 (300)
T ss_dssp             EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEEC
T ss_pred             EecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCC-CCCceEEEEC
Confidence            5556788999998 4444321 1223456889999999987777666778999998 555443322233 5678999999


Q ss_pred             eCCCeEEEEeCCCeEEEEEe
Q 016257          298 PTQRVVLTASKEWGAMITKL  317 (392)
Q Consensus       298 ~~~~~l~~~~~dg~i~iw~~  317 (392)
                      ++|+++++...++.|..++.
T Consensus       239 ~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          239 KNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             STTCEEEEETTTTEEEEECT
T ss_pred             CCCCEEEeccCCCeEEEECC
Confidence            99987777666789998886

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.65  E-value=3.3e-13  Score=120.64  Aligned_cols=239  Identities=7%  Similarity=-0.070  Sum_probs=164.2

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC--cEEEEeC
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG--HLRIMHW  141 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~i~d~  141 (392)
                      ..+..++|+|+++++++...++.|++||..++........        ..... ++|+++++.|+++..++  .|.+++.
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--------~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~  201 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG--------FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMK  201 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET--------CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEG
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc--------CCCCc-eeEecCCCcEEEEecCCCceEEEEEc
Confidence            4688999999998777777778999999877654322211        11234 99999999999888766  7888887


Q ss_pred             CCCceeecc---cC-CCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEE----EecCCCcceE-EEEecCCCCcc
Q 016257          142 PSLRIILDE---PK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF----LTRNSDEKIE-LCRFSKDGTKP  212 (392)
Q Consensus       142 ~~~~~~~~~---~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~----~~~~~~~~v~-~~~~~~~~~~~  212 (392)
                      ..+......   .. ....+.+++++|++..|+.+..++.|+.||..++.....    .......... .++|+|++..+
T Consensus       202 ~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l  281 (409)
T 3hrp_A          202 ASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF  281 (409)
T ss_dssp             GGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred             CCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence            665442222   12 334678899999655666677788999999987653222    1111111113 99999965542


Q ss_pred             eEEEEEEeCCccEEEEEeCCCceeeeeeccc---------------CCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCc
Q 016257          213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLL---------------RKPASVLSISLDGKYLAMGS-KDGDICVVDVKKM  276 (392)
Q Consensus       213 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~  276 (392)
                          .++....+.|+.|+....  ...+...               -.....++++|+|+++++-. .++.|+.|++.++
T Consensus       282 ----yv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G  355 (409)
T 3hrp_A          282 ----YMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG  355 (409)
T ss_dssp             ----EEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred             ----EEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence                456677889999998753  2122211               13477899999999777777 7899999998888


Q ss_pred             eeeeeeeccc------------cCcceEEEEEeeCCCeEEEEeCCCeEEEEEe
Q 016257          277 EINHWSKRLH------------LGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (392)
Q Consensus       277 ~~~~~~~~~~------------~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  317 (392)
                      +.........            .-.....++++++|.++++-..++.|+.+++
T Consensus       356 ~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          356 YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            7654432100            0135889999999888888888888888765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.64  E-value=5.9e-14  Score=135.70  Aligned_cols=240  Identities=13%  Similarity=0.058  Sum_probs=152.7

Q ss_pred             cCCCCeEEEEeCCCe---EEEEEEeCC----ccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC-----CcEEEE
Q 016257           72 NPSGDDFVCSTTNGG---CKLFEVYGG----ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIM  139 (392)
Q Consensus        72 sp~~~~l~~~~~d~~---i~iw~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~  139 (392)
                      +|+|++++....++.   -.+|.....    .....+.........+...+..++|||||++|+.++.+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            489998887665443   567776542    22222211111111122367899999999999887643     359999


Q ss_pred             eCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCc--------------EEEEECCCCeee--EEEecCC-CcceEE
Q 016257          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGS--------------ARIWKTEDGVAW--TFLTRNS-DEKIEL  202 (392)
Q Consensus       140 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~--------------i~vwd~~~~~~~--~~~~~~~-~~~v~~  202 (392)
                      |+++++.+.... ....+..++|+|| +.|+.++.++.              |++|++.++...  ..+.... ...+..
T Consensus       195 dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~  272 (741)
T 1yr2_A          195 GVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG  272 (741)
T ss_dssp             ETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             ECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence            999988754311 1112357899999 98888876554              889998776532  2222221 124789


Q ss_pred             EEecCCCCcceEEEEEEeC--CccEEEEEeCCCc--eeeeeecccCCCcEEEEECCCCCEEEEEeCC----CcEEEEecC
Q 016257          203 CRFSKDGTKPFLFCTVQRG--DKALLAVYDISTW--NKIGHKRLLRKPASVLSISLDGKYLAMGSKD----GDICVVDVK  274 (392)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~--~d~~i~v~d~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~  274 (392)
                      +.|+|||+++++  .....  ....|.+||+.++  +....+..+....... ++|+|+.|+..+.+    +.|.+||+.
T Consensus       273 ~~~SpDG~~l~~--~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~  349 (741)
T 1yr2_A          273 ASVSSDGRWVVI--TSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLS  349 (741)
T ss_dssp             EEECTTSCEEEE--EEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECS
T ss_pred             EEECCCCCEEEE--EEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC
Confidence            999999997321  11111  2458999999876  3133444444444444 34899988887754    459999998


Q ss_pred             Cc--eeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          275 KM--EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       275 ~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      ++  +....+ ..+ ...+..++|+ ++.++++...|+..+||.++.
T Consensus       350 ~~~~~~~~l~-~~~-~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~  393 (741)
T 1yr2_A          350 GSTPRFDTVV-PES-KDNLESVGIA-GNRLFASYIHDAKSQVLAFDL  393 (741)
T ss_dssp             SSSCEEEEEE-CCC-SSEEEEEEEE-BTEEEEEEEETTEEEEEEEET
T ss_pred             CCccccEEEe-cCC-CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC
Confidence            75  333333 344 5567788887 667888899999999998773

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.64  E-value=6.8e-13  Score=113.64  Aligned_cols=231  Identities=9%  Similarity=0.023  Sum_probs=154.5

Q ss_pred             eeCCCCCeeEEEEcCCCC-eEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEE
Q 016257           59 FDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (392)
Q Consensus        59 ~~~h~~~v~~~~~sp~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  137 (392)
                      +..+..-..+..|+|++. ++++...++.|+.||..+++.. ..        .....+.+++++++|+++++ . ++.|.
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~--------~~~~~~~~i~~~~dG~l~v~-~-~~~l~   76 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV--------TMDAPVSSVALRQSGGYVAT-I-GTKFC   76 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE--------ECSSCEEEEEEBTTSSEEEE-E-TTEEE
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE--------eCCCceEEEEECCCCCEEEE-E-CCeEE
Confidence            334445667899999655 4555566789999998766531 11        12357899999999995554 4 56799


Q ss_pred             EEeCCCCceeecccC----CCCcEEEEEecCCCCeEEEEcCC---------CcEEEEECCC-CeeeEEEecCCCcceEEE
Q 016257          138 IMHWPSLRIILDEPK----AHKSVLDMDFSLDSEFLATTSTD---------GSARIWKTED-GVAWTFLTRNSDEKIELC  203 (392)
Q Consensus       138 i~d~~~~~~~~~~~~----~~~~i~~i~~~~~~~~l~~~~~d---------~~i~vwd~~~-~~~~~~~~~~~~~~v~~~  203 (392)
                      +||.++++.......    ....+.+++++|+|+++++...+         ..-.+|.+.. ++... +.... .....+
T Consensus        77 ~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~-~~pngi  154 (297)
T 3g4e_A           77 ALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQV-DISNGL  154 (297)
T ss_dssp             EEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEE-SBEEEE
T ss_pred             EEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-Eeecc-ccccce
Confidence            999987764322111    12358899999999976654321         2335555543 33322 22222 246889


Q ss_pred             EecCCCCcceEEEEEEeCCccEEEEEeC--CCcee-----eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCc
Q 016257          204 RFSKDGTKPFLFCTVQRGDKALLAVYDI--STWNK-----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (392)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~d~~i~v~d~--~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  276 (392)
                      +|+|+++.+    .++.+.++.|.+||+  .++..     ...+.........++++++|++.++...++.|..||.+++
T Consensus       155 ~~spdg~~l----yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG  230 (297)
T 3g4e_A          155 DWSLDHKIF----YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG  230 (297)
T ss_dssp             EECTTSCEE----EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred             EEcCCCCEE----EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence            999999863    355666789999987  34432     1222223356788999999988887777888999999988


Q ss_pred             eeeeeeeccccCcceEEEEEe-eCCCeEEEEeC
Q 016257          277 EINHWSKRLHLGTSIALVEFC-PTQRVVLTASK  308 (392)
Q Consensus       277 ~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~  308 (392)
                      +.+..+. .+ ...+++++|. |+++.|+.++.
T Consensus       231 ~~~~~i~-~p-~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          231 KRLQTVK-LP-VDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             CEEEEEE-CS-SSBEEEEEEESGGGCEEEEEEB
T ss_pred             eEEEEEE-CC-CCCceEEEEeCCCCCEEEEEcC
Confidence            8877663 33 5679999998 88886665553

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.64  E-value=7.2e-14  Score=123.88  Aligned_cols=244  Identities=9%  Similarity=-0.019  Sum_probs=163.3

Q ss_pred             EEEEcCCCCeEEEEe----------CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC--CCc
Q 016257           68 TIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGH  135 (392)
Q Consensus        68 ~~~~sp~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~  135 (392)
                      .+.++||+++|+++.          .++.|.++|..+.+....+................+.|+|||++++++..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            899999999888876          36789999999887665553220111111234567899999999999874  578


Q ss_pred             EEEEeCCCCceeecccCCCCcEEEEEecCCC-CeEEEEcCCCcEEEEECCCCeeeEE----EecCCCcceEEEEecCCCC
Q 016257          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTF----LTRNSDEKIELCRFSKDGT  210 (392)
Q Consensus       136 i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~----~~~~~~~~v~~~~~~~~~~  210 (392)
                      |.+.|+.+++.+..+.-...    ....|++ +.+++.+.||++.+.+..+++....    +..........+.+.+++.
T Consensus       202 VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~  277 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG  277 (426)
T ss_dssp             EEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC
T ss_pred             EEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC
Confidence            99999999988766543221    2233433 4556666778887777755554422    1111111112356788887


Q ss_pred             cceEEEEEEeCCccEEEEEeCCCceee--eeecc----------cCCCcEEEEECCCCCEEEEEeC----------CCcE
Q 016257          211 KPFLFCTVQRGDKALLAVYDISTWNKI--GHKRL----------LRKPASVLSISLDGKYLAMGSK----------DGDI  268 (392)
Q Consensus       211 ~~~~~~~~~~~~d~~i~v~d~~~~~~~--~~~~~----------~~~~v~~~~~s~~~~~l~~~~~----------dg~i  268 (392)
                      .     ++.....+.+.+.|+......  ..+..          .......++++|+++.+++...          ++.|
T Consensus       278 ~-----~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~V  352 (426)
T 3c75_H          278 R-----LVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFV  352 (426)
T ss_dssp             E-----EEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEE
T ss_pred             E-----EEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEE
Confidence            6     334445789999998654321  11110          0112223689999988777643          3579


Q ss_pred             EEEecCCceeeeeeeccccCcceEEEEEeeCCC-eEEEEe-CCCeEEEEEeecCccc
Q 016257          269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTAS-KEWGAMITKLTVPADW  323 (392)
Q Consensus       269 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~  323 (392)
                      .++|..+.+.+..+..   ......++|+|||+ ++++.. .++.|.++|+...+..
T Consensus       353 sVID~~T~kvv~~I~v---g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv  406 (426)
T 3c75_H          353 VVLNAETGERINKIEL---GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL  406 (426)
T ss_dssp             EEEETTTCCEEEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             EEEECCCCeEEEEEEC---CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence            9999999999988754   34689999999999 888888 5899999999866543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.60  E-value=1.2e-13  Score=132.29  Aligned_cols=242  Identities=9%  Similarity=-0.007  Sum_probs=158.5

Q ss_pred             CCCCCeeEEEEcCCCCeEEEEe-----CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCc
Q 016257           61 ESEGDPMTIAVNPSGDDFVCST-----TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (392)
Q Consensus        61 ~h~~~v~~~~~sp~~~~l~~~~-----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  135 (392)
                      +|...+..++|||||++||.+.     ....|++||+.+++........        .....++|+ |++.|+.++.+..
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--------~k~~~~~Ws-Dg~~l~y~~~~~~  196 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--------VKFSGISWL-GNEGFFYSSYDKP  196 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--------EESCCCEEE-TTTEEEEEESSCC
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--------ceeccEEEe-CCCEEEEEEecCc
Confidence            3556788999999999988543     2357999999988743321110        012467899 9999998887743


Q ss_pred             -------------EEEEeCCCCce----eecccC-CCCcEEEEEecCCCCeEEEEcC----CCcEEEEECCCCe-eeEEE
Q 016257          136 -------------LRIMHWPSLRI----ILDEPK-AHKSVLDMDFSLDSEFLATTST----DGSARIWKTEDGV-AWTFL  192 (392)
Q Consensus       136 -------------i~i~d~~~~~~----~~~~~~-~~~~i~~i~~~~~~~~l~~~~~----d~~i~vwd~~~~~-~~~~~  192 (392)
                                   |++|++.+...    +..... +.....++.|+|||++|+....    +..|+++|+.++. ....+
T Consensus       197 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l  276 (693)
T 3iuj_A          197 DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV  276 (693)
T ss_dssp             C-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred             ccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence                         99999877642    222222 2335778999999998765432    2479999997763 34455


Q ss_pred             ecCCCcceEEEEecCCCCcceEEEEEEeC--CccEEEEEeCCCcee--eeeecccCCCcEEEEECCCCCEEEEEeCCC--
Q 016257          193 TRNSDEKIELCRFSKDGTKPFLFCTVQRG--DKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDG--  266 (392)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--  266 (392)
                      ..+.. ..... +++++..++   +.+..  ..+.|..+|+.++..  ...+..+...+.  .|++++++|+....++  
T Consensus       277 ~~~~~-~~~~~-~~~~g~~l~---~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~  349 (693)
T 3iuj_A          277 QGDLD-ADVSL-VDNKGSTLY---LLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDAT  349 (693)
T ss_dssp             ECSSS-SCEEE-EEEETTEEE---EEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTE
T ss_pred             eCCCC-ceEEE-EeccCCEEE---EEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCe
Confidence            44433 33343 677777632   22222  247899999987654  234444554554  8999998887766543  


Q ss_pred             -cEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC----CeEEEEEeecC
Q 016257          267 -DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE----WGAMITKLTVP  320 (392)
Q Consensus       267 -~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~iw~~~~~  320 (392)
                       .|++||+.++.... +.... .+.+..+.++++++.|+....+    +.+..|++...
T Consensus       350 ~~l~~~d~~g~~~~~-l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g  406 (693)
T 3iuj_A          350 ARVEQFDYEGKRVRE-VALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG  406 (693)
T ss_dssp             EEEEEECTTSCEEEE-ECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred             eEEEEEECCCCeeEE-eecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence             68999988655433 32223 4567888888888866655444    78888887644

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.59  E-value=4.8e-12  Score=111.52  Aligned_cols=274  Identities=8%  Similarity=-0.052  Sum_probs=173.7

Q ss_pred             EcCCCCeEEEEeC--CC---eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe----------CCCc
Q 016257           71 VNPSGDDFVCSTT--NG---GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG----------VDGH  135 (392)
Q Consensus        71 ~sp~~~~l~~~~~--d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~  135 (392)
                      ..|+++++++...  ..   .|.++|..+++....+..       ...+  .++++|||++++++.          .++.
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~-------g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~   98 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG-------GFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDY   98 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecC-------CCCC--CeEECCCCCEEEEEeccccccccCCCCCe
Confidence            3467777776653  22   789999988775433322       1122  899999999999886          3678


Q ss_pred             EEEEeCCCCceeecccCC-------CCcEEEEEecCCCCeEEEEcC--CCcEEEEECCCCeeeEE-EecCCCcceEEEEe
Q 016257          136 LRIMHWPSLRIILDEPKA-------HKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTF-LTRNSDEKIELCRF  205 (392)
Q Consensus       136 i~i~d~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~l~~~~~--d~~i~vwd~~~~~~~~~-~~~~~~~~v~~~~~  205 (392)
                      |.+||..+.+.+..+.-.       ......+.|+|||++|++++.  ++.|.++| .+++.+.. +...     .++.+
T Consensus        99 v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-----~~~~~  172 (373)
T 2mad_H           99 VEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-----TCYHI  172 (373)
T ss_pred             EEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-----ceEEE
Confidence            999999988776544322       123458899999999998874  47899999 99988777 5432     12556


Q ss_pred             cCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec-----ccCCCc-EEEEECCCCCEEEEEeCCCcEEEEecCCcee-
Q 016257          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-----LLRKPA-SVLSISLDGKYLAMGSKDGDICVVDVKKMEI-  278 (392)
Q Consensus       206 ~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-----~~~~~v-~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-  278 (392)
                      .|++...    +++.+.|+.+.++|. +++......     ....++ ....+.+++..++..+..+.+.+.|+.+... 
T Consensus       173 ~~~~~~~----~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~  247 (373)
T 2mad_H          173 HPGAPST----FYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT  247 (373)
T ss_pred             EeCCCce----EEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcce
Confidence            6777653    345667899999999 776653221     111221 2345666665555555778999999976532 


Q ss_pred             -eeeeec--------cccCcceEEEEEeeCCCeEEEEeC----------CCeEEEEEeecCccccceeeeeeeeeeeee-
Q 016257          279 -NHWSKR--------LHLGTSIALVEFCPTQRVVLTASK----------EWGAMITKLTVPADWKEWQIYSLLLALFLA-  338 (392)
Q Consensus       279 -~~~~~~--------~~~~~~i~~~~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-  338 (392)
                       ...+..        .........++++|+++.++.+..          ++.|.+.|+...+....+.+...+.+.... 
T Consensus       248 v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~  327 (373)
T 2mad_H          248 NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQ  327 (373)
T ss_pred             EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECC
Confidence             221110        000223445789999987777653          357888888766544333322223333222 


Q ss_pred             -ce-EEEEee-ecceeeeecccccccccC
Q 016257          339 -SA-VVFYIF-FENSDSFWNFPVARNQHG  364 (392)
Q Consensus       339 -~~-~~~~~~-~d~~i~~W~~~~~~~~~~  364 (392)
                       .. .++++. .++.|.++|+.+++.+..
T Consensus       328 Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          328 DGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             CCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence             23 344444 489999999998886644

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.58  E-value=3.4e-12  Score=111.83  Aligned_cols=289  Identities=10%  Similarity=0.065  Sum_probs=172.1

Q ss_pred             cceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEE-----------c--CCCCeEEE-Ee
Q 016257           17 ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV-----------N--PSGDDFVC-ST   82 (392)
Q Consensus        17 ~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-----------s--p~~~~l~~-~~   82 (392)
                      +.+..+.+............+.+.+++++...+.+ -.....+..-.+....+.|           +  +++++|+. +.
T Consensus        25 e~~~y~~~~~~~~~~~~~d~la~vDvdp~s~ty~~-vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l  103 (462)
T 2ece_A           25 EDLAYVACLYTGTGINRADFIAVVDVNPKSETYSK-IVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGL  103 (462)
T ss_dssp             CSEEEEEEECTTTTCCCCCEEEEEECCTTSTTTTS-EEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBT
T ss_pred             ceEEEEEeeccCCCCCCCCeEEEEECCCCCCCcce-EEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccC
Confidence            33444544443222234666777777765443321 1111122221123333334           6  77887665 55


Q ss_pred             CCCeEEEEEEeCCcc----ceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC------CcEEEEeCCCCceeecccC
Q 016257           83 TNGGCKLFEVYGGAT----DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHWPSLRIILDEPK  152 (392)
Q Consensus        83 ~d~~i~iw~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~  152 (392)
                      .+++|+|+|+.+...    ...+...+...-........+..+|+| .++++..+      +.|.++|.++.+.+.+...
T Consensus       104 ~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~  182 (462)
T 2ece_A          104 RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEI  182 (462)
T ss_dssp             TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCS
T ss_pred             CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEcc
Confidence            778899999975522    111100000000011234667888999 66665544      7899999999998877753


Q ss_pred             CCC---cEEEEEecCCCCeEEEEc-------------------CCCcEEEEECCCCeeeEEEecC-CCcceEEEEe--cC
Q 016257          153 AHK---SVLDMDFSLDSEFLATTS-------------------TDGSARIWKTEDGVAWTFLTRN-SDEKIELCRF--SK  207 (392)
Q Consensus       153 ~~~---~i~~i~~~~~~~~l~~~~-------------------~d~~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~--~~  207 (392)
                      ...   --+.+-|+|+++.++++.                   .+.+|.+||+.+++.+.++... .......+.|  +|
T Consensus       183 ~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~P  262 (462)
T 2ece_A          183 DRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDP  262 (462)
T ss_dssp             BCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSST
T ss_pred             CCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECC
Confidence            322   245688899999888884                   3688999999999888888764 2223455655  99


Q ss_pred             CCCcceEEEEEE-eCCccEEEEEeCCCcee--eeee--cc----------------cCCCcEEEEECCCCCEEEEEeC-C
Q 016257          208 DGTKPFLFCTVQ-RGDKALLAVYDISTWNK--IGHK--RL----------------LRKPASVLSISLDGKYLAMGSK-D  265 (392)
Q Consensus       208 ~~~~~~~~~~~~-~~~d~~i~v~d~~~~~~--~~~~--~~----------------~~~~v~~~~~s~~~~~l~~~~~-d  265 (392)
                      ++++.|+.+-++ ...+++|.+|....++.  .+.+  ..                .......+.+||||++|+++.. .
T Consensus       263 dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~  342 (462)
T 2ece_A          263 TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI  342 (462)
T ss_dssp             TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT
T ss_pred             CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC
Confidence            999744221100 01456777665443221  1110  00                0245678999999999998875 5


Q ss_pred             CcEEEEecCC---ceeeeeeeccc------------cCcceEEEEEeeCCCeEEEEe
Q 016257          266 GDICVVDVKK---MEINHWSKRLH------------LGTSIALVEFCPTQRVVLTAS  307 (392)
Q Consensus       266 g~i~iwd~~~---~~~~~~~~~~~------------~~~~i~~~~~s~~~~~l~~~~  307 (392)
                      +.|.+||+..   .+++..+..+-            ..+....+.++|||++|+++.
T Consensus       343 d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          343 GEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            7899999863   34444443320            001368899999999999888

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.56  E-value=1.3e-11  Score=107.00  Aligned_cols=224  Identities=13%  Similarity=0.009  Sum_probs=147.3

Q ss_pred             CCeeEEEEcCCCC-eEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257           64 GDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (392)
Q Consensus        64 ~~v~~~~~sp~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  142 (392)
                      .-..++.|+|++. .+++...++.|..|+..+++.. ...        ....+.+++|+++|+++++. .+ .|.+||.+
T Consensus        49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~--------~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~  117 (326)
T 2ghs_A           49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA--------LPFMGSALAKISDSKQLIAS-DD-GLFLRDTA  117 (326)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE--------CSSCEEEEEEEETTEEEEEE-TT-EEEEEETT
T ss_pred             CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE--------CCCcceEEEEeCCCeEEEEE-CC-CEEEEECC
Confidence            3457889999755 4555556788999998765432 111        12478999999999876654 44 49999998


Q ss_pred             CCceeecccC---C-CCcEEEEEecCCCCeEEEEcC------CCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcc
Q 016257          143 SLRIILDEPK---A-HKSVLDMDFSLDSEFLATTST------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (392)
Q Consensus       143 ~~~~~~~~~~---~-~~~i~~i~~~~~~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (392)
                      +++.......   . ...+.++.++|+|+++++...      .+.|..++  +++... +... ......++|+|+++.+
T Consensus       118 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~-~~~~~~i~~s~dg~~l  193 (326)
T 2ghs_A          118 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFAD-ISIPNSICFSPDGTTG  193 (326)
T ss_dssp             TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEE-ESSEEEEEECTTSCEE
T ss_pred             CCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCC-CcccCCeEEcCCCCEE
Confidence            8775322111   1 236889999999987665432      24455555  444332 2222 1246789999999863


Q ss_pred             eEEEEEEeCCccEEEEEeCC--Cc-ee-----eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec
Q 016257          213 FLFCTVQRGDKALLAVYDIS--TW-NK-----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR  284 (392)
Q Consensus       213 ~~~~~~~~~~d~~i~v~d~~--~~-~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  284 (392)
                          .++...++.|.+||+.  ++ +.     ...+.........++++++|.+.++...++.|.+||. +++....+. 
T Consensus       194 ----yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~-  267 (326)
T 2ghs_A          194 ----YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE-  267 (326)
T ss_dssp             ----EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE-
T ss_pred             ----EEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE-
Confidence                2455667899999986  54 21     1122222345678999999988777766788999998 566555442 


Q ss_pred             cccCcceEEEEEe-eCCCeEEEEeCC
Q 016257          285 LHLGTSIALVEFC-PTQRVVLTASKE  309 (392)
Q Consensus       285 ~~~~~~i~~~~~s-~~~~~l~~~~~d  309 (392)
                      .+ ...+++++|+ ++++.|+.++..
T Consensus       268 ~~-~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          268 VP-GKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             CS-CSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CC-CCCcEEEEEecCCCCEEEEEecC
Confidence            33 5579999998 888766555433

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.55  E-value=1.6e-13  Score=120.04  Aligned_cols=175  Identities=15%  Similarity=0.067  Sum_probs=131.4

Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc----------eeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEE
Q 016257          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR----------IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK  182 (392)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~----------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd  182 (392)
                      .+++.+++++...++++|+.++ +.+|++++.+          .......... |+.++|  |+++|+++ .++.|++||
T Consensus        38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            3689999999999999999875 6669865332          0101122344 999999  89999998 789999999


Q ss_pred             CCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEE
Q 016257          183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG  262 (392)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  262 (392)
                      +++.........+ ...+..+.+.+..       ++.+..||.|.+||+..+....    +...|++++|||+|  ++.|
T Consensus       113 v~sl~~~~~~~~~-~~~v~~i~~~~p~-------~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg  178 (388)
T 1xip_A          113 LEELSEFRTVTSF-EKPVFQLKNVNNT-------LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVL  178 (388)
T ss_dssp             SSSTTCEEEEEEC-SSCEEEEEECSSE-------EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEE
T ss_pred             chhhhccCcccee-ecceeeEEecCCC-------EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEE
Confidence            9876655444443 3457777766542       4667889999999999776543    34589999999999  6789


Q ss_pred             eCCCcEEEEecCCcee--eeeee-----c---cccCcceEEEEEeeCCCeEEEEe
Q 016257          263 SKDGDICVVDVKKMEI--NHWSK-----R---LHLGTSIALVEFCPTQRVVLTAS  307 (392)
Q Consensus       263 ~~dg~i~iwd~~~~~~--~~~~~-----~---~~~~~~i~~~~~s~~~~~l~~~~  307 (392)
                      ..||++++|+...++.  ...+.     .   +| ...|.++.|.+++.++++-+
T Consensus       179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~-~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVE-EYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTT-TSEEEEEEESSSSEEEEEEE
T ss_pred             EcCCcEEEEcCCCccccccceecCCcccccccCC-CeeEEEEEEecCCeEEEEEc
Confidence            9999999999888775  33331     1   35 67899999999999887643

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.54  E-value=1.5e-13  Score=120.12  Aligned_cols=177  Identities=10%  Similarity=0.010  Sum_probs=132.6

Q ss_pred             CeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCcccee-----eccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 016257           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN-----LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (392)
Q Consensus        65 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~  139 (392)
                      +++.+++++...++++|+.++ +.+|+++..+....     +..  .....+.. |+.++|  |+++|+++ .++.|++|
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~--~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTF--KWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCC--SEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccc--eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence            689999999999999999987 77799765431000     100  00112445 999999  89999998 78999999


Q ss_pred             eCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEE
Q 016257          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (392)
Q Consensus       140 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (392)
                      |+.+.........+...+.++.+.+..  +++++.||.+.+||+.++.... +    ...|++++|+|+|.       +.
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~-~----~~~Vs~v~WSpkG~-------~v  177 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ-L----AQNVTSFDVTNSQL-------AV  177 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE-E----EESEEEEEECSSEE-------EE
T ss_pred             EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc-c----cCCceEEEEcCCce-------EE
Confidence            998766554455555678888776543  8888999999999999776643 2    23699999999992       55


Q ss_pred             eCCccEEEEEeCCCcee--eeee------c---ccCCCcEEEEECCCCCEEEEE
Q 016257          220 RGDKALLAVYDISTWNK--IGHK------R---LLRKPASVLSISLDGKYLAMG  262 (392)
Q Consensus       220 ~~~d~~i~v~d~~~~~~--~~~~------~---~~~~~v~~~~~s~~~~~l~~~  262 (392)
                      +..||.+++|+....+.  ...+      .   .+...|.++.|.+++.++++-
T Consensus       178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            77789999998887664  3334      2   356889999999999988873

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.54  E-value=4.1e-12  Score=109.59  Aligned_cols=203  Identities=10%  Similarity=0.088  Sum_probs=133.8

Q ss_pred             CCCCeeEEEEcCC-CCeEEEEeCCCeEEEEEEeCCccceee-ccccCCCCCCCCCeEEEEecCCCCEEEEEeCC------
Q 016257           62 SEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINL-LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------  133 (392)
Q Consensus        62 h~~~v~~~~~sp~-~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------  133 (392)
                      +...+.+++++++ ++++++. ..+.|.+||.. ++.. .+ .. .. .......+.++++.++|+++++...+      
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~-~~~~~-~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~  143 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFE-EIAKK-DS-EGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD  143 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEE-ECCSB-CT-TSCBCBCCCEEEECTTSCEEEEECBCBCTTSC
T ss_pred             CCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEE-EEEec-cC-CCccccCCcCEEECCCCCEEEEecCccccccc
Confidence            4567999999999 6655544 44468889876 4422 11 11 00 00122457899999999877776554      


Q ss_pred             ---------CcEEEEeCCCCceeecccCCCCcEEEEEec----CCCCeEEEE-cCCCcEEEEECC-CCee-----eEEEe
Q 016257          134 ---------GHLRIMHWPSLRIILDEPKAHKSVLDMDFS----LDSEFLATT-STDGSARIWKTE-DGVA-----WTFLT  193 (392)
Q Consensus       134 ---------g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~----~~~~~l~~~-~~d~~i~vwd~~-~~~~-----~~~~~  193 (392)
                               +.|..++.. ++.. ...........++|+    |+++.++.+ ..++.|.+||.+ +++.     ...+.
T Consensus       144 ~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  221 (314)
T 1pjx_A          144 YTRSMQEKFGSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP  221 (314)
T ss_dssp             CCBTTSSSCEEEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC
T ss_pred             ccccccCCCCeEEEECCC-CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC
Confidence                     567777765 4432 222233456889999    999765544 567899999986 4432     11222


Q ss_pred             cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEe-CCCcEEEEe
Q 016257          194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVD  272 (392)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd  272 (392)
                      .+....+..+++++++..     .++...++.|.+||.++++.+..+..+...+.+++++|+++.|++++ .++.|..|+
T Consensus       222 ~~~~~~p~~i~~d~~G~l-----~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~  296 (314)
T 1pjx_A          222 GTHEGGADGMDFDEDNNL-----LVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             CCSSCEEEEEEEBTTCCE-----EEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCCCCCceEECCCCCE-----EEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence            111035788999999974     34444678899999987776666665557889999999999665554 567899999


Q ss_pred             cCCc
Q 016257          273 VKKM  276 (392)
Q Consensus       273 ~~~~  276 (392)
                      +...
T Consensus       297 ~~~~  300 (314)
T 1pjx_A          297 WQRN  300 (314)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            8753

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.53  E-value=3e-12  Score=111.54  Aligned_cols=279  Identities=8%  Similarity=-0.046  Sum_probs=177.8

Q ss_pred             EEEcCCCCeEEEEeC-----CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe----------CC
Q 016257           69 IAVNPSGDDFVCSTT-----NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG----------VD  133 (392)
Q Consensus        69 ~~~sp~~~~l~~~~~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d  133 (392)
                      ....|+++.+++...     ++.|.++|..+.+....+...       ..+ . ++++|||++++++.          .+
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG-------~~P-~-va~spDG~~lyVan~~~~r~~~G~~~  108 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-------FLP-N-PVVADDGSFIAHASTVFSRIARGERT  108 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-------SSC-E-EEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC-------CCC-c-EEECCCCCEEEEEcccccccccCCCC
Confidence            445789998888765     578999999888866555432       223 4 99999999988775          36


Q ss_pred             CcEEEEeCCCCceeecccCCC-------CcEEEEEecCCCCeEEEEcC--CCcEEEEECCCCeeeEEEecCCCcceEEEE
Q 016257          134 GHLRIMHWPSLRIILDEPKAH-------KSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFLTRNSDEKIELCR  204 (392)
Q Consensus       134 g~i~i~d~~~~~~~~~~~~~~-------~~i~~i~~~~~~~~l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~  204 (392)
                      +.|.+||..+.+.+..+.-..       .....+.++|||++++++..  ++.|.++|+.+++.+.++....   .  ..
T Consensus       109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g---~--~~  183 (386)
T 3sjl_D          109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD---C--YH  183 (386)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---E--EE
T ss_pred             CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC---c--ce
Confidence            789999999998776553221       24567899999999888864  6889999999999998886432   1  12


Q ss_pred             ecCCCCcceEEEEEEeCCccEEEEEeCCC-ceeeeee----cccCCCcE-EEEEC-CCCCEEEEEeCCCcEEEEecCCce
Q 016257          205 FSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHK----RLLRKPAS-VLSIS-LDGKYLAMGSKDGDICVVDVKKME  277 (392)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~d~~i~v~d~~~-~~~~~~~----~~~~~~v~-~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~  277 (392)
                      ..|.+...    +++.+.||.+.+.++.. ++.....    .....++. ...|. ++|++++ .+.+|.|++.|+.+..
T Consensus       184 ~~P~g~~~----~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~  258 (386)
T 3sjl_D          184 IFPTAPDT----FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD  258 (386)
T ss_dssp             EEEEETTE----EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS
T ss_pred             eecCCCce----eEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc
Confidence            22443321    34555677777777765 4432111    11112221 23553 6776555 5558999999997654


Q ss_pred             --eeeeee--------ccccCcceEEEEEeeCCCeEEEEeC----------CCeEEEEEeecCccccceeeeeeeeeeee
Q 016257          278 --INHWSK--------RLHLGTSIALVEFCPTQRVVLTASK----------EWGAMITKLTVPADWKEWQIYSLLLALFL  337 (392)
Q Consensus       278 --~~~~~~--------~~~~~~~i~~~~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  337 (392)
                        ....+.        .+-.......++++++++.++....          .+.|.+.|+.+.+....+.+...+.++.+
T Consensus       259 ~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lav  338 (386)
T 3sjl_D          259 AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINV  338 (386)
T ss_dssp             CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEE
T ss_pred             ceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEE
Confidence              222221        0100233445778999887777643          24677777777666555555444434433


Q ss_pred             --ece-EEEEee-ecceeeeecccccccccCCC
Q 016257          338 --ASA-VVFYIF-FENSDSFWNFPVARNQHGGP  366 (392)
Q Consensus       338 --~~~-~~~~~~-~d~~i~~W~~~~~~~~~~~p  366 (392)
                        ... .++++. .++.|.++|..+++.+...+
T Consensus       339 s~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~  371 (386)
T 3sjl_D          339 SQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  371 (386)
T ss_dssp             CSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             CCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence              222 334433 48899999999988664433

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.53  E-value=5e-12  Score=108.67  Aligned_cols=229  Identities=10%  Similarity=-0.032  Sum_probs=148.5

Q ss_pred             eeCCCCCeeEEEEcCCCC-eEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEE
Q 016257           59 FDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (392)
Q Consensus        59 ~~~h~~~v~~~~~sp~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  137 (392)
                      +...........|+|+++ ++++...++.|..|+. +++ ...+..       +...+..++++++|+++++...++.|.
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~-------~~~~~~gl~~d~dG~l~v~~~~~~~v~  110 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLD-------ATAFTNGNAVDAQQRLVHCEHGRRAIT  110 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEE-------SCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeC-------CCCccceeeECCCCCEEEEECCCCEEE
Confidence            444556788999999998 5566667888999986 333 122211       235689999999998766655567899


Q ss_pred             EEeCCCCceeeccc--CC--CCcEEEEEecCCCCeEEE----EcC-------------CCcEEEEECCCCeeeEEEecCC
Q 016257          138 IMHWPSLRIILDEP--KA--HKSVLDMDFSLDSEFLAT----TST-------------DGSARIWKTEDGVAWTFLTRNS  196 (392)
Q Consensus       138 i~d~~~~~~~~~~~--~~--~~~i~~i~~~~~~~~l~~----~~~-------------d~~i~vwd~~~~~~~~~~~~~~  196 (392)
                      .|+.+ ++......  ..  ...+.+++++|+|+++++    +..             .+.|..+|..+++.....  ..
T Consensus       111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~  187 (305)
T 3dr2_A          111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL  187 (305)
T ss_dssp             EECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE
T ss_pred             EECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC
Confidence            99975 44321111  11  124678999999998876    332             246777887666544332  22


Q ss_pred             CcceEEEEecCCCCcceEEEEEEeCC-----ccEEEEEeCCCceee--eee-cccCCCcEEEEECCCCCEEEEEeCCCcE
Q 016257          197 DEKIELCRFSKDGTKPFLFCTVQRGD-----KALLAVYDISTWNKI--GHK-RLLRKPASVLSISLDGKYLAMGSKDGDI  268 (392)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~~~~~~~-----d~~i~v~d~~~~~~~--~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i  268 (392)
                       .....++|+|+++.++    ++...     .+.|.+||+......  ..+ .........++++++|++ .+++.++ |
T Consensus       188 -~~p~gl~~spdg~~ly----v~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~g-v  260 (305)
T 3dr2_A          188 -DHPNGLAFSPDEQTLY----VSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGTG-V  260 (305)
T ss_dssp             -SSEEEEEECTTSSEEE----EEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSSE-E
T ss_pred             -CCCcceEEcCCCCEEE----EEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCCc-E
Confidence             2467899999998632    22222     378999998754311  111 112334557899999994 4444554 9


Q ss_pred             EEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCC
Q 016257          269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW  310 (392)
Q Consensus       269 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  310 (392)
                      .+|+.. ++....+. .+  ..+.+++|+++++.|..++.++
T Consensus       261 ~~~~~~-g~~~~~~~-~~--~~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          261 CVFDSD-GQLLGHIP-TP--GTASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             EEECTT-SCEEEEEE-CS--SCCCEEEECTTSCEEEEEETTE
T ss_pred             EEECCC-CCEEEEEE-CC--CceeEEEEeCCCCEEEEEcCCe
Confidence            999984 55555443 22  3588999999998888887763

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.52  E-value=4.3e-12  Score=110.95  Aligned_cols=244  Identities=9%  Similarity=-0.005  Sum_probs=154.3

Q ss_pred             CCeeEEEEcCCCCeEEEEe--CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC-----CCcE
Q 016257           64 GDPMTIAVNPSGDDFVCST--TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHL  136 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i  136 (392)
                      ..+..++++|+|+.+++..  .++.++||.+.+++ ...+.........+...+..++++++++++++-..     +..|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            6799999999999888864  23436677766433 22111100111134568999999999876665433     5789


Q ss_pred             EEEeCCCCceeecccC------CCCcEEEEEecCCCCeE-EEEc---CCCcEEEEECCCCeeeEEEecCC----------
Q 016257          137 RIMHWPSLRIILDEPK------AHKSVLDMDFSLDSEFL-ATTS---TDGSARIWKTEDGVAWTFLTRNS----------  196 (392)
Q Consensus       137 ~i~d~~~~~~~~~~~~------~~~~i~~i~~~~~~~~l-~~~~---~d~~i~vwd~~~~~~~~~~~~~~----------  196 (392)
                      .+||+++++.+..+..      +...+..+++++++..+ ++-.   .++.|.+||+.+++..+.+..+.          
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            9999998875543322      11346899999865554 4444   57889999998877655442210          


Q ss_pred             ------------------CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC---ce-----eee--eecccCCCcE
Q 016257          197 ------------------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST---WN-----KIG--HKRLLRKPAS  248 (392)
Q Consensus       197 ------------------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~---~~-----~~~--~~~~~~~~v~  248 (392)
                                        ...+..++|+|+++.+|    ++......+..++...   +.     ...  ....+.....
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pd  251 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLY----LSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICD  251 (343)
T ss_dssp             ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEE----EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCS
T ss_pred             ECCEEEEeccCCCceeceecccceeEeccCCCEEE----EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCc
Confidence                              01257899999998632    2233334666665321   00     000  1112233455


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEE
Q 016257          249 VLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAM  313 (392)
Q Consensus       249 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  313 (392)
                      .++++++|.++++...++.|.+||.++++........+ ...+.+++|.++++++++.+..+.+.
T Consensus       252 gia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~-~~~p~~va~~~~g~l~v~~~~~~~~~  315 (343)
T 2qe8_A          252 GISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEK-LSWTDSFNFGSDGYLYFDCNQLHHSA  315 (343)
T ss_dssp             CEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGG-GSCEEEEEECTTSCEEEEECCGGGSG
T ss_pred             eEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCc-eecCCeeEECCCCcEEEEeCcccccc
Confidence            78999999999998889999999985666543332222 45689999999998877776554443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.51  E-value=3e-12  Score=113.51  Aligned_cols=274  Identities=9%  Similarity=-0.036  Sum_probs=179.3

Q ss_pred             CCCCeEEEEeCC-----CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe----------CCCcEE
Q 016257           73 PSGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG----------VDGHLR  137 (392)
Q Consensus        73 p~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~  137 (392)
                      |+++.+++....     +.|.++|..+.+....+....       .+  .+.++||+++++++.          .++.|.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-------~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~Vs  152 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-------LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVE  152 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-------SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-------CC--ceEECCCCCEEEEEeccccccccCCCCCEEE
Confidence            467777766543     689999999988766655422       24  899999999988876          367899


Q ss_pred             EEeCCCCceeecccCC-------CCcEEEEEecCCCCeEEEEcC--CCcEEEEECCCCeeeEEEecCCCcceEEEEecCC
Q 016257          138 IMHWPSLRIILDEPKA-------HKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD  208 (392)
Q Consensus       138 i~d~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (392)
                      ++|..+++.+..+.-.       ......+.++|||++++++..  ++.|.+.|+.+++.+.++....     +....|+
T Consensus       153 viD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g-----~~~~~p~  227 (426)
T 3c75_H          153 VFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD-----CYHIFPA  227 (426)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-----EEEEEEE
T ss_pred             EEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC-----ceeeccC
Confidence            9999999877655321       123457899999999998864  5789999999999988887432     1234454


Q ss_pred             CCcceEEEEEEeCCccEEEEEeCCCceeeee----ecccCCCc-EEEEECCCCCEEEEEeCCCcEEEEecCCceeee--e
Q 016257          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGH----KRLLRKPA-SVLSISLDGKYLAMGSKDGDICVVDVKKMEINH--W  281 (392)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~----~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~  281 (392)
                      +...    +++.+.|+.+.+.+..+++....    +.....++ ..+.+++++..++..+..+.+.+.|..+.....  .
T Consensus       228 g~~~----~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~  303 (426)
T 3c75_H          228 SPTV----FYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAP  303 (426)
T ss_dssp             ETTE----EEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCC
T ss_pred             CCcE----EEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeee
Confidence            4432    23344566666666654443311    11111121 135679999888888888999999997654221  1


Q ss_pred             eecc------c--cCcceEEEEEeeCCCeEEEEeC----------CCeEEEEEeecCccccceeeeeeeeeeeee--ce-
Q 016257          282 SKRL------H--LGTSIALVEFCPTQRVVLTASK----------EWGAMITKLTVPADWKEWQIYSLLLALFLA--SA-  340 (392)
Q Consensus       282 ~~~~------~--~~~~i~~~~~s~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~--~~-  340 (392)
                      +...      .  .......++++|+++.+++...          ++.|.+.|+...+....+.+...+.+..+.  .. 
T Consensus       304 ~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~  383 (426)
T 3c75_H          304 IEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEP  383 (426)
T ss_dssp             EESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSC
T ss_pred             eeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCE
Confidence            1000      0  0112223789999887766542          357999998877766655554445554443  33 


Q ss_pred             EEEEee-ecceeeeecccccccccC
Q 016257          341 VVFYIF-FENSDSFWNFPVARNQHG  364 (392)
Q Consensus       341 ~~~~~~-~d~~i~~W~~~~~~~~~~  364 (392)
                      .+++.. .++.|.++|+.+++.+..
T Consensus       384 ~lyv~n~~s~~VsVID~~t~kvv~t  408 (426)
T 3c75_H          384 LLYALSAGTQTLHIYDAATGEELRS  408 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             EEEEEcCCCCeEEEEECCCCCEEEE
Confidence            455555 489999999999886644

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.48  E-value=1.9e-11  Score=104.59  Aligned_cols=228  Identities=11%  Similarity=0.043  Sum_probs=141.1

Q ss_pred             eecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEE
Q 016257            9 CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCK   88 (392)
Q Consensus         9 ~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~   88 (392)
                      +..|+|+...  ++.+...      .+.  |+.+++.+...       ..+ .....+.+++++|+|+++++ . ++.|.
T Consensus        17 gp~w~~~~~~--l~~~d~~------~~~--i~~~d~~~~~~-------~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~   76 (297)
T 3g4e_A           17 SPVWEEVSNS--LLFVDIP------AKK--VCRWDSFTKQV-------QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFC   76 (297)
T ss_dssp             EEEEETTTTE--EEEEETT------TTE--EEEEETTTCCE-------EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEE
T ss_pred             CCeEECCCCE--EEEEECC------CCE--EEEEECCCCcE-------EEE-eCCCceEEEEECCCCCEEEE-E-CCeEE
Confidence            5678886654  3333222      223  55555543221       112 23567999999999995554 4 45699


Q ss_pred             EEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC---------CcEEEEeCCCCceeecccCCCCcEEE
Q 016257           89 LFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---------GHLRIMHWPSLRIILDEPKAHKSVLD  159 (392)
Q Consensus        89 iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~i~~  159 (392)
                      +||..+++... +....  .......++.++++|+|+++++....         ..-.+|.+..................
T Consensus        77 ~~d~~~g~~~~-~~~~~--~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~png  153 (297)
T 3g4e_A           77 ALNWKEQSAVV-LATVD--NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNG  153 (297)
T ss_dssp             EEETTTTEEEE-EEECC--TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEE
T ss_pred             EEECCCCcEEE-EEecC--CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccc
Confidence            99987665322 11110  00122457899999999866654221         23455555432222222233345688


Q ss_pred             EEecCCCCeEE-EEcCCCcEEEEEC--CCCeee--EEEec--CCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC
Q 016257          160 MDFSLDSEFLA-TTSTDGSARIWKT--EDGVAW--TFLTR--NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (392)
Q Consensus       160 i~~~~~~~~l~-~~~~d~~i~vwd~--~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~  232 (392)
                      ++|+|+++.|+ +.+.++.|.+|++  .++...  ..+..  ........++++++|..     .++....+.|..||..
T Consensus       154 i~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~l-----wva~~~~~~v~~~d~~  228 (297)
T 3g4e_A          154 LDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKL-----WVACYNGGRVIRLDPV  228 (297)
T ss_dssp             EEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCE-----EEEEETTTEEEEECTT
T ss_pred             eEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCE-----EEEEcCCCEEEEEcCC
Confidence            99999998765 4556788999997  444331  12211  11235789999999973     3444556789999999


Q ss_pred             CceeeeeecccCCCcEEEEEC-CCCCEEEEEeC
Q 016257          233 TWNKIGHKRLLRKPASVLSIS-LDGKYLAMGSK  264 (392)
Q Consensus       233 ~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~  264 (392)
                      +++.+..+......+++++|. |+++.|++++.
T Consensus       229 tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          229 TGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             TCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            888887777766789999998 88887776654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.47  E-value=8.3e-11  Score=105.08  Aligned_cols=238  Identities=10%  Similarity=-0.004  Sum_probs=148.9

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCC
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~   85 (392)
                      ....++|++++   .+.++...      .+.|+.|.  ..+.      ........ ..... ++|+|+++.|+++..++
T Consensus       132 ~P~~la~d~~g---~lyv~d~~------~~~I~~id--~~~g------~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~  192 (409)
T 3hrp_A          132 YMWGIAAVGNN---TVLAYQRD------DPRVRLIS--VDDN------KVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEG  192 (409)
T ss_dssp             CEEEEEECSTT---EEEEEETT------TTEEEEEE--TTTT------EEEEEEET-CCBCB-CEECTTSSEEEEEBSST
T ss_pred             CceEEEEeCCC---CEEEEecC------CCcEEEEE--CCCC------EEEEeecc-CCCCc-eeEecCCCcEEEEecCC
Confidence            34578888876   34443332      23344444  3322      22222222 33344 99999999998888765


Q ss_pred             --eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeec----ccCCCCc--E
Q 016257           86 --GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD----EPKAHKS--V  157 (392)
Q Consensus        86 --~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~--i  157 (392)
                        .|.+++.......... .. .. ......+.+++++|++..|+++..++.|+.||..++.....    .......  .
T Consensus       193 ~~~I~~~d~~~~~~~~~~-g~-~~-~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~  269 (409)
T 3hrp_A          193 THTVYVYMKASGWAPTRI-GQ-LG-STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPG  269 (409)
T ss_dssp             TCEEEEEEGGGTTCEEEE-EE-CC-TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSC
T ss_pred             CceEEEEEcCCCceeEEe-ee-cc-chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCcc
Confidence              6777776554332221 00 00 01234678899999555666677788999999987764322    2222221  2


Q ss_pred             EEEEecCC-CCeEEEEcCCCcEEEEECCCCeeeEEEecCC--------------CcceEEEEecCCCCcceEEEEEEeC-
Q 016257          158 LDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNS--------------DEKIELCRFSKDGTKPFLFCTVQRG-  221 (392)
Q Consensus       158 ~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~~~~~~~~~~~-  221 (392)
                      ..++|+|+ +.++++-..++.|+.|+....  ...+....              -.....++++|++..     .++.. 
T Consensus       270 ~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~l-----yvad~~  342 (409)
T 3hrp_A          270 PYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNF-----YIVDGF  342 (409)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCE-----EEEETT
T ss_pred             ccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCE-----EEEeCC
Confidence            39999995 555666667788999997543  23332221              124789999999984     46666 


Q ss_pred             CccEEEEEeCCCceeeeeeccc---------------CCCcEEEEECCCCCEEEEEeCCCcEEEEec
Q 016257          222 DKALLAVYDISTWNKIGHKRLL---------------RKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (392)
Q Consensus       222 ~d~~i~v~d~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  273 (392)
                      .++.|+.||+.++... .+..+               -.....++++++|.++++-..+++|+.+++
T Consensus       343 ~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          343 KGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            7899999998776543 22222               135788999999888888778888888775

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.46  E-value=2.2e-11  Score=104.66  Aligned_cols=232  Identities=13%  Similarity=0.073  Sum_probs=145.2

Q ss_pred             eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 016257            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (392)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~   86 (392)
                      .....|+|++..  ++.++..      .+.|  +.+++.+. .       ..+..+...+..++++++|+++++...++.
T Consensus        47 ~egp~~~~~g~~--l~~~d~~------~~~i--~~~~~~g~-~-------~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~  108 (305)
T 3dr2_A           47 SEGPAWWEAQRT--LVWSDLV------GRRV--LGWREDGT-V-------DVLLDATAFTNGNAVDAQQRLVHCEHGRRA  108 (305)
T ss_dssp             EEEEEEEGGGTE--EEEEETT------TTEE--EEEETTSC-E-------EEEEESCSCEEEEEECTTSCEEEEETTTTE
T ss_pred             ccCCeEeCCCCE--EEEEECC------CCEE--EEEeCCCC-E-------EEEeCCCCccceeeECCCCCEEEEECCCCE
Confidence            456788888754  4443333      2334  44444321 1       233445677999999999997766556678


Q ss_pred             EEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEE----EeC-------------CCcEEEEeCCCCceeec
Q 016257           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA----GGV-------------DGHLRIMHWPSLRIILD  149 (392)
Q Consensus        87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~  149 (392)
                      |.+|+.. ++. ..+.... . ......+..+++.++|++.++    |..             .+.|..+|.++++....
T Consensus       109 v~~~~~~-g~~-~~~~~~~-~-~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~  184 (305)
T 3dr2_A          109 ITRSDAD-GQA-HLLVGRY-A-GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM  184 (305)
T ss_dssp             EEEECTT-SCE-EEEECEE-T-TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred             EEEECCC-CCE-EEEEecc-C-CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence            9998864 332 1111110 0 001235678999999988776    332             24577778766664432


Q ss_pred             ccCCCCcEEEEEecCCCCeEEEEcCC------CcEEEEECCCCee--eEEEecCCCcceEEEEecCCCCcceEEEEEEeC
Q 016257          150 EPKAHKSVLDMDFSLDSEFLATTSTD------GSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (392)
Q Consensus       150 ~~~~~~~i~~i~~~~~~~~l~~~~~d------~~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (392)
                      .  .......++|+||++.|+.+...      +.|.+|++..+..  ...+..........++++++|.      +..+.
T Consensus       185 ~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~------lwv~~  256 (305)
T 3dr2_A          185 A--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW------LWSSS  256 (305)
T ss_dssp             E--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC------EEECC
T ss_pred             e--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC------EEEec
Confidence            2  33457889999999988777654      6899999876541  1122111223456789999998      35555


Q ss_pred             CccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEe
Q 016257          222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (392)
Q Consensus       222 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  272 (392)
                      .+ .|.+||.. ++.+..+.... .+..++|+|+++.|+.++.++ +..++
T Consensus       257 ~~-gv~~~~~~-g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          257 GT-GVCVFDSD-GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             SS-EEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred             CC-cEEEECCC-CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence            44 49999985 55655555444 588899999999988888764 44333

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.43  E-value=1.3e-11  Score=107.68  Aligned_cols=235  Identities=8%  Similarity=-0.088  Sum_probs=150.4

Q ss_pred             EEEEcCCCCeEEEEe----------CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC--CCc
Q 016257           68 TIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGH  135 (392)
Q Consensus        68 ~~~~sp~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~  135 (392)
                      .+.++||+++++++.          .++.|.+||..+.+...++................++++|||++++++..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            799999999998886          36789999999988766654321000000123567999999999999875  456


Q ss_pred             EEE--EeCCCCceeecccCCCCcEEEEEecCCCC-eEEEEcCCCcEEEEECCC-----CeeeEE----EecCCCcceEEE
Q 016257          136 LRI--MHWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTED-----GVAWTF----LTRNSDEKIELC  203 (392)
Q Consensus       136 i~i--~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~-----~~~~~~----~~~~~~~~v~~~  203 (392)
                      +.+  +|..+   +..+.-. +.   ....|+++ .+++.+.|+.+.+.|+.+     ++....    +... ..+.   
T Consensus       149 v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg-~~P~---  217 (368)
T 1mda_H          149 AGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCS-SQAA---  217 (368)
T ss_dssp             EEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBC-SCCE---
T ss_pred             EEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCC-CCcc---
Confidence            888  88876   2222111 11   12345443 445566788888888876     433211    1111 1122   


Q ss_pred             EecCCCCcceEEEEEEeCCccEEEEEeCCCce--eeeeecc----------cCCCcEEEEECCCCCEEEEEeC-C-----
Q 016257          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRL----------LRKPASVLSISLDGKYLAMGSK-D-----  265 (392)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~--~~~~~~~----------~~~~v~~~~~s~~~~~l~~~~~-d-----  265 (392)
                      . .+++..     ++..+. +.+.+.|.....  .+..+..          .......++++|+++.++++.. +     
T Consensus       218 ~-~~~~~~-----~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~  290 (368)
T 1mda_H          218 Q-ANYPGM-----LVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL  290 (368)
T ss_dssp             E-ETTTTE-----EEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTT
T ss_pred             c-cccCCE-----EEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccc
Confidence            3 555554     333334 889999986532  2222211          0112223689999998887643 2     


Q ss_pred             ---CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCC-eEEEEe-CCCeEEEEEeecCccc
Q 016257          266 ---GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTAS-KEWGAMITKLTVPADW  323 (392)
Q Consensus       266 ---g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~  323 (392)
                         +.+.++|+.+++.+..+..   ......++|+|||+ .+++.. .++.|.++|+...+..
T Consensus       291 ~~~~~~~ViD~~t~~vv~~i~v---g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv  350 (368)
T 1mda_H          291 AAAENTSSVTASVGQTSGPISN---GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             SCEEEEEEEESSSCCEEECCEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             ccCCCEEEEECCCCeEEEEEEC---CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence               3567999999998887754   34689999999998 456666 5899999999866543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.41  E-value=5.8e-15  Score=130.33  Aligned_cols=266  Identities=12%  Similarity=-0.017  Sum_probs=140.3

Q ss_pred             CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCC
Q 016257           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (392)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  153 (392)
                      ++..+++++.|+.|+.||..+++...++..         +.+.+..+..++..+++++.|+.|+.||.++++.+.....+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~   78 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT   78 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC---------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC---------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence            567899999999999999999887665543         12333334467777888789999999999988875544332


Q ss_pred             CC-cEE-EEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeC
Q 016257          154 HK-SVL-DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (392)
Q Consensus       154 ~~-~i~-~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~  231 (392)
                      .. .+. +..+. ++..+++++.|+.++.||.++++.+..+..+.     ...++|++..     ++.++.++.|+.||.
T Consensus        79 ~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~-----v~~~~~dg~v~a~d~  147 (369)
T 2hz6_A           79 IPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSL-----LYLGRTEYTITMYDT  147 (369)
T ss_dssp             HHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------------EEEEEEEEEEECCCS
T ss_pred             CccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCE-----EEEEecCCEEEEEEC
Confidence            21 111 11111 34567788889999999999998877665432     2345566665     677788899999999


Q ss_pred             CCceeeeeecccCCCcEEEEECCCC---CEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEE-EEEeeCCCeE----
Q 016257          232 STWNKIGHKRLLRKPASVLSISLDG---KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL-VEFCPTQRVV----  303 (392)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l----  303 (392)
                      ++++.+-.+....  .....++++.   ..+++++.||.|+.||.++++.+-...  . ..++.. ..++++|...    
T Consensus       148 ~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~--~-~~pv~~~~~~~~dg~~~v~~~  222 (369)
T 2hz6_A          148 KTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN--Y-ASPVVAFYVWQREGLRKVMHI  222 (369)
T ss_dssp             SSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE--C-SSCEEEEEECTTSSCEEECCE
T ss_pred             CCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec--C-CCceEEEEEecCCceEeccce
Confidence            9988764443211  1122333332   567778899999999999998765543  2 344433 3444455321    


Q ss_pred             EEEeCCCeEEEEEeecCc--cccceeeeee--eeeeeeeceEEEEeeecceeeeecccccccccCCC
Q 016257          304 LTASKEWGAMITKLTVPA--DWKEWQIYSL--LLALFLASAVVFYIFFENSDSFWNFPVARNQHGGP  366 (392)
Q Consensus       304 ~~~~~dg~i~iw~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~p  366 (392)
                      +.+  ++.++.++...++  ....|.....  ........+.++.+..++.++..+....+..+..|
T Consensus       223 ~~~--~~~l~~ld~~tG~~~~~~~W~~~~~~~~~sp~~~~g~lyv~~~~G~l~al~~~~~~~~~~~~  287 (369)
T 2hz6_A          223 NVA--VETLRYLTFMSGEVGRITKWKYPFPKETEAKSKLTPTLYVGKYSTSLYASPSMVHEGVAVVP  287 (369)
T ss_dssp             EEE--HHHHHHHHHHHHHHHHHHTSCCCCCCHHHHHHHSEEEECBEECSSCEECCEEEECTTCCBC-
T ss_pred             eec--ccceeeeehhcCCcccceeeeeccCccccccccccceEEEecccCCEEecCccccCCcccCc
Confidence            111  2334444443322  0012322110  00111244566777788999998887655554444

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.39  E-value=7.5e-11  Score=113.01  Aligned_cols=251  Identities=10%  Similarity=0.029  Sum_probs=148.6

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d   84 (392)
                      ..+..++|+||++++++...-++    .....|++++++  +...     ....+.+  .....++|+ |++.|+.++.+
T Consensus       129 ~~l~~~~~SpDg~~lAy~~~~~G----~~~~~i~v~dl~--tg~~-----~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~  194 (693)
T 3iuj_A          129 TALDQLSFSRDGRILAYSLSLAG----SDWREIHLMDVE--SKQP-----LETPLKD--VKFSGISWL-GNEGFFYSSYD  194 (693)
T ss_dssp             CEEEEEEECTTSSEEEEEEECSS----CCEEEEEEEETT--TCSE-----EEEEEEE--EESCCCEEE-TTTEEEEEESS
T ss_pred             EEEEEEEECCCCCEEEEEEecCC----CceEEEEEEECC--CCCC-----CccccCC--ceeccEEEe-CCCEEEEEEec
Confidence            35778899999976444332111    112345555544  3222     1112221  113568899 99999988877


Q ss_pred             C-------------eEEEEEEeCCccceeeccccCCCCC-CCCCeEEEEecCCCCEEEEEeC----CCcEEEEeCCCCc-
Q 016257           85 G-------------GCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGGV----DGHLRIMHWPSLR-  145 (392)
Q Consensus        85 ~-------------~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~-  145 (392)
                      .             .|++|++.+...........   .. +......+.|+|||++|+....    +..|+++|+.++. 
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~---~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~  271 (693)
T 3iuj_A          195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA---IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA  271 (693)
T ss_dssp             CCC-------CCCCEEEEEETTSCGGGCEEEESC---SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred             CcccccccccCCCcEEEEEECCCCcccceEEEec---CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence            4             38888887665322222111   01 2334678999999998865432    3589999997763 


Q ss_pred             eeecccCCCCcEEEEEecCCCCeEEE-EcCC---CcEEEEECCCCee--eEEEecCCCcceEEEEecCCCCcceEEEEEE
Q 016257          146 IILDEPKAHKSVLDMDFSLDSEFLAT-TSTD---GSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (392)
Q Consensus       146 ~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~d---~~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (392)
                      ....+..+....... |+++++.|+. ...+   +.|..+|+.++..  ...+..+... +.  .|++++..+++  ...
T Consensus       272 ~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~--~~s~~g~~lv~--~~~  345 (693)
T 3iuj_A          272 PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-VL--TVHSGSGYLFA--EYM  345 (693)
T ss_dssp             CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-CE--EEEEETTEEEE--EEE
T ss_pred             ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC-EE--EEEEECCEEEE--EEE
Confidence            233344444444444 6666665554 4333   5799999987654  3445544443 33  88999886321  111


Q ss_pred             eCCccEEEEEeCCCceeeeeec-ccCCCcEEEEECCCCCEEEEEeCC----CcEEEEecCCceee
Q 016257          220 RGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLAMGSKD----GDICVVDVKKMEIN  279 (392)
Q Consensus       220 ~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~  279 (392)
                      ......|.+||+..+.. ..+. .....+..+.++++++.++....+    +.++.||+.+++..
T Consensus       346 ~~g~~~l~~~d~~g~~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~  409 (693)
T 3iuj_A          346 VDATARVEQFDYEGKRV-REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS  409 (693)
T ss_dssp             ETTEEEEEEECTTSCEE-EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred             ECCeeEEEEEECCCCee-EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence            22223799999985543 3333 233456677788888777665544    78999999887643

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.38  E-value=3.2e-11  Score=114.94  Aligned_cols=294  Identities=10%  Similarity=0.046  Sum_probs=178.8

Q ss_pred             CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCC-C-CC-CCe-EEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecc
Q 016257           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL-Q-DA-GPQ-KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE  150 (392)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-~-~~-~~v-~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  150 (392)
                      +..|++++.++.|+-+|..+++...+......... . .. ..+ ..+..  ++..+++++.|+.|..+|.++|+.+...
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            55777777888899999988887665532211000 0 00 000 11222  3568888999999999999999987655


Q ss_pred             cCC-C-CcEEEEEecC--CCCeEEEEc------CCCcEEEEECCCCeeeEEEecCCC-----------------------
Q 016257          151 PKA-H-KSVLDMDFSL--DSEFLATTS------TDGSARIWKTEDGVAWTFLTRNSD-----------------------  197 (392)
Q Consensus       151 ~~~-~-~~i~~i~~~~--~~~~l~~~~------~d~~i~vwd~~~~~~~~~~~~~~~-----------------------  197 (392)
                      ... . .....+..+|  .+..+++++      .++.|+.||.++++.+-.+.....                       
T Consensus       148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w  227 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY  227 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred             cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence            432 1 1111111222  133444443      368999999999998877652110                       


Q ss_pred             -------cceEEEEecCCCCcceEEEEEEeCCcc-------------------EEEEEeCCCceeeeeeccc--C-----
Q 016257          198 -------EKIELCRFSKDGTKPFLFCTVQRGDKA-------------------LLAVYDISTWNKIGHKRLL--R-----  244 (392)
Q Consensus       198 -------~~v~~~~~~~~~~~~~~~~~~~~~~d~-------------------~i~v~d~~~~~~~~~~~~~--~-----  244 (392)
                             .....++++|+...     ++.+..++                   .|..+|.++++.+-.+...  .     
T Consensus       228 ~~~~~g~~~w~~~~~d~~~~~-----vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~  302 (689)
T 1yiq_A          228 VEQGGGGTAWDSFAYDPELNL-----LYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYT  302 (689)
T ss_dssp             HHHCEECCCCSCEEEETTTTE-----EEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCC
T ss_pred             eecCCCCccccceeEcCCCCE-----EEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccccccc
Confidence                   00125778887775     44555554                   4999999999987555432  1     


Q ss_pred             --CCcEEEEECCCCC---EEEEEeCCCcEEEEecCCceeeeeeecccc--------------------------C-----
Q 016257          245 --KPASVLSISLDGK---YLAMGSKDGDICVVDVKKMEINHWSKRLHL--------------------------G-----  288 (392)
Q Consensus       245 --~~v~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------------------------~-----  288 (392)
                        .+........+|+   .++.++.+|.++++|.++++.+........                          .     
T Consensus       303 ~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~  382 (689)
T 1yiq_A          303 ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT  382 (689)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES
T ss_pred             CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeC
Confidence              1122222223565   788999999999999999998633211100                          0     


Q ss_pred             ------cceEEEEEeeCCCeEEEEeC---------------------------------------------CCeEEEEEe
Q 016257          289 ------TSIALVEFCPTQRVVLTASK---------------------------------------------EWGAMITKL  317 (392)
Q Consensus       289 ------~~i~~~~~s~~~~~l~~~~~---------------------------------------------dg~i~iw~~  317 (392)
                            ..-..++++|+..++++...                                             +|.++.||+
T Consensus       383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~  462 (689)
T 1yiq_A          383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP  462 (689)
T ss_dssp             SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred             CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence                  00112788998887776532                                             367888888


Q ss_pred             ecCccccceeeeeee----eeeeeeceEEEEeeecceeeeecccccccccCCCCcccccCCCCC
Q 016257          318 TVPADWKEWQIYSLL----LALFLASAVVFYIFFENSDSFWNFPVARNQHGGPKIESILRDPQS  377 (392)
Q Consensus       318 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~p~~~~~~~~~~~  377 (392)
                      .+++.  .|......    .....+.+.++.++.|+.++.||..+|+.+........+...|..
T Consensus       463 ~tG~~--~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~t  524 (689)
T 1yiq_A          463 VKQQA--AWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVT  524 (689)
T ss_dssp             TTTEE--EEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred             CCCCe--EeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceE
Confidence            76653  45432211    122335668888889999999999999988654443344444544

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.38  E-value=3.5e-10  Score=98.07  Aligned_cols=226  Identities=10%  Similarity=-0.015  Sum_probs=137.5

Q ss_pred             eeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeE
Q 016257            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGC   87 (392)
Q Consensus         8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i   87 (392)
                      .+..|+|++..  ++.++..      .+.  |+.++..+...       ..+. ....+.++.|+|+|+++++. .++ |
T Consensus        52 egp~~~~~~~~--l~~~d~~------~~~--i~~~d~~~~~~-------~~~~-~~~~v~~i~~~~dg~l~v~~-~~g-l  111 (326)
T 2ghs_A           52 EGPTFDPASGT--AWWFNIL------ERE--LHELHLASGRK-------TVHA-LPFMGSALAKISDSKQLIAS-DDG-L  111 (326)
T ss_dssp             EEEEEETTTTE--EEEEEGG------GTE--EEEEETTTTEE-------EEEE-CSSCEEEEEEEETTEEEEEE-TTE-E
T ss_pred             cCCeEeCCCCE--EEEEECC------CCE--EEEEECCCCcE-------EEEE-CCCcceEEEEeCCCeEEEEE-CCC-E
Confidence            46678887654  3333222      222  55555543322       1122 24679999999999877654 444 8


Q ss_pred             EEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC------CCcEEEEeCCCCceeecccCCCCcEEEEE
Q 016257           88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV------DGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (392)
Q Consensus        88 ~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~i~  161 (392)
                      .+||..+++... +...  ........+..++++|+|+++++...      .+.|..++  +++.. .+.........++
T Consensus       112 ~~~d~~~g~~~~-~~~~--~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~  185 (326)
T 2ghs_A          112 FLRDTATGVLTL-HAEL--ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSIC  185 (326)
T ss_dssp             EEEETTTCCEEE-EECS--STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEE
T ss_pred             EEEECCCCcEEE-EeeC--CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeE
Confidence            899877665321 1110  00011245889999999987665432      24555555  44432 2222223567899


Q ss_pred             ecCCCCeEEEE-cCCCcEEEEECC--CC-ee--eEEEec--CCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257          162 FSLDSEFLATT-STDGSARIWKTE--DG-VA--WTFLTR--NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (392)
Q Consensus       162 ~~~~~~~l~~~-~~d~~i~vwd~~--~~-~~--~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~  233 (392)
                      |+|+++.++.+ +.++.|.+||+.  ++ +.  ...+..  .....+..++++++|..     .++...++.|.+||. +
T Consensus       186 ~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~l-----wva~~~~~~v~~~d~-~  259 (326)
T 2ghs_A          186 FSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI-----WNARWGEGAVDRYDT-D  259 (326)
T ss_dssp             ECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE-----EEEEETTTEEEEECT-T
T ss_pred             EcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCE-----EEEEeCCCEEEEECC-C
Confidence            99999876554 556889999986  55 31  112211  12235788999999973     333334578999998 4


Q ss_pred             ceeeeeecccCCCcEEEEEC-CCCCEEEEEeCC
Q 016257          234 WNKIGHKRLLRKPASVLSIS-LDGKYLAMGSKD  265 (392)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d  265 (392)
                      ++.+..+......+++++|+ |+++.|++++..
T Consensus       260 g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          260 GNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             CCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence            66666666656679999998 888877665543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.34  E-value=5.3e-11  Score=103.83  Aligned_cols=255  Identities=12%  Similarity=-0.064  Sum_probs=164.8

Q ss_pred             eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe----------CCCcEEEEeCCCCceeecccCC--
Q 016257           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG----------VDGHLRIMHWPSLRIILDEPKA--  153 (392)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~--  153 (392)
                      +|.++|..+.+....+....       .+  .+.++||+++++++.          .++.|.+||+.+++.+.++.-+  
T Consensus        47 ~vsvID~~t~~v~~~i~vG~-------~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~  117 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAF-------LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA  117 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECT-------TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred             eEEEEECCCCeEEEEEeCCC-------CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc
Confidence            78899999888766655422       24  799999999998886          3688999999999988776432  


Q ss_pred             C-----CcEEEEEecCCCCeEEEEcC--CCcEEE--EECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCcc
Q 016257          154 H-----KSVLDMDFSLDSEFLATTST--DGSARI--WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (392)
Q Consensus       154 ~-----~~i~~i~~~~~~~~l~~~~~--d~~i~v--wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~  224 (392)
                      .     .....++++|||++++++..  +..+.+  +|+.+   +..+....  .   ....|++...    .++.+.|+
T Consensus       118 ~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~--~---~~~~p~g~~~----~~~~~~dg  185 (368)
T 1mda_H          118 PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS--C---FHIHPGAAAT----HYLGSCPA  185 (368)
T ss_dssp             CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS--C---CCCEEEETTE----EECCCCTT
T ss_pred             cccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC--c---eEEccCCCeE----EEEEcCCC
Confidence            0     23567899999999998874  356888  88876   44443221  1   2245666653    24556778


Q ss_pred             EEEEEeCCC-----ceeee----eecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce--eeeeeec------cc-
Q 016257          225 LLAVYDIST-----WNKIG----HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME--INHWSKR------LH-  286 (392)
Q Consensus       225 ~i~v~d~~~-----~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~------~~-  286 (392)
                      .+.+.|+.+     ++...    .+.....+.   . ++++..++..+. +.+.+.|..+..  ....+..      .+ 
T Consensus       186 ~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~  260 (368)
T 1mda_H          186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADN  260 (368)
T ss_dssp             SCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTT
T ss_pred             CEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccc
Confidence            888888876     43321    111122333   3 666666666666 999999997542  2222110      00 


Q ss_pred             -cCcceEEEEEeeCCCeEEEEeC---------CCeEEEEEeecCccccceeeeeeeeeeeee--ceEEEEee--ecceee
Q 016257          287 -LGTSIALVEFCPTQRVVLTASK---------EWGAMITKLTVPADWKEWQIYSLLLALFLA--SAVVFYIF--FENSDS  352 (392)
Q Consensus       287 -~~~~i~~~~~s~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~d~~i~  352 (392)
                       .......++++|+++.++.+..         ++.+.++|+...+....+.+...+.++.+.  ...++++.  .++.|.
T Consensus       261 ~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~Vs  340 (368)
T 1mda_H          261 FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLD  340 (368)
T ss_dssp             EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred             cccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEE
Confidence             0111222689999997776533         235669999887766666555555555443  23344444  389999


Q ss_pred             eecccccccccCCC
Q 016257          353 FWNFPVARNQHGGP  366 (392)
Q Consensus       353 ~W~~~~~~~~~~~p  366 (392)
                      ++|+.+++.+...|
T Consensus       341 VID~~t~kvv~~I~  354 (368)
T 1mda_H          341 IYDAASDQDQSSVE  354 (368)
T ss_dssp             EEESSSCEEEEECC
T ss_pred             EEECCCCcEEEEEE
Confidence            99999988765544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.34  E-value=1.2e-13  Score=121.84  Aligned_cols=184  Identities=15%  Similarity=0.052  Sum_probs=105.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceE-
Q 016257          123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIE-  201 (392)
Q Consensus       123 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~-  201 (392)
                      ++..+++++.|+.|+.||.++++.+.+...  +.+.+..+..++..+++++.|+.|+.||.++++.+..+..+....+. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            567899999999999999999998876654  44444445567778888889999999999988876665432211111 


Q ss_pred             EEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeee
Q 016257          202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW  281 (392)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  281 (392)
                      +..+..++.      +++++.++.++.||.++++.+..+..+.    ...++|++..+++++.|+.|+.||.++++.+..
T Consensus        86 sp~~~~~~~------v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~  155 (369)
T 2hz6_A           86 SPCRSSDGI------LYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN  155 (369)
T ss_dssp             CSCC-----------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred             CceEecCCE------EEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence            111112332      4667788999999999998876555432    234567888999999999999999999986554


Q ss_pred             eeccccCcceEEEEEeeCC---CeEEEEeCCCeEEEEEeecCcc
Q 016257          282 SKRLHLGTSIALVEFCPTQ---RVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       282 ~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                      ... +   .....+++++.   ..+++++.||.++.||...++.
T Consensus       156 ~~~-~---~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          156 ATY-F---DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             EEE-E---EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred             Eec-c---cccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence            421 1   11223333332   4677888999999999876543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.32  E-value=4.8e-10  Score=97.95  Aligned_cols=250  Identities=8%  Similarity=-0.090  Sum_probs=148.6

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC--
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT--   83 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~--   83 (392)
                      ....++++|++   .++++.....    ++.+.||.++ .+ .+..-+.......+|-..+..++++++++++++-..  
T Consensus        18 ~p~~va~~~~g---~~~v~~~~~~----~~~~~l~~~~-~g-~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~   88 (343)
T 2qe8_A           18 APGNITLTPDG---RLFLSLHQFY----QPEMQVAELT-QD-GLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQ   88 (343)
T ss_dssp             CEEEEEECTTS---CEEEEECGGG----CCSCSEEEEE-TT-EEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHH
T ss_pred             CcceEEECCCC---CEEEEeCCCC----CCceEEEEEC-CC-CeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCC
Confidence            46678888887   3444322110    1126677776 22 221111101112345678999999999876665433  


Q ss_pred             ---CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEE-EEe---CCCcEEEEeCCCCceeecccCC---
Q 016257           84 ---NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGG---VDGHLRIMHWPSLRIILDEPKA---  153 (392)
Q Consensus        84 ---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~---~dg~i~i~d~~~~~~~~~~~~~---  153 (392)
                         ++.|.+||+.+++....+.... ....+...+..+++++++..++ +..   .++.|.+||+.+++.......+   
T Consensus        89 ~~~~~~i~~~d~~tg~~~~~~~~~~-~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~  167 (343)
T 2qe8_A           89 SKSVPKLVAWDTLNNQLSRVIYLPP-PITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGI  167 (343)
T ss_dssp             HTSCCEEEEEETTTTEEEEEEECCT-TTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTT
T ss_pred             cCCCCeEEEEECCCCeEEEEEECCh-hhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcc
Confidence               5789999998776444332211 1112335678999998655554 444   5788999999877654433221   


Q ss_pred             --------------------------CCcEEEEEecCCCCeEEEEcCCC-cEEEEECC---CCe-----eeE--EEecCC
Q 016257          154 --------------------------HKSVLDMDFSLDSEFLATTSTDG-SARIWKTE---DGV-----AWT--FLTRNS  196 (392)
Q Consensus       154 --------------------------~~~i~~i~~~~~~~~l~~~~~d~-~i~vwd~~---~~~-----~~~--~~~~~~  196 (392)
                                                ...+..|+|+|+++.|+++..++ .+..++..   .+.     ...  ....+ 
T Consensus       168 ~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~-  246 (343)
T 2qe8_A          168 APEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSE-  246 (343)
T ss_dssp             SCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEE-
T ss_pred             cccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEeccc-
Confidence                                      01357899999999888877665 44444431   110     000  11111 


Q ss_pred             CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc-cCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 016257          197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVV  271 (392)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  271 (392)
                      ......++++++|..     .++...++.|.+||.++++....... .......+++.++++++++.+..+.+.+|
T Consensus       247 ~g~pdgia~d~~G~l-----~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          247 KPICDGISIDKDHNI-----YVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             CCSCSCEEECTTCCE-----EEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred             CCCCceEEECCCCCE-----EEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence            124567999999874     56667788999999855554322222 23467899999999888877655544333

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.32  E-value=3.1e-09  Score=94.04  Aligned_cols=274  Identities=11%  Similarity=0.036  Sum_probs=168.7

Q ss_pred             CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCC--CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeccc
Q 016257           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD--AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP  151 (392)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  151 (392)
                      .+..+++++.++.|..+|..+++..............+  ...+.+. ...++..+++++.++.|..+|.++++......
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            35677888888899999998887655443211100000  1222221 22245678888899999999999998775544


Q ss_pred             CCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcc----eEEEEecCCCCcceEEEEEEeCCccEEE
Q 016257          152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK----IELCRFSKDGTKPFLFCTVQRGDKALLA  227 (392)
Q Consensus       152 ~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~d~~i~  227 (392)
                      ............  +..++.++.++.+..+|.++++.+..........    ....... ++.      ++.+..++.+.
T Consensus       131 ~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~------v~~g~~~g~l~  201 (376)
T 3q7m_A          131 VAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGA------AVVGGDNGRVS  201 (376)
T ss_dssp             CSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TTE------EEECCTTTEEE
T ss_pred             CCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CCE------EEEEcCCCEEE
Confidence            332211111222  4578888889999999999998877765432110    0112222 332      56778889999


Q ss_pred             EEeCCCceeeeeecccCCC-------cEEEEECC--CCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEee
Q 016257          228 VYDISTWNKIGHKRLLRKP-------ASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (392)
Q Consensus       228 v~d~~~~~~~~~~~~~~~~-------v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  298 (392)
                      .+|.++++.+-........       +..+...|  .+..+++++.++.+..+|.++++......    ......+..  
T Consensus       202 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~----~~~~~~~~~--  275 (376)
T 3q7m_A          202 AVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE----LGSVNDFIV--  275 (376)
T ss_dssp             EEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC----CCCEEEEEE--
T ss_pred             EEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc----CCCCCCceE--
Confidence            9999998876544322100       00011111  25677888889999999999998775442    223344443  


Q ss_pred             CCCeEEEEeCCCeEEEEEeecCccccceeee----eeeeeeeeeceEEEEeeecceeeeecccccccccCC
Q 016257          299 TQRVVLTASKEWGAMITKLTVPADWKEWQIY----SLLLALFLASAVVFYIFFENSDSFWNFPVARNQHGG  365 (392)
Q Consensus       299 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~  365 (392)
                      ++..++.++.++.+..++...++.  .|...    ............++.+..++.+..+|..+|+.+...
T Consensus       276 ~~~~l~~~~~~g~l~~~d~~tG~~--~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~  344 (376)
T 3q7m_A          276 DGNRIYLVDQNDRVMALTIDGGVT--LWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQ  344 (376)
T ss_dssp             ETTEEEEEETTCCEEEEETTTCCE--EEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEECCCCcE--EEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            456788888899999998876543  34322    011122334567777778899999999998865443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.29  E-value=7.9e-09  Score=91.43  Aligned_cols=257  Identities=8%  Similarity=-0.034  Sum_probs=158.6

Q ss_pred             CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCC
Q 016257           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (392)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  153 (392)
                      ++..+++++.++.|..+|..+++..........   ....+    ..  .+..+++++.++.+..+|.++++........
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~---~~~~p----~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~  172 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE---ALSRP----VV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLD  172 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSC---CCSCC----EE--ETTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc---eEcCC----EE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCC
Confidence            456788888999999999988876554432110   01111    11  2447888888999999999999877654432


Q ss_pred             CCcE-----EEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcc---eEE---EEecC--CCCcceEEEEEEe
Q 016257          154 HKSV-----LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK---IEL---CRFSK--DGTKPFLFCTVQR  220 (392)
Q Consensus       154 ~~~i-----~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~---v~~---~~~~~--~~~~~~~~~~~~~  220 (392)
                      ....     ......  +..++.++.++.+..+|.++++.+..........   +..   +.-.|  .+..     ++.+
T Consensus       173 ~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----v~~~  245 (376)
T 3q7m_A          173 MPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGV-----VFAL  245 (376)
T ss_dssp             C-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTE-----EEEE
T ss_pred             CCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCE-----EEEE
Confidence            2111     111222  4567888889999999999998877665322100   000   00111  1222     5667


Q ss_pred             CCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCC
Q 016257          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (392)
Q Consensus       221 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  300 (392)
                      +.++.+..+|.++++.+-....  .....+..  ++..+++++.++.|..+|.++++..-...... ...+.....  .+
T Consensus       246 ~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~--~~  318 (376)
T 3q7m_A          246 AYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLL-HRLLTSPVL--YN  318 (376)
T ss_dssp             CTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTT-TSCCCCCEE--ET
T ss_pred             ecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccC-CCcccCCEE--EC
Confidence            7889999999999887644432  23344444  46688888889999999999998765543122 222333333  34


Q ss_pred             CeEEEEeCCCeEEEEEeecCccccceeeee----eeeeeeeeceEEEEeeecceeeeec
Q 016257          301 RVVLTASKEWGAMITKLTVPADWKEWQIYS----LLLALFLASAVVFYIFFENSDSFWN  355 (392)
Q Consensus       301 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~i~~W~  355 (392)
                      ..|+.++.+|.+.+++...++.  .|....    ...........++.+..++.++.++
T Consensus       319 ~~l~v~~~~g~l~~~d~~tG~~--~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          319 GNLVVGDSEGYLHWINVEDGRF--VAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCE--EEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcE--EEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence            5788889999999999876543  232221    1111223455666777788887775

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.28  E-value=3.7e-09  Score=92.83  Aligned_cols=190  Identities=14%  Similarity=0.116  Sum_probs=126.2

Q ss_pred             CeeEEEEcCCCCeEEEEeCC------CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-------
Q 016257           65 DPMTIAVNPSGDDFVCSTTN------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-------  131 (392)
Q Consensus        65 ~v~~~~~sp~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------  131 (392)
                      ....+..+|+| .++++..+      +.+.++|..+.+...+......    ....-..+.|+|+++.+++..       
T Consensus       139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~----~~~~~Yd~~~~p~~~~mvsS~wg~p~~~  213 (462)
T 2ece_A          139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRG----DQYLAYDFWWNLPNEVLVSSEWAVPNTI  213 (462)
T ss_dssp             EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCT----TCCCCCCEEEETTTTEEEECBCCCHHHH
T ss_pred             cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCC----CccccceEEECCCCCEEEEccCcCcccc
Confidence            56678889999 66666555      6899999988876655442211    112335688999999888874       


Q ss_pred             ------------CCCcEEEEeCCCCceeecccCC-C-CcEEEEEe--cCCCCeEEEEcC------CCcEEEEECCCCee-
Q 016257          132 ------------VDGHLRIMHWPSLRIILDEPKA-H-KSVLDMDF--SLDSEFLATTST------DGSARIWKTEDGVA-  188 (392)
Q Consensus       132 ------------~dg~i~i~d~~~~~~~~~~~~~-~-~~i~~i~~--~~~~~~l~~~~~------d~~i~vwd~~~~~~-  188 (392)
                                  ...+|.+||+.+++.+.++... . .....+.|  +|++++++++++      +++|.+|....++. 
T Consensus       214 ~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~  293 (462)
T 2ece_A          214 EDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN  293 (462)
T ss_dssp             TTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE
T ss_pred             ccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee
Confidence                        3689999999988766555443 1 24456655  999998877764      56787766554421 


Q ss_pred             -eEEEecCC-----------------CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC---ceeeeeecccC---
Q 016257          189 -WTFLTRNS-----------------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST---WNKIGHKRLLR---  244 (392)
Q Consensus       189 -~~~~~~~~-----------------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~---  244 (392)
                       .+.+....                 ......+.+++|++++|    ++.-..+.|.+||+..   .+.+..+....   
T Consensus       294 ~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLY----VSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~  369 (462)
T 2ece_A          294 AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLY----LSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFH  369 (462)
T ss_dssp             EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEE----EEETTTTEEEEEECSSTTSCEEEEEEECBTTTT
T ss_pred             EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEE----EEeCCCCEEEEEEecCCCCcEEEEEEEeCCeec
Confidence             11110000                 13467899999999743    5555678999999853   23443333221   


Q ss_pred             -----------CCcEEEEECCCCCEEEEEe
Q 016257          245 -----------KPASVLSISLDGKYLAMGS  263 (392)
Q Consensus       245 -----------~~v~~~~~s~~~~~l~~~~  263 (392)
                                 ..-..++++|||++|+++.
T Consensus       370 ~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          370 RADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             cccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence                       1357899999999999887

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.28  E-value=9.6e-10  Score=104.56  Aligned_cols=293  Identities=12%  Similarity=0.072  Sum_probs=181.7

Q ss_pred             CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCC----CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecc
Q 016257           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ----DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE  150 (392)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  150 (392)
                      +..|++++.++.|.-+|..+++...+..........    .......+++  ++..|++++.|+.|..+|.++++.+.+.
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            446677777788888888888766555332110000    0000112222  4568888899999999999999987665


Q ss_pred             cCC-C----CcEEE-EEecCCCCeEEEEcC------CCcEEEEECCCCeeeEEEecCCCc--------------------
Q 016257          151 PKA-H----KSVLD-MDFSLDSEFLATTST------DGSARIWKTEDGVAWTFLTRNSDE--------------------  198 (392)
Q Consensus       151 ~~~-~----~~i~~-i~~~~~~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~~~--------------------  198 (392)
                      ... .    ..+.+ ...  .+..+++++.      ++.|+.+|.++++.+..+......                    
T Consensus       155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~  232 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS  232 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred             cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence            443 1    11111 111  2345555543      689999999999988777542211                    


Q ss_pred             -----------ceEEEEecCCCCcceEEEEEEeCCcc-------------------EEEEEeCCCceeeeeecccC----
Q 016257          199 -----------KIELCRFSKDGTKPFLFCTVQRGDKA-------------------LLAVYDISTWNKIGHKRLLR----  244 (392)
Q Consensus       199 -----------~v~~~~~~~~~~~~~~~~~~~~~~d~-------------------~i~v~d~~~~~~~~~~~~~~----  244 (392)
                                 ....++++|++..     ++.+..++                   .|..+|.++++.+-.+....    
T Consensus       233 g~~~~~~~g~~~w~~~~~d~~~~~-----vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~w  307 (677)
T 1kb0_A          233 GKWWEAGGGGTMWDSMTFDAELNT-----MYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNW  307 (677)
T ss_dssp             GCHHHHCEECCCCSCEEEETTTTE-----EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred             CceeEeCCCcccccceeEcCCCCE-----EEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccc
Confidence                       0124678888775     33343332                   59999999998875544311    


Q ss_pred             -----CCcEEEEECCCC---CEEEEEeCCCcEEEEecCCceeeeeeecccc---------Ccce----------------
Q 016257          245 -----KPASVLSISLDG---KYLAMGSKDGDICVVDVKKMEINHWSKRLHL---------GTSI----------------  291 (392)
Q Consensus       245 -----~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------~~~i----------------  291 (392)
                           .....+....+|   ..++.++.+|.++++|..+++.+........         ..++                
T Consensus       308 d~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P  387 (677)
T 1kb0_A          308 DYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVP  387 (677)
T ss_dssp             CCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSS
T ss_pred             ccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECc
Confidence                 122233344477   6899999999999999999998755432110         0011                


Q ss_pred             --------EEEEEeeCCCeEEEEeCC-------------------------------------------CeEEEEEeecC
Q 016257          292 --------ALVEFCPTQRVVLTASKE-------------------------------------------WGAMITKLTVP  320 (392)
Q Consensus       292 --------~~~~~s~~~~~l~~~~~d-------------------------------------------g~i~iw~~~~~  320 (392)
                              ..++++|++.++++...+                                           |.|..||+.++
T Consensus       388 ~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG  467 (677)
T 1kb0_A          388 GPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ  467 (677)
T ss_dssp             CTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT
T ss_pred             CcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC
Confidence                    157889988877775432                                           67888888765


Q ss_pred             ccccceeeeee--e-e-eeeeeceEEEEeeecceeeeecccccccccCCCCcccccCCCCCc
Q 016257          321 ADWKEWQIYSL--L-L-ALFLASAVVFYIFFENSDSFWNFPVARNQHGGPKIESILRDPQSS  378 (392)
Q Consensus       321 ~~~~~~~~~~~--~-~-~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~p~~~~~~~~~~~~  378 (392)
                      +.  .|.....  . . ....+...++.+..|+.+++||..+|+.+........+...|..+
T Consensus       468 ~~--~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y  527 (677)
T 1kb0_A          468 KA--AWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTY  527 (677)
T ss_dssp             EE--EEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred             cE--EeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEE
Confidence            43  4544321  1 1 122345577778889999999999999876655444455555553

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.27  E-value=5.9e-09  Score=99.18  Aligned_cols=240  Identities=9%  Similarity=0.005  Sum_probs=160.2

Q ss_pred             CCCeEEEEeCCCeEEEEEEeCCccceeeccc-cCCCCCCCCCeEE-EEecCCCCEEEEEeC------CCcEEEEeCCCCc
Q 016257           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAK-KMPPLQDAGPQKC-LSFSVDGSRFAAGGV------DGHLRIMHWPSLR  145 (392)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~v~~-~~~s~~~~~l~~~~~------dg~i~i~d~~~~~  145 (392)
                      ++..|++++.|+.|..+|..+++...+.... ...   ....+.+ ...  .+..+++++.      ++.|+.+|.++++
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~---~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~  201 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQK---GSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGE  201 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCC---SSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcC---cCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCc
Confidence            4567888889999999999999876665432 100   0001110 011  2345665543      6899999999999


Q ss_pred             eeecccCCCC--------------------------------cEEEEEecCCCCeEEEEcCCC-----------------
Q 016257          146 IILDEPKAHK--------------------------------SVLDMDFSLDSEFLATTSTDG-----------------  176 (392)
Q Consensus       146 ~~~~~~~~~~--------------------------------~i~~i~~~~~~~~l~~~~~d~-----------------  176 (392)
                      .+.+......                                ....++++|++..++.++.++                 
T Consensus       202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~  281 (677)
T 1kb0_A          202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLY  281 (677)
T ss_dssp             EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred             EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCee
Confidence            8755432111                                113578899888888887664                 


Q ss_pred             --cEEEEECCCCeeeEEEecCCC--------cceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCC-
Q 016257          177 --SARIWKTEDGVAWTFLTRNSD--------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK-  245 (392)
Q Consensus       177 --~i~vwd~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~-  245 (392)
                        .|..+|.++++.+..++..+.        .....+....+|+..  -.++.++.+|.++++|.++++.+........ 
T Consensus       282 ~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~--~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~  359 (677)
T 1kb0_A          282 LASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPR--KVILHAPKNGFFFVLDRTNGKFISAKNFVPVN  359 (677)
T ss_dssp             TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEE--EEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred             eEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEe--eEEEEECCCCEEEEEECCCCCEeccccccccC
Confidence              499999999998877764321        112223333456311  1268888999999999999988754432110 


Q ss_pred             ----------Cc------------------------EEEEECCCCCEEEEEeCC--------------------------
Q 016257          246 ----------PA------------------------SVLSISLDGKYLAMGSKD--------------------------  265 (392)
Q Consensus       246 ----------~v------------------------~~~~~s~~~~~l~~~~~d--------------------------  265 (392)
                                ++                        ..++++|++.++++...+                          
T Consensus       360 ~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  439 (677)
T 1kb0_A          360 WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTG  439 (677)
T ss_dssp             SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGT
T ss_pred             cccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccc
Confidence                      00                        146889998888876432                          


Q ss_pred             -----------------CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccc
Q 016257          266 -----------------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADW  323 (392)
Q Consensus       266 -----------------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  323 (392)
                                       |.|..||+.+++..-....   ..++....+..++..++.++.||.+++||..+++..
T Consensus       440 ~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l  511 (677)
T 1kb0_A          440 WNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL  511 (677)
T ss_dssp             CCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccccccccCCCCCccEEEEEeCCCCcEEeecCC---CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence                             6799999999998766532   344555667788888999999999999999877653

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.27  E-value=4.9e-09  Score=86.51  Aligned_cols=197  Identities=11%  Similarity=0.036  Sum_probs=136.2

Q ss_pred             CeEEEEecCCCCEEEEEeC--CCcEEEEeCCCCceeecccCCCC-cEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeE
Q 016257          114 PQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT  190 (392)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~  190 (392)
                      ....+.|++++.+.++.+.  ++.|+++|+++++.+....-... ....+++.. ++..++.-.++.+.++|..+.+.+.
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~  100 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIK  100 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEE
Confidence            4589999998744444332  57999999999998776543222 234556652 2344455567899999999999999


Q ss_pred             EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC-----CCcEEEEECCCCCEEEEEeCC
Q 016257          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSKD  265 (392)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~d  265 (392)
                      ++.....   ....+++|++.     ++.+..++.|.++|.++.+.+..+....     ...+.+.|. +|+..+....+
T Consensus       101 ~i~~g~~---~g~glt~Dg~~-----l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~  171 (266)
T 2iwa_A          101 NFTHQMK---DGWGLATDGKI-----LYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQT  171 (266)
T ss_dssp             EEECCSS---SCCEEEECSSS-----EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred             EEECCCC---CeEEEEECCCE-----EEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCC
Confidence            8865411   12446678887     3444568899999999988776665322     235678887 67555555467


Q ss_pred             CcEEEEecCCceeeeeeeccc-----------cCcceEEEEEeeCCCe-EEEEeCCCeEEEEEeecC
Q 016257          266 GDICVVDVKKMEINHWSKRLH-----------LGTSIALVEFCPTQRV-VLTASKEWGAMITKLTVP  320 (392)
Q Consensus       266 g~i~iwd~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~  320 (392)
                      +.|.+.|..+++....+....           .......++|+|+++. ++++...+.+..-++...
T Consensus       172 ~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          172 DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            899999999999888775321           0135689999999874 555656788888887654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.26  E-value=2.5e-09  Score=101.90  Aligned_cols=223  Identities=10%  Similarity=0.070  Sum_probs=142.4

Q ss_pred             CCeEEEEEEeCCccceeeccccCCCC------------------------CCCCCeEEEEecCCCCEEEEEeCCCc----
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPL------------------------QDAGPQKCLSFSVDGSRFAAGGVDGH----  135 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~------------------------~~~~~v~~~~~s~~~~~l~~~~~dg~----  135 (392)
                      ++.|+.||..+++...++........                        .+......++++|++.+++.+..++.    
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            68899999999887665542110000                        00111235788898889999887763    


Q ss_pred             ---------------EEEEeCCCCceeecccCCC---------CcEEEEEecCCCC---eEEEEcCCCcEEEEECCCCee
Q 016257          136 ---------------LRIMHWPSLRIILDEPKAH---------KSVLDMDFSLDSE---FLATTSTDGSARIWKTEDGVA  188 (392)
Q Consensus       136 ---------------i~i~d~~~~~~~~~~~~~~---------~~i~~i~~~~~~~---~l~~~~~d~~i~vwd~~~~~~  188 (392)
                                     |..+|.++++.+..+...+         .+..-.....+|+   .++.++.+|.++++|.++++.
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence                           9999999999876654321         1122222223554   788899999999999999998


Q ss_pred             eEEEecCCCcc--------------------------------------eEEEEecCCCCcceEEEEE------------
Q 016257          189 WTFLTRNSDEK--------------------------------------IELCRFSKDGTKPFLFCTV------------  218 (392)
Q Consensus       189 ~~~~~~~~~~~--------------------------------------v~~~~~~~~~~~~~~~~~~------------  218 (392)
                      +..........                                      -..++++|+...+|+...-            
T Consensus       342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~  421 (689)
T 1yiq_A          342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP  421 (689)
T ss_dssp             EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC
T ss_pred             eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc
Confidence            75433211000                                      1126778877653321000            


Q ss_pred             ----------Ee------------------CCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEE
Q 016257          219 ----------QR------------------GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV  270 (392)
Q Consensus       219 ----------~~------------------~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  270 (392)
                                .+                  ..++.|..||+++++.+-....+. +...-.++..+.++++++.||.++.
T Consensus       422 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a  500 (689)
T 1yiq_A          422 KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIA  500 (689)
T ss_dssp             CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEE
T ss_pred             cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEE
Confidence                      00                  014889999999999876655433 2333355567889999999999999


Q ss_pred             EecCCceeeeeeeccccCcceEEEEEeeCCC-eEEEEeC
Q 016257          271 VDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTASK  308 (392)
Q Consensus       271 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~  308 (392)
                      ||.++++.+..+...+ ...-.-+.|..+|+ ++++.+.
T Consensus       501 ~D~~tG~~lw~~~~~~-~~~~~p~ty~~~G~qyv~~~~G  538 (689)
T 1yiq_A          501 YAADTGEKLWEQPAAS-GVMAAPVTYSVDGEQYVTFMAG  538 (689)
T ss_dssp             EETTTCCEEEEEECSS-CCCSCCEEEEETTEEEEEEEEC
T ss_pred             EECCCCccceeeeCCC-CcccCceEEEECCEEEEEEEec
Confidence            9999999987765443 33334467788888 4444443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.26  E-value=8e-11  Score=106.91  Aligned_cols=219  Identities=11%  Similarity=0.052  Sum_probs=150.8

Q ss_pred             CCCeEEEEeC-CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEe-c-CCCCEEEEEe------------------C
Q 016257           74 SGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF-S-VDGSRFAAGG------------------V  132 (392)
Q Consensus        74 ~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s-~~~~~l~~~~------------------~  132 (392)
                      ||++++.... +++|.+.|+.+.+....+..      ........+++ + |+++++++++                  .
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i------p~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~  173 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEI------PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY  173 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEEC------SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeC------CCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence            8888777654 56799999998875543321      12345788888 5 8999998884                  2


Q ss_pred             CCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCC------------------------------------
Q 016257          133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG------------------------------------  176 (392)
Q Consensus       133 dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~------------------------------------  176 (392)
                      ++.+.+.|.++.+...++.-.. ....++++|+|+++++++.+.                                    
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~  252 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  252 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             CceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence            4579999999887766654322 346678999999988887543                                    


Q ss_pred             --cEEEEECCC--Cee-eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce------------eeee
Q 016257          177 --SARIWKTED--GVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN------------KIGH  239 (392)
Q Consensus       177 --~i~vwd~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~------------~~~~  239 (392)
                        .|.+.|.++  ++. +..+....  ...++.++|||+++    ++++..+..|.++|+.+.+            ....
T Consensus       253 i~~V~VID~~~~~~~~~~~~Ipvg~--~PhGv~~sPDGk~v----~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~  326 (595)
T 1fwx_A          253 LNGVKVVDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHL----CVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  326 (595)
T ss_dssp             ETTEEEEECSGGGCCSSEEEEEEES--SCCCEEECTTSSEE----EEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred             ECcEEEEeCcccCCceeEEEEecCC--CceEEEEcCCCCEE----EEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence              477778776  444 45554332  46789999999973    5677788999999999653            2222


Q ss_pred             ecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCC----------ceeeeeeeccccCcc-----eEEEEEeeCCCeEE
Q 016257          240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK----------MEINHWSKRLHLGTS-----IALVEFCPTQRVVL  304 (392)
Q Consensus       240 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~~-----i~~~~~s~~~~~l~  304 (392)
                      . ........++|+|+|...++.-.|+.|.+||+.+          .+.+..+. .| -.+     -..+.++|||++|+
T Consensus       327 v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kid-V~-yqpGh~~~~~g~t~~~DGk~l~  403 (595)
T 1fwx_A          327 P-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLD-VH-YQPGHLKTVMGETLDATNDWLV  403 (595)
T ss_dssp             C-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEE-CS-SCEEEEEETTTTSTTCCSSEEE
T ss_pred             c-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEee-cc-cccccceeccceEeCCCCCEEE
Confidence            2 2345678899999993334455789999999987          44555443 22 111     11234579999999


Q ss_pred             EEeC
Q 016257          305 TASK  308 (392)
Q Consensus       305 ~~~~  308 (392)
                      +...
T Consensus       404 ~~Nk  407 (595)
T 1fwx_A          404 CLSK  407 (595)
T ss_dssp             EEES
T ss_pred             EcCC
Confidence            8864

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.24  E-value=2.2e-08  Score=84.04  Aligned_cols=222  Identities=8%  Similarity=-0.046  Sum_probs=142.1

Q ss_pred             CCeeEEEEcCCCCeEEEEe-CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CCCcEEEEeC
Q 016257           64 GDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHW  141 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~  141 (392)
                      ..+..++|+|++..|+.+. .++.|..++...... ......      .......+++.+++..|+.+. ..+.|.++++
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~------~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~  108 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQ------DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM  108 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECT------TCCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEEEC------CCCCccEEEEEecCCeEEEEECCCCEEEEEEc
Confidence            4578999999776666554 567899999865542 121110      124678999999766666554 4678999998


Q ss_pred             CCCceeecccCCCCcEEEEEecCCCCeEEEEcC---CCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (392)
                      ..................++++|++..|+.+..   .+.|..+++.. +....+..........+++++++..+    .+
T Consensus       109 ~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~l----yv  183 (267)
T 1npe_A          109 DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQL----CW  183 (267)
T ss_dssp             TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEE----EE
T ss_pred             CCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEE----EE
Confidence            643322212222246789999997666655543   36788888753 33333332222357899999988763    35


Q ss_pred             EeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCceeeeeeeccccCcceEEEEEe
Q 016257          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (392)
Q Consensus       219 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  297 (392)
                      +....+.|.++|............ ......++..  +..|+.+. ..+.|..+|..+++....+..+. ......+++.
T Consensus       184 ~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~  259 (267)
T 1npe_A          184 VDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIA  259 (267)
T ss_dssp             EETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEE
T ss_pred             EECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeec
Confidence            566678999999986543333322 2334566654  45555554 56889999999999887764332 2347788888


Q ss_pred             eCCC
Q 016257          298 PTQR  301 (392)
Q Consensus       298 ~~~~  301 (392)
                      |++.
T Consensus       260 ~~~~  263 (267)
T 1npe_A          260 LSQC  263 (267)
T ss_dssp             CSCC
T ss_pred             CccC
Confidence            8764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.22  E-value=1.7e-09  Score=93.71  Aligned_cols=219  Identities=12%  Similarity=-0.021  Sum_probs=143.6

Q ss_pred             CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCC
Q 016257           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (392)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  154 (392)
                      +..|..++.++.+..+|.. ++.......       ....+.++...+++. +..++.++.|..+|.+ ++.........
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~-------~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~  176 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKT-------KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTND  176 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEEC-------SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSS
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcC-------CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCC
Confidence            4567778888889999876 443333221       122345566666775 6667778999999988 77655554444


Q ss_pred             CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCc
Q 016257          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (392)
Q Consensus       155 ~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~  234 (392)
                      ..+.++...+++..++ ++  +.+..+| .+++......... ..+.++...+++.      +..++.++.+..+|. ++
T Consensus       177 ~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~-~~~~~~~~~~~g~------l~v~t~~~gl~~~~~-~g  244 (330)
T 3hxj_A          177 AITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGY-WTVTRPAISEDGT------IYVTSLDGHLYAINP-DG  244 (330)
T ss_dssp             CCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSS-CCCSCCEECTTSC------EEEEETTTEEEEECT-TS
T ss_pred             CceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCC-cceeceEECCCCe------EEEEcCCCeEEEECC-CC
Confidence            5667777777776444 44  7899999 6776665554332 3578888888876      566777788888885 44


Q ss_pred             eeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEE
Q 016257          235 NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI  314 (392)
Q Consensus       235 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  314 (392)
                      +.+.........+..+.+.+++ .|.+++.+|.|..+|. +++...... .. ...+.++...++|+ |..++.+|.+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~-~~-~~~~~~~~~d~~g~-l~~gt~~G~~~~  319 (330)
T 3hxj_A          245 TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE-TG-SWIIATPVIDENGT-IYFGTRNGKFYA  319 (330)
T ss_dssp             CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEE-CS-SCCCSCCEECTTCC-EEEECTTSCEEE
T ss_pred             CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEE-cC-CccccceEEcCCCE-EEEEcCCCeEEE
Confidence            5544444333334455666565 5666777888999996 566554442 22 45667777777776 566889999998


Q ss_pred             EEeecC
Q 016257          315 TKLTVP  320 (392)
Q Consensus       315 w~~~~~  320 (392)
                      ......
T Consensus       320 ~~~~~~  325 (330)
T 3hxj_A          320 LFNLEH  325 (330)
T ss_dssp             EEC---
T ss_pred             Eecccc
Confidence            876643

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.18  E-value=4.1e-10  Score=97.71  Aligned_cols=259  Identities=11%  Similarity=0.037  Sum_probs=156.0

Q ss_pred             EEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceee
Q 016257           69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL  148 (392)
Q Consensus        69 ~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~  148 (392)
                      +....++ .|..++.++.|..|| .+++.......       ....+.++...+++. |..++.+  +..+|. +++...
T Consensus        25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~-------~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~   91 (330)
T 3hxj_A           25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKS-------GEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKW   91 (330)
T ss_dssp             CEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCG-------GGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGG
T ss_pred             ceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEec-------CCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEE
Confidence            3344455 566667777799999 66654332211       122345666666664 5555544  888885 555544


Q ss_pred             cccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEE
Q 016257          149 DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAV  228 (392)
Q Consensus       149 ~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v  228 (392)
                      .............+.  +..+..++.++.+..+|.+ ++......... ..+.++...+++.      +..++.++.|..
T Consensus        92 ~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~-~~~~~~~~~~~g~------l~vgt~~~~l~~  161 (330)
T 3hxj_A           92 RFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKK-AIYATPIVSEDGT------IYVGSNDNYLYA  161 (330)
T ss_dssp             GSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSS-CCCSCCEECTTSC------EEEECTTSEEEE
T ss_pred             EEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCC-ceeeeeEEcCCCE------EEEEcCCCEEEE
Confidence            333222222233333  5567778888999999988 76665555432 2466677777777      577788899999


Q ss_pred             EeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeC
Q 016257          229 YDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK  308 (392)
Q Consensus       229 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  308 (392)
                      +|.. ++...........+.++...+++.+.+..   +.|..+| .+++...... .. ...+.++...++|. |..++.
T Consensus       162 ~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~-~~-~~~~~~~~~~~~g~-l~v~t~  233 (330)
T 3hxj_A          162 INPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFY-AG-YWTVTRPAISEDGT-IYVTSL  233 (330)
T ss_dssp             ECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEEC-CS-SCCCSCCEECTTSC-EEEEET
T ss_pred             ECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEc-cC-CcceeceEECCCCe-EEEEcC
Confidence            9998 76665555555567777887788755544   7799999 6666554432 22 45677888887775 555667


Q ss_pred             CCeEEEEEeecCccccceeeee---eeeeeeee-ceEEEEeeecceeeeecccccccc
Q 016257          309 EWGAMITKLTVPADWKEWQIYS---LLLALFLA-SAVVFYIFFENSDSFWNFPVARNQ  362 (392)
Q Consensus       309 dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~d~~i~~W~~~~~~~~  362 (392)
                      ++.+..++.. ..  ..|....   ........ .+.+..+..++.+..+|. .++.+
T Consensus       234 ~~gl~~~~~~-g~--~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~  287 (330)
T 3hxj_A          234 DGHLYAINPD-GT--EKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEK  287 (330)
T ss_dssp             TTEEEEECTT-SC--EEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEE
T ss_pred             CCeEEEECCC-CC--EeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEE
Confidence            7777777532 11  1232211   01111222 455666666778888885 45543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.11  E-value=1.2e-07  Score=81.76  Aligned_cols=250  Identities=10%  Similarity=-0.002  Sum_probs=151.0

Q ss_pred             eeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCC-------------CCCCCCCeEEEEecC-CC
Q 016257           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP-------------PLQDAGPQKCLSFSV-DG  124 (392)
Q Consensus        59 ~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-------------~~~~~~~v~~~~~s~-~~  124 (392)
                      +.+.-....+++|++++++++++..++.|..|+..+.... .+......             .......+..+++.+ ++
T Consensus        14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g   92 (322)
T 2fp8_A           14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN   92 (322)
T ss_dssp             EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred             cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence            4443356778999999987888888899999987654321 11100000             000013578899997 56


Q ss_pred             CEEEEEeCCCcEEEEeCCCCcee--ecccCC--CCcEEEEEecC-CCCeEEEEcC-----------------CCcEEEEE
Q 016257          125 SRFAAGGVDGHLRIMHWPSLRII--LDEPKA--HKSVLDMDFSL-DSEFLATTST-----------------DGSARIWK  182 (392)
Q Consensus       125 ~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~--~~~i~~i~~~~-~~~~l~~~~~-----------------d~~i~vwd  182 (392)
                       .|+++...+.+..+|..+++..  ......  ......+++.+ +|+..++-..                 ++.|..+|
T Consensus        93 -~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  171 (322)
T 2fp8_A           93 -QLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD  171 (322)
T ss_dssp             -EEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred             -cEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence             4555555555888887655321  111111  12478899999 8987665432                 36788888


Q ss_pred             CCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce--eeeeecccCCCcEEEEECCCCCEEE
Q 016257          183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLA  260 (392)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~  260 (392)
                      ..+++....... . .....++++|+++.+    .++....+.|.+|++....  ....+..... ...+++.++|++.+
T Consensus       172 ~~~~~~~~~~~~-~-~~p~gia~~~dg~~l----yv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~v  244 (322)
T 2fp8_A          172 PSTKETTLLLKE-L-HVPGGAEVSADSSFV----LVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV  244 (322)
T ss_dssp             TTTTEEEEEEEE-E-SCCCEEEECTTSSEE----EEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEE
T ss_pred             CCCCEEEEeccC-C-ccCcceEECCCCCEE----EEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEE
Confidence            876654332221 1 135679999999852    2444567899999987421  1111111223 67899999998766


Q ss_pred             EEeC----------CCcEEEEecCCceeeeeeecccc--CcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          261 MGSK----------DGDICVVDVKKMEINHWSKRLHL--GTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       261 ~~~~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      +...          .+.|..+|.. ++....+.....  -..++.+++ .+++++++....+.|..+++..
T Consensus       245 a~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          245 SSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             EecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            6544          4668888874 555554432210  134666766 4666666666778898888763

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.11  E-value=2e-08  Score=82.90  Aligned_cols=196  Identities=8%  Similarity=-0.015  Sum_probs=134.4

Q ss_pred             eeEEEEcCCCCeEEEEeC--CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CCCcEEEEeCC
Q 016257           66 PMTIAVNPSGDDFVCSTT--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWP  142 (392)
Q Consensus        66 v~~~~~sp~~~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~  142 (392)
                      ...+.|+|++.++++.+.  ++.|.++|+.+++.........      ......+++.  ++.|+.+. .++.+.++|.+
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~------~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~   94 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD------SYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR   94 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT------TCCEEEEEEE--TTEEEEEETTCSEEEEEETT
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC------CcceEEEEEe--CCEEEEEEecCCEEEEEECC
Confidence            579999998744444333  5789999999988665543211      1122345554  45555544 67899999999


Q ss_pred             CCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCC-c---ceEEEEecCCCCcceEEEEE
Q 016257          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-E---KIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       143 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~---~v~~~~~~~~~~~~~~~~~~  218 (392)
                      +.+.+.++......  ...+++|++.++++..++.|.++|.++.+.+..+..... .   .+..+.|. ++..     .+
T Consensus        95 t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l-----yv  166 (266)
T 2iwa_A           95 TLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV-----WA  166 (266)
T ss_dssp             TTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE-----EE
T ss_pred             CCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE-----EE
Confidence            99887766433111  233566788888777789999999999888888764321 1   35678888 5542     35


Q ss_pred             EeCCccEEEEEeCCCceeeeeeccc-------------CCCcEEEEECCCCCEEE-EEeCCCcEEEEecCCce
Q 016257          219 QRGDKALLAVYDISTWNKIGHKRLL-------------RKPASVLSISLDGKYLA-MGSKDGDICVVDVKKME  277 (392)
Q Consensus       219 ~~~~d~~i~v~d~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~  277 (392)
                      ....++.|.+.|..+++.+..+...             ......++++|+++.++ ++...+++...++...+
T Consensus       167 n~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          167 NIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             EETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             ecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence            5556789999999999887766532             13458999999987655 45567888888886543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.11  E-value=8.7e-09  Score=93.71  Aligned_cols=186  Identities=11%  Similarity=0.060  Sum_probs=131.3

Q ss_pred             CCCEEEEEeC-CCcEEEEeCCCCceee--cccCCCCcEEEEEe-c-CCCCeEEEEc------------------CCCcEE
Q 016257          123 DGSRFAAGGV-DGHLRIMHWPSLRIIL--DEPKAHKSVLDMDF-S-LDSEFLATTS------------------TDGSAR  179 (392)
Q Consensus       123 ~~~~l~~~~~-dg~i~i~d~~~~~~~~--~~~~~~~~i~~i~~-~-~~~~~l~~~~------------------~d~~i~  179 (392)
                      ||++++.... ++.|.+.|+++.+...  .+... .....+++ + |+++++++++                  .++.+.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g-~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC-CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            7888877665 4569999999988765  33322 35778887 5 9999998884                  245799


Q ss_pred             EEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCc------------------------------------
Q 016257          180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK------------------------------------  223 (392)
Q Consensus       180 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d------------------------------------  223 (392)
                      +.|..+.+...++....  ....++++|+|++.|.    ++...                                    
T Consensus       179 vID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~v----t~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~  252 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFS----TSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  252 (595)
T ss_dssp             EEETTTTEEEEEEEESS--CCCCEEECSSSSEEEE----EESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             EEECCCCeEEEEEEeCC--CccceEECCCCCEEEE----EecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence            99999998888887543  3577889999987432    22111                                    


Q ss_pred             -cEEEEEeCCC--cee-eeeecccCCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCce------------eeeeeeccc
Q 016257          224 -ALLAVYDIST--WNK-IGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKME------------INHWSKRLH  286 (392)
Q Consensus       224 -~~i~v~d~~~--~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~------------~~~~~~~~~  286 (392)
                       +.|.+.|.++  ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+            ....+.   
T Consensus       253 i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~---  328 (595)
T 1fwx_A          253 LNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE---  328 (595)
T ss_dssp             ETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB---
T ss_pred             ECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC---
Confidence             2366777776  333 223322 23456799999999877766 57889999999763            222222   


Q ss_pred             cCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          287 LGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       287 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      .......++|+|+|...++.-.|+.|..|++..
T Consensus       329 vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          329 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            156789999999995555666799999999976

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.10  E-value=3.5e-08  Score=80.40  Aligned_cols=183  Identities=9%  Similarity=0.091  Sum_probs=127.6

Q ss_pred             CeEEEEecCCCCEEEEEeCCC--cEEEEeCCCCceeecccCCCCc-EEEEEecCCCCeEEE-EcCCCcEEEEECCCCeee
Q 016257          114 PQKCLSFSVDGSRFAAGGVDG--HLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLAT-TSTDGSARIWKTEDGVAW  189 (392)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~-~~~d~~i~vwd~~~~~~~  189 (392)
                      ....+.|+ ++.+..+.+.+|  .|+++|+++++......-.... -..++..  ++.|.. .-.++.+.++|.++.+.+
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~  120 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQV  120 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEE
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEE
Confidence            45788998 666666666665  8999999999987766443321 1234443  445544 446789999999999999


Q ss_pred             EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC-----CCcEEEEECCCCCEEEEEeC
Q 016257          190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSK  264 (392)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~  264 (392)
                      .++.....    ...+++++..     ++.+..++.|.++|..+.+.+..+....     ..++.+.|. +|+..+..-.
T Consensus       121 ~ti~~~~e----G~glt~dg~~-----L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~  190 (262)
T 3nol_A          121 RSFNYDGE----GWGLTHNDQY-----LIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ  190 (262)
T ss_dssp             EEEECSSC----CCCEEECSSC-----EEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             EEEECCCC----ceEEecCCCE-----EEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence            99876432    2334466776     4555557899999999988776655421     334567776 6765555556


Q ss_pred             CCcEEEEecCCceeeeeeeccc----------cCcceEEEEEeeCCCeEEEEeCC
Q 016257          265 DGDICVVDVKKMEINHWSKRLH----------LGTSIALVEFCPTQRVVLTASKE  309 (392)
Q Consensus       265 dg~i~iwd~~~~~~~~~~~~~~----------~~~~i~~~~~s~~~~~l~~~~~d  309 (392)
                      ++.|.+.|.++++....+....          .....+.++|+|+++.|+..+..
T Consensus       191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            8899999999999887774321          02356899999998877777754

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.09  E-value=2.9e-07  Score=77.16  Aligned_cols=230  Identities=7%  Similarity=-0.112  Sum_probs=137.5

Q ss_pred             CeEEEEeCCCeEEEEEEeCCccce----eeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CCCcEEEEeCCCCceeecc
Q 016257           76 DDFVCSTTNGGCKLFEVYGGATDI----NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDE  150 (392)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~  150 (392)
                      ++|+.+.. +.|+.+++.......    .....      ....+..++|++++..|+.+. .++.|..+++.........
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~------~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~   74 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHI------PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII   74 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEE------EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecC------CCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE
Confidence            45565554 468888887654210    01100      113467899999766666554 5678999998765433222


Q ss_pred             cCCCCcEEEEEecCCCCeEEE-EcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCC--ccEEE
Q 016257          151 PKAHKSVLDMDFSLDSEFLAT-TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD--KALLA  227 (392)
Q Consensus       151 ~~~~~~i~~i~~~~~~~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--d~~i~  227 (392)
                      .........+++++++..|+. -...+.|.++++..... ..+..........++++|++..+|    ++...  .+.|.
T Consensus        75 ~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~ly----v~~~~~~~~~I~  149 (267)
T 1npe_A           75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLY----WTDWNRDNPKIE  149 (267)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEE----EEECCSSSCEEE
T ss_pred             ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEE----EEECCCCCcEEE
Confidence            222346789999997665554 45567899999864332 333222223578999999776532    22222  47888


Q ss_pred             EEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEE
Q 016257          228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA  306 (392)
Q Consensus       228 v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  306 (392)
                      .+++..................++++|++..|+.+. ..+.|.++|........... .  ......++.. ++.++++.
T Consensus       150 ~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~--~~~P~gi~~d-~~~lyva~  225 (267)
T 1npe_A          150 TSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-G--LQYPFAVTSY-GKNLYYTD  225 (267)
T ss_dssp             EEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-C--CCSEEEEEEE-TTEEEEEE
T ss_pred             EEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec-C--CCCceEEEEe-CCEEEEEE
Confidence            888764322111112234578899999887766555 45789999998655443332 1  2344566654 34444444


Q ss_pred             eCCCeEEEEEeecCc
Q 016257          307 SKEWGAMITKLTVPA  321 (392)
Q Consensus       307 ~~dg~i~iw~~~~~~  321 (392)
                      ...+.|..++...++
T Consensus       226 ~~~~~v~~~d~~~g~  240 (267)
T 1npe_A          226 WKTNSVIAMDLAISK  240 (267)
T ss_dssp             TTTTEEEEEETTTTE
T ss_pred             CCCCeEEEEeCCCCC
Confidence            456788888776443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.07  E-value=4.5e-08  Score=79.77  Aligned_cols=182  Identities=14%  Similarity=0.093  Sum_probs=126.4

Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcE--EEEEecCCCCeEEEEcCCCcEEEEECCCCeeeE
Q 016257          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV--LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT  190 (392)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i--~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~  190 (392)
                      .....+.|+ ++.+..+.+.+|.|+++|+++++..... - ....  ..+++.. ++..+..-.++.+.+||.++.+.+.
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~  130 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRER  130 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEE
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEE
Confidence            345788887 4556667777889999999999987766 2 2233  3355543 2344445578899999999999999


Q ss_pred             EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC-----CCcEEEEECCCCCEEEEEeCC
Q 016257          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSKD  265 (392)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~d  265 (392)
                      ++.....+  ..++  +++..     ++.+..++.|.++|..+.+.+..+....     ..++.+.|. +|+..+....+
T Consensus       131 ti~~~~eG--wGLt--~Dg~~-----L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s  200 (268)
T 3nok_A          131 TTRYSGEG--WGLC--YWNGK-----LVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHS  200 (268)
T ss_dssp             EEECSSCC--CCEE--EETTE-----EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTC
T ss_pred             EEeCCCce--eEEe--cCCCE-----EEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCC
Confidence            98764332  3333  56765     4555568899999999988876665422     244667776 77655555467


Q ss_pred             CcEEEEecCCceeeeeeecc-----------ccCcceEEEEEeeCCCeEEEEeC
Q 016257          266 GDICVVDVKKMEINHWSKRL-----------HLGTSIALVEFCPTQRVVLTASK  308 (392)
Q Consensus       266 g~i~iwd~~~~~~~~~~~~~-----------~~~~~i~~~~~s~~~~~l~~~~~  308 (392)
                      +.|.+.|.++++.+..+...           ....-.+.++++|+++.|+..+.
T Consensus       201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            89999999999988776432           01246789999998776666554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.06  E-value=1.4e-06  Score=84.83  Aligned_cols=243  Identities=11%  Similarity=0.053  Sum_probs=154.6

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  142 (392)
                      ...|.++...+++.+.+....+| +..|+..+.+.............-....|.++...++|.+.+ |+.+ -|.+|+..
T Consensus       214 ~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~  290 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEG  290 (795)
T ss_dssp             CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred             CCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCC
Confidence            46788888888776554433445 888887655422111110000011235799999988886554 4555 58899987


Q ss_pred             CCceeeccc-------CCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec------CCCcceEEEEecCCC
Q 016257          143 SLRIILDEP-------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR------NSDEKIELCRFSKDG  209 (392)
Q Consensus       143 ~~~~~~~~~-------~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~  209 (392)
                      +++......       -....|.++...++|. |..|+.++-|..++...+... .+..      -....|.++...+++
T Consensus       291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g  368 (795)
T 4a2l_A          291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDK  368 (795)
T ss_dssp             TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTS
T ss_pred             CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCC
Confidence            765432211       1224699999999887 445666677899987654332 2211      123368999998888


Q ss_pred             CcceEEEEEEeCCccEEEEEeCCCceeeeeec--------ccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeee
Q 016257          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKR--------LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW  281 (392)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  281 (392)
                      .      +..++.++-|..||..+++......        .....|.++...++|+.|.+|+.++-|.+||.++++....
T Consensus       369 ~------lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~  442 (795)
T 4a2l_A          369 N------LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENF  442 (795)
T ss_dssp             C------EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             C------EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence            7      5777777779999988755432211        1235788999888888677778777799999988765443


Q ss_pred             eec---cccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          282 SKR---LHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       282 ~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      ...   .. ...|.++...++|.+.+.. . +.+.+++...
T Consensus       443 ~~~~~~l~-~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~  480 (795)
T 4a2l_A          443 NQRNSQLV-NENVYAILPDGEGNLWLGT-L-SALVRFNPEQ  480 (795)
T ss_dssp             CTTTSCCS-CSCEEEEEECSSSCEEEEE-S-SCEEEEETTT
T ss_pred             ecCCCCcC-CCeeEEEEECCCCCEEEEe-c-CceeEEeCCC
Confidence            210   12 4578999988888755544 4 4577777543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.06  E-value=1.9e-08  Score=95.62  Aligned_cols=294  Identities=11%  Similarity=0.055  Sum_probs=175.1

Q ss_pred             CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCC--CC-CCe-EEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecc
Q 016257           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ--DA-GPQ-KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE  150 (392)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~--~~-~~v-~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  150 (392)
                      +..|++++.++.|.-+|..+++...+..........  .. ..+ ..+++  .+..+++++.|+.|..+|.++++.+.+.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            456777778888999998888766555322110000  00 000 11222  3557888889999999999999987655


Q ss_pred             cCCCC-cEEEEEecC--CCCeEEEEcC------CCcEEEEECCCCeeeEEEecCCCc-----------------------
Q 016257          151 PKAHK-SVLDMDFSL--DSEFLATTST------DGSARIWKTEDGVAWTFLTRNSDE-----------------------  198 (392)
Q Consensus       151 ~~~~~-~i~~i~~~~--~~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~~~-----------------------  198 (392)
                      ..... ....+.-+|  .+..++++..      ++.|+.+|.++++.+-.+......                       
T Consensus       144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w  223 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW  223 (668)
T ss_dssp             ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred             ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence            43211 001111112  1345555543      589999999999988777531100                       


Q ss_pred             -------ceEEEEecCCCCcceEEEEEEeCCcc-------------------EEEEEeCCCceeeeeeccc--C------
Q 016257          199 -------KIELCRFSKDGTKPFLFCTVQRGDKA-------------------LLAVYDISTWNKIGHKRLL--R------  244 (392)
Q Consensus       199 -------~v~~~~~~~~~~~~~~~~~~~~~~d~-------------------~i~v~d~~~~~~~~~~~~~--~------  244 (392)
                             ....++++|+...     ++.+..++                   .|..+|.++++.+-.+...  .      
T Consensus       224 ~~~~gg~~w~~~a~d~~~~~-----vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~  298 (668)
T 1kv9_A          224 KLGGGGTVWDSMAYDPELDL-----LYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTA  298 (668)
T ss_dssp             HHCEECCCCSCEEEETTTTE-----EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred             eeCCCCccccceEEcCCCCE-----EEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccC
Confidence                   0123677777665     44444444                   4999999999887555432  1      


Q ss_pred             -CCcEEEEECCCCC---EEEEEeCCCcEEEEecCCceeeeeeeccc----------cCcce-------------------
Q 016257          245 -KPASVLSISLDGK---YLAMGSKDGDICVVDVKKMEINHWSKRLH----------LGTSI-------------------  291 (392)
Q Consensus       245 -~~v~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~i-------------------  291 (392)
                       .+.....+..+|+   .++.++.+|.++++|..+++.+.......          ...++                   
T Consensus       299 ~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~  378 (668)
T 1kv9_A          299 TQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF  378 (668)
T ss_dssp             CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred             CCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCc
Confidence             2222233334665   68899999999999999999773321110          00000                   


Q ss_pred             -----EEEEEeeCCCeEEEEe------------------------------------CCCeEEEEEeecCccccceeeee
Q 016257          292 -----ALVEFCPTQRVVLTAS------------------------------------KEWGAMITKLTVPADWKEWQIYS  330 (392)
Q Consensus       292 -----~~~~~s~~~~~l~~~~------------------------------------~dg~i~iw~~~~~~~~~~~~~~~  330 (392)
                           ..++++|+...++...                                    .+|.|..||+.+++.  .|....
T Consensus       379 G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~--~W~~~~  456 (668)
T 1kv9_A          379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKA--AWKVPY  456 (668)
T ss_dssp             CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE--EEEEEE
T ss_pred             cccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcE--EEEccC
Confidence                 1267888766555421                                    237788888876543  454322


Q ss_pred             e--e--eeeeeeceEEEEeeecceeeeecccccccccCCCCcccccCCCCC
Q 016257          331 L--L--LALFLASAVVFYIFFENSDSFWNFPVARNQHGGPKIESILRDPQS  377 (392)
Q Consensus       331 ~--~--~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~p~~~~~~~~~~~  377 (392)
                      .  .  .....+.+.++++..|+.++.||..+|+.+........+...|..
T Consensus       457 ~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~  507 (668)
T 1kv9_A          457 PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMT  507 (668)
T ss_dssp             SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred             CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceE
Confidence            1  1  123345668888889999999999999877655443444444443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.04  E-value=2.2e-07  Score=75.05  Aligned_cols=194  Identities=12%  Similarity=0.141  Sum_probs=130.0

Q ss_pred             CCCeEEEEecCCCCEEEEEeCC--CcEEEEeCCCCceeecccCCCCc-EEEEEecCCCCeEEEEcCCCcEEEEECCCCee
Q 016257          112 AGPQKCLSFSVDGSRFAAGGVD--GHLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLATTSTDGSARIWKTEDGVA  188 (392)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~  188 (392)
                      ......+.|+. +.+..+.+.+  ..|+.+|+++++......-.... -..++... ++.....-.++.+.++|.++.+.
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~   97 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTP   97 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTTEE
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcE
Confidence            35677899986 5455555554  48999999999987765433321 13344442 33444455789999999999999


Q ss_pred             eEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC-----CCcEEEEECCCCCEEEEEe
Q 016257          189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGS  263 (392)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~  263 (392)
                      +.++.....+  ..+  .+++..     ++.+..++.|.++|..+.+.+..+....     ..++.+.+. +|+..+...
T Consensus        98 ~~ti~~~~~G--wgl--t~dg~~-----L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw  167 (243)
T 3mbr_X           98 RARFRYPGEG--WAL--TSDDSH-----LYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW  167 (243)
T ss_dssp             EEEEECSSCC--CEE--EECSSC-----EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             EEEEeCCCCc--eEE--eeCCCE-----EEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence            9998865432  344  456666     4555568899999999988776665422     345566765 666555555


Q ss_pred             CCCcEEEEecCCceeeeeeecc-----------ccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          264 KDGDICVVDVKKMEINHWSKRL-----------HLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       264 ~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      .+..|.+.|.++++....+...           ....-.+.++++|+++.|+..+.-- =++|.++
T Consensus       168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w-p~~~~v~  232 (243)
T 3mbr_X          168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW-PMLYEIR  232 (243)
T ss_dssp             TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC-SEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC-CcEEEEE
Confidence            6789999999999988776422           1124678999999888776666531 2444444

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.01  E-value=7.2e-07  Score=76.32  Aligned_cols=228  Identities=11%  Similarity=0.013  Sum_probs=138.4

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC--cEEEEeC
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG--HLRIMHW  141 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~i~d~  141 (392)
                      .....++|+++++++++-..++.|..||..... . ....       .......+++.++|+++++.....  .|..++.
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~-~~~~-------~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~  102 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-Q-IHAT-------VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK  102 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-E-EEEE-------CSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-E-EEEe-------CCCCceeEEEcCCCcEEEEeccCCcceEEEEcC
Confidence            568899999999866665578888888865432 1 1111       123678999999998665544322  4667777


Q ss_pred             CCCceeeccc-CCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee-eEEEec--------CCCcceEEEEecCCCCc
Q 016257          142 PSLRIILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTR--------NSDEKIELCRFSKDGTK  211 (392)
Q Consensus       142 ~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~--------~~~~~v~~~~~~~~~~~  211 (392)
                      .+++...... ........++..+++..+++-..++.|+++|...++. +.....        ..-.....+  +|++..
T Consensus       103 ~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~  180 (306)
T 2p4o_A          103 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF  180 (306)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred             CCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence            7776432211 1112334555555555455555678899999875432 111100        011124455  788875


Q ss_pred             ceEEEEEEeCCccEEEEEeCCC-cee--eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeee--eeeccc
Q 016257          212 PFLFCTVQRGDKALLAVYDIST-WNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH--WSKRLH  286 (392)
Q Consensus       212 ~~~~~~~~~~~d~~i~v~d~~~-~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~  286 (392)
                      +    .++....+.|..+|+.. ++.  ...+.. ......++++++|++.++....+.|.++|.. ++...  .+ ...
T Consensus       181 l----yv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~-~~~  253 (306)
T 2p4o_A          181 L----YVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA-EQG  253 (306)
T ss_dssp             E----EEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG-GGT
T ss_pred             E----EEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec-ccc
Confidence            3    35666778999999874 321  111111 1345568999999887777777899999975 54422  22 111


Q ss_pred             cCcceEEEEEe---eCCCeEEEEeCCC
Q 016257          287 LGTSIALVEFC---PTQRVVLTASKEW  310 (392)
Q Consensus       287 ~~~~i~~~~~s---~~~~~l~~~~~dg  310 (392)
                       ....++++|.   |+++.|+.++..+
T Consensus       254 -~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          254 -VIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             -CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             -cCCceEEEEecccCCCCEEEEECCCC
Confidence             3568999998   8877776666543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.97  E-value=1.1e-07  Score=77.57  Aligned_cols=185  Identities=11%  Similarity=0.034  Sum_probs=125.1

Q ss_pred             CCCCe--eEEEEcCCCCeEEEEeCCC--eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CCCcE
Q 016257           62 SEGDP--MTIAVNPSGDDFVCSTTNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHL  136 (392)
Q Consensus        62 h~~~v--~~~~~sp~~~~l~~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i  136 (392)
                      |....  ..+.|+ ++.++.+.+.+|  .|+++|+.+++........        .........++++.|+... .++.+
T Consensus        39 hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~--------~~~FgeGit~~g~~ly~ltw~~~~v  109 (262)
T 3nol_A           39 HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG--------KRYFGEGISDWKDKIVGLTWKNGLG  109 (262)
T ss_dssp             CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC--------TTCCEEEEEEETTEEEEEESSSSEE
T ss_pred             CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC--------CccceeEEEEeCCEEEEEEeeCCEE
Confidence            44444  788898 666666666665  8999999999866555321        1233322333455555544 58899


Q ss_pred             EEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCC-C---cceEEEEecCCCCcc
Q 016257          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-D---EKIELCRFSKDGTKP  212 (392)
Q Consensus       137 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~---~~v~~~~~~~~~~~~  212 (392)
                      .+||.++.+.+.++.-....   ..+++|++.|+.+..++.|.++|..+.+.+.++.... .   ..+..+.|. +|.. 
T Consensus       110 ~v~D~~t~~~~~ti~~~~eG---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l-  184 (262)
T 3nol_A          110 FVWNIRNLRQVRSFNYDGEG---WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI-  184 (262)
T ss_dssp             EEEETTTCCEEEEEECSSCC---CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE-
T ss_pred             EEEECccCcEEEEEECCCCc---eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE-
Confidence            99999999988766543322   2334567777777767889999999998888876432 1   124457776 5542 


Q ss_pred             eEEEEEEeCCccEEEEEeCCCceeeeeeccc------------CCCcEEEEECCCCCEEEEEeC
Q 016257          213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLL------------RKPASVLSISLDGKYLAMGSK  264 (392)
Q Consensus       213 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~------------~~~v~~~~~s~~~~~l~~~~~  264 (392)
                          .+..-.++.|.+.|.++++.+..+...            ..-.+.++++|+++.|++.+.
T Consensus       185 ----yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          185 ----FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             ----EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             ----EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence                355556889999999999887665432            134588999999888777764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.97  E-value=5.6e-07  Score=83.84  Aligned_cols=294  Identities=10%  Similarity=0.007  Sum_probs=171.2

Q ss_pred             CCeEEEEeC-CCeEEEEEE-eCCccceeeccccCCCC----CCCCCeEEEEecCCCCE----EEEEeCCCcEEEEeCCCC
Q 016257           75 GDDFVCSTT-NGGCKLFEV-YGGATDINLLAKKMPPL----QDAGPQKCLSFSVDGSR----FAAGGVDGHLRIMHWPSL  144 (392)
Q Consensus        75 ~~~l~~~~~-d~~i~iw~~-~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~----l~~~~~dg~i~i~d~~~~  144 (392)
                      +..|++++. ++.|.-+|. .+++...+.........    ........++++|.+..    +++++.|+.+..+|.+++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            445666666 777888888 77776655432211000    00001123455443444    888889999999999999


Q ss_pred             ceeecccCCCC----cEEE-EEecCCCCeEEEEc------CCCcEEEEECCCCeeeEEEecCCCcc--------------
Q 016257          145 RIILDEPKAHK----SVLD-MDFSLDSEFLATTS------TDGSARIWKTEDGVAWTFLTRNSDEK--------------  199 (392)
Q Consensus       145 ~~~~~~~~~~~----~i~~-i~~~~~~~~l~~~~------~d~~i~vwd~~~~~~~~~~~~~~~~~--------------  199 (392)
                      +.+.+......    .+.+ .... ++ .+++++      .++.|+.+|.++++.+-.+.......              
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence            98765432210    1111 1111 33 455554      37999999999999887765432110              


Q ss_pred             ----------------------e-EEEEecCCCCcceEEEEEEeCCc----------------cEEEEEeCCCceeeeee
Q 016257          200 ----------------------I-ELCRFSKDGTKPFLFCTVQRGDK----------------ALLAVYDISTWNKIGHK  240 (392)
Q Consensus       200 ----------------------v-~~~~~~~~~~~~~~~~~~~~~~d----------------~~i~v~d~~~~~~~~~~  240 (392)
                                            + ..+++.++...     ++.+..+                +.|.-+|.++++.+-.+
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~-----vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~  294 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNL-----IYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGY  294 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTE-----EEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEE
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCCCE-----EEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEe
Confidence                                  0 12345555554     2333222                48999999999887554


Q ss_pred             cccCC---------CcEEEEEC-CCC---CEEEEEeCCCcEEEEecCCceeeeeeeccc-----------cCcce-----
Q 016257          241 RLLRK---------PASVLSIS-LDG---KYLAMGSKDGDICVVDVKKMEINHWSKRLH-----------LGTSI-----  291 (392)
Q Consensus       241 ~~~~~---------~v~~~~~s-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~i-----  291 (392)
                      +....         ...-+... .+|   +.++.++.+|.++++|.++++.+.......           ...++     
T Consensus       295 q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~  374 (599)
T 1w6s_A          295 QKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEY  374 (599)
T ss_dssp             ESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGG
T ss_pred             ecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeecccc
Confidence            43221         11112222 567   567778899999999999998765443111           00111     


Q ss_pred             ---------------------EEEEEeeCCCeEEEEe---------------------------------------CCCe
Q 016257          292 ---------------------ALVEFCPTQRVVLTAS---------------------------------------KEWG  311 (392)
Q Consensus       292 ---------------------~~~~~s~~~~~l~~~~---------------------------------------~dg~  311 (392)
                                           ..++++|+..++++..                                       .+|.
T Consensus       375 ~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~  454 (599)
T 1w6s_A          375 GTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQ  454 (599)
T ss_dssp             CCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEE
T ss_pred             CCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCe
Confidence                                 2456777766555432                                       2356


Q ss_pred             EEEEEeecCccccceeeeee---eee-eeeeceEEEEeeecceeeeecccccccccCCCCcccccCCCCC
Q 016257          312 AMITKLTVPADWKEWQIYSL---LLA-LFLASAVVFYIFFENSDSFWNFPVARNQHGGPKIESILRDPQS  377 (392)
Q Consensus       312 i~iw~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~p~~~~~~~~~~~  377 (392)
                      +..||+.+++.  .|+....   ..+ ...+.+.++.+..|+.++.+|..+|+.+........+...|..
T Consensus       455 l~A~D~~tG~~--~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~  522 (599)
T 1w6s_A          455 IKAYNAITGDY--KWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMT  522 (599)
T ss_dssp             EEEECTTTCCE--EEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred             EEEEECCCCCE--EeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEE
Confidence            77777665543  4544221   111 2335678888889999999999999987665444444544544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.97  E-value=1.9e-07  Score=86.88  Aligned_cols=296  Identities=10%  Similarity=0.070  Sum_probs=169.9

Q ss_pred             CCeEEEEeC-CCeEEEEEE-eCCccceeeccccCCCCC----CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceee
Q 016257           75 GDDFVCSTT-NGGCKLFEV-YGGATDINLLAKKMPPLQ----DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL  148 (392)
Q Consensus        75 ~~~l~~~~~-d~~i~iw~~-~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~  148 (392)
                      +..+++++. ++.|.-+|. .+++...+..........    .......++.  ++..+++++.|+.+..+|.++++.+.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            445666666 778888888 787765554322100000    0000011222  35578888889999999999999876


Q ss_pred             cccCCCC-cEEEEEecC--CCCeEEEEcC------CCcEEEEECCCCeeeEEEecCCCc---------------------
Q 016257          149 DEPKAHK-SVLDMDFSL--DSEFLATTST------DGSARIWKTEDGVAWTFLTRNSDE---------------------  198 (392)
Q Consensus       149 ~~~~~~~-~i~~i~~~~--~~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~~~---------------------  198 (392)
                      +...... .-..+.-+|  .+..+++++.      ++.|+.+|.++++.+-++......                     
T Consensus       140 ~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~  219 (571)
T 2ad6_A          140 EVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGL  219 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSH
T ss_pred             EecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccccc
Confidence            5432210 000111112  1345565554      789999999999988776543211                     


Q ss_pred             ----------------ceEEEEecCCCCcceEEEEEEeC----------Cc----cEEEEEeCCCceeeeeecccC----
Q 016257          199 ----------------KIELCRFSKDGTKPFLFCTVQRG----------DK----ALLAVYDISTWNKIGHKRLLR----  244 (392)
Q Consensus       199 ----------------~v~~~~~~~~~~~~~~~~~~~~~----------~d----~~i~v~d~~~~~~~~~~~~~~----  244 (392)
                                      ....+++.++...+|   +.++.          .+    +.|..+|.++++.+-.++...    
T Consensus       220 g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy---~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~  296 (571)
T 2ad6_A          220 GTKTWEGDAWKIGGGTNWGWYAYDPKLNLFY---YGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW  296 (571)
T ss_dssp             HHHTSSTTGGGGCCCCCCSCCEEETTTTEEE---EECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred             ccccCcccceecCCCCeeeeEEEcCCCCeEE---EECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc
Confidence                            001245555544421   12221          11    369999999998875544221    


Q ss_pred             -----CCcEEEEECCCCC---EEEEEeCCCcEEEEecCCceeeeeeecccc-----------Ccce--------------
Q 016257          245 -----KPASVLSISLDGK---YLAMGSKDGDICVVDVKKMEINHWSKRLHL-----------GTSI--------------  291 (392)
Q Consensus       245 -----~~v~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~~~i--------------  291 (392)
                           ....-+...++|+   .++.++.+|.++++|..+++.+........           ..++              
T Consensus       297 d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~  376 (571)
T 2ad6_A          297 DFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGT  376 (571)
T ss_dssp             CCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEE
T ss_pred             ccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCce
Confidence                 1111122234674   577888999999999999987655432110           0111              


Q ss_pred             ------------EEEEEeeCCCeEEEEe-------------------------------------CCCeEEEEEeecCcc
Q 016257          292 ------------ALVEFCPTQRVVLTAS-------------------------------------KEWGAMITKLTVPAD  322 (392)
Q Consensus       292 ------------~~~~~s~~~~~l~~~~-------------------------------------~dg~i~iw~~~~~~~  322 (392)
                                  ..++++|+..+++...                                     .+|.+..+|+..++.
T Consensus       377 ~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~  456 (571)
T 2ad6_A          377 NICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA  456 (571)
T ss_dssp             EESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE
T ss_pred             EECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE
Confidence                        2467888877766654                                     246777777765543


Q ss_pred             ccceeeeee--eee--eeeeceEEEEeeecceeeeecccccccccCCCCcccccCCCCC
Q 016257          323 WKEWQIYSL--LLA--LFLASAVVFYIFFENSDSFWNFPVARNQHGGPKIESILRDPQS  377 (392)
Q Consensus       323 ~~~~~~~~~--~~~--~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~p~~~~~~~~~~~  377 (392)
                        .|.....  ..+  ...+...++.+..|+.++.+|..+|+.+........+...+..
T Consensus       457 --~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~  513 (571)
T 2ad6_A          457 --KWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMT  513 (571)
T ss_dssp             --EEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred             --EEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEE
Confidence              4443221  111  1223567778888999999999999987655544444444444

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.96  E-value=1.3e-05  Score=78.21  Aligned_cols=244  Identities=9%  Similarity=0.021  Sum_probs=153.7

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  142 (392)
                      ...|.++...++|.+.+ |+.+| |.+|+..+...............-....|.++...++|. |-.|+.++-|..++..
T Consensus       262 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~  338 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI  338 (795)
T ss_dssp             CSBEEEEEECTTSCEEE-EESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred             CCeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence            35699999988886544 44556 888887655422111110001111246799999999886 4556777778899876


Q ss_pred             CCceeeccc------CCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec-------CCCcceEEEEecCCC
Q 016257          143 SLRIILDEP------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-------NSDEKIELCRFSKDG  209 (392)
Q Consensus       143 ~~~~~~~~~------~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~  209 (392)
                      +........      .....|.++...++|+ |..|+.++-|..|+..+++.......       -....|.++...+++
T Consensus       339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g  417 (795)
T 4a2l_A          339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK  417 (795)
T ss_dssp             GGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT
T ss_pred             cccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence            543221111      1234699999988876 44567777799999876654332211       113468899988888


Q ss_pred             CcceEEEEEEeCCccEEEEEeCCCceeeeeec----ccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec-
Q 016257          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKR----LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR-  284 (392)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-  284 (392)
                      ..     +..++.++-|..||.++++......    .....|.++...++|.+.+.. .+ -|.+||.++++....... 
T Consensus       418 ~~-----lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~  490 (795)
T 4a2l_A          418 SL-----VYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEK  490 (795)
T ss_dssp             TE-----EEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCT
T ss_pred             CE-----EEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccc
Confidence            72     2555666669999988765432221    224578899988888765544 44 499999888765443211 


Q ss_pred             ---cccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          285 ---LHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       285 ---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                         ......|.++...++|.+.+...  +.+..|+...
T Consensus       491 ~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~  526 (795)
T 4a2l_A          491 DGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEG  526 (795)
T ss_dssp             TCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEET
T ss_pred             cccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCC
Confidence               11135789999988888665544  5677777654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.93  E-value=2.3e-07  Score=88.16  Aligned_cols=238  Identities=13%  Similarity=0.102  Sum_probs=152.3

Q ss_pred             CCeEEEEeCCCeEEEEEEeCCccceeeccccCC-CCCCC-CCeEEEEecCCCCEEEEEeC------CCcEEEEeCCCCce
Q 016257           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP-PLQDA-GPQKCLSFSVDGSRFAAGGV------DGHLRIMHWPSLRI  146 (392)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~~~~-~~v~~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~  146 (392)
                      +..+++++.|+.|..+|..+++...+....... ..... .++    .  .+..++++..      +|.|+.+|.++++.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~----v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~  190 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPR----V--VKGKVIIGNGGAEYGVRGFVSAYDADTGKL  190 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCE----E--ECCEEEEeCCCCCcCCCCEEEEEECCCCcE
Confidence            457888888999999999999876665432110 00001 111    1  1335555543      58899999999998


Q ss_pred             eecccCCC-------------------------------CcEEEEEecCCCCeEEEEcCCC-------------------
Q 016257          147 ILDEPKAH-------------------------------KSVLDMDFSLDSEFLATTSTDG-------------------  176 (392)
Q Consensus       147 ~~~~~~~~-------------------------------~~i~~i~~~~~~~~l~~~~~d~-------------------  176 (392)
                      +.++....                               .....++++|+...++.++.++                   
T Consensus       191 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~  270 (668)
T 1kv9_A          191 AWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLS  270 (668)
T ss_dssp             EEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             EEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence            76543210                               0112468888888888887765                   


Q ss_pred             cEEEEECCCCeeeEEEecCC-C-------cceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC----
Q 016257          177 SARIWKTEDGVAWTFLTRNS-D-------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR----  244 (392)
Q Consensus       177 ~i~vwd~~~~~~~~~~~~~~-~-------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~----  244 (392)
                      .|..+|.++++.+-.++..+ .       .+.....+..+++..  -.++.++.+|.++++|.++++.+.......    
T Consensus       271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~--~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~  348 (668)
T 1kv9_A          271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPR--KVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA  348 (668)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEE--EEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred             eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEE--EEEEEECCCCEEEEEECCCCCEeccccccccccc
Confidence            39999999999888776431 1       122222333355411  126788899999999999998763322111    


Q ss_pred             --------CC------------------------cEEEEECCCCCEEEEEe-----------------------------
Q 016257          245 --------KP------------------------ASVLSISLDGKYLAMGS-----------------------------  263 (392)
Q Consensus       245 --------~~------------------------v~~~~~s~~~~~l~~~~-----------------------------  263 (392)
                              .+                        -..++++|+...+++..                             
T Consensus       349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  428 (668)
T 1kv9_A          349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA  428 (668)
T ss_dssp             EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred             cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence                    00                        01267788777766421                             


Q ss_pred             -------CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccc
Q 016257          264 -------KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADW  323 (392)
Q Consensus       264 -------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  323 (392)
                             .+|.|..||+.+++..-....   ..+.....+...+.+++.++.|+.++.||...++.+
T Consensus       429 ~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          429 TDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             CCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence                   237899999999998765532   233444455667888999999999999998866553

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.89  E-value=1e-06  Score=83.79  Aligned_cols=284  Identities=11%  Similarity=0.013  Sum_probs=153.7

Q ss_pred             eecCCC-CCcceeEEEeCCCCCC---CCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC-
Q 016257            9 CGSWIK-RPENVNLVVLGKSSRA---SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-   83 (392)
Q Consensus         9 ~~~w~~-~~~~~~~~~~g~~~~~---~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~-   83 (392)
                      ++++.+ ++   .+++.|+....   ....+.-.++.+++.+.....  ... .-..+.....++++.++++.++.|+. 
T Consensus       190 ~~av~~~~g---~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~--~~~-~~~~~~~~~~~~~~~~~g~lyv~GG~~  263 (656)
T 1k3i_A          190 AAAIEPTSG---RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD--RTV-TVTKHDMFCPGISMDGNGQIVVTGGND  263 (656)
T ss_dssp             EEEEETTTT---EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC--CEE-EECSCCCSSCEEEECTTSCEEEECSSS
T ss_pred             eEEEEecCC---EEEEEecccccccccCCCCeEEEEEEeCCCCcEEe--Ccc-cCCCCCCccccccCCCCCCEEEeCCCC
Confidence            344555 44   46666654321   111233467778877655432  211 11223344556788889999999884 


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CC-----CcEEEEeCCCCceeecccC----C
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VD-----GHLRIMHWPSLRIILDEPK----A  153 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~~~----~  153 (392)
                      +..+.+||..+.+....      ..+.....-.+++..++++.++.|+ .+     ..+.+||..+.+.......    .
T Consensus       264 ~~~v~~yd~~t~~W~~~------~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~  337 (656)
T 1k3i_A          264 AKKTSLYDSSSDSWIPG------PDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPM  337 (656)
T ss_dssp             TTCEEEEEGGGTEEEEC------CCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGG
T ss_pred             CCceEEecCcCCceeEC------CCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccc
Confidence            45799999876643211      1111222224556667899988888 34     5699999987664321000    0


Q ss_pred             CCcEEEEEecCCCCeEEEEcCCC---------cEEEEECCCCeeeEEEecCC--------CcceEEEEecCCCCcceEEE
Q 016257          154 HKSVLDMDFSLDSEFLATTSTDG---------SARIWKTEDGVAWTFLTRNS--------DEKIELCRFSKDGTKPFLFC  216 (392)
Q Consensus       154 ~~~i~~i~~~~~~~~l~~~~~d~---------~i~vwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~~  216 (392)
                      ...-....+..++..++.++.+|         .+..||..+...........        ...-.++.|...+..+    
T Consensus       338 ~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i----  413 (656)
T 1k3i_A          338 LTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKI----  413 (656)
T ss_dssp             CCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEE----
T ss_pred             ccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeE----
Confidence            00000012234555555665443         46788887765443322111        0112344444433332    


Q ss_pred             EEEeCCcc-----------EEEEEeCCCceeeeee--cccC-CCcEEEEECCCCCEEEEEeCC-----------CcEEEE
Q 016257          217 TVQRGDKA-----------LLAVYDISTWNKIGHK--RLLR-KPASVLSISLDGKYLAMGSKD-----------GDICVV  271 (392)
Q Consensus       217 ~~~~~~d~-----------~i~v~d~~~~~~~~~~--~~~~-~~v~~~~~s~~~~~l~~~~~d-----------g~i~iw  271 (392)
                      ++.|+.++           .+.+||..+..-....  .... ..-.++...|+++++++|+.+           ..+.+|
T Consensus       414 ~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~y  493 (656)
T 1k3i_A          414 LTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIY  493 (656)
T ss_dssp             EEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEE
T ss_pred             EEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEE
Confidence            34555321           6888988765433221  1111 122355677899999999854           468999


Q ss_pred             ecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeC
Q 016257          272 DVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK  308 (392)
Q Consensus       272 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  308 (392)
                      |..+.+..................+.|+|++++.|+.
T Consensus       494 dp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          494 VPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            9988764432211111233345566789999999985

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.88  E-value=9.9e-07  Score=82.14  Aligned_cols=237  Identities=10%  Similarity=-0.004  Sum_probs=146.7

Q ss_pred             CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEeC------CCcEEEEeCCCCce
Q 016257           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGV------DGHLRIMHWPSLRI  146 (392)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~------dg~i~i~d~~~~~~  146 (392)
                      +..+++++.|+.+..+|..+++...+.......   ....+   .-+|  .+..+++++.      ++.|+.+|.++++.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~---~~~~~---~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~  188 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPK---VGSTL---TQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGEL  188 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGG---GTCBC---CSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCC---cccee---ccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcE
Confidence            557888888999999999888876554321100   00011   1111  1335666654      78999999999987


Q ss_pred             eecccCCCCc--------------------------------------EEEEEecCCCCeEEEEcCC-------------
Q 016257          147 ILDEPKAHKS--------------------------------------VLDMDFSLDSEFLATTSTD-------------  175 (392)
Q Consensus       147 ~~~~~~~~~~--------------------------------------i~~i~~~~~~~~l~~~~~d-------------  175 (392)
                      +.+.......                                      ...+++.++...++.++.+             
T Consensus       189 ~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~  268 (571)
T 2ad6_A          189 KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDN  268 (571)
T ss_dssp             EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred             EEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCc
Confidence            6544322110                                      0235667766677666532             


Q ss_pred             ---CcEEEEECCCCeeeEEEecCCCc--------ceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC
Q 016257          176 ---GSARIWKTEDGVAWTFLTRNSDE--------KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR  244 (392)
Q Consensus       176 ---~~i~vwd~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~  244 (392)
                         +.|..+|.++++.+-.++.....        ....+...++|+...  .++.++.+|.++++|.++++.+.......
T Consensus       269 ~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~--~v~~~~~~G~l~~lD~~tG~~~w~~~~~~  346 (571)
T 2ad6_A          269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTP--LLSHIDRNGILYTLNRENGNLIVAEKVDP  346 (571)
T ss_dssp             TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEE--EEEEECTTSEEEEEETTTCCEEEEEESST
T ss_pred             eeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEE--EEEEeCCCcEEEEEECCCCCEEeeecccC
Confidence               25999999999988777643210        111122224564111  14667889999999999998765443211


Q ss_pred             -------------CCc--------------------------EEEEECCCCCEEEEEe----------------------
Q 016257          245 -------------KPA--------------------------SVLSISLDGKYLAMGS----------------------  263 (392)
Q Consensus       245 -------------~~v--------------------------~~~~~s~~~~~l~~~~----------------------  263 (392)
                                   .++                          ..++++|+..++++.+                      
T Consensus       347 ~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g  426 (571)
T 2ad6_A          347 AVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVG  426 (571)
T ss_dssp             TCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCC
T ss_pred             CccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccc
Confidence                         011                          2357888877777654                      


Q ss_pred             ---------------CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257          264 ---------------KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       264 ---------------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                                     .+|.|..||+.+++..-.....   ..+....+...+..++.++.||.++.+|...++.
T Consensus       427 ~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          427 ATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK---FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             EEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC---CCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence                           2478999999999876655322   2333333344566778899999999999887655

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.87  E-value=2.3e-06  Score=76.82  Aligned_cols=239  Identities=5%  Similarity=-0.026  Sum_probs=140.9

Q ss_pred             CeeEEEEcC-CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC-C----cEEE
Q 016257           65 DPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-G----HLRI  138 (392)
Q Consensus        65 ~v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g----~i~i  138 (392)
                      .+..++++| ++..|+++...+.|+.+|+...... .+..       .......++|++++++|+++... +    .+..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~-------~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~  209 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYS-------GLSKVRTICWTHEADSMIITNDQNNNDRPNNYI  209 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEEC-------CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEec-------CCCCcceEEEeCCCCEEEEEeCCCCcccceEEE
Confidence            578899998 4556666666577888887665422 2211       23467899999999967666542 2    2333


Q ss_pred             EeCCCCcee--ecccCCCCcEEEEEecC-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257          139 MHWPSLRII--LDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (392)
Q Consensus       139 ~d~~~~~~~--~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (392)
                      ++. .+...  ..+. .......++++| ++.++++-..++.|..++...+................++|+|+++++   
T Consensus       210 ~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l---  284 (430)
T 3tc9_A          210 LTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA---  284 (430)
T ss_dssp             EEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE---
T ss_pred             EeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE---
Confidence            443 22211  1111 123456788999 666666666778999999986654333332222357899999999853   


Q ss_pred             EEEEeCCccEEEEEeCCC--cee--eeeeccc---------------CCCcE-EEEEC--------CCCCEEEEEeCCCc
Q 016257          216 CTVQRGDKALLAVYDIST--WNK--IGHKRLL---------------RKPAS-VLSIS--------LDGKYLAMGSKDGD  267 (392)
Q Consensus       216 ~~~~~~~d~~i~v~d~~~--~~~--~~~~~~~---------------~~~v~-~~~~s--------~~~~~l~~~~~dg~  267 (392)
                       .++....+.|..++...  ++.  +..+...               -.... .++..        ++|.+.++-...+.
T Consensus       285 -yv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~  363 (430)
T 3tc9_A          285 -YIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHC  363 (430)
T ss_dssp             -EEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTE
T ss_pred             -EEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcE
Confidence             35566778899987653  211  1111110               01122 45553        34555555556678


Q ss_pred             EEEEecCCceeeeeeec------c--c-------cCcceEEEEEeeC-CCeEEEEeCCCeEEEEEee
Q 016257          268 ICVVDVKKMEINHWSKR------L--H-------LGTSIALVEFCPT-QRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       268 i~iwd~~~~~~~~~~~~------~--~-------~~~~i~~~~~s~~-~~~l~~~~~dg~i~iw~~~  318 (392)
                      |+.++ ..++.......      +  .       .-.....++++|+ +.++++-...+.|+..+++
T Consensus       364 I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          364 IRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            99888 45555443321      0  0       0125789999994 6555555566777777653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.86  E-value=4.2e-07  Score=87.73  Aligned_cols=199  Identities=8%  Similarity=-0.011  Sum_probs=117.1

Q ss_pred             CeEEEEec-CCCCEEEEEeC-CC----cEEEEeCCCC-ceeecccCCCCcEEEEEecCCCCeEEEEcCC-----CcEEEE
Q 016257          114 PQKCLSFS-VDGSRFAAGGV-DG----HLRIMHWPSL-RIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIW  181 (392)
Q Consensus       114 ~v~~~~~s-~~~~~l~~~~~-dg----~i~i~d~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vw  181 (392)
                      .+...+|| |||++|+.+.. +|    .|+++|+.++ +.+....  ......+.|+||++.|+....|     ..|+++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~--~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV--SGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE--EEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc--cCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            57889999 99998886543 23    4999999988 6321111  1123468899999988877654     258888


Q ss_pred             ECCCCeee--EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce--e--eeeecccCCCcEEEEECCC
Q 016257          182 KTEDGVAW--TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--K--IGHKRLLRKPASVLSISLD  255 (392)
Q Consensus       182 d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~--~--~~~~~~~~~~v~~~~~s~~  255 (392)
                      ++.++...  ..+..........+.|+||++++++  .........|.++|+.++.  .  ............++.|+.+
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~--~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g  330 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCI--GSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGT  330 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEE--EEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETT
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEE--EecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeC
Confidence            88766422  2333222234568899999997432  2333456789999998752  2  2222223345555665444


Q ss_pred             CCEEEEEeCC----CcEEEEecCCc-eeee-eeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          256 GKYLAMGSKD----GDICVVDVKKM-EINH-WSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       256 ~~~l~~~~~d----g~i~iwd~~~~-~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      +.+++....+    ..|..+|+.++ +... .+.... ...+..+.+. .+.++++...++..++|-+.
T Consensus       331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~-~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~d  397 (751)
T 2xe4_A          331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSE-DVFMESIAVR-SNYLVVAGRRAGLTRIWTMM  397 (751)
T ss_dssp             TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCS-SEEEEEEEEC-SSEEEEEEEETTEEEEEEEE
T ss_pred             CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCC-CcEEEEEEEE-CCEEEEEEEeCCEEEEEEEe
Confidence            4444444333    25677777652 3222 221111 2245555554 33456677778877777655

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.84  E-value=6.1e-07  Score=86.62  Aligned_cols=195  Identities=11%  Similarity=0.029  Sum_probs=112.5

Q ss_pred             CeeEEEEc-CCCCeEEEEeC-CC----eEEEEEEeCC-ccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC----
Q 016257           65 DPMTIAVN-PSGDDFVCSTT-NG----GCKLFEVYGG-ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----  133 (392)
Q Consensus        65 ~v~~~~~s-p~~~~l~~~~~-d~----~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----  133 (392)
                      .+...+|| |||++||.+.. +|    +|+++|+.++ +......         ......++|+|||+.|+....+    
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---------~~~~~~~~WspDg~~l~y~~~d~~~~  245 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---------SGTNGEIVWGPDHTSLFYVTKDETLR  245 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---------EEECSCCEECSSTTEEEEEEECTTCC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---------cCceeeEEEecCCCEEEEEEECCCCC
Confidence            67889999 99998886543 22    4999998877 5211100         0113468899999988877665    


Q ss_pred             -CcEEEEeCCCCce--eeccc-CCCCcEEEEEecCCCCeEEEEcC---CCcEEEEECCCCe-ee--EEEecCCCcceEEE
Q 016257          134 -GHLRIMHWPSLRI--ILDEP-KAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGV-AW--TFLTRNSDEKIELC  203 (392)
Q Consensus       134 -g~i~i~d~~~~~~--~~~~~-~~~~~i~~i~~~~~~~~l~~~~~---d~~i~vwd~~~~~-~~--~~~~~~~~~~v~~~  203 (392)
                       ..|+.+++.+++.  ...+. ........+.|+|||++|+..+.   ...|+++|+.++. ..  ..+.........++
T Consensus       246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~  325 (751)
T 2xe4_A          246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDV  325 (751)
T ss_dssp             EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEE
T ss_pred             CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEE
Confidence             2588888876642  11111 22234667899999998876552   3468888987652 22  33433333344555


Q ss_pred             EecCCCCcceEEEEEEeC---CccEEEEEeCCCceeeee-ecccCC--CcEEEEECCCCCEEEEEeCCCc--EEEEec
Q 016257          204 RFSKDGTKPFLFCTVQRG---DKALLAVYDISTWNKIGH-KRLLRK--PASVLSISLDGKYLAMGSKDGD--ICVVDV  273 (392)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~---~d~~i~v~d~~~~~~~~~-~~~~~~--~v~~~~~s~~~~~l~~~~~dg~--i~iwd~  273 (392)
                      .|+. +..++   +.+..   ....|..+|+.+...... +..+..  .+..+.+. .+.++++...++.  |.++|+
T Consensus       326 ~~~~-g~~l~---~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          326 QMHG-TSHLV---ILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEET-TTEEE---EEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             eeee-CCEEE---EEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            5543 44422   22222   235788888875322122 222222  34455554 2344556666775  555665

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.84  E-value=2.1e-06  Score=80.02  Aligned_cols=296  Identities=10%  Similarity=0.012  Sum_probs=168.1

Q ss_pred             CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCC--CCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCC
Q 016257           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ--DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (392)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  153 (392)
                      ..+++++.++.|.-+|..+++...+..........  .......+++  .+..++.++.|+.|..+|.++++.+.+....
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~  146 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence            35555555444888888888876655432111000  0000011222  3557888889999999999999987654332


Q ss_pred             CC----cEE-EEEecC---CCC-eEEEEc------CCCcEEEEECCCCeeeEEEecCCCc--------------------
Q 016257          154 HK----SVL-DMDFSL---DSE-FLATTS------TDGSARIWKTEDGVAWTFLTRNSDE--------------------  198 (392)
Q Consensus       154 ~~----~i~-~i~~~~---~~~-~l~~~~------~d~~i~vwd~~~~~~~~~~~~~~~~--------------------  198 (392)
                      ..    .+. ......   +++ .+++++      .++.|+.+|.++++.+-........                    
T Consensus       147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w  226 (582)
T 1flg_A          147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW  226 (582)
T ss_dssp             CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred             CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence            10    111 111111   233 566654      3789999999999887655421100                    


Q ss_pred             --------------------ceEEEEecCCCCcceEEEEEEeC-----------C-------c----cEEEEEeCCCcee
Q 016257          199 --------------------KIELCRFSKDGTKPFLFCTVQRG-----------D-------K----ALLAVYDISTWNK  236 (392)
Q Consensus       199 --------------------~v~~~~~~~~~~~~~~~~~~~~~-----------~-------d----~~i~v~d~~~~~~  236 (392)
                                          .-..++++|+...+|   +.++.           .       |    +.|.-+|.++++.
T Consensus       227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vy---v~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~  303 (582)
T 1flg_A          227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTII---VGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV  303 (582)
T ss_dssp             CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEE---EEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred             CCccccccccccccccCCccccCCceEcCCCCEEE---EeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence                                001244555555422   22321           1       2    6899999999988


Q ss_pred             eeeecc--cC-------CCcEEEEEC-CCCC---EEEEEeCCCcEEEEecCCceeeeeeecccc-----------Ccc--
Q 016257          237 IGHKRL--LR-------KPASVLSIS-LDGK---YLAMGSKDGDICVVDVKKMEINHWSKRLHL-----------GTS--  290 (392)
Q Consensus       237 ~~~~~~--~~-------~~v~~~~~s-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~~~--  290 (392)
                      +-.++.  |.       ....-+... .+|+   .++.++.+|.++++|.++++.+........           ..+  
T Consensus       304 ~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~  383 (582)
T 1flg_A          304 KWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVE  383 (582)
T ss_dssp             EEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEE
T ss_pred             EEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeE
Confidence            755533  21       111112222 4674   788899999999999999987654422110           000  


Q ss_pred             ------------------------------eEEEEEeeCCCeEEEEe---------------------------------
Q 016257          291 ------------------------------IALVEFCPTQRVVLTAS---------------------------------  307 (392)
Q Consensus       291 ------------------------------i~~~~~s~~~~~l~~~~---------------------------------  307 (392)
                                                    -..++++|+...+++..                                 
T Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~  463 (582)
T 1flg_A          384 REGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDD  463 (582)
T ss_dssp             CTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSS
T ss_pred             ccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCC
Confidence                                          01346666655554432                                 


Q ss_pred             CCCeEEEEEeecCccccceeeeeee----eeeeeeceEEEEeeecceeeeecccccccccCCCCcccccCCCCCc
Q 016257          308 KEWGAMITKLTVPADWKEWQIYSLL----LALFLASAVVFYIFFENSDSFWNFPVARNQHGGPKIESILRDPQSS  378 (392)
Q Consensus       308 ~dg~i~iw~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~p~~~~~~~~~~~~  378 (392)
                      .+|.+..||+.+++.  .|+.....    .....+.+.++.+..|+.++.+|..+|+.+........+...|..+
T Consensus       464 ~~G~l~A~D~~tG~~--~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y  536 (582)
T 1flg_A          464 HVGSLRAMDPVSGKV--VWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITW  536 (582)
T ss_dssp             CSEEEEEECTTTCCE--EEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred             CcceEEEEECCCCCE--EEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEE
Confidence            256777787766543  45433211    1123346788888899999999999999886655544455555543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.83  E-value=2.1e-05  Score=76.52  Aligned_cols=242  Identities=12%  Similarity=0.038  Sum_probs=147.0

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~  143 (392)
                      ..|.++...+++.+.+ |+.+| +.+||..+.+..................|.++...++|. |..|+..+-|.+++..+
T Consensus       211 ~~i~~i~~d~~g~lwi-gt~~G-l~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~  287 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWI-GTSKG-LALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ  287 (781)
T ss_dssp             SSEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred             CceeEEEEcCCCCEEE-EeCCc-HheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence            5688998888886554 44555 888886654422111100000001245789999888885 55566645688899876


Q ss_pred             Cceeeccc--------------CCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe--------cCCCcceE
Q 016257          144 LRIILDEP--------------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT--------RNSDEKIE  201 (392)
Q Consensus       144 ~~~~~~~~--------------~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~--------~~~~~~v~  201 (392)
                      .+......              .....|.++...++|. |-.|+.++-|..++...........        .-....|.
T Consensus       288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~  366 (781)
T 3v9f_A          288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS  366 (781)
T ss_dssp             C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred             CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence            54321111              1234699999998886 5556666778999887554322111        11234688


Q ss_pred             EEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeee---cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCcee
Q 016257          202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI  278 (392)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  278 (392)
                      ++...+++.      +..++.++-|..||..++......   ......|.++...++|.+.+ |+.++-|..+|.++++.
T Consensus       367 ~i~~d~~g~------lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~  439 (781)
T 3v9f_A          367 SVCDDGQGK------LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF  439 (781)
T ss_dssp             EEEECTTSC------EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEE
T ss_pred             EEEEcCCCC------EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcE
Confidence            999888887      566665666888998765432211   12235688888888876554 66666699999888765


Q ss_pred             eeeeec-cccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          279 NHWSKR-LHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       279 ~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      ...... .. ...|.++...++|.+.+ |+. +.+..++...
T Consensus       440 ~~~~~~~~~-~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~  478 (781)
T 3v9f_A          440 QIIELEKNE-LLDVRVFYEDKNKKIWI-GTH-AGVFVIDLAS  478 (781)
T ss_dssp             EECCSTTTC-CCCEEEEEECTTSEEEE-EET-TEEEEEESSS
T ss_pred             EEeccCCCC-CCeEEEEEECCCCCEEE-EEC-CceEEEeCCC
Confidence            443211 12 46799998888877554 444 5677777654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.83  E-value=2.1e-05  Score=68.45  Aligned_cols=207  Identities=3%  Similarity=-0.059  Sum_probs=126.6

Q ss_pred             CCCeeEEEEcCCCCeEEEEe-CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEE-EEeCCCcEEEEe
Q 016257           63 EGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMH  140 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~i~d  140 (392)
                      ...+..++|++....|+.+. ..+.|..+++...... .+...      .......+++.+.+..|+ +-...+.|.+.+
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-~~~~~------~~~~p~glavd~~~g~ly~~d~~~~~I~~~~  144 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-EVVST------GLESPGGLAVDWVHDKLYWTDSGTSRIEVAN  144 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECS------SCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCce-EEEeC------CCCCccEEEEecCCCeEEEEcCCCCeEEEEc
Confidence            34588999998766666554 5677888887655422 11111      123457889987555554 444567899999


Q ss_pred             CCCCceeecccCCCCcEEEEEecCCCCeEEEEc-CC-CcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TD-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d-~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (392)
                      ++...........-.....++++|.+..|+.+. .. +.|..+++.. .....+....-.....++++|++..+|    +
T Consensus       145 ~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~~~~PnGla~d~~~~~lY----~  219 (349)
T 3v64_C          145 LDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRIIADTHLFWPNGLTIDYAGRRMY----W  219 (349)
T ss_dssp             TTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEESCCSSCSCEEEEEEETTTTEEE----E
T ss_pred             CCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-CCcEEEEECCCCCcceEEEeCCCCEEE----E
Confidence            875443322223334678999999666655544 34 6788888754 333333222233578999999887643    4


Q ss_pred             EeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee
Q 016257          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (392)
Q Consensus       219 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  282 (392)
                      +-...+.|..+|+..................+++ .++.+.++-...+.|..++..+++....+
T Consensus       220 aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          220 VDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             EETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence            5566789999998754332222222345567777 34445555556677888886666655444

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.82  E-value=3.2e-05  Score=66.34  Aligned_cols=230  Identities=8%  Similarity=-0.084  Sum_probs=135.4

Q ss_pred             eEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CCCcEEEEeCCC----Cceeeccc
Q 016257           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPS----LRIILDEP  151 (392)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~----~~~~~~~~  151 (392)
                      +|+.+..+ .|+..++...+......        .......++|++++..|+.+. .++.|..+++..    ........
T Consensus         3 ~ll~~~~~-~I~~i~~~~~~~~~~~~--------~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~   73 (316)
T 1ijq_A            3 YLFFTNRH-EVRKMTLDRSEYTSLIP--------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS   73 (316)
T ss_dssp             EEEEECBS-SEEEEETTSCCCEEEEC--------SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred             EEEEECCC-eEEEEECCCcceEehhc--------CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe
Confidence            45555444 48888877654322111        234678999998766665554 468899999875    22111122


Q ss_pred             CCCCcEEEEEecCCCCeE-EEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCC-ccEEEEE
Q 016257          152 KAHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-KALLAVY  229 (392)
Q Consensus       152 ~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-d~~i~v~  229 (392)
                      ..-.....+++++.+..| ++-...+.|.++++..... ..+..........++++|.+..+|    .+... .+.|...
T Consensus        74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~iavdp~~g~ly----~~d~~~~~~I~~~  148 (316)
T 1ijq_A           74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMY----WTDWGTPAKIKKG  148 (316)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEE----EEECSSSCEEEEE
T ss_pred             CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce-EEEEECCCCCcceEEeCCCCCEEE----EEccCCCCeEEEE
Confidence            222356788998755544 4546678899999865433 333322223578999999777533    23323 3789998


Q ss_pred             eCCCceeeeeecccCCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeC
Q 016257          230 DISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK  308 (392)
Q Consensus       230 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  308 (392)
                      ++............-.....++++|++..|+.+. ..+.|..+|+....................+++. .+.++++-..
T Consensus       149 ~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~  227 (316)
T 1ijq_A          149 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDII  227 (316)
T ss_dssp             ETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETT
T ss_pred             cCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECC
Confidence            8864332211222234677999999877776655 4578999998754333222211112346778885 4555556656


Q ss_pred             CCeEEEEEeecCc
Q 016257          309 EWGAMITKLTVPA  321 (392)
Q Consensus       309 dg~i~iw~~~~~~  321 (392)
                      .+.|..++...++
T Consensus       228 ~~~V~~~~~~~g~  240 (316)
T 1ijq_A          228 NEAIFSANRLTGS  240 (316)
T ss_dssp             TTEEEEEETTTCC
T ss_pred             CCeEEEEeCCCCc
Confidence            6778777754443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.82  E-value=3.1e-05  Score=67.42  Aligned_cols=236  Identities=8%  Similarity=-0.075  Sum_probs=141.1

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CCCcEEEEeCC
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWP  142 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~  142 (392)
                      +..+|.+..++ .+|+.+... .|+..++....... +.       .....+..++|.+....|+... ..+.|+.+++.
T Consensus        34 d~~~C~~~~~~-~~ll~~~~~-~I~~i~~~g~~~~~-~~-------~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~  103 (349)
T 3v64_C           34 DRRSCKALGPE-PVLLFANRI-DIRQVLPHRSEYTL-LL-------NNLENAIALDFHHRRELVFWSDVTLDRILRANLN  103 (349)
T ss_dssp             TSSCEEESSSC-CEEEEECBS-CEEEECTTSCCEEE-EE-------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCcccccccC-ceeEeeccc-ceEEEeCCCCeeEE-ee-------cCCCceEEEEEeccccEEEEEeccCCceEEEecC
Confidence            44556666663 455554444 37666665443211 11       1224578999998666666554 56789999987


Q ss_pred             CCceeecccCCCCcEEEEEecCCCCeE-EEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeC
Q 016257          143 SLRIILDEPKAHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (392)
Q Consensus       143 ~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (392)
                      .................+++++.+..| ++-...+.|.+.++..... ..+....-.....++++|.+..+|    .+..
T Consensus       104 g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~l~~P~~iavdp~~g~ly----~td~  178 (349)
T 3v64_C          104 GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIY----WTDW  178 (349)
T ss_dssp             SCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECTTCSCEEEEEEETTTTEEE----EEEC
T ss_pred             CCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EEEEeCCCCCcceEEEecCcCeEE----Eecc
Confidence            655332222233356788998855544 5555667899999865433 333322223578999999777532    3334


Q ss_pred             Cc-cEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeC
Q 016257          222 DK-ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (392)
Q Consensus       222 ~d-~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~  299 (392)
                      .. +.|..+++............-.....++++|++..|+.+. ..+.|..+|+........+ ... ......+++ .+
T Consensus       179 ~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~-~~~-~~~P~giav-~~  255 (349)
T 3v64_C          179 GNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI-SQG-LPHPFAITV-FE  255 (349)
T ss_dssp             SSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSS-CSSEEEEEE-ET
T ss_pred             CCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEE-eCC-CCCceEEEE-EC
Confidence            44 8899999875433222222234568899998777766654 4577999998764433322 222 345677888 35


Q ss_pred             CCeEEEEeCCCeEEEEEe
Q 016257          300 QRVVLTASKEWGAMITKL  317 (392)
Q Consensus       300 ~~~l~~~~~dg~i~iw~~  317 (392)
                      +.++++-...+.|...+.
T Consensus       256 ~~ly~td~~~~~V~~~~~  273 (349)
T 3v64_C          256 DSLYWTDWHTKSINSANK  273 (349)
T ss_dssp             TEEEEEETTTTEEEEEET
T ss_pred             CEEEEecCCCCeEEEEEc
Confidence            555555555677766653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.80  E-value=3.9e-06  Score=75.24  Aligned_cols=241  Identities=7%  Similarity=-0.033  Sum_probs=141.5

Q ss_pred             CCeeEEEEcCC--CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC-----cE
Q 016257           64 GDPMTIAVNPS--GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----HL  136 (392)
Q Consensus        64 ~~v~~~~~sp~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i  136 (392)
                      ..+..++|+|+  ...|+.+...+.|+.++..++... .+..       .......++++++|+ |+.+...+     .+
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~-~~~~-------~~~~P~giavd~dG~-lyVad~~~~~~~~gv  209 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD-IKTT-------NIGQCADVNFTLNGD-MVVVDDQSSDTNTGI  209 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE-EECC-------CCSCEEEEEECTTCC-EEEEECCSCTTSEEE
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE-Eeec-------CCCCccEEEECCCCC-EEEEcCCCCcccceE
Confidence            35789999985  445665555477888887665532 2211       234679999999999 55444321     13


Q ss_pred             EEEeCCCCceeecccCCCCcEEEEEecC-CCCeEEEEcCCCcEEEEECCCCeeeEEE-ecCCCcceEEEEecCCCCcceE
Q 016257          137 RIMHWPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFL-TRNSDEKIELCRFSKDGTKPFL  214 (392)
Q Consensus       137 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~  214 (392)
                      ...+...+...............++++| ++.++++-..++.|+.+|..++.....+ ..........++|+|++..+  
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~L--  287 (433)
T 4hw6_A          210 YLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWA--  287 (433)
T ss_dssp             EEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEE--
T ss_pred             EEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEE--
Confidence            3333221111000111123456788999 6665556556788999998867653333 22222234579999999853  


Q ss_pred             EEEEEeCCccEEEEEeCC--Ccee--eeeecc---------------cCCCcEEEEE---------CCCCCEEEEEeCCC
Q 016257          215 FCTVQRGDKALLAVYDIS--TWNK--IGHKRL---------------LRKPASVLSI---------SLDGKYLAMGSKDG  266 (392)
Q Consensus       215 ~~~~~~~~d~~i~v~d~~--~~~~--~~~~~~---------------~~~~v~~~~~---------s~~~~~l~~~~~dg  266 (392)
                        .++....+.|..++..  ++..  ...+..               .-.....+++         .++|.+.++-...+
T Consensus       288 --Yvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~  365 (433)
T 4hw6_A          288 --YIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSH  365 (433)
T ss_dssp             --EEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTT
T ss_pred             --EEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCC
Confidence              3556677889998765  2211  011111               0123567899         77777777766778


Q ss_pred             cEEEEecCCceeeeeeeccc---------------cCcceEEEEEe-eCCCeEEEEeCCCeEEEEEee
Q 016257          267 DICVVDVKKMEINHWSKRLH---------------LGTSIALVEFC-PTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       267 ~i~iwd~~~~~~~~~~~~~~---------------~~~~i~~~~~s-~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      .|+.++. ++........+.               .-.....++++ ++|.++++=...+.|+..+++
T Consensus       366 ~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          366 TVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            8999985 555443321100               01247889999 666666666666788777654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.80  E-value=2.2e-06  Score=69.28  Aligned_cols=182  Identities=8%  Similarity=-0.022  Sum_probs=119.8

Q ss_pred             CeeEEEEcCCCCeEEEEeCC--CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEE-EeCCCcEEEEeC
Q 016257           65 DPMTIAVNPSGDDFVCSTTN--GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHW  141 (392)
Q Consensus        65 ~v~~~~~sp~~~~l~~~~~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~i~d~  141 (392)
                      -...+.|++ +.++.+.+.+  ..|+.+|+.+++........        ...........++.|+. .-.++.+.+||.
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~--------~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~   92 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVP--------PPYFGAGIVAWRDRLIQLTWRNHEGFVYDL   92 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECC--------TTCCEEEEEEETTEEEEEESSSSEEEEEET
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCC--------CCcceeEEEEeCCEEEEEEeeCCEEEEEEC
Confidence            355888986 4455555554  48999999999866554321        12222222233445544 456899999999


Q ss_pred             CCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCC----cceEEEEecCCCCcceEEEE
Q 016257          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----EKIELCRFSKDGTKPFLFCT  217 (392)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~  217 (392)
                      ++.+.+.++...... ..+  .++++.|+.+..++.|.++|.++.+.+.++.....    ..+..+.+. ++..     .
T Consensus        93 ~tl~~~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l-----y  163 (243)
T 3mbr_X           93 ATLTPRARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL-----L  163 (243)
T ss_dssp             TTTEEEEEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE-----E
T ss_pred             CcCcEEEEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE-----E
Confidence            999988776544322 334  35677777777788999999999988888764321    134556665 4442     3


Q ss_pred             EEeCCccEEEEEeCCCceeeeeeccc-------------CCCcEEEEECCCCCEEEEEeC
Q 016257          218 VQRGDKALLAVYDISTWNKIGHKRLL-------------RKPASVLSISLDGKYLAMGSK  264 (392)
Q Consensus       218 ~~~~~d~~i~v~d~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~~  264 (392)
                      +..-.+..|.+.|.++++.+..+...             ..-.+.++++|+++.|++.+.
T Consensus       164 anvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          164 ANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            44556779999999999887665421             134588999998877766654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.80  E-value=7.1e-07  Score=72.73  Aligned_cols=179  Identities=9%  Similarity=-0.041  Sum_probs=121.3

Q ss_pred             eeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEE-EEeCCCcEEEEeCCCC
Q 016257           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWPSL  144 (392)
Q Consensus        66 v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~i~d~~~~  144 (392)
                      ...+.|+ ++.++.+.+.+|.|+++|+++++..... ...      ...-..+++.  ++.|+ ....++.+.+||.++.
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~------~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl  126 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG------NIFAEGLASD--GERLYQLTWTEGLLFTWSGMPP  126 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT------TCCEEEEEEC--SSCEEEEESSSCEEEEEETTTT
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC------CcceeEEEEe--CCEEEEEEccCCEEEEEECCcC
Confidence            3678887 3556667778889999999999876665 211      1112335553  34444 4456899999999999


Q ss_pred             ceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCC----cceEEEEecCCCCcceEEEEEEe
Q 016257          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----EKIELCRFSKDGTKPFLFCTVQR  220 (392)
Q Consensus       145 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~  220 (392)
                      +.+.++.-.... ..++  +|++.|+.+..++.|.++|.++.+.+.++.....    ..+..+.|. +|..     .+..
T Consensus       127 ~~~~ti~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~l-----yanv  197 (268)
T 3nok_A          127 QRERTTRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVI-----YANI  197 (268)
T ss_dssp             EEEEEEECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE-----EEEE
T ss_pred             cEEEEEeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEE-----EEEE
Confidence            988766543222 3333  5678888877789999999999988888764221    134567776 5542     3455


Q ss_pred             CCccEEEEEeCCCceeeeeeccc-------------CCCcEEEEECCCCCEEEEEe
Q 016257          221 GDKALLAVYDISTWNKIGHKRLL-------------RKPASVLSISLDGKYLAMGS  263 (392)
Q Consensus       221 ~~d~~i~v~d~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~  263 (392)
                      -.++.|.+.|.++++.+..+...             ..-.+.++++|+++.|++.+
T Consensus       198 w~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          198 WHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            56789999999999887655432             13568899999876655554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.79  E-value=1.4e-06  Score=75.11  Aligned_cols=184  Identities=13%  Similarity=0.064  Sum_probs=115.3

Q ss_pred             CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecc-cC------------------CCCcEEEEEecC-CCCeEEEEc
Q 016257          114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-PK------------------AHKSVLDMDFSL-DSEFLATTS  173 (392)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~------------------~~~~i~~i~~~~-~~~~l~~~~  173 (392)
                      ...+++|.+++++++++..++.|..|+..+++..... ..                  ....+..+++++ +++ |+.+.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence            3467899999987888888999999998765432111 00                  012578899998 555 55554


Q ss_pred             CCCcEEEEECCCCeeeEEEec----CCCcceEEEEecC-CCCcceEEEEEEeC-----------------CccEEEEEeC
Q 016257          174 TDGSARIWKTEDGVAWTFLTR----NSDEKIELCRFSK-DGTKPFLFCTVQRG-----------------DKALLAVYDI  231 (392)
Q Consensus       174 ~d~~i~vwd~~~~~~~~~~~~----~~~~~v~~~~~~~-~~~~~~~~~~~~~~-----------------~d~~i~v~d~  231 (392)
                      ..+.+..+|..+++. ..+..    ........+++.+ +|..     .++..                 .++.|..+|.
T Consensus        99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l-----~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIV-----YFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCE-----EEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEE-----EEECCcccccccccceehcccCCCceEEEEeC
Confidence            445588888765532 22211    1112467899999 8863     22221                 2478999998


Q ss_pred             CCceeeeeecccCCCcEEEEECCCCCEEEEE-eCCCcEEEEecCCce--eeeeeeccccCcceEEEEEeeCCCeEEEEeC
Q 016257          232 STWNKIGHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKME--INHWSKRLHLGTSIALVEFCPTQRVVLTASK  308 (392)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  308 (392)
                      .+++....... ......++++|+|+.|+++ +.++.|.+|++....  ....+.. . .+ ...+++.++|.++++...
T Consensus       173 ~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~-~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          173 STKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-I-PN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             TTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-C-SS-EEEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-C-CC-CCCeEECCCCCEEEEecC
Confidence            76654322221 2344579999999877665 456889999987531  1111111 1 33 788999999987666544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.78  E-value=2.3e-05  Score=69.19  Aligned_cols=207  Identities=3%  Similarity=-0.064  Sum_probs=126.9

Q ss_pred             CCCeeEEEEcCCCCeEEEEe-CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEE-EeCCCcEEEEe
Q 016257           63 EGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMH  140 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~i~d  140 (392)
                      ...+..++|++.+..|+.+. ..+.|+.+++...... .+...      .......+++.+.+..|+. -...+.|.+.+
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-~~~~~------~~~~p~glavd~~~g~lY~~d~~~~~I~~~~  187 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-EVVST------GLESPGGLAVDWVHDKLYWTDSGTSRIEVAN  187 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE-EEECS------SCSCCCCEEEETTTTEEEEEETTTTEEEECB
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE-EEEeC------CCCCccEEEEEeCCCeEEEEcCCCCeEEEEe
Confidence            45688999998666666544 5677888887655421 11111      1124467888875555544 44567888888


Q ss_pred             CCCCceeecccCCCCcEEEEEecCCCCeEEEEc-CC-CcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TD-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d-~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (392)
                      ++.................++++|.+..|+.+. .. +.|..+++... ....+....-.....++++|++..+|    +
T Consensus       188 ~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGlavd~~~~~lY----~  262 (386)
T 3v65_B          188 LDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMY----W  262 (386)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEEEEEEGGGTEEE----E
T ss_pred             CCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCeeeEEEeCCCCEEE----E
Confidence            765433322233334678999999776666554 33 67888887543 33333322223578999998877643    5


Q ss_pred             EeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee
Q 016257          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (392)
Q Consensus       219 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  282 (392)
                      +-...+.|..+|+..................+++ ..+.++++-...+.|..+|..+++....+
T Consensus       263 aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          263 VDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII  325 (386)
T ss_dssp             EETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence            5566789999998754332222222345567777 34445555556778888886666655554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.77  E-value=1.4e-05  Score=65.53  Aligned_cols=202  Identities=7%  Similarity=0.057  Sum_probs=129.2

Q ss_pred             eeCCCCCeeEEEEcCCCCeEE-EEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEE
Q 016257           59 FDESEGDPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (392)
Q Consensus        59 ~~~h~~~v~~~~~sp~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  137 (392)
                      +.+-.+.+..++|+|+++.|+ +...++.|...|.. ++....+..      ........+++.+++.++++.-.++.+.
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l------~g~~D~EGIa~~~~g~~~vs~E~~~~l~   94 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL------DFVKDLETIEYIGDNQFVISDERDYAIY   94 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC------SSCSSEEEEEECSTTEEEEEETTTTEEE
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec------CCCCChHHeEEeCCCEEEEEECCCCcEE
Confidence            445556799999999877555 46677777777776 443333321      1224678899999887666655677888


Q ss_pred             EEeCCCCce---eecc------cCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECC---CCeeeEEEec------CCCcc
Q 016257          138 IMHWPSLRI---ILDE------PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE---DGVAWTFLTR------NSDEK  199 (392)
Q Consensus       138 i~d~~~~~~---~~~~------~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~---~~~~~~~~~~------~~~~~  199 (392)
                      ++++.....   ....      .........++|+|.++.|+++.+.....+|.++   ....+..+..      .....
T Consensus        95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d  174 (255)
T 3qqz_A           95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD  174 (255)
T ss_dssp             EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred             EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence            988765432   1111      1122357899999998777777765555566554   1112222211      11224


Q ss_pred             eEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC---------CCcEEEEECCCCCEEEEEeCCCcEEE
Q 016257          200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---------KPASVLSISLDGKYLAMGSKDGDICV  270 (392)
Q Consensus       200 v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~dg~i~i  270 (392)
                      +.+++++|....+    ++.+.....+.++|... +.+..+....         .....++|.++|+ |+..++-+.++.
T Consensus       175 ~S~l~~dp~tg~l----liLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~  248 (255)
T 3qqz_A          175 VSGAEFNQQKNTL----LVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYR  248 (255)
T ss_dssp             CCEEEEETTTTEE----EEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEE
T ss_pred             ceeEEEcCCCCeE----EEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEE
Confidence            7899999987763    46677889999999774 4544443321         2567899999997 555577776666


Q ss_pred             Eec
Q 016257          271 VDV  273 (392)
Q Consensus       271 wd~  273 (392)
                      |.-
T Consensus       249 f~~  251 (255)
T 3qqz_A          249 FTP  251 (255)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.75  E-value=2.2e-05  Score=69.38  Aligned_cols=234  Identities=8%  Similarity=-0.091  Sum_probs=139.7

Q ss_pred             eeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEE-eCCCcEEEEeCCCC
Q 016257           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSL  144 (392)
Q Consensus        66 v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~  144 (392)
                      -.|.+..+ ..+|+.+... .|+..++........ .       .....+..++|.+.+..|+.. ...+.|+.+++...
T Consensus        79 ~~C~~~~~-~~~l~~~~~~-~I~~i~~~~~~~~~~-~-------~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~  148 (386)
T 3v65_B           79 RSCKALGP-EPVLLFANRI-DIRQVLPHRSEYTLL-L-------NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS  148 (386)
T ss_dssp             SCEEECSS-CCEEEEECBS-CEEEECTTSCCCEEE-E-------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CeECCccc-cceeEeecCc-cceeeccCCCcEEEE-e-------cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence            34555444 3355554443 477777655432211 1       123467899999866666554 45678999998766


Q ss_pred             ceeecccCCCCcEEEEEecCCCCeE-EEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCc
Q 016257          145 RIILDEPKAHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (392)
Q Consensus       145 ~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (392)
                      ...............+++++.+..| ++-...+.|.+.++..... ..+....-.....++++|.+..+|    ++....
T Consensus       149 ~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~P~giavdp~~g~ly----~td~~~  223 (386)
T 3v65_B          149 NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIY----WTDWGN  223 (386)
T ss_dssp             CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-EEEECSSCSCEEEEEEETTTTEEE----EEECSS
T ss_pred             CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-EEeecCCCCCCcEEEEEcCCCeEE----EeccCC
Confidence            5433222233345678888855554 4555567888888864433 333322223578999999877633    333334


Q ss_pred             -cEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCC
Q 016257          224 -ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (392)
Q Consensus       224 -~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  301 (392)
                       +.|..+++............-.....++++|++..|+.+. ..+.|..+|+........+ ... ......+++ ..+.
T Consensus       224 ~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~-~~~-~~~P~giav-~~~~  300 (386)
T 3v65_B          224 TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI-SQG-LPHPFAITV-FEDS  300 (386)
T ss_dssp             SCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEE-CSS-CSSEEEEEE-ETTE
T ss_pred             CCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEE-ECC-CCCceEEEE-ECCE
Confidence             7899999875433222222234568899998777666654 4577999998754433332 222 345678888 4555


Q ss_pred             eEEEEeCCCeEEEEEe
Q 016257          302 VVLTASKEWGAMITKL  317 (392)
Q Consensus       302 ~l~~~~~dg~i~iw~~  317 (392)
                      ++++-...+.|..++.
T Consensus       301 ly~td~~~~~V~~~~~  316 (386)
T 3v65_B          301 LYWTDWHTKSINSANK  316 (386)
T ss_dssp             EEEEETTTTEEEEEET
T ss_pred             EEEeeCCCCeEEEEEC
Confidence            5556656677776663

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.73  E-value=3.2e-06  Score=78.75  Aligned_cols=244  Identities=10%  Similarity=0.031  Sum_probs=147.2

Q ss_pred             EEEcCCCCe----EEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeE-EEEecCCCCEEEEEe------CCCcEE
Q 016257           69 IAVNPSGDD----FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGG------VDGHLR  137 (392)
Q Consensus        69 ~~~sp~~~~----l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~------~dg~i~  137 (392)
                      ++++|.+..    |+.++.|+.+.-+|..+++...+.......   ....+. .... .++ .+++++      .++.|+
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~---~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~  185 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIK---VGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLT  185 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGG---GTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEE
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCC---ccceeecCCEE-ECC-EEEEEecccccCCCCeEE
Confidence            445444444    888888999999999888876554321100   000111 0011 134 555554      378999


Q ss_pred             EEeCCCCceeecccCCCCc-------------------------------------E-EEEEecCCCCeEEEEcCC----
Q 016257          138 IMHWPSLRIILDEPKAHKS-------------------------------------V-LDMDFSLDSEFLATTSTD----  175 (392)
Q Consensus       138 i~d~~~~~~~~~~~~~~~~-------------------------------------i-~~i~~~~~~~~l~~~~~d----  175 (392)
                      .+|.++++.+.+.......                                     + ..+++.++..+++.+..+    
T Consensus       186 A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~  265 (599)
T 1w6s_A          186 AYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPW  265 (599)
T ss_dssp             EEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCS
T ss_pred             EEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccc
Confidence            9999999886544322110                                     0 134566777777777655    


Q ss_pred             ------------CcEEEEECCCCeeeEEEecCCCc--------ceEEEEec-CCCCcceEEEEEEeCCccEEEEEeCCCc
Q 016257          176 ------------GSARIWKTEDGVAWTFLTRNSDE--------KIELCRFS-KDGTKPFLFCTVQRGDKALLAVYDISTW  234 (392)
Q Consensus       176 ------------~~i~vwd~~~~~~~~~~~~~~~~--------~v~~~~~~-~~~~~~~~~~~~~~~~d~~i~v~d~~~~  234 (392)
                                  +.|..+|.++++.+-.++..+..        ...-+... .+|+..  -.++.++.+|.++++|.+++
T Consensus       266 ~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~--~~v~~~~~~G~l~~lD~~tG  343 (599)
T 1w6s_A          266 NETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKAR--KLLTHPDRNGIVYTLDRTDG  343 (599)
T ss_dssp             CGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEE--EEEEEECTTSEEEEEETTTC
T ss_pred             cCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEE--EEEEEECCCcEEEEEECCCC
Confidence                        37999999999988777654321        01112222 455321  11566889999999999999


Q ss_pred             eeeeeecccC-------------CC--------------------------cEEEEECCCCCEEEEEe------------
Q 016257          235 NKIGHKRLLR-------------KP--------------------------ASVLSISLDGKYLAMGS------------  263 (392)
Q Consensus       235 ~~~~~~~~~~-------------~~--------------------------v~~~~~s~~~~~l~~~~------------  263 (392)
                      +.+.......             .+                          -..++++|+..++++..            
T Consensus       344 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~  423 (599)
T 1w6s_A          344 ALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFML  423 (599)
T ss_dssp             CEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCC
T ss_pred             CEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccc
Confidence            8765433211             00                          12356777766665431            


Q ss_pred             ---------------------------CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEE
Q 016257          264 ---------------------------KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (392)
Q Consensus       264 ---------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  316 (392)
                                                 .+|.|.-||+.+++.+-.....   .+...-.....+.+++.++.||.++.+|
T Consensus       424 ~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagg~vf~gt~dg~l~A~D  500 (599)
T 1w6s_A          424 PYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARD  500 (599)
T ss_dssp             CCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             cccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC---CCccCcceEecCCEEEEECCCCeEEEEE
Confidence                                       3467899999998876554322   1222112334567788899999999999


Q ss_pred             eecCcc
Q 016257          317 LTVPAD  322 (392)
Q Consensus       317 ~~~~~~  322 (392)
                      .++++.
T Consensus       501 ~~tG~~  506 (599)
T 1w6s_A          501 SDTGDL  506 (599)
T ss_dssp             TTTCCE
T ss_pred             CCCCCE
Confidence            887765

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.72  E-value=2.6e-05  Score=75.88  Aligned_cols=243  Identities=11%  Similarity=0.046  Sum_probs=147.1

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccc---cCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK---KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~  139 (392)
                      ...|.++...++|. |..|+.++-|..++.............   ....+ ....|.++...++|. |..|+.++-|..+
T Consensus       312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~v~~i~~d~~g~-lWigt~~~Gl~~~  388 (781)
T 3v9f_A          312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSL-SNKVVSSVCDDGQGK-LWIGTDGGGINVF  388 (781)
T ss_dssp             SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCC-SSSCEEEEEECTTSC-EEEEEBSSCEEEE
T ss_pred             CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCC-CCcceEEEEEcCCCC-EEEEeCCCcEEEE
Confidence            45799999988886 555665555888886654322111000   00111 235789999888876 4556656668899


Q ss_pred             eCCCCceeecc---cCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe-cCCCcceEEEEecCCCCcceEE
Q 016257          140 HWPSLRIILDE---PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLF  215 (392)
Q Consensus       140 d~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~  215 (392)
                      +..+++...-.   ......|.++...+++.+.+ |+.++-+..+|.++++...... ......|.++...+++.     
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-----  462 (781)
T 3v9f_A          389 ENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-----  462 (781)
T ss_dssp             ETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-----
T ss_pred             ECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-----
Confidence            97654332111   11234789998888776544 6665678999987665432211 11234688888888876     


Q ss_pred             EEEEeCCccEEEEEeCCCceeeeeeccc-----CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee-ccccCc
Q 016257          216 CTVQRGDKALLAVYDISTWNKIGHKRLL-----RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK-RLHLGT  289 (392)
Q Consensus       216 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~  289 (392)
                       +..++. +-|..||..+++........     ...|.++...++|.+.+ |+.++-|..||.++++...... .+-...
T Consensus       463 -lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~  539 (781)
T 3v9f_A          463 -IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSN  539 (781)
T ss_dssp             -EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCS
T ss_pred             -EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCC
Confidence             344544 45889998875543222111     35788999998887655 4443348889987776544321 111145


Q ss_pred             ceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          290 SIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       290 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      .|.++...++|.+.++. .+|.+..|+..
T Consensus       540 ~i~~i~~d~~g~lWi~T-~~Glv~~~d~~  567 (781)
T 3v9f_A          540 TINQIYRSSKGQMWLAT-GEGLVCFPSAR  567 (781)
T ss_dssp             CEEEEEECTTSCEEEEE-TTEEEEESCTT
T ss_pred             eeEEEEECCCCCEEEEE-CCCceEEECCC
Confidence            78999988888765544 45543666543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.72  E-value=2.4e-06  Score=81.23  Aligned_cols=247  Identities=12%  Similarity=0.102  Sum_probs=136.4

Q ss_pred             eEEEEcC-CCCeEEEEeCCC-----------eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC-C
Q 016257           67 MTIAVNP-SGDDFVCSTTNG-----------GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-D  133 (392)
Q Consensus        67 ~~~~~sp-~~~~l~~~~~d~-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d  133 (392)
                      ...++.| +++.++.|+.+.           .+.+||..+++....... .   ..+.....++++..+++.++.|+. +
T Consensus       189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~-~---~~~~~~~~~~~~~~~g~lyv~GG~~~  264 (656)
T 1k3i_A          189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT-V---TKHDMFCPGISMDGNGQIVVTGGNDA  264 (656)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE-E---CSCCCSSCEEEECTTSCEEEECSSST
T ss_pred             eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc-C---CCCCCccccccCCCCCCEEEeCCCCC
Confidence            3567777 888888887542           577888877653221111 0   012233456788889999999884 4


Q ss_pred             CcEEEEeCCCCceeecccCCCC-cEEEEEecCCCCeEEEEc-CC-----CcEEEEECCCCeeeEEEecCCCcce----EE
Q 016257          134 GHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTS-TD-----GSARIWKTEDGVAWTFLTRNSDEKI----EL  202 (392)
Q Consensus       134 g~i~i~d~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~-~d-----~~i~vwd~~~~~~~~~~~~~~~~~v----~~  202 (392)
                      ..+.+||..+.+.......... .-.+++..++++.++.|+ .+     ..+.+||..+++-... ......+.    ..
T Consensus       265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~-~~~~~~p~~~~~~~  343 (656)
T 1k3i_A          265 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL-PNAKVNPMLTADKQ  343 (656)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE-TTSCSGGGCCCCTT
T ss_pred             CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC-CCcccccccccccc
Confidence            6899999987654332111111 223455667899999888 34     4689999987654332 10000000    00


Q ss_pred             EEecCCCCcceEEE-----EEEeCCccEEEEEeCCCceeeeeeccc---------CCCcEEEEEC-CCCCEEEEEeCCC-
Q 016257          203 CRFSKDGTKPFLFC-----TVQRGDKALLAVYDISTWNKIGHKRLL---------RKPASVLSIS-LDGKYLAMGSKDG-  266 (392)
Q Consensus       203 ~~~~~~~~~~~~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~---------~~~v~~~~~s-~~~~~l~~~~~dg-  266 (392)
                      ..+..++.. +++-     ....+....+..||..+..-.......         ...-.++.+. .+++++++|+.++ 
T Consensus       344 ~~~~~~~~i-yv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~  422 (656)
T 1k3i_A          344 GLYRSDNHA-WLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY  422 (656)
T ss_dssp             GGGTTTCSC-CEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred             ceeecCCce-EEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC
Confidence            111222221 1100     111122346788888765433222111         1123444454 3778888887542 


Q ss_pred             ----------cEEEEecCCceeeeee-eccccCcceEEEEEeeCCCeEEEEeCC-----------CeEEEEEeec
Q 016257          267 ----------DICVVDVKKMEINHWS-KRLHLGTSIALVEFCPTQRVVLTASKE-----------WGAMITKLTV  319 (392)
Q Consensus       267 ----------~i~iwd~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~d-----------g~i~iw~~~~  319 (392)
                                .|.+||..+.+..... ...+....-.++...|++++++.|+.+           ..+.+||...
T Consensus       423 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t  497 (656)
T 1k3i_A          423 QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ  497 (656)
T ss_dssp             SSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred             CCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence                      5788888876544332 111102222345667899999999854           4678888764

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.71  E-value=6.8e-06  Score=70.20  Aligned_cols=194  Identities=13%  Similarity=0.022  Sum_probs=118.9

Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCC--cEEEEECCCCeeeE
Q 016257          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG--SARIWKTEDGVAWT  190 (392)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~--~i~vwd~~~~~~~~  190 (392)
                      .....++|+++++++++-..++.|..+|.+.. ... ..........++++++++++++.....  .|..+|..+++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~-~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQI-HATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEE-EEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEE-EEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            35678999999986666667889999997653 222 222234688999999998666553322  46777777776543


Q ss_pred             EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee-eeee-------c--ccCCCcEEEEECCCCCEEE
Q 016257          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-IGHK-------R--LLRKPASVLSISLDGKYLA  260 (392)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-~~~~-------~--~~~~~v~~~~~s~~~~~l~  260 (392)
                      ............++..+++..     +++...++.|..+|...++. +...       .  ..-.....+  +|+++.|+
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~-----~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ly  182 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQY-----LTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLY  182 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEE-----EEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEE
T ss_pred             EEeCCCccccCcccccCCCcE-----EEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEE
Confidence            332222223345555554432     34555678999999875421 1100       0  111233445  78887776


Q ss_pred             EEe-CCCcEEEEecCC-cee--eeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          261 MGS-KDGDICVVDVKK-MEI--NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       261 ~~~-~dg~i~iwd~~~-~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      ++. ..+.|..|++.. ++.  ...+..   ......++++++|+++++....+.|.+++..
T Consensus       183 v~d~~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          183 VSNTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             EEETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             EEeCCCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence            655 567899999875 332  111111   2345678999999887777777888888754

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.69  E-value=0.00011  Score=63.19  Aligned_cols=278  Identities=13%  Similarity=0.063  Sum_probs=146.0

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ...+.++.|.+++   .+++.|..       +.  ++.-...+........   ........+.++.|++ +..++ ++.
T Consensus        35 ~~~~~~v~~~~~~---~~~~~G~~-------g~--i~~s~DgG~tW~~~~~---~~~~~~~~~~~i~~~~-~~~~~-~g~   97 (327)
T 2xbg_A           35 TATILDMSFIDRH---HGWLVGVN-------AT--LMETRDGGQTWEPRTL---VLDHSDYRFNSVSFQG-NEGWI-VGE   97 (327)
T ss_dssp             SSCEEEEEESSSS---CEEEEETT-------TE--EEEESSTTSSCEECCC---CCSCCCCEEEEEEEET-TEEEE-EEE
T ss_pred             CCcEEEEEECCCC---cEEEEcCC-------Ce--EEEeCCCCCCCeECCC---CCCCCCccEEEEEecC-CeEEE-EEC
Confidence            4568888887654   23444432       11  4444433332211100   0112244688999986 44444 455


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeec-ccCCCCcEEEEEe
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMDF  162 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~i~~  162 (392)
                      .+.|  +....+..........   ....+.+..+.+.+++..++++ .++.|.. ..+.++.-.. .......+..+.+
T Consensus        98 ~g~i--~~S~DgG~tW~~~~~~---~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~  170 (327)
T 2xbg_A           98 PPIM--LHTTDGGQSWSQIPLD---PKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNR  170 (327)
T ss_dssp             TTEE--EEESSTTSSCEECCCC---TTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEE
T ss_pred             CCeE--EEECCCCCCceECccc---cCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEE
Confidence            6633  3343332222221110   0122456778887777666554 4665432 2222332111 1233447889999


Q ss_pred             cCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc
Q 016257          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (392)
Q Consensus       163 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~  242 (392)
                      .+++.+++.+.. +.+..-+-..++.-..+.......+..+++.+++.      +...+.++.+.+.+...++.-.....
T Consensus       171 ~~~~~~~~~g~~-G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~------~~~~~~~G~~~~s~~D~G~tW~~~~~  243 (327)
T 2xbg_A          171 SPSGEYVAVSSR-GSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR------LWMIVNGGKIAFSDPDNSENWGELLS  243 (327)
T ss_dssp             CTTSCEEEEETT-SSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSC------EEEEETTTEEEEEETTEEEEECCCBC
T ss_pred             cCCCcEEEEECC-CcEEEEeCCCCCceeECCCCCCCccceeEECCCCC------EEEEeCCceEEEecCCCCCeeEeccC
Confidence            998887776654 55444321113333333333344688999999886      34555677777764332333222221


Q ss_pred             ----cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec--cccCcceEEEEEeeCCCeEEEEeCCCeEEEEE
Q 016257          243 ----LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR--LHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (392)
Q Consensus       243 ----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  316 (392)
                          ....+..+.+.+++..++++. +|.| ++..+.++.-..+..  .. ...+.++.|.++++ +++++.+|.|.-++
T Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~-~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          244 PLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKV-PSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             TTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTS-SSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             CcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCC-CCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence                123578899998887777665 6766 444555543332221  12 35678899986655 66667788765543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.68  E-value=3.1e-05  Score=63.47  Aligned_cols=204  Identities=9%  Similarity=0.030  Sum_probs=125.5

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d   84 (392)
                      ..+..++|+|++..  |.+....        .-.|+.++..+...     ....+.+ ......+++.+++.++++.-.+
T Consensus        27 ~~lSGla~~~~~~~--L~aV~d~--------~~~I~~ld~~g~v~-----~~i~l~g-~~D~EGIa~~~~g~~~vs~E~~   90 (255)
T 3qqz_A           27 NNISSLTWSAQSNT--LFSTINK--------PAAIVEMTTNGDLI-----RTIPLDF-VKDLETIEYIGDNQFVISDERD   90 (255)
T ss_dssp             SCEEEEEEETTTTE--EEEEEET--------TEEEEEEETTCCEE-----EEEECSS-CSSEEEEEECSTTEEEEEETTT
T ss_pred             cCcceeEEeCCCCE--EEEEECC--------CCeEEEEeCCCCEE-----EEEecCC-CCChHHeEEeCCCEEEEEECCC
Confidence            45889999998655  3332222        23477777653221     1222333 3568899999988776766677


Q ss_pred             CeEEEEEEeCCccceeeccccC--CCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC---Cceeecc-------cC
Q 016257           85 GGCKLFEVYGGATDINLLAKKM--PPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS---LRIILDE-------PK  152 (392)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~-------~~  152 (392)
                      +.+.++++..............  ...........++|+|+++.|+++.+.....+|.+..   .......       ..
T Consensus        91 ~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~  170 (255)
T 3qqz_A           91 YAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQF  170 (255)
T ss_dssp             TEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTC
T ss_pred             CcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccc
Confidence            8899999876553111111111  1123456789999999998888877665556665531   1111111       11


Q ss_pred             CCCcEEEEEecCC-CCeEEEEcCCCcEEEEECCCCeeeEEEecCCC--------cceEEEEecCCCCcceEEEEEEeCCc
Q 016257          153 AHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSD--------EKIELCRFSKDGTKPFLFCTVQRGDK  223 (392)
Q Consensus       153 ~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (392)
                      ....+.+++++|. +++++.+..++.+..+|.+ ++.+..+.....        .....|+|.++|+      +...++.
T Consensus       171 ~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~------lyIvsE~  243 (255)
T 3qqz_A          171 TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN------IYIVSEP  243 (255)
T ss_dssp             CSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC------EEEEETT
T ss_pred             ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC------EEEEcCC
Confidence            2235789999995 4566667777889999975 556555543321        2568999999997      4555666


Q ss_pred             cEEEEEeC
Q 016257          224 ALLAVYDI  231 (392)
Q Consensus       224 ~~i~v~d~  231 (392)
                      +.++.+..
T Consensus       244 n~~y~f~~  251 (255)
T 3qqz_A          244 NRFYRFTP  251 (255)
T ss_dssp             TEEEEEEC
T ss_pred             ceEEEEEe
Confidence            77777654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.65  E-value=0.00015  Score=62.13  Aligned_cols=208  Identities=8%  Similarity=-0.080  Sum_probs=125.2

Q ss_pred             CCCeeEEEEcCCCCeEEEEe-CCCeEEEEEEeCC---ccceeeccccCCCCCCCCCeEEEEecCCCCEEEEE-eCCCcEE
Q 016257           63 EGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGG---ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLR  137 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~  137 (392)
                      ...+..++|++.+..|+.+. .++.|..+++...   .....+...      .......+++.+.+..|+.+ ...+.|.
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~------~~~~p~glavd~~~~~ly~~d~~~~~I~  102 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR------DIQAPDGLAVDWIHSNIYWTDSVLGTVS  102 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS------SCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC------CCCCcCEEEEeecCCeEEEEECCCCEEE
Confidence            45688999998776666554 5678988887652   111111110      11345788998755555444 5678899


Q ss_pred             EEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCC--CcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD--GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (392)
Q Consensus       138 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (392)
                      +.+++.................++++|.+..|+.+...  +.|...++. ++....+....-.....+++++++..+   
T Consensus       103 ~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~l---  178 (316)
T 1ijq_A          103 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRL---  178 (316)
T ss_dssp             EEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEE---
T ss_pred             EEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEE---
Confidence            99987543322222233467899999977666555432  678888875 433333332223357899999988763   


Q ss_pred             EEEEeCCccEEEEEeCCCceeeeeecc--cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee
Q 016257          216 CTVQRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (392)
Q Consensus       216 ~~~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  282 (392)
                       .++-...+.|..+|+...........  .......+++. .+.++++-...+.|..+|..+++....+
T Consensus       179 -Y~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          179 -YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             -EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             -EEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence             25556678999999975332211111  12345677774 3445555556678888887777655444

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.65  E-value=2.1e-05  Score=73.30  Aligned_cols=242  Identities=13%  Similarity=0.076  Sum_probs=144.3

Q ss_pred             CCeEEEEeCCCeEEEEEEeCCccceeeccccCC-CCC-CCCCeEEEEecCCCC-EEEEEe------CCCcEEEEeCCCCc
Q 016257           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP-PLQ-DAGPQKCLSFSVDGS-RFAAGG------VDGHLRIMHWPSLR  145 (392)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~~-~~~~v~~~~~s~~~~-~l~~~~------~dg~i~i~d~~~~~  145 (392)
                      +..++.++.++.|.-+|..+++...+....... ... ...++. ..=..+++ .+++++      .++.|+.+|.++++
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v-~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~  195 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTI-VKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE  195 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEE-EECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEE-eCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence            457788889999999999998876554322100 000 011111 10011233 566654      37899999999998


Q ss_pred             eeecccCCCC-----------------------------------------cEEEEEecCCCCeEEEEcC----------
Q 016257          146 IILDEPKAHK-----------------------------------------SVLDMDFSLDSEFLATTST----------  174 (392)
Q Consensus       146 ~~~~~~~~~~-----------------------------------------~i~~i~~~~~~~~l~~~~~----------  174 (392)
                      .+........                                         .-..++++|+..+++.+..          
T Consensus       196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r  275 (582)
T 1flg_A          196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR  275 (582)
T ss_dssp             EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred             EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence            7654322100                                         0123456676677776552          


Q ss_pred             ----------C----CcEEEEECCCCeeeEEEecCCCc-----ceEE-EEec---CCCCcceEEEEEEeCCccEEEEEeC
Q 016257          175 ----------D----GSARIWKTEDGVAWTFLTRNSDE-----KIEL-CRFS---KDGTKPFLFCTVQRGDKALLAVYDI  231 (392)
Q Consensus       175 ----------d----~~i~vwd~~~~~~~~~~~~~~~~-----~v~~-~~~~---~~~~~~~~~~~~~~~~d~~i~v~d~  231 (392)
                                |    +.|..+|.++++.+-.++..+..     .+.. +.+.   .+|+..  -.++.++.+|.++++|.
T Consensus       276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~--~~v~~~~~~G~l~~lD~  353 (582)
T 1flg_A          276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIV--KATAHADRNGFFYVVDR  353 (582)
T ss_dssp             SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEE--EEEEEECTTSEEEEEET
T ss_pred             ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEE--EEEEEECCCceEEEEEC
Confidence                      2    57999999999998877643210     0111 1122   355421  12677889999999999


Q ss_pred             CCceeeeeecccC-------------CC--------------------------------cEEEEECCCCCEEEEEe---
Q 016257          232 STWNKIGHKRLLR-------------KP--------------------------------ASVLSISLDGKYLAMGS---  263 (392)
Q Consensus       232 ~~~~~~~~~~~~~-------------~~--------------------------------v~~~~~s~~~~~l~~~~---  263 (392)
                      ++++.+.......             .+                                -..++++|+...+++..   
T Consensus       354 ~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~  433 (582)
T 1flg_A          354 SNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHW  433 (582)
T ss_dssp             TTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECE
T ss_pred             CCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhc
Confidence            9988764433221             00                                01346677665555432   


Q ss_pred             ------------------------------CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEE
Q 016257          264 ------------------------------KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAM  313 (392)
Q Consensus       264 ------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  313 (392)
                                                    .+|.|..||+.+++..-.....   .++..-.....+.+++.++.||.++
T Consensus       434 ~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~g~~dg~l~  510 (582)
T 1flg_A          434 KEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFK  510 (582)
T ss_dssp             EEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEE
T ss_pred             ceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC---CCCcccceEeCCCEEEEECCCCcEE
Confidence                                          2578999999999876554322   2222222233566788899999999


Q ss_pred             EEEeecCcc
Q 016257          314 ITKLTVPAD  322 (392)
Q Consensus       314 iw~~~~~~~  322 (392)
                      .+|.++++.
T Consensus       511 A~D~~tG~~  519 (582)
T 1flg_A          511 AFDAKSGKE  519 (582)
T ss_dssp             EEETTTCCE
T ss_pred             EEECCCCCE
Confidence            999887765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.63  E-value=0.00013  Score=64.64  Aligned_cols=232  Identities=9%  Similarity=-0.059  Sum_probs=137.9

Q ss_pred             eEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CCCcEEEEeCCCC----ceeeccc
Q 016257           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSL----RIILDEP  151 (392)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~----~~~~~~~  151 (392)
                      +|+.+.. ..|+..++.........        .....+..++|++.+..|+... ..+.|+.+++...    .......
T Consensus        85 ~ll~~~~-~~I~~i~l~~~~~~~~~--------~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~  155 (400)
T 3p5b_L           85 YLFFTNR-HEVRKMTLDRSEYTSLI--------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS  155 (400)
T ss_dssp             EEEEEET-TEEEEECTTSCSCEEEE--------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC
T ss_pred             eeEEecc-ceeEEEccCCcceeEec--------cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe
Confidence            5555444 55887777655422211        1235788999998666666654 4678888888652    1222222


Q ss_pred             CCCCcEEEEEecCCCC-eEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEe
Q 016257          152 KAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (392)
Q Consensus       152 ~~~~~i~~i~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d  230 (392)
                      ........+++.+.++ ++++-...+.|.+.+++.......+... ......++++|.+..+|   ..-.+..+.|...+
T Consensus       156 ~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~-~~~P~~iavdp~~g~ly---~td~~~~~~I~~~~  231 (400)
T 3p5b_L          156 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN-GSKPRAIVVDPVHGFMY---WTDWGTPAKIKKGG  231 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECS-SCCEEEEEEETTTTEEE---EEECSSSCCEEEEE
T ss_pred             CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCC-CCCcceEEEecccCeEE---EEeCCCCCEEEEEe
Confidence            2334678899998544 4455556788999998755443333322 33578999999877533   12223347899999


Q ss_pred             CCCceeeeeecccCCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC
Q 016257          231 ISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE  309 (392)
Q Consensus       231 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  309 (392)
                      +............-.....+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...
T Consensus       232 ~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~  310 (400)
T 3p5b_L          232 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIIN  310 (400)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSS
T ss_pred             CCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCC
Confidence            875433322232235678999999887777665 4578999998765443333211112345677763 34455555566


Q ss_pred             CeEEEEEeecCcc
Q 016257          310 WGAMITKLTVPAD  322 (392)
Q Consensus       310 g~i~iw~~~~~~~  322 (392)
                      +.|..++...+..
T Consensus       311 ~~V~~~~~~~G~~  323 (400)
T 3p5b_L          311 EAIFSANRLTGSD  323 (400)
T ss_dssp             CSEEEEESSSCCC
T ss_pred             CeEEEEEcCCCCc
Confidence            7777776444433

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.58  E-value=2.7e-05  Score=66.30  Aligned_cols=189  Identities=11%  Similarity=0.156  Sum_probs=121.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCC----CC---eEEEEc-C--CCcEEEEECC-CCeeeEE
Q 016257          123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD----SE---FLATTS-T--DGSARIWKTE-DGVAWTF  191 (392)
Q Consensus       123 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~----~~---~l~~~~-~--d~~i~vwd~~-~~~~~~~  191 (392)
                      ...+++.....+-+.+||+ +++.+..+..  +.+..+..-|+    ++   ++++.. .  +++|.+|++. ....+..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            3446666667788999999 7887766543  45666666552    32   223333 3  5789999773 2223444


Q ss_pred             Eec---C--CC-cceEEEEe--cCCCCcceEEEEEEeCCccEEEEEeCC-------CceeeeeecccCCCcEEEEECCCC
Q 016257          192 LTR---N--SD-EKIELCRF--SKDGTKPFLFCTVQRGDKALLAVYDIS-------TWNKIGHKRLLRKPASVLSISLDG  256 (392)
Q Consensus       192 ~~~---~--~~-~~v~~~~~--~~~~~~~~~~~~~~~~~d~~i~v~d~~-------~~~~~~~~~~~~~~v~~~~~s~~~  256 (392)
                      +..   +  .. ..+..+++  +|.....+   ++....++.+..|++.       +.+.++.+.. ...+..+...+..
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~y---afV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~  191 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYY---AMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEY  191 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEE---EEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTT
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEE---EEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCC
Confidence            421   1  11 35677777  66544322   5677777999999883       3345555554 4578888999999


Q ss_pred             CEEEEEeCCCcEEEEecC-----CceeeeeeeccccCcceEEEEEe--eCCC-eEEEEe-CCCeEEEEEee
Q 016257          257 KYLAMGSKDGDICVVDVK-----KMEINHWSKRLHLGTSIALVEFC--PTQR-VVLTAS-KEWGAMITKLT  318 (392)
Q Consensus       257 ~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~i~~~~~s--~~~~-~l~~~~-~dg~i~iw~~~  318 (392)
                      ..|+.+-++.-|..++.+     +++.+......+....+..|++-  ++++ +|++++ .+++..+|+..
T Consensus       192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            999999998767777755     34454443334434578999984  4555 566555 67799999986

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.52  E-value=0.0001  Score=63.16  Aligned_cols=207  Identities=8%  Similarity=-0.094  Sum_probs=126.5

Q ss_pred             CCeeEEEEcCCCCeEEEE-eCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEE-EEeCCCcEEEEeC
Q 016257           64 GDPMTIAVNPSGDDFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMHW  141 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~i~d~  141 (392)
                      ..+.+++|++.+..|+.+ ...+.|..++.............      .-.....+++.+.+..|+ +-...+.|.++++
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~------~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~  108 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS------GLLSPDGLACDWLGEKLYWTDSETNRIEVSNL  108 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE------CCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC------CCCCccEEEEEcCCCeEEEEECCCCEEEEEEC
Confidence            357789999866655544 45677888887655321111111      113457888887554554 4445678999998


Q ss_pred             CCCceeecccCCCCcEEEEEecCCCCeEEEEc--CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEE
Q 016257          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (392)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (392)
                      +.................++++|.+..|+.+.  ..+.|...++.. +....+....-.....+++++++..+    .++
T Consensus       109 dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Pnglavd~~~~~l----Y~a  183 (318)
T 3sov_A          109 DGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKL----YWA  183 (318)
T ss_dssp             TSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEE----EEE
T ss_pred             CCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccEEEEeccCCEE----EEE
Confidence            65433222223334678999999766666555  357788888753 33333322222357899999987763    355


Q ss_pred             eCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee
Q 016257          220 RGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (392)
Q Consensus       220 ~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  282 (392)
                      -...+.|..+|+..................+++.. +.++.+-...+.|..++..+++....+
T Consensus       184 D~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          184 DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             ETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             ECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEE
Confidence            66778999999875333222222234456777753 344455556678999998777655544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.50  E-value=0.00012  Score=65.86  Aligned_cols=246  Identities=8%  Similarity=-0.040  Sum_probs=141.7

Q ss_pred             CeeEEEEcC-CCCeEEEEeC-CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEe-------cCCCCEEEEEeCCC-
Q 016257           65 DPMTIAVNP-SGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF-------SVDGSRFAAGGVDG-  134 (392)
Q Consensus        65 ~v~~~~~sp-~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~~~~~l~~~~~dg-  134 (392)
                      ....|+|+| +...|+.+.. .+.|++.|++++... .+.....   ........++|       +++++.|+++...+ 
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-~l~~~~~---~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~  215 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-SPLNINT---IPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG  215 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-EEECCTT---SSCSBEEEEEECCCBTTTBCTTCEEEEEECCCT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-EEEccCc---cccCCCcEEEEeecccccCCCCCEEEEEeCCCC
Confidence            467899998 3555555444 356777777665533 2221110   12235799999       99999777766543 


Q ss_pred             ------cEEEEeCCC-Ccee-----ecccCCCCcEEEEEecCCC-CeEEEEcCCCcEEEEECC-------CCee------
Q 016257          135 ------HLRIMHWPS-LRII-----LDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTE-------DGVA------  188 (392)
Q Consensus       135 ------~i~i~d~~~-~~~~-----~~~~~~~~~i~~i~~~~~~-~~l~~~~~d~~i~vwd~~-------~~~~------  188 (392)
                            .|.+++... ++..     ..+. .-.....++++|++ .++++-..++.|..+|+.       ++..      
T Consensus       216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~  294 (496)
T 3kya_A          216 KGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK  294 (496)
T ss_dssp             TGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred             CcccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence                  266665333 1211     1111 11244577889954 445566677889999987       4543      


Q ss_pred             -----eEE-EecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC--Cceee--eeeccc---C-----------
Q 016257          189 -----WTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWNKI--GHKRLL---R-----------  244 (392)
Q Consensus       189 -----~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~--~~~~~--~~~~~~---~-----------  244 (392)
                           ... +........+.++|+|++..+    .++-.....|+.++..  .+...  ..+.+.   .           
T Consensus       295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~l----YvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~  370 (496)
T 3kya_A          295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYA----YFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEAR  370 (496)
T ss_dssp             GCTTTEEEEEECSSSSCCEEEEECTTSSEE----EEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCB
T ss_pred             ccccccceeEecCCCCCceEEEEcCCCCEE----EEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccc
Confidence                 112 222223356899999999853    3555677888886543  32210  111110   0           


Q ss_pred             -CCcE-EEEEC-------CCCCEEEEEeCCCcEEEEecCCceeeeeeec------------ccc---------CcceEEE
Q 016257          245 -KPAS-VLSIS-------LDGKYLAMGSKDGDICVVDVKKMEINHWSKR------------LHL---------GTSIALV  294 (392)
Q Consensus       245 -~~v~-~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------~~~---------~~~i~~~  294 (392)
                       .... .++..       ++|.+.++-..+.+|+.++ .++........            +..         -.....|
T Consensus       371 f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI  449 (496)
T 3kya_A          371 MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL  449 (496)
T ss_dssp             CSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred             cCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence             1233 44554       4566666666778899998 45554333221            100         1247789


Q ss_pred             EEeeC-CCeEEEEeCCCeEEEEEeecC
Q 016257          295 EFCPT-QRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       295 ~~s~~-~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      +++++ |.++++=.....|+.+++...
T Consensus       450 avd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          450 VYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             EEECCCCEEEEEeCCCCEEEEEECCCC
Confidence            99996 666666666788888887644

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.50  E-value=0.00053  Score=60.76  Aligned_cols=209  Identities=7%  Similarity=-0.088  Sum_probs=128.2

Q ss_pred             CCCCeeEEEEcCCCCeEEEEe-CCCeEEEEEEeCCc---cceeeccccCCCCCCCCCeEEEEecCCCCEEE-EEeCCCcE
Q 016257           62 SEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGA---TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHL  136 (392)
Q Consensus        62 h~~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i  136 (392)
                      ....+..++|++.+..|+.+. ..+.|+.+++....   ........      .......+++.+.+..|+ +-...+.|
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~------~~~~p~glavD~~~~~lY~~d~~~~~I  183 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR------DIQAPDGLAVDWIHSNIYWTDSVLGTV  183 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS------SCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC------CCCCcccEEEEecCCceEEEECCCCeE
Confidence            356789999998766666554 56778888876522   11111110      224568899988444554 44557889


Q ss_pred             EEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcC--CCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE
Q 016257          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (392)
Q Consensus       137 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (392)
                      .+.+++.................|+++|.+..|+.+..  .+.|...++.... ...+....-.....+++++++..+| 
T Consensus       184 ~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-~~~~~~~~l~~P~glavd~~~~~lY-  261 (400)
T 3p5b_L          184 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLY-  261 (400)
T ss_dssp             EEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEE-
T ss_pred             EEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-cEEEEECCCCceEEEEEEeCCCEEE-
Confidence            99998765443333333346789999997666665542  3689999886433 3333222223678999999887643 


Q ss_pred             EEEEEeCCccEEEEEeCCCceeeeeecc--cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee
Q 016257          215 FCTVQRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (392)
Q Consensus       215 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  282 (392)
                         ++-...+.|..+|+...........  .-.....+++. .+.++++-...+.|..+|..+++....+
T Consensus       262 ---~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          262 ---WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             ---EEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred             ---EEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence               4556678999999875433222221  12334566663 3345555556788999997777766555

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.47  E-value=8.5e-05  Score=63.59  Aligned_cols=227  Identities=7%  Similarity=-0.089  Sum_probs=132.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCce-eecccCCCCcEEEEEecCCCCeEE-EEcCCCcEEEEECCCCeeeE-EEecCCCcceEE
Q 016257          126 RFAAGGVDGHLRIMHWPSLRI-ILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAWT-FLTRNSDEKIEL  202 (392)
Q Consensus       126 ~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~vwd~~~~~~~~-~~~~~~~~~v~~  202 (392)
                      +|+.+. ...|+..++..... .............++|++.+..|+ +-...+.|..+++..+.... .+.... .....
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l-~~p~g   83 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL-LSPDG   83 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECC-SCCCE
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCC-CCccE
Confidence            344433 56789999876531 111112223567899998655544 54566889999987653222 222222 24678


Q ss_pred             EEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEe--CCCcEEEEecCCceeee
Q 016257          203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS--KDGDICVVDVKKMEINH  280 (392)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~  280 (392)
                      +++.+.+..+    .++-...+.|.++++..................+++.|.+..|+...  ..+.|...++.......
T Consensus        84 lavd~~~g~l----y~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~  159 (318)
T 3sov_A           84 LACDWLGEKL----YWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI  159 (318)
T ss_dssp             EEEETTTTEE----EEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             EEEEcCCCeE----EEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence            9999866653    35556678999999875433222223334678999999766666655  25778888886543322


Q ss_pred             eeeccccCcceEEEEEeeCCCeEEEEe-CCCeEEEEEeecCcccccee-eeeeeeeeeeeceEEEEee-ecceeeeeccc
Q 016257          281 WSKRLHLGTSIALVEFCPTQRVVLTAS-KEWGAMITKLTVPADWKEWQ-IYSLLLALFLASAVVFYIF-FENSDSFWNFP  357 (392)
Q Consensus       281 ~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~d~~i~~W~~~  357 (392)
                      .. ... -.....+++++++..|+.+. ..+.|..+++.......... ....+.+.......++.+- ..+.|...+..
T Consensus       160 ~~-~~~-l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~  237 (318)
T 3sov_A          160 II-NSE-IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKY  237 (318)
T ss_dssp             EE-CSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             EE-ECC-CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECC
Confidence            22 122 34678999999776665554 46788888876432211111 1223444444444444443 34567777765


Q ss_pred             ccc
Q 016257          358 VAR  360 (392)
Q Consensus       358 ~~~  360 (392)
                      +|+
T Consensus       238 ~G~  240 (318)
T 3sov_A          238 TGE  240 (318)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.45  E-value=0.00034  Score=59.08  Aligned_cols=196  Identities=8%  Similarity=-0.040  Sum_probs=120.5

Q ss_pred             CeEEEEecCCCCEEEEEe-CCCcEEEEeCCCCceeecccCC-----C--CcEEEEEe---cCCCCeEEEEc---------
Q 016257          114 PQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPKA-----H--KSVLDMDF---SLDSEFLATTS---------  173 (392)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-----~--~~i~~i~~---~~~~~~l~~~~---------  173 (392)
                      ...+++|.+....|..++ ..++|..|+...+.........     .  ..+..+.|   .|+++++++..         
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            346789988656666666 7899999998755432222221     1  14689999   68877777543         


Q ss_pred             ----CCCcEEEEECC---CCeeeEEEecC------------CCcceEEEEecCCCCcceEEEEEEeCCc-cEEEEEeCCC
Q 016257          174 ----TDGSARIWKTE---DGVAWTFLTRN------------SDEKIELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDIST  233 (392)
Q Consensus       174 ----~d~~i~vwd~~---~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~~~d-~~i~v~d~~~  233 (392)
                          .+..+..+|+.   +++.+......            .......++..++|+.     .++++.. +.|...+...
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gna-----YVt~s~~~~~I~rV~pdG  168 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNS-----YVAFALGMPAIARVSADG  168 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCE-----EEEEEESSCEEEEECTTS
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCE-----EEeCCCCCCeEEEEeCCC
Confidence                25779999998   77766554311            1124788999999985     3445555 6777777664


Q ss_pred             ceeeeeec------ccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeec---cc--cCcceEEE-EEeeCCC
Q 016257          234 WNKIGHKR------LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR---LH--LGTSIALV-EFCPTQR  301 (392)
Q Consensus       234 ~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~--~~~~i~~~-~~s~~~~  301 (392)
                      ... ..+.      ......+.++++|+|+.|++....|.|..+|+.+.... .+..   +.  .......+ .--.+|+
T Consensus       169 ~~~-~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~  246 (334)
T 2p9w_A          169 KTV-STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNE  246 (334)
T ss_dssp             CCE-EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred             CEE-eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCE
Confidence            322 2111      11224668999999998888877999999998853220 1111   11  01223443 4445788


Q ss_pred             e-EEEEeCCCeEEEEE
Q 016257          302 V-VLTASKEWGAMITK  316 (392)
Q Consensus       302 ~-l~~~~~dg~i~iw~  316 (392)
                      . |++.+..+.+.+.+
T Consensus       247 vllV~~~~~~~~~l~S  262 (334)
T 2p9w_A          247 SVLVGARAPYAISFRS  262 (334)
T ss_dssp             EEEEEEETTEEEEEEC
T ss_pred             EEEEEcCCCCEEEEEC
Confidence            7 55555565444433

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.40  E-value=0.00045  Score=60.09  Aligned_cols=232  Identities=13%  Similarity=0.091  Sum_probs=122.4

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC---CCEEEEEeC-C-----
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGV-D-----  133 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~-d-----  133 (392)
                      -.....++|.|+|++++ +...+.|++++  +++. ..+.... ...........++|+|+   +..|+++.. .     
T Consensus        30 l~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~-~~~~~~~-v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~  104 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLI-AERPGRIRLFR--EGRL-STYAELS-VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR  104 (352)
T ss_dssp             CSCEEEEEECTTSCEEE-EETTTEEEEEE--TTEE-EEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred             CCCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCc-cEeecce-EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence            44688999999998554 46779898888  3331 1111111 11123457899999998   556655443 2     


Q ss_pred             CcEEEEeCCCCc-----eeec-cc---CCCCcEEEEEecCCCCeEEEEcCC-------------CcEEEEECCCC-----
Q 016257          134 GHLRIMHWPSLR-----IILD-EP---KAHKSVLDMDFSLDSEFLATTSTD-------------GSARIWKTEDG-----  186 (392)
Q Consensus       134 g~i~i~d~~~~~-----~~~~-~~---~~~~~i~~i~~~~~~~~l~~~~~d-------------~~i~vwd~~~~-----  186 (392)
                      +.|..++...++     .+.. +.   ........++|.|||.++++.+..             +.|.-++....     
T Consensus       105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n  184 (352)
T 2ism_A          105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN  184 (352)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred             cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence            567778776431     1211 22   111134689999999766654321             45555554320     


Q ss_pred             -------eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCcc-------EEEEEeCCC----------------cee
Q 016257          187 -------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA-------LLAVYDIST----------------WNK  236 (392)
Q Consensus       187 -------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~-------~i~v~d~~~----------------~~~  236 (392)
                             .....+..... ....++|+|+...++   +.-.+.+.       .|.+.....                ..+
T Consensus       185 pf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~---v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p  260 (352)
T 2ism_A          185 PFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELF---SSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDP  260 (352)
T ss_dssp             TTTTCTTSCTTEEEECCS-EECCCEECTTTCCEE---EEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCC
T ss_pred             cccCCCCCCccEEEEcCC-CcccEEEECCCCCEE---EEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCC
Confidence                   11122222233 367789999444322   22222222       243332111                001


Q ss_pred             eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCcee------eeeeeccccCcceEEEEEeeCCCeEEEEe
Q 016257          237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI------NHWSKRLHLGTSIALVEFCPTQRVVLTAS  307 (392)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  307 (392)
                      +..+ ........++| .+|.++++.-..+.|...+++....      ...+. .. ...+..+++.|||.++++..
T Consensus       261 ~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-~~-~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          261 LYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-SG-FGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             SEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-ES-SCCEEEEEECTTSCEEEEEC
T ss_pred             eEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec-cc-CCCeeEEEECCCCcEEEEEe
Confidence            1111 11224456777 4666666555667788877764321      11111 12 45789999999998666654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.38  E-value=0.00065  Score=65.38  Aligned_cols=227  Identities=9%  Similarity=-0.061  Sum_probs=130.0

Q ss_pred             eEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEE-eCCCcEEEEeCCCC----ceeeccc
Q 016257           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSL----RIILDEP  151 (392)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~----~~~~~~~  151 (392)
                      +|+.+... .|+..++....... +.       .....+..++|.+....|+.. ...+.|+.+++...    .....+.
T Consensus       397 ~Ll~an~~-~Ir~i~l~~~~~~~-l~-------~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~  467 (791)
T 3m0c_C          397 YLFFTNRH-EVRKMTLDRSEYTS-LI-------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS  467 (791)
T ss_dssp             EEEEECBS-SEEEECTTSCCCEE-EE-------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred             cccccccc-ceeEeeccCCccee-ee-------cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe
Confidence            44444433 36666665443211 11       123467899999865555554 45677888888642    1122222


Q ss_pred             CCCCcEEEEEecCCCCeEE-EEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEe
Q 016257          152 KAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (392)
Q Consensus       152 ~~~~~i~~i~~~~~~~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d  230 (392)
                      ........|++.+.++.|+ +-...+.|.+.++.... ...+..........|+++|.+..+|   ..-.+..+.|...+
T Consensus       468 ~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~~l~~P~gIaVDp~~g~LY---wtD~g~~~~I~~~~  543 (791)
T 3m0c_C          468 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMY---WTDWGTPAKIKKGG  543 (791)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEE---EEECSSSCEEEEEE
T ss_pred             cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEEeCCCCCcceEEEecCCCCEE---EecCCCCCeEEEEe
Confidence            2334567899988775554 45567889999986544 3444333333588999999877633   12223347899999


Q ss_pred             CCCceeeeeecccCCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC
Q 016257          231 ISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE  309 (392)
Q Consensus       231 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  309 (392)
                      +............-.....|++++.+..|+.+. ..+.|..+++..............-.....|++.. +.++++-...
T Consensus       544 ~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~  622 (791)
T 3m0c_C          544 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIIN  622 (791)
T ss_dssp             TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTT
T ss_pred             cCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCC
Confidence            876544333333335678999998777776664 45679999987655444332111022345666632 2333344445


Q ss_pred             CeEEEEEe
Q 016257          310 WGAMITKL  317 (392)
Q Consensus       310 g~i~iw~~  317 (392)
                      +.|...+.
T Consensus       623 ~~I~~~dk  630 (791)
T 3m0c_C          623 EAIFSANR  630 (791)
T ss_dssp             TEEEEEET
T ss_pred             CEEEEEeC
Confidence            66665553

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.34  E-value=0.00024  Score=60.54  Aligned_cols=191  Identities=14%  Similarity=0.192  Sum_probs=120.0

Q ss_pred             CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC----CCE--EEEEe--C--CCcEEEEeCC-
Q 016257           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD----GSR--FAAGG--V--DGHLRIMHWP-  142 (392)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~--l~~~~--~--dg~i~i~d~~-  142 (392)
                      ...+++.....+-+.+||+ +++....+.         .+.++.+..-|+    |+.  ++.++  .  +++|.+|++. 
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~---------~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp  108 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYN---------TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG  108 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEEC---------CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEcc---------CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC
Confidence            3345666677778999999 555444332         145666666552    222  33333  3  5789999773 


Q ss_pred             -CCceeecccC------CC-CcEEEEEe--cCC-CC-eEEEEcCCCcEEEEECC-------CCeeeEEEecCCCcceEEE
Q 016257          143 -SLRIILDEPK------AH-KSVLDMDF--SLD-SE-FLATTSTDGSARIWKTE-------DGVAWTFLTRNSDEKIELC  203 (392)
Q Consensus       143 -~~~~~~~~~~------~~-~~i~~i~~--~~~-~~-~l~~~~~d~~i~vwd~~-------~~~~~~~~~~~~~~~v~~~  203 (392)
                       +++ +.....      .. ..+..+++  +|. ++ ++++...+|.+..|++.       +.+.++++...  ..+..|
T Consensus       109 ~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg--sq~Egc  185 (355)
T 3amr_A          109 KNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN--SQTEGM  185 (355)
T ss_dssp             TTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS--SCEEEE
T ss_pred             CCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC--CCcceE
Confidence             333 322311      11 45677777  774 44 57788889999999883       33556676654  368899


Q ss_pred             EecCCCCcceEEEEEEeCCccEEEEEeCC-----Cceeeeeec--ccCCCcEEEEE--CCCCC-EEEEEe-CCCcEEEEe
Q 016257          204 RFSKDGTKPFLFCTVQRGDKALLAVYDIS-----TWNKIGHKR--LLRKPASVLSI--SLDGK-YLAMGS-KDGDICVVD  272 (392)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~d~~i~v~d~~-----~~~~~~~~~--~~~~~v~~~~~--s~~~~-~l~~~~-~dg~i~iwd  272 (392)
                      +..+....     ++.+.++.-|..||.+     +.+.+....  .....+..+++  .++++ +|++++ .++++.+||
T Consensus       186 vvDd~~g~-----Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd  260 (355)
T 3amr_A          186 AADDEYGR-----LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD  260 (355)
T ss_dssp             EEETTTTE-----EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             EEcCCCCe-----EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence            99988776     6777787777777755     234443332  12246788888  45565 666666 567899999


Q ss_pred             cC-Cceeeeee
Q 016257          273 VK-KMEINHWS  282 (392)
Q Consensus       273 ~~-~~~~~~~~  282 (392)
                      .+ +.+.+..+
T Consensus       261 r~~~~~~vg~f  271 (355)
T 3amr_A          261 RQGKNKYVADF  271 (355)
T ss_dssp             SSTTCCEEEEE
T ss_pred             CCCCCcEEEEE
Confidence            96 55555444

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.33  E-value=0.0012  Score=57.39  Aligned_cols=234  Identities=12%  Similarity=0.020  Sum_probs=125.6

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC---CCEEEEEeC----C--
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGV----D--  133 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~----d--  133 (392)
                      -.....++|.|+|++ +++..++.|++++ .+++  ..+.... ...........++++|+   +..|+++..    +  
T Consensus        28 l~~P~~ia~~pdG~l-~V~e~~g~I~~~d-~~G~--~~~~~~~-v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~  102 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRY-LVTERPGRLVLIS-PSGK--KLVASFD-VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH  102 (354)
T ss_dssp             CSCEEEEEEEETTEE-EEEETTTEEEEEC-SSCE--EEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred             CCCCeEEEEcCCCeE-EEEeCCCEEEEEe-CCCc--eEeeccc-eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence            456889999999974 4456779898886 3333  1111101 01112356899999997   555555443    2  


Q ss_pred             --CcEEEEeCCCC-------ceeec-ccCC-CCcEEEEEecCCCCeEEEEcC-------------CCcEEEEECCCCe--
Q 016257          134 --GHLRIMHWPSL-------RIILD-EPKA-HKSVLDMDFSLDSEFLATTST-------------DGSARIWKTEDGV--  187 (392)
Q Consensus       134 --g~i~i~d~~~~-------~~~~~-~~~~-~~~i~~i~~~~~~~~l~~~~~-------------d~~i~vwd~~~~~--  187 (392)
                        ..|..++....       +.+.. +... ......++|.|||.++++.+.             .|.|.-++.. ++  
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p  181 (354)
T 3a9g_A          103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPP  181 (354)
T ss_dssp             EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCC
T ss_pred             cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCC
Confidence              56777776543       11111 1111 113467999999987666432             1345555543 22  


Q ss_pred             ------eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCc--cEEEEEeCCC--------c--------eeeeeeccc
Q 016257          188 ------AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK--ALLAVYDIST--------W--------NKIGHKRLL  243 (392)
Q Consensus       188 ------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d--~~i~v~d~~~--------~--------~~~~~~~~~  243 (392)
                            ....+..... ....++|+|+...++   +.-.+.+  ..|.+...-.        +        .++..+...
T Consensus       182 ~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~---v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~  257 (354)
T 3a9g_A          182 ADNPFPNSPIWSYGHR-NPQGIDWHRASGVMV---ATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSE  257 (354)
T ss_dssp             TTSSSTTCCEEEECCS-CCCEEEECTTTCCEE---EEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred             CCCCCCCCcEEEEccC-CcceEEEeCCCCCEE---EEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCC
Confidence                  1122222333 356899999433322   1222222  2233322110        0        111112112


Q ss_pred             CCCcEEEEEC-------CCCCEEEEEeCCCcEEEEecCCc-eee--eeeeccccCcceEEEEEeeCCCeEEEEe
Q 016257          244 RKPASVLSIS-------LDGKYLAMGSKDGDICVVDVKKM-EIN--HWSKRLHLGTSIALVEFCPTQRVVLTAS  307 (392)
Q Consensus       244 ~~~v~~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~  307 (392)
                      ......++|.       .+|.++++.-..+.|...++... +..  ..+.... ...+..+++.|||.++++..
T Consensus       258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNV-FGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTT-SCCEEEEEECTTSCEEEEEC
T ss_pred             CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCC-CCCeeEEEECCCCcEEEEEe
Confidence            3456778884       46777776666778988888753 322  1221222 45789999999998666654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.27  E-value=0.0016  Score=56.04  Aligned_cols=273  Identities=11%  Similarity=0.064  Sum_probs=142.6

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  142 (392)
                      ...+.++.|.+++..+++ +..+.|  |....+....+......  ......+.++.|.+ +..++ ++..+.|.. ...
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i--~~s~DgG~tW~~~~~~~--~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~D  106 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATL--METRDGGQTWEPRTLVL--DHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTD  106 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEE--EEESSTTSSCEECCCCC--SCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESS
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeE--EEeCCCCCCCeECCCCC--CCCCccEEEEEecC-CeEEE-EECCCeEEE-ECC
Confidence            457899999877777775 456644  33333322222211100  01234688899976 44444 455664443 223


Q ss_pred             CCceeeccc---CCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEE
Q 016257          143 SLRIILDEP---KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (392)
Q Consensus       143 ~~~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (392)
                      .++.-....   .....+..+.+.+++..++.+. ++.|.. ....++.-..........+..+++.+++..     ++.
T Consensus       107 gG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~-----~~~  179 (327)
T 2xbg_A          107 GGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEY-----VAV  179 (327)
T ss_dssp             TTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCE-----EEE
T ss_pred             CCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcE-----EEE
Confidence            333221111   1224577888877776666554 554432 222344444444344446889999998774     344


Q ss_pred             eCCccEEEEEeC--CCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecc--ccCcceEEEE
Q 016257          220 RGDKALLAVYDI--STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL--HLGTSIALVE  295 (392)
Q Consensus       220 ~~~d~~i~v~d~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~i~~~~  295 (392)
                      +...+..+-.|-  .+.+.+.  ......+..+.+.+++..++. +.+|.+++.+...++.-..+...  .....+..++
T Consensus       180 g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~  256 (327)
T 2xbg_A          180 SSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLA  256 (327)
T ss_dssp             ETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEE
T ss_pred             ECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEE
Confidence            444444444453  3444432  233567888999999876654 45787777643334433322211  1034588999


Q ss_pred             EeeCCCeEEEEeCCCeEEEEEeecCccccceee----eeeeeee-eeeceEEEEeeecceeeeec
Q 016257          296 FCPTQRVVLTASKEWGAMITKLTVPADWKEWQI----YSLLLAL-FLASAVVFYIFFENSDSFWN  355 (392)
Q Consensus       296 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~d~~i~~W~  355 (392)
                      +.+++..++++ .+|.+ .+..+.+..+.....    ....... +.....++.++.+|.|.-++
T Consensus       257 ~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          257 YRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV  319 (327)
T ss_dssp             ESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred             ecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence            99887766655 46666 333333333221110    0000111 12345566677777665554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.25  E-value=6.3e-05  Score=67.43  Aligned_cols=155  Identities=8%  Similarity=0.042  Sum_probs=99.1

Q ss_pred             cEEEEEecC-CCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCC----ccEEEEEe
Q 016257          156 SVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD----KALLAVYD  230 (392)
Q Consensus       156 ~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----d~~i~v~d  230 (392)
                      ....++++| ++..|+.+...+.|+.+|+..++......  .......++|++++..+|    ++...    ...+..++
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~ly----vad~~~~~~~~~v~~~~  211 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTHEADSMI----ITNDQNNNDRPNNYILT  211 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECTTSSEEE----EEECCSCTTSEEEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeCCCCEEE----EEeCCCCcccceEEEEe
Confidence            457889998 45666666655889999997765443332  233588999999998632    33221    22344444


Q ss_pred             CCCceee--eeecccCCCcEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeE-EEE
Q 016257          231 ISTWNKI--GHKRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV-LTA  306 (392)
Q Consensus       231 ~~~~~~~--~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~  306 (392)
                      .. +...  ..+.. ......++++| +|.++++-..++.|..++..++.......... ......++|+|+|++| ++-
T Consensus       212 ~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~-~~~P~gia~~pdG~~lyv~d  288 (430)
T 3tc9_A          212 RE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD-SGWEFHIQFHPSGNYAYIVV  288 (430)
T ss_dssp             GG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS-SSCCEEEEECTTSSEEEEEE
T ss_pred             CC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC-CCcceeEEEcCCCCEEEEEE
Confidence            33 2211  11211 23456788999 67766666677899999998776533332222 3457899999999955 444


Q ss_pred             eCCCeEEEEEeec
Q 016257          307 SKEWGAMITKLTV  319 (392)
Q Consensus       307 ~~dg~i~iw~~~~  319 (392)
                      ...+.|..++...
T Consensus       289 ~~~~~I~~~~~d~  301 (430)
T 3tc9_A          289 VNQHYILRSDYDW  301 (430)
T ss_dssp             TTTTEEEEEEEET
T ss_pred             CCCCEEEEEeCCc
Confidence            5678898888764

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.22  E-value=0.0022  Score=55.68  Aligned_cols=245  Identities=11%  Similarity=0.058  Sum_probs=127.4

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC---CCEEEEEeC--------
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGV--------  132 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~--------  132 (392)
                      .....|+|.|+|+.|+++...|.|++++. .+.....+................++++|+   +..|+....        
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            46789999999984445567898888873 222111111100001122356789999996   555555432        


Q ss_pred             CCcEEEEeCCCCc-------eee-cccC---CCCcEEEEEecCCCCeEEEEcC-------------CCcEEEEECCCCe-
Q 016257          133 DGHLRIMHWPSLR-------IIL-DEPK---AHKSVLDMDFSLDSEFLATTST-------------DGSARIWKTEDGV-  187 (392)
Q Consensus       133 dg~i~i~d~~~~~-------~~~-~~~~---~~~~i~~i~~~~~~~~l~~~~~-------------d~~i~vwd~~~~~-  187 (392)
                      ...|..+++....       .+. .+..   ....-..++|.|||.++++.+.             .|.|.-++....- 
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            2346666664321       111 1111   1112457999999966655433             2456666654220 


Q ss_pred             -----------eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCc--cEEEEEeCCCcee------------------
Q 016257          188 -----------AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK--ALLAVYDISTWNK------------------  236 (392)
Q Consensus       188 -----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d--~~i~v~d~~~~~~------------------  236 (392)
                                 ....+...+. ....++|+|....++   +.-.+.+  ..|.+  +..+..                  
T Consensus       177 ~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~---~~d~g~~~~dei~~--i~~G~nyGwp~~~~~~~~~~~~~~  250 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALW---LNEHGPRGGDEINI--PQKGKNYGWPLATWGINYSGFKIP  250 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEE---EEEECSBSCEEEEC--CCTTCBCCTTTBCSSBCTTSSCCT
T ss_pred             CCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEE---EEecCCCCCcEEeE--eccCCcCCCCCccCCCCCCCCccC
Confidence                       1222333333 478899999433322   1222222  12222  111110                  


Q ss_pred             -------------eeeecccCCCcEEEEECC-------CCCEEEEEeCCCcEEEEecCCceeeeee--eccccCcceEEE
Q 016257          237 -------------IGHKRLLRKPASVLSISL-------DGKYLAMGSKDGDICVVDVKKMEINHWS--KRLHLGTSIALV  294 (392)
Q Consensus       237 -------------~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~i~~~  294 (392)
                                   +..+ .+......++|..       +|+++++.-..+.|...++..++.....  .... ...+..+
T Consensus       251 ~~~~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~rp~~v  328 (353)
T 2g8s_A          251 EAKGEIVAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDR-GQRIRDV  328 (353)
T ss_dssp             TCCBSSCTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGG-CCCEEEE
T ss_pred             cccCCCCCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCC-CCceeEE
Confidence                         0001 1123456677764       4667776667788888888766543221  1122 3579999


Q ss_pred             EEeeCCCeEEEEeCCCeEEEEEee
Q 016257          295 EFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       295 ~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      ++.|||.++++.. +..=+||.+.
T Consensus       329 ~~~pdG~lyv~td-~~~g~I~ri~  351 (353)
T 2g8s_A          329 RTGPDGYLYVLTD-ESSGELLKVS  351 (353)
T ss_dssp             EECTTSCEEEEEC-STTEEEEEEE
T ss_pred             EECCCCcEEEEEe-CCCCEEEEEe
Confidence            9999998665543 2223556554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.21  E-value=0.002  Score=62.12  Aligned_cols=187  Identities=6%  Similarity=-0.104  Sum_probs=117.2

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEE-EEcCCCcEEEEECCCCe---eeEEEecCCCcceE
Q 016257          126 RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGV---AWTFLTRNSDEKIE  201 (392)
Q Consensus       126 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~vwd~~~~~---~~~~~~~~~~~~v~  201 (392)
                      +|+.+ ....|+..++....... +......+..++|++....|+ +-...+.|+.+++....   ....+.........
T Consensus       397 ~Ll~a-n~~~Ir~i~l~~~~~~~-l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~  474 (791)
T 3m0c_C          397 YLFFT-NRHEVRKMTLDRSEYTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  474 (791)
T ss_dssp             EEEEE-CBSSEEEECTTSCCCEE-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             ccccc-cccceeEeeccCCccee-eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence            44443 34668888887654432 233345678999998555554 44556789989886531   12222221223567


Q ss_pred             EEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeC-C-CcEEEEecCCceee
Q 016257          202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK-D-GDICVVDVKKMEIN  279 (392)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d-g~i~iwd~~~~~~~  279 (392)
                      .|++.+.+..+    .++-...+.|.+.++..................|+++|.+.+|+.... + +.|...++......
T Consensus       475 GLAvD~~~~~L----Y~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~  550 (791)
T 3m0c_C          475 GLAVDWIHSNI----YWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  550 (791)
T ss_dssp             EEEEETTTTEE----EEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             eeeeeecCCcE----EEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence            89999888763    356667889999999865443333333456789999998666666542 2 67999998765544


Q ss_pred             eeeeccccCcceEEEEEeeCCCeEEEEe-CCCeEEEEEeecC
Q 016257          280 HWSKRLHLGTSIALVEFCPTQRVVLTAS-KEWGAMITKLTVP  320 (392)
Q Consensus       280 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~  320 (392)
                      ..+ ... -.....|++++.+..|+.+. ..+.|...++...
T Consensus       551 ~lv-~~~-l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          551 SLV-TEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             EEE-CSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             EEE-eCC-CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence            433 222 45789999998777666664 4467777776543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.18  E-value=0.00049  Score=61.62  Aligned_cols=196  Identities=11%  Similarity=0.077  Sum_probs=115.5

Q ss_pred             CeEEEEecCC--CCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCC---C-cEEEEECCCCe
Q 016257          114 PQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD---G-SARIWKTEDGV  187 (392)
Q Consensus       114 ~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---~-~i~vwd~~~~~  187 (392)
                      ....++|+|+  ...|+.+...+.|+.++..+++... +.........++++++++++++....   . .+...+...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            4678999984  4456666555889999988776543 33344568899999999944443321   1 13333322211


Q ss_pred             e-eEEEecCCCcceEEEEecC-CCCcceEEEEEEeCCccEEEEEeCCCceeeeee-cc-cCCCcEEEEECCCCCEEEEEe
Q 016257          188 A-WTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK-RL-LRKPASVLSISLDGKYLAMGS  263 (392)
Q Consensus       188 ~-~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~  263 (392)
                      . ...+. . ......++++| ++..     .++...++.|+.+|..++.....+ .. ....-..++++|++++|+.+.
T Consensus       219 ~~~~~~~-~-~~~P~giavd~~~G~l-----yv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad  291 (433)
T 4hw6_A          219 TERLSLC-N-ARGAKTCAVHPQNGKI-----YYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY  291 (433)
T ss_dssp             CCEEEEE-E-CSSBCCCEECTTTCCE-----EECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred             ecccccc-c-cCCCCEEEEeCCCCeE-----EEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence            1 01121 1 12456788999 5552     345556789999999866552222 11 122334699999999666554


Q ss_pred             -CCCcEEEEecC--Cceee--eee-ec----cc--------cCcceEEEEE---------eeCCCeEEEEeCCCeEEEEE
Q 016257          264 -KDGDICVVDVK--KMEIN--HWS-KR----LH--------LGTSIALVEF---------CPTQRVVLTASKEWGAMITK  316 (392)
Q Consensus       264 -~dg~i~iwd~~--~~~~~--~~~-~~----~~--------~~~~i~~~~~---------s~~~~~l~~~~~dg~i~iw~  316 (392)
                       ..+.|+.++..  ++...  ..+ ..    +.        .-.....+++         .++|.++++-...+.|+.++
T Consensus       292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~  371 (433)
T 4hw6_A          292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT  371 (433)
T ss_dssp             TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred             CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence             56789998865  23211  111 00    00        0124677999         66777666666677888776


Q ss_pred             e
Q 016257          317 L  317 (392)
Q Consensus       317 ~  317 (392)
                      .
T Consensus       372 ~  372 (433)
T 4hw6_A          372 P  372 (433)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.16  E-value=4.6e-05  Score=72.68  Aligned_cols=207  Identities=7%  Similarity=-0.081  Sum_probs=121.4

Q ss_pred             CCeeEEEEcCCCCeEEEEe-CCCeEEEEEEeCC---ccceeeccccCCCCCCCCCeEEEEecCCCCEEE-EEeCCCcEEE
Q 016257           64 GDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGG---ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRI  138 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~i  138 (392)
                      ..+..++|++.+..|+.+. ..+.|+.+++...   .....+..      ........+++.+.+..|+ +-...+.|.+
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~------~~~~~P~glavD~~~g~LY~tD~~~~~I~v  479 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSV  479 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC------SCC--CCCEECCCSSSBCEECCTTTSCEEE
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe------CCCCCcceEEEEeeCCcEEEEeccCCeEEE
Confidence            4577899998777776654 4567888887651   11111110      0112346688886444444 4345688999


Q ss_pred             EeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcC--CCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEE
Q 016257          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC  216 (392)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (392)
                      +++..................++++|.+.+|+.+..  .+.|..+++... ....+....-.....|+|+|++..+|   
T Consensus       480 ~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY---  555 (699)
T 1n7d_A          480 ADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLY---  555 (699)
T ss_dssp             EBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEE---
T ss_pred             EecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEE---
Confidence            998755433222222335678899997666665543  267888877533 22233222223467899999877643   


Q ss_pred             EEEeCCccEEEEEeCCCceeeeeecc--cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee
Q 016257          217 TVQRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (392)
Q Consensus       217 ~~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  282 (392)
                       ++-...+.|..+|+...........  .......+++..+ .++++....+.|..+|..+++....+
T Consensus       556 -~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          556 -WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             -EEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             -EEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence             4556678999999975332222211  1122334555443 44445556688999998888877665

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.14  E-value=0.0015  Score=61.33  Aligned_cols=205  Identities=9%  Similarity=-0.075  Sum_probs=121.8

Q ss_pred             CCCeeEEEEcCCCCeEEEEe-CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEE-eCCCcEEEEe
Q 016257           63 EGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMH  140 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d  140 (392)
                      -..+..++|++.+..|+.+. ..+.|..+++............      .-.....+++.+.+..|+.+ ...+.|.+.+
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~------~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~  112 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS------GLLSPDGLACDWLGEKLYWTDSETNRIEVSN  112 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECS------SCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeC------CCCCcCeEEEEecCCEEEEEeCCCCEEEEEE
Confidence            45688999999777776654 4567888887654211122111      12467899999866656555 4568899999


Q ss_pred             CCCCceeecccCCCCcEEEEEecCCCCeEEEEcC--CCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (392)
                      +............-.....|+++|.+..|+.+..  .+.|...++. +.....+....-.....+++++++..+|    .
T Consensus       113 ~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~Glald~~~~~LY----~  187 (619)
T 3s94_A          113 LDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLY----W  187 (619)
T ss_dssp             TTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEEEEEEETTTTEEE----E
T ss_pred             CCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCcEEEEEccCCEEE----E
Confidence            8754432222233345778999997666665543  3567777775 3333333322233678999999877643    4


Q ss_pred             EeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceee
Q 016257          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN  279 (392)
Q Consensus       219 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  279 (392)
                      +-...+.|..+|+..................+++..+ ...++-...+.|...|..+++..
T Consensus       188 aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          188 ADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             EETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred             EeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence            4566788999998764433222211222345677655 44444446778999998777544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.13  E-value=0.0014  Score=55.29  Aligned_cols=208  Identities=11%  Similarity=0.049  Sum_probs=124.5

Q ss_pred             EeeCCCCCeeEEEEcCCCCeEEEEe-CCCeEEEEEEeCCccceeeccccCCCC----CCCCCeEEEEe---cCCCCEEEE
Q 016257           58 VFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPL----QDAGPQKCLSF---SVDGSRFAA  129 (392)
Q Consensus        58 ~~~~h~~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~---s~~~~~l~~  129 (392)
                      .+....--..+++|++....|+.++ ..++|..|+...+... ...   .+..    .....+..+.|   .|+++++++
T Consensus         7 ~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~-~~~---~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv   82 (334)
T 2p9w_A            7 DVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF-NVV---IDGASSNGDGEQQMSGLSLLTHDNSKRLFAV   82 (334)
T ss_dssp             EECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE-EEC---CTTTCCSSCCSEEEEEEEESSSSSCCEEEEE
T ss_pred             EecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE-EEe---cCCccccCCCcceeeEEEEeccCCCCcEEEE
Confidence            3444555677899988666666666 7899999998644322 111   1111    11124589999   688777775


Q ss_pred             Ee-------------CCCcEEEEeCC---CCceeeccc--C-----------CCCcEEEEEecCCCCeEEEEcCC-CcEE
Q 016257          130 GG-------------VDGHLRIMHWP---SLRIILDEP--K-----------AHKSVLDMDFSLDSEFLATTSTD-GSAR  179 (392)
Q Consensus       130 ~~-------------~dg~i~i~d~~---~~~~~~~~~--~-----------~~~~i~~i~~~~~~~~l~~~~~d-~~i~  179 (392)
                      ..             .+..+..||+.   +++.+....  .           ......+++..++|+..++++.. +.|.
T Consensus        83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~  162 (334)
T 2p9w_A           83 MKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIA  162 (334)
T ss_dssp             EEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEE
T ss_pred             EcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEE
Confidence            43             25779999998   776543221  0           11258899999999999988887 7777


Q ss_pred             EEECCCCeeeEEEecCC-----CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee--eeeec-c---cCCCcE
Q 016257          180 IWKTEDGVAWTFLTRNS-----DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKR-L---LRKPAS  248 (392)
Q Consensus       180 vwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~--~~~~~-~---~~~~v~  248 (392)
                      ..+.... ....+....     ....+.++++|++..     ++.....+.|..+|++....  +.... +   .-....
T Consensus       163 rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~-----Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~d  236 (334)
T 2p9w_A          163 RVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNK-----LIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTE  236 (334)
T ss_dssp             EECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTE-----EEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEE
T ss_pred             EEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCE-----EEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcc
Confidence            7776433 333332111     112568999999986     44444499999999885322  11110 1   111233


Q ss_pred             EE-EECCCCCE-EEEEeCCCcEEEEecCC
Q 016257          249 VL-SISLDGKY-LAMGSKDGDICVVDVKK  275 (392)
Q Consensus       249 ~~-~~s~~~~~-l~~~~~dg~i~iwd~~~  275 (392)
                      .+ ..-.+|+. +++....+.+.+.+.+.
T Consensus       237 gilp~~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          237 KIVTVPVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred             cccccccCCEEEEEEcCCCCEEEEECCCC
Confidence            33 33346766 44444455555555444

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.12  E-value=2.9e-05  Score=74.02  Aligned_cols=200  Identities=11%  Similarity=-0.072  Sum_probs=113.6

Q ss_pred             CCeEEEEecCCCCEEEEEe-CCCcEEEEeCCC----CceeecccCCCCcEEEEEecCCCCeE-EEEcCCCcEEEEECCCC
Q 016257          113 GPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPS----LRIILDEPKAHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDG  186 (392)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~----~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~  186 (392)
                      ..+..++|.+.+..|+.+. ..+.|+.+++..    ......+.........|++.+.+..| ++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            4567889998776776654 457899999875    22221121122245678888655444 44455688999998654


Q ss_pred             eeeEEEecCCCcceEEEEecCCCCcceEEEEEEe-CCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEE-eC
Q 016257          187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR-GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG-SK  264 (392)
Q Consensus       187 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~  264 (392)
                      .. ..+..........++++|.+..+|    ++. +..+.|.++++............-.....|+|+|++..|+.+ +.
T Consensus       486 ~~-~~l~~~~~~~P~giavDp~~g~ly----~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~  560 (699)
T 1n7d_A          486 KR-KTLFREQGSKPRAIVVDPVHGFMY----WTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK  560 (699)
T ss_dssp             CE-EEECCCSSCCCCCEECCSSSSCCE----ECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETT
T ss_pred             ce-EEEEeCCCCCcceEEEccCCCcEE----EcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecC
Confidence            43 333222223467899999776632    222 223678888876432221111222345679999976555554 45


Q ss_pred             CCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          265 DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       265 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      .+.|..+++........+...........|++..+ .++++....+.|..++..
T Consensus       561 ~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          561 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETT
T ss_pred             CCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEcc
Confidence            67899999875443332211110223445566443 444455556777777654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.07  E-value=0.0069  Score=56.92  Aligned_cols=225  Identities=7%  Similarity=-0.096  Sum_probs=137.4

Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeccc-CCCCcEEEEEecCCCCeEEE-EcCCCcEEEEECCCCeeeEEEecCCCcceEEE
Q 016257          126 RFAAGGVDGHLRIMHWPSLRIILDEP-KAHKSVLDMDFSLDSEFLAT-TSTDGSARIWKTEDGVAWTFLTRNSDEKIELC  203 (392)
Q Consensus       126 ~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~  203 (392)
                      +|+.+ ....|+..++++........ ..-.....++|++.+..|+. -..++.|+.+++........+... ......+
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g-~~~P~Gl   85 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG-LDYPEGM   85 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSCCCEE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC-CCCcceE
Confidence            44443 46779999998654332222 22346889999997666554 456788999998654433333322 2356789


Q ss_pred             EecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEe--CCCcEEEEecCCceeeee
Q 016257          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS--KDGDICVVDVKKMEINHW  281 (392)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~  281 (392)
                      ++.+.+..+    ..+-...+.|.+.++............-.....++++|...+|+...  ..+.|...++........
T Consensus        86 AvD~~~~~L----Y~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l  161 (628)
T 4a0p_A           86 AVDWLGKNL----YWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL  161 (628)
T ss_dssp             EEETTTTEE----EEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred             EEEeCCCEE----EEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE
Confidence            999877763    35566778999999875433222223334578999999666666554  256788888876554333


Q ss_pred             eeccccCcceEEEEEeeCCCeEEEEe-CCCeEEEEEeecCccccce-eeeeeeeeeeeeceEEEEee-ecceeeeecccc
Q 016257          282 SKRLHLGTSIALVEFCPTQRVVLTAS-KEWGAMITKLTVPADWKEW-QIYSLLLALFLASAVVFYIF-FENSDSFWNFPV  358 (392)
Q Consensus       282 ~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~d~~i~~W~~~~  358 (392)
                      ..  . ......++++++++.|+.+. ..+.|...++..... ... .....+.+..+....++.+- ..+.|..-|..+
T Consensus       162 ~~--~-~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~t  237 (628)
T 4a0p_A          162 VP--N-VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTS  237 (628)
T ss_dssp             EC--S-CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             EC--C-CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCC
Confidence            32  2 45788999999877666655 456788777764332 221 11223445555555555554 245666666555


Q ss_pred             cc
Q 016257          359 AR  360 (392)
Q Consensus       359 ~~  360 (392)
                      |+
T Consensus       238 g~  239 (628)
T 4a0p_A          238 GQ  239 (628)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.05  E-value=0.0086  Score=56.26  Aligned_cols=225  Identities=8%  Similarity=-0.051  Sum_probs=136.0

Q ss_pred             eEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CCCcEEEEeCCCCceeecccCCCC
Q 016257           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPKAHK  155 (392)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~  155 (392)
                      +|+.+ ....|+..++.+........      +..-..+..++|.+.+..|+.+. .++.|+.+++..............
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~------~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~   80 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIP------LTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLD   80 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECC------CCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEE------cCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCC
Confidence            55554 44568888887654221111      11234678999999766666554 568898888865433222222224


Q ss_pred             cEEEEEecCCCCeEE-EEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEe-CCccEEEEEeCCC
Q 016257          156 SVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR-GDKALLAVYDIST  233 (392)
Q Consensus       156 ~i~~i~~~~~~~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~d~~i~v~d~~~  233 (392)
                      ....+++++.++.|+ +-...+.|.+.++.... ...+....-.....++++|....+|    .+- +..+.|...++..
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~iavdp~~G~lY----~tD~g~~~~I~r~~~dG  155 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLVWKDLDSPRALALDPAEGFMY----WTEWGGKPKIDRAAMDG  155 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-CEEEECSSCCCEEEEEEETTTTEEE----EEECSSSCEEEEEETTS
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEEeCCCCCcccEEEccCCCeEE----EeCCCCCCEEEEEeCCC
Confidence            567888987655554 44556789999986543 3333322233578999999766532    222 3467888888875


Q ss_pred             ceeeeeecccCCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeE
Q 016257          234 WNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGA  312 (392)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  312 (392)
                      ....... ..-.....++++++++.|+.+. ..+.|..+|+..... ..+. .. ......+++.. +.++++-...+.|
T Consensus       156 ~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~-~~-l~~P~glav~~-~~ly~tD~~~~~I  230 (628)
T 4a0p_A          156 SERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA-DD-LPHPFGLTQYQ-DYIYWTDWSRRSI  230 (628)
T ss_dssp             CSCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-EC-CSCEEEEEEET-TEEEEEETTTTEE
T ss_pred             CceEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee-cc-CCCceEEEEEC-CEEEEecCCCCEE
Confidence            4432222 2345678999999877776665 457899999876544 2222 22 33456777764 4444444446777


Q ss_pred             EEEEee
Q 016257          313 MITKLT  318 (392)
Q Consensus       313 ~iw~~~  318 (392)
                      ...+..
T Consensus       231 ~~~dk~  236 (628)
T 4a0p_A          231 ERANKT  236 (628)
T ss_dssp             EEEETT
T ss_pred             EEEECC
Confidence            766643

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.04  E-value=0.0013  Score=56.72  Aligned_cols=202  Identities=12%  Similarity=0.090  Sum_probs=113.3

Q ss_pred             CCeeEEEEcCCCCeEEEE------------eCCCeEEEEEEeCCccc-eeeccccCCCCCCCCCeEEEEecC--CCC-EE
Q 016257           64 GDPMTIAVNPSGDDFVCS------------TTNGGCKLFEVYGGATD-INLLAKKMPPLQDAGPQKCLSFSV--DGS-RF  127 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~------------~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~--~~~-~l  127 (392)
                      .....+...|+|..++++            ..+|.|.++|..+.... ..+................+.+.+  ++. +|
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            456778888887554444            16889999998643211 111111100111234667787766  454 44


Q ss_pred             EEE-eC--CCcEEEEeCCCCce----eecccCC-CCcEEEEEecCCCCeEEEEc-----------------CCCcEEEEE
Q 016257          128 AAG-GV--DGHLRIMHWPSLRI----ILDEPKA-HKSVLDMDFSLDSEFLATTS-----------------TDGSARIWK  182 (392)
Q Consensus       128 ~~~-~~--dg~i~i~d~~~~~~----~~~~~~~-~~~i~~i~~~~~~~~l~~~~-----------------~d~~i~vwd  182 (392)
                      +++ ..  +..|.+|+++....    +...... -....++.+.++|.+.++..                 ..|.+..+|
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            444 22  46788887754321    1112211 13688999999998777654                 123455555


Q ss_pred             CCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC-cee--eeeecccCCCcEEEEECC-CCCE
Q 016257          183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNK--IGHKRLLRKPASVLSISL-DGKY  258 (392)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~  258 (392)
                      .  ++. ..+.... ...+.++|+||++.+    .++.+..+.|..|++.. ++.  ...+ ........+++.+ +|++
T Consensus       210 ~--~~~-~~~~~~l-~~pNGia~spDg~~l----Yvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~l  280 (355)
T 3sre_A          210 P--NDV-RVVAEGF-DFANGINISPDGKYV----YIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDL  280 (355)
T ss_dssp             T--TCC-EEEEEEE-SSEEEEEECTTSSEE----EEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCE
T ss_pred             C--CeE-EEeecCC-cccCcceECCCCCEE----EEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcE
Confidence            4  332 2222222 246899999999873    35556678999999863 222  1222 2245567789998 5887


Q ss_pred             EEEEeCC-CcEEEEecC
Q 016257          259 LAMGSKD-GDICVVDVK  274 (392)
Q Consensus       259 l~~~~~d-g~i~iwd~~  274 (392)
                      .+++..+ +.|..|+..
T Consensus       281 wva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          281 WVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEEEESCHHHHHSCCTT
T ss_pred             EEEecCCceEEEEECCC
Confidence            7766533 344445543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.96  E-value=0.0044  Score=58.18  Aligned_cols=223  Identities=7%  Similarity=-0.109  Sum_probs=125.1

Q ss_pred             CCCcEEEEeCCCCc-eeecccCCCCcEEEEEecCCCCeEEEEc-CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCC
Q 016257          132 VDGHLRIMHWPSLR-IILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (392)
Q Consensus       132 ~dg~i~i~d~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (392)
                      ....|+..++.... ........-.....++|++.++.|+.+. ..+.|..+++........+....-.....+++.+.+
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~   95 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   95 (619)
T ss_dssp             CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred             ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence            35678888887543 2222223334678999999776666554 467888898865432222222222358899999977


Q ss_pred             CcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeC--CCcEEEEecCCceeeeeeecccc
Q 016257          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK--DGDICVVDVKKMEINHWSKRLHL  287 (392)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~  287 (392)
                      ..+    ..+....+.|.+.++............-.....+++.|.+.+|+....  .+.|...++......... ... 
T Consensus        96 ~~l----y~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~-~~~-  169 (619)
T 3s94_A           96 EKL----YWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII-NSE-  169 (619)
T ss_dssp             TEE----EEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSS-
T ss_pred             CEE----EEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE-eCC-
Confidence            653    355677889999999864432222233345678999997666665543  456777777654333322 222 


Q ss_pred             CcceEEEEEeeCCCeEEEEe-CCCeEEEEEeecCcccccee-eeeeeeeeeeeceEEEEee-ecceeeeecccccc
Q 016257          288 GTSIALVEFCPTQRVVLTAS-KEWGAMITKLTVPADWKEWQ-IYSLLLALFLASAVVFYIF-FENSDSFWNFPVAR  360 (392)
Q Consensus       288 ~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~d~~i~~W~~~~~~  360 (392)
                      ......++++++++.|+.+. ..+.|...++.......... ....+.+.......++.+- ..+.|..-+..+|+
T Consensus       170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEEEESSSCC
T ss_pred             CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCc
Confidence            45688999999766665554 45677777766433222211 1223444444455444443 34556666665554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.88  E-value=0.0088  Score=50.52  Aligned_cols=177  Identities=8%  Similarity=0.007  Sum_probs=103.3

Q ss_pred             EEEecCCCCEEEEEeCC--------------CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEc--C--CCcE
Q 016257          117 CLSFSVDGSRFAAGGVD--------------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS--T--DGSA  178 (392)
Q Consensus       117 ~~~~s~~~~~l~~~~~d--------------g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~--d~~i  178 (392)
                      +--+++++.+|+.....              ..|+..++...+... +...  .  ...|++++++|+-..  .  +..|
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~I  131 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD--P--CIYASLIGNYIYYLHYDTQTATSL  131 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS--C--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC--C--ccEEEEeCCEEEEEeecCCCCceE
Confidence            34567889988877543              357777776654322 2111  1  236788888888765  3  3455


Q ss_pred             EEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCE
Q 016257          179 RIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY  258 (392)
Q Consensus       179 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~  258 (392)
                      +.-++. +.....+..+.   +  .+++++++.++    .+......|.+.++..+.......   .... ..++|++.+
T Consensus       132 y~~~~d-Gs~~~~lt~~~---~--~~~~~~g~~iy----~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~  197 (302)
T 3s25_A          132 YRIRID-GEEKKKIKNHY---L--FTCNTSDRYFY----YNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTN  197 (302)
T ss_dssp             EEEETT-SCCCEEEESSC---C--CCSEEETTEEE----EECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTE
T ss_pred             EEEECC-CCCeEEEeCCC---c--eEeeEECCEEE----EEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCE
Confidence            566664 33344444332   2  45788888732    344456789999988765443322   2222 346699999


Q ss_pred             EEEEeCC--CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          259 LAMGSKD--GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       259 l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      |+-...+  ..|..-++.........     ...+  ..|+|++++|+.++..+.-.|+.+..
T Consensus       198 iy~t~~~~~~~I~~~~ldG~~~~~Lt-----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~  253 (302)
T 3s25_A          198 VYYMDVNRDNAIVHVNINNPNPVVLT-----EANI--EHYNVYGSLIFYQRGGDNPALCVVKN  253 (302)
T ss_dssp             EEEEEGGGTTEEEEECSSSCCCEECS-----CSCE--EEEEEETTEEEEEECSSSCEEEEEET
T ss_pred             EEEEEcCCCcEEEEEECCCCCeEEEe-----CCCc--ceEEECCCEEEEEECCCCcEEEEEEC
Confidence            8876643  35767777766544332     2233  34888999887764432344555543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.82  E-value=0.013  Score=50.59  Aligned_cols=184  Identities=12%  Similarity=0.102  Sum_probs=106.1

Q ss_pred             eEEEEecCCCCEEEEE------------eCCCcEEEEeCCCC--ce-eecccCC-----CCcEEEEEecC--CCC-eEEE
Q 016257          115 QKCLSFSVDGSRFAAG------------GVDGHLRIMHWPSL--RI-ILDEPKA-----HKSVLDMDFSL--DSE-FLAT  171 (392)
Q Consensus       115 v~~~~~s~~~~~l~~~------------~~dg~i~i~d~~~~--~~-~~~~~~~-----~~~i~~i~~~~--~~~-~l~~  171 (392)
                      ...+...|+|..++++            ..+|.|.++|.++.  +. ...+.+.     .-....+.+.+  ++. +|++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            3555666666433333            16899999998732  22 1122221     12567777755  454 3444


Q ss_pred             Ec-C--CCcEEEEECCCCe----eeEEEecCCCcceEEEEecCCCCcceEEEEEEeC-----------------CccEEE
Q 016257          172 TS-T--DGSARIWKTEDGV----AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-----------------DKALLA  227 (392)
Q Consensus       172 ~~-~--d~~i~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----------------~d~~i~  227 (392)
                      +. .  +.+|.+|++....    .+..+....-.....+++.++|..     .++..                 ..+.|.
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~f-----yvt~~~~ftd~~~~~~e~~~~~~~g~vy  206 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHF-----YATNDHYFIDPYLKSWEMHLGLAWSFVT  206 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEE-----EEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCE-----EecCCcEeCCcccccchhhccCCccEEE
Confidence            42 2  4678888776432    223333333345788999999873     22222                 235666


Q ss_pred             EEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEe-CCCcEEEEecCC-ceee--eeeeccccCcceEEEEEee-CCCe
Q 016257          228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKK-MEIN--HWSKRLHLGTSIALVEFCP-TQRV  302 (392)
Q Consensus       228 v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~-~~~~--~~~~~~~~~~~i~~~~~s~-~~~~  302 (392)
                      -+|..  +. ......-...+.++|+||++.|+.+. ..+.|..|++.. ++..  ..+  .. .+..-.+++.+ +|.+
T Consensus       207 r~d~~--~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~-~g~PDGi~vD~e~G~l  280 (355)
T 3sre_A          207 YYSPN--DV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SF-DTLVDNISVDPVTGDL  280 (355)
T ss_dssp             EECTT--CC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--EC-SSEEEEEEECTTTCCE
T ss_pred             EEECC--eE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eC-CCCCceEEEeCCCCcE
Confidence            66653  22 12222223567899999998887765 467899999863 3322  222  12 46678899999 5987


Q ss_pred             EEEEeCC
Q 016257          303 VLTASKE  309 (392)
Q Consensus       303 l~~~~~d  309 (392)
                      .+++..+
T Consensus       281 wva~~~~  287 (355)
T 3sre_A          281 WVGCHPN  287 (355)
T ss_dssp             EEEEESC
T ss_pred             EEEecCC
Confidence            7766544

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.81  E-value=0.0027  Score=55.12  Aligned_cols=191  Identities=12%  Similarity=0.059  Sum_probs=94.2

Q ss_pred             CCCeeEEEEcCC---CCeEEEEeC-C-----CeEEEEEEeCCccc--eeeccccCCC-CCCCCCeEEEEecCCCCEEEEE
Q 016257           63 EGDPMTIAVNPS---GDDFVCSTT-N-----GGCKLFEVYGGATD--INLLAKKMPP-LQDAGPQKCLSFSVDGSRFAAG  130 (392)
Q Consensus        63 ~~~v~~~~~sp~---~~~l~~~~~-d-----~~i~iw~~~~~~~~--~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~  130 (392)
                      ......++|+|+   +..|+.+.. .     +.|..++.......  ..+.. ..+. .........++|.|||.+.++.
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~-~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLD-GIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEE-EECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEE-eCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            457899999998   555554433 2     56777877643211  11111 1110 0111123689999999655553


Q ss_pred             eC-------------CCcEEEEeCCCCce-------------eecccCCCCcEEEEEecC-CCCeEEEEcCCCcE-----
Q 016257          131 GV-------------DGHLRIMHWPSLRI-------------ILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSA-----  178 (392)
Q Consensus       131 ~~-------------dg~i~i~d~~~~~~-------------~~~~~~~~~~i~~i~~~~-~~~~l~~~~~d~~i-----  178 (392)
                      +.             .|.|.-++... +.             ...+.........++|+| +++++++-.....+     
T Consensus       153 G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~  231 (352)
T 2ism_A          153 GEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGH  231 (352)
T ss_dssp             CCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CC
T ss_pred             CCCCCCccccCCCCCceEEEEEcCCC-CCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCC
Confidence            32             14565555432 11             001111123467789999 55544443222221     


Q ss_pred             -EEEECCCCe------------------eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee---
Q 016257          179 -RIWKTEDGV------------------AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---  236 (392)
Q Consensus       179 -~vwd~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---  236 (392)
                       .+.-+..+.                  +...+ .++ .....++| .++..     +++....+.|...+++....   
T Consensus       232 dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-~~~-~ap~G~~~-~~G~l-----~v~~~~~~~v~~v~~~~~~~~~~  303 (352)
T 2ism_A          232 DEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-PQG-FPPGNLAF-FRGDL-----YVAGLRGQALLRLVLEGERGRWR  303 (352)
T ss_dssp             CEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-TTC-CCEEEEEE-ETTEE-----EEEETTTTEEEEEEEEEETTEEE
T ss_pred             eEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-CCC-CCCcceEE-ECCEE-----EEEECCCCEEEEEEECCCCccee
Confidence             222222222                  11122 111 23456777 34432     34455566777777654321   


Q ss_pred             ---eeeecccCCCcEEEEECCCCCEEEEEe
Q 016257          237 ---IGHKRLLRKPASVLSISLDGKYLAMGS  263 (392)
Q Consensus       237 ---~~~~~~~~~~v~~~~~s~~~~~l~~~~  263 (392)
                         ...+......+..+++.|||.+.++..
T Consensus       304 ~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          304 VLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             EEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             ecchheecccCCCeeEEEECCCCcEEEEEe
Confidence               112212235788999999997766653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.78  E-value=0.032  Score=53.98  Aligned_cols=230  Identities=11%  Similarity=0.022  Sum_probs=133.9

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  142 (392)
                      ...|.++.-..+| +|..|..+| +..||-...+   ....  .. ......|.++.-..+| .|..|+.+| +..||..
T Consensus        21 ~n~V~~I~qD~~G-~lWigT~~G-L~ryDG~~~~---~~~~--~~-~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~   90 (758)
T 3ott_A           21 ASVVSCFLQDSEG-LIWIGSNKG-LFSYDGYSTQ---QHFT--YG-ENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYR   90 (758)
T ss_dssp             CCCEEEEEECTTS-CEEEEESSC-EEEECSSCEE---ECSC--TT-STTSSCEEEEEEETTT-EEEEEETTE-EEEEETT
T ss_pred             cceEEEEEECCCC-CEEEEECCC-ccccCCCceE---EEEc--cC-CCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCC
Confidence            4679999888777 555667888 6666632211   1110  00 1123568888777766 566666665 7899987


Q ss_pred             CCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe----cCCCcceEEEEecCCCCcceEEEEE
Q 016257          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT----RNSDEKIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       143 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~  218 (392)
                      +.+...........|.++.. .++ .|..++.+ -+..+|..+++.. .+.    ......|.++....++.      +.
T Consensus        91 ~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~------lW  160 (758)
T 3ott_A           91 ADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQ------IY  160 (758)
T ss_dssp             TTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCC------EE
T ss_pred             CCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCC------EE
Confidence            75432211112235776654 344 45556655 5888998765433 221    11223578888877777      34


Q ss_pred             EeCCccEEEEEeCCCceeeeeecc-----cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEE
Q 016257          219 QRGDKALLAVYDISTWNKIGHKRL-----LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL  293 (392)
Q Consensus       219 ~~~~d~~i~v~d~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~  293 (392)
                      .+... -+..+|..+.+.......     ....|.++...+++..|..|+.. -+..+|..+++..... ... ...|.+
T Consensus       161 igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~-Gl~~~~~~~~~~~~~~-~l~-~~~i~~  236 (758)
T 3ott_A          161 VGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEG-YLFQYFPSTGQIKQTE-AFH-NNSIKS  236 (758)
T ss_dssp             EEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEE-EEEEEETTTTEEEEEE-EEE-EEEEEE
T ss_pred             EEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECC-CCeEEcCCCCeEEecc-CCC-CCeEEE
Confidence            44444 477888776543211111     12347888887777766666643 4888998877654322 122 456888


Q ss_pred             EEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          294 VEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       294 ~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      +....+|.+.+ |+. +.+.+++..
T Consensus       237 i~~d~~g~lWi-gT~-~Gl~~~~~~  259 (758)
T 3ott_A          237 LALDGNGDLLA-GTD-NGLYVYHND  259 (758)
T ss_dssp             EEECTTCCEEE-EET-TEEEEECCT
T ss_pred             EEEcCCCCEEE-EeC-CceeEEecC
Confidence            88877777554 444 456666654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.76  E-value=0.0097  Score=50.25  Aligned_cols=184  Identities=9%  Similarity=0.007  Sum_probs=93.1

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCc---eee--cccCCCCcEEEEEecCCCCeEEEEcCC-----CcEEEEECCCCe
Q 016257          123 DGSRFAAGGVD-----GHLRIMHWPSLR---IIL--DEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGV  187 (392)
Q Consensus       123 ~~~~l~~~~~d-----g~i~i~d~~~~~---~~~--~~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~  187 (392)
                      ++..++.|+.+     ..+.+||+.+.+   ...  .+.........+.+  +++.++.|+.+     ..+.+||+.+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            56677777654     468999988765   322  12211112222222  56677777644     358899988765


Q ss_pred             eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCc-----cEEEEEeCCCceeee--eecccCCCcEEEEECCCCCEEE
Q 016257          188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDISTWNKIG--HKRLLRKPASVLSISLDGKYLA  260 (392)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d-----~~i~v~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~  260 (392)
                      -...-..+....-.+++.. ++..     .+.++.+     ..+.+||+.+.+-..  .+.........+.+  ++++++
T Consensus       140 W~~~~~~p~~r~~~~~~~~-~~~i-----yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v  211 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVVA-SGVI-----YCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYV  211 (301)
T ss_dssp             EEEEEECSSCCBSCEEEEE-TTEE-----EEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEE
T ss_pred             EEECCCCCCCcccceEEEE-CCEE-----EEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEE
Confidence            4332221111111222222 3332     3444432     468899987654321  12111112223333  567777


Q ss_pred             EEeCC-----CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCC-----eEEEEEee
Q 016257          261 MGSKD-----GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW-----GAMITKLT  318 (392)
Q Consensus       261 ~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~iw~~~  318 (392)
                      .|+.+     ..+.+||+.+.+-...............+  .-++++++.|+.++     .+.+||+.
T Consensus       212 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~  277 (301)
T 2vpj_A          212 VGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT--VLRGRLYAIAGYDGNSLLSSIECYDPI  277 (301)
T ss_dssp             ECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBCSSSBEEEEEEEETT
T ss_pred             EeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE--EECCEEEEEcCcCCCcccccEEEEcCC
Confidence            77764     46999999887654332111101222222  23777778887653     45555554

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.71  E-value=0.0064  Score=51.38  Aligned_cols=190  Identities=12%  Similarity=0.028  Sum_probs=93.9

Q ss_pred             CCCeEEEEeCC-----CeEEEEEEeCCccc-eeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC-----CcEEEEeCC
Q 016257           74 SGDDFVCSTTN-----GGCKLFEVYGGATD-INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWP  142 (392)
Q Consensus        74 ~~~~l~~~~~d-----~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~  142 (392)
                      ++..++.|+.+     ..+.+||..+.+.. ..... ..+.  .......+.+  +++.++.|+.+     ..+.+||+.
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~-~~p~--~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~  136 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVA-PMNV--RRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPN  136 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEEC-CCSS--CCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECC-CCCC--CccceeEEEE--CCEEEEEcccCCCcccceEEEEcCC
Confidence            56677777754     35888887665410 11111 1110  1111122222  56666676643     358899988


Q ss_pred             CCceeec--ccCCCCcEEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257          143 SLRIILD--EPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (392)
Q Consensus       143 ~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (392)
                      +.+....  ..........+.+  +++.++.|+.+     ..+.+||+.+.+-...-..+....-.+++.. ++. +   
T Consensus       137 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~-i---  209 (301)
T 2vpj_A          137 IDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-NDH-I---  209 (301)
T ss_dssp             TTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE-E---
T ss_pred             CCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CCE-E---
Confidence            7654321  1211112222222  56677777654     4588999987754332111111111122222 332 1   


Q ss_pred             EEEEeCC-----ccEEEEEeCCCceee--eeecccCCCcEEEEECCCCCEEEEEeCC-----CcEEEEecCCcee
Q 016257          216 CTVQRGD-----KALLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEI  278 (392)
Q Consensus       216 ~~~~~~~-----d~~i~v~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~  278 (392)
                       ++.++.     ...+.+||+++.+-.  ..+.........+.+  ++++++.|+.+     ..+.+||+++.+-
T Consensus       210 -~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  281 (301)
T 2vpj_A          210 -YVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSW  281 (301)
T ss_dssp             -EEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred             -EEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence             344443     256899999865432  222111122223333  66777777765     3578888877654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.70  E-value=0.056  Score=54.52  Aligned_cols=282  Identities=9%  Similarity=0.061  Sum_probs=145.5

Q ss_pred             CCCeeEEEEcCC------CCeEEEEeC-CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEec--CCCCEEEEEeCC
Q 016257           63 EGDPMTIAVNPS------GDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS--VDGSRFAAGGVD  133 (392)
Q Consensus        63 ~~~v~~~~~sp~------~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~d  133 (392)
                      .+.|.|+++.|.      +++++.|.. |++++|+++.+.+......   ..   ......++.+.  ....+|..|-.|
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~---L~---~~~~p~si~l~~~~~~~~L~igl~d  626 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEM---LG---GEIIPRSILMTTFESSHYLLCALGD  626 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEE---CC---SSCCEEEEEEEEETTEEEEEEEETT
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEE---CC---CCCCCcEEEEEEeCCCcEEEEEeCC
Confidence            568999999863      368999986 9999999997654332211   11   11233444333  234578889999


Q ss_pred             CcEEEEeCC--CCceeec--ccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCC
Q 016257          134 GHLRIMHWP--SLRIILD--EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (392)
Q Consensus       134 g~i~i~d~~--~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (392)
                      |.+.-+.+.  +++....  ..-...++.=..+...+..-+.+..++...++.-+ ++.... ......--....|+...
T Consensus       627 G~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~se~  704 (1158)
T 3ei3_A          627 GALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNSDG  704 (1158)
T ss_dssp             SEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCCCEEEEECCSS
T ss_pred             CeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHhceEeccCccc
Confidence            988666553  4443211  12223344444444444433333334555555543 222211 11112112334454432


Q ss_pred             -CcceEEEEEEeCCccEEEEEeCCCcee--eeeecccCCCcEEEEECCCCCEEEEEeCC---------------------
Q 016257          210 -TKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKD---------------------  265 (392)
Q Consensus       210 -~~~~~~~~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------------------  265 (392)
                       ..  .  ++. ..++.++|.-+...+.  ++.+ .....++.++++|+.+.++.+..+                     
T Consensus       705 ~~~--g--~v~-~~~~~LrI~~i~~~~~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  778 (1158)
T 3ei3_A          705 YPD--S--LAL-ANNSTLTIGTIDEIQKLHIRTV-PLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQA  778 (1158)
T ss_dssp             STT--E--EEE-ECSSCEEEEEECCSSSEEEEEE-ECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHC
T ss_pred             CCC--c--EEE-EcCCceEEEEecccCCeeEEEE-eCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhh
Confidence             11  1  222 2234477776643222  1122 224567788888877665544311                     


Q ss_pred             ----------------------------CcEEEEecCCceeeeeeeccccCcceEEEEE---eeC-CCeEEEEe------
Q 016257          266 ----------------------------GDICVVDVKKMEINHWSKRLHLGTSIALVEF---CPT-QRVVLTAS------  307 (392)
Q Consensus       266 ----------------------------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~---s~~-~~~l~~~~------  307 (392)
                                                  +.|++.|..+.+.+..+.-.. ...+.+++.   ..+ ..+|+.|+      
T Consensus       779 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~-nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~  857 (1158)
T 3ei3_A          779 LSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ-NEYALSLVSCKLGKDPNTYFIVGTAMVYPE  857 (1158)
T ss_dssp             SEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT-TEEEEEEEEECCTTCCCCEEEEEEEECCTT
T ss_pred             hhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC-CcceEEEEEEEEccCCCEEEEEEeeecCCC
Confidence                                        236777777776655443333 455555553   222 35888876      


Q ss_pred             ----CCCeEEEEEeecCccccce-e--eeeeeeeeeeeceEEEEeeecceeeeeccccccc
Q 016257          308 ----KEWGAMITKLTVPADWKEW-Q--IYSLLLALFLASAVVFYIFFENSDSFWNFPVARN  361 (392)
Q Consensus       308 ----~dg~i~iw~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~  361 (392)
                          ..|.|.++++... ++... .  +.-.+.+...-.+. +.++..+++++|++...+.
T Consensus       858 e~~~~~Gri~vf~v~~~-kL~lv~~~~v~g~v~al~~~~g~-Lla~ig~~l~vy~l~~~~~  916 (1158)
T 3ei3_A          858 EAEPKQGRIVVFQYSDG-KLQTVAEKEVKGAVYSMVEFNGK-LLASINSTVRLYEWTTEKE  916 (1158)
T ss_dssp             CSSCCCEEEEEEEEETT-EEEEEEEEEESSCEEEEEEETTE-EEEEETTEEEEEEECTTSC
T ss_pred             CCCCCceEEEEEEEECC-EEEEEEEEEcCCcCEEEeeeCCE-EEEEcCCEEEEEECCCCce
Confidence                3489999999732 22211 1  11112222222333 4445568899999876543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.69  E-value=0.011  Score=50.06  Aligned_cols=188  Identities=8%  Similarity=0.016  Sum_probs=94.8

Q ss_pred             CCCeEEEEeCC----CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC------CcEEEEeCCC
Q 016257           74 SGDDFVCSTTN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHWPS  143 (392)
Q Consensus        74 ~~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i~d~~~  143 (392)
                      ++..++.|+.+    ..+.+||..+.+....  . ..+.  .......+.+  +++.++.|+.+      ..+.+||..+
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~--~-~~p~--~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~  127 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSK--L-GPPT--PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRT  127 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEE--E-CCSS--CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTT
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEEC--C-CCCc--cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCC
Confidence            56677777654    5677888766543211  1 1110  1111122222  56677777654      4689999887


Q ss_pred             Cceeec--ccCCCCcEEEEEecCCCCeEEEEcC---------CCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcc
Q 016257          144 LRIILD--EPKAHKSVLDMDFSLDSEFLATTST---------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (392)
Q Consensus       144 ~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (392)
                      .+-...  +.........+.+  +++.++.|+.         -..+.+||+.+.+-...-.......-.+++.. ++. +
T Consensus       128 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-i  203 (306)
T 3ii7_A          128 ESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDK-I  203 (306)
T ss_dssp             TEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE-E
T ss_pred             CceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCE-E
Confidence            654322  1111111222222  5666666653         34588999987754332111111111222222 333 2


Q ss_pred             eEEEEEEeCCc-----cEEEEEeCCCcee--eeeecccCCCcEEEEECCCCCEEEEEeCC-----CcEEEEecCCcee
Q 016257          213 FLFCTVQRGDK-----ALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEI  278 (392)
Q Consensus       213 ~~~~~~~~~~d-----~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~  278 (392)
                          .+.++.+     ..+.+||+.+.+-  +..+........++.+  ++++++.|+.+     ..+.+||..+.+-
T Consensus       204 ----~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W  275 (306)
T 3ii7_A          204 ----FAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW  275 (306)
T ss_dssp             ----EEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred             ----EEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence                3444432     4688999887532  2222222223333333  66778888754     4588899887653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.65  E-value=0.023  Score=48.78  Aligned_cols=238  Identities=13%  Similarity=0.102  Sum_probs=124.3

Q ss_pred             CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC---CCEEEEE-e--CCCc
Q 016257           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAG-G--VDGH  135 (392)
Q Consensus        62 h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~-~--~dg~  135 (392)
                      .-.....|+|.|+|+.+++--..|.|++++..+++.. .+................++++|+   +..|+.. +  .++.
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            3567899999999987776544888888865443321 111100011123567899999995   3455443 2  3455


Q ss_pred             EEEEeCCCC----------ceeec-ccC-CCCcEEEEEecCCCCeEEEEcC-------------CCcEEEEECCCCe---
Q 016257          136 LRIMHWPSL----------RIILD-EPK-AHKSVLDMDFSLDSEFLATTST-------------DGSARIWKTEDGV---  187 (392)
Q Consensus       136 i~i~d~~~~----------~~~~~-~~~-~~~~i~~i~~~~~~~~l~~~~~-------------d~~i~vwd~~~~~---  187 (392)
                      |.-|.+..+          +.+.. +.. ....-..|.|.|||.++++.+.             .|.|.-.+....-   
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~  188 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG  188 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence            666655431          11111 111 1113457999999987776542             2445444543210   


Q ss_pred             ----eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee------------------eeeecccCC
Q 016257          188 ----AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK------------------IGHKRLLRK  245 (392)
Q Consensus       188 ----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~------------------~~~~~~~~~  245 (392)
                          ....+...+. ....++|+|++.. +   ..-.+.++.=.|--+..+..                  +..+..+..
T Consensus       189 nPf~~~~i~a~G~R-Np~Gla~dp~G~L-~---~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~  263 (347)
T 3das_A          189 NPFPGSPVYSYGHR-NVQGLAWDDKQRL-F---ASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA  263 (347)
T ss_dssp             CSSTTCCEEEBCCS-BCCEEEECTTCCE-E---EEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred             CCCCCCeEEeeCCC-CcceEEECCCCCE-E---EEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence                1123333333 3678999998662 1   12222222111211122111                  111111112


Q ss_pred             CcEEEEECCCCCEEEEEeCCCcEEEEecCCceee---eeeeccccCcceEEEEEeeCCCeEEEEe
Q 016257          246 PASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN---HWSKRLHLGTSIALVEFCPTQRVVLTAS  307 (392)
Q Consensus       246 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~  307 (392)
                      ....++|. +|..+...-..+.|....+......   ..+.... ...+..++..|||.++++..
T Consensus       264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~-~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGE-YGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             CEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTT-SSCEEEEEEEETTEEEEEEC
T ss_pred             CCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCC-CCCccEEEECCCCcEEEEEc
Confidence            44566775 3555555555667777777655421   1121222 46899999999998766654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.61  E-value=0.03  Score=49.02  Aligned_cols=238  Identities=11%  Similarity=0.096  Sum_probs=147.3

Q ss_pred             EEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-e
Q 016257           68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-I  146 (392)
Q Consensus        68 ~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~  146 (392)
                      +.-.+|..+.||.-. ..+++|+|+++.........        ...|.-=.|-.+. .|+..+ +..|+-|+++... +
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~--------~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P  138 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM--------TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQP  138 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC--------SSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCC
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec--------CCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCc
Confidence            455688888777654 67899999988775544432        2355666665444 455444 5679999997533 3


Q ss_pred             eecccCCC----CcEEEEEecCCCCeEEEEc-------CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257          147 ILDEPKAH----KSVLDMDFSLDSEFLATTS-------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (392)
Q Consensus       147 ~~~~~~~~----~~i~~i~~~~~~~~l~~~~-------~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (392)
                      ...+..|.    ..|..-..+++.++++..+       -.|.+.+|..+.+. .+.+.+| ......+....+.....++
T Consensus       139 ~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGh-aa~F~~~~~~g~~~~~~lf  216 (494)
T 1bpo_A          139 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGH-AASFAQFKMEGNAEESTLF  216 (494)
T ss_dssp             EEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCS-EEEEEEEECTTCSSEEEEE
T ss_pred             hhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheee-eeeeEEEecCCCCCCceEE
Confidence            33333332    2677888899999877543       23678899986543 3444433 2222233332222222233


Q ss_pred             EEEEeC-CccEEEEEeCCCc---ee------eeeecc---cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee
Q 016257          216 CTVQRG-DKALLAVYDISTW---NK------IGHKRL---LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (392)
Q Consensus       216 ~~~~~~-~d~~i~v~d~~~~---~~------~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  282 (392)
                      +++.-. ..+.+++.++...   ..      +..+..   ...-..++..|+.-..++.-+.-|.|++||+.++.++..-
T Consensus       217 ~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~n  296 (494)
T 1bpo_A          217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  296 (494)
T ss_dssp             EEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeee
Confidence            333332 3478999988542   11      111111   1222347888888889999999999999999999988765


Q ss_pred             eccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257          283 KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       283 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      . .. ..+|...+-.....-++.....|.|.--.++..
T Consensus       297 r-Is-~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          297 R-IS-GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             E-CC-SSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             c-cc-CCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            3 33 567766666666666777778888877777644

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.59  E-value=0.0041  Score=56.06  Aligned_cols=158  Identities=9%  Similarity=-0.013  Sum_probs=95.1

Q ss_pred             cEEEEEecC-CCCeEEEEcC-CCcEEEEECCCCeeeEEEecCC--CcceEEEEe-------cCCCCcceEEEEEEeCCc-
Q 016257          156 SVLDMDFSL-DSEFLATTST-DGSARIWKTEDGVAWTFLTRNS--DEKIELCRF-------SKDGTKPFLFCTVQRGDK-  223 (392)
Q Consensus       156 ~i~~i~~~~-~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~--~~~v~~~~~-------~~~~~~~~~~~~~~~~~d-  223 (392)
                      ....|+|+| +...|+.+.. .+.|++.|+.++..........  -.....++|       ++++..+    +++...+ 
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~l----yvad~~~~  215 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYM----IVAIDYDG  215 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEE----EEEECCCT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEE----EEEeCCCC
Confidence            567899998 3554555443 4679999998776655443321  124789999       9999852    2332222 


Q ss_pred             -----cEEEEEeCCC-ceee-----eeecccCCCcEEEEECCCC-CEEEEEeCCCcEEEEecC-------Ccee------
Q 016257          224 -----ALLAVYDIST-WNKI-----GHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVK-------KMEI------  278 (392)
Q Consensus       224 -----~~i~v~d~~~-~~~~-----~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~-------~~~~------  278 (392)
                           ..+.+++... +...     ..+... .....++++|++ .++++-..++.|..+|+.       ++..      
T Consensus       216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~  294 (496)
T 3kya_A          216 KGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK  294 (496)
T ss_dssp             TGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred             CcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence                 2466776443 1211     112111 234577899954 555555577889999998       5543      


Q ss_pred             -----e-eeeeccccCcceEEEEEeeCCCeEEEE-eCCCeEEEEEeec
Q 016257          279 -----N-HWSKRLHLGTSIALVEFCPTQRVVLTA-SKEWGAMITKLTV  319 (392)
Q Consensus       279 -----~-~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~iw~~~~  319 (392)
                           . ....... ......++|+|+|+.|+.+ +....|+.++...
T Consensus       295 ~~~g~~~~l~~~~~-~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          295 NNPNTFKQLFTIAD-PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             GCTTTEEEEEECSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ccccccceeEecCC-CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence                 1 1111222 4457899999999965444 4567888776653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.57  E-value=0.041  Score=49.45  Aligned_cols=110  Identities=11%  Similarity=0.141  Sum_probs=61.2

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeecc-cc-CCCCCCCCCeEEEEecCC---CCEEEEEeC-----
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLA-KK-MPPLQDAGPQKCLSFSVD---GSRFAAGGV-----  132 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~-~~~~~~~~~v~~~~~s~~---~~~l~~~~~-----  132 (392)
                      -.....|+|.|+|+++++-...+.|++++..++... .+.. .. ............++|+|+   +..|+....     
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~-~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVK-TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe-EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            456789999999987776433346777764433321 1111 00 000113467789999995   556655442     


Q ss_pred             --------CCcEEEEeCCCC-------ceeec-ccC-CCCcEEEEEecCCCCeEEEEc
Q 016257          133 --------DGHLRIMHWPSL-------RIILD-EPK-AHKSVLDMDFSLDSEFLATTS  173 (392)
Q Consensus       133 --------dg~i~i~d~~~~-------~~~~~-~~~-~~~~i~~i~~~~~~~~l~~~~  173 (392)
                              ...|.-++....       +.+.. +.. .......|+|.|||.++++.+
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                    124555554322       11211 111 112478899999998777654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.56  E-value=0.014  Score=49.43  Aligned_cols=223  Identities=13%  Similarity=0.058  Sum_probs=109.1

Q ss_pred             eEEEEeC--CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC----CcEEEEeCCCCceeec-
Q 016257           77 DFVCSTT--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRIMHWPSLRIILD-  149 (392)
Q Consensus        77 ~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~-  149 (392)
                      .++.|+.  ...+.+||..+.+-..  .. ..+.  ....-..+.  -++..++.|+.+    ..+.+||..+.+.... 
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~--~~-~~p~--~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~   86 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTD--IR-CPFE--KRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKL   86 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEE--CC-CCSC--CCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCCceEEEecCCCCCEec--CC-CCCc--ccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECC
Confidence            4445554  3457788876654221  11 1110  111112222  256667777654    5688999887654322 


Q ss_pred             -ccCCCCcEEEEEecCCCCeEEEEcCC------CcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCC
Q 016257          150 -EPKAHKSVLDMDFSLDSEFLATTSTD------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD  222 (392)
Q Consensus       150 -~~~~~~~i~~i~~~~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  222 (392)
                       +.........+.+  +++.++.|+.+      ..+.+||..+.+-...-..+....-.+++.. ++. +    .+.++.
T Consensus        87 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~-i----yv~GG~  158 (306)
T 3ii7_A           87 GPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NGL-I----YVCGGS  158 (306)
T ss_dssp             CCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE-E----EEECCE
T ss_pred             CCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CCE-E----EEECCC
Confidence             2211112222222  56677777754      4588999987754332111111111122222 333 2    233332


Q ss_pred             ---------ccEEEEEeCCCcee--eeeecccCCCcEEEEECCCCCEEEEEeCC-----CcEEEEecCCceeeeeeeccc
Q 016257          223 ---------KALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEINHWSKRLH  286 (392)
Q Consensus       223 ---------d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~  286 (392)
                               ...+.+||..+.+-  +..+......-..+.+  ++++++.|+.+     ..+.+||+.+.+-........
T Consensus       159 ~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~  236 (306)
T 3ii7_A          159 LGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW  236 (306)
T ss_dssp             ESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSC
T ss_pred             CCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC
Confidence                     35588999887542  2212111122222333  56777777653     468999998876443321111


Q ss_pred             cCcceEEEEEeeCCCeEEEEeCC-----CeEEEEEee
Q 016257          287 LGTSIALVEFCPTQRVVLTASKE-----WGAMITKLT  318 (392)
Q Consensus       287 ~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iw~~~  318 (392)
                      .......+.+  ++++++.|+.+     ..+.+||+.
T Consensus       237 ~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~  271 (306)
T 3ii7_A          237 KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTE  271 (306)
T ss_dssp             CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETT
T ss_pred             CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCC
Confidence            1222233333  77788888754     355566654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.53  E-value=0.021  Score=48.21  Aligned_cols=184  Identities=13%  Similarity=0.076  Sum_probs=91.4

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCceeecc--cCCCCcEEEEEecCCCCeEEEEcCCC-----cEEEEECCCCeeeE
Q 016257          123 DGSRFAAGGVD-----GHLRIMHWPSLRIILDE--PKAHKSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVAWT  190 (392)
Q Consensus       123 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~d~-----~i~vwd~~~~~~~~  190 (392)
                      ++..++.|+.+     ..+.+||..+.+.....  .........+.+  +++.++.|+.++     .+.+||+.+.+-..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            56666777644     35889998876543221  111112222222  566777776553     47788987765433


Q ss_pred             EEecCCCcceEEEEecCCCCcceEEEEEEeCC-------ccEEEEEeCCCcee--eeeecccCCCcEEEEECCCCCEEEE
Q 016257          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-------KALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAM  261 (392)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~  261 (392)
                      .-..+....-.+++.. ++. +    .+.++.       ...+.+||..+.+-  +..+.........+.+  ++++++.
T Consensus       139 ~~~~p~~r~~~~~~~~-~~~-i----yv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~  210 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGVV-GGL-L----YAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAV  210 (302)
T ss_dssp             ECCCSSCCBSCEEEEE-TTE-E----EEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE
T ss_pred             cCCCCCcccCceEEEE-CCE-E----EEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEE
Confidence            2111111111222222 332 2    233332       24588999886542  2222211222222333  5677777


Q ss_pred             EeCC-----CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCC-----eEEEEEee
Q 016257          262 GSKD-----GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW-----GAMITKLT  318 (392)
Q Consensus       262 ~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~iw~~~  318 (392)
                      |+.+     ..+.+||+.+.+-...............+  ..++++++.|+.++     .+.+||+.
T Consensus       211 GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~  275 (302)
T 2xn4_A          211 GGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC--AVNGLLYVVGGDDGSCNLASVEYYNPT  275 (302)
T ss_dssp             CCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred             CCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE--EECCEEEEECCcCCCcccccEEEEcCC
Confidence            7754     46999999887644332111101111222  23677777777653     35556554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.50  E-value=0.11  Score=52.53  Aligned_cols=297  Identities=14%  Similarity=0.119  Sum_probs=155.9

Q ss_pred             CCceeeeecCCCCCc---ceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcC--CCCe
Q 016257            3 GGGTVTCGSWIKRPE---NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDD   77 (392)
Q Consensus         3 ~~~~v~~~~w~~~~~---~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~~~~   77 (392)
                      .+..|.|+++.|.++   +-.+++.|..     .+++++|+.++.-      .......+.. ...+.++.+..  ...+
T Consensus       552 l~~evscl~i~~~~~~~~~s~~~aVg~~-----~d~tv~I~sL~~l------~~~~~~~L~~-~~~p~si~l~~~~~~~~  619 (1158)
T 3ei3_A          552 MEHEVACLDITPLGDSNGLSPLCAIGLW-----TDISARILKLPSF------ELLHKEMLGG-EIIPRSILMTTFESSHY  619 (1158)
T ss_dssp             CSSCEEEEECCCCSSSTTCCSEEEEEET-----TTTEEEEEETTTC------CEEEEEECCS-SCCEEEEEEEEETTEEE
T ss_pred             CCCceEEEEeecCCCCcccccEEEEEEC-----CCCEEEEEECCCC------CeEEEEECCC-CCCCcEEEEEEeCCCcE
Confidence            456899999987431   1235555443     2678999998631      2222333322 12344444432  3357


Q ss_pred             EEEEeCCCeEEEEEEeC--CccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCC
Q 016257           78 FVCSTTNGGCKLFEVYG--GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK  155 (392)
Q Consensus        78 l~~~~~d~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  155 (392)
                      |..|-.||.+.-+.+..  +..... ....   + ...++.-..+...+..-+.+..+.-..+|.-+ ++....-... .
T Consensus       620 L~igl~dG~l~~~~~d~~tg~l~d~-r~~~---L-G~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~-~  692 (1158)
T 3ei3_A          620 LLCALGDGALFYFGLNIETGLLSDR-KKVT---L-GTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNL-K  692 (1158)
T ss_dssp             EEEEETTSEEEEEEECTTTCCEEEE-EEEE---C-CSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSS-S
T ss_pred             EEEEeCCCeEEEEEEcCCCCccccc-eeEE---c-CCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccCh-H
Confidence            88999999887776643  221111 0001   1 12355544454444433333335555555432 3332221111 1


Q ss_pred             cE-EEEEecCC--CCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEe--C---------
Q 016257          156 SV-LDMDFSLD--SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR--G---------  221 (392)
Q Consensus       156 ~i-~~i~~~~~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~---------  221 (392)
                      .+ ....|+..  .+-++..+ ++.++|..+.+-........+-+..++.++++|+.+..++...-..  .         
T Consensus       693 ~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~  771 (1158)
T 3ei3_A          693 EVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALR  771 (1158)
T ss_dssp             CCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESS
T ss_pred             HhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhh
Confidence            23 23345432  23355444 4569998876543333222233456888888887764222111000  0         


Q ss_pred             ---------------------------------CccEEEEEeCCCceeeeeecccC-CCcEEEE---ECCC-CCEEEEEe
Q 016257          222 ---------------------------------DKALLAVYDISTWNKIGHKRLLR-KPASVLS---ISLD-GKYLAMGS  263 (392)
Q Consensus       222 ---------------------------------~d~~i~v~d~~~~~~~~~~~~~~-~~v~~~~---~s~~-~~~l~~~~  263 (392)
                                                       ..+.|++.|..+++.+..+.... ..+.+++   |..+ ..++++|+
T Consensus       772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGT  851 (1158)
T 3ei3_A          772 PSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGT  851 (1158)
T ss_dssp             CCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEE
T ss_pred             hhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEe
Confidence                                             12457788877777665444322 2344443   3332 47888886


Q ss_pred             ----------CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccc
Q 016257          264 ----------KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADW  323 (392)
Q Consensus       264 ----------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  323 (392)
                                ..|.|++|++..++......... .+++++++-- +|+ |++|- ..++++|++...+.+
T Consensus       852 a~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v-~g~v~al~~~-~g~-Lla~i-g~~l~vy~l~~~~~L  917 (1158)
T 3ei3_A          852 AMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEV-KGAVYSMVEF-NGK-LLASI-NSTVRLYEWTTEKEL  917 (1158)
T ss_dssp             EECCTTCSSCCCEEEEEEEEETTEEEEEEEEEE-SSCEEEEEEE-TTE-EEEEE-TTEEEEEEECTTSCE
T ss_pred             eecCCCCCCCCceEEEEEEEECCEEEEEEEEEc-CCcCEEEeee-CCE-EEEEc-CCEEEEEECCCCceE
Confidence                      24789999997665444433333 7888888743 554 44443 369999999865443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.45  E-value=0.04  Score=46.42  Aligned_cols=189  Identities=15%  Similarity=0.122  Sum_probs=92.9

Q ss_pred             CCCeEEEEeCCC-----eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC-----cEEEEeCCC
Q 016257           74 SGDDFVCSTTNG-----GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPS  143 (392)
Q Consensus        74 ~~~~l~~~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~  143 (392)
                      ++..++.|+.++     .+.+||..+.+....  . ..+.  .......+.+  ++..++.|+.++     .+.+||+.+
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~--~-~~p~--~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~  133 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV--A-NMRD--RRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKS  133 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE--C-CCSS--CCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTT
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeC--C-CCCc--cccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCC
Confidence            566777776543     477777765542211  1 1110  1111122222  566777776553     578889887


Q ss_pred             Cceeec--ccCCCCcEEEEEecCCCCeEEEEcCC-------CcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE
Q 016257          144 LRIILD--EPKAHKSVLDMDFSLDSEFLATTSTD-------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (392)
Q Consensus       144 ~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-------~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (392)
                      .+-...  +.........+.+  +++.++.|+.+       ..+.+||+.+.+-...-.......-.+++.. ++. +  
T Consensus       134 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-i--  207 (302)
T 2xn4_A          134 NEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNL-L--  207 (302)
T ss_dssp             TEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE-E--
T ss_pred             CeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCE-E--
Confidence            654322  1111112222222  46666666542       3588999987654332111111111222222 333 1  


Q ss_pred             EEEEEeCCc-----cEEEEEeCCCceee--eeecccCCCcEEEEECCCCCEEEEEeCCC-----cEEEEecCCceee
Q 016257          215 FCTVQRGDK-----ALLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAMGSKDG-----DICVVDVKKMEIN  279 (392)
Q Consensus       215 ~~~~~~~~d-----~~i~v~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~  279 (392)
                        .+.++.+     ..+.+||..+.+-.  ..+.........+.  -++++++.|+.++     .+.+||+.+.+-.
T Consensus       208 --yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  280 (302)
T 2xn4_A          208 --YAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKWT  280 (302)
T ss_dssp             --EEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             --EEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence              3444432     46889998865422  22211111222222  2667777877653     4899998877644

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.43  E-value=0.016  Score=45.63  Aligned_cols=180  Identities=8%  Similarity=-0.105  Sum_probs=96.4

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCce-----eecccCC--CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCee------eE
Q 016257          124 GSRFAAGGVDGHLRIMHWPSLRI-----ILDEPKA--HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA------WT  190 (392)
Q Consensus       124 ~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~--~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~------~~  190 (392)
                      ...|++..+| +++.=...++..     .....+.  -..+..++|+|+|.+.++  .+|.++-.+..+...      -.
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t   80 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK   80 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence            3455666666 555544443331     0011111  236789999998886666  667766666544111      11


Q ss_pred             EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeee-----e--cccCCCcEEEEECCCCCEEEEEe
Q 016257          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-----K--RLLRKPASVLSISLDGKYLAMGS  263 (392)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-----~--~~~~~~v~~~~~s~~~~~l~~~~  263 (392)
                      .+-...-....++.|.|+|..      ... .|+.|+-++-.+...-.-     .  ..-=..+..+.+.|+|.+.++. 
T Consensus        81 ~IG~~Gw~~F~a~~fD~~G~L------Yav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-  152 (236)
T 1tl2_A           81 KIGNGGWNQFQFLFFDPNGYL------YAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-  152 (236)
T ss_dssp             EEECSCGGGCSEEEECTTSCE------EEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred             EecccccccceEEEECCCCCE------EEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence            111111112478999999983      444 568888887643211100     0  0011357899999999887777 


Q ss_pred             CCCcEEEEecCCcee------eeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257          264 KDGDICVVDVKKMEI------NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       264 ~dg~i~iwd~~~~~~------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                       |+.++-....+...      ...+.... -..-..+.|.+++.+.++.  +|  ++|....+
T Consensus       153 -dg~lyr~~~P~~~~~~wl~~~~~~g~~g-~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~p  209 (236)
T 1tl2_A          153 -GQQFYKALPPVSNQDNWLARATKIGQGG-WDTFKFLFFSSVGTLFGVQ--GG--KFYEDYPP  209 (236)
T ss_dssp             -TTEEEEECCCSSTTCCHHHHCEEEESSS-GGGEEEEEECTTSCEEEEE--TT--EEEEESCC
T ss_pred             -CCcEEecCCCCCCCcccccccceeccCC-cceEEEEEECCCCcEEEEe--CC--eEEecCCc
Confidence             77754333332110      11111111 2244557789998876666  66  56665544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.41  E-value=0.023  Score=49.59  Aligned_cols=145  Identities=10%  Similarity=0.027  Sum_probs=92.8

Q ss_pred             cCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCC---CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee---
Q 016257          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---  236 (392)
Q Consensus       163 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---  236 (392)
                      +.+|..++.+- ++.||.-++......+.+....   -..+..+..+|+|..     ++.. .+..|.|-.+..+..   
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~l-----LAl~-g~~~V~Vv~LP~~~~~~~  101 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDL-----LCLF-NDNEIFVMEVPWGYSNVE  101 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSE-----EEEE-CSSEEEEEECCTTCSCCC
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCE-----EEEe-cCCeEEEEEecCccccCc
Confidence            34555555553 3678888877554455555442   225788999999995     3333 455788888773210   


Q ss_pred             ---------eeeecc------cCCCcEEEEECCC---CCEEEEEeCCCcEEEEecCCce-eeeeee--------ccccCc
Q 016257          237 ---------IGHKRL------LRKPASVLSISLD---GKYLAMGSKDGDICVVDVKKME-INHWSK--------RLHLGT  289 (392)
Q Consensus       237 ---------~~~~~~------~~~~v~~~~~s~~---~~~l~~~~~dg~i~iwd~~~~~-~~~~~~--------~~~~~~  289 (392)
                               .+.+..      ...+|..+.|+|-   +..|++-..|+.|++||+.... .+..+.        ... ..
T Consensus       102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~-~~  180 (452)
T 3pbp_A          102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDAR-VN  180 (452)
T ss_dssp             CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSS-CC
T ss_pred             ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcc-cc
Confidence                     111111      2467999999995   5789999999999999998521 111111        011 26


Q ss_pred             ceEEEEEeeCCCeEEEEe--CCCeEEEE
Q 016257          290 SIALVEFCPTQRVVLTAS--KEWGAMIT  315 (392)
Q Consensus       290 ~i~~~~~s~~~~~l~~~~--~dg~i~iw  315 (392)
                      .|.+++|.+++-.|...+  ..|-|+-.
T Consensus       181 ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          181 DITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             eEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            789999999887776655  77877653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.40  E-value=0.023  Score=49.65  Aligned_cols=116  Identities=16%  Similarity=0.139  Sum_probs=75.7

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccce------------eeccccCCCCCCCCCeEEEEecC---CCCEEE
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI------------NLLAKKMPPLQDAGPQKCLSFSV---DGSRFA  128 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~------------~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~  128 (392)
                      +.|..+..+|+|++||..+.. .|.|-.+..+....            .+..... ......+|..+.|+|   .+..|+
T Consensus        66 ~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~-~~~~~s~I~qVlWHPl~~~ds~LV  143 (452)
T 3pbp_A           66 DDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE-EVGPKSSIKKVLFHPKSYRDSCIV  143 (452)
T ss_dssp             CTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC-C--CCCCEEEEEECTTBGGGCEEE
T ss_pred             CceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCc-ccCCCCceeEEEeccccCCCCeEE
Confidence            368889999999999987555 59999987432111            1111111 111357899999999   456899


Q ss_pred             EEeCCCcEEEEeCCCCc-eeeccc---------CCCCcEEEEEecCCCCeEEEEc--CCCcEEEE
Q 016257          129 AGGVDGHLRIMHWPSLR-IILDEP---------KAHKSVLDMDFSLDSEFLATTS--TDGSARIW  181 (392)
Q Consensus       129 ~~~~dg~i~i~d~~~~~-~~~~~~---------~~~~~i~~i~~~~~~~~l~~~~--~d~~i~vw  181 (392)
                      +-..|+.|++||+.... ....+.         .....|.+++|.+++-.|...+  ++|.|+-.
T Consensus       144 VLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          144 VLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            99999999999997522 111111         1114688999998776666644  66766543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.29  E-value=0.053  Score=45.84  Aligned_cols=217  Identities=12%  Similarity=-0.009  Sum_probs=103.6

Q ss_pred             CCCeEEEEeCC----CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC----C-----CcEEEEe
Q 016257           74 SGDDFVCSTTN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----D-----GHLRIMH  140 (392)
Q Consensus        74 ~~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d-----g~i~i~d  140 (392)
                      ++..++.|+.+    ..+.+||..+.+....  . ..+   ....-.+++. .++..++.|+.    +     ..+.+||
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~--~-~~p---~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d   96 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL--A-DLQ---VPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYN   96 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEEC--C-CCS---SCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeEC--C-CCC---cccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEEC
Confidence            45566666632    3477787766542211  1 111   1111112222 25666666665    2     4688999


Q ss_pred             CCCCceeecc--cCCCCcEEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcce
Q 016257          141 WPSLRIILDE--PKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (392)
Q Consensus       141 ~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (392)
                      ..+.+.....  .........+.+  +++.++.|+.+     ..+.+||+.+.+-...-..+....-.+++.. ++. + 
T Consensus        97 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-i-  171 (308)
T 1zgk_A           97 PMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRL-L-  171 (308)
T ss_dssp             TTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTE-E-
T ss_pred             CCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCE-E-
Confidence            8876543221  111112222222  56667776643     3588999887654322111111111122222 332 1 


Q ss_pred             EEEEEEeCC-----ccEEEEEeCCCceee--eeecccCCCcEEEEECCCCCEEEEEeCC-----CcEEEEecCCceeeee
Q 016257          214 LFCTVQRGD-----KALLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEINHW  281 (392)
Q Consensus       214 ~~~~~~~~~-----d~~i~v~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~  281 (392)
                         .+.++.     ...+.+||+.+.+-.  ..+.........+.+  ++++++.|+.+     ..+.+||+.+.+-...
T Consensus       172 ---yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~  246 (308)
T 1zgk_A          172 ---YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFV  246 (308)
T ss_dssp             ---EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             ---EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence               244443     246889998765422  111111122223333  66777777754     5699999988765433


Q ss_pred             eeccccCcceEEEEEeeCCCeEEEEeCC
Q 016257          282 SKRLHLGTSIALVEFCPTQRVVLTASKE  309 (392)
Q Consensus       282 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d  309 (392)
                      ............+.  -++++++.|+.+
T Consensus       247 ~~~p~~r~~~~~~~--~~~~i~v~GG~~  272 (308)
T 1zgk_A          247 APMKHRRSALGITV--HQGRIYVLGGYD  272 (308)
T ss_dssp             CCCSSCCBSCEEEE--ETTEEEEECCBC
T ss_pred             CCCCCCccceEEEE--ECCEEEEEcCcC
Confidence            21111011222222  267777777754

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.22  E-value=0.052  Score=46.04  Aligned_cols=64  Identities=8%  Similarity=-0.001  Sum_probs=35.9

Q ss_pred             CCCEEEEEeCC--------CcEEEEeCCCCceeecc--cCCCCcEEEEEecCCCCeEEEEcC-C-----CcEEEEECCCC
Q 016257          123 DGSRFAAGGVD--------GHLRIMHWPSLRIILDE--PKAHKSVLDMDFSLDSEFLATTST-D-----GSARIWKTEDG  186 (392)
Q Consensus       123 ~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~-d-----~~i~vwd~~~~  186 (392)
                      ++..++.|+.+        ..+.+||..+.+-....  .........+.  -+++.++.|+. +     ..+.+||+.+.
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence            55566666632        45899999876543221  11111122222  34666777765 2     46889998876


Q ss_pred             ee
Q 016257          187 VA  188 (392)
Q Consensus       187 ~~  188 (392)
                      +-
T Consensus       176 ~W  177 (315)
T 4asc_A          176 EW  177 (315)
T ss_dssp             EE
T ss_pred             eE
Confidence            54

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.20  E-value=0.092  Score=45.43  Aligned_cols=59  Identities=7%  Similarity=-0.050  Sum_probs=35.6

Q ss_pred             ceEEEEecCC-------CCcceEEEEEEeCCccEEEEEeCCCceeeeee---cccCCCcEEEEECCCCCEEEEE
Q 016257          199 KIELCRFSKD-------GTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLAMG  262 (392)
Q Consensus       199 ~v~~~~~~~~-------~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~  262 (392)
                      ....++|...       +..     +++.-..+.|...+++.++.....   ......+..+++.|||.+.++.
T Consensus       272 ap~G~~~y~g~~fp~~~g~l-----~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          272 AVSGMAFYNSDKFPQWQQKL-----FIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT  340 (353)
T ss_dssp             CEEEEEEECCSSSGGGTTEE-----EEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred             CcceeEEECCccCcccCCcE-----EEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence            4566777643       332     345556677887777755433221   1223578899999999865543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.06  E-value=0.24  Score=47.77  Aligned_cols=233  Identities=6%  Similarity=-0.029  Sum_probs=127.1

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~  143 (392)
                      ..|.++.-.++|+. ..|+.. -+..++..+++...-....... ......|.++...++|. |-.|+..+-+.++|.++
T Consensus       373 ~~v~~i~~d~~g~l-Wigt~~-GL~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~  448 (758)
T 3ott_A          373 NRIRHIYEDKEQQL-WIATDG-SINRYDYATRQFIHYNIVDNTG-TYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHK  448 (758)
T ss_dssp             SCEEEEEECTTSCE-EEEETT-EEEEEETTTTEEEEEEEECCC---CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHH
T ss_pred             CceEEEEECCCCCE-EEEeCC-cHhhcCcCCCcEEEeecCCCcC-CCCCceEEEEEEcCCCC-EEEEECCCceEEEcccc
Confidence            35888887777764 444544 4888887665432211101000 00234678888777774 55566666688888542


Q ss_pred             C-----ceee---c---ccC-CCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCC--CcceEEEEecCCC
Q 016257          144 L-----RIIL---D---EPK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS--DEKIELCRFSKDG  209 (392)
Q Consensus       144 ~-----~~~~---~---~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~  209 (392)
                      .     ....   .   ... ....|.++...++|++.+.++..+-+..+|.++++.........  ...+.++....+|
T Consensus       449 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g  528 (758)
T 3ott_A          449 LMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDG  528 (758)
T ss_dssp             HHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTS
T ss_pred             ccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCC
Confidence            1     1111   0   011 12358999999888866643444558889987765443221111  2357788877777


Q ss_pred             CcceEEEEEEeCCccEEEEEeCCCceeeee-e-cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeecccc
Q 016257          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGH-K-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL  287 (392)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  287 (392)
                      .      +..++..| +..||..+.+.... . ......+.++... +| .|..++.+| |..+|.++.+....-.  . 
T Consensus       529 ~------lWigt~~G-l~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g-~lWi~t~~G-l~~~~~~~~~~~~~~~--~-  595 (758)
T 3ott_A          529 L------LWVGFHGG-VMRINPKDESQQSISFGSFSNNEILSMTCV-KN-SIWVSTTNG-LWIIDRKTMDARQQNM--T-  595 (758)
T ss_dssp             C------EEEEETTE-EEEECC--CCCCBCCCCC---CCEEEEEEE-TT-EEEEEESSC-EEEEETTTCCEEEC----C-
T ss_pred             C------EEEEecCc-eEEEecCCCceEEecccCCCccceEEEEEC-CC-CEEEECCCC-eEEEcCCCceeEEecC--C-
Confidence            7      44555544 88888765543211 1 1123457777653 55 566666666 8888988776543211  1 


Q ss_pred             CcceEEEEEe-eCCCeEEEEeCCCeEEE
Q 016257          288 GTSIALVEFC-PTQRVVLTASKEWGAMI  314 (392)
Q Consensus       288 ~~~i~~~~~s-~~~~~l~~~~~dg~i~i  314 (392)
                      ...+....+. ++| .|..|+.+|-+.+
T Consensus       596 ~~~~~~~~~~~~~G-~l~fG~~~Gl~~f  622 (758)
T 3ott_A          596 NKRFTSLLFDPKED-CVYLGGADGFGIS  622 (758)
T ss_dssp             CCCCSEEEEETTTT-EEEEECBSEEEEE
T ss_pred             CCceeeeEEECCCC-cEEEecCCceEEE
Confidence            2233344444 355 5666777765544

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.06  E-value=0.11  Score=43.84  Aligned_cols=189  Identities=13%  Similarity=0.048  Sum_probs=92.1

Q ss_pred             CCCeEEEEeC----C-----CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC-----CcEEEE
Q 016257           74 SGDDFVCSTT----N-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIM  139 (392)
Q Consensus        74 ~~~~l~~~~~----d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~  139 (392)
                      ++..++.|+.    +     ..+.+||..+.+...  .. ..+.  .......+.+  +++.++.|+.+     ..+.+|
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~--~~-~~p~--~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~y  142 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP--CA-PMSV--PRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERY  142 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEE--CC-CCSS--CCBTCEEEEE--TTEEEEECCEETTEECCCEEEE
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeE--CC-CCCc--CccccEEEEE--CCEEEEEcCCCCCcccccEEEE
Confidence            5666677665    2     347777776554211  11 1110  1111222223  56666666543     468899


Q ss_pred             eCCCCceeecc--cCCCCcEEEEEecCCCCeEEEEcCC-----CcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcc
Q 016257          140 HWPSLRIILDE--PKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (392)
Q Consensus       140 d~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (392)
                      |..+.+-....  .........+.+  +++.++.|+.+     ..+.+||+.+.+-...-..+....-.+++.. ++. +
T Consensus       143 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-i  218 (308)
T 1zgk_A          143 EPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNC-I  218 (308)
T ss_dssp             ETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTE-E
T ss_pred             CCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCE-E
Confidence            98876543221  111112222222  56677777654     4588999877654322111111111122222 333 2


Q ss_pred             eEEEEEEeCCc-----cEEEEEeCCCceee--eeecccCCCcEEEEECCCCCEEEEEeCC-----CcEEEEecCCceee
Q 016257          213 FLFCTVQRGDK-----ALLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEIN  279 (392)
Q Consensus       213 ~~~~~~~~~~d-----~~i~v~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~  279 (392)
                          .+.++.+     ..+.+||+.+.+-.  ..+.........+.+  ++++++.|+.+     ..+.+||+.+.+-.
T Consensus       219 ----yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  291 (308)
T 1zgk_A          219 ----YAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTWS  291 (308)
T ss_dssp             ----EEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             ----EEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence                3444432     56899998875432  111111112222332  56777777754     35788888876543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.01  E-value=0.13  Score=43.61  Aligned_cols=212  Identities=10%  Similarity=0.011  Sum_probs=101.9

Q ss_pred             EEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC----C-------CcEEEEeCCCCce
Q 016257           78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----D-------GHLRIMHWPSLRI  146 (392)
Q Consensus        78 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d-------g~i~i~d~~~~~~  146 (392)
                      ++.|+  ..+.+||..+.+-..  .  ..+.  ............++..++.|+.    +       ..+..||..+.+-
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~--~--~~~~--p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W   79 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYC--A--SLSS--QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW   79 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEE--E--ECCC--CSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred             EEEcC--CceEEECCCCCeEec--C--CCCC--CCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence            34444  458888887765322  1  1110  0112222233346777777773    1       1277889887654


Q ss_pred             eecccCCCC--cEEEEEecCCCCeEEEEcCC--------CcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEE
Q 016257          147 ILDEPKAHK--SVLDMDFSLDSEFLATTSTD--------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC  216 (392)
Q Consensus       147 ~~~~~~~~~--~i~~i~~~~~~~~l~~~~~d--------~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (392)
                      .........  ....+.+  +++.++.|+.+        ..+.+||..+.+-...-..+....-.+++. .++. +    
T Consensus        80 ~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~-i----  151 (315)
T 4asc_A           80 LGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDL-V----  151 (315)
T ss_dssp             EECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTE-E----
T ss_pred             EECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCE-E----
Confidence            321111111  1122222  56666666632        458899998765322111111111122222 2333 1    


Q ss_pred             EEEeCC------ccEEEEEeCCCcee--eeeecccCCCcEEEEECCCCCEEEEEeCCC-----cEEEEecCCceeeeeee
Q 016257          217 TVQRGD------KALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDG-----DICVVDVKKMEINHWSK  283 (392)
Q Consensus       217 ~~~~~~------d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~  283 (392)
                      .+.++.      -..+.+||..+.+-  +..+........++.+  ++++++.|+.++     .+.+||+.+.+-.....
T Consensus       152 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~  229 (315)
T 4asc_A          152 YVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA  229 (315)
T ss_dssp             EEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC
T ss_pred             EEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCC
Confidence            344443      24688999886532  2222111112222333  667777877654     48899998876444321


Q ss_pred             ccccCcceEEEEEeeCCCeEEEEeCC
Q 016257          284 RLHLGTSIALVEFCPTQRVVLTASKE  309 (392)
Q Consensus       284 ~~~~~~~i~~~~~s~~~~~l~~~~~d  309 (392)
                      ..........+.  -++++++.|+.+
T Consensus       230 ~p~~r~~~~~~~--~~~~l~v~GG~~  253 (315)
T 4asc_A          230 FPQERSSLSLVS--LVGTLYAIGGFA  253 (315)
T ss_dssp             CSSCCBSCEEEE--ETTEEEEEEEEE
T ss_pred             CCCcccceeEEE--ECCEEEEECCcc
Confidence            111112222222  367778888764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.97  E-value=0.14  Score=43.45  Aligned_cols=148  Identities=16%  Similarity=0.119  Sum_probs=70.5

Q ss_pred             CCCEEEEEeCC-------CcEEEEeCCCCceeecccCCCCcE-EEEEecCCCCeEEEEcC------CCcEEEEECCCCee
Q 016257          123 DGSRFAAGGVD-------GHLRIMHWPSLRIILDEPKAHKSV-LDMDFSLDSEFLATTST------DGSARIWKTEDGVA  188 (392)
Q Consensus       123 ~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~i-~~i~~~~~~~~l~~~~~------d~~i~vwd~~~~~~  188 (392)
                      +++.++.|+.+       ..+.+||..+.+-........... .+++. .+++.++.|+.      -..+.+||+.+.+-
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  187 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW  187 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence            56666777653       347888988765432211111111 11222 35666666663      23589999987754


Q ss_pred             eEEEecCCCcceEEEEecCCCCcceEEEEEEeCC-----ccEEEEEeCCCcee--eeeecccCCCcEEEEECCCCCEEEE
Q 016257          189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-----KALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAM  261 (392)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~  261 (392)
                      ...-.......-.+++.. ++ .++    +.++.     ...+.+||+.+.+-  +..+.........+.  -++++++.
T Consensus       188 ~~~~~~p~~r~~~~~~~~-~~-~iy----v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~  259 (318)
T 2woz_A          188 KDLAPMKTPRSMFGVAIH-KG-KIV----IAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAI  259 (318)
T ss_dssp             EEECCCSSCCBSCEEEEE-TT-EEE----EEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEE
T ss_pred             EECCCCCCCcccceEEEE-CC-EEE----EEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEE
Confidence            332111111111222222 33 322    23322     24678899876532  222211111222222  25667777


Q ss_pred             EeCC--------------CcEEEEecCCceee
Q 016257          262 GSKD--------------GDICVVDVKKMEIN  279 (392)
Q Consensus       262 ~~~d--------------g~i~iwd~~~~~~~  279 (392)
                      |+.+              ..+.+||+.+.+-.
T Consensus       260 GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~  291 (318)
T 2woz_A          260 GGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA  291 (318)
T ss_dssp             CCBCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred             CCeeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence            7653              34667777665543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.96  E-value=0.071  Score=46.12  Aligned_cols=96  Identities=9%  Similarity=0.081  Sum_probs=45.2

Q ss_pred             CCCeEEEEeCC-CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC-C---------CcEEEEeCC
Q 016257           74 SGDDFVCSTTN-GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-D---------GHLRIMHWP  142 (392)
Q Consensus        74 ~~~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d---------g~i~i~d~~  142 (392)
                      ++..++.|+.+ ..+.++|............. .+.. ....-..+.+  +++.++.|+. +         ..+.+||..
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~-~p~~-~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~   94 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAA-FPGG-PRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK   94 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCC-CTTC-CCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCC-CCCC-cCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence            55566666543 45777776532222222111 1100 1111122222  5666666665 2         468999998


Q ss_pred             CCceeecccCC-CC--cEEEEEecCCCCeEEEEcCC
Q 016257          143 SLRIILDEPKA-HK--SVLDMDFSLDSEFLATTSTD  175 (392)
Q Consensus       143 ~~~~~~~~~~~-~~--~i~~i~~~~~~~~l~~~~~d  175 (392)
                      +.+-....... ..  ....+.  .+++.++.|+.+
T Consensus        95 ~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~  128 (357)
T 2uvk_A           95 TNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred             CCcEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence            76643222111 11  222222  457777778754

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.94  E-value=0.14  Score=43.06  Aligned_cols=202  Identities=10%  Similarity=0.075  Sum_probs=110.8

Q ss_pred             EEEcCCCCeEEEEeCCC--------------eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe--C
Q 016257           69 IAVNPSGDDFVCSTTNG--------------GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--V  132 (392)
Q Consensus        69 ~~~sp~~~~l~~~~~d~--------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~  132 (392)
                      --+++++++|+.+....              .|+..++...+  ......        .  .+..|++++++|+-..  .
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~--~~~l~~--------~--~~~~~s~~g~~Iy~~~~~~  125 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG--STVLDP--------D--PCIYASLIGNYIYYLHYDT  125 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCC--CEEEEC--------S--CEEEEEEETTEEEEEEESS
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCc--ceEeec--------C--CccEEEEeCCEEEEEeecC
Confidence            45688999988776532              34444444332  222211        1  2347788899988776  3


Q ss_pred             C--CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcC-CCcEEEEECCCCeeeEEEecCCCcceEEEEecCCC
Q 016257          133 D--GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (392)
Q Consensus       133 d--g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (392)
                      +  ..|+..++..... ..+..+..    ..++++++.|+-.+. ..+|.+-++..+.... +...   ... ..+.|++
T Consensus       126 ~~~~~Iy~~~~dGs~~-~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~-l~~~---~~~-~~~~P~g  195 (302)
T 3s25_A          126 QTATSLYRIRIDGEEK-KKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEAL-FYDC---NCY-KPVVLDD  195 (302)
T ss_dssp             SSCEEEEEEETTSCCC-EEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEE-EECS---CEE-EEEEEET
T ss_pred             CCCceEEEEECCCCCe-EEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEE-EeCC---Ccc-ceeeecC
Confidence            3  4455556553322 22322221    456788888886665 5778888887655443 3222   222 3456888


Q ss_pred             CcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeC--CCcEEEEecCCceeeeeeecccc
Q 016257          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK--DGDICVVDVKKMEINHWSKRLHL  287 (392)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~  287 (392)
                      ..++.   ........|..-++...... .+.  ...+  ..|+|+++.|+.+..  .+.|..-++......... .   
T Consensus       196 ~~iy~---t~~~~~~~I~~~~ldG~~~~-~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~-~---  263 (302)
T 3s25_A          196 TNVYY---MDVNRDNAIVHVNINNPNPV-VLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELA-K---  263 (302)
T ss_dssp             TEEEE---EEGGGTTEEEEECSSSCCCE-ECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEE-E---
T ss_pred             CEEEE---EEcCCCcEEEEEECCCCCeE-EEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCccEEee-C---
Confidence            87431   22222357777787765432 222  2233  347888988876632  356777777654433332 2   


Q ss_pred             CcceEEEEEeeCCCeEEEEe
Q 016257          288 GTSIALVEFCPTQRVVLTAS  307 (392)
Q Consensus       288 ~~~i~~~~~s~~~~~l~~~~  307 (392)
                       ..+.  .+++.+.+|+-..
T Consensus       264 -~~~~--~i~i~~d~Iy~td  280 (302)
T 3s25_A          264 -GEFC--NINVTSQYVYFTD  280 (302)
T ss_dssp             -SCEE--EEEECSSEEEEEE
T ss_pred             -Cccc--eEEEeCCEEEEEE
Confidence             1233  4455666666655

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.92  E-value=0.13  Score=44.20  Aligned_cols=163  Identities=7%  Similarity=0.001  Sum_probs=92.8

Q ss_pred             CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeE--EEe---cCCCcceEEEEecCC---CCcceEEEEEEeCCccE
Q 016257          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT--FLT---RNSDEKIELCRFSKD---GTKPFLFCTVQRGDKAL  225 (392)
Q Consensus       154 ~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~--~~~---~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~d~~  225 (392)
                      -.....|+|.|+|+++++--..|.|++++...++...  .+.   .........++++|+   +..+|+  ..+...++.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv--~yt~~~~~~  108 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYA--YFTSASDNR  108 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEE--EEECSSSEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEE--EEecCCCCE
Confidence            3467899999999877766558999999876554322  111   112335789999996   343332  234345567


Q ss_pred             EEEEeCCCc----------eee-eeec-ccCCCcEEEEECCCCCEEEEEeC-------------CCcEEEEecCCce---
Q 016257          226 LAVYDISTW----------NKI-GHKR-LLRKPASVLSISLDGKYLAMGSK-------------DGDICVVDVKKME---  277 (392)
Q Consensus       226 i~v~d~~~~----------~~~-~~~~-~~~~~v~~~~~s~~~~~l~~~~~-------------dg~i~iwd~~~~~---  277 (392)
                      |.-|.+...          +.+ ..+. ........+.|.|||.+.++.+.             .|+|.-.+....-   
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~  188 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG  188 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence            777766541          111 1111 11234457999999987766442             3556555654320   


Q ss_pred             ----eeeeeeccccCcceEEEEEeeCCCeEEEE-eCCCeEEEEEeecC
Q 016257          278 ----INHWSKRLHLGTSIALVEFCPTQRVVLTA-SKEWGAMITKLTVP  320 (392)
Q Consensus       278 ----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~  320 (392)
                          ....+..+|  .....++|+|+|+++++= +.|+.-.|..+..+
T Consensus       189 nPf~~~~i~a~G~--RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G  234 (347)
T 3das_A          189 NPFPGSPVYSYGH--RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPG  234 (347)
T ss_dssp             CSSTTCCEEEBCC--SBCCEEEECTTCCEEEEECCSSSCEEEEEECTT
T ss_pred             CCCCCCeEEeeCC--CCcceEEECCCCCEEEEecCCCCCceeeEEcCC
Confidence                011222343  346789999988765543 33444555555433

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.90  E-value=0.18  Score=43.60  Aligned_cols=197  Identities=8%  Similarity=-0.007  Sum_probs=105.2

Q ss_pred             CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-eeecc---cCCCCcEEEEEecCC---CCeEEEEcC----C----CcE
Q 016257          114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDE---PKAHKSVLDMDFSLD---SEFLATTST----D----GSA  178 (392)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~---~~~~~~i~~i~~~~~---~~~l~~~~~----d----~~i  178 (392)
                      ....++|.|+|+ |+++..+|.|++++ .+++ .+..+   .........|+++|+   +..|+++..    +    ..|
T Consensus        30 ~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           30 VPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             CEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            468899999997 55556679999987 3444 22211   122346889999997   555554433    2    567


Q ss_pred             EEEECCCC-------eee-EEEecCCCcceEEEEecCCCCcceEEEEEEeC------------CccEEEEEeCCCc----
Q 016257          179 RIWKTEDG-------VAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG------------DKALLAVYDISTW----  234 (392)
Q Consensus       179 ~vwd~~~~-------~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------------~d~~i~v~d~~~~----  234 (392)
                      ..|+....       +.+ ..+..........++|.|+|.. |   +..+.            ..+.|.-++....    
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~L-y---vt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~  183 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGML-Y---ITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD  183 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCE-E---EECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcE-E---EEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence            77776543       111 1122111123467999999963 2   22221            1256666665432    


Q ss_pred             ----eeeeeecccCCCcEEEEECC-CCCEEEEEeCCC---cEEEEecCCcee----------------eeeeeccccCcc
Q 016257          235 ----NKIGHKRLLRKPASVLSISL-DGKYLAMGSKDG---DICVVDVKKMEI----------------NHWSKRLHLGTS  290 (392)
Q Consensus       235 ----~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg---~i~iwd~~~~~~----------------~~~~~~~~~~~~  290 (392)
                          .......++ .....++|+| +|.++++-...+   .|.+..  .+..                .....-.+....
T Consensus       184 npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~a  260 (354)
T 3a9g_A          184 NPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWA  260 (354)
T ss_dssp             SSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCC
T ss_pred             CCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcC
Confidence                000011122 2345799999 566555433222   233332  2210                000000011346


Q ss_pred             eEEEEEe-------eCCCeEEEEeCCCeEEEEEeec
Q 016257          291 IALVEFC-------PTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       291 i~~~~~s-------~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      ...++|.       .+|.++++.-..+.|...++..
T Consensus       261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~  296 (354)
T 3a9g_A          261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD  296 (354)
T ss_dssp             EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred             CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence            7888883       5677777766677777777764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.89  E-value=0.18  Score=51.17  Aligned_cols=236  Identities=10%  Similarity=0.073  Sum_probs=132.7

Q ss_pred             EEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee
Q 016257           68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII  147 (392)
Q Consensus        68 ~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~  147 (392)
                      +.-.+|..+.+|.-. ..+++|+|+++........        ...+|.-=.|-.+. .|+..+ +..|+.|++.....+
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~--------~~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P  138 (1630)
T 1xi4_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--------MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQP  138 (1630)
T ss_pred             hhccCCCcceEEEec-CCeEEEeehHHhhhhcccc--------cCCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCcc
Confidence            344578777776653 6779999998876433322        23456666665444 444433 567999999754333


Q ss_pred             eccc-CC----CCcEEEEEecCCCCeEEEEc-------CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE
Q 016257          148 LDEP-KA----HKSVLDMDFSLDSEFLATTS-------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (392)
Q Consensus       148 ~~~~-~~----~~~i~~i~~~~~~~~l~~~~-------~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (392)
                      .... .|    ...|..-..+++.++++..+       -.|.+.+|..+.+. .+.+.+|.. ....+....+.....++
T Consensus       139 ~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~-~F~~~~~~~~~~~~~l~  216 (1630)
T 1xi4_A          139 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAA-SFAQFKMEGNAEESTLF  216 (1630)
T ss_pred             HHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHh-hhheeccCCCCCCceEE
Confidence            3332 22    13677777889999877543       34788899886442 233333321 22222222111111122


Q ss_pred             EEEEe-CCccEEEEEeCCCc---eeeee------eccc---CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee
Q 016257          216 CTVQR-GDKALLAVYDISTW---NKIGH------KRLL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (392)
Q Consensus       216 ~~~~~-~~d~~i~v~d~~~~---~~~~~------~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  282 (392)
                      |++.- ...+.++|-++...   .+...      +...   ..-..++..|+.-..++.-+.-|.|++||+.++..+..-
T Consensus       217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~  296 (1630)
T 1xi4_A          217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  296 (1630)
T ss_pred             EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence            33322 23468888887542   11100      0010   112235777887778888899999999999999877654


Q ss_pred             eccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          283 KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       283 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      . .. ..+|...+-+....-++.....|.|.--.++
T Consensus       297 r-is-~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~  330 (1630)
T 1xi4_A          297 R-IS-GETIFVTAPHEATAGIIGVNRKGQVLSVCVE  330 (1630)
T ss_pred             c-cc-CCceEEeccCCCCCceEEEcCCceEEEEEEc
Confidence            2 22 4455554444443345555566666555554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.87  E-value=0.011  Score=46.60  Aligned_cols=102  Identities=11%  Similarity=0.055  Sum_probs=62.9

Q ss_pred             ceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCC--------cEEEEECCCCCEEEEEeCCCcEEE
Q 016257          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKP--------ASVLSISLDGKYLAMGSKDGDICV  270 (392)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~--------v~~~~~s~~~~~l~~~~~dg~i~i  270 (392)
                      .+..++|+|++..      ... .++.++-.+..+.....-+. ....        -.++.|.|+|.+.++  .||.|+-
T Consensus        42 ~~~~laf~P~G~L------YaV-~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr  111 (236)
T 1tl2_A           42 NFKFLFLSPGGEL------YGV-LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYK  111 (236)
T ss_dssp             TCSEEEECTTSCE------EEE-ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEE
T ss_pred             cceeEEECCCccE------EEE-eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECCCCCEEEe--CCCEEEE
Confidence            5789999998872      333 66777777765422110000 0111        367899999988877  5698988


Q ss_pred             EecCCceeeeeeeccc-----cCcceEEEEEeeCCCeEEEEeCCCeE
Q 016257          271 VDVKKMEINHWSKRLH-----LGTSIALVEFCPTQRVVLTASKEWGA  312 (392)
Q Consensus       271 wd~~~~~~~~~~~~~~-----~~~~i~~~~~s~~~~~l~~~~~dg~i  312 (392)
                      ++-.+......+..+.     .-..+..|.|.|+|.+.+..  |+.+
T Consensus       112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A          112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             ESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             eCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence            8764422222211110     02578999999999877666  7774

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.87  E-value=0.17  Score=42.86  Aligned_cols=178  Identities=12%  Similarity=0.046  Sum_probs=85.2

Q ss_pred             ecCCCCEEEEEeC----CC-------cEEEEeCCCCceeec--ccCCCCcEEEEEecCCCCeEEEEcCC-------CcEE
Q 016257          120 FSVDGSRFAAGGV----DG-------HLRIMHWPSLRIILD--EPKAHKSVLDMDFSLDSEFLATTSTD-------GSAR  179 (392)
Q Consensus       120 ~s~~~~~l~~~~~----dg-------~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-------~~i~  179 (392)
                      ...++..++.|+.    ++       .+..||..+.+....  +.........+.+  +++.++.|+.+       ..+.
T Consensus        53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~  130 (318)
T 2woz_A           53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL  130 (318)
T ss_dssp             ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred             EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence            3456777777773    12       177888877654322  1111111222222  56677777653       2478


Q ss_pred             EEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCC------ccEEEEEeCCCcee--eeeecccCCCcEEEE
Q 016257          180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD------KALLAVYDISTWNK--IGHKRLLRKPASVLS  251 (392)
Q Consensus       180 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~  251 (392)
                      +||..+.+-...-..+....-.+++. .++. +    .+.++.      ...+.+||..+.+-  +..+.........+.
T Consensus       131 ~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~-i----yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  204 (318)
T 2woz_A          131 CYDPVAAKWSEVKNLPIKVYGHNVIS-HNGM-I----YCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI  204 (318)
T ss_dssp             EEETTTTEEEEECCCSSCEESCEEEE-ETTE-E----EEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred             EEeCCCCCEeECCCCCCcccccEEEE-ECCE-E----EEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE
Confidence            88988765433211111101112222 2333 2    233432      24588999887542  222211111222233


Q ss_pred             ECCCCCEEEEEeCC-----CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCC
Q 016257          252 ISLDGKYLAMGSKD-----GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE  309 (392)
Q Consensus       252 ~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  309 (392)
                      +  ++++++.|+.+     ..+.+||+.+.+-...............+  ..++++++.|+.+
T Consensus       205 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~  263 (318)
T 2woz_A          205 H--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV--SLAGSLYAIGGFA  263 (318)
T ss_dssp             E--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE--EETTEEEEECCBC
T ss_pred             E--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE--EECCEEEEECCee
Confidence            2  56777777653     34778998876644322111101122222  2367777777754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.66  E-value=0.0096  Score=50.88  Aligned_cols=189  Identities=6%  Similarity=-0.018  Sum_probs=103.9

Q ss_pred             CeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEec--CCCCcceEEEEEEe-CCccEEEEEeCCCceeeeeecc-
Q 016257          167 EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS--KDGTKPFLFCTVQR-GDKALLAVYDISTWNKIGHKRL-  242 (392)
Q Consensus       167 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~-~~d~~i~v~d~~~~~~~~~~~~-  242 (392)
                      ..++.++.||.|.-+|.++|+..-++......++....-.  +.+...    ++.. ..||.|..+|..++.....+.. 
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~----~vv~p~~dG~l~a~~~~~G~~~~~~~~~   86 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYET----LIIEPFGDGNIYYFNAHQGLQKLPLSIR   86 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEE----EEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcE----EEEEECCCCEEEEEECCCCcEEeeeccc
Confidence            4688899999999999999999888765411122111100  111120    2333 6899999999888754432221 


Q ss_pred             ---cCCCcEE---EEE-----CCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcc-----eEEEEEe-----eCCC
Q 016257          243 ---LRKPASV---LSI-----SLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS-----IALVEFC-----PTQR  301 (392)
Q Consensus       243 ---~~~~v~~---~~~-----s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----i~~~~~s-----~~~~  301 (392)
                         ...++..   ..+     +..+..+++|+.+|++.-.|+++|+.+..+..+.....     ..+....     ..+.
T Consensus        87 ~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~  166 (339)
T 2be1_A           87 QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN  166 (339)
T ss_dssp             HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred             cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence               1112221   001     01456889999999999999999998887643321111     1111111     1234


Q ss_pred             eEEEEeCCCeEEEEEeecCccccceeeeeeee-eeee-----------eceEEEEeeecceeeeeccccccccc
Q 016257          302 VVLTASKEWGAMITKLTVPADWKEWQIYSLLL-ALFL-----------ASAVVFYIFFENSDSFWNFPVARNQH  363 (392)
Q Consensus       302 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~-----------~~~~~~~~~~d~~i~~W~~~~~~~~~  363 (392)
                      .|+.+..+..+.+.+ +.+   ..|...+... ....           ..+..++++.|+.+.-.|..+|+.+.
T Consensus       167 ~v~ig~~~y~v~~~~-~sG---~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          167 MIVIGKTIFELGIHS-YDG---ASYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEEEEECEECC-TTS---CCCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTCCEEE
T ss_pred             eEEEecceEEEEEEC-CCC---CeEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCCcEEE
Confidence            677777776666655 222   1454322111 0000           11344667778888888877777664

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=96.62  E-value=0.37  Score=43.29  Aligned_cols=111  Identities=12%  Similarity=0.085  Sum_probs=59.9

Q ss_pred             CCeeEEEEcCCCC-eEEEEeCCCeEEEEEEeCCccceeeccc--cCCC---CCCCCCeEEEEecCC---CCEEEEE-eC-
Q 016257           64 GDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAK--KMPP---LQDAGPQKCLSFSVD---GSRFAAG-GV-  132 (392)
Q Consensus        64 ~~v~~~~~sp~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~--~~~~---~~~~~~v~~~~~s~~---~~~l~~~-~~-  132 (392)
                      .....|+|.|+|. .|+++...|.|++++.........+...  ....   .........++|+|+   ..+|++. +. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4678999999996 4556678999998864322111111100  0000   012457889999996   2344333 21 


Q ss_pred             -C----------CcEEEEeCCCC----------ceeeccc--CCCCcEEEEEecCCCCeEEEEcC
Q 016257          133 -D----------GHLRIMHWPSL----------RIILDEP--KAHKSVLDMDFSLDSEFLATTST  174 (392)
Q Consensus       133 -d----------g~i~i~d~~~~----------~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~  174 (392)
                       +          ..|.-|.+..+          +.+....  .....-..|+|.|||.+.++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence             1          13444554321          1222221  11124678999999987776654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.57  E-value=0.29  Score=46.69  Aligned_cols=202  Identities=10%  Similarity=0.053  Sum_probs=102.2

Q ss_pred             CCCCeEEEEeCC----CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC-CCCEEEEEeCC------CcEEEEeC
Q 016257           73 PSGDDFVCSTTN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVD------GHLRIMHW  141 (392)
Q Consensus        73 p~~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d------g~i~i~d~  141 (392)
                      -++..++.|+.+    ..+.+||..+.+..................-.+++..+ +++.++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777643    45888888776532221010000011111112333333 67777777643      35889998


Q ss_pred             CCCceeecccCCCC-cEEEEEecCCCCeEEEEcCCC--cEEEEECCCCeeeEEEe---cC-CCcceEEEEecCCCCcceE
Q 016257          142 PSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTDG--SARIWKTEDGVAWTFLT---RN-SDEKIELCRFSKDGTKPFL  214 (392)
Q Consensus       142 ~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~d~--~i~vwd~~~~~~~~~~~---~~-~~~~v~~~~~~~~~~~~~~  214 (392)
                      .+.+....-..... .-.+++...+++.++.|+.++  .+.+||..+.+-...-.   .+ ......++.+..+...+  
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i--  553 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG--  553 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE--
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE--
Confidence            87654322111111 112223323778888887654  68999998765432211   00 11112335555553332  


Q ss_pred             EEEEEeCC-------ccEEEEEeCCCce--------eeeeec-ccCCCcEEEEECCCCCEEEEEeCC--------CcEEE
Q 016257          215 FCTVQRGD-------KALLAVYDISTWN--------KIGHKR-LLRKPASVLSISLDGKYLAMGSKD--------GDICV  270 (392)
Q Consensus       215 ~~~~~~~~-------d~~i~v~d~~~~~--------~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~i  270 (392)
                        .+.|+.       ...+.+||+.+.+        .+.... ....... +....++++++.|+.+        ..+.+
T Consensus       554 --yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~  630 (695)
T 2zwa_A          554 --IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQ-IKYITPRKLLIVGGTSPSGLFDRTNSIIS  630 (695)
T ss_dssp             --EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCE-EEEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred             --EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccce-EEEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence              234443       2568899988765        111111 1111222 2333336777777743        45999


Q ss_pred             EecCCceee
Q 016257          271 VDVKKMEIN  279 (392)
Q Consensus       271 wd~~~~~~~  279 (392)
                      ||+.+.+-.
T Consensus       631 yd~~t~~W~  639 (695)
T 2zwa_A          631 LDPLSETLT  639 (695)
T ss_dssp             EETTTTEEE
T ss_pred             EECCCCeEE
Confidence            999887654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.41  E-value=0.0079  Score=51.39  Aligned_cols=146  Identities=12%  Similarity=0.087  Sum_probs=83.7

Q ss_pred             CEEEEEeCCCcEEEEeCCCCceeecccCCC-CcEEEEEe--cC-CCCeEEEE-cCCCcEEEEECCCCeeeEEEecCC---
Q 016257          125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDF--SL-DSEFLATT-STDGSARIWKTEDGVAWTFLTRNS---  196 (392)
Q Consensus       125 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~i~~--~~-~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~---  196 (392)
                      ..+++++.||.|.-+|.++|+...++.... .++....-  .+ ++..++.. +.||.+..++..++.....+....   
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            378889999999999999999877665431 22221110  11 22333333 689999999998886554443211   


Q ss_pred             CcceEE---EEe------cCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC--CC-----cEEEEEC-----CC
Q 016257          197 DEKIEL---CRF------SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR--KP-----ASVLSIS-----LD  255 (392)
Q Consensus       197 ~~~v~~---~~~------~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~-----v~~~~~s-----~~  255 (392)
                      ..++..   ...      +.++.      +++++.++.+...|+++|+.+..+....  ..     ..|....     ..
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~------Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~  164 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEK------VYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQEC  164 (339)
T ss_dssp             TCSEEEECC----------CCEE------EEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------
T ss_pred             ccccccCCCceeecccccccCCE------EEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccC
Confidence            011111   001      12333      6889999999999999999887665421  10     1111111     12


Q ss_pred             CCEEEEEeCCCcEEEEecCCce
Q 016257          256 GKYLAMGSKDGDICVVDVKKME  277 (392)
Q Consensus       256 ~~~l~~~~~dg~i~iwd~~~~~  277 (392)
                      +..++.+..+..+.+.+ ++++
T Consensus       165 ~~~v~ig~~~y~v~~~~-~sG~  185 (339)
T 2be1_A          165 ENMIVIGKTIFELGIHS-YDGA  185 (339)
T ss_dssp             CCEEEEEEEEEECEECC-TTSC
T ss_pred             CCeEEEecceEEEEEEC-CCCC
Confidence            45677777777777766 4443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.34  E-value=0.49  Score=41.60  Aligned_cols=225  Identities=12%  Similarity=0.070  Sum_probs=126.4

Q ss_pred             CceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCC
Q 016257           35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGP  114 (392)
Q Consensus        35 ~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  114 (392)
                      ..+++|+++..      .....+.+   .+.|.--.|-.+ +.|+-.+. ..|+-|++.......+..... ..+ ....
T Consensus        86 ~~lQiFnle~K------~klks~~~---~e~VvfWkWis~-~~l~lVT~-taVyHWsi~~~s~P~kvFdR~-~~L-~~~Q  152 (494)
T 1bpo_A           86 KTLQIFNIEMK------SKMKAHTM---TDDVTFWKWISL-NTVALVTD-NAVYHWSMEGESQPVKMFDRH-SSL-AGCQ  152 (494)
T ss_dssp             TEEEEEETTTT------EEEEEEEC---SSCCCEEEEEET-TEEEEECS-SEEEEEESSSSCCCEEEEECC-GGG-TTCE
T ss_pred             CeEEEEchHHh------hhhcceec---CCCceEEEecCC-CeEEEEcC-CeeEEecccCCCCchhheecc-hhc-ccce
Confidence            45778887633      12222222   346777777543 35555444 459999997643333332211 111 1356


Q ss_pred             eEEEEecCCCCEEEEEe-------CCCcEEEEeCCCCceeecccCCCCcEEEEEecCCC---CeEEEEcC---CCcEEEE
Q 016257          115 QKCLSFSVDGSRFAAGG-------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS---EFLATTST---DGSARIW  181 (392)
Q Consensus       115 v~~~~~s~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~---~~l~~~~~---d~~i~vw  181 (392)
                      |..-.-+++.++++..+       -.|.+.+|..+.+.. +.+.+|......+....+.   ..+..+..   .+++.+-
T Consensus       153 IInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~  231 (494)
T 1bpo_A          153 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHII  231 (494)
T ss_dssp             EEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEE
T ss_pred             EEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEE
Confidence            77777888999877543       247789999876543 3345554444444332211   23333433   2678888


Q ss_pred             ECCCC--------eeeEEEecC---CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEE
Q 016257          182 KTEDG--------VAWTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVL  250 (392)
Q Consensus       182 d~~~~--------~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~  250 (392)
                      ++...        +....+..+   ..+-.-++..++....     +..-..-|.|++||+.++.++..-+.....|...
T Consensus       232 Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygv-----iyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t  306 (494)
T 1bpo_A          232 EVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV-----VFLITKYGYIHLYDLETGTCIYMNRISGETIFVT  306 (494)
T ss_dssp             ECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTE-----EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCE-----EEEEecCceEEEEecccceeeeeecccCCceEEe
Confidence            88543        111111111   1222345666665554     3445577899999999999987777666676665


Q ss_pred             EECCCCCEEEEEeCCCcEEEEecCCcee
Q 016257          251 SISLDGKYLAMGSKDGDICVVDVKKMEI  278 (392)
Q Consensus       251 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~  278 (392)
                      +-+....=++.....|.|.--.+.....
T Consensus       307 ~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i  334 (494)
T 1bpo_A          307 APHEATAGIIGVNRKGQVLSVCVEEENI  334 (494)
T ss_dssp             EEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred             cccCCCCcEEEEccCceEEEEEEccccc
Confidence            5555544555555677766666655443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.10  E-value=0.73  Score=41.29  Aligned_cols=164  Identities=12%  Similarity=0.106  Sum_probs=89.2

Q ss_pred             CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeE--EEecC-----CCcceEEEEecCC---CCcceEEEEEEe----
Q 016257          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT--FLTRN-----SDEKIELCRFSKD---GTKPFLFCTVQR----  220 (392)
Q Consensus       155 ~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~--~~~~~-----~~~~v~~~~~~~~---~~~~~~~~~~~~----  220 (392)
                      .....|+|.|+|+++++-...+.|++++..+++...  .+...     .......++|+|+   +..+|+......    
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            356799999999877765444578888765554322  22110     1234678999997   555443221100    


Q ss_pred             CC----ccEEEEEeCCCc-------eeee-eec-ccCCCcEEEEECCCCCEEEEEeCC----------------------
Q 016257          221 GD----KALLAVYDISTW-------NKIG-HKR-LLRKPASVLSISLDGKYLAMGSKD----------------------  265 (392)
Q Consensus       221 ~~----d~~i~v~d~~~~-------~~~~-~~~-~~~~~v~~~~~s~~~~~l~~~~~d----------------------  265 (392)
                      ..    ...|.-++....       +.+. .+. ........++|.|||++.++.+..                      
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~  186 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQE  186 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHH
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCcccccccccccccccccc
Confidence            00    245666655321       1111 111 112457889999999876664421                      


Q ss_pred             ----------CcEEEEecCCce----------eeeeeeccccCcceEEEEEeeCCCeEEEE-eCCCeEEEEEeecC
Q 016257          266 ----------GDICVVDVKKME----------INHWSKRLHLGTSIALVEFCPTQRVVLTA-SKEWGAMITKLTVP  320 (392)
Q Consensus       266 ----------g~i~iwd~~~~~----------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~  320 (392)
                                |+|.-++....-          ....+..+|  .....++|+|+|+++++- +.++.-.|..+..+
T Consensus       187 ~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~--RNp~gla~dp~G~L~~~d~g~~~~dein~i~~G  260 (454)
T 1cru_A          187 LNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH--RNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKG  260 (454)
T ss_dssp             HHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC--SEEEEEEECTTSCEEEEEECSSSCEEEEECCTT
T ss_pred             ccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECC--CCcceEEECCCCCEEEEecCCCCCeEEEEecCC
Confidence                      334444443220          122222343  457889999988755543 34555666666543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.96  E-value=0.69  Score=39.80  Aligned_cols=64  Identities=5%  Similarity=0.026  Sum_probs=34.5

Q ss_pred             CCCEEEEEeC-CCcEEEEeCCC--Ccee--eccc-CCCCcEEEEEecCCCCeEEEEcC-C---------CcEEEEECCCC
Q 016257          123 DGSRFAAGGV-DGHLRIMHWPS--LRII--LDEP-KAHKSVLDMDFSLDSEFLATTST-D---------GSARIWKTEDG  186 (392)
Q Consensus       123 ~~~~l~~~~~-dg~i~i~d~~~--~~~~--~~~~-~~~~~i~~i~~~~~~~~l~~~~~-d---------~~i~vwd~~~~  186 (392)
                      ++..++.|+. ...+.+||+.+  .+..  ..+. ........+.+  ++++++.|+. +         ..+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            5656666654 35688999864  3322  1112 11112222222  4666777765 2         46889999876


Q ss_pred             ee
Q 016257          187 VA  188 (392)
Q Consensus       187 ~~  188 (392)
                      +-
T Consensus        97 ~W   98 (357)
T 2uvk_A           97 SW   98 (357)
T ss_dssp             EE
T ss_pred             cE
Confidence            54

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.64  E-value=1.3  Score=40.39  Aligned_cols=224  Identities=13%  Similarity=0.129  Sum_probs=123.2

Q ss_pred             EEEEeCCCcEEEEeCCCCceeecccCC-------------------------CC--cEEEEEec---CCCCeEEEEc-CC
Q 016257          127 FAAGGVDGHLRIMHWPSLRIILDEPKA-------------------------HK--SVLDMDFS---LDSEFLATTS-TD  175 (392)
Q Consensus       127 l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------------------~~--~i~~i~~~---~~~~~l~~~~-~d  175 (392)
                      |.+|+..|.++|+-+.+++.+..+.-.                         .+  .-..+++.   .||++|+.-. .+
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan  152 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN  152 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence            677888999999998887765443100                         00  01123332   2678877766 45


Q ss_pred             CcEEEEECCCCeeeEEEecCCCcceEEEEec--CCCCcceEEEEEEeCC-------ccE------------EEEEeCCCc
Q 016257          176 GSARIWKTEDGVAWTFLTRNSDEKIELCRFS--KDGTKPFLFCTVQRGD-------KAL------------LAVYDISTW  234 (392)
Q Consensus       176 ~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~-------d~~------------i~v~d~~~~  234 (392)
                      ..|...+++..++.+.+..+....+..++|-  |+..+     ++.+++       ||.            ....|..+.
T Consensus       153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~y-----v~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm  227 (638)
T 3sbq_A          153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKY-----VFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETM  227 (638)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCE-----EEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTC
T ss_pred             cceEEEECCcEeeceeEeCCCCcCcccccccccCCccE-----EEecceeeccCCCCCcccccCChhhceEEEEEcCCcc
Confidence            6788889999888887777666678888886  45554     232222       111            111222222


Q ss_pred             eeeeeecccCCCcEEEEECCCCCEEEEEeCCC---------------cEEEEec-------------------------C
Q 016257          235 NKIGHKRLLRKPASVLSISLDGKYLAMGSKDG---------------DICVVDV-------------------------K  274 (392)
Q Consensus       235 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---------------~i~iwd~-------------------------~  274 (392)
                      +...+... .+........++|++.++.+.+.               .+.++|+                         +
T Consensus       228 ~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~  306 (638)
T 3sbq_A          228 EMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGR  306 (638)
T ss_dssp             SEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECS
T ss_pred             EEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccc
Confidence            22111111 22333456677888877766431               2444444                         2


Q ss_pred             C----ce-eeeeeeccccCcceEEEEEeeCCCeEEEEe-CCCeEEEEEeecCcc--------cc---ce--eeeeeeeee
Q 016257          275 K----ME-INHWSKRLHLGTSIALVEFCPTQRVVLTAS-KEWGAMITKLTVPAD--------WK---EW--QIYSLLLAL  335 (392)
Q Consensus       275 ~----~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~--------~~---~~--~~~~~~~~~  335 (392)
                      .    +. ....+..   ......+..+|||++++.++ .+.++.++++..-..        ..   .-  .+-.-+...
T Consensus       307 ~~~~~~~~~~~~iP~---pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt  383 (638)
T 3sbq_A          307 KKDGKDSKFTRYVPV---PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHT  383 (638)
T ss_dssp             CBTTBCCSSEEEEEE---SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEE
T ss_pred             cccccCCceEEEEeC---CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEE
Confidence            2    11 1111111   23456788999999887766 478999999984211        00   00  111122222


Q ss_pred             eee-ceEE-EEeeecceeeeeccccc
Q 016257          336 FLA-SAVV-FYIFFENSDSFWNFPVA  359 (392)
Q Consensus       336 ~~~-~~~~-~~~~~d~~i~~W~~~~~  359 (392)
                      ... .+.. .+.+.|..|--|++...
T Consensus       384 ~Fd~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          384 TFDGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             EECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             EECCCCceEeeeeecceEEEEeccHH
Confidence            222 2222 23347999999999865

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.46  E-value=1.4  Score=42.00  Aligned_cols=192  Identities=7%  Similarity=0.035  Sum_probs=97.6

Q ss_pred             CCCCEEEEEeCC----CcEEEEeCCCCceeecc-c------CCCCcEEEEEecC-CCCeEEEEcCC------CcEEEEEC
Q 016257          122 VDGSRFAAGGVD----GHLRIMHWPSLRIILDE-P------KAHKSVLDMDFSL-DSEFLATTSTD------GSARIWKT  183 (392)
Q Consensus       122 ~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~-~------~~~~~i~~i~~~~-~~~~l~~~~~d------~~i~vwd~  183 (392)
                      .++..++.|+.+    ..+.+||..+++..... .      .....-.+++..+ +++.++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777643    46889998877543222 1      1111112333333 67777777754      35789998


Q ss_pred             CCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCcc--EEEEEeCCCceeeee-----ecccCCCcEEEEECCC-
Q 016257          184 EDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDISTWNKIGH-----KRLLRKPASVLSISLD-  255 (392)
Q Consensus       184 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~--~i~v~d~~~~~~~~~-----~~~~~~~v~~~~~s~~-  255 (392)
                      .+.+-...-..+....-.+++...++..     .+.|+.++  .+.+||..+.+-...     .........++.+..+ 
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~i-----yv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~  550 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNV-----LILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS  550 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCE-----EEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEE-----EEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence            8764332211111111122333234442     34444332  689999887542211     1111222334555555 


Q ss_pred             CCEEEEEeC--C-----CcEEEEecCCce------eeeeee-ccccCcceEEEEEeeCCCeEEEEeCC--------CeEE
Q 016257          256 GKYLAMGSK--D-----GDICVVDVKKME------INHWSK-RLHLGTSIALVEFCPTQRVVLTASKE--------WGAM  313 (392)
Q Consensus       256 ~~~l~~~~~--d-----g~i~iwd~~~~~------~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~d--------g~i~  313 (392)
                      +++++.|+.  +     +.+.+||+.+.+      ...... ......... +....++++++.|+.+        ..+.
T Consensus       551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~  629 (695)
T 2zwa_A          551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQ-IKYITPRKLLIVGGTSPSGLFDRTNSII  629 (695)
T ss_dssp             TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCE-EEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred             CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccce-EEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence            667777765  2     358899998876      222111 011012222 2333347788888743        4577


Q ss_pred             EEEeec
Q 016257          314 ITKLTV  319 (392)
Q Consensus       314 iw~~~~  319 (392)
                      +||+..
T Consensus       630 ~yd~~t  635 (695)
T 2zwa_A          630 SLDPLS  635 (695)
T ss_dssp             EEETTT
T ss_pred             EEECCC
Confidence            777653

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.52  E-value=2.7  Score=38.27  Aligned_cols=240  Identities=12%  Similarity=0.097  Sum_probs=126.8

Q ss_pred             EEEEeCCCeEEEEEEeCCccceeeccccCCCCC------------------CCCCe--EEEEecC---CCCEEEEEe-CC
Q 016257           78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ------------------DAGPQ--KCLSFSV---DGSRFAAGG-VD  133 (392)
Q Consensus        78 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~------------------~~~~v--~~~~~s~---~~~~l~~~~-~d  133 (392)
                      +.+|+..|.|+|+-+.+.+....+.........                  ..+..  ..+++..   ||++|+.-. .+
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan  152 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN  152 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence            668889999999999888764443221110000                  01111  2334432   677787765 35


Q ss_pred             CcEEEEeCCCCceeeccc-CCCCcEEEEEec--CCCCeEEEEcC-------CCcEE------------EEECCCCeeeEE
Q 016257          134 GHLRIMHWPSLRIILDEP-KAHKSVLDMDFS--LDSEFLATTST-------DGSAR------------IWKTEDGVAWTF  191 (392)
Q Consensus       134 g~i~i~d~~~~~~~~~~~-~~~~~i~~i~~~--~~~~~l~~~~~-------d~~i~------------vwd~~~~~~~~~  191 (392)
                      ..|...+++..++-..+. .....+..+.|-  |+..+++.+++       ||...            ..|..+.+...+
T Consensus       153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q  232 (638)
T 3sbq_A          153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ  232 (638)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred             cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence            667777887766533222 223468888886  67788887764       23210            112222222111


Q ss_pred             EecCCCcceEEEEecCCCCcceEEEE----------EEeCCccEEEEEeC-------------------------CC---
Q 016257          192 LTRNSDEKIELCRFSKDGTKPFLFCT----------VQRGDKALLAVYDI-------------------------ST---  233 (392)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~~~~~~~----------~~~~~d~~i~v~d~-------------------------~~---  233 (392)
                      +...  .....+...+++.+.+..+.          .+.++...+.+++.                         +.   
T Consensus       233 v~v~--gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~  310 (638)
T 3sbq_A          233 VIVD--GNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG  310 (638)
T ss_dssp             EEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred             EEcC--CChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence            1111  12223444555554211000          11112233444443                         32   


Q ss_pred             -ceeeeeecccCCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCcee-----e----ee-eeccccCcceEEEEEeeCCC
Q 016257          234 -WNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEI-----N----HW-SKRLHLGTSIALVEFCPTQR  301 (392)
Q Consensus       234 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~-----~----~~-~~~~~~~~~i~~~~~s~~~~  301 (392)
                       +..+..+.........+..+|||+++++++ -+.++.++|+++...     +    .. .............+|.++|.
T Consensus       311 ~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~  390 (638)
T 3sbq_A          311 KDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGN  390 (638)
T ss_dssp             BCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSE
T ss_pred             cCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCc
Confidence             111111111123344688999999988776 478899999985221     0    00 00111255778899999996


Q ss_pred             eEEEEeCCCeEEEEEeec
Q 016257          302 VVLTASKEWGAMITKLTV  319 (392)
Q Consensus       302 ~l~~~~~dg~i~iw~~~~  319 (392)
                      ...+--.|..|.-|++..
T Consensus       391 aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          391 AYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             EEEEETTTTEEEEEEHHH
T ss_pred             eEeeeeecceEEEEeccH
Confidence            556666899999999974

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=93.41  E-value=2.9  Score=34.62  Aligned_cols=226  Identities=8%  Similarity=-0.052  Sum_probs=115.2

Q ss_pred             CeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 016257           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL  144 (392)
Q Consensus        65 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~  144 (392)
                      .|..++....- .++. . ||.|+.|-...........       .....|..++...+- .++. . ||.|+.|-....
T Consensus        25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~-------~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~   91 (282)
T 3qhy_B           25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPA-------ATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNED   91 (282)
T ss_dssp             SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCG-------GGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTT
T ss_pred             CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCc-------cCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCC
Confidence            56667664332 2333 4 8989998765433221100       112356677665433 3333 4 899999976533


Q ss_pred             ceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCcc
Q 016257          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (392)
Q Consensus       145 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~  224 (392)
                      ..+-.-......|..++...+.  .+.-. ||.|+.|-....-.+.. .......|..++......      ++..  ++
T Consensus        92 Gqlg~P~~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~-~~~~~~~i~~i~~G~~~~------~~l~--~G  159 (282)
T 3qhy_B           92 GQTTVPAEARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTV-PAEAQSGVTALDGGVYTA------LAVK--NG  159 (282)
T ss_dssp             STTCCCGGGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSSEE------EEEE--TT
T ss_pred             CCCCCCcccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCC-CccCCCCeEEEEcccCEE------EEEE--CC
Confidence            2211111112367777766443  33334 89999997654222111 111122465555443322      2222  68


Q ss_pred             EEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEE
Q 016257          225 LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL  304 (392)
Q Consensus       225 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  304 (392)
                      .++.|-......+.........|..++...+ ..++.  .||.|+.|-....-.+-.. ... ...|..++-..+  +.+
T Consensus       160 ~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n~~gqlg~p-~~~-~~~v~~i~~G~~--h~~  232 (282)
T 3qhy_B          160 GVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDNRYKQTTVP-TEA-LSGVSAIASGEW--YSL  232 (282)
T ss_dssp             EEEEEECCTTSTTSCCGGGGSSEEEEEECSS-EEEEE--ETTEEEEEECCTTSTTCCC-GGG-GSSCCEEEECSS--CEE
T ss_pred             EEEEecCCCCCCCCCceecCCCeEEEEecCC-EEEEE--ECCeEEEEECCCCCCCCCC-ccc-CCCceEEEcCCC--EEE
Confidence            8999976643322222222356777766543 23333  5899999965442211111 111 345777765443  333


Q ss_pred             EEeCCCeEEEEEeecCccc
Q 016257          305 TASKEWGAMITKLTVPADW  323 (392)
Q Consensus       305 ~~~~dg~i~iw~~~~~~~~  323 (392)
                      .-. ||.+..|-.+.....
T Consensus       233 al~-~g~v~~wG~n~~gq~  250 (282)
T 3qhy_B          233 ALK-NGKVIAWGSSRTAPS  250 (282)
T ss_dssp             EEE-TTEEEEESTTCCCCG
T ss_pred             EEE-CCEEEEecCCCCccc
Confidence            333 999999977654443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.06  E-value=2.5  Score=43.27  Aligned_cols=172  Identities=9%  Similarity=0.039  Sum_probs=97.8

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEc--C-CCCeEEEE
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN--P-SGDDFVCS   81 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s--p-~~~~l~~~   81 (392)
                      ..|..-.-+++.+.+.+++.+...  ....|.+++|+.+..-         .+.+.||.+....+...  + ....++.+
T Consensus       151 ~QIinY~~d~~~kW~~l~gi~~~~--~~v~G~mQLyS~er~~---------sQ~iegha~~F~~~~~~~~~~~~~l~~f~  219 (1630)
T 1xi4_A          151 CQIINYRTDAKQKWLLLTGISAQQ--NRVVGAMQLYSVDRKV---------SQPIEGHAASFAQFKMEGNAEESTLFCFA  219 (1630)
T ss_pred             CeeEEeeeCCCCCeEEEEeeccCC--Ccccceeeeeeccccc---------chhhhHhHhhhheeccCCCCCCceEEEEE
Confidence            455555666776664444443333  3578999999987443         23356666655444442  1 12233333


Q ss_pred             eC---CCeEEEEEEeCC-ccceeeccc----cCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCC
Q 016257           82 TT---NGGCKLFEVYGG-ATDINLLAK----KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (392)
Q Consensus        82 ~~---d~~i~iw~~~~~-~~~~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  153 (392)
                      .+   .+.++|-++... .....+..+    ..++-.......++..|+.-..++..+.-|.+.+||++++.++..-.-.
T Consensus       220 ~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris  299 (1630)
T 1xi4_A          220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS  299 (1630)
T ss_pred             EecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcccc
Confidence            32   267888888553 111111110    1111112344567777887668888888999999999999987655544


Q ss_pred             CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCe
Q 016257          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV  187 (392)
Q Consensus       154 ~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~  187 (392)
                      ...|...+-+....-++.....|.|.-..+....
T Consensus       300 ~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~  333 (1630)
T 1xi4_A          300 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (1630)
T ss_pred             CCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence            4556555544433335555566766655555443

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=92.67  E-value=3.7  Score=33.92  Aligned_cols=225  Identities=7%  Similarity=-0.089  Sum_probs=111.2

Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEE
Q 016257          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL  192 (392)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  192 (392)
                      ..|..++....- .++. . ||.|+.|-......+.........|..++...... ++. . ||.++.|-....-.+.. 
T Consensus        24 ~~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~-   96 (282)
T 3qhy_B           24 SGVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTV-   96 (282)
T ss_dssp             SSCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCC-
T ss_pred             CCCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCC-
Confidence            356777665432 2333 5 89999997654322211111223577776654332 333 4 89999997654222111 


Q ss_pred             ecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEe
Q 016257          193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (392)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  272 (392)
                      .......|..++......      ++..  ++.|+.|-......+.........|..++...+  +.+.-. ||.|+.|-
T Consensus        97 P~~~~~~v~~ia~G~~hs------~al~--~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG  165 (282)
T 3qhy_B           97 PAEARSGVDAIAAGAWAS------YALK--DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWG  165 (282)
T ss_dssp             CGGGSSSEEEEEEETTEE------EEEE--TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEE
T ss_pred             CcccCCCeEEEECcCCEE------EEEe--CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEec
Confidence            111122466666654433      2333  889999976543322222222345766665433  333334 78999996


Q ss_pred             cCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccce-eeeeeeeeeee-eceEEEEeeecce
Q 016257          273 VKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEW-QIYSLLLALFL-ASAVVFYIFFENS  350 (392)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~d~~  350 (392)
                      ......+... ... ...|..++...+. .++.  .||.+..|-.+....+..- .....+..... ....++. . |+.
T Consensus       166 ~n~~gqlg~p-~~~-~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al-~-~g~  238 (282)
T 3qhy_B          166 DNYFGQTTVP-AEA-QSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLAL-K-NGK  238 (282)
T ss_dssp             CCTTSTTSCC-GGG-GSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEE-E-TTE
T ss_pred             CCCCCCCCCc-eec-CCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEE-E-CCE
Confidence            5542211111 111 3567777765432 2333  5899999977644332110 00000111111 1223333 3 899


Q ss_pred             eeeecccccccc
Q 016257          351 DSFWNFPVARNQ  362 (392)
Q Consensus       351 i~~W~~~~~~~~  362 (392)
                      ++.|=.....++
T Consensus       239 v~~wG~n~~gq~  250 (282)
T 3qhy_B          239 VIAWGSSRTAPS  250 (282)
T ss_dssp             EEEESTTCCCCG
T ss_pred             EEEecCCCCccc
Confidence            999976654333

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=90.00  E-value=10  Score=33.92  Aligned_cols=19  Identities=11%  Similarity=-0.062  Sum_probs=15.4

Q ss_pred             CCcEEEEECCCCCEEEEEe
Q 016257          245 KPASVLSISLDGKYLAMGS  263 (392)
Q Consensus       245 ~~v~~~~~s~~~~~l~~~~  263 (392)
                      ..+..+...|||.++++..
T Consensus       336 ~r~~~v~~~pdG~Lyv~~~  354 (463)
T 2wg3_C          336 GHILGFGEDELGEVYILSS  354 (463)
T ss_dssp             SEEEEEEECTTCCEEEEEE
T ss_pred             CcceEEEECCCCCEEEEec
Confidence            4688999999998877765

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=89.99  E-value=14  Score=35.28  Aligned_cols=198  Identities=11%  Similarity=0.029  Sum_probs=103.4

Q ss_pred             EEEE-ecCCCCEEEEE-eCC----CcEEEEeCCCCceeecccCCC--C------cEEEEEecCCCCeEEEE---------
Q 016257          116 KCLS-FSVDGSRFAAG-GVD----GHLRIMHWPSLRIILDEPKAH--K------SVLDMDFSLDSEFLATT---------  172 (392)
Q Consensus       116 ~~~~-~s~~~~~l~~~-~~d----g~i~i~d~~~~~~~~~~~~~~--~------~i~~i~~~~~~~~l~~~---------  172 (392)
                      ..+. ++|++++++.+ +..    ..++++|+++++.+..-....  .      ....++|..+...+++.         
T Consensus       132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~  211 (711)
T 4hvt_A          132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITS  211 (711)
T ss_dssp             EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCT
T ss_pred             eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCc
Confidence            4455 88999887654 222    469999999987764322210  1      11344776433333331         


Q ss_pred             -cCCCcEEEEECCCCe--eeEEEecCCCcceEEEEecCCCCcc--eEEEEEE-eCCccEEEEEeCCC--ceeeeeecccC
Q 016257          173 -STDGSARIWKTEDGV--AWTFLTRNSDEKIELCRFSKDGTKP--FLFCTVQ-RGDKALLAVYDIST--WNKIGHKRLLR  244 (392)
Q Consensus       173 -~~d~~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~-~~~d~~i~v~d~~~--~~~~~~~~~~~  244 (392)
                       +...+|+.|.+-+..  -...+.......-.....++++...  ++++... +.....+.+.|...  ++.. .+....
T Consensus       212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~  290 (711)
T 4hvt_A          212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ-KINMPS  290 (711)
T ss_dssp             TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE-ECCSCT
T ss_pred             CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce-EeecCC
Confidence             122468888876542  2223333333223345567777753  2221112 23346677777653  3322 222212


Q ss_pred             CCcEEEEECCCCCEEEEE----------eCCCcEEEEecCCce-------eeee-eeccccCcceEEEEEeeCCCeEEEE
Q 016257          245 KPASVLSISLDGKYLAMG----------SKDGDICVVDVKKME-------INHW-SKRLHLGTSIALVEFCPTQRVVLTA  306 (392)
Q Consensus       245 ~~v~~~~~s~~~~~l~~~----------~~dg~i~iwd~~~~~-------~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~  306 (392)
                      . . .+..+.++.+++..          ...+.|...|+.++.       .... +.... ...+..+.|..+ .++++.
T Consensus       291 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~-~l~~~~  366 (711)
T 4hvt_A          291 D-A-TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA-NEVFNFISTTKD-RVFLAT  366 (711)
T ss_dssp             T-C-EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT-TEEEEEEEECSS-CEEEEE
T ss_pred             c-c-eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC-CCeEEEEEEECC-EEEEEE
Confidence            1 1 23334556555532          246779999987642       1111 22222 567888998865 577777


Q ss_pred             eCCCeEE--EEEee
Q 016257          307 SKEWGAM--ITKLT  318 (392)
Q Consensus       307 ~~dg~i~--iw~~~  318 (392)
                      ..++.-+  ++++.
T Consensus       367 ~~~~~~~l~~~~~~  380 (711)
T 4hvt_A          367 YDNVVAKVVTFTLE  380 (711)
T ss_dssp             EETTEEEEEEECEE
T ss_pred             EECCEEEEEEEECC
Confidence            7777544  45544

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=89.60  E-value=9.6  Score=33.00  Aligned_cols=168  Identities=5%  Similarity=-0.061  Sum_probs=86.7

Q ss_pred             cEEEEeCCCC--ceeecccC------CCCcEEEEEec---CC----CCeEEEEc-CCCcEEEEECCCCeeeEEEec---C
Q 016257          135 HLRIMHWPSL--RIILDEPK------AHKSVLDMDFS---LD----SEFLATTS-TDGSARIWKTEDGVAWTFLTR---N  195 (392)
Q Consensus       135 ~i~i~d~~~~--~~~~~~~~------~~~~i~~i~~~---~~----~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~---~  195 (392)
                      +|.+||+.++  +.+.++.-      ....+..+.+.   |+    +.+++.+. ....|.|+|+.+++..+.+..   .
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            4677788777  66544322      22357888887   22    23433333 457799999998877665421   0


Q ss_pred             C--------------CcceEEEEecCC----CCcceEEEEEEeCCccEEEEEe---CCCc---eeeeeeccc--CCCcEE
Q 016257          196 S--------------DEKIELCRFSKD----GTKPFLFCTVQRGDKALLAVYD---ISTW---NKIGHKRLL--RKPASV  249 (392)
Q Consensus       196 ~--------------~~~v~~~~~~~~----~~~~~~~~~~~~~~d~~i~v~d---~~~~---~~~~~~~~~--~~~v~~  249 (392)
                      .              ...+..++++|+    ++.+|+  -..++  ..++--.   ++..   ..++.+...  ......
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf--~plss--~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~  279 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYY--LAGSA--IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIA  279 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEE--EESSC--SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEE--EECCC--CcEEEEEHHHhhCcchhhceEEeeecCCCCCcce
Confidence            0              124677888887    554332  11111  1122111   1111   111111111  123345


Q ss_pred             EEEC-CCCCEEEEEeCCCcEEEEecCC-c---eeeeeeeccccCcceEEEEEeeCCCeEEEE
Q 016257          250 LSIS-LDGKYLAMGSKDGDICVVDVKK-M---EINHWSKRLHLGTSIALVEFCPTQRVVLTA  306 (392)
Q Consensus       250 ~~~s-~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  306 (392)
                      +++. .+|.++++--..+.|..|+..+ .   +....+.....-..+..+++.++|.+.+..
T Consensus       280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          280 LAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS  341 (381)
T ss_dssp             EEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred             EEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence            6775 5677777777788899999876 1   111111111113456677776666544444

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=86.97  E-value=14  Score=31.93  Aligned_cols=243  Identities=10%  Similarity=-0.021  Sum_probs=108.6

Q ss_pred             CCCeeEEEEcC-CCCeEEEEeCCC--eEEEEEEeCCccceeecccc--CCCCC------CCCCeEEEEecC-C-CCEEEE
Q 016257           63 EGDPMTIAVNP-SGDDFVCSTTNG--GCKLFEVYGGATDINLLAKK--MPPLQ------DAGPQKCLSFSV-D-GSRFAA  129 (392)
Q Consensus        63 ~~~v~~~~~sp-~~~~l~~~~~d~--~i~iw~~~~~~~~~~~~~~~--~~~~~------~~~~v~~~~~s~-~-~~~l~~  129 (392)
                      ...|.+|++.| +...|.++...+  .-.||....+..........  .....      ....|.++++.| + ...|.+
T Consensus        54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~  133 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA  133 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred             CCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence            45799999998 333444444444  11344444333222222111  00000      112577889987 2 456666


Q ss_pred             EeCCCcEEEEeCCCCc---eeeccc----------------CCCCcEEEEEecCC-CCeEEEEcCCCcEEEEECCCCeee
Q 016257          130 GGVDGHLRIMHWPSLR---IILDEP----------------KAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAW  189 (392)
Q Consensus       130 ~~~dg~i~i~d~~~~~---~~~~~~----------------~~~~~i~~i~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~  189 (392)
                      +...+.|...+ ..++   .+....                .....+.+|.++|. ...|+.+..++.|...+ ..++..
T Consensus       134 g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW  211 (394)
T 3b7f_A          134 GTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDW  211 (394)
T ss_dssp             EEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSC
T ss_pred             EecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCc
Confidence            66566555443 2222   111110                01235789999883 44455554444444332 223332


Q ss_pred             EEEecCC------------CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc--cC---CCcEEEEE
Q 016257          190 TFLTRNS------------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL--LR---KPASVLSI  252 (392)
Q Consensus       190 ~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~--~~---~~v~~~~~  252 (392)
                      ..+....            ...+.+++++|.....    +..+...+ |...+-. ++.-..+..  ..   ..+..+++
T Consensus       212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~----l~vg~~~g-l~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~  285 (394)
T 3b7f_A          212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDI----LYQQNHCG-IYRMDRR-EGVWKRIGDAMPREVGDIGFPIVV  285 (394)
T ss_dssp             EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTE----EEEEETTE-EEEEETT-TTEEECGGGGSCTTTCSCEEEEEE
T ss_pred             eECCCCccccccCCCccccCcceeEEEECCCCCCE----EEEEcCCe-EEEeCCC-CCcceECCCCCCCCCccceEEEEE
Confidence            2222110            1247889999874321    33333333 4444322 222111111  11   23567888


Q ss_pred             CCC-CCEEEEEeC-----------CCcEEEEecCC-ceeeeeeeccccCc------ceEEEEEeeCC-CeEEEEeCCCeE
Q 016257          253 SLD-GKYLAMGSK-----------DGDICVVDVKK-MEINHWSKRLHLGT------SIALVEFCPTQ-RVVLTASKEWGA  312 (392)
Q Consensus       253 s~~-~~~l~~~~~-----------dg~i~iwd~~~-~~~~~~~~~~~~~~------~i~~~~~s~~~-~~l~~~~~dg~i  312 (392)
                      +|. ...|+++..           ++...+|.... ++.-..+..+-...      ....++++|.. ..|+.++.++.|
T Consensus       286 ~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l  365 (394)
T 3b7f_A          286 HQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI  365 (394)
T ss_dssp             CSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred             CCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence            763 344444432           33345565443 23222221111010      12357787753 456666656554


Q ss_pred             E
Q 016257          313 M  313 (392)
Q Consensus       313 ~  313 (392)
                      .
T Consensus       366 ~  366 (394)
T 3b7f_A          366 W  366 (394)
T ss_dssp             E
T ss_pred             E
Confidence            4

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.33  E-value=31  Score=34.19  Aligned_cols=38  Identities=13%  Similarity=0.131  Sum_probs=33.3

Q ss_pred             cEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe
Q 016257          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT  193 (392)
Q Consensus       156 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  193 (392)
                      .+.++...++..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46777888888899999999999999999999888764

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=84.16  E-value=20  Score=31.07  Aligned_cols=186  Identities=9%  Similarity=-0.007  Sum_probs=94.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCc-----------eeecccC-CCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCC-----
Q 016257          124 GSRFAAGGVDGHLRIMHWPSLR-----------IILDEPK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-----  186 (392)
Q Consensus       124 ~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~-----  186 (392)
                      ....+.-..||.|+.|-.....           ....+.. ....+..++.+.-....+.-..||.|+.|-....     
T Consensus        62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~  141 (389)
T 3kci_A           62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH  141 (389)
T ss_dssp             TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred             CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence            3455555678888888543210           1111111 1123555666665566666678899999965321     


Q ss_pred             ------eeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce-----------eeeee-cccCCCcE
Q 016257          187 ------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-----------KIGHK-RLLRKPAS  248 (392)
Q Consensus       187 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~-----------~~~~~-~~~~~~v~  248 (392)
                            .....+.......|..++....  +     .+.-..++.|+.|-.....           ..... ......+.
T Consensus       142 g~~~~~~~p~~v~~l~~~~i~~va~G~~--h-----s~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~  214 (389)
T 3kci_A          142 GNRSPCDRPRVIESLRGIEVVDVAAGGA--H-----SACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVV  214 (389)
T ss_dssp             SSCCCEEEEEECGGGTTSCEEEEEECSS--E-----EEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEE
T ss_pred             CCCccCcCCeEecccCCCeEEEEEeCcC--e-----EEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEE
Confidence                  0111111111223444444322  2     2334457888888654311           01111 11234566


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEecCCc-----------eeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEe
Q 016257          249 VLSISLDGKYLAMGSKDGDICVVDVKKM-----------EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (392)
Q Consensus       249 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~-----------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~  317 (392)
                      .++......+.+.-..||.|+.|-....           ..+..+.... ...|..++..  ..+.++-..||.|..|-.
T Consensus       215 ~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~-~~~v~~v~~G--~~hs~alt~~G~v~~wG~  291 (389)
T 3kci_A          215 DIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT-GLGVVKVECG--SQFSVALTKSGAVYTWGK  291 (389)
T ss_dssp             EEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT-TSCEEEEEEE--TTEEEEEETTSCEEEEEC
T ss_pred             EEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC-CCcEEEEeCC--CCEEEEEeCCCeEEEEeC
Confidence            7766543456666778999999954321           1111111111 2346666654  335555678899999976


Q ss_pred             ec
Q 016257          318 TV  319 (392)
Q Consensus       318 ~~  319 (392)
                      ..
T Consensus       292 n~  293 (389)
T 3kci_A          292 GD  293 (389)
T ss_dssp             CG
T ss_pred             CC
Confidence            53

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.20  E-value=42  Score=33.28  Aligned_cols=38  Identities=16%  Similarity=-0.004  Sum_probs=32.5

Q ss_pred             CCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee
Q 016257          245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (392)
Q Consensus       245 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  282 (392)
                      ..+.+++..++..++++-+.|+++|+|++.+++++...
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            35667788888899999999999999999999877654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=81.72  E-value=46  Score=33.78  Aligned_cols=38  Identities=13%  Similarity=0.131  Sum_probs=31.8

Q ss_pred             cEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEe
Q 016257          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT  193 (392)
Q Consensus       156 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  193 (392)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            34555667788899999999999999999999988764

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=81.09  E-value=5.2  Score=36.98  Aligned_cols=59  Identities=17%  Similarity=0.316  Sum_probs=42.5

Q ss_pred             cEEEEECCCCCEEEEEeCC------------CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEE
Q 016257          247 ASVLSISLDGKYLAMGSKD------------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA  306 (392)
Q Consensus       247 v~~~~~s~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  306 (392)
                      .-.|+|+|.|.+++.-..+            +.+.+.+..++++.+.+. .+....++.++|+||++.|+..
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~-~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV-GPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEE-CCTTCEEEEEEECTTSSEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEe-CCCCccCcCeeECCCCCEEEEE
Confidence            3568999999976654322            236666777788776654 4448899999999999877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	392
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.004
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.004
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.001
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.003
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.2 bits (152), Expect = 1e-11
 Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 5/125 (4%)

Query: 57  YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK 116
             F   E D   I   P+G+ F   + +  C+LF++      +                 
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-----YSHDNIICGIT 274

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
            +SFS  G    AG  D +  +                  V  +  + D   +AT S D 
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334

Query: 177 SARIW 181
             +IW
Sbjct: 335 FLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 6/150 (4%)

Query: 124 GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT 183
              F +G  D   ++                  +  + F  +    AT S D + R++  
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255

Query: 184 EDGVAWTFLTRNSDEK-IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242
                    + ++    I    FSK G    L       D     V+D    ++ G    
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSG--RLLLAG---YDDFNCNVWDALKADRAGVLAG 310

Query: 243 LRKPASVLSISLDGKYLAMGSKDGDICVVD 272
                S L ++ DG  +A GS D  + + +
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.8 bits (125), Expect = 2e-08
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 3/100 (3%)

Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRI--MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA 170
                + F  +G+ FA G  D   R+  +      +          +  + FS     L 
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286

Query: 171 TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210
               D +  +W          L  + +  +     + DG 
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNR-VSCLGVTDDGM 325

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.9 bits (120), Expect = 1e-07
 Identities = 28/234 (11%), Positives = 58/234 (24%), Gaps = 39/234 (16%)

Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT 172
                + +  D     +   DG L I    +   +   P     V+   ++    ++A  
Sbjct: 56  AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115

Query: 173 STDGSARIW------------KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT--- 217
             D    I+            +   G           +  ++   S D T          
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ 175

Query: 218 ------------------------VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS 253
                                   V     A   ++D+                + +   
Sbjct: 176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF 235

Query: 254 LDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS 307
            +G   A GS D    + D++  +        ++   I  V F  + R++L   
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 289

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.6 bits (114), Expect = 5e-07
 Identities = 28/175 (16%), Positives = 53/175 (30%), Gaps = 6/175 (3%)

Query: 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL 192
           D    +    + +           V+ +  + D+    + + D SA++W   +G+     
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222

Query: 193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI 252
           T +  + I    F  +G     F T        L                +    + +S 
Sbjct: 223 TGHESD-INAICFFPNGN---AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278

Query: 253 SLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS 307
           S  G+ L  G  D +  V D  K +        H    ++ +        V T S
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAG-HDN-RVSCLGVTDDGMAVATGS 331

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.0 bits (141), Expect = 3e-10
 Identities = 27/225 (12%), Positives = 61/225 (27%), Gaps = 54/225 (24%)

Query: 64  GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD 123
           G          G      + +   ++++   G     L ++             + F+ D
Sbjct: 206 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 265

Query: 124 GSRFAAGGVDGHLRIMHWPSLRIILDEPKAH------------KSVLDMDFSLDSEFLAT 171
           G    +G +D  +++ +  +     D    +              VL +  + + E++ +
Sbjct: 266 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS 325

Query: 172 TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231
            S D     W  + G     L  + +                             +V  +
Sbjct: 326 GSKDRGVLFWDKKSGNPLLMLQGHRN-----------------------------SVISV 356

Query: 232 STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM 276
           +  N               S+  +    A GS D    +   KK+
Sbjct: 357 AVANGS-------------SLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 11/133 (8%)

Query: 63  EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK-----KMPPLQDAGPQKC 117
           +    ++     G   V  + +   KL+ +       +         ++  +        
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD------FSLDSEFLAT 171
           ++ + +     +G  D  +      S   +L       SV+ +          +    AT
Sbjct: 314 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373

Query: 172 TSTDGSARIWKTE 184
            S D  ARIWK +
Sbjct: 374 GSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 8e-06
 Identities = 32/207 (15%), Positives = 60/207 (28%), Gaps = 49/207 (23%)

Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS------LRIILDEPKAHK-SVLDMDFSLD 165
           G         DG   AAG +D  +R+    +      L    +    HK SV  + F+ D
Sbjct: 206 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 265

Query: 166 SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225
            + + + S D S ++W  ++                                        
Sbjct: 266 GQSVVSGSLDRSVKLWNLQNA------------------------------------NNK 289

Query: 226 LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285
                 ++          +     ++ + + +Y+  GSKD  +   D K         + 
Sbjct: 290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL-MLQG 348

Query: 286 HLGTSIAL-----VEFCPTQRVVLTAS 307
           H  + I++         P   V  T S
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFATGS 375

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 39/283 (13%), Positives = 79/283 (27%), Gaps = 30/283 (10%)

Query: 68  TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF 127
              ++        +        + +Y  A    +  +    L       C+ FS DG   
Sbjct: 18  PFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYL 77

Query: 128 AAGGVDGHLRIMHWPSLRII------------------LDEPKAHKSVLDMDFSLDSEFL 169
           A G  +   ++       ++                     P +   +  + FS D +FL
Sbjct: 78  ATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136

Query: 170 ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229
           AT +        +                +            P     V       + ++
Sbjct: 137 ATGA------EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 190

Query: 230 DISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLG- 288
           D+ T        +     +V     DGKY+A GS D  + V D +   +       +   
Sbjct: 191 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG 250

Query: 289 ----TSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQ 327
                S+  V F    + V++ S +    +  L    +  + +
Sbjct: 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 9e-10
 Identities = 26/143 (18%), Positives = 44/143 (30%), Gaps = 9/143 (6%)

Query: 40  FSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI 99
              D    S            +      ++   P+G+       +   ++  V       
Sbjct: 201 GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP---- 256

Query: 100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD 159
                K            L F+  G  F + G D  L     P    I  + K   SVL 
Sbjct: 257 ----DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-QSKESSSVLS 311

Query: 160 MDFSLDSEFLATTSTDGSARIWK 182
            D S+D +++ T S D  A +++
Sbjct: 312 CDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 35/262 (13%), Positives = 75/262 (28%), Gaps = 16/262 (6%)

Query: 46  TTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKK 105
           +     SP+        +    +  + P G   +         ++++      I      
Sbjct: 80  SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS 139

Query: 106 MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD 165
             P         L+ S D     +   DG++ +    +  ++            +D S D
Sbjct: 140 SAP-----ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND 194

Query: 166 SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225
              L T   D + R W   +G         S   I    +   G   +L   ++  +  +
Sbjct: 195 GTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ--IFSLGYCPTG--EWLAVGMESSNVEV 250

Query: 226 LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285
           L V     +    H+  +      L  +  GK+     KD  +               + 
Sbjct: 251 LHVNKPDKYQLHLHESCVLS----LKFAYCGKWFVSTGKDNLLNAWRTPYGASIF---QS 303

Query: 286 HLGTSIALVEFCPTQRVVLTAS 307
              +S+   +     + ++T S
Sbjct: 304 KESSSVLSCDISVDDKYIVTGS 325

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.6 bits (132), Expect = 3e-09
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 2/175 (1%)

Query: 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEPKAHK-SVLDMDFSLDSEFLAT 171
           P  C +++ D ++ A    +  + I      + + + E K H   V  +D++ DS  + T
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 172 TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231
             TD +A +W  +       L      +   C       K F   +  R         + 
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 232 STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH 286
             W     K+ +R     L    +   LA GS D    +      E+        
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP 183

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 6/79 (7%)

Query: 65  DPMT-IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD 123
           +P++  A N           N    ++E  G         +     +  G    + ++ D
Sbjct: 8   EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEHNGQVTGVDWAPD 62

Query: 124 GSRFAAGGVDGHLRIMHWP 142
            +R    G D +  +    
Sbjct: 63  SNRIVTCGTDRNAYVWTLK 81

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.4 bits (129), Expect = 8e-09
 Identities = 13/70 (18%), Positives = 28/70 (40%)

Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT 172
              + + F   G    +   D  LR+  + + R +         V  +DF   + ++ T 
Sbjct: 248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG 307

Query: 173 STDGSARIWK 182
           S D + ++W+
Sbjct: 308 SVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 27/180 (15%), Positives = 56/180 (31%), Gaps = 26/180 (14%)

Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS------ 166
              + +  + DG+  A+   D  +R+    +     +  +    V  + ++ +S      
Sbjct: 144 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 203

Query: 167 --------------EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP 212
                          FL + S D + ++W    G+    L  + +  +    F   G   
Sbjct: 204 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW-VRGVLFHSGG--K 260

Query: 213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD 272
           F+       D   L V+D      +          + L       Y+  GS D  + V +
Sbjct: 261 FILSC---ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 18/167 (10%), Positives = 46/167 (27%), Gaps = 14/167 (8%)

Query: 57  YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP-------- 108
             F         +  N  G      + +   +++ V        L   +           
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196

Query: 109 -----LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163
                + +A   +       G    +G  D  +++    +   ++        V  + F 
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256

Query: 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210
              +F+ + + D + R+W  ++      L  +    +    F K   
Sbjct: 257 SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF-VTSLDFHKTAP 302

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 9/157 (5%)

Query: 152 KAHKS-VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210
             H+S V  + F      + + S D + ++W  E G     L  ++D   ++        
Sbjct: 14  SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD----- 68

Query: 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV 270
                          + ++D   +  I          S +SI  +G ++   S+D  I +
Sbjct: 69  -HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127

Query: 271 VDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS 307
            +V+       +   H       V       ++ + S
Sbjct: 128 WEVQTGY-CVKTFTGHREWVRM-VRPNQDGTLIASCS 162

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (91), Expect = 4e-04
 Identities = 22/168 (13%), Positives = 46/168 (27%), Gaps = 6/168 (3%)

Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT 172
            P   + F    S   +   D  +++  + +        K H   +       S  L  +
Sbjct: 18  SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER-TLKGHTDSVQDISFDHSGKLLAS 76

Query: 173 STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232
            +           G          D  +       +G        V       + ++++ 
Sbjct: 77  CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD-----HIVSASRDKTIKMWEVQ 131

Query: 233 TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH 280
           T   +      R+   ++  + DG  +A  S D  + V  V   E   
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 179

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 7e-06
 Identities = 23/158 (14%), Positives = 47/158 (29%), Gaps = 12/158 (7%)

Query: 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS 173
             +  S   DG    +G +D  +R+    +   I            M+       L + +
Sbjct: 177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN 234

Query: 174 TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233
            D + +IW  + G     L   +  +  +     +             D   + ++D+ T
Sbjct: 235 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-----SDDGTVKLWDLKT 289

Query: 234 WNKI-----GHKRLLRKPASVLSISLDGKYLAMGSKDG 266
              I                 +  S      A+GS++G
Sbjct: 290 GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 14/146 (9%), Positives = 40/146 (27%), Gaps = 15/146 (10%)

Query: 45  KTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK 104
            +  V+       +   +    +T  +    +  V    +   K++++  G         
Sbjct: 197 TSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC------L 250

Query: 105 KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-----LDEPKAHKSVLD 159
           +     +           + +       DG +++    +   I     L+   +   V  
Sbjct: 251 QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 310

Query: 160 MDFSLDSEFLATTSTDGSA----RIW 181
           +  S      A  S +G+      + 
Sbjct: 311 IRASNTKLVCAVGSRNGTEETKLLVL 336

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 8/122 (6%)

Query: 157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC 216
                   D +    T+          E G       R  D        +   T+ F   
Sbjct: 200 TPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY 259

Query: 217 TVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM 276
            V       L  +D+     I    L     SV ++S DG  + +G   GD+   D + +
Sbjct: 260 NV-------LESFDLEKNASIKRVPLPHSYYSV-NVSTDGSTVWLGGALGDLAAYDAETL 311

Query: 277 EI 278
           E 
Sbjct: 312 EK 313

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.8 bits (99), Expect = 5e-05
 Identities = 36/269 (13%), Positives = 64/269 (23%), Gaps = 36/269 (13%)

Query: 39  IFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD 98
           I+  D  T        ++ V  E      + A++P G +   +                 
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 99  INL-------LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL--- 148
           + +        AK +           +  + DGS + AG     + +        +    
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183

Query: 149 -------------------DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW 189
                                 +         F  D +  AT            + G   
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 243

Query: 190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASV 249
           T    +  E       S            +      LA YD+     I    L      V
Sbjct: 244 TQEFADLTELYFTGLRSPKDPNQIYGVLNR------LAKYDLKQRKLIKAANLDHTYYCV 297

Query: 250 LSISLDGKYLAMGSKDGDICVVDVKKMEI 278
            +    G  L +G    D+ V +   +E 
Sbjct: 298 -AFDKKGDKLYLGGTFNDLAVFNPDTLEK 325

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 8e-05
 Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 9/127 (7%)

Query: 67  MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD--------AGPQKCL 118
               +    + + CS+ +G   +        D N   +               A P   +
Sbjct: 198 DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI 257

Query: 119 SFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSA 178
            FS         G DG +   +  + + I +  K ++    +  +     L   ++D + 
Sbjct: 258 EFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDS-VVKIACSDNILCLATSDDTF 316

Query: 179 RIWKTED 185
           +     D
Sbjct: 317 KTNAAID 323

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 151 PKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK--IELCRFSK 207
            +A K  + D+        L  TS DGS  ++K +       L ++   K  +  C F  
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66

Query: 208 DGTKPFLFCT 217
           +        T
Sbjct: 67  NTDLQIYVGT 76

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.8 bits (96), Expect = 9e-05
 Identities = 21/144 (14%), Positives = 39/144 (27%), Gaps = 5/144 (3%)

Query: 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSA-RIWKTEDGVAWTF 191
           D  +    +  +      P    S         S        D +      +   V    
Sbjct: 206 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD 265

Query: 192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLS 251
                  +  +  +S      F        +K +L  YD+ T          +   + L 
Sbjct: 266 YRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV----KNNLTDLR 321

Query: 252 ISLDGKYLAMGSKDGDICVVDVKK 275
           +S D K + +   DG I    ++K
Sbjct: 322 LSADRKTVMVRKDDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 14/130 (10%), Positives = 30/130 (23%), Gaps = 4/130 (3%)

Query: 57  YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK 116
           +V     G P    + P          +             D       +P         
Sbjct: 221 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYS 280

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
                   + +      G L      + ++     +   ++ D+  S D + +     DG
Sbjct: 281 VPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDG 336

Query: 177 SARIWKTEDG 186
               +  E  
Sbjct: 337 KIYTFPLEKP 346

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 1/114 (0%)

Query: 72  NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131
           NP G  F  +  +G   L+    G          +  +  +G    L++S DG++ A+  
Sbjct: 198 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 257

Query: 132 VDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTE 184
            D  ++I +  +L++    P   +     +      + L + S +G       E
Sbjct: 258 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLATTS 173
           +      ++    A G +D ++ I        I+    AHK  V ++ +   S  L ++ 
Sbjct: 218 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSG 276

Query: 174 TDGSARIWK 182
            D   + W 
Sbjct: 277 ADACIKRWN 285

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 26/167 (15%), Positives = 45/167 (26%), Gaps = 21/167 (12%)

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK------SVLDMDFSLDSEFLA 170
            +  S  G   A G  +G ++I    +LR + +    H       S+  + FS     LA
Sbjct: 189 SVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247

Query: 171 TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK----------PFLFCTVQR 220
                 S       +      +   S           +                      
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 307

Query: 221 GDKALLAVYDISTWNKI----GHKRLLRKPASVLSISLDGKYLAMGS 263
           G    L  +D+ T  +I     H   +     +L++   G  LA   
Sbjct: 308 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 13/128 (10%), Positives = 32/128 (25%), Gaps = 38/128 (29%)

Query: 151 PKAHKS-VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209
            KAH + +  +     + F  + S DG  ++W                         K  
Sbjct: 10  GKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDN-----------------------KLL 44

Query: 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC 269
                             ++ +                ++   + +   +A  S  GD+ 
Sbjct: 45  DNENPKDKSYSHFVHKSGLHHVDVLQ------------AIERDAFELCLVATTSFSGDLL 92

Query: 270 VVDVKKME 277
              + + +
Sbjct: 93  FYRITRED 100

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 127 FAAGGVDGHLRI--MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIW 181
            A G +D  + +  M+ PS   I+ +     S ++    L+   + +   D + + W
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.7 bits (85), Expect = 0.001
 Identities = 8/51 (15%), Positives = 17/51 (33%)

Query: 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF 205
           K++  +  S D + L +   +G    W    G++           I   + 
Sbjct: 13  KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 7/66 (10%), Positives = 20/66 (30%), Gaps = 2/66 (3%)

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLATTSTD 175
            ++           G +    I +  S +++          +  ++F      +A    D
Sbjct: 286 AITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKD 344

Query: 176 GSARIW 181
           G + + 
Sbjct: 345 GQSFLE 350

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	392
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.98
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.89
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.88
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.84
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.8
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.8
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.79
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.77
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.67
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.55
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.54
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.51
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.49
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.48
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.47
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.42
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.39
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.39
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.38
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.31
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.24
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.23
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.22
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.22
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.21
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.18
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.07
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.98
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.96
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.9
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.78
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.77
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.56
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.47
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.26
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.24
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.08
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.06
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.0
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.99
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.95
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.91
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.89
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.82
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.77
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.65
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.63
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.47
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.32
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.12
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.98
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.64
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.63
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.56
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.55
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.55
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	96.24
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.22
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.94
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.64
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.26
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.94
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	93.8
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	93.72
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	93.01
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	91.84
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	91.25
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	88.62
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	82.11

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-43  Score=308.64  Aligned_cols=286  Identities=14%  Similarity=0.131  Sum_probs=244.2

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ..+|+|++|+|+++   ++++|+       ++.|++|++......   .........+|.+.|.+++|+|++++|++|+.
T Consensus        51 ~~~V~~v~fs~~g~---~latg~-------dg~V~iWd~~~~~~~---~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~  117 (337)
T d1gxra_          51 GEVVCAVTISNPTR---HVYTGG-------KGCVKVWDISHPGNK---SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE  117 (337)
T ss_dssp             SSCCCEEEECSSSS---EEEEEC-------BSEEEEEETTSTTCC---SCSEEEECSCTTSBEEEEEECTTSSEEEEEES
T ss_pred             CCcEEEEEECCCCC---EEEEEE-------CCEEEEEEccCCccc---ceeEEeeecCCCCcEEEEEEcCCCCEEEEeec
Confidence            46899999999984   566443       556999988743321   33445556789999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      |+.|++||+............     .|...+..++|+|++.++++++.|+.|++|++++++.......+...|.+++|+
T Consensus       118 dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s  192 (337)
T d1gxra_         118 ASTLSIWDLAAPTPRIKAELT-----SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS  192 (337)
T ss_dssp             SSEEEEEECCCC--EEEEEEE-----CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             ccccccccccccccccccccc-----cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999998765432222111     266789999999999999999999999999999999888888888899999999


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeeccc
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~  243 (392)
                      +++..+++++.|+.+++||+++++.+..+.  +...|.+++|+|++..     +++++.++.+++||+++.+.. ....|
T Consensus       193 ~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~--~~~~i~~l~~~~~~~~-----l~~~~~d~~i~i~d~~~~~~~-~~~~~  264 (337)
T d1gxra_         193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEW-----LAVGMESSNVEVLHVNKPDKY-QLHLH  264 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTSSCEE-EECCC
T ss_pred             ccccccccccccccccccccccceeecccc--cccceEEEEEcccccc-----cceeccccccccccccccccc-ccccc
Confidence            999999999999999999999999887765  3457999999999987     788999999999999987765 45678


Q ss_pred             CCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       244 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      ...|++++|+|++++|++++.||.|++||+.+++.+...  .| ...|.+++|+|++++|++|+.||+|+||++-
T Consensus       265 ~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~--~~-~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KE-SSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--EC-SSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             ccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc--cC-CCCEEEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence            889999999999999999999999999999999887765  46 7899999999999999999999999999974

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.6e-43  Score=301.19  Aligned_cols=284  Identities=14%  Similarity=0.138  Sum_probs=233.0

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d   84 (392)
                      +...+++++|+++.   ++.+.       ++.+.+|.++        .+.....+.+|.+.|++++|+|+|++|++|+.|
T Consensus        18 ~~~~~~a~~~~g~~---l~~~~-------~~~v~i~~~~--------~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~d   79 (311)
T d1nr0a1          18 GTAVVLGNTPAGDK---IQYCN-------GTSVYTVPVG--------SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH   79 (311)
T ss_dssp             TCCCCCEECTTSSE---EEEEE-------TTEEEEEETT--------CSSCCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCeEEEEEcCCCCE---EEEEe-------CCEEEEEECC--------CCceeEEEcCCCCCEEEEEEeCCCCeEeccccC
Confidence            46678899999865   33222       2346777776        334445678999999999999999999999999


Q ss_pred             CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC--CCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (392)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~  162 (392)
                      |+|++||+.+.+........     .|.++|.+++|+|++++|++++.  +..+++|++++++....+..|...|.+++|
T Consensus        80 g~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~  154 (311)
T d1nr0a1          80 GNVRIWDTTQTTHILKTTIP-----VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF  154 (311)
T ss_dssp             SEEEEEESSSTTCCEEEEEE-----CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEE
T ss_pred             ceEeeeeeeccccccccccc-----cccCccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999887654332211     26789999999999999999875  456999999999988888888889999999


Q ss_pred             cCCCCe-EEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec
Q 016257          163 SLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (392)
Q Consensus       163 ~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~  241 (392)
                      +|++++ |++|+.|+.|++||+++++....+..+. ..|.+++|+|+++.     +++++.|+.+++||+++++....+.
T Consensus       155 ~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~-~~i~~v~~~p~~~~-----l~~~~~d~~v~~~d~~~~~~~~~~~  228 (311)
T d1nr0a1         155 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHT-KFVHSVRYNPDGSL-----FASTGGDGTIVLYNGVDGTKTGVFE  228 (311)
T ss_dssp             CSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCS-SCEEEEEECTTSSE-----EEEEETTSCEEEEETTTCCEEEECB
T ss_pred             cccceeeeccccccccccccccccccccccccccc-ccccccccCccccc-----ccccccccccccccccccccccccc
Confidence            999885 7889999999999999998888877654 47999999999997     7889999999999999877655443


Q ss_pred             -------ccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEE
Q 016257          242 -------LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI  314 (392)
Q Consensus       242 -------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  314 (392)
                             +|...|++++|+|++++|++|+.||.|+|||+++++++..+...+ ......+.+.+++..|++++.||.|++
T Consensus       229 ~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~-~~~~~~~~~~~~~~~l~s~s~dG~i~~  307 (311)
T d1nr0a1         229 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT-RIEDQQLGIIWTKQALVSISANGFINF  307 (311)
T ss_dssp             CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-SGGGCEEEEEECSSCEEEEETTCCEEE
T ss_pred             ccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCC-CccceEEEEEecCCEEEEEECCCEEEE
Confidence                   467889999999999999999999999999999999888774333 333444455566778999999999999


Q ss_pred             EEee
Q 016257          315 TKLT  318 (392)
Q Consensus       315 w~~~  318 (392)
                      ||.+
T Consensus       308 wd~d  311 (311)
T d1nr0a1         308 VNPE  311 (311)
T ss_dssp             EETT
T ss_pred             EeCC
Confidence            9963

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-41  Score=296.76  Aligned_cols=283  Identities=13%  Similarity=0.171  Sum_probs=232.3

Q ss_pred             CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEe
Q 016257           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (392)
Q Consensus        61 ~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d  140 (392)
                      +|...|.+++|+|+|++|++|+ ||.|+|||+.+.........  .....|.+.|.+++|+|++++|++|+.||.|++||
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~--~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd  125 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ--LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEE--EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEE--eeecCCCCcEEEEEEcCCCCEEEEeeccccccccc
Confidence            7999999999999999999987 78999999977653322211  12234788999999999999999999999999999


Q ss_pred             CCCCc--eeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEE
Q 016257          141 WPSLR--IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (392)
Q Consensus       141 ~~~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (392)
                      +....  ....+..+...+..++|+|++.++++++.|+.|++|++++++.......+ ...+.+++|++++..     ++
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~-~~~v~~l~~s~~~~~-----~~  199 (337)
T d1gxra_         126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH-TDGASCIDISNDGTK-----LW  199 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSE-----EE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc-----cc
Confidence            87543  44455666778999999999999999999999999999999887777655 447999999999987     78


Q ss_pred             EeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEee
Q 016257          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (392)
Q Consensus       219 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  298 (392)
                      +++.|+.+++||+++++.+..+ .+...|.+++|+|++++|++++.|+.+++||+++++....  ..| ...|++++|+|
T Consensus       200 ~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~-~~~i~~v~~s~  275 (337)
T d1gxra_         200 TGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL--HLH-ESCVLSLKFAY  275 (337)
T ss_dssp             EEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE--CCC-SSCEEEEEECT
T ss_pred             cccccccccccccccceeeccc-ccccceEEEEEcccccccceeccccccccccccccccccc--ccc-ccccceEEECC
Confidence            8899999999999998887655 4678999999999999999999999999999999887654  467 88999999999


Q ss_pred             CCCeEEEEeCCCeEEEEEeecCccccceeeeeeeeee--eeeceEEEEeeecceeeeecc
Q 016257          299 TQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLAL--FLASAVVFYIFFENSDSFWNF  356 (392)
Q Consensus       299 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~W~~  356 (392)
                      ++++|++++.||.|++|++..............+...  ......+++++.|+.|++||+
T Consensus       276 ~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         276 CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            9999999999999999998866543322111111111  112346778889999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3e-41  Score=290.61  Aligned_cols=286  Identities=13%  Similarity=0.120  Sum_probs=249.9

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .++|++++|+|++   .++++|+.      |+.|++|+++        +......+.+|.+.|.+++|+|++.+++++..
T Consensus        17 ~~~I~~l~~sp~~---~~l~s~s~------Dg~i~iWd~~--------~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~   79 (317)
T d1vyhc1          17 RSPVTRVIFHPVF---SVMVSASE------DATIKVWDYE--------TGDFERTLKGHTDSVQDISFDHSGKLLASCSA   79 (317)
T ss_dssp             SSCEEEEEECSSS---SEEEEEES------SSCEEEEETT--------TCCCCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCeEEEEEcCCC---CEEEEEeC------CCeEEEEECC--------CCCEEEEEeCCCCcEEEEeeeccccccccccc
Confidence            4689999999987   45666554      7789999986        33445678899999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      ++.+.+|+....+.....       ..|...+.++.|+++++.+++++.|+.+++||+++++....+..+...+.+++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (317)
T d1vyhc1          80 DMTIKLWDFQGFECIRTM-------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN  152 (317)
T ss_dssp             TSCCCEEETTSSCEEECC-------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             cccccccccccccccccc-------ccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecc
Confidence            999999987766543222       2367889999999999999999999999999999999888888888899999999


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE---------------EEEEEeCCccEEEE
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL---------------FCTVQRGDKALLAV  228 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---------------~~~~~~~~d~~i~v  228 (392)
                      |++++|++++.|+.|++|++++++....+..+. ..+.++.|+|++.....               ..+.+++.|+.|++
T Consensus       153 ~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~  231 (317)
T d1vyhc1         153 QDGTLIASCSNDQTVRVWVVATKECKAELREHR-HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM  231 (317)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred             cCCCEEEEEeCCCeEEEEeeccceeeEEEecCC-CCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEE
Confidence            999999999999999999999999888887654 47999999987643210               12578889999999


Q ss_pred             EeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeC
Q 016257          229 YDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK  308 (392)
Q Consensus       229 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  308 (392)
                      ||+++++++..+..|...|.+++|+|++++|++|+.||.|++||+++++.+..+ .+| ...|++++|+|++++|++|+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~h-~~~V~~~~~s~~~~~l~s~s~  309 (317)
T d1vyhc1         232 WDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAH-EHFVTSLDFHKTAPYVVTGSV  309 (317)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-ECC-SSCEEEEEECSSSSCEEEEET
T ss_pred             EECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE-cCC-CCCEEEEEEcCCCCEEEEEeC
Confidence            999999999999999999999999999999999999999999999999988777 578 899999999999999999999


Q ss_pred             CCeEEEEE
Q 016257          309 EWGAMITK  316 (392)
Q Consensus       309 dg~i~iw~  316 (392)
                      ||+|++||
T Consensus       310 Dg~i~iWd  317 (317)
T d1vyhc1         310 DQTVKVWE  317 (317)
T ss_dssp             TSEEEEEC
T ss_pred             CCeEEEeC
Confidence            99999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3e-41  Score=290.74  Aligned_cols=281  Identities=15%  Similarity=0.137  Sum_probs=231.6

Q ss_pred             CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC
Q 016257           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (392)
Q Consensus        62 h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~  141 (392)
                      +.+.+..++++|+|+.|+.++ ++.+.+|++.+......+.       .|...|++++|+|+|++|++|+.||+|++||+
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~-------~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~   87 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYT-------EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDT   87 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEEC-------CCSSCEEEEEECTTSSEEEEEETTSEEEEEES
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEc-------CCCCCEEEEEEeCCCCeEeccccCceEeeeee
Confidence            456778899999999999975 5569999998776544432       37789999999999999999999999999999


Q ss_pred             CCCcee--ecccCCCCcEEEEEecCCCCeEEEEcC--CCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEE
Q 016257          142 PSLRII--LDEPKAHKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (392)
Q Consensus       142 ~~~~~~--~~~~~~~~~i~~i~~~~~~~~l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (392)
                      .+++..  ..+..|..+|.+++|+|++++|++++.  +..+++|++++++....+..+. ..|.+++|+|+++..    +
T Consensus        88 ~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~-~~v~~v~~~~~~~~~----l  162 (311)
T d1nr0a1          88 TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA-RAMNSVDFKPSRPFR----I  162 (311)
T ss_dssp             SSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCS-SCEEEEEECSSSSCE----E
T ss_pred             eccccccccccccccCccccccccccccccccccccccccccccccccccccccccccc-cccccccccccceee----e
Confidence            887643  345667789999999999999998875  4569999999998888877654 479999999998852    5


Q ss_pred             EEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee------ccccCcce
Q 016257          218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK------RLHLGTSI  291 (392)
Q Consensus       218 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~i  291 (392)
                      ++++.|+.|++||+++++.......|...|+++.|+|++++|++++.|+.|++||+.+++....+.      .+| ...|
T Consensus       163 ~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h-~~~V  241 (311)
T d1nr0a1         163 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH-SGSV  241 (311)
T ss_dssp             EEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS-SSCE
T ss_pred             cccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            788999999999999999999999999999999999999999999999999999999877655442      346 7889


Q ss_pred             EEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeee----eeeeeeeeeceEEEEeeecceeeeecc
Q 016257          292 ALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIY----SLLLALFLASAVVFYIFFENSDSFWNF  356 (392)
Q Consensus       292 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~i~~W~~  356 (392)
                      ++++|+|++++|++|+.||.|+||+++..+..+.+...    ............+++++.||.|++||.
T Consensus       242 ~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         242 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP  310 (311)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred             cccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeC
Confidence            99999999999999999999999998866544333211    111122223456788889999999995

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-40  Score=293.83  Aligned_cols=288  Identities=15%  Similarity=0.175  Sum_probs=223.0

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      -.||+|++|+|++.   ++++|+.      ++.|++|+.+..      .......+++|.++|.+++|+|++++|++++.
T Consensus         7 ~~pIt~~~~s~dg~---~la~~~~------~~~i~iw~~~~~------~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~   71 (371)
T d1k8kc_           7 VEPISCHAWNKDRT---QIAICPN------NHEVHIYEKSGN------KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT   71 (371)
T ss_dssp             SSCCCEEEECTTSS---EEEEECS------SSEEEEEEEETT------EEEEEEEEECCSSCEEEEEEETTTTEEEEEET
T ss_pred             CCCeEEEEECCCCC---EEEEEeC------CCEEEEEECCCC------CEEEEEEecCCCCCEEEEEECCCCCEEEEEEC
Confidence            46899999999984   4665544      567999998632      23355678999999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCce----eecccCCCCcEEE
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI----ILDEPKAHKSVLD  159 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~  159 (392)
                      |++|+|||+.+.........     ..|...|.+++|+|+++.|++++.|+.+++|+++....    ......+...|.+
T Consensus        72 D~~i~vWd~~~~~~~~~~~~-----~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~  146 (371)
T d1k8kc_          72 DRNAYVWTLKGRTWKPTLVI-----LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS  146 (371)
T ss_dssp             TSCEEEEEEETTEEEEEEEC-----CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred             CCeEEEEeeccccccccccc-----ccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccc
Confidence            99999999987764333221     13678999999999999999999999999999876543    2223456678999


Q ss_pred             EEecCCCCeEEEEcCCCcEEEEECCCCe------------------eeEEEecCCCcceEEEEecCCCCcceEEEEEEeC
Q 016257          160 MDFSLDSEFLATTSTDGSARIWKTEDGV------------------AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (392)
Q Consensus       160 i~~~~~~~~l~~~~~d~~i~vwd~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (392)
                      ++|+|++++|++++.|+++++|+.....                  ...... .+...+.+++|+|+++.     +++++
T Consensus       147 v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~-----l~s~~  220 (371)
T d1k8kc_         147 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSR-----VAWVS  220 (371)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSE-----EEEEE
T ss_pred             ccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeecc-CccCcEEEEEeeccccc-----ccccc
Confidence            9999999999999999999999986432                  223333 33457999999999987     78889


Q ss_pred             CccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCC--ceeeee------------------
Q 016257          222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK--MEINHW------------------  281 (392)
Q Consensus       222 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~------------------  281 (392)
                      .|+.|++||+++++.+..+..|..+|.+++|+|++++|++|. |+.+++|....  ++....                  
T Consensus       221 ~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (371)
T d1k8kc_         221 HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE  299 (371)
T ss_dssp             TTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHH
T ss_pred             cCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCcccccccccccee
Confidence            999999999999999999999999999999999998888765 77777765433  221110                  


Q ss_pred             --------------------eeccccCcceEEEEEeeCCC----eEEEEeCCCeEEEEEeec
Q 016257          282 --------------------SKRLHLGTSIALVEFCPTQR----VVLTASKEWGAMITKLTV  319 (392)
Q Consensus       282 --------------------~~~~~~~~~i~~~~~s~~~~----~l~~~~~dg~i~iw~~~~  319 (392)
                                          ....| .+.|+++++.+.+.    .|+|++.||.|++|+++.
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~H-~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         300 RFQNLDKKASSEGSAAAGAGLDSLH-KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             HHHHCCCCC---------CCCSSSS-SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             eEecccceeEEeccccccceecccc-cCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                                01125 56778888777542    477888888888887754

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-39  Score=281.02  Aligned_cols=286  Identities=15%  Similarity=0.196  Sum_probs=247.3

Q ss_pred             eEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC
Q 016257           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (392)
Q Consensus        55 ~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (392)
                      ....|+||.++|++++|+|++++|++|+.||+|+|||+.+++....+.       .|...|.+++|+|++.+++++..++
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~-------~h~~~V~~~~~~~~~~~~~~~~~~~   81 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-------GHTDSVQDISFDHSGKLLASCSADM   81 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC-------CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEe-------CCCCcEEEEeeeccccccccccccc
Confidence            345789999999999999999999999999999999999887655543       2678999999999999999999999


Q ss_pred             cEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE
Q 016257          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (392)
Q Consensus       135 ~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (392)
                      .+.+|+....+.......+...+.++.|+|+++.+++++.|+.+++||+++++....+..+. ..+.+++|+|++..   
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---  157 (317)
T d1vyhc1          82 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR-EWVRMVRPNQDGTL---  157 (317)
T ss_dssp             CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEECTTSSE---
T ss_pred             ccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCC-CcceeeecccCCCE---
Confidence            99999999888888888888899999999999999999999999999999999988887664 47999999999987   


Q ss_pred             EEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCC--------------------CEEEEEeCCCcEEEEecC
Q 016257          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG--------------------KYLAMGSKDGDICVVDVK  274 (392)
Q Consensus       215 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~--------------------~~l~~~~~dg~i~iwd~~  274 (392)
                        +++++.|+.|++|+.++++....+..+...+.+++++|++                    .++++++.|+.|++||++
T Consensus       158 --l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~  235 (317)
T d1vyhc1         158 --IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS  235 (317)
T ss_dssp             --EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred             --EEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECC
Confidence              7899999999999999999988888899999999998753                    478999999999999999


Q ss_pred             CceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceee-eeeeee--eeeeceEEEEeeeccee
Q 016257          275 KMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI-YSLLLA--LFLASAVVFYIFFENSD  351 (392)
Q Consensus       275 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~d~~i  351 (392)
                      +++.+..+ .+| ...|.+++|+|++++|++|+.||.|++|++...+....+.. ...+..  .......+++++.|+.|
T Consensus       236 ~~~~~~~~-~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i  313 (317)
T d1vyhc1         236 TGMCLMTL-VGH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTV  313 (317)
T ss_dssp             TTEEEEEE-ECC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEE
T ss_pred             CCcEEEEE-eCC-CCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeE
Confidence            99988877 578 88999999999999999999999999999987655443321 111111  11234567888899999


Q ss_pred             eeec
Q 016257          352 SFWN  355 (392)
Q Consensus       352 ~~W~  355 (392)
                      ++||
T Consensus       314 ~iWd  317 (317)
T d1vyhc1         314 KVWE  317 (317)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.5e-40  Score=291.03  Aligned_cols=290  Identities=17%  Similarity=0.203  Sum_probs=228.1

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccc----------cCCceEEEeeCCCCCeeEEEEcC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY----------TSPLVTYVFDESEGDPMTIAVNP   73 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~----------~~~~~~~~~~~h~~~v~~~~~sp   73 (392)
                      .++|+|++|+|++   .++++|       .++.|++|++........          ..........+|...|++++|+|
T Consensus        62 ~~~V~~l~fs~dg---~~lasg-------~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  131 (388)
T d1erja_          62 TSVVCCVKFSNDG---EYLATG-------CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP  131 (388)
T ss_dssp             SSCCCEEEECTTS---SEEEEE-------CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT
T ss_pred             CCcEEEEEECCCC---CEEEEE-------eCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECC
Confidence            4689999999998   456644       356799998763221100          01112223456888999999999


Q ss_pred             CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCC
Q 016257           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (392)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  153 (392)
                      ++++|++|+.||.|++|+...++......       .|...|.++.|++++..+++++.++.+++||.++.........+
T Consensus       132 ~~~~l~s~~~dg~v~i~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  204 (388)
T d1erja_         132 DGKFLATGAEDRLIRIWDIENRKIVMILQ-------GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE  204 (388)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEEC-------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred             CCCcceecccccccccccccccccccccc-------cccccccccccccccccccccccceeeeeeeccccccccccccc
Confidence            99999999999999999988776544432       36789999999999999999999999999999988776555444


Q ss_pred             CCcEEEEEec-CCCCeEEEEcCCCcEEEEECCCCeeeEEEec------CCCcceEEEEecCCCCcceEEEEEEeCCccEE
Q 016257          154 HKSVLDMDFS-LDSEFLATTSTDGSARIWKTEDGVAWTFLTR------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALL  226 (392)
Q Consensus       154 ~~~i~~i~~~-~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i  226 (392)
                      . ....+.++ +++++|++++.|+.|++||.+++.....+..      .+...|.+++|+|++..     +++++.|+.|
T Consensus       205 ~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~-----l~s~~~d~~i  278 (388)
T d1erja_         205 D-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS-----VVSGSLDRSV  278 (388)
T ss_dssp             S-CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE-----EEEEETTSEE
T ss_pred             c-ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCE-----EEEEECCCcE
Confidence            4 44445554 5889999999999999999999887766542      24557999999999987     7899999999


Q ss_pred             EEEeCCCcee------------eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEE
Q 016257          227 AVYDISTWNK------------IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALV  294 (392)
Q Consensus       227 ~v~d~~~~~~------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~  294 (392)
                      ++||+++.+.            ......|...|.+++|+|++++|++|+.||.|++||+++++.+..+ .+| .+.|.++
T Consensus       279 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l-~~H-~~~V~~~  356 (388)
T d1erja_         279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML-QGH-RNSVISV  356 (388)
T ss_dssp             EEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE-ECC-SSCEEEE
T ss_pred             EEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE-eCC-CCCEEEE
Confidence            9999986543            2334556789999999999999999999999999999999988877 588 8999999


Q ss_pred             EE------eeCCCeEEEEeCCCeEEEEEee
Q 016257          295 EF------CPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       295 ~~------s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      ++      +|++++|++|+.||+|+||+++
T Consensus       357 ~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         357 AVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            75      5689999999999999999986

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-38  Score=283.17  Aligned_cols=289  Identities=16%  Similarity=0.160  Sum_probs=225.4

Q ss_pred             eCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeecccc-----------CCCCCCCCCeEEEEecCCCCEEE
Q 016257           60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKK-----------MPPLQDAGPQKCLSFSVDGSRFA  128 (392)
Q Consensus        60 ~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-----------~~~~~~~~~v~~~~~s~~~~~l~  128 (392)
                      .+|.+.|+|++|+|||++||+|+ |+.|+|||+.+++....+....           .....|...|.+++|+|++++|+
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            36999999999999999999986 8899999998877554432211           11223667899999999999999


Q ss_pred             EEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecC-
Q 016257          129 AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK-  207 (392)
Q Consensus       129 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-  207 (392)
                      +|+.||.|++||...++.......|...|.++.|++++..+++++.++.+++||.++.........+.  ...++.+.+ 
T Consensus       138 s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~  215 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED--GVTTVAVSPG  215 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS--CEEEEEECST
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccccccccc--ccccccccCC
Confidence            99999999999999999988888888899999999999999999999999999999888777665443  345555555 


Q ss_pred             CCCcceEEEEEEeCCccEEEEEeCCCceeeeee-------cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeee
Q 016257          208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK-------RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH  280 (392)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  280 (392)
                      ++..     +++++.|+.|++||.+++.....+       ..|...|.+++|+|++++|++++.||.|++||+++++...
T Consensus       216 ~~~~-----l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~  290 (388)
T d1erja_         216 DGKY-----IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS  290 (388)
T ss_dssp             TCCE-----EEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------
T ss_pred             CCCe-----EEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccc
Confidence            5665     788999999999999987765443       3467889999999999999999999999999998654322


Q ss_pred             -----------eeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccccee--------eeeeeee-eeeece
Q 016257          281 -----------WSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQ--------IYSLLLA-LFLASA  340 (392)
Q Consensus       281 -----------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--------~~~~~~~-~~~~~~  340 (392)
                                 .....| ...|.+++|+|++++|++|+.||.|++||+...+......        +...... ......
T Consensus       291 ~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~  369 (388)
T d1erja_         291 DSKTPNSGTCEVTYIGH-KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN  369 (388)
T ss_dssp             --------CEEEEEECC-SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCE
T ss_pred             ccccccccceeeecccc-cceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCC
Confidence                       112356 7889999999999999999999999999998665433221        1111000 011334


Q ss_pred             EEEEeeecceeeeeccc
Q 016257          341 VVFYIFFENSDSFWNFP  357 (392)
Q Consensus       341 ~~~~~~~d~~i~~W~~~  357 (392)
                      .+++++.|++|++|+++
T Consensus       370 ~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         370 VFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEEETTSEEEEEEEE
T ss_pred             EEEEEeCCCEEEEEeee
Confidence            67888899999999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.8e-39  Score=284.31  Aligned_cols=244  Identities=11%  Similarity=0.076  Sum_probs=202.5

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~  142 (392)
                      .++|+|++|+|++++||+|+.|+.|+|||+.+++........     .|.++|.+++|+|++++|++++.|++|++||++
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~-----gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~   81 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-----EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   81 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-----CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEec-----CCCCCEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence            578999999999999999999999999999877532222111     388999999999999999999999999999998


Q ss_pred             CCce--eecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeee---EEEecCCCcceEEEEecCCCCcceEEEE
Q 016257          143 SLRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW---TFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (392)
Q Consensus       143 ~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (392)
                      +++.  ...+..+...|.+++|+|+++.|++++.|+.+++|++......   ......+...|.+++|+|++..     +
T Consensus        82 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-----l  156 (371)
T d1k8kc_          82 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL-----L  156 (371)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE-----E
T ss_pred             ccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccc-----e
Confidence            7653  3445566778999999999999999999999999998765433   2233345568999999999987     7


Q ss_pred             EEeCCccEEEEEeCCCc------------------eeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceee
Q 016257          218 VQRGDKALLAVYDISTW------------------NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN  279 (392)
Q Consensus       218 ~~~~~d~~i~v~d~~~~------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  279 (392)
                      ++++.|+.+++||....                  +.+.....|...+.+++|+|++++|++++.|+.|++||+.+++.+
T Consensus       157 ~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~  236 (371)
T d1k8kc_         157 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV  236 (371)
T ss_dssp             EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred             eccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccce
Confidence            89999999999998643                  234445667788999999999999999999999999999998887


Q ss_pred             eeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          280 HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       280 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      ..+ ..| ..+|.+++|+|++++|++| .|+.+++|....
T Consensus       237 ~~~-~~~-~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~  273 (371)
T d1k8kc_         237 ATL-ASE-TLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  273 (371)
T ss_dssp             EEE-ECS-SCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             eee-ecc-cccceeeeecCCCCEEEEE-cCCceEEEEeeC
Confidence            776 467 8899999999999877765 477888877653

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.5e-38  Score=270.20  Aligned_cols=285  Identities=13%  Similarity=0.148  Sum_probs=220.0

Q ss_pred             ceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC
Q 016257           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (392)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (392)
                      .....+.||.+.|++++|+|++++|++|+.||+|++||+++++....+.      ..|...|.+++|+|++++ ++++.|
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~------~~h~~~v~~v~~~~~g~~-~~~~~d   75 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP------DVHATMITGIKTTSKGDL-FTVSWD   75 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS------CSCSSCEEEEEECTTSCE-EEEETT
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc------CCCCCcEEEEEeecccee-ecccce
Confidence            3457789999999999999999999999999999999998876543322      137789999999999975 556679


Q ss_pred             CcEEEEeCCCCcee---ecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCC
Q 016257          134 GHLRIMHWPSLRII---LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (392)
Q Consensus       134 g~i~i~d~~~~~~~---~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (392)
                      +.+++|+.......   .....+...+.+++|+|+++.+++++ ++.+++|+...  .... .  ....+.+++|+|++.
T Consensus        76 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~-~--~~~~~~~~~~s~~~~  149 (299)
T d1nr0a2          76 DHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEV-P--ISYNSSCVALSNDKQ  149 (299)
T ss_dssp             TEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEE-E--CSSCEEEEEECTTSC
T ss_pred             eeEEEeccCCccccccccccccccccccccccccccccccccc-ccccccccccc--cccc-c--ccccccccccccccc
Confidence            99999998654321   11123445789999999998777665 57899999542  2222 2  223578999999998


Q ss_pred             cceEEEEEEeCCccEEEEEeCCCceeee-eecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee--ecccc
Q 016257          211 KPFLFCTVQRGDKALLAVYDISTWNKIG-HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS--KRLHL  287 (392)
Q Consensus       211 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~  287 (392)
                      .     +++++.|+.|.+||+++++... ....|...|++++|+|++++|++++.|+.|++||+.++......  ...| 
T Consensus       150 ~-----l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h-  223 (299)
T d1nr0a2         150 F-----VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH-  223 (299)
T ss_dssp             E-----EEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC-
T ss_pred             c-----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            7     7889999999999998876543 34567889999999999999999999999999999887654432  2457 


Q ss_pred             CcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcccccee-----eeeeeeeeeeeceEEEEeeecceeeeeccc
Q 016257          288 GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQ-----IYSLLLALFLASAVVFYIFFENSDSFWNFP  357 (392)
Q Consensus       288 ~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~  357 (392)
                      ...|++++|+|++++|++|+.||.|++|++..+.......     ..............+++++.|+.|++||++
T Consensus       224 ~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         224 TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             ccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence            8899999999999999999999999999998665433211     000111122345678888999999999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-37  Score=270.05  Aligned_cols=284  Identities=16%  Similarity=0.197  Sum_probs=237.0

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      .++|+|++|+|++.   ++++|+.      |+.|++|++.        .......+..|...|.+++|+|+++++++|+.
T Consensus        55 ~~~I~~l~~s~~~~---~l~sgs~------Dg~v~iWd~~--------~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~  117 (340)
T d1tbga_          55 LAKIYAMHWGTDSR---LLVSASQ------DGKLIIWDSY--------TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL  117 (340)
T ss_dssp             SSCEEEEEECTTSS---EEEEEET------TTEEEEEETT--------TTEEEEEEECSCSCEEEEEECTTSSEEEEEET
T ss_pred             CCCEEEEEECCCCC---EEEEEEC------CCceeeeecc--------cceeEEEEecccccEEeeEeeccceeeeeecc
Confidence            46899999999984   5666554      7789999876        44556778899999999999999999999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      |+.+.+|+..............   ..|......... ..+..+.....+.....+.............+...+....+.
T Consensus       118 d~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (340)
T d1tbga_         118 DNICSIYNLKTREGNVRVSREL---AGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA  193 (340)
T ss_dssp             TCCEEEEESSSSCSCCCEEEEE---CCCSSCEEEEEE-EETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred             cceeecccccccccccccceec---cccccccccccc-ccccccccccccccccccccccccccccccccceeEeeeccc
Confidence            9999999987655332222111   113334444444 445577788889999999988877776667777789999999


Q ss_pred             CCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeee--c
Q 016257          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK--R  241 (392)
Q Consensus       164 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~--~  241 (392)
                      +.+.++++++.|+.|++||+++++++..+..+. ..|.+++|+|++..     +++++.|+.|++||++..+....+  .
T Consensus       194 ~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~-~~i~~v~~~p~~~~-----l~s~s~d~~i~~~~~~~~~~~~~~~~~  267 (340)
T d1tbga_         194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHE-SDINAICFFPNGNA-----FATGSDDATCRLFDLRADQELMTYSHD  267 (340)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred             cccceeEEeecCceEEEEECCCCcEEEEEeCCC-CCeEEEEECCCCCE-----EEEEeCCCeEEEEeecccccccccccc
Confidence            999999999999999999999999999887654 58999999999987     789999999999999988776554  3


Q ss_pred             ccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEE
Q 016257          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (392)
Q Consensus       242 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  316 (392)
                      .+...+++++|+|++++|++|+.||.|++||+.+++.+..+ .+| ..+|++++|+|++++|++|+.||.|++|+
T Consensus       268 ~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~H-~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL-AGH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEE-CCC-SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEE-cCC-CCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            45677999999999999999999999999999999988877 588 89999999999999999999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-36  Score=263.59  Aligned_cols=288  Identities=13%  Similarity=0.105  Sum_probs=229.6

Q ss_pred             ceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC
Q 016257           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (392)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (392)
                      ....+|+||.+.|++++|+|++++|++|+.||+|+|||+.+++....+.       .|...|.+++|+|+++++++|+.|
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~-------~~~~~v~~v~~~~~~~~l~~~~~d  118 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-------LRSSWVMTCAYAPSGNYVACGGLD  118 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEE-------CSCSCEEEEEECTTSSEEEEEETT
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEe-------cccccEEeeEeeccceeeeeeccc
Confidence            4567899999999999999999999999999999999998887655443       267899999999999999999999


Q ss_pred             CcEEEEeCCCCc----eeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCC
Q 016257          134 GHLRIMHWPSLR----IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (392)
Q Consensus       134 g~i~i~d~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (392)
                      +.+++|+.....    ....+..+........ ...+..+.....+.....+.............. ...+....+.+.+
T Consensus       119 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  196 (340)
T d1tbga_         119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCR-FLDDNQIVTSSGDTTCALWDIETGQQTTTFTGH-TGDVMSLSLAPDT  196 (340)
T ss_dssp             CCEEEEESSSSCSCCCEEEEECCCSSCEEEEE-EEETTEEEEEETTTEEEEEETTTTEEEEEEECC-SSCEEEEEECTTS
T ss_pred             ceeecccccccccccccceecccccccccccc-ccccccccccccccccccccccccccccccccc-ceeEeeecccccc
Confidence            999999986543    2233334444444443 444567778888899999998877666655544 3468889999988


Q ss_pred             CcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCc
Q 016257          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT  289 (392)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  289 (392)
                      ..     +++++.|+.|++||+++++.+..+..|...|++++|+|++++|++|+.||.|++||++..+............
T Consensus       197 ~~-----~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~  271 (340)
T d1tbga_         197 RL-----FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC  271 (340)
T ss_dssp             SE-----EEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred             ce-----eEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccC
Confidence            86     7889999999999999999999999999999999999999999999999999999999988766553332267


Q ss_pred             ceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceee-eeeeeee--eeeceEEEEeeecceeeeec
Q 016257          290 SIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI-YSLLLAL--FLASAVVFYIFFENSDSFWN  355 (392)
Q Consensus       290 ~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~d~~i~~W~  355 (392)
                      .|.+++|+|++++|++|+.||.|++|++........... ...+...  ......+++++.|+.|++||
T Consensus       272 ~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            899999999999999999999999999876544332210 0111111  12344677888999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.3e-37  Score=264.09  Aligned_cols=282  Identities=17%  Similarity=0.140  Sum_probs=214.9

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEe-eCCCCCeeEEEEcCCCCeEEEEe
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-DESEGDPMTIAVNPSGDDFVCST   82 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~~~~   82 (392)
                      ..+|+|++|+|+++   ++++|+.      |+.|++|+++.        ......+ .+|...|++++|+|++++ ++++
T Consensus        12 ~~~V~~l~~s~dg~---~l~s~s~------Dg~v~vWd~~~--------~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~   73 (299)
T d1nr0a2          12 NKAITALSSSADGK---TLFSADA------EGHINSWDIST--------GISNRVFPDVHATMITGIKTTSKGDL-FTVS   73 (299)
T ss_dssp             SSCEEEEEECTTSS---EEEEEET------TSCEEEEETTT--------CCEEECSSCSCSSCEEEEEECTTSCE-EEEE
T ss_pred             CCCcEEEEECCCCC---EEEEEcC------CCeEEEEECCC--------CcEEEEEcCCCCCcEEEEEeecccee-eccc
Confidence            46899999999984   5666554      67799998762        2333334 578999999999999875 5566


Q ss_pred             CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEe
Q 016257           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (392)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~  162 (392)
                      .|+.+++|+..........    .....+...+.+++|+++++.+++++ ++.+++|+....  ...  .....+.+++|
T Consensus        74 ~d~~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~--~~~--~~~~~~~~~~~  144 (299)
T d1nr0a2          74 WDDHLKVVPAGGSGVDSSK----AVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKL--TEV--PISYNSSCVAL  144 (299)
T ss_dssp             TTTEEEEECSSSSSSCTTS----CCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEE--EEE--ECSSCEEEEEE
T ss_pred             ceeeEEEeccCCccccccc----cccccccccccccccccccccccccc-cccccccccccc--ccc--ccccccccccc
Confidence            7899999997654321110    11112567889999999998877765 678999985432  211  22346788999


Q ss_pred             cCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeee---e
Q 016257          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG---H  239 (392)
Q Consensus       163 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~---~  239 (392)
                      +|++++|++++.|+.|++||+++++........+...|.+++|+|++..     +++++.++.|++||+.++....   .
T Consensus       145 s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----l~~~~~d~~i~~~~~~~~~~~~~~~~  219 (299)
T d1nr0a2         145 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF-----LVATDQSRKVIPYSVANNFELAHTNS  219 (299)
T ss_dssp             CTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE-----EEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccccccccc
Confidence            9999999999999999999998887655444445568999999999987     7889999999999998766543   3


Q ss_pred             ecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeee-eeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEee
Q 016257          240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW-SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       240 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~  318 (392)
                      +..|...|++++|+|++++|++|+.||.|++||+++++.... ....|....+.++.| +++++|++++.|+.|++|++.
T Consensus       220 ~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         220 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             ccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            456788999999999999999999999999999987654332 223442556777765 567899999999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.3e-37  Score=265.13  Aligned_cols=294  Identities=13%  Similarity=0.071  Sum_probs=222.6

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCC-CCCeeEEEEcC--CCCeEEEE
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-EGDPMTIAVNP--SGDDFVCS   81 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp--~~~~l~~~   81 (392)
                      +.+++++|+|++..   ++++.+       +.+.++.++....    .......+.+| ...|++++|+|  ++++|++|
T Consensus        18 ~~~t~l~~~~~~~~---la~~~~-------~~~~i~~~~~~~~----~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasg   83 (325)
T d1pgua1          18 NFTTHLSYDPTTNA---IAYPCG-------KSAFVRCLDDGDS----KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSG   83 (325)
T ss_dssp             TCCCCCEEETTTTE---EEEEET-------TEEEEEECCSSCC----SSCSEEEECTTTTSCEEEEEECSSTTCCEEEEE
T ss_pred             CCeEEEEECCCCCE---EEEEeC-------CCEEEEEEeCCCC----CccceEEEeCCCCCCEEEEEEeeCCCCCEEEEE
Confidence            46688999999865   333322       1234555553322    22233456677 46899999998  56799999


Q ss_pred             eCCCeEEEEEEeCCccceeeccccC-CCCCCCCCeEEEEecCCCCEEEEEeC--CCcEEEEeCCCCceeecccCCCCcEE
Q 016257           82 TTNGGCKLFEVYGGATDINLLAKKM-PPLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHKSVL  158 (392)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~  158 (392)
                      +.||+|+|||+...+.......... ....|.++|.+++|++++++|++++.  ++.+++|+.++++.+..+..|...|.
T Consensus        84 s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  163 (325)
T d1pgua1          84 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRIN  163 (325)
T ss_dssp             ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEE
T ss_pred             eCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccc
Confidence            9999999999987664433222110 11136789999999999999988764  67899999999999888888888999


Q ss_pred             EEEecCCCCe-EEEEcCCCcEEEEECCCCeeeEEEec--CCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCce
Q 016257          159 DMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTR--NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (392)
Q Consensus       159 ~i~~~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~  235 (392)
                      +++|+|++.+ +++++.|+.+++||++..+.......  .+...|.+++|+|++...    +++++.|+.|++||+++++
T Consensus       164 ~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~----l~s~~~d~~i~iwd~~~~~  239 (325)
T d1pgua1         164 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF----VITVGSDRKISCFDGKSGE  239 (325)
T ss_dssp             EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCE----EEEEETTCCEEEEETTTCC
T ss_pred             cccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeecccccee----ccccccccceeeeeecccc
Confidence            9999998875 67899999999999998877766644  234579999999985431    6888999999999999999


Q ss_pred             eeeeecccCCCcEEEEEC---CCCCEEEEEeCCCcEEEEecCCceeeeeeec-cccCcceEEEEEeeC-CCeEEEEeCCC
Q 016257          236 KIGHKRLLRKPASVLSIS---LDGKYLAMGSKDGDICVVDVKKMEINHWSKR-LHLGTSIALVEFCPT-QRVVLTASKEW  310 (392)
Q Consensus       236 ~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~i~~~~~s~~-~~~l~~~~~dg  310 (392)
                      .+..+..|..++..+.|+   |+|++|++++.|+.|+|||+++++.+..+.. .+ ...+..+++.+. +.+|++++.||
T Consensus       240 ~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~s~dg  318 (325)
T d1pgua1         240 FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ-QLGNQQVGVVATGNGRIISLSLDG  318 (325)
T ss_dssp             EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT-CGGGCEEEEEEEETTEEEEEETTS
T ss_pred             ccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCC-cccCeEEEEEECCCCEEEEEECCC
Confidence            998888887777655555   7899999999999999999999998876532 22 333444444433 34789999999


Q ss_pred             eEEEEEe
Q 016257          311 GAMITKL  317 (392)
Q Consensus       311 ~i~iw~~  317 (392)
                      .|++|++
T Consensus       319 ~i~vwdl  325 (325)
T d1pgua1         319 TLNFYEL  325 (325)
T ss_dssp             CEEEEET
T ss_pred             EEEEEEC
Confidence            9999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9e-35  Score=254.01  Aligned_cols=299  Identities=12%  Similarity=0.078  Sum_probs=222.9

Q ss_pred             EEEeeCCCCCe-eEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC
Q 016257           56 TYVFDESEGDP-MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (392)
Q Consensus        56 ~~~~~~h~~~v-~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (392)
                      +.+|+||.+.| +|++|  ++++|++|+.||+|+|||+.+++....+.       .|.++|.+++|+|+ .+|++|+.|+
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~-------~H~~~V~~l~~s~~-~~l~s~s~D~   74 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLS-------GHDGGVWALKYAHG-GILVSGSTDR   74 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEE-------CCSSCEEEEEEETT-TEEEEEETTC
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEE-------CCCCCEEEEEEcCC-CEEEEEeccc
Confidence            45689999886 56555  67899999999999999998887665553       37889999999986 4899999999


Q ss_pred             cEEEEeCCCCceeecccCCCC--cEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCc--------------
Q 016257          135 HLRIMHWPSLRIILDEPKAHK--SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE--------------  198 (392)
Q Consensus       135 ~i~i~d~~~~~~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--------------  198 (392)
                      .|++|++...+..........  ......++++++++++++.|+.|++||+++.............              
T Consensus        75 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (355)
T d1nexb2          75 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  154 (355)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEE
T ss_pred             ccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecccccccee
Confidence            999999998877655444433  4566778889999999999999999999876543332111100              


Q ss_pred             ------ceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEe
Q 016257          199 ------KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (392)
Q Consensus       199 ------~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  272 (392)
                            ......+.+++..     ++.+..|+.+++||+++++.+.....+...+.++.++|++.++++++.|+.|++||
T Consensus       155 ~~~~~~~~~v~~~~~~~~~-----~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  229 (355)
T d1nexb2         155 GVLRGHMASVRTVSGHGNI-----VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD  229 (355)
T ss_dssp             EEEECCSSCEEEEEEETTE-----EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             eeeeeccccccccccccce-----eeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeee
Confidence                  0112334455554     68888999999999999999888888889999999999999999999999999999


Q ss_pred             cCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeee-eeeeeeeeeceEEEEeeeccee
Q 016257          273 VKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIY-SLLLALFLASAVVFYIFFENSD  351 (392)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~i  351 (392)
                      +++++....+ .+| ...|.+++|+  +++|++++.||.|++|+++........+.. ......+.....+++++.|+.|
T Consensus       230 ~~~~~~~~~~-~~h-~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i  305 (355)
T d1nexb2         230 LENGELMYTL-QGH-TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQF  305 (355)
T ss_dssp             TTTCCEEEEE-CCC-SSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEE
T ss_pred             cccccccccc-ccc-cccccccccc--cceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEEeCCEE
Confidence            9999888776 578 8899999986  469999999999999999865432111110 0111112234455666779999


Q ss_pred             eeecccccccccC--CCCcccccC
Q 016257          352 SFWNFPVARNQHG--GPKIESILR  373 (392)
Q Consensus       352 ~~W~~~~~~~~~~--~p~~~~~~~  373 (392)
                      ++||+.+++.+..  ..+..+++.
T Consensus       306 ~vwd~~tg~~~~~~~~~~~~~V~~  329 (355)
T d1nexb2         306 NIYNLRSGKLVHANILKDADQIWS  329 (355)
T ss_dssp             EEEETTTCCBCCSCTTTTCSEEEE
T ss_pred             EEEECCCCCEEEEEecCCCCCEEE
Confidence            9999999886632  233344443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-34  Score=250.42  Aligned_cols=281  Identities=10%  Similarity=0.145  Sum_probs=210.9

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCe-EEEEEEeCCccceeeccccCCCCCC-CCCeEEEEecC--CCCEEEEEeCCCcEEEE
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGG-CKLFEVYGGATDINLLAKKMPPLQD-AGPQKCLSFSV--DGSRFAAGGVDGHLRIM  139 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~--~~~~l~~~~~dg~i~i~  139 (392)
                      +.+++++|+|+++.|++++.+.. ++.|+...........     ...| ...|++++|+|  ++.+|++|+.||+|++|
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~-----~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iW   92 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQ-----FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW   92 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEE-----ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEE-----EeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEe
Confidence            45788999999999998865542 4445433322111111     0123 46899999998  67899999999999999


Q ss_pred             eCCCCceee--------cccCCCCcEEEEEecCCCCeEEEEcC--CCcEEEEECCCCeeeEEEecCCCcceEEEEecCCC
Q 016257          140 HWPSLRIIL--------DEPKAHKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (392)
Q Consensus       140 d~~~~~~~~--------~~~~~~~~i~~i~~~~~~~~l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (392)
                      |+..++...        ....+.++|.+++|+++++++++++.  ++.+++|+.++++.+..+..|. ..+.+++|+|++
T Consensus        93 d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~  171 (325)
T d1pgua1          93 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS-QRINACHLKQSR  171 (325)
T ss_dssp             EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS-SCEEEEEECSSS
T ss_pred             eecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecc-cccccccccccc
Confidence            986544321        22345678999999999999887754  6789999999999988887654 479999999998


Q ss_pred             CcceEEEEEEeCCccEEEEEeCCCceeeeee---cccCCCcEEEEECCC-CCEEEEEeCCCcEEEEecCCceeeeeeecc
Q 016257          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINHWSKRL  285 (392)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  285 (392)
                      ...    +++++.|+.+++||.+..+.....   ..+...|++++|+|+ +.+|++++.|+.|++||+++++.+..+ ..
T Consensus       172 ~~~----~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l-~~  246 (325)
T d1pgua1         172 PMR----SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI-ED  246 (325)
T ss_dssp             SCE----EEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC-CB
T ss_pred             cce----EEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccc-cc
Confidence            752    577889999999999887765444   345678999999997 689999999999999999999988777 45


Q ss_pred             ccCcceEEEEEe---eCCCeEEEEeCCCeEEEEEeecCccccceeeee-----ee-eeeeeeceEEEEeeecceeeeecc
Q 016257          286 HLGTSIALVEFC---PTQRVVLTASKEWGAMITKLTVPADWKEWQIYS-----LL-LALFLASAVVFYIFFENSDSFWNF  356 (392)
Q Consensus       286 ~~~~~i~~~~~s---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~d~~i~~W~~  356 (392)
                      | ..++.++.|+   |+|++|++++.|+.|+||++...+..+.+....     .. .........+++++.|+.|++||+
T Consensus       247 ~-~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         247 D-QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             T-TBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             c-ccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            6 6666655555   689999999999999999998765544332111     01 111223457888899999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-34  Score=250.30  Aligned_cols=312  Identities=13%  Similarity=0.162  Sum_probs=227.5

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCC
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~   85 (392)
                      .|+|++|+.     .++++|+.      |+.|++|++.        ......++.+|.+.|++++|+|+ .+|++|+.|+
T Consensus        15 vitc~~~~~-----~~l~tgs~------Dg~i~vWd~~--------~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~   74 (355)
T d1nexb2          15 VITCLQFED-----NYVITGAD------DKMIRVYDSI--------NKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDR   74 (355)
T ss_dssp             CEEEEEEET-----TEEEEEET------TTEEEEEETT--------TTEEEEEEECCSSCEEEEEEETT-TEEEEEETTC
T ss_pred             cEEEEEECC-----CEEEEEeC------CCeEEEEECC--------CCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccc
Confidence            367887753     25666655      7789999876        45566789999999999999985 5899999999


Q ss_pred             eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccC-------------
Q 016257           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK-------------  152 (392)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------  152 (392)
                      .|++|+....+........     .+........+++++.++++++.|+.|++||+++.........             
T Consensus        75 ~i~iw~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (355)
T d1nexb2          75 TVRVWDIKKGCCTHVFEGH-----NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE  149 (355)
T ss_dssp             CEEEEETTTTEEEEEECCC-----SSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTT
T ss_pred             ccccccccccccccccccc-----cccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecccc
Confidence            9999998877654433221     1334456677888999999999999999999977554322111             


Q ss_pred             ----------CCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCC
Q 016257          153 ----------AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD  222 (392)
Q Consensus       153 ----------~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  222 (392)
                                +...+  ..+.+++++++++..|+.+++||+++++.+.....+.. .+.++.|+|++..     +++++.
T Consensus       150 ~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~  221 (355)
T d1nexb2         150 NPYFVGVLRGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKR-----CISASM  221 (355)
T ss_dssp             CTTEEEEEECCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTTE-----EEEEET
T ss_pred             ccceeeeeeeccccc--cccccccceeeeecccceeeeeecccccceeeeecccc-cccccccccccee-----eecccc
Confidence                      11112  23456788999999999999999999988887765544 6899999999997     788999


Q ss_pred             ccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEE-EEeeCCC
Q 016257          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALV-EFCPTQR  301 (392)
Q Consensus       223 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~  301 (392)
                      |+.|++||++++..+..+..|...|.++++++  ++|++++.||.|++||+++.+....   .| ...+.++ .++++++
T Consensus       222 d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~---~~-~~~~~~~~~~~~~~~  295 (355)
T d1nexb2         222 DTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFS---YH-HTNLSAITTFYVSDN  295 (355)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEE---EE-CTTCCCCCEEEECSS
T ss_pred             cceEEeeecccccccccccccccccccccccc--ceeeeeecccccccccccccceecc---cc-cCCceEEEEEcCCCC
Confidence            99999999999999999999999999999874  6999999999999999998775543   34 3444444 5677777


Q ss_pred             eEEEEeCCCeEEEEEeecCccccce---eeeeeeeeeeeeceEEEEeeecceeeeeccc
Q 016257          302 VVLTASKEWGAMITKLTVPADWKEW---QIYSLLLALFLASAVVFYIFFENSDSFWNFP  357 (392)
Q Consensus       302 ~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~  357 (392)
                      +|++| .||.|++|+++.++.....   +........+.....+++++.||++++|.+.
T Consensus       296 ~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~d  353 (355)
T d1nexb2         296 ILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD  353 (355)
T ss_dssp             EEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTEEEEEEESSSCEEEEEEE
T ss_pred             EEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCCeEEEEEECCCcEEEEEEe
Confidence            66665 5889999999866543211   0000111112233345566789987776543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-32  Score=233.61  Aligned_cols=277  Identities=15%  Similarity=0.154  Sum_probs=204.7

Q ss_pred             ceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC
Q 016257           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (392)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (392)
                      .....|+||.+.|.+ +++++|++||+|+.||+|+|||+.+++....+.       .|.+.|.+++|+++  +|++++.|
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~-------~h~~~V~~v~~~~~--~l~s~s~D   76 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-------GHTGGVWSSQMRDN--IIISGSTD   76 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECC-------CCSSCEEEEEEETT--EEEEEETT
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEe-------CCCCCEEEEEeCCC--ccccceec
Confidence            344678999999865 466789999999999999999998887654442       37889999999875  99999999


Q ss_pred             CcEEEEeCCCCceeecccCCCCcEE--------------------------------------EEEecCCCCeEEEEcCC
Q 016257          134 GHLRIMHWPSLRIILDEPKAHKSVL--------------------------------------DMDFSLDSEFLATTSTD  175 (392)
Q Consensus       134 g~i~i~d~~~~~~~~~~~~~~~~i~--------------------------------------~i~~~~~~~~l~~~~~d  175 (392)
                      +.+++|+................+.                                      .....+....+++++.|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  156 (342)
T d2ovrb2          77 RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD  156 (342)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETT
T ss_pred             ccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCC
Confidence            9999999876544322221111111                                      11223345567888899


Q ss_pred             CcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCC
Q 016257          176 GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD  255 (392)
Q Consensus       176 ~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~  255 (392)
                      +.+++||.+..+.+..+..+..   ....+.+++..     +++++.|+.|++||++.++.+.....|...+.++++++ 
T Consensus       157 ~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~-----l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-  227 (342)
T d2ovrb2         157 FMVKVWDPETETCLHTLQGHTN---RVYSLQFDGIH-----VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-  227 (342)
T ss_dssp             SCEEEEEGGGTEEEEEECCCSS---CEEEEEECSSE-----EEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET-
T ss_pred             CeEEEeecccceeeEEEcCccc---ccccccCCCCE-----EEEEeCCCeEEEeecccceeeeEecccccceeEEecCC-
Confidence            9999999988888887765533   34445556665     78999999999999999999999999998998887764 


Q ss_pred             CCEEEEEeCCCcEEEEecCCceeeeeeec--cccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccce-------
Q 016257          256 GKYLAMGSKDGDICVVDVKKMEINHWSKR--LHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEW-------  326 (392)
Q Consensus       256 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-------  326 (392)
                       ++|++++.|+.|++||+...+....+..  .| ...+.++.+  +++++++|+.||.|++|+++.++..+..       
T Consensus       228 -~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~  303 (342)
T d2ovrb2         228 -NILVSGNADSTVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG  303 (342)
T ss_dssp             -TEEEEEETTSCEEEEETTTCCEEEEECSTTSC-SSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGG
T ss_pred             -CEEEEEcCCCEEEEEeccccccccccccccee-eeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCC
Confidence             6999999999999999998877665532  23 455666655  5679999999999999999866543322       


Q ss_pred             ------eeeeeeeeeeeeceEEEEeeecce----eeeecccc
Q 016257          327 ------QIYSLLLALFLASAVVFYIFFENS----DSFWNFPV  358 (392)
Q Consensus       327 ------~~~~~~~~~~~~~~~~~~~~~d~~----i~~W~~~~  358 (392)
                            .+.+.+     ....+++++.||+    +++||++.
T Consensus       304 ~~~~v~~v~~s~-----~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         304 SGGVVWRIRASN-----TKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             GTCEEEEEEECS-----SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCCEEEEEECC-----CCCEEEEEeCCCCCeeEEEEEeCCC
Confidence                  222222     2235556666764    99999863

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.1e-32  Score=229.27  Aligned_cols=262  Identities=13%  Similarity=0.071  Sum_probs=207.1

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ..+|+|++|+|       +++|+.      |+.|++|+...             ...+|...|.++++++++ .+++++.
T Consensus        13 ~~~I~~l~~s~-------l~sgs~------Dg~v~~Wd~~~-------------~~~~h~~~V~~~~~~~~~-~~~s~s~   65 (287)
T d1pgua2          13 NKGITALTVNP-------LISGSY------DGRIMEWSSSS-------------MHQDHSNLIVSLDNSKAQ-EYSSISW   65 (287)
T ss_dssp             SSCEEEEETTT-------TEEEET------TSCEEETTTTE-------------EECCCCSCEEEEECCSTT-CCEEEET
T ss_pred             CCceEEEEECc-------EEEEeC------CCeEEEEECCC-------------CCCCCCCCEEEEEecCCC-eEEEEee
Confidence            46899999987       444444      77788986541             245799999999998765 6788999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~  163 (392)
                      |+++++|++...+              ....+..+.+++++..++++ .++.+.+|+..+++........ ..+  .+++
T Consensus        66 D~~v~~w~~~~~~--------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~  127 (287)
T d1pgua2          66 DDTLKVNGITKHE--------------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLN-SPG--SAVS  127 (287)
T ss_dssp             TTEEEETTEEEEE--------------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECS-SCE--EEEE
T ss_pred             ccccccccccccc--------------cccceeeeeeccCCceEEEe-ecccceeeeccceeeeeecccc-cee--eeee
Confidence            9999999987543              22456788999988766665 5667889999888876554332 333  4567


Q ss_pred             CCCCeEEEEcCCC-cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeee-eec
Q 016257          164 LDSEFLATTSTDG-SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG-HKR  241 (392)
Q Consensus       164 ~~~~~l~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~-~~~  241 (392)
                      +++..+++++.++ .+++|++...+....+...+...+.+++|+|++.+     +++++.|+.|++||+.+++... .+.
T Consensus       128 ~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-----l~~g~~dg~i~i~d~~~~~~~~~~~~  202 (287)
T d1pgua2         128 LSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY-----IAAGDVMGKILLYDLQSREVKTSRWA  202 (287)
T ss_dssp             ECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEECCSC
T ss_pred             ccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccc-----cccccccccccceeeccccccccccc
Confidence            7778888777765 79999998777766666666778999999999997     7899999999999999887654 456


Q ss_pred             ccCCCcEEEEECCC----------CCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCe
Q 016257          242 LLRKPASVLSISLD----------GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWG  311 (392)
Q Consensus       242 ~~~~~v~~~~~s~~----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  311 (392)
                      .|...|.+++|+|+          +.+|++|+.|++|++||++++........+| ...|++++|+|++ .|++++.|+.
T Consensus       203 ~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h-~~~V~~v~~~~~~-~l~s~g~D~~  280 (287)
T d1pgua2         203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH-KDGVNNLLWETPS-TLVSSGADAC  280 (287)
T ss_dssp             CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS-TTCEEEEEEEETT-EEEEEETTSC
T ss_pred             ccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC-CCCeEEEEECCCC-EEEEEECCCe
Confidence            78899999999874          4689999999999999998754444444689 8999999999986 5889999999


Q ss_pred             EEEEEe
Q 016257          312 AMITKL  317 (392)
Q Consensus       312 i~iw~~  317 (392)
                      |++|++
T Consensus       281 v~iW~i  286 (287)
T d1pgua2         281 IKRWNV  286 (287)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.5e-32  Score=240.10  Aligned_cols=319  Identities=13%  Similarity=0.097  Sum_probs=220.5

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEE------cC-CCC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV------NP-SGD   76 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~------sp-~~~   76 (392)
                      .+.|++++++++     .+++++.      |+.|++|+.........  .........|...+..+..      ++ ++.
T Consensus        14 ~~~I~~v~~~~~-----~l~S~S~------D~~iriWd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (393)
T d1sq9a_          14 DADIFSVSACNS-----FTVSCSG------DGYLKVWDNKLLDNENP--KDKSYSHFVHKSGLHHVDVLQAIERDAFELC   80 (393)
T ss_dssp             SSCEEEEEECSS-----EEEEEET------TSEEEEEESBCCTTCCG--GGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred             cCccEEEEEeCC-----EEEEEEC------CCeEEEEECCCCCCCcc--cceeEeeeeccCCceEeeeEeeeccCCCCCc
Confidence            468999998763     3555444      77899998764433221  1122223345544433322      11 234


Q ss_pred             eEEEEeCCCeEEEEEEeCCccceeeccccC---CCCCCCCCeEEEEecCC-----CCEEEEEeCCCcEEEEeCCCCce--
Q 016257           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKM---PPLQDAGPQKCLSFSVD-----GSRFAAGGVDGHLRIMHWPSLRI--  146 (392)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~i~d~~~~~~--  146 (392)
                      .+++++.||.|++|++..............   ....+...+..++|.++     +.++++++.||.+++|++.....  
T Consensus        81 ~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~  160 (393)
T d1sq9a_          81 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES  160 (393)
T ss_dssp             EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred             EEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccc
Confidence            678999999999999987654333322111   11224456778888775     45789999999999999743211  


Q ss_pred             ----------------eecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec-----CCCcceEEEEe
Q 016257          147 ----------------ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-----NSDEKIELCRF  205 (392)
Q Consensus       147 ----------------~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-----~~~~~v~~~~~  205 (392)
                                      ......+...+.+++|+|++ +|++|+.|++|++||+++++++..+..     .|..+|.+++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~  239 (393)
T d1sq9a_         161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  239 (393)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             ceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccc
Confidence                            11112223458899999987 899999999999999999988776653     24568999999


Q ss_pred             cCCCCcceEEEEEEeCCcc---EEEEEeCCCceeeeeec-------------ccCCCcEEEEECCCCCEEEEEeCCCcEE
Q 016257          206 SKDGTKPFLFCTVQRGDKA---LLAVYDISTWNKIGHKR-------------LLRKPASVLSISLDGKYLAMGSKDGDIC  269 (392)
Q Consensus       206 ~~~~~~~~~~~~~~~~~d~---~i~v~d~~~~~~~~~~~-------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~  269 (392)
                      +|+++.     +++++.|+   .|++||+++++.+..+.             +|...|++++|+|++++|++|+.|++|+
T Consensus       240 spdg~~-----l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~  314 (393)
T d1sq9a_         240 SPQGSL-----LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR  314 (393)
T ss_dssp             CSSTTE-----EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             ccccce-----eeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEE
Confidence            999997     78887775   69999999887766553             6888999999999999999999999999


Q ss_pred             EEecCCceeeeeeeccccCcceE----EEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeeeeeeeeeeeeceEEEEe
Q 016257          270 VVDVKKMEINHWSKRLHLGTSIA----LVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLALFLASAVVFYI  345 (392)
Q Consensus       270 iwd~~~~~~~~~~~~~~~~~~i~----~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (392)
                      +||+++++++..+ .+| ...|.    .++|+|++..+++++   ...++.+..........         .....+.++
T Consensus       315 vWd~~~g~~~~~l-~gH-~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---------~~~~~~~~~  380 (393)
T d1sq9a_         315 FWDVKTKERITTL-NMH-CDDIEIEEDILAVDEHGDSLAEPG---VFDVKFLKKGWRSGMGA---------DLNESLCCV  380 (393)
T ss_dssp             EEETTTTEEEEEE-ECC-GGGCSSGGGCCCBCTTSCBCSSCC---EEEEEEECTTTSBSTTC---------TTSCEEEEE
T ss_pred             EEECCCCCEEEEE-CCc-CCcccCCccEEEECCCCCEEEEcc---cceEEECccCceecccc---------CCCCEEEEE
Confidence            9999999998887 588 77665    588999998876554   22233222221110000         112345677


Q ss_pred             eecceeeeec
Q 016257          346 FFENSDSFWN  355 (392)
Q Consensus       346 ~~d~~i~~W~  355 (392)
                      +.|+.||+|.
T Consensus       381 ~~d~~ir~~~  390 (393)
T d1sq9a_         381 CLDRSIRWFR  390 (393)
T ss_dssp             ETTTEEEEEE
T ss_pred             EcCCeEEEEe
Confidence            7799999986

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-31  Score=232.96  Aligned_cols=280  Identities=16%  Similarity=0.187  Sum_probs=208.8

Q ss_pred             ee-eeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC
Q 016257            6 TV-TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (392)
Q Consensus         6 ~v-~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d   84 (392)
                      +| .|++|  +++   ++++|+.      |+.|++|++.        +......+.+|.+.|.+++|+|+  +|++++.|
T Consensus        18 ~V~s~~~~--~g~---~l~sgs~------Dg~i~vWd~~--------~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D   76 (342)
T d2ovrb2          18 HVITCLQF--CGN---RIVSGSD------DNTLKVWSAV--------TGKCLRTLVGHTGGVWSSQMRDN--IIISGSTD   76 (342)
T ss_dssp             SCEEEEEE--ETT---EEEEEET------TSCEEEEETT--------TCCEEEECCCCSSCEEEEEEETT--EEEEEETT
T ss_pred             ceEEEEEE--CCC---EEEEEeC------CCeEEEEECC--------CCCEEEEEeCCCCCEEEEEeCCC--ccccceec
Confidence            44 45555  442   4666554      7789999876        44556778999999999999875  99999999


Q ss_pred             CeEEEEEEeCCccceeeccccCC-----------------------CCC--------CCCCeEEEEecCCCCEEEEEeCC
Q 016257           85 GGCKLFEVYGGATDINLLAKKMP-----------------------PLQ--------DAGPQKCLSFSVDGSRFAAGGVD  133 (392)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~-----------------------~~~--------~~~~v~~~~~s~~~~~l~~~~~d  133 (392)
                      +.+++|+................                       ...        ...........+....+++++.|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  156 (342)
T d2ovrb2          77 RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD  156 (342)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETT
T ss_pred             ccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCC
Confidence            99999997665432111100000                       000        00111122333455678889999


Q ss_pred             CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcce
Q 016257          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (392)
Q Consensus       134 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (392)
                      +.+++||.+..+.+..+..+...+..+  ++++.++++++.||.|++||++.++.+..+..+.. .+.++.++++  .  
T Consensus       157 ~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~--~--  229 (342)
T d2ovrb2         157 FMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS-LTSGMELKDN--I--  229 (342)
T ss_dssp             SCEEEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEETTSCEEEEETTTCCEEEEECCCCS-CEEEEEEETT--E--
T ss_pred             CeEEEeecccceeeEEEcCcccccccc--cCCCCEEEEEeCCCeEEEeecccceeeeEeccccc-ceeEEecCCC--E--
Confidence            999999999888887777776666554  44688999999999999999999999888876654 6888877653  4  


Q ss_pred             EEEEEEeCCccEEEEEeCCCceeeeeecc---cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeee----ccc
Q 016257          214 LFCTVQRGDKALLAVYDISTWNKIGHKRL---LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK----RLH  286 (392)
Q Consensus       214 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~  286 (392)
                         +++++.|+.|++||+...+....+..   |...+.++.++  ++++++|+.||.|++||+++++.++.+.    .+|
T Consensus       230 ---l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~  304 (342)
T d2ovrb2         230 ---LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS  304 (342)
T ss_dssp             ---EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG
T ss_pred             ---EEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCC
Confidence               78999999999999998877666554   34556666654  5699999999999999999998877653    245


Q ss_pred             cCcceEEEEEeeCCCeEEEEeCCCe----EEEEEeec
Q 016257          287 LGTSIALVEFCPTQRVVLTASKEWG----AMITKLTV  319 (392)
Q Consensus       287 ~~~~i~~~~~s~~~~~l~~~~~dg~----i~iw~~~~  319 (392)
                       ...|++++|+|++.+|++|+.||+    |++||++.
T Consensus       305 -~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         305 -GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             -TCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             -CCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence             678999999999999999999985    99999863

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.5e-32  Score=228.81  Aligned_cols=269  Identities=16%  Similarity=0.122  Sum_probs=205.0

Q ss_pred             ceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC
Q 016257           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (392)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  133 (392)
                      .+..+++||.++|++++|+|    |++|+.||+|++||+.+..            ..|...|.++++++++ .+++++.|
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~------------~~h~~~V~~~~~~~~~-~~~s~s~D   66 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH------------QDHSNLIVSLDNSKAQ-EYSSISWD   66 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE------------CCCCSCEEEEECCSTT-CCEEEETT
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC------------CCCCCCEEEEEecCCC-eEEEEeec
Confidence            34567999999999999987    9999999999999975432            1377899999998765 67899999


Q ss_pred             CcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcce
Q 016257          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (392)
Q Consensus       134 g~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (392)
                      +++++|++...+       ....+..+.+++++..+++++ ++.+.+|+..+++.+..+....  .  ..++++++... 
T Consensus        67 ~~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~-  133 (287)
T d1pgua2          67 DTLKVNGITKHE-------FGSQPKVASANNDGFTAVLTN-DDDLLILQSFTGDIIKSVRLNS--P--GSAVSLSQNYV-  133 (287)
T ss_dssp             TEEEETTEEEEE-------CSSCEEEEEECSSSEEEEEET-TSEEEEEETTTCCEEEEEECSS--C--EEEEEECSSEE-
T ss_pred             cccccccccccc-------cccceeeeeeccCCceEEEee-cccceeeeccceeeeeeccccc--e--eeeeeccCcce-
Confidence            999999875421       233577888999887777665 5678999999988888776432  2  34566777651 


Q ss_pred             EEEEEEeCCccEEEEEeCCCceeeeeec-ccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceE
Q 016257          214 LFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA  292 (392)
Q Consensus       214 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~  292 (392)
                         ++.+..++.+++|++...+...... .+...+++++|+|++.+|++|+.||.|++||+.+++........| ...|.
T Consensus       134 ---~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h-~~~v~  209 (287)
T d1pgua2         134 ---AVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR-TSKIN  209 (287)
T ss_dssp             ---EEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC-SSCEE
T ss_pred             ---eeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccccc-ccccc
Confidence               3444555689999998766554443 466789999999999999999999999999999998776655788 88999


Q ss_pred             EEEEeeC----------CCeEEEEeCCCeEEEEEeecCcccc-ce--eeeeeeeeeeeeceEEEEeeecceeeeecc
Q 016257          293 LVEFCPT----------QRVVLTASKEWGAMITKLTVPADWK-EW--QIYSLLLALFLASAVVFYIFFENSDSFWNF  356 (392)
Q Consensus       293 ~~~~s~~----------~~~l~~~~~dg~i~iw~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~  356 (392)
                      +++|+|+          +.+|++|+.|+.|++|+++.+.... ..  +........+.....+++++.|+.|++|++
T Consensus       210 ~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             eeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence            9999874          4689999999999999997643321 11  000111112234556888999999999986

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.3e-31  Score=228.91  Aligned_cols=291  Identities=11%  Similarity=0.097  Sum_probs=211.8

Q ss_pred             EEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCC-CCEEEEEeCCC
Q 016257           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDG  134 (392)
Q Consensus        56 ~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg  134 (392)
                      ....++|++.|++++|+|++++||+|+.||+|+|||+........+...    ..|..+|.+++|+|+ +.+|++|+.|+
T Consensus         4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~----~~h~~~V~~v~f~~~~~~~l~sg~~d~   79 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS----LRYKHPLLCCNFIDNTDLQIYVGTVQG   79 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE----EECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred             EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEe----cCCCCCEEEEEEeCCCCCEEEEccccc
Confidence            3456889999999999999999999999999999999887654433321    137889999999986 55899999999


Q ss_pred             cEEEEeCCCCceeecccCCCC-cEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec----C-CCcceEEEEecCC
Q 016257          135 HLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR----N-SDEKIELCRFSKD  208 (392)
Q Consensus       135 ~i~i~d~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~----~-~~~~v~~~~~~~~  208 (392)
                      .|++|++...........+.. ......+.++...+++++.++.+++||++.+........    + .........+.+.
T Consensus        80 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (342)
T d1yfqa_          80 EILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN  159 (342)
T ss_dssp             CEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred             ceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeecc
Confidence            999999988776665555544 344555677888999999999999999875543332221    1 1223455667777


Q ss_pred             CCcceEEEEEEeCCccEEEEEeCCCceeeee---ecccCCCcEEEEECC-CCCEEEEEeCCCcEEEEecCCceeeee---
Q 016257          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGH---KRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHW---  281 (392)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~---~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~---  281 (392)
                      +..     +++++.|+.|++||++..+....   .........+..+.+ ++..+++++.||.+.+|+.........   
T Consensus       160 ~~~-----~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~  234 (342)
T d1yfqa_         160 SSR-----LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK  234 (342)
T ss_dssp             SSE-----EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred             CCc-----eeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccc
Confidence            776     78889999999999987654322   223344555655554 678999999999999998765322110   


Q ss_pred             -----------eeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceee--eeeeeeeeeeceEEEEeeec
Q 016257          282 -----------SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQI--YSLLLALFLASAVVFYIFFE  348 (392)
Q Consensus       282 -----------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d  348 (392)
                                 ....| ...+++++|+|++++|++|+.||.|++||+...+.......  ......+......+++++.|
T Consensus       235 ~~~~~~~~~~~~~~~~-~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sd  313 (342)
T d1yfqa_         235 RFAFRCHRLNLKDTNL-AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSD  313 (342)
T ss_dssp             CEEEECCCCCTTCCSS-CCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEEC
T ss_pred             cceeeeeeeccCCCcc-cccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcC
Confidence                       01234 56799999999999999999999999999987654432211  11223333455677777888


Q ss_pred             ceeeeecc
Q 016257          349 NSDSFWNF  356 (392)
Q Consensus       349 ~~i~~W~~  356 (392)
                      +.+++|..
T Consensus       314 d~~~~~~~  321 (342)
T d1yfqa_         314 DTFKTNAA  321 (342)
T ss_dssp             THHHHCSS
T ss_pred             CcEEEeee
Confidence            88888875

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-30  Score=216.20  Aligned_cols=272  Identities=13%  Similarity=0.172  Sum_probs=206.2

Q ss_pred             EeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEE
Q 016257           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (392)
Q Consensus        58 ~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  137 (392)
                      ...+|...|+|++|  |+++||+|+.||+|+|||+.+++....+.       .|.+.|.+++|  ++++|++|+.|+.|+
T Consensus        10 ~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~-------~H~~~V~~v~~--~~~~l~s~s~D~~i~   78 (293)
T d1p22a2          10 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT-------GHTGSVLCLQY--DERVIITGSSDSTVR   78 (293)
T ss_dssp             CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEEC-------CCSSCEEEEEC--CSSEEEEEETTSCEE
T ss_pred             ccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEe-------cCCCCEeeeec--ccceeeccccccccc
Confidence            35678889998765  78999999999999999999887665543       37889999987  577999999999999


Q ss_pred             EEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEE--ecCCCcceEEEEecCCCCcceEE
Q 016257          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL--TRNSDEKIELCRFSKDGTKPFLF  215 (392)
Q Consensus       138 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~  215 (392)
                      +|++..+.............  ..+.+....++++..++.+.+|+..........  ...+...+..+.+.+..      
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------  150 (293)
T d1p22a2          79 VWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY------  150 (293)
T ss_dssp             EEESSSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTE------
T ss_pred             cccccccccccccccccccc--ccccccccceeecccccceeEeeccccccccccccccccccccccceecccc------
Confidence            99999888766555444333  334556678999999999999999876543222  23344467777766542      


Q ss_pred             EEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEE
Q 016257          216 CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVE  295 (392)
Q Consensus       216 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  295 (392)
                       +.+++.|+.+++||+++++.+..+..+...+..+.++  +.++++++.||.|++||+++.+.+... ..+ ...+..  
T Consensus       151 -~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~-~~~v~~--  223 (293)
T d1p22a2         151 -IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL-EGH-EELVRC--  223 (293)
T ss_dssp             -EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE-CCC-SSCEEE--
T ss_pred             -cccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeee-ccc-ceeeee--
Confidence             5778889999999999999988888888888877765  568999999999999999998887766 455 566654  


Q ss_pred             EeeCCCeEEEEeCCCeEEEEEeecCccccc---e---eee----eeeeeeeeeceEEEEeeecceeeeec
Q 016257          296 FCPTQRVVLTASKEWGAMITKLTVPADWKE---W---QIY----SLLLALFLASAVVFYIFFENSDSFWN  355 (392)
Q Consensus       296 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~---~---~~~----~~~~~~~~~~~~~~~~~~d~~i~~W~  355 (392)
                      +++++.+|++++.||.|++|++........   .   ...    ..+.........+++++.|++|++||
T Consensus       224 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred             ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence            566888999999999999999864322110   0   000    01122233456788889999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=9.9e-30  Score=215.59  Aligned_cols=267  Identities=14%  Similarity=0.174  Sum_probs=207.9

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ...|+|++|+  +   .++++|+.      |+.|++|+++        .......+.+|.+.|++++|  ++++|++|+.
T Consensus        15 ~~~V~c~~~d--~---~~l~sgs~------Dg~i~vWd~~--------~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~   73 (293)
T d1p22a2          15 SKGVYCLQYD--D---QKIVSGLR------DNTIKIWDKN--------TLECKRILTGHTGSVLCLQY--DERVIITGSS   73 (293)
T ss_dssp             CCCEEEEECC--S---SEEEEEES------SSCEEEEESS--------SCCEEEEECCCSSCEEEEEC--CSSEEEEEET
T ss_pred             CCCEEEEEEc--C---CEEEEEeC------CCeEEEEECC--------CCcEEEEEecCCCCEeeeec--ccceeecccc
Confidence            4568898874  4   34666655      7789999886        45566789999999999987  5679999999


Q ss_pred             CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCce---eecccCCCCcEEEE
Q 016257           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAHKSVLDM  160 (392)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~i  160 (392)
                      |+.|++|++..+........         .......+.+....++++..++.+.+|+..+...   ......+...+..+
T Consensus        74 D~~i~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  144 (293)
T d1p22a2          74 DSTVRVWDVNTGEMLNTLIH---------HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV  144 (293)
T ss_dssp             TSCEEEEESSSCCEEEEECC---------CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEE
T ss_pred             cccccccccccccccccccc---------cccccccccccccceeecccccceeEeeccccccccccccccccccccccc
Confidence            99999999988765443322         1223344555667899999999999999876553   33344556678777


Q ss_pred             EecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeee
Q 016257          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (392)
Q Consensus       161 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~  240 (392)
                      .+.+  ..+++++.|+.+++||+++++.+..+..+.. .+..+.+++  ..     +++++.|+.|++||+++.+.+...
T Consensus       145 ~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~--~~-----l~~~~~dg~i~i~d~~~~~~~~~~  214 (293)
T d1p22a2         145 DFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKR-GIACLQYRD--RL-----VVSGSSDNTIRLWDIECGACLRVL  214 (293)
T ss_dssp             EEET--TEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEET--TE-----EEEEETTSCEEEEETTTCCEEEEE
T ss_pred             eecc--cccccccCCCceeeecCCCCcEEEEEccccc-ccccccCCC--Ce-----EEEecCCCEEEEEecccceeeeee
Confidence            7764  5788899999999999999999888876544 577776654  33     788999999999999999998888


Q ss_pred             cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCce---------eeeeeeccccCcceEEEEEeeCCCeEEEEeCCCe
Q 016257          241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME---------INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWG  311 (392)
Q Consensus       241 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  311 (392)
                      ..+...+..  +++++.+|++|+.||.|++||+.+..         ....+ .+| .+.|++++|  ++++|++++.||+
T Consensus       215 ~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~H-~~~V~~v~~--d~~~l~s~s~Dg~  288 (293)
T d1p22a2         215 EGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-VEH-SGRVFRLQF--DEFQIVSSSHDDT  288 (293)
T ss_dssp             CCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-CCC-SSCCCCEEE--CSSCEEECCSSSE
T ss_pred             cccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEe-cCC-CCCEEEEEE--cCCEEEEEecCCE
Confidence            888777765  56778899999999999999986432         22333 578 889999998  5678999999999


Q ss_pred             EEEEE
Q 016257          312 AMITK  316 (392)
Q Consensus       312 i~iw~  316 (392)
                      |++||
T Consensus       289 i~iWD  293 (293)
T d1p22a2         289 ILIWD  293 (293)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.1e-30  Score=229.21  Aligned_cols=256  Identities=11%  Similarity=0.055  Sum_probs=185.2

Q ss_pred             EEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEE------EEecC-CCCEEEE
Q 016257           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC------LSFSV-DGSRFAA  129 (392)
Q Consensus        57 ~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~~s~-~~~~l~~  129 (392)
                      ...++|.+.|+++++++  +++++++.|++|+|||....+........ .....|...+..      +..+. ++.++++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKS-YSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGE-EEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCccccee-EeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            34579999999999865  69999999999999998765432111100 000012223222      22222 3456789


Q ss_pred             EeCCCcEEEEeCCCCceeec----------ccCCCCcEEEEEecCC-----CCeEEEEcCCCcEEEEECCCCee------
Q 016257          130 GGVDGHLRIMHWPSLRIILD----------EPKAHKSVLDMDFSLD-----SEFLATTSTDGSARIWKTEDGVA------  188 (392)
Q Consensus       130 ~~~dg~i~i~d~~~~~~~~~----------~~~~~~~i~~i~~~~~-----~~~l~~~~~d~~i~vwd~~~~~~------  188 (392)
                      ++.||.|++|++........          ...+...+..++|.++     +.++++++.||++++|++.....      
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~  164 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  164 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence            99999999999754332111          1112335778888775     45789999999999999753210      


Q ss_pred             --------e-EEE--ecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeee------cccCCCcEEEE
Q 016257          189 --------W-TFL--TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK------RLLRKPASVLS  251 (392)
Q Consensus       189 --------~-~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~------~~~~~~v~~~~  251 (392)
                              . ...  ...+...+.+++|+|++.      +++++.|+.|++||+++++++..+      ..|..+|++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~------lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~  238 (393)
T d1sq9a_         165 LNWSPTLELQGTVESPMTPSQFATSVDISERGL------IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK  238 (393)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTSE------EEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred             eeeccceecccceecccCCCCcEEEEEECCCCE------EEEEeCCCcEEEEeecccccccccccccccccccceEEEcc
Confidence                    0 111  112234588999999983      789999999999999988775433      45788999999


Q ss_pred             ECCCCCEEEEEeCCCc---EEEEecCCceeeeeee------------ccccCcceEEEEEeeCCCeEEEEeCCCeEEEEE
Q 016257          252 ISLDGKYLAMGSKDGD---ICVVDVKKMEINHWSK------------RLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (392)
Q Consensus       252 ~s~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~------------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~  316 (392)
                      |+|+|++|++|+.|++   |++||+++++.+..+.            .+| ...|++++|+|++++|++++.|++|++||
T Consensus       239 ~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH-~~~V~~l~fspd~~~l~S~s~D~~v~vWd  317 (393)
T d1sq9a_         239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSGETLCSAGWDGKLRFWD  317 (393)
T ss_dssp             ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB-SSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             cccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecc-cCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence            9999999999999875   8999999987766542            368 88999999999999999999999999999


Q ss_pred             eecCcc
Q 016257          317 LTVPAD  322 (392)
Q Consensus       317 ~~~~~~  322 (392)
                      +..++.
T Consensus       318 ~~~g~~  323 (393)
T d1sq9a_         318 VKTKER  323 (393)
T ss_dssp             TTTTEE
T ss_pred             CCCCCE
Confidence            987644

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.5e-30  Score=223.08  Aligned_cols=287  Identities=10%  Similarity=0.024  Sum_probs=206.8

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCC-CeEEEEe
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCST   82 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~~~~   82 (392)
                      ...|++++|+|++.   ++++|+.      |++|++|+++.....     .......+|.++|.+++|+|++ .+|++|+
T Consensus        11 ~d~I~~l~fsp~~~---~L~s~s~------Dg~v~iwd~~~~~~~-----~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~   76 (342)
T d1yfqa_          11 KDYISDIKIIPSKS---LLLITSW------DGSLTVYKFDIQAKN-----VDLLQSLRYKHPLLCCNFIDNTDLQIYVGT   76 (342)
T ss_dssp             SSCEEEEEEEGGGT---EEEEEET------TSEEEEEEEETTTTE-----EEEEEEEECSSCEEEEEEEESSSEEEEEEE
T ss_pred             CCCEEEEEEeCCCC---EEEEEEC------CCeEEEEEccCCCcc-----eEEEEecCCCCCEEEEEEeCCCCCEEEEcc
Confidence            34599999999874   4665544      788999999754321     1222334699999999999865 5789999


Q ss_pred             CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee----ecccCC--CCc
Q 016257           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII----LDEPKA--HKS  156 (392)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~--~~~  156 (392)
                      .|+.|++|++...........      .+........+.++...+++++.++.+++||+++....    .....+  ...
T Consensus        77 ~d~~v~~w~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~  150 (342)
T d1yfqa_          77 VQGEILKVDLIGSPSFQALTN------NEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK  150 (342)
T ss_dssp             TTSCEEEECSSSSSSEEECBS------CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSC
T ss_pred             cccceeeeecccccccccccc------cccccccccccccccccccccccccccceeeccccccceeeecccccccccce
Confidence            999999999987764433322      12334455666778889999999999999998643321    111111  124


Q ss_pred             EEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEE--ecCCCcceEEEEecCC-CCcceEEEEEEeCCccEEEEEeCCC
Q 016257          157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL--TRNSDEKIELCRFSKD-GTKPFLFCTVQRGDKALLAVYDIST  233 (392)
Q Consensus       157 i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~d~~i~v~d~~~  233 (392)
                      .....+.+.+..+++++.|+.|++||++..+.....  .........+..+.+. +..     +++++.++.+.+|+...
T Consensus       151 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~s~dg~~~v~~~~~  225 (342)
T d1yfqa_         151 NKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG-----YACSSIDGRVAVEFFDD  225 (342)
T ss_dssp             CCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCE-----EEEEETTSEEEEEECCT
T ss_pred             eeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCE-----EEeecCCCeEEEEEecC
Confidence            456677888899999999999999999876543222  2223334556666554 443     68888999999999764


Q ss_pred             ceee---------------eeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEee
Q 016257          234 WNKI---------------GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (392)
Q Consensus       234 ~~~~---------------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  298 (392)
                      ....               .....+...+++++|+|++++|++|+.||.|++||+++++.+..+...|   .+..++|+|
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~---~~~~~~~s~  302 (342)
T d1yfqa_         226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN---EDSVVKIAC  302 (342)
T ss_dssp             TCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS---SSEEEEEEE
T ss_pred             CcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC---CCEEEEEEe
Confidence            3221               1122445678999999999999999999999999999999887764433   566788899


Q ss_pred             CCCeEEEEeCCCeEEEEEee
Q 016257          299 TQRVVLTASKEWGAMITKLT  318 (392)
Q Consensus       299 ~~~~l~~~~~dg~i~iw~~~  318 (392)
                      ++++|++++.|+.+++|...
T Consensus       303 ~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         303 SDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             CSSEEEEEEECTHHHHCSSS
T ss_pred             CCCEEEEEEcCCcEEEeeee
Confidence            99999999999888887553

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=6.3e-30  Score=223.97  Aligned_cols=242  Identities=11%  Similarity=0.040  Sum_probs=184.3

Q ss_pred             CCCCCeeEEEEcCCCCeEEEEeCCC--eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEE
Q 016257           61 ESEGDPMTIAVNPSGDDFVCSTTNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (392)
Q Consensus        61 ~h~~~v~~~~~sp~~~~l~~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  138 (392)
                      +|...|.+++|+|||++|++++.+.  .|++||..+++.. .+       ..|...+.+++|+|++++|++++.++.+++
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~-------~~~~~~v~~~~~spdg~~l~~~~~~~~~~~  111 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KF-------EENLGNVFAMGVDRNGKFAVVANDRFEIMT  111 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-EC-------CCCCCSEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-Ee-------eCCCceEEeeeecccccccceecccccccc
Confidence            6899999999999999998776553  7899999876532 11       237789999999999999999999999999


Q ss_pred             EeCCCCceeecccCCCCcEEEEEecCCCCeEEEEc----------CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCC
Q 016257          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS----------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD  208 (392)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (392)
                      |++.+++.......+...+.+++|+|+|++|+.+.          .++.+++||+.+++......  +...+..++|+|+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--~~~~~~~~~~spd  189 (360)
T d1k32a3         112 VDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT--ENSHDYAPAFDAD  189 (360)
T ss_dssp             EETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC--SSSBEEEEEECTT
T ss_pred             ccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecc--cccccccccccCC
Confidence            99999988877777777899999999999998653          34568999998877654433  2346889999999


Q ss_pred             CCcceEEEEEEeCCccEEEEEeCCCceee-------eeec------------------------------------ccCC
Q 016257          209 GTKPFLFCTVQRGDKALLAVYDISTWNKI-------GHKR------------------------------------LLRK  245 (392)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~-------~~~~------------------------------------~~~~  245 (392)
                      |+.     ++.++.++.+.+||.......       ....                                    ....
T Consensus       190 g~~-----l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (360)
T d1k32a3         190 SKN-----LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG  264 (360)
T ss_dssp             SCE-----EEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCB
T ss_pred             CCE-----EEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcC
Confidence            997     677888888999986542210       0000                                    0011


Q ss_pred             CcEEEEECCCCC-------------EEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeE
Q 016257          246 PASVLSISLDGK-------------YLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGA  312 (392)
Q Consensus       246 ~v~~~~~s~~~~-------------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  312 (392)
                      ....+...+++.             ++++++.++.|++||+.+++...     | .+.|.+++|+|||++|++++.||.|
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-----~-~~~v~~~~~SpDG~~l~~~~~Dg~i  338 (360)
T d1k32a3         265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-----V-KNNLTDLRLSADRKTVMVRKDDGKI  338 (360)
T ss_dssp             CEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-----E-EEEEEEEEECTTSCEEEEEETTSCE
T ss_pred             ceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE-----e-cCCcCEEEECCCCCEEEEEECCCeE
Confidence            223333333322             23445567889999999876532     3 4568999999999999999999999


Q ss_pred             EEEEeecCccc
Q 016257          313 MITKLTVPADW  323 (392)
Q Consensus       313 ~iw~~~~~~~~  323 (392)
                      ++|++..+...
T Consensus       339 ~v~d~~~~~~~  349 (360)
T d1k32a3         339 YTFPLEKPEDE  349 (360)
T ss_dssp             EEEESSCTTSC
T ss_pred             EEEECCCCCcc
Confidence            99999877653

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=1.9e-27  Score=208.01  Aligned_cols=281  Identities=10%  Similarity=-0.026  Sum_probs=200.5

Q ss_pred             eeEEEEcC-CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC--cEEEEeCC
Q 016257           66 PMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG--HLRIMHWP  142 (392)
Q Consensus        66 v~~~~~sp-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~i~d~~  142 (392)
                      ...-.||| ||+++|+++. |.|++||+.++....         +.|...|.+++|+|||++|++++.+.  .|++||.+
T Consensus         5 ~~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~---------~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~   74 (360)
T d1k32a3           5 KFAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLK---------VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYR   74 (360)
T ss_dssp             GGEEEEEECGGGCEEEEET-TEEEEECTTSSBEEE---------CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETT
T ss_pred             hhcccccCCCCCEEEEEEC-CeEEEEECCCCcEEE---------ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECC
Confidence            34577999 9999999764 689999987765321         13778999999999999998776553  79999998


Q ss_pred             CCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEE-----
Q 016257          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT-----  217 (392)
Q Consensus       143 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----  217 (392)
                      +++.. .+..+...+.+++|+|++++|++++.++.+++|++.+++....+..+. ..+.+++|+|+++.+.....     
T Consensus        75 ~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~la~~~~~~~~~  152 (360)
T d1k32a3          75 TGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE-AMITDFTISDNSRFIAYGFPLKHGE  152 (360)
T ss_dssp             TCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS-SCCCCEEECTTSCEEEEEEEECSST
T ss_pred             CCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccceeeeeeccc-ccccchhhccceeeeeeeccccccc
Confidence            87665 566788899999999999999999999999999999988877776554 46899999999997321100     


Q ss_pred             EEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceee-------eeee-------
Q 016257          218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN-------HWSK-------  283 (392)
Q Consensus       218 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-------~~~~-------  283 (392)
                      ..+..++.+++||+.+++... ...+...+..++|+|+|++|++++.++.+.+||.......       ..+.       
T Consensus       153 ~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  231 (360)
T d1k32a3         153 TDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPN  231 (360)
T ss_dssp             TCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCC
T ss_pred             eeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccc
Confidence            024456789999999876653 4445677889999999999999999999999986543211       0000       


Q ss_pred             ----------------------------ccccCcceEEEEEeeCC-------------CeEEEEeCCCeEEEEEeecCcc
Q 016257          284 ----------------------------RLHLGTSIALVEFCPTQ-------------RVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       284 ----------------------------~~~~~~~i~~~~~s~~~-------------~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                                                  ... .+....+...+++             .++++++.++.+++|++...+.
T Consensus       232 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  310 (360)
T d1k32a3         232 PTKLVPRSMTSEAGEYDLNDMYKRSSPINVD-PGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV  310 (360)
T ss_dssp             GGGCCCGGGSCCCCCCCCTTGGGGCEECSCC-CBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE
T ss_pred             cceECCCcCcccccceeecccccceeecccC-cCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE
Confidence                                        000 1122333333222             2455666788999999876543


Q ss_pred             ccceeeeeeeeeeeeeceEEEEeeecceeeeeccccccc
Q 016257          323 WKEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPVARN  361 (392)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~~~~  361 (392)
                      .. ..-...-.........+++++.|+.|++|++..++.
T Consensus       311 ~~-~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         311 TE-VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             EE-EEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTS
T ss_pred             EE-ecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCc
Confidence            21 111111111222345778888899999999987764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=5.9e-26  Score=203.46  Aligned_cols=294  Identities=9%  Similarity=0.004  Sum_probs=194.8

Q ss_pred             ecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEE
Q 016257           10 GSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKL   89 (392)
Q Consensus        10 ~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~i   89 (392)
                      ..+..+...+.+|+ ..      .++.|++|+..        +......+..| ..+..++|||||++|++++.|+++++
T Consensus        24 ~~~~~d~~~~~~V~-~~------~dg~v~vwD~~--------t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~v   87 (426)
T d1hzua2          24 QLNDLDLPNLFSVT-LR------DAGQIALVDGD--------SKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDM   87 (426)
T ss_dssp             CCSCCCGGGEEEEE-ET------TTTEEEEEETT--------TCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             ccccCCCCeEEEEE-Ec------CCCEEEEEECC--------CCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEE
Confidence            34555655533343 33      36789999876        44555667776 46999999999999999999999999


Q ss_pred             EEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEE-eCCCcEEEEeCCCCceeecccCCCC-----------cE
Q 016257           90 FEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHK-----------SV  157 (392)
Q Consensus        90 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~-----------~i  157 (392)
                      ||+.+++.........  ...|...+.+++|+|||++++++ ..++.+++||.++++.......+..           ..
T Consensus        88 wd~~t~~~~~~~~i~~--~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (426)
T d1hzua2          88 IDLWAKEPTKVAEIKI--GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV  165 (426)
T ss_dssp             EETTSSSCEEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred             EEccCCceeEEEEEeC--CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCce
Confidence            9998886433221111  11244556677889999987555 5789999999999887655443322           34


Q ss_pred             EEEEecCCCCeEEEEcC-CCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEE---------------------
Q 016257          158 LDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF---------------------  215 (392)
Q Consensus       158 ~~i~~~~~~~~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---------------------  215 (392)
                      ..+.+++++..++.... .+.+.+++.................+..++|+|++++++..                     
T Consensus       166 ~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~  245 (426)
T d1hzua2         166 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV  245 (426)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred             eEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEe
Confidence            55666777766554433 35566666655543333222334467888999988863210                     


Q ss_pred             ----------------------EEEEeCCccEEEEEeCCC-------ceeeeeecccCCCcEEEEECCCCCEEEE-----
Q 016257          216 ----------------------CTVQRGDKALLAVYDIST-------WNKIGHKRLLRKPASVLSISLDGKYLAM-----  261 (392)
Q Consensus       216 ----------------------~~~~~~~d~~i~v~d~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----  261 (392)
                                            .......++.+.+|+...       ++....+..|...+..++|+||+++|++     
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~  325 (426)
T d1hzua2         246 DVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFN  325 (426)
T ss_dssp             ECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTC
T ss_pred             ccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCC
Confidence                                  011222344444444332       2344456677778899999999999995     


Q ss_pred             --EeCCCcEEEEecCCceeeeeee--------ccccCcceEEEEEeeCCCeEEEE-----eCCCeEEEEEeecCcc
Q 016257          262 --GSKDGDICVVDVKKMEINHWSK--------RLHLGTSIALVEFCPTQRVVLTA-----SKEWGAMITKLTVPAD  322 (392)
Q Consensus       262 --~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~i~~~~~s~~~~~l~~~-----~~dg~i~iw~~~~~~~  322 (392)
                        +..|++|++||+++++....+.        ..+ ...+.+++|||||++++.+     +.+|.|+|||..+.+.
T Consensus       326 ~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~-~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~  400 (426)
T d1hzua2         326 PDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG-AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL  400 (426)
T ss_dssp             SSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS-CCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred             CCcccCCEEEEEECCCCCcCeEEeccchhcccCCC-CccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeE
Confidence              4567899999999987654431        123 5569999999999976433     3578999999886654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=3.3e-23  Score=176.18  Aligned_cols=263  Identities=16%  Similarity=0.149  Sum_probs=200.3

Q ss_pred             CcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEE-EEeCCCeEEEEEEeCCccceeeccccCCCCCC
Q 016257           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (392)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  111 (392)
                      .++.|.+|+.+        +.....++.. ...+..++|+|||++|+ ++..++.|++||+.+++....+..        
T Consensus        10 ~~~~v~v~D~~--------t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~--------   72 (301)
T d1l0qa2          10 ESDNISVIDVT--------SNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA--------   72 (301)
T ss_dssp             TTTEEEEEETT--------TTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC--------
T ss_pred             CCCEEEEEECC--------CCeEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec--------
Confidence            36678888765        3334444543 35688999999999875 566789999999998876554432        


Q ss_pred             CCCeEEEEecCCCCEEEE-EeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEE-EEcCCCcEEEEECCCCeee
Q 016257          112 AGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAW  189 (392)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~vwd~~~~~~~  189 (392)
                      ...+..+.|++++..+++ +..++.+.+|+..+++....+. +......+.|+|+++.++ ++..++.+.+|+..+.+..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~  151 (301)
T d1l0qa2          73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI  151 (301)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cccccccccccccccccccccccceeeecccccceeeeecc-ccccceEEEeecCCCeeeeeeccccceeeeecccccee
Confidence            235789999999987655 4567789999999887765544 445678899999998765 5556788999999999888


Q ss_pred             EEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeC---CC
Q 016257          190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK---DG  266 (392)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg  266 (392)
                      ..+....  .+..++++|++..+    +.+....+.+.+|+....+....... ......++++++++.+++++.   ++
T Consensus       152 ~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~  224 (301)
T d1l0qa2         152 NTVSVGR--SPKGIAVTPDGTKV----YVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFN  224 (301)
T ss_dssp             EEEECCS--SEEEEEECTTSSEE----EEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred             eecccCC--CceEEEeeccccce----eeecccccccccccccceeeeecccc-cCCcceeeccccccccccccccceee
Confidence            8876543  57899999999862    34555678888999887776655443 445678999999998876653   46


Q ss_pred             cEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeE-EEEeCCCeEEEEEeecCccc
Q 016257          267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV-LTASKEWGAMITKLTVPADW  323 (392)
Q Consensus       267 ~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~  323 (392)
                      .|++||+.+++....+..   ...+.+++|+|||++| ++++.|+.|++||+...+..
T Consensus       225 ~v~v~D~~t~~~~~~~~~---~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         225 TVSMIDTGTNKITARIPV---GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT  279 (301)
T ss_dssp             EEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             eeeeeecCCCeEEEEEcC---CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence            799999999998876643   4568999999999976 57778999999999866543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=8.2e-24  Score=189.16  Aligned_cols=322  Identities=7%  Similarity=-0.069  Sum_probs=223.2

Q ss_pred             CcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCC
Q 016257           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA  112 (392)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  112 (392)
                      .++++.+|+.+        .......+..| ..+..++|||||+++++++.|+.+++||+.+++.........  ...|.
T Consensus        40 d~g~v~v~D~~--------t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~--~~~~~  108 (432)
T d1qksa2          40 DAGQIALIDGS--------TYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSEAR  108 (432)
T ss_dssp             TTTEEEEEETT--------TCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--CSEEE
T ss_pred             CCCEEEEEECC--------CCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEec--CCCCC
Confidence            36778888876        55556667766 469999999999999999999999999998765332211110  11233


Q ss_pred             CCeEEEEecCCCCEE-EEEeCCCcEEEEeCCCCceeecccCC-----------CCcEEEEEecCCCCeE-EEEcCCCcEE
Q 016257          113 GPQKCLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIILDEPKA-----------HKSVLDMDFSLDSEFL-ATTSTDGSAR  179 (392)
Q Consensus       113 ~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~i~~i~~~~~~~~l-~~~~~d~~i~  179 (392)
                      +.+.+..|+|||++| ++++.++.|++||.++++.+.....+           ......+.++|++..+ ++...++.|.
T Consensus       109 ~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~  188 (432)
T d1qksa2         109 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL  188 (432)
T ss_dssp             EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             CeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEE
Confidence            455666788999986 67778999999999998876554332           2356678999999875 5566789999


Q ss_pred             EEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecc-----cCCCcEEEEECC
Q 016257          180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-----LRKPASVLSISL  254 (392)
Q Consensus       180 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-----~~~~v~~~~~s~  254 (392)
                      +||..+.+.......+....+..++|+|+++++    ++++..++.+.++|.++++.......     +........+..
T Consensus       189 ~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~----~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  264 (432)
T d1qksa2         189 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF----ITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT  264 (432)
T ss_dssp             EEETTCSSEEEEEEEECCSSEEEEEECTTSCEE----EEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT
T ss_pred             EEEccCCCcceEEEEcccCccccceECCCCCEE----EEeccccceEEEeecccceEEEEeccCccccccCcccceecCC
Confidence            999988776655544455578999999999962    45666778999999998877655432     233444555555


Q ss_pred             CCCEEEEEe-CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccc-eeeeeee
Q 016257          255 DGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKE-WQIYSLL  332 (392)
Q Consensus       255 ~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~  332 (392)
                      .+...++.. .++.+.+|+......     ..| ...+....++|++..+++++.++..++|.......... ......+
T Consensus       265 ~g~~~~~~~lg~~~v~~~~~~~~~~-----~~~-~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vp  338 (432)
T d1qksa2         265 FGPVWATSHMGDDSVALIGTDPEGH-----PDN-AWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVF  338 (432)
T ss_dssp             TEEEEEEEBSSSSEEEEEECCTTTC-----TTT-BTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEE
T ss_pred             CCceecccccCCceEEecccccccc-----ccc-ccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEE
Confidence            555555543 378899998765432     244 56788999999999999999999999998765433221 1112224


Q ss_pred             eeeeeeceEEEEeeecceeeeecccccccccCCCCcccccCCCCCccccc
Q 016257          333 LALFLASAVVFYIFFENSDSFWNFPVARNQHGGPKIESILRDPQSSDDQN  382 (392)
Q Consensus       333 ~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~~  382 (392)
                      ++.     .+.+++.|+.+++|++.++..+...+.  .++....+.|+..
T Consensus       339 Dg~-----~la~~s~d~~~k~w~~~~~~~l~~~~~--~v~~~~fS~DG~~  381 (432)
T d1qksa2         339 DIK-----AMTGDGSDPEFKTLPIAEWAGITEGQP--RVVQGEFNKDGTE  381 (432)
T ss_dssp             EGG-----GCCCSSSCCCEEEECHHHHHTCCSSCC--EEEEEEECTTSSE
T ss_pred             ech-----hhcccccCCceEecccccccccCCCCC--cEEEeEECCCCCE
Confidence            443     444555699999999987765543222  3455455555543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=4e-24  Score=191.40  Aligned_cols=276  Identities=8%  Similarity=-0.042  Sum_probs=190.9

Q ss_pred             EcCCCC--eEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceee
Q 016257           71 VNPSGD--DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL  148 (392)
Q Consensus        71 ~sp~~~--~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~  148 (392)
                      ++.|.+  ++++.+.||+|+|||+.+++....+..        ...+..++|||||++|++++.|+++++||+.+++...
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~--------g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~   97 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT--------GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK   97 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEEC--------CSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeC--------CCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeE
Confidence            444433  457778899999999999887666542        2468999999999999999999999999999887432


Q ss_pred             --cc---cCCCCcEEEEEecCCCCeEEEE-cCCCcEEEEECCCCeeeEEEecCC----------CcceEEEEecCCCCcc
Q 016257          149 --DE---PKAHKSVLDMDFSLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNS----------DEKIELCRFSKDGTKP  212 (392)
Q Consensus       149 --~~---~~~~~~i~~i~~~~~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~  212 (392)
                        ++   ..+...+.+++|+|||++++++ ..++.+++||..+++....+..+.          ......+.+++++...
T Consensus        98 ~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~  177 (426)
T d1hzua2          98 VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF  177 (426)
T ss_dssp             EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred             EEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEE
Confidence              22   2333456778889999987554 578999999999988877665332          2234556677777642


Q ss_pred             eEEEEEEeCCccEEEEEeCCCceeee-eecccCCCcEEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeee--------
Q 016257          213 FLFCTVQRGDKALLAVYDISTWNKIG-HKRLLRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWS--------  282 (392)
Q Consensus       213 ~~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~--------  282 (392)
                          ..+....+.+.+++........ ....+...+..++++|++++++++.. +..+.+++..+++.....        
T Consensus       178 ----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (426)
T d1hzua2         178 ----IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP  253 (426)
T ss_dssp             ----EEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCC
T ss_pred             ----EEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccc
Confidence                3445556777777766554322 23345677889999999998877764 445777776655433211        


Q ss_pred             ---------------------------------------------eccccCcceEEEEEeeCCCeEEE-------EeCCC
Q 016257          283 ---------------------------------------------KRLHLGTSIALVEFCPTQRVVLT-------ASKEW  310 (392)
Q Consensus       283 ---------------------------------------------~~~~~~~~i~~~~~s~~~~~l~~-------~~~dg  310 (392)
                                                                   ..+| ...+..++|+||+++|++       ++.|+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~-~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~  332 (426)
T d1hzua2         254 GRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ-GGGSLFIKTHPKSSHLYVDTTFNPDARISQ  332 (426)
T ss_dssp             SCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECS-SSCCCCEECCTTCSEEEECCTTCSSHHHHT
T ss_pred             cceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecC-CCceeEEEcCCCCceEEEeecCCCCcccCC
Confidence                                                         1244 566888999999999994       45678


Q ss_pred             eEEEEEeecCccc-----------------cceeeeeeeeeeeeeceEEEEe----eecceeeeeccccccccc
Q 016257          311 GAMITKLTVPADW-----------------KEWQIYSLLLALFLASAVVFYI----FFENSDSFWNFPVARNQH  363 (392)
Q Consensus       311 ~i~iw~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~----~~d~~i~~W~~~~~~~~~  363 (392)
                      +|++|++......                 +++++.+++++..+    ++++    ..++.|++||..+++...
T Consensus       333 tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i----~vs~~~~~~~~~~i~v~D~~T~k~~~  402 (426)
T d1hzua2         333 SVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEV----WFSVWNGKNDSSALVVVDDKTLKLKA  402 (426)
T ss_dssp             CEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEE----EEEECCCTTSCCEEEEEETTTTEEEE
T ss_pred             EEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEE----EEEEecCCCCCCeEEEEECCCCeEEE
Confidence            9999998765432                 13344455555322    1222    247889999999987543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=1.2e-22  Score=175.39  Aligned_cols=229  Identities=11%  Similarity=-0.001  Sum_probs=174.3

Q ss_pred             CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEE-EEeCCCcEEEEeCCCCceeecccCCC
Q 016257           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWPSLRIILDEPKAH  154 (392)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~  154 (392)
                      +++++++.|++|+|||+.+.+....+....     +...+.+++|+|||++++ +++.++.|.+||+++++.+.....+.
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~-----~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~   76 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIAD-----AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTT-----CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCC-----CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCC
Confidence            489999999999999999987665543321     334578899999999875 56678999999999999876655443


Q ss_pred             C-----cEEEEEecCCCCeEEEEc------------CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEE
Q 016257          155 K-----SVLDMDFSLDSEFLATTS------------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (392)
Q Consensus       155 ~-----~i~~i~~~~~~~~l~~~~------------~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (392)
                      .     .+..++|+|++++++++.            .+..+.+||..+++....+...  ..+..++|+|+++.     +
T Consensus        77 ~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~-----l  149 (337)
T d1pbyb_          77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWARDGSK-----L  149 (337)
T ss_dssp             TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECTTSSC-----E
T ss_pred             CcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc--CCceEEEEcCCCCE-----E
Confidence            2     356789999999988775            3577899999999988887744  35788999999997     4


Q ss_pred             EEeCCccEEEEEeCCCceeeee----------------------------------------------------------
Q 016257          218 VQRGDKALLAVYDISTWNKIGH----------------------------------------------------------  239 (392)
Q Consensus       218 ~~~~~d~~i~v~d~~~~~~~~~----------------------------------------------------------  239 (392)
                      ++++.+  +.+||..+++....                                                          
T Consensus       150 ~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (337)
T d1pbyb_         150 YGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE  227 (337)
T ss_dssp             EEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT
T ss_pred             EEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcC
Confidence            455443  55666655332211                                                          


Q ss_pred             --------ecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCe
Q 016257          240 --------KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWG  311 (392)
Q Consensus       240 --------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  311 (392)
                              ...+......++++|++.+++.+  ++.|++||+++++.+..+..   ...+.+++|+|||++|++++.|+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~s~dG~~l~v~~~~~~  302 (337)
T d1pbyb_         228 TGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGD  302 (337)
T ss_dssp             TCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSE
T ss_pred             CCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcC---CCCEEEEEECCCCCEEEEEeCCCc
Confidence                    11223345567778888887765  57899999999998887643   557899999999999999999999


Q ss_pred             EEEEEeecCccc
Q 016257          312 AMITKLTVPADW  323 (392)
Q Consensus       312 i~iw~~~~~~~~  323 (392)
                      |++||....+..
T Consensus       303 i~v~D~~t~~~v  314 (337)
T d1pbyb_         303 LAAYDAETLEKK  314 (337)
T ss_dssp             EEEEETTTCCEE
T ss_pred             EEEEECCCCcEE
Confidence            999999866543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=1.2e-21  Score=166.26  Aligned_cols=267  Identities=12%  Similarity=0.086  Sum_probs=198.3

Q ss_pred             EEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEE-EEeCCCcEEEEeCCCCceeecccCCCCcE
Q 016257           79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWPSLRIILDEPKAHKSV  157 (392)
Q Consensus        79 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~i  157 (392)
                      ++++.+++|.+||+.+++....+..        ...+..++|+|||++|+ +++.++.|++||+.+++.+..+..+ ..+
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~--------g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~-~~~   76 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPV--------GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSP   76 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEEC--------SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSE
T ss_pred             EEECCCCEEEEEECCCCeEEEEEEC--------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecc-ccc
Confidence            4567889999999999876555432        24578999999999875 5667899999999999887766544 457


Q ss_pred             EEEEecCCCCeEE-EEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee
Q 016257          158 LDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (392)
Q Consensus       158 ~~i~~~~~~~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~  236 (392)
                      ..+.|+++++.++ ++..++.+.+|+..+++....+..+.  ....+.|+|++..+    ++++..+..+.+|+..+.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~dg~~~----~~~~~~~~~~~~~~~~~~~~  150 (301)
T d1l0qa2          77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKL----YVTNNGDKTVSVINTVTKAV  150 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEE----EEEETTTTEEEEEETTTTEE
T ss_pred             cccccccccccccccccccceeeecccccceeeeeccccc--cceEEEeecCCCee----eeeeccccceeeeeccccce
Confidence            8899999998655 55677889999999998888876543  57899999999962    46677889999999999888


Q ss_pred             eeeecccCCCcEEEEECCCCCEEEEEeCC-CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeC---CCeE
Q 016257          237 IGHKRLLRKPASVLSISLDGKYLAMGSKD-GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK---EWGA  312 (392)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i  312 (392)
                      ...+.. ...+..++++|+++.+++++.+ +.+.+|+....+.......   ...+..++|++++..++.++.   ++.|
T Consensus       151 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~v~~~~~~~~~v  226 (301)
T d1l0qa2         151 INTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTV  226 (301)
T ss_dssp             EEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEE
T ss_pred             eeeccc-CCCceEEEeeccccceeeecccccccccccccceeeeecccc---cCCcceeeccccccccccccccceeeee
Confidence            766654 3457889999999998888765 5677888777776665432   456788999999998766543   4689


Q ss_pred             EEEEeecCccccceeeeeeeeeeee--eceEEE-EeeecceeeeecccccccccC
Q 016257          313 MITKLTVPADWKEWQIYSLLLALFL--ASAVVF-YIFFENSDSFWNFPVARNQHG  364 (392)
Q Consensus       313 ~iw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~d~~i~~W~~~~~~~~~~  364 (392)
                      ++||+...+..........+.+...  ....++ +...++.|++||+.+++.+..
T Consensus       227 ~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~  281 (301)
T d1l0qa2         227 SMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITAT  281 (301)
T ss_dssp             EEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence            9999886654332222112222222  223443 445789999999999876543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=3.2e-23  Score=179.75  Aligned_cols=287  Identities=10%  Similarity=-0.057  Sum_probs=201.0

Q ss_pred             ecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEee-CCCCCeeEEEEcCCCCeEE-EEeCCCeE
Q 016257           10 GSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEGDPMTIAVNPSGDDFV-CSTTNGGC   87 (392)
Q Consensus        10 ~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~-~~~~d~~i   87 (392)
                      ++|+++++   ++++++.      ++.|.+|+++        +.....+++ .|...+.+++|+|||++++ ++..++.|
T Consensus         2 ~a~~~~~~---~l~~~~~------~~~v~v~D~~--------t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v   64 (346)
T d1jmxb_           2 PALKAGHE---YMIVTNY------PNNLHVVDVA--------SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI   64 (346)
T ss_dssp             CCCCTTCE---EEEEEET------TTEEEEEETT--------TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred             ccCCCCCc---EEEEEcC------CCEEEEEECC--------CCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcE
Confidence            57888884   4554444      6778888876        334445554 4566789999999999875 55578999


Q ss_pred             EEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe------------CCCcEEEEeCCCCceeecccCC--
Q 016257           88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG------------VDGHLRIMHWPSLRIILDEPKA--  153 (392)
Q Consensus        88 ~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~--  153 (392)
                      ++||+.+++......... ....+...+..++|+|||+++++++            .+..+.+|+..+++....+..+  
T Consensus        65 ~~~d~~t~~~~~~~~~~~-~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  143 (346)
T d1jmxb_          65 YGIDLDTCKNTFHANLSS-VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM  143 (346)
T ss_dssp             EEEETTTTEEEEEEESCC-STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC
T ss_pred             EEEeCccCeeeeeecccc-cccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeec
Confidence            999999887655443221 1111223467899999999988765            4677899998877654433322  


Q ss_pred             CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE-------------------
Q 016257          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL-------------------  214 (392)
Q Consensus       154 ~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------------------  214 (392)
                      ...+..+.++++++.++++   +.+.+|++.+++....+..+.  ....+.++|++...+.                   
T Consensus       144 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (346)
T d1jmxb_         144 PRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRN--WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD  218 (346)
T ss_dssp             CSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTT--CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--
T ss_pred             cCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecCC--CccceEEeccccEEEEEecCCCceEeeeeeeeecc
Confidence            2345566777777655543   568999999988888776432  3445556666544210                   


Q ss_pred             --EEEEEeCCccEEEEEeCCCceeeee-ecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcce
Q 016257          215 --FCTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI  291 (392)
Q Consensus       215 --~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i  291 (392)
                        ..+.++..+..+.+||..++..... ...+...+..+.+++++.+++.... +.|.+||..+++.+..+..   ...+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~---~~~~  294 (346)
T d1jmxb_         219 DKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANL---DHTY  294 (346)
T ss_dssp             -----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEEC---SSCC
T ss_pred             CceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcC---CCCE
Confidence              0012233456688889887765433 3456678888999999888887764 5799999999998887654   4479


Q ss_pred             EEEEEeeCCCeEEEEeCCCeEEEEEeecCccc
Q 016257          292 ALVEFCPTQRVVLTASKEWGAMITKLTVPADW  323 (392)
Q Consensus       292 ~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  323 (392)
                      .+++|+|||++|++++.|+.|++||+...+..
T Consensus       295 ~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         295 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             CEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECccCCEE
Confidence            99999999999999999999999999866543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=5e-21  Score=170.89  Aligned_cols=267  Identities=12%  Similarity=0.029  Sum_probs=188.7

Q ss_pred             eEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee--ecc---c
Q 016257           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII--LDE---P  151 (392)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~---~  151 (392)
                      ++++.+.+|+|.|||..+++....+..        ...+..++|||||+++++++.|+.+++||+.+++..  .++   .
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~--------g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~  105 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDT--------GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS  105 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEEC--------SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeC--------CCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC
Confidence            457889999999999999987766643        236899999999999999999999999999887632  222   2


Q ss_pred             CCCCcEEEEEecCCCCeE-EEEcCCCcEEEEECCCCeeeEEEecC----------CCcceEEEEecCCCCcceEEEEEEe
Q 016257          152 KAHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTRN----------SDEKIELCRFSKDGTKPFLFCTVQR  220 (392)
Q Consensus       152 ~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~~  220 (392)
                      .+.+.+.+..|+|||++| ++++.++.+++||..+++.+..+..+          .......+.++|++...    +++.
T Consensus       106 ~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~----~vs~  181 (432)
T d1qksa2         106 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF----IVNV  181 (432)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE----EEEE
T ss_pred             CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEE----EEEE
Confidence            333456667788999986 67788999999999999988776532          22345678899998862    4677


Q ss_pred             CCccEEEEEeCCCceeeeeec-ccCCCcEEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeecc----ccCcceEEE
Q 016257          221 GDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSKRL----HLGTSIALV  294 (392)
Q Consensus       221 ~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~----~~~~~i~~~  294 (392)
                      ..++.|.+||..+.+...... ........++|+|+|+++++++. ++.+.++|..+++....+..+    | .......
T Consensus       182 ~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~-~~~~~~~  260 (432)
T d1qksa2         182 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPH-PGRGANF  260 (432)
T ss_dssp             TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBC-CTTCEEE
T ss_pred             ccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccc-cCcccce
Confidence            788999999998876544333 33556789999999998887775 457899999998877665432    2 3344445


Q ss_pred             EEeeCCCeEEEEe-CCCeEEEEEeecCccc-cceeeeeeeeeeeeeceEEEEeeecceeeeecccc
Q 016257          295 EFCPTQRVVLTAS-KEWGAMITKLTVPADW-KEWQIYSLLLALFLASAVVFYIFFENSDSFWNFPV  358 (392)
Q Consensus       295 ~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~W~~~~  358 (392)
                      .+...+...++.. .|+.+.+|........ ..|.+.....  ......+++++.++..++|+..+
T Consensus       261 ~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~--~~~g~~~~~~s~p~~~~lw~~~~  324 (432)
T d1qksa2         261 VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP--ALGGGSLFIKTHPNSQYLYVDAT  324 (432)
T ss_dssp             EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE--CSCSCCCCEECCTTCSEEEEECT
T ss_pred             ecCCCCceecccccCCceEEecccccccccccccEEEEEEE--cCCCCeEEEEecCCccceeeccc
Confidence            5544455554443 3789999987643221 1232221111  11234566677788999997654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.89  E-value=6.4e-20  Score=160.72  Aligned_cols=295  Identities=7%  Similarity=-0.065  Sum_probs=196.8

Q ss_pred             CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe
Q 016257            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (392)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~   82 (392)
                      ..+|+.+++++||+.++  ++.....    ......+|.+|..+      ......+..+..  ..++|+|||++|++++
T Consensus        19 ~~~p~~~~a~spdg~~~--~~~~~~~----~~~~~~v~v~D~~t------g~~~~~~~~~~~--~~~a~SpDG~~l~va~   84 (373)
T d2madh_          19 ADGPTNDEAPGADGRRS--YINLPAH----HSAIIQQWVLDAGS------GSILGHVNGGFL--PNPVAAHSGSEFALAS   84 (373)
T ss_pred             CCCCccccccCCCCCEE--EEEcccc----cCCCceEEEEECCC------CCEEEEEeCCCC--ccEEEcCCCCEEEEEe
Confidence            36789999999999873  3322211    13334567776553      233344555443  3799999999998875


Q ss_pred             ----------CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe--CCCcEEEEeCCCCceeecc
Q 016257           83 ----------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDE  150 (392)
Q Consensus        83 ----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~  150 (392)
                                .++.|.+||..+++.....................+.|+++++.++...  .++.+.+|+..+.+.... 
T Consensus        85 ~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~-  163 (373)
T d2madh_          85 TSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL-  163 (373)
T ss_pred             ecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE-
Confidence                      4578999999998865554332211111122345688999998776654  456788999877655432 


Q ss_pred             cCCCCcEEEEEecCCCCeE-EEEcCCCcEEEEECCCCeeeEEEecCC-----CcceEEEEecCCCCcceEEEEEEeCCcc
Q 016257          151 PKAHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTRNS-----DEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (392)
Q Consensus       151 ~~~~~~i~~i~~~~~~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~d~  224 (392)
                         .....++.++|+++.+ ++.+.|+++.+|+...++.........     ......+.+.+++.      .+..+.++
T Consensus       164 ---~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  234 (373)
T d2madh_         164 ---LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR------IVWPVYSG  234 (373)
T ss_pred             ---eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce------EEEecCCc
Confidence               2345678899998754 678899999999998887766554221     11234455666655      46667788


Q ss_pred             EEEEEeCCCceeeeee--ccc----------CCCcEEEEECCCCCEEE----------EEeCCCcEEEEecCCceeeeee
Q 016257          225 LLAVYDISTWNKIGHK--RLL----------RKPASVLSISLDGKYLA----------MGSKDGDICVVDVKKMEINHWS  282 (392)
Q Consensus       225 ~i~v~d~~~~~~~~~~--~~~----------~~~v~~~~~s~~~~~l~----------~~~~dg~i~iwd~~~~~~~~~~  282 (392)
                      .+.+|+..........  ...          ......+++++++..++          ....++.+.+||..+++....+
T Consensus       235 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~  314 (373)
T d2madh_         235 KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI  314 (373)
T ss_pred             eEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe
Confidence            8999998876432111  111          12334566677666544          3455678999999999988776


Q ss_pred             eccccCcceEEEEEeeCCC--eEEEEeCCCeEEEEEeecCcccc
Q 016257          283 KRLHLGTSIALVEFCPTQR--VVLTASKEWGAMITKLTVPADWK  324 (392)
Q Consensus       283 ~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~iw~~~~~~~~~  324 (392)
                      .  + ...+..++|+|||+  ++++++.|+.|++||+..++...
T Consensus       315 ~--~-~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~  355 (373)
T d2madh_         315 S--L-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ  355 (373)
T ss_pred             c--C-CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence            3  3 56789999999998  45688899999999998776543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=5.2e-20  Score=158.51  Aligned_cols=273  Identities=10%  Similarity=0.065  Sum_probs=185.4

Q ss_pred             CcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe-CCCeEEEEEEeCCccceeeccccCCCCCC
Q 016257           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (392)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  111 (392)
                      .++.|++|.++..+      .........|.+.|..++|+|||++|++++ .|+.|++|++.............    .+
T Consensus        12 ~~~~I~v~~~~~~~------~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~----~~   81 (333)
T d1ri6a_          12 ESQQIHVWNLNHEG------ALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES----AL   81 (333)
T ss_dssp             GGTEEEEEEECTTS------CEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE----EC
T ss_pred             CCCcEEEEEEcCCC------CeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec----cc
Confidence            47889999998543      122233345789999999999999986655 58999999998765444333221    13


Q ss_pred             CCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCCceeec--ccCCCCcEEEEEecCCCCeEEEEc-CCCcEEEEECCCCe
Q 016257          112 AGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILD--EPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGV  187 (392)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~~  187 (392)
                      ...+..++|+|||++|++++. ++.+.+|+.........  ...+...+.++.++|++++++.++ .+..+.+|+.....
T Consensus        82 ~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~  161 (333)
T d1ri6a_          82 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  161 (333)
T ss_dssp             SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCC
Confidence            345678999999999999875 67899998876554322  234445688899999999887776 44679999987653


Q ss_pred             eeEE-----EecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee----eeeec------ccCCCcEEEEE
Q 016257          188 AWTF-----LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK----IGHKR------LLRKPASVLSI  252 (392)
Q Consensus       188 ~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~----~~~~~------~~~~~v~~~~~  252 (392)
                      ....     ...........++|++++...    .......+...+++......    .....      ........+++
T Consensus       162 ~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (333)
T d1ri6a_         162 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYA----YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  237 (333)
T ss_dssp             CEEEEEEEEEECSTTCCEEEEEECTTSSEE----EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             cceeeeceeeeeecCCCccEEEEeccceeE----EeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEE
Confidence            3221     222333456889999999862    34555666777777653221    11111      12345677899


Q ss_pred             CCCCCEEEEEe-CCCcEEEEecCCceeeeeee--ccccCcceEEEEEeeCCCeEEEEe-CCCeEEEEEeecC
Q 016257          253 SLDGKYLAMGS-KDGDICVVDVKKMEINHWSK--RLHLGTSIALVEFCPTQRVVLTAS-KEWGAMITKLTVP  320 (392)
Q Consensus       253 s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~  320 (392)
                      ++++++++... .++.+.+|++..........  ... ...+.+++|+|||++|++++ .++.|++|+++..
T Consensus       238 s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~  308 (333)
T d1ri6a_         238 TPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT-ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE  308 (333)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC-SSSCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred             ecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCC-CCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECC
Confidence            99998766654 56789999887543222221  122 45678899999999877765 4689999988753

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=6.8e-21  Score=164.19  Aligned_cols=230  Identities=16%  Similarity=0.128  Sum_probs=166.0

Q ss_pred             CcCceeEEEEcCCCCccccCCceEEEee--CCCCCeeEEEEcCCCCeEE-EEeCCCeEEEEEEeCCccceeeccccCCCC
Q 016257           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFD--ESEGDPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPL  109 (392)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  109 (392)
                      .++.|.+|+.+        +......+.  .+...+.+++|+|||++++ +++.++.|.+||+.+++..........  .
T Consensus         9 ~d~~v~v~D~~--------s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~--~   78 (337)
T d1pbyb_           9 RPDKLVVIDTE--------KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP--E   78 (337)
T ss_dssp             TTTEEEEEETT--------TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT--T
T ss_pred             CCCEEEEEECC--------CCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC--c
Confidence            37789999876        333344443  3456788999999999875 667889999999999876555433211  1


Q ss_pred             CCCCCeEEEEecCCCCEEEEEe------------CCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCc
Q 016257          110 QDAGPQKCLSFSVDGSRFAAGG------------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGS  177 (392)
Q Consensus       110 ~~~~~v~~~~~s~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~  177 (392)
                      .+...+..++|+|++++++++.            .+..+.+||..+++...... ....+..++|+|+++++++++.  .
T Consensus        79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~--~  155 (337)
T d1pbyb_          79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLGR--D  155 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEESS--S
T ss_pred             ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCCCEEEEEcC--C
Confidence            1223456799999999998775            35778999999888765554 3456788999999999998864  4


Q ss_pred             EEEEECCCCeeeEEEecC--------------------------------------------------------------
Q 016257          178 ARIWKTEDGVAWTFLTRN--------------------------------------------------------------  195 (392)
Q Consensus       178 i~vwd~~~~~~~~~~~~~--------------------------------------------------------------  195 (392)
                      +.+||..+++....+..+                                                              
T Consensus       156 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (337)
T d1pbyb_         156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE  235 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred             cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEE
Confidence            678888776554433211                                                              


Q ss_pred             ---CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEe
Q 016257          196 ---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (392)
Q Consensus       196 ---~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  272 (392)
                         +...+..+.++|++..     +.  ..++.|++||+++++.+..+. +...+.+++|+|||++|++++.|+.|++||
T Consensus       236 ~~~~~~~~~~~~~~~~~~~-----~~--~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D  307 (337)
T d1pbyb_         236 VRIMDVFYFSTAVNPAKTR-----AF--GAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             EEECSSCEEEEEECTTSSE-----EE--EEESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             ecCCCcceEEEEecccceE-----EE--EccccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence               1112233444555543     12  225789999999999887765 456788999999999999999999999999


Q ss_pred             cCCceeeeeee
Q 016257          273 VKKMEINHWSK  283 (392)
Q Consensus       273 ~~~~~~~~~~~  283 (392)
                      .++++.+..+.
T Consensus       308 ~~t~~~v~~i~  318 (337)
T d1pbyb_         308 AETLEKKGQVD  318 (337)
T ss_dssp             TTTCCEEEEEE
T ss_pred             CCCCcEEEEEE
Confidence            99999887764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=5.9e-22  Score=171.64  Aligned_cols=278  Identities=11%  Similarity=-0.025  Sum_probs=191.5

Q ss_pred             EEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEE-EeCCCcEEEEeCCCCcee
Q 016257           69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSLRII  147 (392)
Q Consensus        69 ~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~~  147 (392)
                      ++|++++++|++++.+++|.+||+.+++....+..      .+...+.+++|+|||+++++ +..++.|++||+.+++.+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~------~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~   75 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT   75 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC------SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEc------CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeee
Confidence            46899999999999999999999999876554432      13456789999999998754 557899999999999876


Q ss_pred             ecccCCC------CcEEEEEecCCCCeEEEEc------------CCCcEEEEECCCCeeeEEEecC-CCcceEEEEecCC
Q 016257          148 LDEPKAH------KSVLDMDFSLDSEFLATTS------------TDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKD  208 (392)
Q Consensus       148 ~~~~~~~------~~i~~i~~~~~~~~l~~~~------------~d~~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~  208 (392)
                      .......      ..+..++|+|||+++++++            .+..+.+|+..+++....+..+ ....+..+.++++
T Consensus        76 ~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (346)
T d1jmxb_          76 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD  155 (346)
T ss_dssp             EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred             eeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCC
Confidence            5543322      1356899999999988765            4677899998877654433221 1224566777777


Q ss_pred             CCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCE--------------------------EEEE
Q 016257          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY--------------------------LAMG  262 (392)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~--------------------------l~~~  262 (392)
                      +..      +..+  ..+.+||..+++.+..+..+. ....+.++|++..                          ++++
T Consensus       156 ~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (346)
T d1jmxb_         156 GSL------YVAG--PDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA  226 (346)
T ss_dssp             SCE------EEES--SSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC
T ss_pred             CEE------EEeC--CcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeec
Confidence            763      3333  348899998887766654332 2223334444332                          3334


Q ss_pred             eCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccccceeeeeeeeee--eeece
Q 016257          263 SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKEWQIYSLLLAL--FLASA  340 (392)
Q Consensus       263 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~--~~~~~  340 (392)
                      ..++.+.+||..++.........+ ...+..+.+++++.+++.... +.+++||+...+..........+.+.  .....
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~  304 (346)
T d1jmxb_         227 DLLYGYLSVDLKTGKTHTQEFADL-TELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGD  304 (346)
T ss_dssp             EEEEEEEEEETTTCCEEEEEEEEC-SSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSS
T ss_pred             cCCceEEEEECCCCceEEEEeecc-cceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCC
Confidence            445668889998888766655566 778899999999998887765 58999998766443322211111111  12345


Q ss_pred             EEEEeeecceeeeeccccccccc
Q 016257          341 VVFYIFFENSDSFWNFPVARNQH  363 (392)
Q Consensus       341 ~~~~~~~d~~i~~W~~~~~~~~~  363 (392)
                      .+++++.|+.|++||+.+++.+.
T Consensus       305 ~l~v~~~d~~v~v~D~~t~~~i~  327 (346)
T d1jmxb_         305 KLYLGGTFNDLAVFNPDTLEKVK  327 (346)
T ss_dssp             CEEEESBSSEEEEEETTTTEEEE
T ss_pred             EEEEEeCCCcEEEEECccCCEEE
Confidence            67777889999999999988664

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=5.5e-19  Score=153.54  Aligned_cols=290  Identities=11%  Similarity=-0.015  Sum_probs=187.0

Q ss_pred             ceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEE---
Q 016257            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS---   81 (392)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~---   81 (392)
                      .|+.-.+.+||+.++ ++.....   ....+.  +|.+|..+.      ....++..+  ....++|||||++|++.   
T Consensus         2 ~p~~~~a~spdg~~~-~v~~~~~---~~~~~~--v~v~D~~tg------~~~~~~~~g--~~~~~a~SpDg~~l~v~~~~   67 (355)
T d2bbkh_           2 EPRILEAPAPDARRV-YVNDPAH---FAAVTQ--QFVIDGEAG------RVIGMIDGG--FLPNPVVADDGSFIAHASTV   67 (355)
T ss_dssp             CCCBCCCCCCCTTEE-EEEECGG---GCSSEE--EEEEETTTT------EEEEEEEEC--SSCEEEECTTSSCEEEEEEE
T ss_pred             CCcEeEeeCCCCCEE-EEEeccc---CCCcCe--EEEEECCCC------cEEEEEECC--CCCceEEcCCCCEEEEEeCC
Confidence            466667889999873 3332221   112334  455554432      333344443  34479999999988764   


Q ss_pred             -------eCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe--CCCcEEEEeCCCCceeecccC
Q 016257           82 -------TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDEPK  152 (392)
Q Consensus        82 -------~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~  152 (392)
                             ..++.|++||..+++.....................++|+++++++++++  .+..+.+|+..+++....+..
T Consensus        68 ~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  147 (355)
T d2bbkh_          68 FSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV  147 (355)
T ss_dssp             EEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             CccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEec
Confidence                   34788999999988866555433322222334556789999999888775  456799999999887665543


Q ss_pred             CCC-------cEEEEEecCCCCeEEEEc-CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCcc
Q 016257          153 AHK-------SVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (392)
Q Consensus       153 ~~~-------~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~  224 (392)
                      +..       ....+.++++++.++... .++.+.+++......      .....+....+.+++..     ++..+.++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-----~~~~~~~~  216 (355)
T d2bbkh_         148 PDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP------EDEFLINHPAYSQKAGR-----LVWPTYTG  216 (355)
T ss_dssp             CSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC------TTSCBCSCCEEETTTTE-----EEEEBTTS
T ss_pred             CCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc------eecceeeeccccCCCCe-----EEEecCCC
Confidence            322       223455666666554432 334455555433221      12223455667777765     67778899


Q ss_pred             EEEEEeCCCceeeee--eccc----------CCCcEEEEECCCCCEEEEEeCC----------CcEEEEecCCceeeeee
Q 016257          225 LLAVYDISTWNKIGH--KRLL----------RKPASVLSISLDGKYLAMGSKD----------GDICVVDVKKMEINHWS  282 (392)
Q Consensus       225 ~i~v~d~~~~~~~~~--~~~~----------~~~v~~~~~s~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~  282 (392)
                      .+++|++..++....  ...+          ......+++++++..++....+          ..|.+||..+++.+..+
T Consensus       217 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~  296 (355)
T d2bbkh_         217 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF  296 (355)
T ss_dssp             EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE
T ss_pred             eEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEe
Confidence            999999987654211  1111          1233458899999988876543          36999999999988776


Q ss_pred             eccccCcceEEEEEeeCCC--eEEEEeCCCeEEEEEeecCcc
Q 016257          283 KRLHLGTSIALVEFCPTQR--VVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       283 ~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~iw~~~~~~~  322 (392)
                      ..   ...+.+++|+|||+  ++++++.|+.|++||+..++.
T Consensus       297 ~~---~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         297 EM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  335 (355)
T ss_dssp             EE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             cC---CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE
Confidence            43   45688999999998  456677899999999987654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.80  E-value=6e-17  Score=141.52  Aligned_cols=288  Identities=8%  Similarity=-0.070  Sum_probs=190.7

Q ss_pred             eCCCCCeeEEEEcCCCCeEEEEe-----CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe---
Q 016257           60 DESEGDPMTIAVNPSGDDFVCST-----TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG---  131 (392)
Q Consensus        60 ~~h~~~v~~~~~sp~~~~l~~~~-----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---  131 (392)
                      ..+.+++..++++|||+.++...     ..+.+.+||..+++....+..         +....++|+|||++|++++   
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~---------~~~~~~a~SpDG~~l~va~~~~   87 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG---------GFLPNPVAAHSGSEFALASTSF   87 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeC---------CCCccEEEcCCCCEEEEEeecC
Confidence            45788999999999999887642     345699999888876655432         1223699999999998875   


Q ss_pred             -------CCCcEEEEeCCCCceeecccCCCCc-------EEEEEecCCCCeEEEEc--CCCcEEEEECCCCeeeEEEecC
Q 016257          132 -------VDGHLRIMHWPSLRIILDEPKAHKS-------VLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRN  195 (392)
Q Consensus       132 -------~dg~i~i~d~~~~~~~~~~~~~~~~-------i~~i~~~~~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~  195 (392)
                             .++.|.+||..+++.+.....+...       ...+.|+++++.++...  .++.+.+|+....+......  
T Consensus        88 ~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--  165 (373)
T d2madh_          88 SRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS--  165 (373)
T ss_pred             CcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec--
Confidence                   3578999999999887666544432       24578899998766554  45678999988776654433  


Q ss_pred             CCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeeccc------CCCcEEEEECCCCCEEEEEeCCCcEE
Q 016257          196 SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL------RKPASVLSISLDGKYLAMGSKDGDIC  269 (392)
Q Consensus       196 ~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~dg~i~  269 (392)
                         ...++.++|+++..    +++.+.|+.+.+||...++........      ........+++++.++ ..+.++.+.
T Consensus       166 ---~~~~~~~s~~g~~~----~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~  237 (373)
T d2madh_         166 ---SPTCYHIHPGAPST----FYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYSGKIL  237 (373)
T ss_pred             ---cceeEEEecCCCcE----EEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEE-EecCCceEE
Confidence               35678999999863    467888999999999987765544322      1223445666666555 455688899


Q ss_pred             EEecCCceeeeeee-ccc---------cCcceEEEEEeeCCCeEE----------EEeCCCeEEEEEeecCccccceeee
Q 016257          270 VVDVKKMEINHWSK-RLH---------LGTSIALVEFCPTQRVVL----------TASKEWGAMITKLTVPADWKEWQIY  329 (392)
Q Consensus       270 iwd~~~~~~~~~~~-~~~---------~~~~i~~~~~s~~~~~l~----------~~~~dg~i~iw~~~~~~~~~~~~~~  329 (392)
                      +|+..+........ ..+         .......+++++++..++          +...++.+.+|++..++........
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~  317 (373)
T d2madh_         238 QADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG  317 (373)
T ss_pred             EEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCC
Confidence            99988765432221 011         022344566666665544          4455678889998776544322211


Q ss_pred             eeeeeeee--ece--EEEEeeecceeeeecccccccccCCC
Q 016257          330 SLLLALFL--ASA--VVFYIFFENSDSFWNFPVARNQHGGP  366 (392)
Q Consensus       330 ~~~~~~~~--~~~--~~~~~~~d~~i~~W~~~~~~~~~~~p  366 (392)
                      ..+....+  ...  .+++...|+.|++||+.+++.+...+
T Consensus       318 ~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         318 HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             CCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            12222222  112  23456689999999999998765443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=8.4e-17  Score=138.08  Aligned_cols=255  Identities=12%  Similarity=0.105  Sum_probs=169.8

Q ss_pred             CCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe
Q 016257            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (392)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~   82 (392)
                      .++.+.+++|+||++.  |++.+.      .++.|.+|.++......     .......+...+..++|+|||++|++++
T Consensus        35 ~~~~v~~la~spDG~~--L~v~~~------~d~~i~~~~i~~~~~~~-----~~~~~~~~~~~p~~l~~spDg~~l~v~~  101 (333)
T d1ri6a_          35 VPGQVQPMVVSPDKRY--LYVGVR------PEFRVLAYRIAPDDGAL-----TFAAESALPGSLTHISTDHQGQFVFVGS  101 (333)
T ss_dssp             CSSCCCCEEECTTSSE--EEEEET------TTTEEEEEEECTTTCCE-----EEEEEEECSSCCSEEEECTTSSEEEEEE
T ss_pred             CCCCEeEEEEeCCCCE--EEEEEC------CCCeEEEEEEeCCCCcE-----EEeeecccCCCceEEEEcCCCCEEeecc
Confidence            3577899999999866  333322      36779999998654322     1112223456788999999999999887


Q ss_pred             C-CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCCceeec------ccCCC
Q 016257           83 T-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILD------EPKAH  154 (392)
Q Consensus        83 ~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~------~~~~~  154 (392)
                      . ++.+.+|+.............     .+...+.++.++|+++++++++. +..+.+|+.........      .....
T Consensus       102 ~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g  176 (333)
T d1ri6a_         102 YNAGNVSVTRLEDGLPVGVVDVV-----EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG  176 (333)
T ss_dssp             TTTTEEEEEEEETTEEEEEEEEE-----CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT
T ss_pred             cCCCceeeeccccccceeccccc-----CCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecC
Confidence            5 678999998876543333221     24556788999999998888774 45689999866543221      11222


Q ss_pred             CcEEEEEecCCCCeEEEEc-CCCcEEEEECCCCee----eEEEec-----CCCcceEEEEecCCCCcceEEEEEEeCCcc
Q 016257          155 KSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVA----WTFLTR-----NSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (392)
Q Consensus       155 ~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~~~----~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~  224 (392)
                      .....++|++++..++... ..+...+++......    ......     ........++++++++.+    ++....++
T Consensus       177 ~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~----~~~~~~~~  252 (333)
T d1ri6a_         177 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL----YACDRTAS  252 (333)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE----EEEETTTT
T ss_pred             CCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCce----eeecccCC
Confidence            3568899999998876554 556778888654321    122211     112346678999999863    46667788


Q ss_pred             EEEEEeCCCceeeeee---cccCCCcEEEEECCCCCEEEEEeC-CCcEEEEe--cCCceee
Q 016257          225 LLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLAMGSK-DGDICVVD--VKKMEIN  279 (392)
Q Consensus       225 ~i~v~d~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd--~~~~~~~  279 (392)
                      .+.+|++.........   ......+..++|+|||++|++++. ++.|++|+  .+++++.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~  313 (333)
T d1ri6a_         253 LITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH  313 (333)
T ss_dssp             EEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred             eEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence            9999988754433222   223456778999999999877764 58899995  4566653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=2.2e-17  Score=144.20  Aligned_cols=294  Identities=7%  Similarity=-0.123  Sum_probs=185.7

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEe-
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-   82 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~-   82 (392)
                      .++...++..+++++..+......      .+..++|.+|..+.      .....+.++...  .++|+|||+.|++.+ 
T Consensus        19 ~g~~~~~a~~~~~~~~~v~~~~~~------~g~~~~~~~d~~~~------~~~~~~~~~~~~--~~a~spDg~~i~~~~~   84 (368)
T d1mdah_          19 DGSSCDHGPGAISRRSHITLPAYF------AGTTENWVSCAGCG------VTLGHSLGAFLS--LAVAGHSGSDFALAST   84 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTTT------CSSEEEEEEETTTT------EEEEEEEECTTC--EEEECTTSSCEEEEEE
T ss_pred             CCCccccccCCCCcceeEEeeccC------CCcceEEEEeCCCC------cEEEEEeCCCCC--cceECCCCCEEEEEcc
Confidence            567777888888876444443322      44577888887643      333345544443  589999999988754 


Q ss_pred             ---------CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CCCcEEEEeCCCCceeecccC
Q 016257           83 ---------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPK  152 (392)
Q Consensus        83 ---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~  152 (392)
                               .|+.|.+||..+.+....+................++|+|||++|+++. .++.+.+||+.+++.......
T Consensus        85 ~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~  164 (368)
T d1mdah_          85 SFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKS  164 (368)
T ss_dssp             EETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC
T ss_pred             cCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeec
Confidence                     3677999999888766555432222222223345799999999998876 579999999999887765544


Q ss_pred             CCCcEEEEEecC-CCCeEEEEcCCCcEEEEECCCCeeeEEEe-----cCCCcceEEEEecCCCCcceEEEEEEeCCccEE
Q 016257          153 AHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLT-----RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALL  226 (392)
Q Consensus       153 ~~~~i~~i~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i  226 (392)
                      +....    +.| ....++..+.||++.++++..........     ......+....+.+++..     +.  ...+.+
T Consensus       165 ~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~~--~~~~~v  233 (368)
T d1mdah_         165 ASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML-----VW--AVASSI  233 (368)
T ss_dssp             SSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE-----EE--CBSSCC
T ss_pred             cCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEE-----EE--ecCCCE
Confidence            33221    112 23455666777888888776544332221     112223455667777653     22  223445


Q ss_pred             EEEeCCCceeeeeec--c----------cCCCcEEEEECCCCCEEEEEeCC---------CcEEEEecCCceeeeeeecc
Q 016257          227 AVYDISTWNKIGHKR--L----------LRKPASVLSISLDGKYLAMGSKD---------GDICVVDVKKMEINHWSKRL  285 (392)
Q Consensus       227 ~v~d~~~~~~~~~~~--~----------~~~~v~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~  285 (392)
                      .+++...........  .          .......++++|++..++....+         ..|.+||..+++.+..+.. 
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-  312 (368)
T d1mdah_         234 LQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-  312 (368)
T ss_dssp             EEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-
T ss_pred             EEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-
Confidence            566655433221111  0          11223457889998887765432         2599999999998877643 


Q ss_pred             ccCcceEEEEEeeCCCe--EEEEeCCCeEEEEEeecCccccc
Q 016257          286 HLGTSIALVEFCPTQRV--VLTASKEWGAMITKLTVPADWKE  325 (392)
Q Consensus       286 ~~~~~i~~~~~s~~~~~--l~~~~~dg~i~iw~~~~~~~~~~  325 (392)
                        ...+.+++|+|||+.  ++++..|+.|++||...++....
T Consensus       313 --~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~  352 (368)
T d1mdah_         313 --GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS  352 (368)
T ss_dssp             --EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred             --CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence              457889999999973  45667789999999987765433

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=1.2e-17  Score=144.86  Aligned_cols=280  Identities=9%  Similarity=-0.021  Sum_probs=182.9

Q ss_pred             eeEEEEcCCCCeEEEEe-----CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe---------
Q 016257           66 PMTIAVNPSGDDFVCST-----TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG---------  131 (392)
Q Consensus        66 v~~~~~sp~~~~l~~~~-----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---------  131 (392)
                      +.-.+.+||++.+++..     .++.|.+||..+++....+..         +....++|||||++|++.+         
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~---------g~~~~~a~SpDg~~l~v~~~~~~~~~~g   74 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG---------GFLPNPVVADDGSFIAHASTVFSRIARG   74 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE---------CSSCEEEECTTSSCEEEEEEEEEETTEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEEC---------CCCCceEEcCCCCEEEEEeCCCcccccc
Confidence            33345689999887653     355799999998876555432         2334799999999887653         


Q ss_pred             -CCCcEEEEeCCCCceeecccCCC-------CcEEEEEecCCCCeEEEEc--CCCcEEEEECCCCeeeEEEecCCCc---
Q 016257          132 -VDGHLRIMHWPSLRIILDEPKAH-------KSVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDE---  198 (392)
Q Consensus       132 -~dg~i~i~d~~~~~~~~~~~~~~-------~~i~~i~~~~~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~---  198 (392)
                       .|+.|++||+.+++.......+.       .....++|+|++++++.++  .+..+.+|+..+++.+..+..+...   
T Consensus        75 ~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (355)
T d2bbkh_          75 ERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF  154 (355)
T ss_dssp             EEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEe
Confidence             47899999999988765543221       1245689999999887764  4578999999999888877643321   


Q ss_pred             ---ceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCC
Q 016257          199 ---KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (392)
Q Consensus       199 ---~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  275 (392)
                         ....+.+++++..+    .+....++.+.+++......     .+...+....+++++..++.++.++.+++|++..
T Consensus       155 ~~~~~~~~~~~~dg~~~----~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  225 (355)
T d2bbkh_         155 PTAPDTFFMHCRDGSLA----KVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSS  225 (355)
T ss_dssp             EEETTEEEEEETTSCEE----EEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTT
T ss_pred             ecCCcceEEEcCCCCEE----EEEecCCCeEEEEecccccc-----eecceeeeccccCCCCeEEEecCCCeEEEEecCC
Confidence               22346677777652    23344455555555544322     1222344557788888899999999999999988


Q ss_pred             ceeeeee-eccc---------cCcceEEEEEeeCCCeEEEEeCC----------CeEEEEEeecCccccceeeeeeeeee
Q 016257          276 MEINHWS-KRLH---------LGTSIALVEFCPTQRVVLTASKE----------WGAMITKLTVPADWKEWQIYSLLLAL  335 (392)
Q Consensus       276 ~~~~~~~-~~~~---------~~~~i~~~~~s~~~~~l~~~~~d----------g~i~iw~~~~~~~~~~~~~~~~~~~~  335 (392)
                      ++..... ...+         .......+++++++..++....+          ..|.+|+....+....+.....+...
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~  305 (355)
T d2bbkh_         226 GDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSI  305 (355)
T ss_dssp             SSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEE
T ss_pred             CcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEE
Confidence            7643221 1111         01233458899999987766543          36899998877655444333333333


Q ss_pred             eee--ce--EEEEeeecceeeeeccccccccc
Q 016257          336 FLA--SA--VVFYIFFENSDSFWNFPVARNQH  363 (392)
Q Consensus       336 ~~~--~~--~~~~~~~d~~i~~W~~~~~~~~~  363 (392)
                      .+.  ..  .++++..|+.|++||+.+++.+.
T Consensus       306 a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~  337 (355)
T d2bbkh_         306 NVSQDEKPLLYALSTGDKTLYIHDAESGEELR  337 (355)
T ss_dssp             EECCSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             EEcCCCCeEEEEEECCCCEEEEEECCCCCEEE
Confidence            332  22  23344578999999999998654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.67  E-value=1.9e-15  Score=136.17  Aligned_cols=147  Identities=14%  Similarity=0.151  Sum_probs=99.5

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC--
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT--   83 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~--   83 (392)
                      +-..+.|.++++   ++...        ++.+.+|+........   ......+..|...|.++.|||||++|+.++.  
T Consensus        18 ~~~~~~W~~d~~---~~~~~--------~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~   83 (470)
T d2bgra1          18 KLYSLRWISDHE---YLYKQ--------ENNILVFNAEYGNSSV---FLENSTFDEFGHSINDYSISPDGQFILLEYNYV   83 (470)
T ss_dssp             CCCCCEECSSSE---EEEES--------SSCEEEEETTTCCEEE---EECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred             cccCCEeCCCCE---EEEEc--------CCcEEEEECCCCCEEE---EEchhhhhhccCccceeEECCCCCEEEEEECCc
Confidence            445688999884   45422        3346566554322110   0111245566788999999999999998753  


Q ss_pred             -------CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCC--
Q 016257           84 -------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH--  154 (392)
Q Consensus        84 -------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--  154 (392)
                             ++.+.+||+.+++.. .       ...+...+..+.|||||++||... ++.+++|+..+++.......+.  
T Consensus        84 ~~~r~s~~~~~~l~d~~~~~~~-~-------l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~  154 (470)
T d2bgra1          84 KQWRHSYTASYDIYDLNKRQLI-T-------EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKED  154 (470)
T ss_dssp             ECSSSCEEEEEEEEETTTTEEC-C-------SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTT
T ss_pred             ceeeeccCceEEEEECCCCccc-c-------cccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCC
Confidence                   467889999887632 1       123567899999999999999964 7789999998887654332221  


Q ss_pred             ----------------CcEEEEEecCCCCeEEEEcCC
Q 016257          155 ----------------KSVLDMDFSLDSEFLATTSTD  175 (392)
Q Consensus       155 ----------------~~i~~i~~~~~~~~l~~~~~d  175 (392)
                                      +....+.|||||++|+....|
T Consensus       155 ~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         155 IIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             TEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             cccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence                            223557899999999987544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=1.9e-13  Score=118.80  Aligned_cols=253  Identities=9%  Similarity=-0.047  Sum_probs=148.1

Q ss_pred             eecCCCCCcceeEEEeCCCCCCC-CCcCceeEEEEcCCCCccccCCceEEEeeCC-------CCCeeEEEEcCCCCeEEE
Q 016257            9 CGSWIKRPENVNLVVLGKSSRAS-SSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-------EGDPMTIAVNPSGDDFVC   80 (392)
Q Consensus         9 ~~~w~~~~~~~~~~~~g~~~~~~-~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~sp~~~~l~~   80 (392)
                      .++|+||+..+.+.-.+..+... ..++.|.+|+..  +.      .....+..+       ......++|+|||++|++
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~--t~------~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~v  140 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV--TF------LPIADIELPDAPRFSVGPRVHIIGNCASSACLLF  140 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT--TC------CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECC--CC------cEeeeecCCccceecccCCccceEECCCCCEEEE
Confidence            47899998774444333222211 235566666543  21      222222221       123457999999999988


Q ss_pred             Ee-CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceee------cccCC
Q 016257           81 ST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL------DEPKA  153 (392)
Q Consensus        81 ~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~  153 (392)
                      +. .++.+.+||+.+.+..............+.          ....++..+.||.+.++++.......      ....+
T Consensus       141 a~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~  210 (368)
T d1mdah_         141 FLFGSSAAAGLSVPGASDDQLTKSASCFHIHPG----------AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQ  210 (368)
T ss_dssp             EECSSSCEEEEEETTTEEEEEEECSSCCCCEEE----------ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTS
T ss_pred             EeCCCCeEEEEECCCCcEeEEeeccCcceEccC----------CCceEEEEcCCCCEEEEEecCCceeeeeeeccccccc
Confidence            76 568999999998876555432211111111          22344444556666666554332211      11122


Q ss_pred             CCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCC-----------CcceEEEEecCCCCcceEEEEEEeC-
Q 016257          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-----------DEKIELCRFSKDGTKPFLFCTVQRG-  221 (392)
Q Consensus       154 ~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~-  221 (392)
                      ...+....+.+++..+.+.  ++.+++++...+..........           ......+++++++..++.  ....+ 
T Consensus       211 ~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v--~~~~~~  286 (368)
T d1mdah_         211 NCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI--LTVEHS  286 (368)
T ss_dssp             CBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE--EEEECS
T ss_pred             ccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEE--EecCCC
Confidence            2344566777777655543  4667777776554432221100           011345788999886432  11111 


Q ss_pred             -----CccEEEEEeCCCceeeeeecccCCCcEEEEECCCCC-E-EEEEeCCCcEEEEecCCceeeeeeec
Q 016257          222 -----DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK-Y-LAMGSKDGDICVVDVKKMEINHWSKR  284 (392)
Q Consensus       222 -----~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~-l~~~~~dg~i~iwd~~~~~~~~~~~~  284 (392)
                           ....|.+||..+++.+..+.. ...+..++|+|||+ + ++++..|+.|++||..+++.+..+..
T Consensus       287 ~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         287 RSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             SCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             ceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence                 235799999999988776653 45678899999997 3 45666789999999999999887753

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.54  E-value=6.2e-12  Score=108.66  Aligned_cols=274  Identities=10%  Similarity=0.075  Sum_probs=163.8

Q ss_pred             cCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCC
Q 016257           34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAG  113 (392)
Q Consensus        34 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  113 (392)
                      ++.|..+.||.++..+.  .... ........+..|+|+|+++.|+++.. +.+..|.+.............     ...
T Consensus        13 ~~~i~~~~fd~~~~~l~--~~~~-~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~-----~~~   83 (365)
T d1jofa_          13 PGAIFTVQFDDEKLTCK--LIKR-TEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHP-----IGG   83 (365)
T ss_dssp             SCEEEEEEEETTTTEEE--EEEE-EECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEE-----CCS
T ss_pred             CCCEEEEEEcCCCCeEE--Eeee-eeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeec-----CCC
Confidence            34588899987765542  1111 12234556788999999999988765 458888887543322222111     123


Q ss_pred             CeEEEEecCCCCEEEE--Ee-CCCcEEEEeCCCC-------------ce---eec-ccCCCCcEEEEEecCCCCeEEEEc
Q 016257          114 PQKCLSFSVDGSRFAA--GG-VDGHLRIMHWPSL-------------RI---ILD-EPKAHKSVLDMDFSLDSEFLATTS  173 (392)
Q Consensus       114 ~v~~~~~s~~~~~l~~--~~-~dg~i~i~d~~~~-------------~~---~~~-~~~~~~~i~~i~~~~~~~~l~~~~  173 (392)
                      ....+.++++++.++.  +. ..+++..+.+...             +.   ... .......+.++.|+|||+++++++
T Consensus        84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d  163 (365)
T d1jofa_          84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee
Confidence            4567788888875433  22 2355555443211             10   000 011122478999999999888776


Q ss_pred             C-CCcEEEEECCCCeee---EEEe-cCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeee--e---ec--
Q 016257          174 T-DGSARIWKTEDGVAW---TFLT-RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG--H---KR--  241 (392)
Q Consensus       174 ~-d~~i~vwd~~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~--~---~~--  241 (392)
                      . ...|.+|+......+   .... .......+.++|+|+++.+    .++...++.|.+|++...+...  .   ..  
T Consensus       164 ~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~----yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~  239 (365)
T d1jofa_         164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYL----YALMEAGNRICEYVIDPATHMPVYTHHSFPLI  239 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEE----EEEETTTTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred             CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceE----EEeccCCCEEEEEEecCCCceEEEEeeeeccc
Confidence            4 357888876543221   2222 1233468899999999963    3566778999999987643211  1   10  


Q ss_pred             ------------ccCCCcEEEEECCCCCEEEEEeC-C-----CcEEEEecCCce-eeeee---eccccCcceEEEEEee-
Q 016257          242 ------------LLRKPASVLSISLDGKYLAMGSK-D-----GDICVVDVKKME-INHWS---KRLHLGTSIALVEFCP-  298 (392)
Q Consensus       242 ------------~~~~~v~~~~~s~~~~~l~~~~~-d-----g~i~iwd~~~~~-~~~~~---~~~~~~~~i~~~~~s~-  298 (392)
                                  ........+.++|||++|+++.. +     +.|..|++.... .....   ...........++++| 
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~  319 (365)
T d1jofa_         240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW  319 (365)
T ss_dssp             CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT
T ss_pred             cccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCC
Confidence                        01123457899999999988753 1     237777775432 11111   1111134567899998 


Q ss_pred             CCCeEEEE-eCCCeEEEEEeecC
Q 016257          299 TQRVVLTA-SKEWGAMITKLTVP  320 (392)
Q Consensus       299 ~~~~l~~~-~~dg~i~iw~~~~~  320 (392)
                      +|++|+++ ..++.|.+|+++..
T Consensus       320 ~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         320 SDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCEEEEEeCCCCeEEEEEEeCC
Confidence            78977666 46799999998744

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.51  E-value=1.1e-12  Score=117.86  Aligned_cols=140  Identities=11%  Similarity=0.016  Sum_probs=104.2

Q ss_pred             eEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC---------CCcEE
Q 016257           67 MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---------DGHLR  137 (392)
Q Consensus        67 ~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~  137 (392)
                      ..+.|.++++++..  .++.+.+||+.+++....+...  ....+...|.++.|||||++|+.++.         ++.+.
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENS--TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTT--TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchh--hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEE
Confidence            35789999987764  5677999999988754333221  22235678999999999999998753         46789


Q ss_pred             EEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCC-----------------cce
Q 016257          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-----------------EKI  200 (392)
Q Consensus       138 i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-----------------~~v  200 (392)
                      +||+++++. ..+..+...+..+.|||||+.+|... ++.+++|+..+++..+.......                 ...
T Consensus        96 l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~  173 (470)
T d2bgra1          96 IYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (470)
T ss_dssp             EEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEECCCCcc-cccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCc
Confidence            999998765 45667777899999999999999865 67899999988876554322211                 124


Q ss_pred             EEEEecCCCCcc
Q 016257          201 ELCRFSKDGTKP  212 (392)
Q Consensus       201 ~~~~~~~~~~~~  212 (392)
                      ..+.|+|||+++
T Consensus       174 ~~~~wSPDGk~i  185 (470)
T d2bgra1         174 SALWWSPNGTFL  185 (470)
T ss_dssp             BCEEECTTSSEE
T ss_pred             cccEECCCCCcc
Confidence            568899999973

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.49  E-value=1.6e-12  Score=112.72  Aligned_cols=225  Identities=14%  Similarity=0.138  Sum_probs=148.0

Q ss_pred             EEEEeCCCcEEEEeCCCCceeecccC------------------------------CCCcEEEEEecCCCCeEEEE-cCC
Q 016257          127 FAAGGVDGHLRIMHWPSLRIILDEPK------------------------------AHKSVLDMDFSLDSEFLATT-STD  175 (392)
Q Consensus       127 l~~~~~dg~i~i~d~~~~~~~~~~~~------------------------------~~~~i~~i~~~~~~~~l~~~-~~d  175 (392)
                      +++++.+|.|++|++.+++.+.++.-                              |+........+|||++|++. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            56777899999999988876554311                              23334555568999988665 467


Q ss_pred             CcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCc-----------------cEEEEEeCCCceeee
Q 016257          176 GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-----------------ALLAVYDISTWNKIG  238 (392)
Q Consensus       176 ~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d-----------------~~i~v~d~~~~~~~~  238 (392)
                      ..|.++|+++++....+..+....+..++|+|+++..|++   ..+++                 ..+..+|..+.+...
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~---~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~  170 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVF---CNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW  170 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEE---EEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEE---eccCCcccccCcccccccccccceEEeecCccceeeE
Confidence            8899999999999888776656679999999999986642   22222                 234567888777665


Q ss_pred             eecccCCCcEEEEECCCCCEEEEEeCC-----------------------------------------CcEEEEecCCce
Q 016257          239 HKRLLRKPASVLSISLDGKYLAMGSKD-----------------------------------------GDICVVDVKKME  277 (392)
Q Consensus       239 ~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------------------------------------g~i~iwd~~~~~  277 (392)
                      +... ......++++|+|+++++.+.+                                         +.+.+++....+
T Consensus       171 qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~  249 (441)
T d1qnia2         171 QVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE  249 (441)
T ss_dssp             EEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS
T ss_pred             EEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc
Confidence            5544 3456789999999999887643                                         234444444444


Q ss_pred             eeeeeeccccCcceEEEEEeeCCCeEE-EEeCCCeEEEEEeecCccc-----c-ceeeee------eeeeeeeec--eEE
Q 016257          278 INHWSKRLHLGTSIALVEFCPTQRVVL-TASKEWGAMITKLTVPADW-----K-EWQIYS------LLLALFLAS--AVV  342 (392)
Q Consensus       278 ~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~-----~-~~~~~~------~~~~~~~~~--~~~  342 (392)
                      ....+..   ......+.++|||++++ ++..+++|.+|++......     . ...+..      .+....+..  ...
T Consensus       250 v~~~IPv---gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~y  326 (441)
T d1qnia2         250 FTRYIPV---PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAY  326 (441)
T ss_dssp             SEEEECC---BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEE
T ss_pred             eEEEEeC---CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEE
Confidence            4444432   23467899999999765 5667999999998643211     0 111111      111112222  233


Q ss_pred             EEeeecceeeeecccc
Q 016257          343 FYIFFENSDSFWNFPV  358 (392)
Q Consensus       343 ~~~~~d~~i~~W~~~~  358 (392)
                      .+.+.|..|.-|++..
T Consensus       327 ts~~~ds~v~kw~~~~  342 (441)
T d1qnia2         327 TTLFIDSQVCKWNIAD  342 (441)
T ss_dssp             EEETTTTEEEEEEHHH
T ss_pred             EcccccceEEEeccch
Confidence            3445799999999864

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.48  E-value=1.5e-12  Score=112.87  Aligned_cols=238  Identities=10%  Similarity=0.003  Sum_probs=153.5

Q ss_pred             EEEEeCCCeEEEEEEeCCccceeecccc-----------------------CCCCCCCCCeEEEEecCCCCEEEEEe-CC
Q 016257           78 FVCSTTNGGCKLFEVYGGATDINLLAKK-----------------------MPPLQDAGPQKCLSFSVDGSRFAAGG-VD  133 (392)
Q Consensus        78 l~~~~~d~~i~iw~~~~~~~~~~~~~~~-----------------------~~~~~~~~~v~~~~~s~~~~~l~~~~-~d  133 (392)
                      +++++.+|.|.+|++.+.+...++....                       .....|........++|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            5577789999999998877554432210                       00111333455566789999987664 67


Q ss_pred             CcEEEEeCCCCceeecccC-CCCcEEEEEecCCCCe--EEEEcCCC-----------------cEEEEECCCCeeeEEEe
Q 016257          134 GHLRIMHWPSLRIILDEPK-AHKSVLDMDFSLDSEF--LATTSTDG-----------------SARIWKTEDGVAWTFLT  193 (392)
Q Consensus       134 g~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~~~~~--l~~~~~d~-----------------~i~vwd~~~~~~~~~~~  193 (392)
                      +.|.++|+++++....+.- ....+..++|+|+++.  ++..+++.                 .+..+|..+.+...++.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            8899999999987654432 3457899999999985  43333321                 23557888887777766


Q ss_pred             cCCCcceEEEEecCCCCcceEEEE------------------------------------EEeCCccEEEEEeCCCceee
Q 016257          194 RNSDEKIELCRFSKDGTKPFLFCT------------------------------------VQRGDKALLAVYDISTWNKI  237 (392)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~~~~~~~------------------------------------~~~~~d~~i~v~d~~~~~~~  237 (392)
                      ...  ....++++|+|++.+..+.                                    ...+.++.+.+++....+.+
T Consensus       174 v~~--~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~  251 (441)
T d1qnia2         174 VDG--NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT  251 (441)
T ss_dssp             ESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred             cCC--CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE
Confidence            443  4788999999997432110                                    00111334445544444444


Q ss_pred             eeecccCCCcEEEEECCCCCEEEE-EeCCCcEEEEecCCceee--------eee-eccccCcceEEEEEeeCCCeEEEEe
Q 016257          238 GHKRLLRKPASVLSISLDGKYLAM-GSKDGDICVVDVKKMEIN--------HWS-KRLHLGTSIALVEFCPTQRVVLTAS  307 (392)
Q Consensus       238 ~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~--------~~~-~~~~~~~~i~~~~~s~~~~~l~~~~  307 (392)
                      ..+.... ....+.++|||+++++ +..+++|.+||+++.+..        ..+ ......-.....+|+++|..+.+..
T Consensus       252 ~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~  330 (441)
T d1qnia2         252 RYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLF  330 (441)
T ss_dssp             EEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEET
T ss_pred             EEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEccc
Confidence            4444433 3567999999998755 567899999998763311        000 0000022345568999999899999


Q ss_pred             CCCeEEEEEee
Q 016257          308 KEWGAMITKLT  318 (392)
Q Consensus       308 ~dg~i~iw~~~  318 (392)
                      .|..|..|++.
T Consensus       331 ~ds~v~kw~~~  341 (441)
T d1qnia2         331 IDSQVCKWNIA  341 (441)
T ss_dssp             TTTEEEEEEHH
T ss_pred             ccceEEEeccc
Confidence            99999999985

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=7.2e-11  Score=97.31  Aligned_cols=237  Identities=18%  Similarity=0.173  Sum_probs=141.2

Q ss_pred             eeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC-Ce--EEEEEEeCCccceeeccccCCCCCCCC
Q 016257           37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-GG--CKLFEVYGGATDINLLAKKMPPLQDAG  113 (392)
Q Consensus        37 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d-~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~  113 (392)
                      .+||..|.++...       ..+..+...+...+|||||+.||..... +.  +.+.+......  ....      .+..
T Consensus        19 ~~l~i~d~dG~~~-------~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~   83 (269)
T d2hqsa1          19 YELRVSDYDGYNQ-------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVA------SFPR   83 (269)
T ss_dssp             EEEEEEETTSCSC-------EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EEEE------CCSS
T ss_pred             EEEEEEcCCCCCc-------EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce--eEEe------eeec
Confidence            4677777655332       1233346778899999999999876443 32  44444333332  1111      1456


Q ss_pred             CeEEEEecCCCCEEEEEeC-CCcEEE--EeCCCCceeecccCCCCcEEEEEecCCCCeEEE-EcCCCc--EEEEECCCCe
Q 016257          114 PQKCLSFSVDGSRFAAGGV-DGHLRI--MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLAT-TSTDGS--ARIWKTEDGV  187 (392)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~-dg~i~i--~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~d~~--i~vwd~~~~~  187 (392)
                      ......|+|+|+.++.... ++...+  +........ .............++++++.++. ...++.  |.+.++..+.
T Consensus        84 ~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~  162 (269)
T d2hqsa1          84 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA  162 (269)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             ccccceecCCCCeeeEeeecCCccceeecccccccce-eeeeccccccccccccccccceecccccCCceEeeeeccccc
Confidence            7789999999998887654 333333  332232222 23333344555667777765444 444554  5555655543


Q ss_pred             eeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC--
Q 016257          188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD--  265 (392)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--  265 (392)
                      ... +.. .........|+|++..++.  .........+.+.|...+..  .............|||||+.|+..+..  
T Consensus       163 ~~~-~~~-~~~~~~~~~~spdg~~~~~--~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~  236 (269)
T d2hqsa1         163 PQR-ITW-EGSQNQDADVSSDGKFMVM--VSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGM  236 (269)
T ss_dssp             CEE-CCC-SSSEEEEEEECTTSSEEEE--EEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETT
T ss_pred             cee-eec-ccccccccccccccceeEE--EeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCC
Confidence            322 222 3345778899999997321  22223334566666665443  333345567788999999998866543  


Q ss_pred             -CcEEEEecCCceeeeeeeccccCcceEEEEEee
Q 016257          266 -GDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (392)
Q Consensus       266 -g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~  298 (392)
                       ..|+++++..+...+..  .. .+.+...+|||
T Consensus       237 ~~~l~~~~~dg~~~~~lt--~~-~g~~~~p~WSP  267 (269)
T d2hqsa1         237 GSVLNLVSTDGRFKARLP--AT-DGQVKFPAWSP  267 (269)
T ss_dssp             EEEEEEEETTSCCEEECC--CS-SSEEEEEEECC
T ss_pred             CcEEEEEECCCCCEEEEe--CC-CCcEEeEEeCC
Confidence             46899999887765543  23 56788899998

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.42  E-value=1.3e-10  Score=95.25  Aligned_cols=239  Identities=8%  Similarity=0.004  Sum_probs=153.8

Q ss_pred             CCCeeEEEEcCCCCeEEEE-eCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC
Q 016257           63 EGDPMTIAVNPSGDDFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~  141 (392)
                      .-.+..++++++|+..++. ...+.+..++...........       ........++++++++++++....+.+++++-
T Consensus        13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~   85 (260)
T d1rwia_          13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPF-------NGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAG   85 (260)
T ss_dssp             CCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCC-------CSCCSCCCEEECTTCCEEEEETTTEEEEECTT
T ss_pred             cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEecc-------CCccCceEEEEcCCCCEEEeeeeeceeeeeee
Confidence            3467899999999966654 455667666554433211111       11234578899999987777666666666655


Q ss_pred             CCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeC
Q 016257          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (392)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (392)
                      .+...... ........+++++++++++++-..+..+..++...... .............+++++++..     .++..
T Consensus        86 ~~~~~~~~-~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~~-----~v~~~  158 (260)
T d1rwia_          86 SNNQTVLP-FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-TVLPFTGLNDPDGVAVDNSGNV-----YVTDT  158 (260)
T ss_dssp             CSCCEECC-CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC-EECCCCSCCSCCEEEECTTCCE-----EEEEG
T ss_pred             ccceeeee-eeeeeecccccccccceeEeecccccccccccccccee-eeeeecccCCcceeeecCCCCE-----eeecc
Confidence            54444322 22334678999999998887776677777777654332 2222222234678999999874     45667


Q ss_pred             CccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCC
Q 016257          222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (392)
Q Consensus       222 ~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  301 (392)
                      .++.|..+|.............-.....+++.++|+++++....+.|..++........ ..... -.....|+++++|.
T Consensus       159 ~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~-~~~~~-~~~P~~i~~d~~g~  236 (260)
T d1rwia_         159 DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTG-LNTPLAVAVDSDRT  236 (260)
T ss_dssp             GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEE-CCCCS-CCCEEEEEECTTCC
T ss_pred             ccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEE-EccCC-CCCeEEEEEeCCCC
Confidence            77889999988654433332334556889999999988888788889888876543222 21222 34678999999998


Q ss_pred             eEEEEeCCCeEEEEEe
Q 016257          302 VVLTASKEWGAMITKL  317 (392)
Q Consensus       302 ~l~~~~~dg~i~iw~~  317 (392)
                      ++++-..+++|+..+.
T Consensus       237 l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         237 VYVADRGNDRVVKLTS  252 (260)
T ss_dssp             EEEEEGGGTEEEEECC
T ss_pred             EEEEECCCCEEEEEeC
Confidence            7777666666654443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.39  E-value=1.2e-10  Score=97.72  Aligned_cols=229  Identities=12%  Similarity=0.053  Sum_probs=152.5

Q ss_pred             CeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 016257           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL  144 (392)
Q Consensus        65 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~  144 (392)
                      .+..++++|||+++++...+++|..++....  ...+.       .....+.+++|++||+++++...++.+..++....
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~-------~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~   99 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHA-------TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS   99 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEE-------ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEE-------cCCCCcceEEEcCCCCeEEEecCCceEEEEEeccc
Confidence            5788999999999999888998877764332  11211       13457899999999999888888888888876543


Q ss_pred             cee-ec--ccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecC---------CCcceEEEEecCCCCcc
Q 016257          145 RII-LD--EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN---------SDEKIELCRFSKDGTKP  212 (392)
Q Consensus       145 ~~~-~~--~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~  212 (392)
                      ... ..  ..........+++.++++++++.+.++.+..++...+.........         .......+.++.  ..+
T Consensus       100 ~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l  177 (302)
T d2p4oa1         100 DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFL  177 (302)
T ss_dssp             TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEE
T ss_pred             ccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--Cce
Confidence            221 11  1223346889999999999988888899999998776543332211         111234555543  331


Q ss_pred             eEEEEEEeCCccEEEEEeCCCceeeeee--cccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcc
Q 016257          213 FLFCTVQRGDKALLAVYDISTWNKIGHK--RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS  290 (392)
Q Consensus       213 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  290 (392)
                          .++....+.|..++..........  .........++++++|++.++...++.|..++.............. -..
T Consensus       178 ----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~-~~~  252 (302)
T d2p4oa1         178 ----YVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQG-VIG  252 (302)
T ss_dssp             ----EEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGT-CTT
T ss_pred             ----eeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCC-CCC
Confidence                466777889999987754332211  1123345679999999988888888999999876543222111112 456


Q ss_pred             eEEEEE---eeCCCeEEEEeCC
Q 016257          291 IALVEF---CPTQRVVLTASKE  309 (392)
Q Consensus       291 i~~~~~---s~~~~~l~~~~~d  309 (392)
                      .++++|   ++|++.|+.++..
T Consensus       253 pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         253 STAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EEEEEECCSTTTTTEEEEEECT
T ss_pred             ceEEEEcCCCCCCCEEEEECCC
Confidence            899999   6678877766544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.39  E-value=2.2e-09  Score=88.77  Aligned_cols=244  Identities=11%  Similarity=0.054  Sum_probs=159.8

Q ss_pred             CeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCC-CEEEEE-eCCCcEEEEeCC
Q 016257           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAG-GVDGHLRIMHWP  142 (392)
Q Consensus        65 ~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~-~~dg~i~i~d~~  142 (392)
                      .+..++++|+++.+++-..++.|++||.+ ++....+.... ...........+++.++. ..+++. +.++.|..++. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-  100 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG-KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-  100 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS-SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccC-CCcccccccccccccccccccceeccCCccccccccc-
Confidence            57899999999987776778889999854 33333221111 111112234556665543 344433 34456777775 


Q ss_pred             CCceeeccc-CCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec-CCCcceEEEEecCCCCcceEEEEEEe
Q 016257          143 SLRIILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQR  220 (392)
Q Consensus       143 ~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (392)
                      .++....+. ........+++.++++.+++....+.+.+++. +++.+..+.. ........+++.+++..     .++.
T Consensus       101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i-----~v~d  174 (279)
T d1q7fa_         101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEI-----FISD  174 (279)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEE-----EEEE
T ss_pred             cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeE-----Eeee
Confidence            444444332 22346788999999998888887788888886 4556665532 22345788899998874     5677


Q ss_pred             CCccEEEEEeCCCceeeeeec--ccCCCcEEEEECCCCCEEEEEeC-CCcEEEEecCCceeeeeeeccccCcceEEEEEe
Q 016257          221 GDKALLAVYDISTWNKIGHKR--LLRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (392)
Q Consensus       221 ~~d~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  297 (392)
                      ...+.|++||... +.+..+.  ........+++.++|+++++-.. ++.|.+|+. +++.+..+...-.......+++.
T Consensus       175 ~~~~~V~~~d~~G-~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~  252 (279)
T d1q7fa_         175 NRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM  252 (279)
T ss_dssp             GGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE
T ss_pred             ccccceeeeecCC-ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEe
Confidence            7788999999764 4444442  23345788999999997777544 456999984 56665554322213468899999


Q ss_pred             eCCCeEEEEeCCCeEEEEEeecC
Q 016257          298 PTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       298 ~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      |+|.+++ ++.++.|++|+....
T Consensus       253 ~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         253 DDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             TTTEEEE-EETTTEEEEEECSCC
T ss_pred             CCCcEEE-EeCCCeEEEEEeeee
Confidence            9997554 567899999998744

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.38  E-value=1.4e-09  Score=91.34  Aligned_cols=250  Identities=12%  Similarity=0.040  Sum_probs=157.2

Q ss_pred             CCeeEEEEcCCCCeEEEEeC-------CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcE
Q 016257           64 GDPMTIAVNPSGDDFVCSTT-------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~-------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  136 (392)
                      ..+..++|.|+|+++++...       +++|..||..++...........   ...+....++|.++++.++++...+.+
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~---~~~g~P~Gl~~~~dg~~l~vad~~~~i   94 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN---GYGGIPAGCQCDRDANQLFVADMRLGL   94 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEET---TEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccc---cCCCcceeEEEeCCCCEEEEEECCCeE
Confidence            44678899999987766432       45677777766543222111000   012345789999999988888777778


Q ss_pred             EEEeCCCCceeecccCCCC----cEEEEEecCCCCeEEEEcC---------------CCcEEEEECCCCeeeEEEecCCC
Q 016257          137 RIMHWPSLRIILDEPKAHK----SVLDMDFSLDSEFLATTST---------------DGSARIWKTEDGVAWTFLTRNSD  197 (392)
Q Consensus       137 ~i~d~~~~~~~~~~~~~~~----~i~~i~~~~~~~~l~~~~~---------------d~~i~vwd~~~~~~~~~~~~~~~  197 (392)
                      ...+.+............+    ....+++.++|++.++-..               +|.|..++. .++...... ...
T Consensus        95 ~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~-~~~  172 (314)
T d1pjxa_          95 LVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDT-AFQ  172 (314)
T ss_dssp             EEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEE-EES
T ss_pred             EEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeC-Ccc
Confidence            8888766543322222111    3678999999988776432               233444443 233322222 111


Q ss_pred             cceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeee------ecc-cCCCcEEEEECCCCCEEEEEeCCCcEEE
Q 016257          198 EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH------KRL-LRKPASVLSISLDGKYLAMGSKDGDICV  270 (392)
Q Consensus       198 ~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~------~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i  270 (392)
                       ....++|+|++......+.++.+..+.|..||+.....+..      +.. .......+++..+|++.++....+.|.+
T Consensus       173 -~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~  251 (314)
T d1pjxa_         173 -FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             -SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             -eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence             35688999876522222246667888999998764322211      111 1223457999999998888777899999


Q ss_pred             EecCCceeeeeeeccccCcceEEEEEeeCCC-eEEEEeCCCeEEEEEeecCc
Q 016257          271 VDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLTVPA  321 (392)
Q Consensus       271 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~  321 (392)
                      ||.++++....+. .. ...+++++|.|+++ ++++.+.+|.|...++..+.
T Consensus       252 ~dp~~g~~~~~i~-~p-~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         252 FGPDGGQPKMRIR-CP-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             ECTTCBSCSEEEE-CS-SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             EeCCCCEEEEEEE-CC-CCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence            9998887665553 33 45789999999997 45566677888777776543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.31  E-value=4.6e-09  Score=90.30  Aligned_cols=254  Identities=9%  Similarity=0.069  Sum_probs=142.3

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeE--EEEe-
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF--VCST-   82 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l--~~~~-   82 (392)
                      ++.-++++|+++. ..++         ..+.+..|.++.++...      ..........+..+.++++++.+  +++. 
T Consensus        41 ~~s~la~s~d~~~-ly~~---------~~~~~~~~~i~~~~~~~------~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~  104 (365)
T d1jofa_          41 PISWMTFDHERKN-IYGA---------AMKKWSSFAVKSPTEIV------HEASHPIGGHPRANDADTNTRAIFLLAAKQ  104 (365)
T ss_dssp             CCSEEEECTTSSE-EEEE---------EBTEEEEEEEEETTEEE------EEEEEECCSSGGGGCTTSCCEEEEEEECSS
T ss_pred             CCCEEEEcCCCCE-EEEE---------eCCcEEEEEEeCCCCeE------EEeeecCCCCcEEEEECCCCCEEEEEEecC
Confidence            4455777877654 2222         13346777777554221      11111123457788889998844  3332 


Q ss_pred             CCCeEEEEEEeCCccceeecc----------ccCCCCCCCCCeEEEEecCCCCEEEEEeC-CCcEEEEeCCCCceee---
Q 016257           83 TNGGCKLFEVYGGATDINLLA----------KKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIIL---  148 (392)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~---  148 (392)
                      ..+.+..+.+...........          ......+....+.++.|+|||++++++.. ...|.+|+........   
T Consensus       105 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~  184 (365)
T d1jofa_         105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG  184 (365)
T ss_dssp             TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred             CCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecc
Confidence            234555554432211100000          00001112345789999999999888764 4578888765432211   


Q ss_pred             --cccCCCCcEEEEEecCCCCeEEEEc-CCCcEEEEECCCCeeeEE-----Eec-------------CCCcceEEEEecC
Q 016257          149 --DEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTF-----LTR-------------NSDEKIELCRFSK  207 (392)
Q Consensus       149 --~~~~~~~~i~~i~~~~~~~~l~~~~-~d~~i~vwd~~~~~~~~~-----~~~-------------~~~~~v~~~~~~~  207 (392)
                        ...........++|+|+++++++.. .+++|.+|++..++....     ...             ........+.++|
T Consensus       185 ~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp  264 (365)
T d1jofa_         185 SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF  264 (365)
T ss_dssp             EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT
T ss_pred             ceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECC
Confidence              1122334788999999999876554 578899999876543221     110             0112356789999


Q ss_pred             CCCcceEEEEEEe---CCccEEEEEeCCCceeee------eecccCCCcEEEEECC-CCCEEEEEe-CCCcEEEEecCCc
Q 016257          208 DGTKPFLFCTVQR---GDKALLAVYDISTWNKIG------HKRLLRKPASVLSISL-DGKYLAMGS-KDGDICVVDVKKM  276 (392)
Q Consensus       208 ~~~~~~~~~~~~~---~~d~~i~v~d~~~~~~~~------~~~~~~~~v~~~~~s~-~~~~l~~~~-~dg~i~iwd~~~~  276 (392)
                      +|+++|.  ...+   .....|..|++.....+.      ...........++++| +|++|+++. .++.|.+|+++..
T Consensus       265 dG~~lyv--snr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         265 SGKYMFA--SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TSSEEEE--EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCEEEE--EcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            9997431  1111   122347777765432221      1112234567799998 799887775 6688999987654


Q ss_pred             e
Q 016257          277 E  277 (392)
Q Consensus       277 ~  277 (392)
                      .
T Consensus       343 ~  343 (365)
T d1jofa_         343 F  343 (365)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.24  E-value=3.8e-09  Score=86.28  Aligned_cols=196  Identities=10%  Similarity=0.023  Sum_probs=128.1

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~  143 (392)
                      ..+..++++++++.+++....+.+++++-.+...   ...     .........+++.++++++++-..+..+..++...
T Consensus        57 ~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~---~~~-----~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~  128 (260)
T d1rwia_          57 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT---VLP-----FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS  128 (260)
T ss_dssp             CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE---ECC-----CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTC
T ss_pred             cCceEEEEcCCCCEEEeeeeeceeeeeeecccee---eee-----eeeeeecccccccccceeEeecccccccccccccc
Confidence            4578899999998777765555555544332221   111     11234678999999998877766667777777655


Q ss_pred             CceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCc
Q 016257          144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (392)
Q Consensus       144 ~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (392)
                      ................++++++++.+++...++.|..++.+.... ..+....-.....+++.+++..     .++....
T Consensus       129 ~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~p~gi~~d~~g~l-----~vsd~~~  202 (260)
T d1rwia_         129 KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGTV-----YVTEHNT  202 (260)
T ss_dssp             SSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEEEECTTCCE-----EEEETTT
T ss_pred             ceeeeeeecccCCcceeeecCCCCEeeecccccccccccccccee-eeeeccccCCCccceeeeeeee-----eeeecCC
Confidence            443332223334567899999999888888888899999865433 3332222235788999999874     5666677


Q ss_pred             cEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEec
Q 016257          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (392)
Q Consensus       224 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  273 (392)
                      +.|..++.............-.....++++++|+++++-..+++|+.++.
T Consensus       203 ~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         203 NQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             TEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             CEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            88888887654322221222245678999999988777666676765554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=7.8e-09  Score=84.75  Aligned_cols=224  Identities=12%  Similarity=0.072  Sum_probs=136.3

Q ss_pred             CceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC
Q 016257            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (392)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~   83 (392)
                      ..++.+-+||||+++++++.....        ...+|..+..+..       ...+..+.+......|+|+|+.++....
T Consensus        38 ~~~~~sP~wSPDGk~IAf~~~~~~--------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~spdg~~i~~~~~  102 (269)
T d2hqsa1          38 PQPLMSPAWSPDGSKLAYVTFESG--------RSALVIQTLANGA-------VRQVASFPRHNGAPAFSPDGSKLAFALS  102 (269)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTS--------SCEEEEEETTTCC-------EEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred             CCceeeeEECCCCCEEEEEEeecc--------CcceeeeecccCc-------eeEEeeeecccccceecCCCCeeeEeee
Confidence            456778899999998666653322        1235555543322       2345556788899999999998886553


Q ss_pred             -CCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CCCc--EEEEeCCCCceeecccCCCCcEEE
Q 016257           84 -NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGH--LRIMHWPSLRIILDEPKAHKSVLD  159 (392)
Q Consensus        84 -d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~i~~  159 (392)
                       ++...++.............      ..........+++++..++..+ .++.  |...++..+... ...........
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~  175 (269)
T d2hqsa1         103 KTGSLNLYVMDLASGQIRQVT------DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD  175 (269)
T ss_dssp             TTSSCEEEEEETTTCCEEECC------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEE
T ss_pred             cCCccceeecccccccceeee------eccccccccccccccccceecccccCCceEeeeecccccce-eeecccccccc
Confidence             44444444443332111111      1234455667778777655443 4454  555566555443 23344456778


Q ss_pred             EEecCCCCeEEEEcCCC-c--EEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCcee
Q 016257          160 MDFSLDSEFLATTSTDG-S--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (392)
Q Consensus       160 i~~~~~~~~l~~~~~d~-~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~  236 (392)
                      ..|+|+++.++..+.++ .  +.+.+...+..  ..... ........|+|||+.+++  ...-+....|.++++..+..
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~-~~~~~~p~~SPDG~~i~f--~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSS-TFLDETPSLAPNGTMVIY--SSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCC-SSSCEEEEECTTSSEEEE--EEEETTEEEEEEEETTSCCE
T ss_pred             cccccccceeEEEeecCCceeeeEeecccccc--eEeec-CccccceEECCCCCEEEE--EEcCCCCcEEEEEECCCCCE
Confidence            89999999888766543 3  44455544433  22222 235678899999997432  33445567899999987655


Q ss_pred             eeeecccCCCcEEEEECCC
Q 016257          237 IGHKRLLRKPASVLSISLD  255 (392)
Q Consensus       237 ~~~~~~~~~~v~~~~~s~~  255 (392)
                      . .+......+...+|||-
T Consensus       251 ~-~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         251 A-RLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             E-ECCCSSSEEEEEEECCC
T ss_pred             E-EEeCCCCcEEeEEeCCC
Confidence            4 45555667888999983

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.22  E-value=5.8e-09  Score=87.56  Aligned_cols=202  Identities=9%  Similarity=0.088  Sum_probs=126.2

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC-----------
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----------  132 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------  132 (392)
                      +....+.|.++++.++++...+.+...+.......  ........ ..-...+.+++.++|++.++-..           
T Consensus        71 g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~--~~~~~~~g-~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~  147 (314)
T d1pjxa_          71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEE--IAKKDSEG-RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS  147 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEE--CCSBCTTS-CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred             CcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEE--EEeccccc-cccCCCcEEEECCCCCEEEecCccCcccccccce
Confidence            34778999999998888877777887776544321  11111000 00123578999999987776321           


Q ss_pred             ----CCcEEEEeCCCCceeecccCCCCcEEEEEecCCCC-----eEEEEcCCCcEEEEECCCCeeeE------EEecCCC
Q 016257          133 ----DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-----FLATTSTDGSARIWKTEDGVAWT------FLTRNSD  197 (392)
Q Consensus       133 ----dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~-----~l~~~~~d~~i~vwd~~~~~~~~------~~~~~~~  197 (392)
                          .|.|..++. .++.. .....-..-..++|+|+++     ++++-+..+.|..||+.....+.      .+.....
T Consensus       148 ~~~~~G~v~~~~~-dg~~~-~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~  225 (314)
T d1pjxa_         148 MQEKFGSIYCFTT-DGQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE  225 (314)
T ss_dssp             TSSSCEEEEEECT-TSCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred             eccCCceEEEEee-cCcee-EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccc
Confidence                233444443 22222 2222223456889998764     44455677889998876432222      1111222


Q ss_pred             cceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEE-EEEeCCCcEEEEecCC
Q 016257          198 EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL-AMGSKDGDICVVDVKK  275 (392)
Q Consensus       198 ~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~  275 (392)
                      .....+++..+|+.     .++....+.|.+||.+.++....+.......++++|.|+++.| ++.+.+|.|..+++..
T Consensus       226 ~~pdGiavD~~Gnl-----yVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         226 GGADGMDFDEDNNL-----LVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CEEEEEEEBTTCCE-----EEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             ccceeeEEecCCcE-----EEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            24568999999984     3455567899999998877666666656678999999999755 5556678888888754

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.22  E-value=6.8e-08  Score=81.15  Aligned_cols=231  Identities=13%  Similarity=0.010  Sum_probs=145.1

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC----CcEEE
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRI  138 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i  138 (392)
                      ...+..++|.++|++.++-...+.|+.|+..+.+.......       .......+++++||+++++...+    +.+..
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~-------~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~  111 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS-------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA  111 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC-------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeC-------CCCCeeEEEECCCCCEEEEecCCCccceeEEE
Confidence            44567899999998777766788888887665543222211       23467899999999877765432    33555


Q ss_pred             EeCCCCceeecccC--CCCcEEEEEecCCCCeEEEEcCC------CcEEEEECCCCeeeEEEecCCCcceEEEEecCCCC
Q 016257          139 MHWPSLRIILDEPK--AHKSVLDMDFSLDSEFLATTSTD------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (392)
Q Consensus       139 ~d~~~~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (392)
                      .+............  .......+++.++|++.++....      +.+..++... +.+..+..... ....++|+|+++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~~-~pnGia~s~dg~  189 (319)
T d2dg1a1         112 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNIS-VANGIALSTDEK  189 (319)
T ss_dssp             ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEES-SEEEEEECTTSS
T ss_pred             EcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEeeccc-eeeeeeeccccc
Confidence            55554443322221  22357889999999876664321      2355555433 33333322222 467899999998


Q ss_pred             cceEEEEEEeCCccEEEEEeCCCce-ee---e----eecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeee
Q 016257          211 KPFLFCTVQRGDKALLAVYDISTWN-KI---G----HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (392)
Q Consensus       211 ~~~~~~~~~~~~d~~i~v~d~~~~~-~~---~----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  282 (392)
                      .+    .++.+..+.|..||+.... ..   .    ...........+++.++|++.++....+.|.+||. .++.+..+
T Consensus       190 ~l----yvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i  264 (319)
T d2dg1a1         190 VL----WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQI  264 (319)
T ss_dssp             EE----EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEE
T ss_pred             eE----EEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEE
Confidence            63    3556678899999876321 11   0    01111123457999999998888888999999995 67766655


Q ss_pred             ec-----cccCcceEEEEEeeCCCeEEEEeC
Q 016257          283 KR-----LHLGTSIALVEFCPTQRVVLTASK  308 (392)
Q Consensus       283 ~~-----~~~~~~i~~~~~s~~~~~l~~~~~  308 (392)
                      ..     .+ ...+++++|.+++..+++...
T Consensus       265 ~~P~~~~~~-~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         265 LIPGRDEGH-MLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             ECTTGGGTC-SCBCCEEEECTTSCEEEEEEE
T ss_pred             eCCCcCCCc-CceeeeEEEeCCCCEEEEEcC
Confidence            32     12 335789999988776665543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=7.7e-09  Score=91.70  Aligned_cols=301  Identities=11%  Similarity=0.017  Sum_probs=156.9

Q ss_pred             eeeeecCCCCCcceeEEEeCCC-CCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC
Q 016257            6 TVTCGSWIKRPENVNLVVLGKS-SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~-~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d   84 (392)
                      ++....|+||+..+ ++..... .......+.+.++.+....  ..    ...........+....|||||+.||... +
T Consensus        62 ~~~~~~~SpD~~~v-l~~~~~~~~~r~s~~~~~~i~d~~~~~--~~----~l~~~~~~~~~l~~~~wSPDG~~iafv~-~  133 (465)
T d1xfda1          62 RAIRYEISPDREYA-LFSYNVEPIYQHSYTGYYVLSKIPHGD--PQ----SLDPPEVSNAKLQYAGWGPKGQQLIFIF-E  133 (465)
T ss_dssp             TCSEEEECTTSSEE-EEEESCCCCSSSCCCSEEEEEESSSCC--CE----ECCCTTCCSCCCSBCCBCSSTTCEEEEE-T
T ss_pred             ccceeEECCCCCeE-EEEEcccceeEeeccccEEEEEccCCc--ee----eccCccCCccccceeeeccCCceEEEEe-c
Confidence            45566789998763 3332211 1111223444455444221  10    0011122344566789999999999875 5


Q ss_pred             CeEEEEEEeCCccceeeccccCCCC-----------CCCCCeEEEEecCCCCEEEEEeCC-C------------------
Q 016257           85 GGCKLFEVYGGATDINLLAKKMPPL-----------QDAGPQKCLSFSVDGSRFAAGGVD-G------------------  134 (392)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~~~~~d-g------------------  134 (392)
                      +.|.+.+..++.............+           +..+.-.++.|||||++||....| .                  
T Consensus       134 ~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~  213 (465)
T d1xfda1         134 NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTV  213 (465)
T ss_dssp             TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCC
T ss_pred             ceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeeccccccccccee
Confidence            5688877765543222211110000           001223578899999999986422 2                  


Q ss_pred             ---------------cEEEEeCCCCceeecccC------CCCcEEEEEecCCCCeEEEEc-CC---CcEEEEECCCCeee
Q 016257          135 ---------------HLRIMHWPSLRIILDEPK------AHKSVLDMDFSLDSEFLATTS-TD---GSARIWKTEDGVAW  189 (392)
Q Consensus       135 ---------------~i~i~d~~~~~~~~~~~~------~~~~i~~i~~~~~~~~l~~~~-~d---~~i~vwd~~~~~~~  189 (392)
                                     .+.++|++++........      ...-+..+.|+|++++++... ++   ..+.++|..+++..
T Consensus       214 ~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~  293 (465)
T d1xfda1         214 KPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT  293 (465)
T ss_dssp             EEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred             eeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEE
Confidence                           244555544332211111      111367889999988655532 22   25888999998876


Q ss_pred             EEEecCCCcce----EEEEecCCCCcceEEEEEEeCC--ccEEEEEeCC------CceeeeeecccCCCcEEE-EECCCC
Q 016257          190 TFLTRNSDEKI----ELCRFSKDGTKPFLFCTVQRGD--KALLAVYDIS------TWNKIGHKRLLRKPASVL-SISLDG  256 (392)
Q Consensus       190 ~~~~~~~~~~v----~~~~~~~~~~~~~~~~~~~~~~--d~~i~v~d~~------~~~~~~~~~~~~~~v~~~-~~s~~~  256 (392)
                      ..+.......|    ....|+|+|..+++  +.....  -+.+..+++.      .++.+..+....-.|..+ +|++++
T Consensus       294 ~~~~e~~~~wv~~~~~~p~~~~dg~~~~f--i~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~  371 (465)
T d1xfda1         294 KKHEDESEAWLHRQNEEPVFSKDGRKFFF--IRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKG  371 (465)
T ss_dssp             EEEEEECSSCCCCCCCCCEECTTSCSEEE--EEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTT
T ss_pred             EEEEEcCCceEeccCCceeEccCCCeeEE--EEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCC
Confidence            65544333322    34689999987432  222222  2334444332      223333344334556664 688888


Q ss_pred             CEEEE-EeCCC--cEEEE--ecCCceeeeeee--ccccCcceEEEEEeeCCCeEEEEeCC---CeEEEEEe
Q 016257          257 KYLAM-GSKDG--DICVV--DVKKMEINHWSK--RLHLGTSIALVEFCPTQRVVLTASKE---WGAMITKL  317 (392)
Q Consensus       257 ~~l~~-~~~dg--~i~iw--d~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iw~~  317 (392)
                      +.|+. +..++  .-++|  ++..+.....+.  ... .....++.|||++++++..+..   -.+.+++.
T Consensus       372 ~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~-~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~  441 (465)
T d1xfda1         372 NKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVE-NCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNT  441 (465)
T ss_dssp             TEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSS-SCCCCEEEECTTSSEEEEECCSSSSCCEEEEET
T ss_pred             CEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCC-CCCEEEEEECCCCCEEEEEeecCCCCeEEEEEC
Confidence            77654 43332  23344  444443322221  122 4467799999999988755543   34444443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.18  E-value=1.5e-08  Score=84.72  Aligned_cols=229  Identities=9%  Similarity=-0.006  Sum_probs=149.0

Q ss_pred             eeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCC
Q 016257            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (392)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~   85 (392)
                      .+..+++.||+   .++++....+        +||.+++++..        ..+......+.+++|+|+|+++++...++
T Consensus        29 ~~e~iAv~pdG---~l~vt~~~~~--------~I~~i~p~g~~--------~~~~~~~~~~~gla~~~dG~l~v~~~~~~   89 (302)
T d2p4oa1          29 FLENLASAPDG---TIFVTNHEVG--------EIVSITPDGNQ--------QIHATVEGKVSGLAFTSNGDLVATGWNAD   89 (302)
T ss_dssp             CEEEEEECTTS---CEEEEETTTT--------EEEEECTTCCE--------EEEEECSSEEEEEEECTTSCEEEEEECTT
T ss_pred             CcCCEEECCCC---CEEEEeCCCC--------EEEEEeCCCCE--------EEEEcCCCCcceEEEcCCCCeEEEecCCc
Confidence            46678999997   4555444322        37888866532        12334567899999999999988888888


Q ss_pred             eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeeccc----------CCCC
Q 016257           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP----------KAHK  155 (392)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------~~~~  155 (392)
                      .+..++..............    ........+++.++++++++.+.++.+..++...+.......          ....
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~----~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (302)
T d2p4oa1          90 SIPVVSLVKSDGTVETLLTL----PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP  165 (302)
T ss_dssp             SCEEEEEECTTSCEEEEEEC----TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC
T ss_pred             eEEEEEecccccceeecccc----CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccc
Confidence            89888887654332222111    134567899999999888888888888888887664322111          1112


Q ss_pred             cEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeE---EEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCC
Q 016257          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT---FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (392)
Q Consensus       156 ~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~  232 (392)
                      ....+.++. +.++++.+..+.|..++........   .+..  ......++++++|..     .++...++.|..++..
T Consensus       166 ~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~pdgia~d~dG~l-----~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         166 AANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNL-----YGATHIYNSVVRIAPD  237 (302)
T ss_dssp             SEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCE-----EEECBTTCCEEEECTT
T ss_pred             ccccccccC-CceeeecCCCCeEEeccccccccccccccccC--CCCCcceEECCCCCE-----EEEEcCCCcEEEECCC
Confidence            456676664 3455566777888888876543221   1111  224577999999984     4555667889999876


Q ss_pred             Ccee-eeeecccCCCcEEEEE---CCCCCEEEEEeCC
Q 016257          233 TWNK-IGHKRLLRKPASVLSI---SLDGKYLAMGSKD  265 (392)
Q Consensus       233 ~~~~-~~~~~~~~~~v~~~~~---s~~~~~l~~~~~d  265 (392)
                      .... +......-...++++|   ++|++.|++++..
T Consensus       238 G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         238 RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            4332 2222333356789999   6788888876654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.1e-08  Score=88.79  Aligned_cols=247  Identities=9%  Similarity=0.018  Sum_probs=139.9

Q ss_pred             CCeeEEEEcCCCCeEEEEe---------CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCC
Q 016257           64 GDPMTIAVNPSGDDFVCST---------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  134 (392)
                      -.+....||||+++++...         ..+.+.++|+.++.... +...    ......+....|||||+.||... ++
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~-l~~~----~~~~~~l~~~~wSPDG~~iafv~-~~  134 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS-LDPP----EVSNAKLQYAGWGPKGQQLIFIF-EN  134 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE-CCCT----TCCSCCCSBCCBCSSTTCEEEEE-TT
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee-ccCc----cCCccccceeeeccCCceEEEEe-cc
Confidence            4677889999999988764         34678899988776321 1111    11234566789999999998876 67


Q ss_pred             cEEEEeCCCCceeecccCCC-CcE-----------------EEEEecCCCCeEEEEcCC-Cc------------------
Q 016257          135 HLRIMHWPSLRIILDEPKAH-KSV-----------------LDMDFSLDSEFLATTSTD-GS------------------  177 (392)
Q Consensus       135 ~i~i~d~~~~~~~~~~~~~~-~~i-----------------~~i~~~~~~~~l~~~~~d-~~------------------  177 (392)
                      .|.+.+..++...+...... +.|                 ..+-|||||++||....| ..                  
T Consensus       135 nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~  214 (465)
T d1xfda1         135 NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVK  214 (465)
T ss_dssp             EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCE
T ss_pred             eEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceee
Confidence            78888887665543332221 112                 467799999999976422 22                  


Q ss_pred             ---------------EEEEECCCCeeeEEEec-----CCCcceEEEEecCCCCcceEEEEEE-eCCccEEEEEeCCCcee
Q 016257          178 ---------------ARIWKTEDGVAWTFLTR-----NSDEKIELCRFSKDGTKPFLFCTVQ-RGDKALLAVYDISTWNK  236 (392)
Q Consensus       178 ---------------i~vwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~-~~~d~~i~v~d~~~~~~  236 (392)
                                     +.++|+..+........     .....+..+.|+|+++. ++. ... ......+.++|..+++.
T Consensus       215 ~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~-~~~-~~nR~q~~~~i~~~d~~tg~~  292 (465)
T d1xfda1         215 PYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKV-AVT-WLNRAQNVSILTLCDATTGVC  292 (465)
T ss_dssp             EEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEE-EEE-EEETTSCEEEEEEEETTTCCE
T ss_pred             eeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeE-EEE-EEccccccceEEEEcCCCCcE
Confidence                           34444443322211111     11223677899998863 211 112 22334688899998876


Q ss_pred             eeeeccc-CCC----cEEEEECCCCCEEEE---EeCCC--cEEEEecC------CceeeeeeeccccCcceEEE-EEeeC
Q 016257          237 IGHKRLL-RKP----ASVLSISLDGKYLAM---GSKDG--DICVVDVK------KMEINHWSKRLHLGTSIALV-EFCPT  299 (392)
Q Consensus       237 ~~~~~~~-~~~----v~~~~~s~~~~~l~~---~~~dg--~i~iwd~~------~~~~~~~~~~~~~~~~i~~~-~~s~~  299 (392)
                      ....... ...    -....|+|||+.++.   .-.+|  .+..+.+.      .++....+..+  .-.|..+ .|+++
T Consensus       293 ~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G--~w~V~~i~~~d~~  370 (465)
T d1xfda1         293 TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEK  370 (465)
T ss_dssp             EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETT
T ss_pred             EEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccC--CceEEEEEEEcCC
Confidence            5443322 221    234689999975432   22333  34444332      22233333222  4456664 68888


Q ss_pred             CCeEE-EEeCC--CeEEEEEeecC
Q 016257          300 QRVVL-TASKE--WGAMITKLTVP  320 (392)
Q Consensus       300 ~~~l~-~~~~d--g~i~iw~~~~~  320 (392)
                      ++.|. ++..+  +.-.+|.++..
T Consensus       371 ~~~vyF~a~~~~p~~~hly~v~l~  394 (465)
T d1xfda1         371 GNKIYFLSTEDLPRRRQLYSANTV  394 (465)
T ss_dssp             TTEEEEEESSSCTTCCEEEEECSS
T ss_pred             CCEEEEEEeCCCCCceEEEEEECC
Confidence            77554 45443  24456766543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.98  E-value=2.5e-06  Score=70.35  Aligned_cols=219  Identities=12%  Similarity=0.044  Sum_probs=144.0

Q ss_pred             eEEEEcCCCCeEEEEe-CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 016257           67 MTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR  145 (392)
Q Consensus        67 ~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  145 (392)
                      .+..|++....|+... ..+.|.-||..+++... ..        ....+.++++.++|.++++ +.+ .+.++|..+++
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~--------~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~   89 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA--------LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGV   89 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE--------CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCC
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-EE--------CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccce
Confidence            4677887555555443 66788888887765321 11        2346789999999876655 444 58899998887


Q ss_pred             eeecc--cCC--CCcEEEEEecCCCCeEEEEcC----CCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEE
Q 016257          146 IILDE--PKA--HKSVLDMDFSLDSEFLATTST----DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (392)
Q Consensus       146 ~~~~~--~~~--~~~i~~i~~~~~~~~l~~~~~----d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (392)
                      .....  ...  ...+.++.+.|+|++.++...    .+.-.+|.+..++........ . ....++|+++++.+    .
T Consensus        90 ~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~-~-~~Ng~~~s~d~~~l----~  163 (295)
T d2ghsa1          90 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI-S-IPNSICFSPDGTTG----Y  163 (295)
T ss_dssp             EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE-S-SEEEEEECTTSCEE----E
T ss_pred             eeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc-C-CcceeeecCCCceE----E
Confidence            54321  111  125889999999987666432    234567777677654444322 2 46789999999863    4


Q ss_pred             EEeCCccEEEEEeCCCce------e--eeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCc
Q 016257          218 VQRGDKALLAVYDISTWN------K--IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT  289 (392)
Q Consensus       218 ~~~~~d~~i~v~d~~~~~------~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  289 (392)
                      ++.+..+.|..|++....      .  .............+++..+|++.++.-..+.|..||. .++.+..+.. . ..
T Consensus       164 ~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~l-P-~~  240 (295)
T d2ghsa1         164 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV-P-GK  240 (295)
T ss_dssp             EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC-S-CS
T ss_pred             EeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecC-C-CC
Confidence            666778889999875311      1  1112223445678999999998887777888999995 5676666633 2 45


Q ss_pred             ceEEEEEe-eCCCeEEE
Q 016257          290 SIALVEFC-PTQRVVLT  305 (392)
Q Consensus       290 ~i~~~~~s-~~~~~l~~  305 (392)
                      .+++++|- +|.+.|+.
T Consensus       241 ~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         241 QTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             BEEEEEEESTTSCEEEE
T ss_pred             ceEEEEEeCCCCCEEEE
Confidence            78999996 56665543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.96  E-value=1.7e-06  Score=70.88  Aligned_cols=234  Identities=7%  Similarity=-0.007  Sum_probs=148.9

Q ss_pred             CeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCC------CCcEEEEEecCCC-CeEEE-EcCCCcEEEEECCC
Q 016257          114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA------HKSVLDMDFSLDS-EFLAT-TSTDGSARIWKTED  185 (392)
Q Consensus       114 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~i~~i~~~~~~-~~l~~-~~~d~~i~vwd~~~  185 (392)
                      ....++++++|+.+++-..++.|++||.+ ++.+..+...      ......+++.++. ..+++ .+.++.|..++. .
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence            45899999999887776778889999964 5544433211      1134556666544 34443 334567777775 5


Q ss_pred             CeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeee--cccCCCcEEEEECCCCCEEEEEe
Q 016257          186 GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK--RLLRKPASVLSISLDGKYLAMGS  263 (392)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~  263 (392)
                      ++....+..........+++.+++..     .++....+.+.+++... +.+..+  ..+......+++.++++.+++..
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i-----~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~  175 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRI-----IVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDN  175 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCE-----EEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             ccceeecCCCcccccceeccccCCcE-----EEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeec
Confidence            66666665444446788999999885     56666778888888764 444443  23345678899999999888888


Q ss_pred             CCCcEEEEecCCceeeeeee-ccccCcceEEEEEeeCCCeEEEEeC-CCeEEEEEeecCccccceeee---eeeeeeee-
Q 016257          264 KDGDICVVDVKKMEINHWSK-RLHLGTSIALVEFCPTQRVVLTASK-EWGAMITKLTVPADWKEWQIY---SLLLALFL-  337 (392)
Q Consensus       264 ~dg~i~iwd~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~-  337 (392)
                      ..+.|++||... +.+..+. .+. ......+++.++|+++++-.. ++.|.+++.. ++-...+...   ..+.+..+ 
T Consensus       176 ~~~~V~~~d~~G-~~~~~~g~~g~-~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~~~~~p~~vav~  252 (279)
T d1q7fa_         176 RAHCVKVFNYEG-QYLRQIGGEGI-TNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALM  252 (279)
T ss_dssp             GGTEEEEEETTC-CEEEEESCTTT-SCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEE
T ss_pred             cccceeeeecCC-ceeeeeccccc-ccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEEEEEeCCCCCCCEeEEEEe
Confidence            889999999754 4444332 233 456789999999997776544 4468887643 2111111110   01222222 


Q ss_pred             eceEEEEeeecceeeeecccc
Q 016257          338 ASAVVFYIFFENSDSFWNFPV  358 (392)
Q Consensus       338 ~~~~~~~~~~d~~i~~W~~~~  358 (392)
                      ..+.++.+..++.|++|....
T Consensus       253 ~dG~l~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         253 DDGSVVLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             TTTEEEEEETTTEEEEEECSC
T ss_pred             CCCcEEEEeCCCeEEEEEeee
Confidence            233555566788899998764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.90  E-value=3e-06  Score=70.82  Aligned_cols=231  Identities=16%  Similarity=0.151  Sum_probs=133.1

Q ss_pred             eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC--
Q 016257            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN--   84 (392)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d--   84 (392)
                      +-.++|.+++ +  |..+...      .+  +|+.+++++...      ...+......+..++++++|+++++...+  
T Consensus        42 lEG~~~D~~G-~--Ly~~D~~------~g--~I~ri~p~g~~~------~~~~~~~~~~p~gla~~~dG~l~va~~~~~~  104 (319)
T d2dg1a1          42 LEGLNFDRQG-Q--LFLLDVF------EG--NIFKINPETKEI------KRPFVSHKANPAAIKIHKDGRLFVCYLGDFK  104 (319)
T ss_dssp             EEEEEECTTS-C--EEEEETT------TC--EEEEECTTTCCE------EEEEECSSSSEEEEEECTTSCEEEEECTTSS
T ss_pred             cEeCEECCCC-C--EEEEECC------CC--EEEEEECCCCeE------EEEEeCCCCCeeEEEECCCCCEEEEecCCCc
Confidence            4577888876 2  3332222      12  367777665322      22233445678999999999877765432  


Q ss_pred             CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC------CCcEEEEeCCCCceeecccCCCCcEE
Q 016257           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV------DGHLRIMHWPSLRIILDEPKAHKSVL  158 (392)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~  158 (392)
                      ....++.+.............   .........+++.++|++.++...      .+.+..++..... +......-....
T Consensus       105 ~~~~i~~~~~~~~~~~~~~~~---~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pn  180 (319)
T d2dg1a1         105 STGGIFAATENGDNLQDIIED---LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVAN  180 (319)
T ss_dssp             SCCEEEEECTTSCSCEEEECS---SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEE
T ss_pred             cceeEEEEcCCCceeeeeccC---CCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceee
Confidence            233444443322111111111   112345788999999986665322      1235555543322 222222223467


Q ss_pred             EEEecCCCCeEE-EEcCCCcEEEEECCCC-eeeEE------EecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEe
Q 016257          159 DMDFSLDSEFLA-TTSTDGSARIWKTEDG-VAWTF------LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (392)
Q Consensus       159 ~i~~~~~~~~l~-~~~~d~~i~vwd~~~~-~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d  230 (392)
                      .++|+|+++.|+ +-+..+.|..|++... .....      ...........+++.++|..     .++....+.|.++|
T Consensus       181 Gia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l-----~Va~~~~g~V~~~~  255 (319)
T d2dg1a1         181 GIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL-----YVAMYGQGRVLVFN  255 (319)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCE-----EEEEETTTEEEEEC
T ss_pred             eeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCE-----EEEEcCCCEEEEEC
Confidence            899999998664 4456789999997642 11111      11111223578999999984     35556778999999


Q ss_pred             CCCceeeeeeccc------CCCcEEEEECCCCCEEEEEeC
Q 016257          231 ISTWNKIGHKRLL------RKPASVLSISLDGKYLAMGSK  264 (392)
Q Consensus       231 ~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~  264 (392)
                      . .++.+..+...      ...+++++|.+++..+++.+.
T Consensus       256 p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         256 K-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             T-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             C-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            6 57766655432      235779999998877766554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.78  E-value=6e-07  Score=73.49  Aligned_cols=227  Identities=12%  Similarity=0.037  Sum_probs=121.6

Q ss_pred             EEcCC--CCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC-C-----CcEEEEeC
Q 016257           70 AVNPS--GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-D-----GHLRIMHW  141 (392)
Q Consensus        70 ~~sp~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d-----g~i~i~d~  141 (392)
                      ..+||  |+.++..+ ++.|.+.|+.+++.. .+..       +.+.+...+|||||++|+.... +     ..|.+++.
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~-------~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~   75 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVS-------NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNG   75 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEEC-------SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEET
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEec-------CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEe
Confidence            35788  99988764 456888888877632 2221       3456788999999999986542 2     24777787


Q ss_pred             CCCceeecccCC------CCcEEEEEecCCCCeEEEEcCC------CcEEEEECCCCeeeEEEecCCCcceEEEEecCCC
Q 016257          142 PSLRIILDEPKA------HKSVLDMDFSLDSEFLATTSTD------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (392)
Q Consensus       142 ~~~~~~~~~~~~------~~~i~~i~~~~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (392)
                      .+++........      ........|+|+++.|+.....      ..+...+...+..... .   ...... .+.+++
T Consensus        76 ~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~-~~~~~~  150 (281)
T d1k32a2          76 ENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL-N---LGPATH-ILFADG  150 (281)
T ss_dssp             TTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC-C---SCSCSE-EEEETT
T ss_pred             cCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe-c---CCccce-eeecCC
Confidence            777654322211      1235678899999998875432      2244555544433221 1   111222 233333


Q ss_pred             CcceEEEEEEeCCc-----------cEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC--CcEEEEecCCc
Q 016257          210 TKPFLFCTVQRGDK-----------ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD--GDICVVDVKKM  276 (392)
Q Consensus       210 ~~~~~~~~~~~~~d-----------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~iwd~~~~  276 (392)
                      ...    +......           .............. .............++++. .+.....+  ..|.++|+.++
T Consensus       151 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~  224 (281)
T d1k32a2         151 RRV----IGRNTFELPHWKGYRGGTRGKIWIEVNSGAFK-KIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGK  224 (281)
T ss_dssp             EEE----EEESCSCCTTSTTCCSTTCCEEEEEEETTEEE-EEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSC
T ss_pred             CeE----EEeeccccceeeeeccCCcceeeeecccccee-eccCCccccceeeeeccc-cceecccccccceEEEeCCCC
Confidence            321    1111110           11111111111221 222233445556666653 22223222  35788888877


Q ss_pred             eeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCc
Q 016257          277 EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (392)
Q Consensus       277 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~  321 (392)
                      +...... .. ..  ....|+|||+.|+... ++.++++++..++
T Consensus       225 ~~~~lt~-~~-~~--~~~~~SpDG~~I~f~~-~~~l~~~d~~~g~  264 (281)
T d1k32a2         225 DLRKHTS-FT-DY--YPRHLNTDGRRILFSK-GGSIYIFNPDTEK  264 (281)
T ss_dssp             SCEECCC-CC-SS--CEEEEEESSSCEEEEE-TTEEEEECTTTCC
T ss_pred             ceEEeec-CC-Cc--ccccCcCCCCEEEEEe-CCEEEEEECCCCC
Confidence            6654432 22 22  2346899999887644 5677777776544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.77  E-value=9.1e-07  Score=72.35  Aligned_cols=238  Identities=9%  Similarity=0.054  Sum_probs=122.8

Q ss_pred             cCCCC--CcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeC-CC--
Q 016257           11 SWIKR--PENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NG--   85 (392)
Q Consensus        11 ~w~~~--~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~-d~--   85 (392)
                      ..+|+  ++++.++.          ++  .||.++.++...       ..|..+.+.+...+|||||+.||.... ++  
T Consensus         5 ~~sPdi~G~~v~f~~----------~~--dl~~~d~~~g~~-------~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~   65 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC----------CD--DLWEHDLKSGST-------RKIVSNLGVINNARFFPDGRKIAIRVMRGSSL   65 (281)
T ss_dssp             CEEEEEETTEEEEEE----------TT--EEEEEETTTCCE-------EEEECSSSEEEEEEECTTSSEEEEEEEESTTC
T ss_pred             ccCCCCCCCEEEEEe----------CC--cEEEEECCCCCE-------EEEecCCCcccCEEECCCCCEEEEEEeeCCCC
Confidence            45788  77644433          11  277776554322       335667788999999999999986532 22  


Q ss_pred             ---eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC------CcEEEEeCCCCceeecccCCCCc
Q 016257           86 ---GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHWPSLRIILDEPKAHKS  156 (392)
Q Consensus        86 ---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~  156 (392)
                         .|.+++..+++.. .+..................|+|||+.|+.....      ..+...+...+.......   ..
T Consensus        66 ~~~~i~~~~~~~g~~~-~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  141 (281)
T d1k32a2          66 NTADLYFYNGENGEIK-RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL---GP  141 (281)
T ss_dssp             CEEEEEEEETTTTEEE-ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS---CS
T ss_pred             CceEEEEEEecCCceE-EeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecC---Cc
Confidence               2555554444321 1111000000112345788999999998875432      224455555444332211   12


Q ss_pred             EEEEEecCCCC-eEEEEcCCC-----------cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCcc
Q 016257          157 VLDMDFSLDSE-FLATTSTDG-----------SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (392)
Q Consensus       157 i~~i~~~~~~~-~l~~~~~d~-----------~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~  224 (392)
                      .... +.+++. .++....+.           ................. .. .......++++...    .........
T Consensus       142 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~----~~~~~~~~~  214 (281)
T d1k32a2         142 ATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVD-MS-THVSSPVIVGHRIY----FITDIDGFG  214 (281)
T ss_dssp             CSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEEC-CS-SCCEEEEEETTEEE----EEECTTSSC
T ss_pred             ccee-eecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccC-Cc-cccceeeeeccccc----eeccccccc
Confidence            2223 334443 333332211           11222222222222221 11 23445555554321    122233456


Q ss_pred             EEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeee
Q 016257          225 LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW  281 (392)
Q Consensus       225 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  281 (392)
                      .|.++|+.+.+.........  .....|+|||+.|+... ++.|+++|+.+++....
T Consensus       215 ~l~~~d~~g~~~~~lt~~~~--~~~~~~SpDG~~I~f~~-~~~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         215 QIYSTDLDGKDLRKHTSFTD--YYPRHLNTDGRRILFSK-GGSIYIFNPDTEKIEKI  268 (281)
T ss_dssp             EEEEEETTSCSCEECCCCCS--SCEEEEEESSSCEEEEE-TTEEEEECTTTCCEEEC
T ss_pred             ceEEEeCCCCceEEeecCCC--cccccCcCCCCEEEEEe-CCEEEEEECCCCCEEEe
Confidence            78899998766543222222  23346899999888754 68899999999886654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.56  E-value=2.6e-05  Score=64.05  Aligned_cols=189  Identities=12%  Similarity=0.019  Sum_probs=119.9

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC----CCcEEE
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----DGHLRI  138 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~i  138 (392)
                      ...+.++++.++|+++++ +.+| +.++|..+++.......   ........++.+.+.|+|++.++...    .+.-.+
T Consensus        58 ~~~~~~i~~~~dg~l~va-~~~g-l~~~d~~tg~~~~l~~~---~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l  132 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIA-SDDG-LFLRDTATGVLTLHAEL---ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSI  132 (295)
T ss_dssp             SSCEEEEEEEETTEEEEE-ETTE-EEEEETTTCCEEEEECS---STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEE
T ss_pred             CCCcEEEEEecCCCEEEE-EeCc-cEEeecccceeeEEeee---ecCCCcccceeeEECCCCCEEEEeccccccccceeE
Confidence            457889999999876665 5565 88999887764222111   11112235789999999987665432    234566


Q ss_pred             EeCCCCceeecccCCCCcEEEEEecCCCCeEE-EEcCCCcEEEEECCCC------eeeEEE-ecCCCcceEEEEecCCCC
Q 016257          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDG------VAWTFL-TRNSDEKIELCRFSKDGT  210 (392)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~-~~~~d~~i~vwd~~~~------~~~~~~-~~~~~~~v~~~~~~~~~~  210 (392)
                      |.+..++... ..........++|+++++.++ +-+..+.|..+++...      +..... ..........+++..+|.
T Consensus       133 ~~~~~g~~~~-~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn  211 (295)
T d2ghsa1         133 YHVAKGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH  211 (295)
T ss_dssp             EEEETTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC
T ss_pred             eeecCCcEEE-EeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC
Confidence            6666665433 222233567899999998655 4556788998887421      111111 112234578899999998


Q ss_pred             cceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEEC-CCCCEEEEEe
Q 016257          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS-LDGKYLAMGS  263 (392)
Q Consensus       211 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~  263 (392)
                      .     .++.-..+.|..||. .++.+..+......+++++|- ||.+.|++.+
T Consensus       212 l-----Wva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         212 I-----WNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             E-----EEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             E-----EeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence            3     233335678999995 577777777666678999995 6766665443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.47  E-value=1.1e-05  Score=67.82  Aligned_cols=194  Identities=14%  Similarity=0.133  Sum_probs=120.6

Q ss_pred             EEEecC---CCCeEEEEc-CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCC------------
Q 016257          159 DMDFSL---DSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD------------  222 (392)
Q Consensus       159 ~i~~~~---~~~~l~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------------  222 (392)
                      .+.+..   ||+++++.. .+..|.+.|+++.+..+.+..+....+..+...++++..|+   +..++            
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV---~~~~e~~vP~pndg~~l  165 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYV---FCNGEDETPLVNDGTNM  165 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEE---EEEECSCEESSCSSSST
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEE---EccCccccccCCCCccc
Confidence            455543   788877765 67889999999999888776665566888888777766554   33222            


Q ss_pred             ------ccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCC---------------cEEEE----------
Q 016257          223 ------KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG---------------DICVV----------  271 (392)
Q Consensus       223 ------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---------------~i~iw----------  271 (392)
                            .+.+...|..+.+...+... ......++++++|+++++.+.+.               .+.++          
T Consensus       166 ~d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~  244 (459)
T d1fwxa2         166 EDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA  244 (459)
T ss_dssp             TCGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred             cchhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhh
Confidence                  14467889988877655543 34566789999999999877431               13333          


Q ss_pred             -------------ecCCc---eeeeeeeccccCcceEEEEEeeCCCeEEEEe-CCCeEEEEEeecCccc-------c-ce
Q 016257          272 -------------DVKKM---EINHWSKRLHLGTSIALVEFCPTQRVVLTAS-KEWGAMITKLTVPADW-------K-EW  326 (392)
Q Consensus       272 -------------d~~~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~-------~-~~  326 (392)
                                   |.+..   .....+..   ......+.++|||+++++++ .+.++.+.|++.-...       + +.
T Consensus       245 ~Gk~~eingV~VVD~~~~~~~~v~~yIPV---pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~  321 (459)
T d1fwxa2         245 AGDYQELNGVKVVDGRKEASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV  321 (459)
T ss_dssp             HTCSEEETTEEEEECSGG--CSSEEEEEE---ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGE
T ss_pred             cCCcEEeCCceeecccccCCcceeEEEec---CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccE
Confidence                         33321   11112211   23456789999999887665 5899999999632111       1 11


Q ss_pred             ----eeeeeeeeeeeeceEEEE--eeecceeeeeccccc
Q 016257          327 ----QIYSLLLALFLASAVVFY--IFFENSDSFWNFPVA  359 (392)
Q Consensus       327 ----~~~~~~~~~~~~~~~~~~--~~~d~~i~~W~~~~~  359 (392)
                          .+..-+........-.++  .+.|..|.-|++...
T Consensus       322 ~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~  360 (459)
T d1fwxa2         322 VAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA  360 (459)
T ss_dssp             EECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred             EeecccCcCccccccCCCceEEEEeeccceEEEEecchh
Confidence                111222222222222233  347999999998654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.26  E-value=0.0006  Score=54.51  Aligned_cols=234  Identities=8%  Similarity=-0.114  Sum_probs=135.5

Q ss_pred             CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CCCcEEEEeCCCCceeecccCCC
Q 016257           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPKAH  154 (392)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~  154 (392)
                      .+|+.+.. +.|+-.+++............  ...+...+..++|.+..+.|+... .++.|+..++.............
T Consensus         2 ~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~--~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~   78 (263)
T d1npea_           2 THLLFAQT-GKIERLPLERNTMKKTEAKAF--LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL   78 (263)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEE--EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred             CEEEEeCC-CeEEEEECCCccccccccccc--cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecc
Confidence            34555433 357777775443211100000  001223467789988777777654 45778888887654433333333


Q ss_pred             CcEEEEEecCCCCeEE-EEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCC
Q 016257          155 KSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (392)
Q Consensus       155 ~~i~~i~~~~~~~~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~  233 (392)
                      ..+.+++++.-++.|+ +-...+.|.+.++..... ..+.......+..++++|....+|.  .-.+.....|.--++..
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~p~~l~vdp~~g~ly~--t~~~~~~~~I~r~~~dG  155 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYW--TDWNRDNPKIETSHMDG  155 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEE--EECCSSSCEEEEEETTS
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceE-EEEecccccCCcEEEEecccCcEEE--eecCCCCcEEEEecCCC
Confidence            5688999987666665 445567899999875544 3333333346889999998886432  22233344566667765


Q ss_pred             ceeeeeecccCCCcEEEEECCCCCEEEEE-eCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEe-CCCe
Q 016257          234 WNKIGHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS-KEWG  311 (392)
Q Consensus       234 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~  311 (392)
                      ..........-.....+++.+.++.|+.. ...+.|...|+........+ .+.  ....++++.  +..|.... ..+.
T Consensus       156 ~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~-~~~--~~P~~lav~--~~~lYwtd~~~~~  230 (263)
T d1npea_         156 TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL-EGL--QYPFAVTSY--GKNLYYTDWKTNS  230 (263)
T ss_dssp             CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE-ECC--CSEEEEEEE--TTEEEEEETTTTE
T ss_pred             CCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEE-CCC--CCcEEEEEE--CCEEEEEECCCCE
Confidence            44332222223456789999888777665 45678999999776554433 222  234577775  34455444 4566


Q ss_pred             EEEEEeecC
Q 016257          312 AMITKLTVP  320 (392)
Q Consensus       312 i~iw~~~~~  320 (392)
                      |...+...+
T Consensus       231 I~~~~~~~g  239 (263)
T d1npea_         231 VIAMDLAIS  239 (263)
T ss_dssp             EEEEETTTT
T ss_pred             EEEEECCCC
Confidence            655555433

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=0.00065  Score=54.31  Aligned_cols=222  Identities=8%  Similarity=-0.042  Sum_probs=136.8

Q ss_pred             CCCCeeEEEEcCCCCeEEEEe-CCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEE-eCCCcEEEE
Q 016257           62 SEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIM  139 (392)
Q Consensus        62 h~~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~  139 (392)
                      +...+.+++|.+..+.|+... .++.|+..++..... ..+...      ....+.++++..-+..|+.+ ...+.|.+.
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-~~v~~~------~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~  106 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQ------DLGSPEGIALDHLGRTIFWTDSQLDRIEVA  106 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECT------TCCCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-EEEEEe------ccccccEEEEeccCCeEEEeccCCCEEEEE
Confidence            345688899998888777654 456677777765442 222211      12467889998766666655 456789999


Q ss_pred             eCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCC-Cc--EEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEE
Q 016257          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-GS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC  216 (392)
Q Consensus       140 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-~~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (392)
                      ++..................++++|...+++..... +.  |.--++..... ..+....-.....+++.+.+..+|   
T Consensus       107 ~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-~~i~~~~~~~P~glaiD~~~~~lY---  182 (263)
T d1npea_         107 KMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQDNLGLPNGLTFDAFSSQLC---  182 (263)
T ss_dssp             ETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECTTCSCEEEEEEETTTTEEE---
T ss_pred             ecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc-eeeeeecccccceEEEeecCcEEE---
Confidence            987554332222333568899999977777654332 23  44445543333 333322233568999998887632   


Q ss_pred             EEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEE-eCCCcEEEEecCCceeeeeeeccccCcceEEEE
Q 016257          217 TVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEINHWSKRLHLGTSIALVE  295 (392)
Q Consensus       217 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  295 (392)
                       .+....+.|...|+............. ....+++.  +..|+.. ...+.|...|..+++....+.... ......++
T Consensus       183 -w~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~-~~~~~gi~  257 (263)
T d1npea_         183 -WVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGIT  257 (263)
T ss_dssp             -EEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEE
T ss_pred             -EEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCC-CCCcceEE
Confidence             445667899999998655433333333 33577775  4455444 466889999999888776654333 44555666


Q ss_pred             EeeC
Q 016257          296 FCPT  299 (392)
Q Consensus       296 ~s~~  299 (392)
                      ..++
T Consensus       258 v~~~  261 (263)
T d1npea_         258 IALS  261 (263)
T ss_dssp             EECS
T ss_pred             EeCC
Confidence            5543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.08  E-value=0.00049  Score=61.80  Aligned_cols=250  Identities=9%  Similarity=0.038  Sum_probs=140.8

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceeecccCCCC-cEEEEEecC--CCCeEEEEc------CCCcEEEEECCCCeeeEEEec
Q 016257          124 GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSL--DSEFLATTS------TDGSARIWKTEDGVAWTFLTR  194 (392)
Q Consensus       124 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~i~~~~--~~~~l~~~~------~d~~i~vwd~~~~~~~~~~~~  194 (392)
                      +..++.++.|+.+.-.|.++++.......... .-..+.-.|  -+..++.+.      .+|.|+-+|+++++.+-++..
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence            34678888999999999999987654422111 000111111  123444444      367899999999998876643


Q ss_pred             CCC------------------------------------cce-EEEEecCCCCcceEEEEEEeC--------------Cc
Q 016257          195 NSD------------------------------------EKI-ELCRFSKDGTKPFLFCTVQRG--------------DK  223 (392)
Q Consensus       195 ~~~------------------------------------~~v-~~~~~~~~~~~~~~~~~~~~~--------------~d  223 (392)
                      ...                                    ..+ ...++.+.....+   +.++.              ..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y---~~tg~~~p~~~~~r~g~n~~s  271 (571)
T d2ad6a1         195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFY---YGSGNPAPWNETMRPGDNKWT  271 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE---EECCCCSCSCGGGSCSCCTTT
T ss_pred             cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeee---eecccccCccccccccccccc
Confidence            210                                    001 1234455544311   22221              13


Q ss_pred             cEEEEEeCCCceeeeeecccCC---------CcEEEEECCCCC---EEEEEeCCCcEEEEecCCceeeeeeecccc----
Q 016257          224 ALLAVYDISTWNKIGHKRLLRK---------PASVLSISLDGK---YLAMGSKDGDICVVDVKKMEINHWSKRLHL----  287 (392)
Q Consensus       224 ~~i~v~d~~~~~~~~~~~~~~~---------~v~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----  287 (392)
                      ..+.-.|.++++.+-.++....         ......+..+++   .++.++.+|.++++|..+++.+........    
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~  351 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccc
Confidence            5688889999988755543221         112222223443   467788999999999999987632211000    


Q ss_pred             -------C------------------------cc--eEEEEEeeCCCeEEEEeCCC------------------------
Q 016257          288 -------G------------------------TS--IALVEFCPTQRVVLTASKEW------------------------  310 (392)
Q Consensus       288 -------~------------------------~~--i~~~~~s~~~~~l~~~~~dg------------------------  310 (392)
                             .                        +.  =...+++|+..+++....+.                        
T Consensus       352 ~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (571)
T d2ad6a1         352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceee
Confidence                   0                        00  01257778777776655442                        


Q ss_pred             -------------eEEEEEeecCccccceeeeeee---e-eeeeeceEEEEeeecceeeeecccccccccCCCCcccccC
Q 016257          311 -------------GAMITKLTVPADWKEWQIYSLL---L-ALFLASAVVFYIFFENSDSFWNFPVARNQHGGPKIESILR  373 (392)
Q Consensus       311 -------------~i~iw~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~p~~~~~~~  373 (392)
                                   .+.-+|+.+++  ..|+.....   . .+..+.+.++.+..|+.++-+|..+|+.+-......++..
T Consensus       432 ~~~~~~~~~~~~G~l~AiD~~TG~--~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a  509 (571)
T d2ad6a1         432 YPGPNGPTKKEMGQIRAFDLTTGK--AKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIG  509 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCC--EEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             ccccCCcccCCcccEEEeccCCCc--eeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCcee
Confidence                         22223332222  234332211   1 1223566888888999999999999999877766666666


Q ss_pred             CCCCc
Q 016257          374 DPQSS  378 (392)
Q Consensus       374 ~~~~~  378 (392)
                      .|.++
T Consensus       510 ~P~ty  514 (571)
T d2ad6a1         510 SPMTY  514 (571)
T ss_dssp             CCEEE
T ss_pred             cceEE
Confidence            66654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.06  E-value=0.00083  Score=56.36  Aligned_cols=197  Identities=11%  Similarity=0.068  Sum_probs=119.3

Q ss_pred             EEEecC---CCCEEEEEe-CCCcEEEEeCCCCceeecccC-CCCcEEEEEecC--CCCeEEEEcCCC-------------
Q 016257          117 CLSFSV---DGSRFAAGG-VDGHLRIMHWPSLRIILDEPK-AHKSVLDMDFSL--DSEFLATTSTDG-------------  176 (392)
Q Consensus       117 ~~~~s~---~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~~~~i~~i~~~~--~~~~l~~~~~d~-------------  176 (392)
                      .+++..   ||++|++.. .+..|.+.|+++.+......- ....+..+...+  +..+++..+++.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            455544   788887766 578899999998886442222 223566666654  455677665522             


Q ss_pred             -----cEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeC--C------------ccEEEEEeC------
Q 016257          177 -----SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG--D------------KALLAVYDI------  231 (392)
Q Consensus       177 -----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~------------d~~i~v~d~------  231 (392)
                           .+.++|..+.+...++....  ....+.++++|++.+    +++.  +            -..+.+++.      
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g--~ld~~~~s~dGK~af----~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~a  242 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGKWAF----STSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA  242 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSSEEE----EEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred             hhcceEEEEEecCCceEEEEeeeCC--ChhccccCCCCCEEE----EEeccccCCcchhhcccccceEEEEechHHhHHh
Confidence                 35678998888777766443  467899999999732    2221  1            122334443      


Q ss_pred             -----------------CCce--eeeeecccCCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCceee--------eee-
Q 016257          232 -----------------STWN--KIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEIN--------HWS-  282 (392)
Q Consensus       232 -----------------~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~--------~~~-  282 (392)
                                       +...  .+..+.........+.++|||+++++++ -+.++.++|+++....        ..+ 
T Consensus       243 v~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~  322 (459)
T d1fwxa2         243 IAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV  322 (459)
T ss_dssp             HHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEE
T ss_pred             hhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEE
Confidence                             2210  1111111123345689999999988766 5789999999752211        000 


Q ss_pred             eccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeec
Q 016257          283 KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (392)
Q Consensus       283 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~  319 (392)
                      .+....-....-+|+..|....+---|..|.-|++..
T Consensus       323 ~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         323 AEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             ECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             eecccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence            0011134556678888876566666899999999863

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=0.0022  Score=51.23  Aligned_cols=227  Identities=9%  Similarity=-0.063  Sum_probs=132.1

Q ss_pred             eEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CCCcEEEEeCCCCc----eeeccc
Q 016257           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLR----IILDEP  151 (392)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~----~~~~~~  151 (392)
                      +|+.+... .|+-.++.+.+... +.       .....+.+++|.+..+.|+-.. .++.|+-.++....    ......
T Consensus         3 fLl~s~~~-~I~~~~l~~~~~~~-~~-------~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~   73 (266)
T d1ijqa1           3 YLFFTNRH-EVRKMTLDRSEYTS-LI-------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS   73 (266)
T ss_dssp             EEEEECBS-SEEEEETTSCCCEE-EE-------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred             EEEEECCC-eEEEEECCCCccee-ee-------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEe
Confidence            44554444 37777776544221 11       1234678899998887777665 45567666654321    111122


Q ss_pred             CCCCcEEEEEecCCCCeEEEE-cCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEe
Q 016257          152 KAHKSVLDMDFSLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (392)
Q Consensus       152 ~~~~~i~~i~~~~~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d  230 (392)
                      ..-..+..+++.+.++.|+.+ ...+.|.+.++........+... ......++++|....+|   ....+..+.|.-.+
T Consensus        74 ~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~-~~~P~~l~vd~~~g~ly---~~~~~~~~~I~r~~  149 (266)
T d1ijqa1          74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN-GSKPRAIVVDPVHGFMY---WTDWGTPAKIKKGG  149 (266)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECT-TCCEEEEEEETTTTEEE---EEECSSSCEEEEEE
T ss_pred             CCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCC-CCCcceEEEEcccCeEE---EeccCCCcceeEec
Confidence            222356788888766655554 45678999999765544444433 34578999999877533   23344556788888


Q ss_pred             CCCceeeeeecccCCCcEEEEECCCCCEEEEE-eCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEE-eC
Q 016257          231 ISTWNKIGHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA-SK  308 (392)
Q Consensus       231 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~  308 (392)
                      +............-.....+++.+.++.|+.+ ...+.|...++...................++++.  +..|..+ ..
T Consensus       150 ~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~  227 (266)
T d1ijqa1         150 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDII  227 (266)
T ss_dssp             TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETT
T ss_pred             cCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECC
Confidence            87544433333333556899999988777766 45678999998765443333222212345677776  3344444 45


Q ss_pred             CCeEEEEEee
Q 016257          309 EWGAMITKLT  318 (392)
Q Consensus       309 dg~i~iw~~~  318 (392)
                      ++.|...+..
T Consensus       228 ~~~I~~~~~~  237 (266)
T d1ijqa1         228 NEAIFSANRL  237 (266)
T ss_dssp             TTEEEEEETT
T ss_pred             CCeEEEEECC
Confidence            5666555443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.99  E-value=0.00043  Score=62.03  Aligned_cols=294  Identities=11%  Similarity=0.041  Sum_probs=162.2

Q ss_pred             eEEEEeCCCeEEEEEEeCCccceeeccccCCC----CCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccC
Q 016257           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPP----LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (392)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  152 (392)
                      .|+.++.++.|.-.|.++++...++.......    ......-..++.  .+..++.+..++.+.-.|.++++.+.....
T Consensus        68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~~  145 (560)
T d1kv9a2          68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQT  145 (560)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccCc
Confidence            55666777778888888877665542110000    000001111222  244788888899999999999988765533


Q ss_pred             CCC-cEEEEEecC--CCCeEEEEcC------CCcEEEEECCCCeeeEEEecCCC--------------------------
Q 016257          153 AHK-SVLDMDFSL--DSEFLATTST------DGSARIWKTEDGVAWTFLTRNSD--------------------------  197 (392)
Q Consensus       153 ~~~-~i~~i~~~~--~~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~~--------------------------  197 (392)
                      ... .-..+.-.|  ....++.+..      .|.|.-+|.++++.+-++.....                          
T Consensus       146 ~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (560)
T d1kv9a2         146 TDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKL  225 (560)
T ss_dssp             SCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHH
T ss_pred             cCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccc
Confidence            211 111111111  1233444332      36799999999999877753211                          


Q ss_pred             ---cce-EEEEecCCCCcceEEEEEEeC-----------------CccEEEEEeCCCceeeeeecccCCCc---------
Q 016257          198 ---EKI-ELCRFSKDGTKPFLFCTVQRG-----------------DKALLAVYDISTWNKIGHKRLLRKPA---------  247 (392)
Q Consensus       198 ---~~v-~~~~~~~~~~~~~~~~~~~~~-----------------~d~~i~v~d~~~~~~~~~~~~~~~~v---------  247 (392)
                         ..+ ..+.+.+.....|   +.++.                 ....|.-.|+++++.+-.++.....+         
T Consensus       226 ~~G~~~W~~~s~D~~~~l~y---~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~  302 (560)
T d1kv9a2         226 GGGGTVWDSMAYDPELDLLY---VGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQI  302 (560)
T ss_dssp             CEECCCCSCEEEETTTTEEE---EECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred             cCCCCcccccccccccCeee---ecCCCCcccccccccccCCccccceeeEEecCCccceeEEEecccccccccccccee
Confidence               001 1245555555322   11111                 13467778999988765444322211         


Q ss_pred             EEEEECCCC---CEEEEEeCCCcEEEEecCCceeeeeeeccccCc-----------------------------------
Q 016257          248 SVLSISLDG---KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT-----------------------------------  289 (392)
Q Consensus       248 ~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----------------------------------  289 (392)
                      .-+.+..++   ..++.+..+|.++++|..+++++....... ..                                   
T Consensus       303 ~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~  381 (560)
T d1kv9a2         303 TLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGK-VTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH  381 (560)
T ss_dssp             EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC-CCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred             eeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccc-cccccccChhhccccccccccccccceeeeecccccc
Confidence            112222244   357778899999999999998765432111 00                                   


Q ss_pred             ceEEEEEeeCCCeEEEEeCC------------------------------------CeEEEEEeecCccccceeeeeee-
Q 016257          290 SIALVEFCPTQRVVLTASKE------------------------------------WGAMITKLTVPADWKEWQIYSLL-  332 (392)
Q Consensus       290 ~i~~~~~s~~~~~l~~~~~d------------------------------------g~i~iw~~~~~~~~~~~~~~~~~-  332 (392)
                      .-...+++|+..+++....+                                    |.+.-+|+.+++.  .|+..... 
T Consensus       382 ~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~--~W~~~~~~~  459 (560)
T d1kv9a2         382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKA--AWKVPYPTH  459 (560)
T ss_dssp             CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE--EEEEEESSS
T ss_pred             ccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeE--eeeccCCCC
Confidence            00134667776666554432                                    3344444444332  44332211 


Q ss_pred             ---eeeeeeceEEEEeeecceeeeecccccccccCCCCcccccCCCCCc
Q 016257          333 ---LALFLASAVVFYIFFENSDSFWNFPVARNQHGGPKIESILRDPQSS  378 (392)
Q Consensus       333 ---~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~p~~~~~~~~~~~~  378 (392)
                         ..+..+.+.+|.+..|+.++-+|..+|+.+-.......+...|.++
T Consensus       460 ~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty  508 (560)
T d1kv9a2         460 WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTF  508 (560)
T ss_dssp             CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred             CCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEE
Confidence               1123345688888899999999999999987766665666666654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.95  E-value=0.0026  Score=50.46  Aligned_cols=233  Identities=9%  Similarity=0.061  Sum_probs=142.8

Q ss_pred             eEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCc-
Q 016257           67 MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-  145 (392)
Q Consensus        67 ~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-  145 (392)
                      .+.-.+|..+.||.-+ ..+++++|+++.+.......        ..+|.--.|-.+. .|+..+ +..|+-|+++... 
T Consensus        66 dsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~--------~e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~  134 (327)
T d1utca2          66 DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM--------TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQ  134 (327)
T ss_dssp             SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC--------SSCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCC
T ss_pred             hhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc--------CCCcEEEEecCCC-EEEEEc-CCceEEEcccCCCC
Confidence            3455678888887655 55799999998875554432        3466667776554 555544 5679999996433 


Q ss_pred             eeecccCCC----CcEEEEEecCCCCeEEEEc---C----CCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE
Q 016257          146 IILDEPKAH----KSVLDMDFSLDSEFLATTS---T----DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (392)
Q Consensus       146 ~~~~~~~~~----~~i~~i~~~~~~~~l~~~~---~----d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (392)
                      +...+..|.    ..|-.-..+++.++++..+   .    .|.+.+|..+.+ ..+.+.+| ......+.+..+....-+
T Consensus       135 P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGh-aa~F~~~~~~g~~~~~~l  212 (327)
T d1utca2         135 PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH-AASFAQFKMEGNAEESTL  212 (327)
T ss_dssp             CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCS-EEEEEEECCTTCSSCEEE
T ss_pred             chhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccce-eeeeEEEEcCCCCCCceE
Confidence            333333332    2677888899999877543   2    367889998654 33444443 222333333222211223


Q ss_pred             EEEEE-eCCccEEEEEeCCCce---ee-----eeec-c---cCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeee
Q 016257          215 FCTVQ-RGDKALLAVYDISTWN---KI-----GHKR-L---LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW  281 (392)
Q Consensus       215 ~~~~~-~~~d~~i~v~d~~~~~---~~-----~~~~-~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  281 (392)
                      ++++. +...+.+.+.++....   ..     ..+. .   ...-.-++..|+.-..++.-+.-|.|++||+.++.++..
T Consensus       213 f~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~  292 (327)
T d1utca2         213 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  292 (327)
T ss_dssp             EEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEE
Confidence            33333 3445789999886521   11     0111 1   122234688888888999999999999999999998876


Q ss_pred             eeccccCcceEEEEEeeCCCeEEEEeCCCeEEE
Q 016257          282 SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI  314 (392)
Q Consensus       282 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  314 (392)
                      -. .. ...|...+-..+..-+++...+|.|.-
T Consensus       293 nR-Is-~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         293 NR-IS-GETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EE-CC-SSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             ee-cC-CCceEEeccCCCCceEEEECCCCeEEE
Confidence            53 33 566665555555556666667776653

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.91  E-value=0.0028  Score=56.94  Aligned_cols=250  Identities=9%  Similarity=0.007  Sum_probs=142.9

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceeecccCCCC-cEEEEEecC--CCCeEEEEcC------CCcEEEEECCCCeeeEEEec
Q 016257          124 GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSL--DSEFLATTST------DGSARIWKTEDGVAWTFLTR  194 (392)
Q Consensus       124 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~i~~i~~~~--~~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~  194 (392)
                      +.+++.++.|+.|.-.|.++++.+........ .-..+.-.|  .+..++.+..      .|.|+-+|+++++.+-++..
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t  200 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence            34688889999999999999998776533211 101111122  1344555543      48899999999999877642


Q ss_pred             CCC------------------------------------c-ceEEEEecCCCCcceEEEEEEeCC--------------c
Q 016257          195 NSD------------------------------------E-KIELCRFSKDGTKPFLFCTVQRGD--------------K  223 (392)
Q Consensus       195 ~~~------------------------------------~-~v~~~~~~~~~~~~~~~~~~~~~~--------------d  223 (392)
                      ...                                    . .-..+++.+....+|   +.++..              .
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy---~~tg~~~p~~~~~r~g~n~ys  277 (596)
T d1w6sa_         201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIY---FGTGNPAPWNETMRPGDNKWT  277 (596)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE---EECCCCSCSCGGGSCSCCTTS
T ss_pred             cCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeee---ccccccccccccccccccccc
Confidence            210                                    0 011234444444321   222221              3


Q ss_pred             cEEEEEeCCCceeeeeecccC---------CCcEEEEE-CCCC---CEEEEEeCCCcEEEEecCCceeeeeeecccc---
Q 016257          224 ALLAVYDISTWNKIGHKRLLR---------KPASVLSI-SLDG---KYLAMGSKDGDICVVDVKKMEINHWSKRLHL---  287 (392)
Q Consensus       224 ~~i~v~d~~~~~~~~~~~~~~---------~~v~~~~~-s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---  287 (392)
                      ..|.-.|+++++.+-.++...         .....+.. ..+|   +.++....+|.+.++|..+++++........   
T Consensus       278 ~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~  357 (596)
T d1w6sa_         278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNV  357 (596)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             ccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccccc
Confidence            568888999998865444321         11222222 2344   3577888999999999999987643211000   


Q ss_pred             --------Ccc--------------------------eEEEEEeeCCCeEEEEeCC------------------------
Q 016257          288 --------GTS--------------------------IALVEFCPTQRVVLTASKE------------------------  309 (392)
Q Consensus       288 --------~~~--------------------------i~~~~~s~~~~~l~~~~~d------------------------  309 (392)
                              ..+                          -..++++|+..+++....+                        
T Consensus       358 ~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~  437 (596)
T d1w6sa_         358 FKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLN  437 (596)
T ss_dssp             EEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccc
Confidence                    000                          0124666666655544322                        


Q ss_pred             ---------------CeEEEEEeecCccccceeeeeee---e-eeeeeceEEEEeeecceeeeecccccccccCCCCccc
Q 016257          310 ---------------WGAMITKLTVPADWKEWQIYSLL---L-ALFLASAVVFYIFFENSDSFWNFPVARNQHGGPKIES  370 (392)
Q Consensus       310 ---------------g~i~iw~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~p~~~~  370 (392)
                                     |.+.-||+.+++.  .|+.....   . .+.-+.+.+|.+..|+.++-+|..+|+.+-......+
T Consensus       438 ~~~~~~g~~~~~~~~G~l~A~D~~TG~~--~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~  515 (596)
T d1w6sa_         438 MYPGPKGDRQNYEGLGQIKAYNAITGDY--KWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG  515 (596)
T ss_dssp             EEECTTSBTTTTBCCEEEEEECTTTCCE--EEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             cccCcccCcccCCCcceEEEEeCCCCce--ecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCC
Confidence                           2344444433321  34322111   1 1122456788888999999999999999987777666


Q ss_pred             ccCCCCCc
Q 016257          371 ILRDPQSS  378 (392)
Q Consensus       371 ~~~~~~~~  378 (392)
                      +...|.++
T Consensus       516 ~~a~P~tY  523 (596)
T d1w6sa_         516 AIGYPMTY  523 (596)
T ss_dssp             CCSCCEEE
T ss_pred             cccCCeEE
Confidence            77777665

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.89  E-value=0.005  Score=51.92  Aligned_cols=257  Identities=11%  Similarity=0.015  Sum_probs=130.0

Q ss_pred             eEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC-CeEEEEEEeCCccceeeccccCCCCCCCCCeE
Q 016257           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-GGCKLFEVYGGATDINLLAKKMPPLQDAGPQK  116 (392)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~  116 (392)
                      .++.+|+.+.....  .... ...|........+.++++.++.|+.+ ..+.+||..+.....      .........-.
T Consensus        53 ~~~~yd~~t~~w~~--~~~~-~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~------~~~~~~~r~~~  123 (387)
T d1k3ia3          53 LTSSWDPSTGIVSD--RTVT-VTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIP------GPDMQVARGYQ  123 (387)
T ss_dssp             EEEEECTTTCCBCC--CEEE-ECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEE------CCCCSSCCSSC
T ss_pred             EEEEEECCCCcEee--cCCC-CCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccc------ccccccccccc
Confidence            35566766554422  2111 22333445567888999999888655 579999987765321      11112223335


Q ss_pred             EEEecCCCCEEEEEeCC------CcEEEEeCCCCceeeccc--------CCCC------cEEEEEecCCCCeEEEEcCCC
Q 016257          117 CLSFSVDGSRFAAGGVD------GHLRIMHWPSLRIILDEP--------KAHK------SVLDMDFSLDSEFLATTSTDG  176 (392)
Q Consensus       117 ~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~--------~~~~------~i~~i~~~~~~~~l~~~~~d~  176 (392)
                      ..+..+||+.++.|+.+      ..+.+||..+.+-.....        ....      .-..+...++++.++.+..++
T Consensus       124 ~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~  203 (387)
T d1k3ia3         124 SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTA  203 (387)
T ss_dssp             EEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSE
T ss_pred             ceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCC
Confidence            67777899998888743      368999988765321100        0000      001122234566666666666


Q ss_pred             cEEEEECCCCeeeEEEec--CC-----CcceEEEEecC-CCCcceEEEEEEeCCc--------cEEEEEeCCC---ce-e
Q 016257          177 SARIWKTEDGVAWTFLTR--NS-----DEKIELCRFSK-DGTKPFLFCTVQRGDK--------ALLAVYDIST---WN-K  236 (392)
Q Consensus       177 ~i~vwd~~~~~~~~~~~~--~~-----~~~v~~~~~~~-~~~~~~~~~~~~~~~d--------~~i~v~d~~~---~~-~  236 (392)
                      .+.+++..+.........  ..     ...-.++.+.. +++.     ++.++..        ....+.++..   .. .
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v-----~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (387)
T d1k3ia3         204 MNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKI-----LTFGGSPDYQDSDATTNAHIITLGEPGTSPNT  278 (387)
T ss_dssp             EEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEE-----EEECCBSSSSSSBCCCCEEEEECCSTTSCCEE
T ss_pred             cEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCce-----EEEEeccCCCCCcccceeecccccccccCCCc
Confidence            777777766543322111  10     00011222222 2321     2333311        1222333221   11 1


Q ss_pred             eeeec--ccCCCcEEEEECCCCCEEEEEeCC-----------CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeE
Q 016257          237 IGHKR--LLRKPASVLSISLDGKYLAMGSKD-----------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV  303 (392)
Q Consensus       237 ~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  303 (392)
                      .....  .....-.+....+||+++++|+.+           ..+.+||..+.+-...-........-....+.+||+.+
T Consensus       279 ~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~  358 (387)
T d1k3ia3         279 VFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVF  358 (387)
T ss_dssp             EECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEE
T ss_pred             eeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEE
Confidence            11111  111122345666899999998853           14789999887643332111101112234467899999


Q ss_pred             EEEeC
Q 016257          304 LTASK  308 (392)
Q Consensus       304 ~~~~~  308 (392)
                      +.|+.
T Consensus       359 v~GG~  363 (387)
T d1k3ia3         359 NGGGG  363 (387)
T ss_dssp             EEECC
T ss_pred             EEeCC
Confidence            99884

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.82  E-value=0.00074  Score=60.67  Aligned_cols=294  Identities=12%  Similarity=0.062  Sum_probs=157.3

Q ss_pred             eEEEEeCCCeEEEEEEeCCccceeeccccCCCCC---CCCC-eEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccC
Q 016257           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ---DAGP-QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (392)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~---~~~~-v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  152 (392)
                      .|++++.++.|.-+|.++++.+.++.........   .... -..+.+.  ...++.++.|+.+.-.|.++++.+.....
T Consensus        79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~~  156 (573)
T d1kb0a2          79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQNT  156 (573)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEET
T ss_pred             EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceecccC
Confidence            4555666777777777777765544221100000   0000 1122222  33677778899999999999988654322


Q ss_pred             C--CC-cEEEEEecC--CCCeEEEEcC------CCcEEEEECCCCeeeEEEecCCC------------------------
Q 016257          153 A--HK-SVLDMDFSL--DSEFLATTST------DGSARIWKTEDGVAWTFLTRNSD------------------------  197 (392)
Q Consensus       153 ~--~~-~i~~i~~~~--~~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~~------------------------  197 (392)
                      .  .. .+. +.-.|  .+..+++++.      .|.|+.+|.++++.+-.+.....                        
T Consensus       157 ~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~  235 (573)
T d1kb0a2         157 FEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKW  235 (573)
T ss_dssp             TTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCH
T ss_pred             ccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCce
Confidence            1  11 111 11111  1334555432      46799999999998877643210                        


Q ss_pred             ------cce-EEEEecCCCCcceEEEEEEe-----------------CCccEEEEEeCCCceeeeeecccC---------
Q 016257          198 ------EKI-ELCRFSKDGTKPFLFCTVQR-----------------GDKALLAVYDISTWNKIGHKRLLR---------  244 (392)
Q Consensus       198 ------~~v-~~~~~~~~~~~~~~~~~~~~-----------------~~d~~i~v~d~~~~~~~~~~~~~~---------  244 (392)
                            ..+ ...++.++....+   +.++                 .....|.-.|.++++..-..+...         
T Consensus       236 ~~~~~G~~vW~~~s~D~~~g~~~---~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~  312 (573)
T d1kb0a2         236 WEAGGGGTMWDSMTFDAELNTMY---VGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST  312 (573)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEE---EECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred             eecCCCCcccccceEchhhCeee---eccCCCccccccccccccccccccceEEEecccchheeecccccCccccccccc
Confidence                  001 1234444444321   1111                 112357777888877654433221         


Q ss_pred             CCcEEEEECCCC---CEEEEEeCCCcEEEEecCCceeeeeeeccc---------------------------------cC
Q 016257          245 KPASVLSISLDG---KYLAMGSKDGDICVVDVKKMEINHWSKRLH---------------------------------LG  288 (392)
Q Consensus       245 ~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------------------------------~~  288 (392)
                      .+........++   ..++.++.+|.++++|..+++.+.......                                 ..
T Consensus       313 ~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg  392 (573)
T d1kb0a2         313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA  392 (573)
T ss_dssp             SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred             ceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCC
Confidence            112222222333   457778889999999999998765332110                                 00


Q ss_pred             cceEEEEEeeCCCeEEEEeCCC-------------------------------------------eEEEEEeecCccccc
Q 016257          289 TSIALVEFCPTQRVVLTASKEW-------------------------------------------GAMITKLTVPADWKE  325 (392)
Q Consensus       289 ~~i~~~~~s~~~~~l~~~~~dg-------------------------------------------~i~iw~~~~~~~~~~  325 (392)
                      ..-..++++|+..+++....+.                                           .+.-+|+.+++  ..
T Consensus       393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk--~~  470 (573)
T d1kb0a2         393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK--AA  470 (573)
T ss_dssp             SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE--EE
T ss_pred             ccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCc--eE
Confidence            0011246777776666544432                                           23333333222  23


Q ss_pred             eeeeeee----eeeeeeceEEEEeeecceeeeecccccccccCCCCcccccCCCCCc
Q 016257          326 WQIYSLL----LALFLASAVVFYIFFENSDSFWNFPVARNQHGGPKIESILRDPQSS  378 (392)
Q Consensus       326 ~~~~~~~----~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~p~~~~~~~~~~~~  378 (392)
                      |+.....    .....+.+.+|.+..|+.++.+|..+|+.+-......++...|..+
T Consensus       471 W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty  527 (573)
T d1kb0a2         471 WSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTY  527 (573)
T ss_dssp             EEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred             eeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEE
Confidence            4332211    1122356688888899999999999999998776666666666654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=0.0056  Score=48.74  Aligned_cols=208  Identities=7%  Similarity=-0.107  Sum_probs=124.1

Q ss_pred             CCCCeeEEEEcCCCCeEEEEe-CCCeEEEEEEeCCccc---eeeccccCCCCCCCCCeEEEEecCCCCEEEEEe-CCCcE
Q 016257           62 SEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATD---INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHL  136 (392)
Q Consensus        62 h~~~v~~~~~sp~~~~l~~~~-~d~~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i  136 (392)
                      ....+.+++|++..+.|+... ..+.|.-.++......   .....      .....+..+++.+.+..|+... ..+.|
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~------~~~~~p~glAvD~~~~~lY~~d~~~~~I  101 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS------RDIQAPDGLAVDWIHSNIYWTDSVLGTV  101 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC------SSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEe------CCCCCcceEEEeeccceEEEEecCCCEE
Confidence            355678999999888887665 4455665555432211   11111      1123566788877666666554 55789


Q ss_pred             EEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEc--CCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceE
Q 016257          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (392)
Q Consensus       137 ~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (392)
                      .+.++..................++++|...+|+...  ..+.|.-.++.... ...+....-.....+++.+.+..+| 
T Consensus       102 ~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-~~~l~~~~~~~p~gl~iD~~~~~lY-  179 (266)
T d1ijqa1         102 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLY-  179 (266)
T ss_dssp             EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEEE-
T ss_pred             EeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-eecccccccceeeEEEeeccccEEE-
Confidence            9999876655444444445688999999766666543  33457777775433 3334333333578999999887643 


Q ss_pred             EEEEEeCCccEEEEEeCCCceeeeeeccc--CCCcEEEEECCCCCEEEEE-eCCCcEEEEecCCceeeeee
Q 016257          215 FCTVQRGDKALLAVYDISTWNKIGHKRLL--RKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEINHWS  282 (392)
Q Consensus       215 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~  282 (392)
                         .+....+.|...|+............  ......+++.  +.+|+.. ..++.|...+..+++....+
T Consensus       180 ---w~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         180 ---WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             ---EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             ---EecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEE
Confidence               44566789999998764433222221  2234567765  3445444 46677888887777655444

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.65  E-value=0.0037  Score=52.76  Aligned_cols=119  Identities=10%  Similarity=0.032  Sum_probs=74.1

Q ss_pred             eeEEEEcCCCCeEEEEeCCC-----------eEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC-
Q 016257           66 PMTIAVNPSGDDFVCSTTNG-----------GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-  133 (392)
Q Consensus        66 v~~~~~sp~~~~l~~~~~d~-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-  133 (392)
                      +.......+|+.++.|+.+.           .+.+||..++.........    ..+.......++.++|++++.|+.+ 
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~----~~~~~~~~~~~~~~~g~i~v~Gg~~~   97 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV----TKHDMFCPGISMDGNGQIVVTGGNDA   97 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE----CSCCCSSCEEEECTTSCEEEECSSST
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCC----CCcccceeEEEEecCCcEEEeecCCC
Confidence            33444456788888877421           3678998877643221111    1122334567788999998888655 


Q ss_pred             CcEEEEeCCCCceeecccCCC-CcEEEEEecCCCCeEEEEcCC------CcEEEEECCCCee
Q 016257          134 GHLRIMHWPSLRIILDEPKAH-KSVLDMDFSLDSEFLATTSTD------GSARIWKTEDGVA  188 (392)
Q Consensus       134 g~i~i~d~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d------~~i~vwd~~~~~~  188 (392)
                      ..+.+||..+......-.... ..-...+..+|++.++.++.+      ..+.+||..+.+-
T Consensus        98 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3          98 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             cceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            589999998766532211111 123456677899998888743      3589999987654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.63  E-value=0.005  Score=55.01  Aligned_cols=238  Identities=11%  Similarity=0.006  Sum_probs=135.1

Q ss_pred             CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEe------CCCcEEEEeCCCCceeec
Q 016257           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG------VDGHLRIMHWPSLRIILD  149 (392)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~i~d~~~~~~~~~  149 (392)
                      ..|+.++.++.+.-.|.++++..........   .....++.--.-.++ .++.+.      .+|.|+-+|+++++.+.+
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~---~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~  191 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDP---KVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCG---GGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhcccccccc---ccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEE
Confidence            4677778889888888888876544321110   000111100011123 445544      367899999999998764


Q ss_pred             ccCCC-------------------------------------CcE-EEEEecCCCCeEEEEcC----------------C
Q 016257          150 EPKAH-------------------------------------KSV-LDMDFSLDSEFLATTST----------------D  175 (392)
Q Consensus       150 ~~~~~-------------------------------------~~i-~~i~~~~~~~~l~~~~~----------------d  175 (392)
                      .....                                     ..+ ...++++....++.+..                .
T Consensus       192 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s  271 (571)
T d2ad6a1         192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT  271 (571)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred             EeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccc
Confidence            32110                                     111 23455666666665443                2


Q ss_pred             CcEEEEECCCCeeeEEEecCCCc--------ceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC---
Q 016257          176 GSARIWKTEDGVAWTFLTRNSDE--------KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---  244 (392)
Q Consensus       176 ~~i~vwd~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~---  244 (392)
                      ..+...|+++++.+-.++..+..        .........+++..  ..++..+.+|.+.++|.++++.+...+...   
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~--~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~  349 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMT--PLLSHIDRNGILYTLNRENGNLIVAEKVDPAVN  349 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEE--EEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccc--cceeeccccceEEEEecCCCcEeeeeccCCccc
Confidence            45778899999988777643221        11122223344321  225778889999999999988653211100   


Q ss_pred             ------------------------------------CCcEEEEECCCCCEEEEEeCC-----------------------
Q 016257          245 ------------------------------------KPASVLSISLDGKYLAMGSKD-----------------------  265 (392)
Q Consensus       245 ------------------------------------~~v~~~~~s~~~~~l~~~~~d-----------------------  265 (392)
                                                          ..-...+++|+...++....+                       
T Consensus       350 ~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (571)
T d2ad6a1         350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL  429 (571)
T ss_dssp             SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             ccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccce
Confidence                                                000125677777776654332                       


Q ss_pred             --------------CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257          266 --------------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       266 --------------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                                    |.|.-+|+.+++..-......   +..+-..+..+.++++|+.||.++.+|.++++.
T Consensus       430 ~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~---~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~  497 (571)
T d2ad6a1         430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF---AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             eeccccCCcccCCcccEEEeccCCCceeeEcCCCC---CCCcceeEecCCEEEEECCCCeEEEEECCCCcE
Confidence                          357777888877665443221   111112233566788899999999999887765

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.47  E-value=0.033  Score=49.79  Aligned_cols=236  Identities=8%  Similarity=-0.002  Sum_probs=136.3

Q ss_pred             CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecC--CCCEEEEEeC------CCcEEEEeCCCCcee
Q 016257           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGV------DGHLRIMHWPSLRII  147 (392)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~------dg~i~i~d~~~~~~~  147 (392)
                      ..++.++.|+.|.-.|.++++....+......   ....+   .-+|  -+..++++..      .|.|+-+|+++|+.+
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~---~~~~~---t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~  195 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIK---VGSTL---TIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQV  195 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGG---GTCBC---CSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccc---ccccc---ccCCcEECCeEEEeeccccccccCceEEEECCCCcEE
Confidence            46788888998988888888866655321110   00011   1111  1335666543      488999999999987


Q ss_pred             ecccCCC-------------------------------------C-cEEEEEecCCCCeEEEEcCC--------------
Q 016257          148 LDEPKAH-------------------------------------K-SVLDMDFSLDSEFLATTSTD--------------  175 (392)
Q Consensus       148 ~~~~~~~-------------------------------------~-~i~~i~~~~~~~~l~~~~~d--------------  175 (392)
                      .++....                                     . .-..+++.+...+++.+..+              
T Consensus       196 W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~  275 (596)
T d1w6sa_         196 WRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNK  275 (596)
T ss_dssp             EEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred             EEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccc
Confidence            6532110                                     0 11234566666666655322              


Q ss_pred             --CcEEEEECCCCeeeEEEecCCCc--------ceEEEE-ecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccC
Q 016257          176 --GSARIWKTEDGVAWTFLTRNSDE--------KIELCR-FSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR  244 (392)
Q Consensus       176 --~~i~vwd~~~~~~~~~~~~~~~~--------~v~~~~-~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~  244 (392)
                        ..+.-.|+++++.+-.++..+..        ....+. ...+++.  .-.++....+|.+.++|..+++.+...+...
T Consensus       276 ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~--~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~  353 (596)
T d1w6sa_         276 WTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKA--RKLLTHPDRNGIVYTLDRTDGALVSANKLDD  353 (596)
T ss_dssp             TSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCE--EEEEEEECTTSEEEEEETTTCCEEEEEESST
T ss_pred             ccccccccccccccccccccceeccccCCccccceeeeecccccccc--ccceeccccccceeeecCCCCceeeeccccc
Confidence              34778899999988777643221        111111 1234432  1226778889999999999988763321100


Q ss_pred             ---------------------------------------CCcEEEEECCCCCEEEEEeCC--------------------
Q 016257          245 ---------------------------------------KPASVLSISLDGKYLAMGSKD--------------------  265 (392)
Q Consensus       245 ---------------------------------------~~v~~~~~s~~~~~l~~~~~d--------------------  265 (392)
                                                             ..-..++++|+..+++....+                    
T Consensus       354 ~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g  433 (596)
T d1w6sa_         354 TVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVG  433 (596)
T ss_dssp             TCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCC
T ss_pred             cccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccc
Confidence                                                   000124566666665543221                    


Q ss_pred             -------------------CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCcc
Q 016257          266 -------------------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (392)
Q Consensus       266 -------------------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~  322 (392)
                                         |.|.-||+.+++..-....   ..+..+-..+..|.+++.|+.||.++.+|.++++.
T Consensus       434 ~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~---~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~  506 (596)
T d1w6sa_         434 ATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME---RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDL  506 (596)
T ss_dssp             EEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cccccccCcccCcccCCCcceEEEEeCCCCceecccCC---CCCCccceeEecCCEEEEECCCCeEEEEECCCCcE
Confidence                               4577778888776544322   22222223344677888899999999998887765

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.32  E-value=0.05  Score=48.50  Aligned_cols=296  Identities=10%  Similarity=0.015  Sum_probs=153.6

Q ss_pred             CeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCC-CC-eEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCC
Q 016257           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA-GP-QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (392)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~-v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  153 (392)
                      ..|++++.++.|.-.|..+++.+.++........... .. -..+++.  +..++.++.++.+.-.|.++++.+......
T Consensus        69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~~~~  146 (582)
T d1flga_          69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             CEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--CCceEEecCCCeEEEecccccceeeeeccc
Confidence            3566667777788788887776655432211000000 00 1122332  346788889999999999999876432211


Q ss_pred             -CCc---E--EEEEecC--CCCeEEEE-------cCCCcEEEEECCCCeeeEEEecCCC---------------------
Q 016257          154 -HKS---V--LDMDFSL--DSEFLATT-------STDGSARIWKTEDGVAWTFLTRNSD---------------------  197 (392)
Q Consensus       154 -~~~---i--~~i~~~~--~~~~l~~~-------~~d~~i~vwd~~~~~~~~~~~~~~~---------------------  197 (392)
                       ...   .  .-....+  .+..++..       +..+.|.-+|.++++.+-++.....                     
T Consensus       147 ~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~  226 (582)
T d1flga_         147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW  226 (582)
T ss_dssp             CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred             CCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCccccccccccccccccccccC
Confidence             100   0  0011111  12333332       1245688899998888766543211                     


Q ss_pred             ------------------cce-EEEEecCCCCcceEEEEEEeC----------------------CccEEEEEeCCCcee
Q 016257          198 ------------------EKI-ELCRFSKDGTKPFLFCTVQRG----------------------DKALLAVYDISTWNK  236 (392)
Q Consensus       198 ------------------~~v-~~~~~~~~~~~~~~~~~~~~~----------------------~d~~i~v~d~~~~~~  236 (392)
                                        ..+ ..+++.+....+|   +.++.                      ....+.-.|.++++.
T Consensus       227 ~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy---~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~  303 (582)
T d1flga_         227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTII---VGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV  303 (582)
T ss_dssp             CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEE---EEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred             CCccccccCCccceecCCCcccccceeccccceEE---eccCCcccccccccccCCCCcCcccccccceeEEecccchhh
Confidence                              001 1245555544322   22211                      124577778888887


Q ss_pred             eeeecccCCC---------cEEEEEC-CCC---CEEEEEeCCCcEEEEecCCceeeeeeeccc-----------------
Q 016257          237 IGHKRLLRKP---------ASVLSIS-LDG---KYLAMGSKDGDICVVDVKKMEINHWSKRLH-----------------  286 (392)
Q Consensus       237 ~~~~~~~~~~---------v~~~~~s-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------  286 (392)
                      .-.++.....         ..-+.+. .++   ..++..+.++.+++.|.++++.+.......                 
T Consensus       304 ~W~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~~~~~  383 (582)
T d1flga_         304 KWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVE  383 (582)
T ss_dssp             EEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEE
T ss_pred             hhcccccccccccccccccccccccccccccccceeEeecccccEEeecccCCcccccccccCcccccccccccccccee
Confidence            6444332111         1112221 233   246667788899999998887653221000                 


Q ss_pred             --------------------------cCcceEEEEEeeCCCeEEEEeCC-------------------------------
Q 016257          287 --------------------------LGTSIALVEFCPTQRVVLTASKE-------------------------------  309 (392)
Q Consensus       287 --------------------------~~~~i~~~~~s~~~~~l~~~~~d-------------------------------  309 (392)
                                                ....-...+++|+..+++....+                               
T Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  463 (582)
T d1flga_         384 REGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDD  463 (582)
T ss_dssp             CTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSS
T ss_pred             ccccccccccccccccceEEECCCccCCcccccceecCCCCceeeeccccccccccccccccccccccccCccccccccC
Confidence                                      00011123555555545443333                               


Q ss_pred             --CeEEEEEeecCccccceeeeeee----eeeeeeceEEEEeeecceeeeecccccccccCCCCcccccCCCCCc
Q 016257          310 --WGAMITKLTVPADWKEWQIYSLL----LALFLASAVVFYIFFENSDSFWNFPVARNQHGGPKIESILRDPQSS  378 (392)
Q Consensus       310 --g~i~iw~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~i~~W~~~~~~~~~~~p~~~~~~~~~~~~  378 (392)
                        |.+.-+|+.+++  ..|+.....    .....+.+.+|.+..|+.++-+|..+|+.+-......++...|..+
T Consensus       464 ~~G~l~AiD~~TG~--i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty  536 (582)
T d1flga_         464 HVGSLRAMDPVSGK--VVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITW  536 (582)
T ss_dssp             CSEEEEEECTTTCC--EEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred             CCCeEEEEcCCCCc--EEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEE
Confidence              233333333322  244332211    1123345688888899999999999999998776666666666554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.12  E-value=0.025  Score=50.26  Aligned_cols=173  Identities=10%  Similarity=0.018  Sum_probs=98.1

Q ss_pred             CcEEEEeCCCCceeecccCCCCcE---------EEEEecCCC---CeEEEEcCCCcEEEEECCCCeeeEEEecCCCcc--
Q 016257          134 GHLRIMHWPSLRIILDEPKAHKSV---------LDMDFSLDS---EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK--  199 (392)
Q Consensus       134 g~i~i~d~~~~~~~~~~~~~~~~i---------~~i~~~~~~---~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--  199 (392)
                      ..|.-.|+++++....++..+..+         .-+....++   +.++.++.+|.+.++|..+++.+..........  
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            356777888888765443322111         111222233   356778899999999999998875543221100  


Q ss_pred             ---------------------------------eEEEEecCCCCcceEEEEE----------------------------
Q 016257          200 ---------------------------------IELCRFSKDGTKPFLFCTV----------------------------  218 (392)
Q Consensus       200 ---------------------------------v~~~~~~~~~~~~~~~~~~----------------------------  218 (392)
                                                       -...+++|+...+++-..-                            
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                                             0134556665542221100                            


Q ss_pred             ---EeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEE
Q 016257          219 ---QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVE  295 (392)
Q Consensus       219 ---~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~  295 (392)
                         .....+.|.-+|+.+++.+-+.... .+...-.++-.+.++++|+.||.++.+|.++|+.+-.+.... ...-.-+.
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~-~~~~~P~t  507 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS-GIVAAPMT  507 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-CCCSCCEE
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCC-CccccCEE
Confidence               0111367888999998876544322 122111223346788889999999999999999887664332 21112245


Q ss_pred             EeeCCC-eEEEEeC
Q 016257          296 FCPTQR-VVLTASK  308 (392)
Q Consensus       296 ~s~~~~-~l~~~~~  308 (392)
                      +..+|+ +|+....
T Consensus       508 y~~dGkqyv~v~aG  521 (560)
T d1kv9a2         508 FELAGRQYVAIMAG  521 (560)
T ss_dssp             EEETTEEEEEEEEC
T ss_pred             EEECCEEEEEEEeC
Confidence            666886 5554443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.98  E-value=0.047  Score=48.57  Aligned_cols=83  Identities=16%  Similarity=0.077  Sum_probs=52.5

Q ss_pred             ccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEEecCCceeeeeeeccccCcceEEEEEeeCCC-
Q 016257          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-  301 (392)
Q Consensus       223 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-  301 (392)
                      -|.+.-||+.+++.+-..+... +...-..+-.|.++++|+.||.++.+|.++|+.+-.+.... ...-.-+.|..+|+ 
T Consensus       456 ~G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~-~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         456 FGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT-GVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-CCCSCCEEEEETTEE
T ss_pred             cccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCC-CccccCEEEEECCEE
Confidence            3678899999998875544322 11111223357788899999999999999999887664322 11111145566887 


Q ss_pred             eEEEEe
Q 016257          302 VVLTAS  307 (392)
Q Consensus       302 ~l~~~~  307 (392)
                      ||+..+
T Consensus       534 Yv~v~~  539 (573)
T d1kb0a2         534 YVSVAV  539 (573)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            444433

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.64  E-value=0.13  Score=42.11  Aligned_cols=184  Identities=13%  Similarity=0.103  Sum_probs=100.6

Q ss_pred             eEEEEecCCCCEEEEEeC------------CCcEEEEeCCCCceeecc---cCCC-----CcEEEEEe--cCCCC-eEEE
Q 016257          115 QKCLSFSVDGSRFAAGGV------------DGHLRIMHWPSLRIILDE---PKAH-----KSVLDMDF--SLDSE-FLAT  171 (392)
Q Consensus       115 v~~~~~s~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~---~~~~-----~~i~~i~~--~~~~~-~l~~  171 (392)
                      ...+...|+|..+++++.            .|.|.++|+++.+.....   ....     -....+..  .++++ +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            345667777766555431            488999998765432111   1110     02344443  45565 3444


Q ss_pred             E---cCCCcEEEEECCCCee----eEEEecCCCcceEEEEecCCCCcceEEEEEEeC-----------------CccEEE
Q 016257          172 T---STDGSARIWKTEDGVA----WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-----------------DKALLA  227 (392)
Q Consensus       172 ~---~~d~~i~vwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----------------~d~~i~  227 (392)
                      .   ....+|.+|++.....    +.++..........++...++..     .++..                 ..+.+.
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~f-----y~Tnd~~~~~~~~~~~e~~~~~~~g~v~  191 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHF-----YATNDHYFIDPYLKSWEMHLGLAWSFVT  191 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEE-----EEEESCSCCSHHHHHHHHHTTCCCEEEE
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCE-----EEecCccCcChhhhhhhHhhcCCceeEE
Confidence            4   2456788888754322    22333333345678888888763     23311                 223455


Q ss_pred             EEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEe-CCCcEEEEecCCceeeeeeeccccCcceEEEEEeeC-CCeEEE
Q 016257          228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT-QRVVLT  305 (392)
Q Consensus       228 v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~  305 (392)
                      -||....+.+   ...-...+.++++||+++|+++. ..++|++|++............+..+.+-.+.+.++ |.+.++
T Consensus       192 ~~~~~~~~~~---~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         192 YYSPNDVRVV---AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             EECSSCEEEE---EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             EEcCCceEEE---cCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            5554433222   12234577899999998876664 567899999875432222211222566778888764 444444


Q ss_pred             E
Q 016257          306 A  306 (392)
Q Consensus       306 ~  306 (392)
                      +
T Consensus       269 ~  269 (340)
T d1v04a_         269 C  269 (340)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.63  E-value=0.13  Score=42.05  Aligned_cols=192  Identities=10%  Similarity=0.109  Sum_probs=111.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEec------CCCCeEEEEc-CC-C--cEEEEECCC-CeeeEE
Q 016257          123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS------LDSEFLATTS-TD-G--SARIWKTED-GVAWTF  191 (392)
Q Consensus       123 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~------~~~~~l~~~~-~d-~--~i~vwd~~~-~~~~~~  191 (392)
                      +..+++....++-|++||++ |+.+..+.  .+.+..+..-      ....-+++++ ++ +  +|.+|.+.. ...+..
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            45566666667679999985 66665543  2345554432      2222344444 22 2  577887752 223333


Q ss_pred             EecCC------CcceEEEEe--cCCCCcceEEEEEEeCCccEEEEEeCCC---c----eeeeeecccCCCcEEEEECCCC
Q 016257          192 LTRNS------DEKIELCRF--SKDGTKPFLFCTVQRGDKALLAVYDIST---W----NKIGHKRLLRKPASVLSISLDG  256 (392)
Q Consensus       192 ~~~~~------~~~v~~~~~--~~~~~~~~~~~~~~~~~d~~i~v~d~~~---~----~~~~~~~~~~~~v~~~~~s~~~  256 (392)
                      +....      ...++.+++  ++.....+   ++....+|.+..|.+..   +    +.++.+. ....+..+.+.+..
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~---afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~  191 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYY---AMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEY  191 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEE---EEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTT
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEE---EEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCC
Confidence            32111      113666776  55544322   56677788888887632   2    2233333 34578899999999


Q ss_pred             CEEEEEeCCCcEEEEecCC-----ceeeeeeeccccCcceEEEEEee--CC--CeEEEEeCCCeEEEEEeecCc
Q 016257          257 KYLAMGSKDGDICVVDVKK-----MEINHWSKRLHLGTSIALVEFCP--TQ--RVVLTASKEWGAMITKLTVPA  321 (392)
Q Consensus       257 ~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~i~~~~~s~--~~--~~l~~~~~dg~i~iw~~~~~~  321 (392)
                      ..|+.+-++.-|..++...     ...+......+....+..|+.-.  ++  -+|+|.-.+++..+|+...+.
T Consensus       192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~  265 (353)
T d1h6la_         192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQN  265 (353)
T ss_dssp             TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred             CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCc
Confidence            9999998877676666542     22222221223366788888654  22  345555568899999987653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.56  E-value=0.18  Score=42.80  Aligned_cols=253  Identities=11%  Similarity=-0.040  Sum_probs=123.8

Q ss_pred             eeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCC--
Q 016257            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN--   84 (392)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d--   84 (392)
                      +..++++|+++++++...-++      .....+..+|..++...     ...+..  .....+.|++|++.|+....+  
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G------~e~~~l~v~Dl~tg~~~-----~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~  193 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASG------SDWVTIKFMKVDGAKEL-----PDVLER--VKFSCMAWTHDGKGMFYNAYPQQ  193 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETT------CSCEEEEEEETTTTEEE-----EEEEEE--ECSCCEEECTTSSEEEEEECCCC
T ss_pred             ecceEecCCCCEEEEEecccc------CchheeEEeccCcceec-----cccccc--ccccceEEcCCCCEEEEEEeccc
Confidence            345677898876443332222      22234555554443331     122221  123568899999987765432  


Q ss_pred             --------------CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeC---CCc--EEEEeCCCCc
Q 016257           85 --------------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGH--LRIMHWPSLR  145 (392)
Q Consensus        85 --------------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~--i~i~d~~~~~  145 (392)
                                    ..|..+.+.+...........   ......+..+..++++++++....   +..  +.+.++....
T Consensus       194 ~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e---~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~  270 (430)
T d1qfma1         194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF---PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQES  270 (430)
T ss_dssp             SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC---TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred             cCcccccccccCCcceEEEEECCCCcccccccccc---ccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcc
Confidence                          246666666554332222211   112235667788999998765332   233  3444543221


Q ss_pred             e--------eecccCCCCcEEEEEecCCCCeEEEEc---CCCcEEEEECCCCee--eEEEecCCCcceEEEEecCCCCcc
Q 016257          146 I--------ILDEPKAHKSVLDMDFSLDSEFLATTS---TDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKP  212 (392)
Q Consensus       146 ~--------~~~~~~~~~~i~~i~~~~~~~~l~~~~---~d~~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~  212 (392)
                      .        ............-+. +..+.+++...   .++.|...++.....  ...+..++...+..-.+...+.++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~l  349 (430)
T d1qfma1         271 NGITGILKWVKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFL  349 (430)
T ss_dssp             SSSCSSCCCEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEE
T ss_pred             cccccccceeEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEE
Confidence            1        001111112222222 22233444333   235676677665422  233433333334433344444432


Q ss_pred             eEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCC----CcEEEEecCCcee
Q 016257          213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD----GDICVVDVKKMEI  278 (392)
Q Consensus       213 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~  278 (392)
                      +  ....-.....|.++++.+++.........+.+..+...++...+...-.+    .++.-+|+.+++.
T Consensus       350 v--l~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         350 V--LCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             E--EEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             E--EEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            1  12233445679999998877654444444455555555555544433222    6788899988764

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.55  E-value=0.18  Score=42.76  Aligned_cols=221  Identities=14%  Similarity=0.117  Sum_probs=112.2

Q ss_pred             CeeEEEEcCCCCeEEEEe-CC----CeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCC------
Q 016257           65 DPMTIAVNPSGDDFVCST-TN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------  133 (392)
Q Consensus        65 ~v~~~~~sp~~~~l~~~~-~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------  133 (392)
                      .+...++||+++++|.+- .+    ..++++|+.+++........        .....++|++|++.|+....+      
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--------~~~~~~~W~~D~~~~~Y~~~~~~~~~~  197 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--------VKFSCMAWTHDGKGMFYNAYPQQDGKS  197 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--------ECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--------ccccceEEcCCCCEEEEEEeccccCcc
Confidence            345678899999888542 23    36899999988754332211        112568999999988765432      


Q ss_pred             ----------CcEEEEeCCCCce--eecccCC--CCcEEEEEecCCCCeEEEEc---CCCcEEEE--ECCCCee------
Q 016257          134 ----------GHLRIMHWPSLRI--ILDEPKA--HKSVLDMDFSLDSEFLATTS---TDGSARIW--KTEDGVA------  188 (392)
Q Consensus       134 ----------g~i~i~d~~~~~~--~~~~~~~--~~~i~~i~~~~~~~~l~~~~---~d~~i~vw--d~~~~~~------  188 (392)
                                ..|..+.+.+...  .......  ...+..+..++++++++...   .+....+|  |+.....      
T Consensus       198 ~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~  277 (430)
T d1qfma1         198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL  277 (430)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred             cccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccc
Confidence                      2577777765432  1122222  22466777899999876432   23333444  4432211      


Q ss_pred             -eEEEecCCCcceEEEEecCCCCcceEEEEEEe--CCccEEEEEeCCCceee--eee-cccCCCcEEEEECCCCCEEEEE
Q 016257          189 -WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR--GDKALLAVYDISTWNKI--GHK-RLLRKPASVLSISLDGKYLAMG  262 (392)
Q Consensus       189 -~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~--~~~-~~~~~~v~~~~~s~~~~~l~~~  262 (392)
                       ...+..........+ -+ ++...+   +.+.  +.++.|...++......  ..+ ..+...+..-.++..+.+|+..
T Consensus       278 ~~~~~~~~~~~~~~~~-~~-~~~~~~---~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~  352 (430)
T d1qfma1         278 KWVKLIDNFEGEYDYV-TN-EGTVFT---FKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC  352 (430)
T ss_dssp             CCEEEECSSSSCEEEE-EE-ETTEEE---EEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred             ceeEeecccccceEEE-ec-CCceee---cccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEE
Confidence             111221222122222 12 222211   2222  23467777777654321  122 2233344433444444565544


Q ss_pred             e-CCC--cEEEEecCCceeeeeeeccccCcceEEEEEeeCC
Q 016257          263 S-KDG--DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (392)
Q Consensus       263 ~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~  300 (392)
                      - .++  .|+++++.+++...... .. .+.+..+...++.
T Consensus       353 ~~~~~~~~l~v~~~~~~~~~~~~~-~~-~~sv~~~~~~~~~  391 (430)
T d1qfma1         353 YLHDVKNTLQLHDLATGALLKIFP-LE-VGSVVGYSGQKKD  391 (430)
T ss_dssp             EEETTEEEEEEEETTTCCEEEEEC-CC-SSEEEEEECCTTC
T ss_pred             EEcCCEeEEEEEECCCCcEEEecC-CC-CceEeeccCCCCC
Confidence            3 454  48889988877654432 22 3444444433433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.55  E-value=0.23  Score=43.98  Aligned_cols=55  Identities=9%  Similarity=-0.015  Sum_probs=38.4

Q ss_pred             CcEEEEecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecCccc
Q 016257          266 GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADW  323 (392)
Q Consensus       266 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  323 (392)
                      |.|.-+|+.+++..-.....   .++..-..+..|.++++|+.||.++.+|..+++.+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~---~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~L  520 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CeEEEEcCCCCcEEeecCCC---CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEe
Confidence            56777888888876655332   23332234457778889999999999998887763

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.24  E-value=0.29  Score=41.72  Aligned_cols=61  Identities=10%  Similarity=0.144  Sum_probs=39.5

Q ss_pred             CCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccC-CCCCCCCCeEEEEecCC
Q 016257           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKM-PPLQDAGPQKCLSFSVD  123 (392)
Q Consensus        63 ~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~  123 (392)
                      -...++|+|.||++.|++--..|.|++++..++........... ......+....++|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            45788999999999888754579898887666543221111111 11223467889999984

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.22  E-value=0.19  Score=39.59  Aligned_cols=216  Identities=11%  Similarity=0.070  Sum_probs=118.8

Q ss_pred             CceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCC
Q 016257           35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGP  114 (392)
Q Consensus        35 ~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  114 (392)
                      ..+++|+++..      ..+..+.+   .++|.--.|-.+ +.|+..+.. .|+-|+++......+..... ..+ ....
T Consensus        83 ~~LQiFnletK------~klks~~~---~e~VvfWkWis~-~~L~lVT~t-aVYHW~~~g~s~P~k~fdR~-~~L-~~~Q  149 (327)
T d1utca2          83 KTLQIFNIEMK------SKMKAHTM---TDDVTFWKWISL-NTVALVTDN-AVYHWSMEGESQPVKMFDRH-SSL-AGCQ  149 (327)
T ss_dssp             TEEEEEETTTT------EEEEEEEC---SSCCCEEEESSS-SEEEEECSS-EEEEEESSSSCCCEEEEECC-GGG-TTCE
T ss_pred             CeEEEEehhHh------hhhceEEc---CCCcEEEEecCC-CEEEEEcCC-ceEEEcccCCCCchhhhhhc-ccc-cCce
Confidence            34888887733      12222222   457777788644 456655444 49999996544332222211 112 2456


Q ss_pred             eEEEEecCCCCEEEEEe-------CCCcEEEEeCCCCceeecccCCCCcEEEEEecCCC---CeEEEE---cCCCcEEEE
Q 016257          115 QKCLSFSVDGSRFAAGG-------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS---EFLATT---STDGSARIW  181 (392)
Q Consensus       115 v~~~~~s~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~---~~l~~~---~~d~~i~vw  181 (392)
                      |..-..+++.++++..+       -.|.+.+|..+.... +.+.+|......+.+.-+.   +.++.+   ...+++.+-
T Consensus       150 IInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIi  228 (327)
T d1utca2         150 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHII  228 (327)
T ss_dssp             EEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC-ccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEE
Confidence            77778888999876543       236788999876433 3445554443333332211   123322   223678888


Q ss_pred             ECCCCee--------eEEEecCC---CcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEE
Q 016257          182 KTEDGVA--------WTFLTRNS---DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVL  250 (392)
Q Consensus       182 d~~~~~~--------~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~  250 (392)
                      ++.....        ...+..+.   .+-.-++..++....     +..-+.-|.+++||++++.++..-+.....|...
T Consensus       229 Eig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygi-----iyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~  303 (327)
T d1utca2         229 EVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV-----VFLITKYGYIHLYDLETGTCIYMNRISGETIFVT  303 (327)
T ss_dssp             ECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTE-----EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCE-----EEEEecCcEEEEEEcccccEEEEeecCCCceEEe
Confidence            8764211        11111111   122345556655543     4455577899999999999987777666666655


Q ss_pred             EECCCCCEEEEEeCCCcEE
Q 016257          251 SISLDGKYLAMGSKDGDIC  269 (392)
Q Consensus       251 ~~s~~~~~l~~~~~dg~i~  269 (392)
                      +-+.+..=+++...+|.|.
T Consensus       304 a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         304 APHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEETTTTEEEEEETTSEEE
T ss_pred             ccCCCCceEEEECCCCeEE
Confidence            5444444444445566544

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.94  E-value=0.17  Score=41.80  Aligned_cols=187  Identities=9%  Similarity=0.008  Sum_probs=101.0

Q ss_pred             CCeeEEEEcCCCCeEEEEeCCCeEEEEEEeCCccceeecc--ccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeC
Q 016257           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLA--KKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (392)
Q Consensus        64 ~~v~~~~~sp~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~  141 (392)
                      ....-++.++...++++|+.++ +.|..++.-+.......  ........-..|..++|+.|  .|+.. .++.+..++.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDL  112 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEES
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEe
Confidence            3466788888777888888886 77776533211000000  00000001135888999754  55554 3566888887


Q ss_pred             CCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec----CCCcceEEEEecCCCCcceEEEE
Q 016257          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR----NSDEKIELCRFSKDGTKPFLFCT  217 (392)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~  217 (392)
                      .+-...........++..+.++|.  .++....++.+.++++.+++.......    .-...+.+++|++.+.+     +
T Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq-----~  185 (381)
T d1xipa_         113 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQ-----S  185 (381)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEE-----E
T ss_pred             eccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEE-----E
Confidence            654443333333456888888874  466666789999999988754332210    01134777888877776     3


Q ss_pred             EEeCCccEEEEE-eCCCceeeeeecccCCCcEEEEECCCCCEEEEE
Q 016257          218 VQRGDKALLAVY-DISTWNKIGHKRLLRKPASVLSISLDGKYLAMG  262 (392)
Q Consensus       218 ~~~~~d~~i~v~-d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  262 (392)
                      +++..+. ..+- ++.....+.........+.++.|-.+..++++-
T Consensus       186 v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         186 FAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            3332221 1111 111111111111223467889998776666554

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.64  E-value=0.46  Score=39.16  Aligned_cols=179  Identities=10%  Similarity=-0.046  Sum_probs=99.7

Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEeCCC---------CceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEEC
Q 016257          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS---------LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT  183 (392)
Q Consensus       113 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~  183 (392)
                      ...+-++.++...+++.|+.++ +.|...+.         ..........-..|..++|+.+  .++... ++.+..++.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~~-~~~l~~~~~  112 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVST-RNALYSLDL  112 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEEE-SSEEEEEES
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEEe-CCCEEEEEe
Confidence            4567788888777888888775 66665321         0100011111125888999754  455543 466888887


Q ss_pred             CCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeec-----ccCCCcEEEEECCCCCE
Q 016257          184 EDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-----LLRKPASVLSISLDGKY  258 (392)
Q Consensus       184 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~  258 (392)
                      ..-......... ..++..+.++|..       ++....++.+.++++..++......     .....+.+++|++.|+.
T Consensus       113 ~~l~~~~~~~~~-~~~~~~~~~~p~~-------~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq  184 (381)
T d1xipa_         113 EELSEFRTVTSF-EKPVFQLKNVNNT-------LVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQ  184 (381)
T ss_dssp             SSTTCEEEEEEC-SSCEEEEEECSSE-------EEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEE
T ss_pred             eccccccccccc-cccccceecCCce-------eEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEE
Confidence            664443333222 3367888888763       3444457788888888765432211     12356778888888887


Q ss_pred             EEEEeCCCcEEEE-ecCCceeeeeeeccccCcceEEEEEeeCCCeEEEE
Q 016257          259 LAMGSKDGDICVV-DVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA  306 (392)
Q Consensus       259 l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  306 (392)
                      ++++..++ ..+- ++.....+... ... ...|.++.|-.+..++++-
T Consensus       185 ~v~~~g~~-~q~k~~i~~~~~~~~p-~~~-~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         185 SFAWRNGE-MEKQFEFSLPSELEEL-PVE-EYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEEETTE-EEEEEEECCCHHHHTS-CTT-TSEEEEEEESSSSEEEEEE
T ss_pred             EEEeCCCc-eeeccCCCCccccCCC-cCC-CcceeEEEEecCceEEEEE
Confidence            77764322 2111 11111111000 012 3468888888776666554

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.26  E-value=0.59  Score=38.01  Aligned_cols=191  Identities=12%  Similarity=0.013  Sum_probs=104.0

Q ss_pred             CeeEEEEcCCCCeEEEEeC------------CCeEEEEEEeCCccceeeccccC-CCCCCCCCeEEEEe--cCCCC-EEE
Q 016257           65 DPMTIAVNPSGDDFVCSTT------------NGGCKLFEVYGGATDINLLAKKM-PPLQDAGPQKCLSF--SVDGS-RFA  128 (392)
Q Consensus        65 ~v~~~~~sp~~~~l~~~~~------------d~~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~--s~~~~-~l~  128 (392)
                      ....+...|+|..+++++.            .|.+.++|+++.+.......... ......-....+..  .++|. +|+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            4567888899877766532            48899999876543322211110 00001112344444  34565 344


Q ss_pred             EEe---CCCcEEEEeCCCCceeec----ccC-CCCcEEEEEecCCCCeEEEEcC---------------CCcEEEEECCC
Q 016257          129 AGG---VDGHLRIMHWPSLRIILD----EPK-AHKSVLDMDFSLDSEFLATTST---------------DGSARIWKTED  185 (392)
Q Consensus       129 ~~~---~dg~i~i~d~~~~~~~~~----~~~-~~~~i~~i~~~~~~~~l~~~~~---------------d~~i~vwd~~~  185 (392)
                      +..   ...+|.++++........    ... ......++++..++.+++|-..               -....+|....
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            443   356788888754332111    111 1135789999888888887311               12334444443


Q ss_pred             CeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeee--cccCCCcEEEEECCC-CCEEEE
Q 016257          186 GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK--RLLRKPASVLSISLD-GKYLAM  261 (392)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~s~~-~~~l~~  261 (392)
                      ++...... .. .....++++|+++.+    .++....+.|..|++.........  .......-.+.+.++ |.+.+.
T Consensus       196 ~~~~~~~~-~l-~~pNGI~~s~d~~~l----yVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         196 NDVRVVAE-GF-DFANGINISPDGKYV----YIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             SCEEEEEE-EE-SSEEEEEECTTSSEE----EEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             CceEEEcC-CC-CccceeEECCCCCEE----EEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            33322222 21 257899999999863    466667788999998754322211  123445567788764 444443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.94  E-value=0.91  Score=38.49  Aligned_cols=54  Identities=15%  Similarity=0.147  Sum_probs=38.3

Q ss_pred             CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEec-------CCCcceEEEEecCC
Q 016257          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-------NSDEKIELCRFSKD  208 (392)
Q Consensus       155 ~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~  208 (392)
                      ...++|+|.|+++++++--..|.|++++..+++.......       ..+.....++|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4677999999999888765579999998877654332211       11234678999996

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.80  E-value=0.88  Score=33.68  Aligned_cols=225  Identities=14%  Similarity=0.049  Sum_probs=117.2

Q ss_pred             CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEe-cCCCCEEEEE------eCCCcEEEEeCCCCce
Q 016257           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF-SVDGSRFAAG------GVDGHLRIMHWPSLRI  146 (392)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~------~~dg~i~i~d~~~~~~  146 (392)
                      +.+.|+++...|.+.++-+..++... +..         .+|....- .+.-.++..+      -+-..|.+-++.....
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vk-Ltk---------ePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GE   94 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVK-LNR---------EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGE   94 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEE-CCS---------SCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTC
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEE-Eec---------ccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCe
Confidence            34477788889999999888776432 111         12222111 0111122221      1223455556542222


Q ss_pred             eecccCCC-CcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEEEecCCCcceEEEEecCCCCcceEEEEEEeCCccE
Q 016257          147 ILDEPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (392)
Q Consensus       147 ~~~~~~~~-~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~  225 (392)
                      -.++.... -.|.+++.. +.+..++|+......+|-++.++.......+.-+-|+.+    .+.++.-+ .+.++....
T Consensus        95 E~~i~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI----~~d~I~G~-g~~~g~~~s  168 (313)
T d2hu7a1          95 EQRLEAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDI----RGDLIAGL-GFFGGGRVS  168 (313)
T ss_dssp             EEECTTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEE----ETTEEEEE-EEEETTEEE
T ss_pred             eeEecCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEec----cCCeEEEE-eeecCCcce
Confidence            22333333 357777665 345666777777788898887765443332222223322    22221111 122333333


Q ss_pred             EEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeC---CCcEEEEecCCceeeeeeeccc-----cCcceEEEEEe
Q 016257          226 LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK---DGDICVVDVKKMEINHWSKRLH-----LGTSIALVEFC  297 (392)
Q Consensus       226 i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~-----~~~~i~~~~~s  297 (392)
                      ..+-|+.++.. +.+....+.++.....+..+. +++-+   .....-+|+++++.........     ....|+-+-+.
T Consensus       169 fF~adl~SG~l-ri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~  246 (313)
T d2hu7a1         169 LFTSNLSSGGL-RVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYL  246 (313)
T ss_dssp             EEEEETTTEEE-EEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEEC
T ss_pred             EEEEecccCCE-EEecCCCCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeC
Confidence            55555554433 234444556667777776665 33322   1223355888766544321110     13456777799


Q ss_pred             eCCCeEEEEeCCCeEEEEE
Q 016257          298 PTQRVVLTASKEWGAMITK  316 (392)
Q Consensus       298 ~~~~~l~~~~~dg~i~iw~  316 (392)
                      |++++++.+-.||.=+++.
T Consensus       247 Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         247 PDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             TTSCEEEEEEETTEEEEEE
T ss_pred             CCCcEEEEEecCCchheee
Confidence            9999989999999999885

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.72  E-value=1.2  Score=34.76  Aligned_cols=92  Identities=10%  Similarity=0.033  Sum_probs=44.2

Q ss_pred             cEEEEEeCCCceeeeeecccC-CCcEEEEECCCCCEEEEEeCC-----CcEEEEecCCceeeeeeeccccCcceEEEEEe
Q 016257          224 ALLAVYDISTWNKIGHKRLLR-KPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (392)
Q Consensus       224 ~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s  297 (392)
                      ..+..||..+.+......... ....+... .+++.++.|+.+     .....+|..+.+............... ++ .
T Consensus       164 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~-~~-~  240 (288)
T d1zgka1         164 NSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALG-IT-V  240 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE-EE-E
T ss_pred             ceEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccCccCcccceE-EE-E
Confidence            457778877654332211111 11112222 245566666544     357788887766544321111011122 22 2


Q ss_pred             eCCCeEEEEeCCC-----eEEEEEee
Q 016257          298 PTQRVVLTASKEW-----GAMITKLT  318 (392)
Q Consensus       298 ~~~~~l~~~~~dg-----~i~iw~~~  318 (392)
                      .++++++.|+.++     .+.+||+.
T Consensus       241 ~~~~l~v~GG~~~~~~~~~v~~yd~~  266 (288)
T d1zgka1         241 HQGRIYVLGGYDGHTFLDSVECYDPD  266 (288)
T ss_dssp             ETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred             ECCEEEEEecCCCCeecceEEEEECC
Confidence            3778888877653     34555554

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=1.5  Score=34.03  Aligned_cols=54  Identities=15%  Similarity=0.189  Sum_probs=29.1

Q ss_pred             cEEEEEeCCCceeeeeecccCCCc-EEEEECCCCCEEEEEeCCC-----cEEEEecCCcee
Q 016257          224 ALLAVYDISTWNKIGHKRLLRKPA-SVLSISLDGKYLAMGSKDG-----DICVVDVKKMEI  278 (392)
Q Consensus       224 ~~i~v~d~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~  278 (392)
                      .....+|..+.+............ .+++. .++++++.|+.++     .+.+||+.+.+-
T Consensus       211 ~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W  270 (288)
T d1zgka1         211 NSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTW  270 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             cceeeeeecceeeecccCccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCCEE
Confidence            356777877654432211111111 12222 3677888877554     378899987653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=91.84  E-value=2.6  Score=34.06  Aligned_cols=147  Identities=13%  Similarity=0.112  Sum_probs=83.6

Q ss_pred             CeEEEEEEeCCccceeecc-ccCCCCCCCCCeEEEEe--cCC-CC-EEEEEeCCCcEEEEeCC---CCcee---ecccCC
Q 016257           85 GGCKLFEVYGGATDINLLA-KKMPPLQDAGPQKCLSF--SVD-GS-RFAAGGVDGHLRIMHWP---SLRII---LDEPKA  153 (392)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~--s~~-~~-~l~~~~~dg~i~i~d~~---~~~~~---~~~~~~  153 (392)
                      .+|.+|.+........... ...+.......+..+++  ++. |. ++++...+|.+..|.+.   .+...   ......
T Consensus        99 ~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~  178 (353)
T d1h6la_          99 NTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM  178 (353)
T ss_dssp             CEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC
T ss_pred             eeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC
Confidence            3688898875432222111 11111111234666666  664 54 45666778999888763   22221   112233


Q ss_pred             CCcEEEEEecCCCCeEEEEcCCCcEEEEECCC-----CeeeEEEec-CCCcceEEEEecCC--CCcceEEEEEEeCCccE
Q 016257          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTED-----GVAWTFLTR-NSDEKIELCRFSKD--GTKPFLFCTVQRGDKAL  225 (392)
Q Consensus       154 ~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~-----~~~~~~~~~-~~~~~v~~~~~~~~--~~~~~~~~~~~~~~d~~  225 (392)
                      ...+..|.+.+..+.|+.+-++.-+..++...     +..+..... +....+..++.-..  +.. |  .+++...+++
T Consensus       179 ~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~G-y--livSsQG~n~  255 (353)
T d1h6la_         179 NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKG-Y--LLASSQGNSS  255 (353)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCE-E--EEEEEGGGTE
T ss_pred             CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCe-E--EEEEcCCCCe
Confidence            35789999999999999998877676666542     122212211 22345677765543  332 2  2677778899


Q ss_pred             EEEEeCCCc
Q 016257          226 LAVYDISTW  234 (392)
Q Consensus       226 i~v~d~~~~  234 (392)
                      ..+||....
T Consensus       256 f~vydr~~~  264 (353)
T d1h6la_         256 YAIYERQGQ  264 (353)
T ss_dssp             EEEEESSTT
T ss_pred             EEEEecCCC
Confidence            999998763

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.25  E-value=2.9  Score=33.39  Aligned_cols=111  Identities=12%  Similarity=0.015  Sum_probs=67.8

Q ss_pred             CCCeEEEEeCCCeEEEEEEeCCccceeeccccCCCCCCCCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCcee------
Q 016257           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII------  147 (392)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~------  147 (392)
                      ...+|+..+..|.++..++........-.......+.....+..+....+...++.++..|.+..++...-...      
T Consensus       105 ~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~G  184 (323)
T d1wp5a_         105 LNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAG  184 (323)
T ss_dssp             SSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCC
T ss_pred             cceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEEEEEecceeeEeecccccccCccccc
Confidence            35688888999999998875432211111111222335567777877777778888899999999987532211      


Q ss_pred             -eccc-CCCCcEEEE-EecCCCCeEEEEcCCCcEEEEECC
Q 016257          148 -LDEP-KAHKSVLDM-DFSLDSEFLATTSTDGSARIWKTE  184 (392)
Q Consensus       148 -~~~~-~~~~~i~~i-~~~~~~~~l~~~~~d~~i~vwd~~  184 (392)
                       .-+. ...+.+-+. ...+++..++..+..|..+.-.+.
T Consensus       185 V~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~  224 (323)
T d1wp5a_         185 VKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLT  224 (323)
T ss_dssp             EECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred             ccccccccccccchhhhccccccceeeeeeeheeecccch
Confidence             1111 122344443 445566778888888888776654

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=88.62  E-value=5.7  Score=32.84  Aligned_cols=154  Identities=10%  Similarity=0.053  Sum_probs=75.4

Q ss_pred             CCCceeeeecCCCCCcceeEEEeCCCCCCCCCcCceeEEEEcCCCCccccCCceEEEeeCCCCCeeEEEEcCCCC-eEEE
Q 016257            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVC   80 (392)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~~   80 (392)
                      .+++.|.+++++|.++++.+++...+  +        +|.-...+...............+...+.+|+++|... .|+.
T Consensus         9 ~~gg~~~~i~~~P~~~~~~ya~~~~g--G--------v~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~   78 (427)
T d2ebsa1           9 GGGGYITGIVAHPKTKDLLYARTDIG--G--------AYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYL   78 (427)
T ss_dssp             CBCSCEEEEEECSSSTTCEEEEESSS--C--------EEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEE
T ss_pred             CCCCcEEEEEECCCCCCEEEEEecCC--C--------EEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEE
Confidence            35788999999998887444443221  1        66555444333211000000111234688999998653 4444


Q ss_pred             EeCC----CeEEEEEEeCCccceeeccccCCC---CCCCCCeEEEEecCC-CCEEEEEeCCCcEEEEeCCCCceeecc--
Q 016257           81 STTN----GGCKLFEVYGGATDINLLAKKMPP---LQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDE--  150 (392)
Q Consensus        81 ~~~d----~~i~iw~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~--  150 (392)
                      +..+    ....||.-..+.............   .........+.++|. ...++++..++-|.. ....++.-...  
T Consensus        79 ~tg~~~~~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~-S~D~G~tW~~~~~  157 (427)
T d2ebsa1          79 AQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTS  157 (427)
T ss_dssp             EECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEEE-ESSTTSSCEECTT
T ss_pred             EeccccCCcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccceee-ecCCCceeeeccc
Confidence            4321    123466655544333222111110   011234567888984 556767766654432 33333321111  


Q ss_pred             -c---CCCCcEEEEEecCCC
Q 016257          151 -P---KAHKSVLDMDFSLDS  166 (392)
Q Consensus       151 -~---~~~~~i~~i~~~~~~  166 (392)
                       .   .....+..+.++|..
T Consensus       158 ~~~~~~~~~~~~~i~~~p~~  177 (427)
T d2ebsa1         158 IPDAFTNGIGYTSVIFDPER  177 (427)
T ss_dssp             SSCCCCSSSCEEEEEECTTS
T ss_pred             CcccccCCccceEEEecccc
Confidence             1   112247889998854

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=82.11  E-value=8.9  Score=29.29  Aligned_cols=186  Identities=8%  Similarity=-0.106  Sum_probs=86.6

Q ss_pred             CCCeEEEEecCCCCEEEEEeCCCcEEEEeCCCCceeecccCCCCcEEEEEecCCCCeEEEEcCCCcEEEEECCCCeeeEE
Q 016257          112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF  191 (392)
Q Consensus       112 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  191 (392)
                      ...|..++-..  .+.+.-. ||.|..|-.....++-.-......+..++.-. ...++.  .|+.+..|.....-....
T Consensus        25 ~~~i~~va~G~--~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~-~~~~al--~dg~v~~wG~~~~gq~~~   98 (273)
T d1jtdb_          25 QSGVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN-YHSLAL--KDGEVIAWGGNEDGQTTV   98 (273)
T ss_dssp             SSSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECS-SEEEEE--ETTEEEEEECCTTSTTCC
T ss_pred             CCCcEEEEccC--CEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCC-Cceeee--eeeeeeccCCCcceeecc
Confidence            34577776632  2333334 89999997654433221112223455554422 112232  478999997643211111


Q ss_pred             EecCCCcceEEEEecCCCCcceEEEEEEeCCccEEEEEeCCCceeeeeecccCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 016257          192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVV  271 (392)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  271 (392)
                      .. .....+..++......      .+  -.|+.+..|.................+..++-.  ...++ ...++.++.|
T Consensus        99 ~~-~~~~~~~~i~~~~~~~------~~--~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~~~-~~~~g~~~~~  166 (273)
T d1jtdb_          99 PA-EARSGVDAIAAGAWAS------YA--LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VYTAL-AVKNGGVIAW  166 (273)
T ss_dssp             CG-GGGSSCCEEEEETTEE------EE--EETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEE-EEETTEEEEE
T ss_pred             cc-ccccceeEEeeecccc------cc--cccccceecccCCCCceeeeccCCceEEEEecc--ceeee-eecccceeEe
Confidence            00 1111233443332211      11  147788888754332222222223344444432  22333 3347788888


Q ss_pred             ecCCceeeeeeeccccCcceEEEEEeeCCCeEEEEeCCCeEEEEEeecC
Q 016257          272 DVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (392)
Q Consensus       272 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw~~~~~  320 (392)
                      -.......... ... ...|..++...  .+.+.-. ||.|+.|-....
T Consensus       167 G~~~~g~~~~~-~~~-~~~v~~Is~G~--~h~~~l~-dG~v~~WG~n~~  210 (273)
T d1jtdb_         167 GDNYFGQTTVP-AEA-QSGVDDVAGGI--FHSLALK-DGKVIAWGDNRY  210 (273)
T ss_dssp             ECCTTSTTSCC-GGG-SSSEEEEEECS--SEEEEEE-TTEEEEEECCTT
T ss_pred             ecccCCccccc-ccc-cCCccceeccc--eeeEEEe-cCcEEEcCCCCC
Confidence            65443222111 122 45677776543  2333333 799999976543