Citrus Sinensis ID: 016258

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--
Protein Sequence
MTPVCPFAKARPDDASPRKPGENSNKYPAECPFSKARPDDAASRKAVENSAKPQAEHDGDKAKSDSMDSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQLSEKPPESTPKV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccEEccccccccHHHHHcccccccccHHHHHHHccHHHHHHHHHHHccccccccccccccccHHHHccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEHHHHHHHHccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccHHHHcccccccHHHHHccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHcEEEHcccccHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mtpvcpfakarpddasprkpgensnkypaecpfskarpddaasrkavensakpqaehdgdkaksdsmdsasippkcpfgydaqsfkigplsCMICQALLfecskctpcshvyckacisrfkdcplcgadiekieadTTLQDVVDRFIEGHARIkrshtnsdkeedeagenkkVIYEDVSMERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKigdlkyyggdlQAARSYYVRSLNVRRdavkrhsnvpsQVLDVAVSLAKVAdvdrsignedvaVDGFQEAIKRLESltlkpeeaglEQRRLSVLEFLNnqlsekppestpkv
Flexible Loop (DISEMBL)
mtpvcpfakarpddasprkpgensnkypaecpfSKARPDDAASRKAvensakpqaehdgdkaksdsMDSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIEKIEADTTLQDVVDRFIEGHarikrshtnsdkeedeagenkkviyeDVSMERGAFLVQQAMRAFRAQNvesaksrlslCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDavkrhsnvpsqvlDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFlnnqlsekppestpkv
Low Complexity Region (SEG)
MTPVCPFAKARPDDASPRKPGENSNKYPAECPFSKARPDDAASRKAVENSAKPQAEHdgdkaksdsmdsasIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQLSEKPPESTPKV
Disordered region (IsUnstruct)
***************************************************************************CPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIEKIEADTTLQDVVDRFIEGHA*********************VIYEDVSMERGAFLVQQAMRAFRAQ********LSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE*************************************
Disordered Region (DISOPRED)
************************************************************************************FKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ************
Disordered Region (DISEMBL)
*************************KYPAECPFSK***********************************SIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIEKIEADTTLQDVVDRFIEGHARIKR*************ENKKVIYEDVSMERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQL***********
Disordered Region (DISPRO)
**************************************************************************KCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIEKIEADTTLQDVVDRFIEGHARIK***************NKKVIYEDVSMERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQLS**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTPVCPFAKARPDDASPRKPGENSNKYPAECPFSKARPDDAASRKAVENSAKPQAEHDGDKAKSDSMDSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQLSEKPPESTPKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	392	2.2.26 [Sep-21-2011]
Q5FWP4	625	E3 ubiquitin-protein liga	N/A	no	0.216	0.136	0.309	3e-07
A5WW08	637	E3 ubiquitin-protein liga	yes	no	0.155	0.095	0.353	5e-07
Q96EP1	664	E3 ubiquitin-protein liga	yes	no	0.170	0.100	0.352	1e-06
Q810L3	664	E3 ubiquitin-protein liga	yes	no	0.170	0.100	0.352	2e-06
Q6P256	626	E3 ubiquitin-protein liga	yes	no	0.170	0.107	0.352	2e-06
Q5RF77	571	E3 ubiquitin-protein liga	yes	no	0.170	0.117	0.352	2e-06
Q640D5	323	Polycomb complex protein	N/A	no	0.224	0.272	0.265	4e-06
Q91648	326	Polycomb complex protein	N/A	no	0.224	0.269	0.309	7e-06
P25916	324	Polycomb complex protein	no	no	0.153	0.185	0.328	1e-05
Q5R8L2	326	Polycomb complex protein	no	no	0.153	0.184	0.328	1e-05

>sp|Q5FWP4|CHFR_XENLA E3 ubiquitin-protein ligase CHFR OS=Xenopus laevis GN=chfr PE=1 SV=1

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 12/97 (12%)

Query: 72  IPPKCPFGY--DAQSFKIGP------LSCMICQALLFECSKCTPCSHVYCKACISRFKD- 122
           +P  CP G   ++++  + P      L+C+ICQ LL +C    PC H +C AC S + + 
Sbjct: 238 VPASCPIGASDESKTPSMKPDKMEETLTCIICQELLHDCVSLQPCMHTFCAACYSGWMER 297

Query: 123 ---CPLCGADIEKIEADTTLQDVVDRFIEGHARIKRS 156
              CP C   +E+I  +  L ++V+ ++  H    RS
Sbjct: 298 SSLCPTCRCPVERICKNHILNNLVEAYLIQHPEKCRS 334

E3 ubiquitin-protein ligase that functions in the antephase checkpoint by actively delaying passage into mitosis in response to microtubule poisons. Acts in early prophase before chromosome condensation, when the centrosome move apart from each other along the periphery of the nucleus. Probably involved in signaling the presence of mitotic stress caused by microtubule poisons by mediating the 'Lys-48'-linked ubiquitination of target proteins, leading to their degradation by the proteasome. May also promote the formation of 'Lys-63'-linked polyubiquitin chains and functions with the specific ubiquitin-conjugating ubc13-mms2 (ube2n-ube2v2) heterodimer. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation, but are rather involved in signaling cellular stress.
Xenopus laevis (taxid: 8355)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|A5WW08|CHFR_DANRE E3 ubiquitin-protein ligase CHFR OS=Danio rerio GN=chfr PE=2 SV=1

 Score = 55.8 bits (133), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 145
           L+C+ICQ LL++C    PC H +C AC S + +    CP C   +E+I  +  L ++V+ 
Sbjct: 275 LTCIICQDLLYDCISVQPCMHTFCAACYSGWMERSSFCPTCRCPVERIRKNHILNNLVEA 334

Query: 146 FIEGH 150
           ++  H
Sbjct: 335 YLLQH 339

E3 ubiquitin-protein ligase that functions in the antephase checkpoint by actively delaying passage into mitosis in response to microtubule poisons. Acts in early prophase before chromosome condensation, when the centrosome move apart from each other along the periphery of the nucleus. Probably involved in signaling the presence of mitotic stress caused by microtubule poisons by mediating the 'Lys-48'-linked ubiquitination of target proteins, leading to their degradation by the proteasome. May also promote the formation of 'Lys-63'-linked polyubiquitin chains and functions with the specific ubiquitin-conjugating ubc13-mms2 (ube2n-ube2v2) heterodimer. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation, but are rather involved in signaling cellular stress.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q96EP1|CHFR_HUMAN E3 ubiquitin-protein ligase CHFR OS=Homo sapiens GN=CHFR PE=1 SV=2

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 145
           L+C+ICQ LL +C    PC H +C AC S + +    CP C   +E+I  +  L ++V+ 
Sbjct: 302 LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEA 361

Query: 146 FIEGHARIKRS 156
           ++  H    RS
Sbjct: 362 YLIQHPDKSRS 372

E3 ubiquitin-protein ligase that functions in the antephase checkpoint by actively delaying passage into mitosis in response to microtubule poisons. Acts in early prophase before chromosome condensation, when the centrosome move apart from each other along the periphery of the nucleus. Probably involved in signaling the presence of mitotic stress caused by microtubule poisons by mediating the 'Lys-48'-linked ubiquitination of target proteins, leading to their degradation by the proteasome. Promotes the ubiquitination and subsequent degradation of AURKA and PLK1. Probably acts as a tumor suppressor, possibly by mediating the polyubiquitination of HDAC1, leading to its degradation. May also promote the formation of 'Lys-63'-linked polyubiquitin chains and functions with the specific ubiquitin-conjugating UBC13-MMS2 (UBE2N-UBE2V2) heterodimer. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation, but are rather involved in signaling cellular stress.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q810L3|CHFR_MOUSE E3 ubiquitin-protein ligase CHFR OS=Mus musculus GN=Chfr PE=1 SV=1

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 145
           L+C+ICQ LL +C    PC H +C AC S + +    CP C   +E+I  +  L ++V+ 
Sbjct: 301 LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEA 360

Query: 146 FIEGHARIKRS 156
           ++  H    RS
Sbjct: 361 YLIQHPDKSRS 371

E3 ubiquitin-protein ligase that functions in the antephase checkpoint by actively delaying passage into mitosis in response to microtubule poisons. Acts in early prophase before chromosome condensation, when the centrosome move apart from each other along the periphery of the nucleus. Probably involved in signaling the presence of mitotic stress caused by microtubule poisons by mediating the 'Lys-48'-linked ubiquitination of target proteins, leading to their degradation by the proteasome. Promotes the ubiquitination and subsequent degradation of AURKA and PLK1. Probably acts as a tumor suppressor, possibly by mediating the polyubiquitination of HDAC1, leading to its degradation. May also promote the formation of 'Lys-63'-linked polyubiquitin chains and functions with the specific ubiquitin-conjugating UBC13-MMS2 (UBE2N-UBE2V2) heterodimer. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation, but are rather involved in signaling cellular stress.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6P256|CHFR_XENTR E3 ubiquitin-protein ligase CHFR OS=Xenopus tropicalis GN=chfr PE=2 SV=1

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 145
           L+C+ICQ LL +C    PC H +C AC S + +    CP C   +E+I  +  L ++V+ 
Sbjct: 265 LTCIICQELLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEA 324

Query: 146 FIEGHARIKRS 156
           ++  H    RS
Sbjct: 325 YLIQHPEKCRS 335

E3 ubiquitin-protein ligase that functions in the antephase checkpoint by actively delaying passage into mitosis in response to microtubule poisons. Acts in early prophase before chromosome condensation, when the centrosome move apart from each other along the periphery of the nucleus. Probably involved in signaling the presence of mitotic stress caused by microtubule poisons by mediating the 'Lys-48'-linked ubiquitination of target proteins, leading to their degradation by the proteasome. May also promote the formation of 'Lys-63'-linked polyubiquitin chains and functions with the specific ubiquitin-conjugating ubc13-mms2 (ube2n-ube2v2) heterodimer. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation, but are rather involved in signaling cellular stress.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5RF77|CHFR_PONAB E3 ubiquitin-protein ligase CHFR OS=Pongo abelii GN=CHFR PE=2 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 145
           L+C+ICQ LL +C    PC H +C AC S + +    CP C   +E+I  +  L ++V+ 
Sbjct: 210 LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEA 269

Query: 146 FIEGHARIKRS 156
           ++  H    RS
Sbjct: 270 YLIQHPDKSRS 280

E3 ubiquitin-protein ligase that functions in the antephase checkpoint by actively delaying passage into mitosis in response to microtubule poisons. Acts in early prophase before chromosome condensation, when the centrosome move apart from each other along the periphery of the nucleus. Probably involved in signaling the presence of mitotic stress caused by microtubule poisons by mediating the 'Lys-48'-linked ubiquitination of target proteins, leading to their degradation by the proteasome. Promotes the ubiquitination and subsequent degradation of AURKA and PLK1. Probably acts as a tumor suppressor, possibly by mediating the polyubiquitination of HDAC1, leading to its degradation. May also promote the formation of 'Lys-63'-linked polyubiquitin chains and functions with the specific ubiquitin-conjugating UBC13-MMS2 (UBE2N-UBE2V2) heterodimer. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation, but are rather involved in signaling cellular stress.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q640D5|BMI1B_XENLA Polycomb complex protein BMI-1-B OS=Xenopus laevis GN=bmi1b PE=2 SV=1

 Score = 53.1 bits (126), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 25/113 (22%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
           L C++C     + +    C H +CK CI R+    K CP+C   + K      I AD TL
Sbjct: 16  LMCVLCGGYFIDAATIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRADKTL 75

Query: 140 QDVVDRFIEG---------------HARIKRSHTNSDKEEDEAGENKKVIYED 177
           QD+V + + G               H  +  ++ +++   + A E+K++I +D
Sbjct: 76  QDIVYKLVPGLFKGEMKRRRDFYAAHPSVDAANGSNEDRGEVADEDKRIITDD 128

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility. In the PRC1 complex, it is required to stimulate the E3 ubiquitin-protein ligase activity of rnf2.

Xenopus laevis (taxid: 8355)

>sp|Q91648|BMI1A_XENLA Polycomb complex protein BMI-1-A OS=Xenopus laevis GN=bmi1a PE=1 SV=1

 Score = 52.0 bits (123), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 25/113 (22%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
           L C++C     + +    C H +CK CI R+    K CP+C   + K      I AD TL
Sbjct: 16  LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRADKTL 75

Query: 140 QDVVDRFIEG--HARIKR------SHTNSD----KEEDE---AGENKKVIYED 177
           QD+V + + G     +KR      +H ++D      ED    A E+K++I +D
Sbjct: 76  QDIVYKLVPGLFKGEMKRRRDFYAAHPSADVANGSNEDRGEVADEDKRIITDD 128

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility. In the PRC1 complex, it is required to stimulate the E3 ubiquitin-protein ligase activity of rnf2.

Xenopus laevis (taxid: 8355)

>sp|P25916|BMI1_MOUSE Polycomb complex protein BMI-1 OS=Mus musculus GN=Bmi1 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
           L C++C     + +    C H +CK CI R+    K CP+C   + K      I +D TL
Sbjct: 16  LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 75

Query: 140 QDVVDRFIEG 149
           QD+V + + G
Sbjct: 76  QDIVYKLVPG 85

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility. In the PRC1 complex, it is required to stimulate the E3 ubiquitin-protein ligase activity of RNF2/RING2.

Mus musculus (taxid: 10090)

>sp|Q5R8L2|BMI1_PONAB Polycomb complex protein BMI-1 OS=Pongo abelii GN=BMI1 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
           L C++C     + +    C H +CK CI R+    K CP+C   + K      I +D TL
Sbjct: 16  LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 75

Query: 140 QDVVDRFIEG 149
           QD+V + + G
Sbjct: 76  QDIVYKLVPG 85

Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility. In the PRC1 complex, it is required to stimulate the E3 ubiquitin-protein ligase activity of RNF2/RING2.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
118489075	363	unknown [Populus trichocarpa x Populus d	0.910	0.983	0.762	1e-162
225465383	369	PREDICTED: uncharacterized protein LOC10	0.933	0.991	0.727	1e-159
296085428	394	unnamed protein product [Vitis vinifera]	0.933	0.928	0.727	1e-159
224053090	363	predicted protein [Populus trichocarpa]	0.910	0.983	0.741	1e-159
356508245	367	PREDICTED: uncharacterized protein LOC10	0.928	0.991	0.715	1e-154
224075908	353	predicted protein [Populus trichocarpa]	0.872	0.968	0.755	1e-154
255569221	392	ubiquitin-protein ligase, putative [Rici	0.971	0.971	0.704	1e-152
297820180	415	binding protein [Arabidopsis lyrata subs	0.964	0.910	0.693	1e-151
356517714	367	PREDICTED: uncharacterized protein LOC10	0.928	0.991	0.707	1e-150
449458710	404	PREDICTED: uncharacterized protein LOC10	0.964	0.935	0.669	1e-150

>gi|118489075|gb|ABK96344.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 295/387 (76%), Positives = 319/387 (82%), Gaps = 30/387 (7%)

Query: 1   MTPVCPFAKA-RPDDASPRKPGENSNKYPAECPFSKARPDDAASRKAVENSAKPQAEHD- 58
           MTPVCPF KA RPDD SPRKPG        ECP                   K  AEH+ 
Sbjct: 1   MTPVCPFVKASRPDDGSPRKPG--------ECPI------------------KHGAEHEG 34

Query: 59  GDKAKSDS-MDSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACI 117
           G KAK +S  +SA++ PKCPFGYD+Q+FK+GPLSCMICQALLF+CSKC PCSHVYCK CI
Sbjct: 35  GGKAKKESGGESATVSPKCPFGYDSQTFKLGPLSCMICQALLFDCSKCVPCSHVYCKVCI 94

Query: 118 SRFKDCPLCGADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYED 177
           SRFKDCPLCGAD+EKIEADT LQ VVDRFI+GHARIKRSH + DK E EAGENKKVIYED
Sbjct: 95  SRFKDCPLCGADVEKIEADTDLQSVVDRFIDGHARIKRSHVDMDK-EGEAGENKKVIYED 153

Query: 178 VSMERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGML 237
           VS+ERGAFLVQQAMRAFRAQNVESAKSRLSLC EDIR +IE +GNTSELCSQLGAVLGML
Sbjct: 154 VSLERGAFLVQQAMRAFRAQNVESAKSRLSLCAEDIRGRIETVGNTSELCSQLGAVLGML 213

Query: 238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARS 297
           GDCCRA+GDA +AV YF +SVEFL KL   DLEI HT SVSLNKIGDLKYY GDL+AARS
Sbjct: 214 GDCCRAVGDAGSAVTYFEESVEFLSKLAAADLEITHTHSVSLNKIGDLKYYDGDLEAARS 273

Query: 298 YYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357
           YY+RSLNVRRDA+K H +V SQ LDVAVSLAKVAD DRSIGNED A+D F EAIK LESL
Sbjct: 274 YYMRSLNVRRDAIKHHPSVSSQTLDVAVSLAKVADADRSIGNEDAALDRFHEAIKLLESL 333

Query: 358 TLKPEEAGLEQRRLSVLEFLNNQLSEK 384
           TLKPEEAGLEQRRLSVLEFLNNQL+EK
Sbjct: 334 TLKPEEAGLEQRRLSVLEFLNNQLAEK 360

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465383|ref|XP_002276838.1| PREDICTED: uncharacterized protein LOC100262520 [Vitis vinifera]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 280/385 (72%), Positives = 316/385 (82%), Gaps = 19/385 (4%)

Query: 1   MTPVCPFAKA-RPDDASPRKPGENSNKYPAECPFSKARPDDAASRKAVENSAKPQAEHDG 59
           MTPVCPF KA RPDDA+ RKP E  +K+  E    K + D                  D 
Sbjct: 1   MTPVCPFVKAARPDDATSRKPNECPHKHQLELE-GKGKKDSG----------------DS 43

Query: 60  DKAKSDSMDSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISR 119
              K DS+D+ASI PKCPFGYD+Q+FK+GPLSCMICQALLFE SKC PCSHVYCKACISR
Sbjct: 44  ASTKKDSVDAASISPKCPFGYDSQTFKLGPLSCMICQALLFESSKCVPCSHVYCKACISR 103

Query: 120 FKDCPLCGADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVS 179
           FKDCPLCGADIEKIEAD  LQ+ VDRFIEGH RIKR H N+D EE   G++K VIYEDVS
Sbjct: 104 FKDCPLCGADIEKIEADMNLQNTVDRFIEGHGRIKRPHVNTDSEE-AVGDDKTVIYEDVS 162

Query: 180 MERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGD 239
           +ERGAFLVQ AMRAFRA NVESAKSRLS+C EDIR Q+E++GNTSELCSQLGAVLGMLGD
Sbjct: 163 LERGAFLVQHAMRAFRANNVESAKSRLSICAEDIRGQLEKLGNTSELCSQLGAVLGMLGD 222

Query: 240 CCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYY 299
           CCRA GDAD+AV YF +SV+FL KLP DDLEI HTLSVSLNKIGDLKYY GDL+AARSYY
Sbjct: 223 CCRATGDADSAVTYFEESVDFLRKLPADDLEITHTLSVSLNKIGDLKYYDGDLEAARSYY 282

Query: 300 VRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 359
            +SL+VRR+A+K  SNVPSQ+LDVAVSLAKVADV+R++GNEDVA++GF+EAIK LESLTL
Sbjct: 283 SQSLDVRRNAIKDRSNVPSQILDVAVSLAKVADVNRNVGNEDVAINGFEEAIKLLESLTL 342

Query: 360 KPEEAGLEQRRLSVLEFLNNQLSEK 384
             EEAGLEQRRLSV+EFLN Q++EK
Sbjct: 343 SSEEAGLEQRRLSVMEFLNKQIAEK 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085428|emb|CBI29160.3| unnamed protein product [Vitis vinifera]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 280/385 (72%), Positives = 316/385 (82%), Gaps = 19/385 (4%)

Query: 1   MTPVCPFAKA-RPDDASPRKPGENSNKYPAECPFSKARPDDAASRKAVENSAKPQAEHDG 59
           MTPVCPF KA RPDDA+ RKP E  +K+  E    K + D                  D 
Sbjct: 26  MTPVCPFVKAARPDDATSRKPNECPHKHQLELE-GKGKKDSG----------------DS 68

Query: 60  DKAKSDSMDSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISR 119
              K DS+D+ASI PKCPFGYD+Q+FK+GPLSCMICQALLFE SKC PCSHVYCKACISR
Sbjct: 69  ASTKKDSVDAASISPKCPFGYDSQTFKLGPLSCMICQALLFESSKCVPCSHVYCKACISR 128

Query: 120 FKDCPLCGADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVS 179
           FKDCPLCGADIEKIEAD  LQ+ VDRFIEGH RIKR H N+D EE   G++K VIYEDVS
Sbjct: 129 FKDCPLCGADIEKIEADMNLQNTVDRFIEGHGRIKRPHVNTDSEE-AVGDDKTVIYEDVS 187

Query: 180 MERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGD 239
           +ERGAFLVQ AMRAFRA NVESAKSRLS+C EDIR Q+E++GNTSELCSQLGAVLGMLGD
Sbjct: 188 LERGAFLVQHAMRAFRANNVESAKSRLSICAEDIRGQLEKLGNTSELCSQLGAVLGMLGD 247

Query: 240 CCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYY 299
           CCRA GDAD+AV YF +SV+FL KLP DDLEI HTLSVSLNKIGDLKYY GDL+AARSYY
Sbjct: 248 CCRATGDADSAVTYFEESVDFLRKLPADDLEITHTLSVSLNKIGDLKYYDGDLEAARSYY 307

Query: 300 VRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 359
            +SL+VRR+A+K  SNVPSQ+LDVAVSLAKVADV+R++GNEDVA++GF+EAIK LESLTL
Sbjct: 308 SQSLDVRRNAIKDRSNVPSQILDVAVSLAKVADVNRNVGNEDVAINGFEEAIKLLESLTL 367

Query: 360 KPEEAGLEQRRLSVLEFLNNQLSEK 384
             EEAGLEQRRLSV+EFLN Q++EK
Sbjct: 368 SSEEAGLEQRRLSVMEFLNKQIAEK 392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053090|ref|XP_002297702.1| predicted protein [Populus trichocarpa] gi|222844960|gb|EEE82507.1| predicted protein [Populus trichocarpa]

 Score =  567 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 287/387 (74%), Positives = 318/387 (82%), Gaps = 30/387 (7%)

Query: 1   MTPVCPFAKA-RPDDASPRKPGENSNKYPAECPFSKARPDDAASRKAVENSAKPQAEHD- 58
           MT VCP  KA RPDD S RKPG        ECP                   K  AEH+ 
Sbjct: 1   MTTVCPLVKASRPDDGSSRKPG--------ECP------------------EKHAAEHEG 34

Query: 59  GDKAKSDSMD-SASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACI 117
           G KAK +S+  SA++ PKCPFGYD+Q+FK+GP SCMICQALLF+CSKC PCSHVYCK CI
Sbjct: 35  GGKAKKESVGASATVSPKCPFGYDSQTFKLGPHSCMICQALLFDCSKCVPCSHVYCKVCI 94

Query: 118 SRFKDCPLCGADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYED 177
           SRFKDCPLCGADIE+IEADT LQ VVDRF++GHARIKRSH + DK E + GENKKVIYED
Sbjct: 95  SRFKDCPLCGADIERIEADTDLQSVVDRFVDGHARIKRSHVDMDK-EGKVGENKKVIYED 153

Query: 178 VSMERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGML 237
           VS+ERGAFLVQQAMRAFRAQNVESA+SRLSLC EDIR QIE  G+TSELCSQLGAVLGML
Sbjct: 154 VSLERGAFLVQQAMRAFRAQNVESARSRLSLCAEDIRGQIEIAGSTSELCSQLGAVLGML 213

Query: 238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARS 297
           GDCCR+MGDA +AV+YF +SVEFL KLP  DLEI+HTLSVSLNKIGDLKYY GDL+AARS
Sbjct: 214 GDCCRSMGDAGSAVSYFEESVEFLSKLPAADLEIMHTLSVSLNKIGDLKYYDGDLEAARS 273

Query: 298 YYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357
           YY+RSLNVRRDA+K H +V SQ LDVAVSLAKVADVDR+IGNED A+D F++AIK LESL
Sbjct: 274 YYIRSLNVRRDAIKHHPSVSSQTLDVAVSLAKVADVDRTIGNEDAALDRFRDAIKLLESL 333

Query: 358 TLKPEEAGLEQRRLSVLEFLNNQLSEK 384
           TLKPEEAGLEQRRLSVLEFLN QL+EK
Sbjct: 334 TLKPEEAGLEQRRLSVLEFLNTQLAEK 360

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508245|ref|XP_003522869.1| PREDICTED: uncharacterized protein LOC100813258 [Glycine max]

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 281/393 (71%), Positives = 316/393 (80%), Gaps = 29/393 (7%)

Query: 1   MTPVCPFAKARPDDASPRKPGENSNKYPAECPFSKARPDDA-ASRKAVENSAKPQAEHDG 59
           MTPVCPF KA                         ARPDD  AS+K+ ENS K QAE + 
Sbjct: 3   MTPVCPFVKA-------------------------ARPDDNNASKKSGENSMKHQAESES 37

Query: 60  DKAKSDSMDSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISR 119
            K K +  DSAS  PKCPFGYD+QSFKIGPLSC +CQALLF+ SKC PCSHV+CKACISR
Sbjct: 38  -KVKKEVNDSASTSPKCPFGYDSQSFKIGPLSCTVCQALLFDTSKCVPCSHVFCKACISR 96

Query: 120 FKDCPLCGADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVS 179
           FKDCPLCGADI KIE D  LQ VVDRFIEGHARIKRS  ++DK E EA E+K+VIYEDVS
Sbjct: 97  FKDCPLCGADIVKIEPDANLQGVVDRFIEGHARIKRS-VSADKGE-EAAESKQVIYEDVS 154

Query: 180 MERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGD 239
           +ERG+FLVQQAMRAFRAQN+ESAKSRL+ C EDIRDQ+E++GNTSELCSQLGAVLGMLGD
Sbjct: 155 LERGSFLVQQAMRAFRAQNLESAKSRLNFCAEDIRDQLEKVGNTSELCSQLGAVLGMLGD 214

Query: 240 CCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYY 299
           CCRAMGDA +AVAYF +SV+FL KLP DDLEI HTLSVSLNKIGDLKYY GDLQAARSYY
Sbjct: 215 CCRAMGDASSAVAYFEESVQFLSKLPKDDLEITHTLSVSLNKIGDLKYYDGDLQAARSYY 274

Query: 300 VRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 359
            +SLNVRRDAVK +SNVPSQVLDVAVSLAKVADVDR++G+E +A DGFQEAI  LESLTL
Sbjct: 275 FKSLNVRRDAVKHNSNVPSQVLDVAVSLAKVADVDRNLGDEKLATDGFQEAIDLLESLTL 334

Query: 360 KPEEAGLEQRRLSVLEFLNNQLSEKPPESTPKV 392
           K E +GLEQRR SV++FL +QL +K  ++   V
Sbjct: 335 KSEASGLEQRRQSVIDFLRSQLPDKQEQAEATV 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075908|ref|XP_002304823.1| predicted protein [Populus trichocarpa] gi|222842255|gb|EEE79802.1| predicted protein [Populus trichocarpa]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 281/372 (75%), Positives = 304/372 (81%), Gaps = 30/372 (8%)

Query: 1   MTPVCPFAKA-RPDDASPRKPGENSNKYPAECPFSKARPDDAASRKAVENSAKPQAEHD- 58
           MTPVCPF KA RPDD SPRKPG        ECP                   K  AEH+ 
Sbjct: 1   MTPVCPFVKASRPDDGSPRKPG--------ECPI------------------KHGAEHEG 34

Query: 59  GDKAKSDS-MDSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACI 117
           G KAK +S  +SA++ PKCPFGYD+Q+FK+GPLSCMICQALLF+CSKC PCSHVYCK CI
Sbjct: 35  GGKAKKESGGESATVSPKCPFGYDSQTFKLGPLSCMICQALLFDCSKCVPCSHVYCKVCI 94

Query: 118 SRFKDCPLCGADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYED 177
           SRFKDCPLCGAD+EKIEADT LQ VVDRFI+GHARIKRSH + DK E EAGENKKVIYED
Sbjct: 95  SRFKDCPLCGADVEKIEADTDLQSVVDRFIDGHARIKRSHVDMDK-EGEAGENKKVIYED 153

Query: 178 VSMERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGML 237
           VS+ERGAFLVQQAMRAFRAQNVESAKSRLSLC EDIR +IE +GNTSELCSQLGAVLGML
Sbjct: 154 VSLERGAFLVQQAMRAFRAQNVESAKSRLSLCAEDIRGRIETVGNTSELCSQLGAVLGML 213

Query: 238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARS 297
           GDCCRA+GDA +AV YF +SVEFL KL   DLEI HT SVSLNKIGDLKYY GDL+AARS
Sbjct: 214 GDCCRAVGDAGSAVTYFEESVEFLSKLAAADLEITHTHSVSLNKIGDLKYYDGDLEAARS 273

Query: 298 YYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL 357
           YY+RSLNVRRDA+K H +V SQ LDVAVSLAKVAD DRSIGNED A+D F EAIK LESL
Sbjct: 274 YYMRSLNVRRDAIKHHPSVSSQTLDVAVSLAKVADADRSIGNEDAALDRFHEAIKLLESL 333

Query: 358 TLKPEEAGLEQR 369
           TLKPEEAGLEQR
Sbjct: 334 TLKPEEAGLEQR 345

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569221|ref|XP_002525579.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223535158|gb|EEF36838.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 274/389 (70%), Positives = 311/389 (79%), Gaps = 8/389 (2%)

Query: 1   MTPVCPFAKA-RPDDASPRKPGENSNKYPAECPFSKARPDDAASRKAVENSAKPQAEHDG 59
           MTPVCPF KA RPDD+  +K  EN +K+  E    KA+ +      +V NS  P+     
Sbjct: 1   MTPVCPFVKASRPDDSPAKKTSENQSKHGQELEL-KAKKESCGGGDSV-NSNSPKCPFGY 58

Query: 60  DKAKSDSMDS----ASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKA 115
           D   +D+  S    A+IP KCP GYD++SFKIGPLSC+ICQALLF+ +KC PC+H++CKA
Sbjct: 59  DSVNADANASPKSAATIPAKCPLGYDSRSFKIGPLSCIICQALLFDTTKCVPCNHIFCKA 118

Query: 116 CISRFKDCPLCGADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIY 175
           C+S F+DCPLCGADIEK EA+  LQ  VDRFIEGHARIKRSH N   EE+E GEN KVIY
Sbjct: 119 CVSPFRDCPLCGADIEKFEAEMNLQATVDRFIEGHARIKRSHINK-HEEEEVGENTKVIY 177

Query: 176 EDVSMERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLG 235
           EDVS+ERGAFLVQ AMRAFRA+N ESAKSRLSLC EDIR QIE  GNT ELCSQLGAVLG
Sbjct: 178 EDVSLERGAFLVQHAMRAFRAKNFESAKSRLSLCAEDIRGQIEAAGNTPELCSQLGAVLG 237

Query: 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAA 295
           MLGDCCRAMGDA +AVAYF +SVEFL K P DD E++HTLSVSLNKIGDLKYY GDL+AA
Sbjct: 238 MLGDCCRAMGDAGSAVAYFEESVEFLSKFPTDDQEVMHTLSVSLNKIGDLKYYDGDLEAA 297

Query: 296 RSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355
           +SYY RSLNVRRDA++ H +V SQ LDVAVSLAKVAD DRS+GNED AV  FQEAIK LE
Sbjct: 298 KSYYSRSLNVRRDAIEHHPHVSSQSLDVAVSLAKVADADRSLGNEDAAVSRFQEAIKLLE 357

Query: 356 SLTLKPEEAGLEQRRLSVLEFLNNQLSEK 384
           SLTLKPEEA L+QRRLSVLEFLNNQL+EK
Sbjct: 358 SLTLKPEEAALDQRRLSVLEFLNNQLAEK 386

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820180|ref|XP_002877973.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297323811|gb|EFH54232.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 267/385 (69%), Positives = 314/385 (81%), Gaps = 7/385 (1%)

Query: 5   CPFAKA-RPDDASPRKPGENSNKYPAECPFSKA-RPDDAASRKAVENSAKPQAEHDGDKA 62
           CPF+KA RPDDAS RK GE +    + CPFSKA RPDDA++RK  E ++    EH+G K 
Sbjct: 30  CPFSKAARPDDASARKQGEIT---ASGCPFSKAARPDDASARKQDEIASNGCPEHEG-KL 85

Query: 63  KSDSMDSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKD 122
             DS DSA++P KCPFGYD+Q+FK+GP SCM+CQALL+E S+C PC+HV+CK C+SRF D
Sbjct: 86  NKDSTDSATVPAKCPFGYDSQTFKLGPFSCMLCQALLYESSRCVPCTHVFCKVCVSRFND 145

Query: 123 CPLCGADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMER 182
           CPLCGADIE IE D  LQ +VD+FIEGHARIKRS  N  ++E+   +NKKVIY DVSMER
Sbjct: 146 CPLCGADIESIEVDENLQKMVDQFIEGHARIKRSVVNGTEKEEIENDNKKVIYADVSMER 205

Query: 183 GAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCR 242
           G+FLVQQAMRAF AQN ESAKSRL++CTEDIRDQ+ R GNT ELCSQLGAVLGMLGDC R
Sbjct: 206 GSFLVQQAMRAFSAQNYESAKSRLAMCTEDIRDQLGREGNTPELCSQLGAVLGMLGDCSR 265

Query: 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRS 302
           AMGD+ +AV +F +SVEFLMKLP++DLEI HTLSVSLNKIGDLKYY  DLQAARSYY R+
Sbjct: 266 AMGDSSSAVKHFEESVEFLMKLPLNDLEITHTLSVSLNKIGDLKYYDEDLQAARSYYDRA 325

Query: 303 LNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPE 362
           LNVRRDA+K H N PSQ+LDVAVSLAKVAD+DR++ NE  A DGF+E +K LESL L  E
Sbjct: 326 LNVRRDAMKHHPNAPSQILDVAVSLAKVADIDRTLQNEVAATDGFKEGMKLLESLKLDSE 385

Query: 363 EAGLEQRRLSVLEFLNNQLSEKPPE 387
           ++ LEQRRLSVLEFL  Q+ EKP +
Sbjct: 386 DSALEQRRLSVLEFLKKQV-EKPEQ 409

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517714|ref|XP_003527531.1| PREDICTED: uncharacterized protein LOC100813844 [Glycine max]

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 278/393 (70%), Positives = 311/393 (79%), Gaps = 29/393 (7%)

Query: 1   MTPVCPFAKA-RPDDASPRKPGENSNKYPAECPFSKARPDDAASRKAVENSAKPQAEHDG 59
           MTPVCPF KA RPDD                         + AS+K+ ENS K Q E + 
Sbjct: 3   MTPVCPFVKASRPDD-------------------------NNASKKSGENSMKHQVESES 37

Query: 60  DKAKSDSMDSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISR 119
            K K +  DSAS  PKCPFGYD+ SFKIGPLSC +CQALLF+ SKC PCSHV+CKACI R
Sbjct: 38  -KGKKEVNDSASTSPKCPFGYDSHSFKIGPLSCTVCQALLFDTSKCVPCSHVFCKACILR 96

Query: 120 FKDCPLCGADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVS 179
           FKDCPLCGADI KIE D  LQ VVD FIEGHARIKRS  +SDK E EA E+KKVIYEDVS
Sbjct: 97  FKDCPLCGADIVKIEPDANLQGVVDHFIEGHARIKRS-VSSDKGE-EATESKKVIYEDVS 154

Query: 180 MERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGD 239
           +ERG+FLVQQAMRAFRAQN+ESAKSRL+LC EDIRDQ+E++GNTSELCSQLGAVLGMLGD
Sbjct: 155 LERGSFLVQQAMRAFRAQNLESAKSRLNLCAEDIRDQLEKVGNTSELCSQLGAVLGMLGD 214

Query: 240 CCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYY 299
           CCRAMGDA +AVAYF +SV+FL KLP DDLEI HTLSVSLNKIGDLKYY  DLQAARSYY
Sbjct: 215 CCRAMGDASSAVAYFEESVQFLSKLPKDDLEITHTLSVSLNKIGDLKYYDEDLQAARSYY 274

Query: 300 VRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL 359
            +SLNVRRD VK +SNVPSQVLDVAVSLAKVADVDR++G+E +A DGFQEAI  LESLTL
Sbjct: 275 FKSLNVRRDVVKHNSNVPSQVLDVAVSLAKVADVDRNLGDEKLATDGFQEAIDLLESLTL 334

Query: 360 KPEEAGLEQRRLSVLEFLNNQLSEKPPESTPKV 392
           K E +GLEQRR SVL+FL +QL +K  ++   V
Sbjct: 335 KSEASGLEQRRQSVLDFLRSQLPDKQEQAEAPV 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458710|ref|XP_004147090.1| PREDICTED: uncharacterized protein LOC101210945 [Cucumis sativus] gi|449503311|ref|XP_004161939.1| PREDICTED: uncharacterized LOC101210945 [Cucumis sativus]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 270/403 (66%), Positives = 315/403 (78%), Gaps = 25/403 (6%)

Query: 1   MTPVCPFAK-ARPDDASPRK-PGENSNKYPAECPFSKA-RPDDAASRKAVENSAKP---- 53
           MTPVCPF K ARPDDAS RK  GE++      CPF+K+ R DDA+SRK    SA P    
Sbjct: 1   MTPVCPFVKSARPDDASSRKHQGESA------CPFAKSGRSDDASSRKPQSESACPVSKS 54

Query: 54  ------------QAEHDGDKAKSDSMDSASIPPKCPFGYDAQSFKIGPLSCMICQALLFE 101
                       QAE + + A+ D  D+A    KCPFGYD+Q+FKIGPLSCMICQALLFE
Sbjct: 55  VRSDDASSLKKNQAEAESNGAEKDVADAAGAGGKCPFGYDSQTFKIGPLSCMICQALLFE 114

Query: 102 CSKCTPCSHVYCKACISRFKDCPLCGADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSD 161
           CS+C PC+H++CKACISRF DCPLCGADIEKIEAD  LQ  VDRFIEGHARIKR   NSD
Sbjct: 115 CSRCVPCTHIFCKACISRFNDCPLCGADIEKIEADDNLQATVDRFIEGHARIKRPQVNSD 174

Query: 162 KEEDEAGENKKVIYEDVSMERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMG 221
           KE+++  E+K VIYEDVSMERGAFL+QQAMRAFRAQN+ESAKSRL++C EDIRDQ+E+MG
Sbjct: 175 KEQEKVNESKVVIYEDVSMERGAFLIQQAMRAFRAQNIESAKSRLTVCVEDIRDQLEKMG 234

Query: 222 NTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNK 281
           ++ ELCSQLGAVLG LGDCCRA GDA +A+ +F +SVEFL KLP    EI HTLSVSLNK
Sbjct: 235 SSPELCSQLGAVLGTLGDCCRAAGDAASAIKHFEESVEFLSKLPEKTHEITHTLSVSLNK 294

Query: 282 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNED 341
           IGDLKYY GDL+AARSYY+RSLNVR+DA K H + P+Q+LDVAVSLAKVADVD  +GNED
Sbjct: 295 IGDLKYYEGDLEAARSYYLRSLNVRQDASKHHPDDPAQILDVAVSLAKVADVDSGLGNED 354

Query: 342 VAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQLSEK 384
           +AVD FQE IK LESL+L  E   L+ RR SV++FL  QL+E+
Sbjct: 355 MAVDRFQEGIKLLESLSLNSENPALQHRRESVMKFLEGQLAER 397

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
TAIR|locus:2096179	405	AT3G54360 [Arabidopsis thalian	0.961	0.930	0.649	9.1e-132
UNIPROTKB|Q5T8Z4	150	BMI1 "Polycomb complex protein	0.163	0.426	0.32	2.5e-06
UNIPROTKB|Q5T8Z5	92	BMI1 "Polycomb complex protein	0.163	0.695	0.32	2.5e-06
UNIPROTKB|Q5T8Z6	105	BMI1 "Polycomb complex protein	0.163	0.609	0.32	2.5e-06
ZFIN|ZDB-GENE-030131-3522	637	chfr "checkpoint with forkhead	0.201	0.124	0.325	3.5e-06
UNIPROTKB|Q5FWP4	625	chfr "E3 ubiquitin-protein lig	0.216	0.136	0.319	7.3e-06
UNIPROTKB|F5GWT6	349	CHFR "E3 ubiquitin-protein lig	0.201	0.226	0.325	7.7e-06
UNIPROTKB|E1BBP0	663	CHFR "Uncharacterized protein"	0.318	0.188	0.284	1.3e-05
MGI|MGI:2444898	664	Chfr "checkpoint with forkhead	0.364	0.215	0.277	1.7e-05
UNIPROTKB|Q5RF77	571	CHFR "E3 ubiquitin-protein lig	0.201	0.138	0.325	1.8e-05

TAIR|locus:2096179 AT3G54360 [Arabidopsis thaliana (taxid:3702)]

 Score = 1292 (459.9 bits), Expect = 9.1e-132, P = 9.1e-132
 Identities = 258/397 (64%), Positives = 303/397 (76%)

Query:     2 TPVCPFAKA-RPDDASPRKPGENSNKYPAECPFSKA-RPDDAASRKAVEN---------S 50
             T VCPF+KA RPDD S RK GE +    + CPFSKA RPDDA++RK  E          S
Sbjct:     4 TSVCPFSKAARPDDGSTRKQGEIT---ASGCPFSKAARPDDASARKQGETTASGCPFSKS 60

Query:    51 AKPQAE------HXXXXXXXXXXXXXXIPPKCPFGYDAQSFKIGPLSCMICQALLFECSK 104
             A+P                        +P KCPFGYD+Q+FK+GP SCM+CQALL+E S+
Sbjct:    61 ARPDENGSKGCPEQEGNLNKDSTDSATVPAKCPFGYDSQTFKLGPFSCMLCQALLYESSR 120

Query:   105 CTPCSHVYCKACISRFKDCPLCGADIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEE 164
             C PC+HV+CK C++RFKDCPLCGADIE IE D  LQ +VD+FIEGHARIKRS  N  ++E
Sbjct:   121 CVPCTHVFCKVCLTRFKDCPLCGADIESIEVDENLQKMVDQFIEGHARIKRSVVNGTEKE 180

Query:   165 DEAGENKKVIYEDVSMERGAFLVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTS 224
             +   +NKKVIY DVSMERG+FLVQQAMRAF AQN ESAKSRL++CTEDIRDQ+ R GNT 
Sbjct:   181 EVENDNKKVIYADVSMERGSFLVQQAMRAFSAQNYESAKSRLAMCTEDIRDQLGREGNTP 240

Query:   225 ELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGD 284
             ELCSQLGAVLGMLGDC RAMGD+ +AV +F +SVEFLMKLP++DLEI HTLSVSLNKIGD
Sbjct:   241 ELCSQLGAVLGMLGDCSRAMGDSSSAVKHFEESVEFLMKLPLNDLEITHTLSVSLNKIGD 300

Query:   285 LKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAV 344
             LKYY  DLQAARSYY R+LNVRRDA+K H N PSQ+LDVAVSLAKVAD+DR++ NE  A 
Sbjct:   301 LKYYDEDLQAARSYYDRALNVRRDAMKHHPNAPSQILDVAVSLAKVADIDRTLQNEVAAT 360

Query:   345 DGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQL 381
             DGF+E ++ LESL L  E++ LEQRRLSVLEFL  Q+
Sbjct:   361 DGFKEGMRLLESLKLDSEDSALEQRRLSVLEFLKKQV 397

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5T8Z4 BMI1 "Polycomb complex protein BMI-1" [Homo sapiens (taxid:9606)]

 Score = 116 (45.9 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 24/75 (32%), Positives = 38/75 (50%)

Query:    86 KIGP-LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IE 134
             ++ P L C++C     + +    C H +CK CI R+    K CP+C   + K      I 
Sbjct:    11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIR 70

Query:   135 ADTTLQDVVDRFIEG 149
             +D TLQD+V + + G
Sbjct:    71 SDKTLQDIVYKLVPG 85

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006959 "humoral immune response" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0016573 "histone acetylation" evidence=IEA

GO:0016574 "histone ubiquitination" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

GO:0021903 "rostrocaudal neural tube patterning" evidence=IEA

GO:0030890 "positive regulation of B cell proliferation" evidence=IEA

GO:0031519 "PcG protein complex" evidence=IEA

GO:0033092 "positive regulation of immature T cell proliferation in thymus" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0048103 "somatic stem cell division" evidence=IEA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA

UNIPROTKB|Q5T8Z5 BMI1 "Polycomb complex protein BMI-1" [Homo sapiens (taxid:9606)]

 Score = 116 (45.9 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 24/75 (32%), Positives = 38/75 (50%)

Query:    86 KIGP-LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IE 134
             ++ P L C++C     + +    C H +CK CI R+    K CP+C   + K      I 
Sbjct:    11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIR 70

Query:   135 ADTTLQDVVDRFIEG 149
             +D TLQD+V + + G
Sbjct:    71 SDKTLQDIVYKLVPG 85

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5T8Z6 BMI1 "Polycomb complex protein BMI-1" [Homo sapiens (taxid:9606)]

 Score = 116 (45.9 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 24/75 (32%), Positives = 38/75 (50%)

Query:    86 KIGP-LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IE 134
             ++ P L C++C     + +    C H +CK CI R+    K CP+C   + K      I 
Sbjct:    11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIR 70

Query:   135 ADTTLQDVVDRFIEG 149
             +D TLQD+V + + G
Sbjct:    71 SDKTLQDIVYKLVPG 85

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006959 "humoral immune response" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0016573 "histone acetylation" evidence=IEA

GO:0016574 "histone ubiquitination" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

GO:0021903 "rostrocaudal neural tube patterning" evidence=IEA

GO:0030890 "positive regulation of B cell proliferation" evidence=IEA

GO:0031519 "PcG protein complex" evidence=IEA

GO:0033092 "positive regulation of immature T cell proliferation in thymus" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0048103 "somatic stem cell division" evidence=IEA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA

ZFIN|ZDB-GENE-030131-3522 chfr "checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase" [Danio rerio (taxid:7955)]

 Score = 139 (54.0 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 28/86 (32%), Positives = 46/86 (53%)

Query:    90 LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 145
             L+C+ICQ LL++C    PC H +C AC S + +    CP C   +E+I  +  L ++V+ 
Sbjct:   275 LTCIICQDLLYDCISVQPCMHTFCAACYSGWMERSSFCPTCRCPVERIRKNHILNNLVEA 334

Query:   146 FIEGHARIKRSHTNSDKEEDEAGENK 171
             ++  H   ++  T  D    +A  NK
Sbjct:   335 YLLQHP--EKCRTEDDLRSMDA-RNK 357

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0007093 "mitotic cell cycle checkpoint" evidence=ISS

GO:0000209 "protein polyubiquitination" evidence=ISS

GO:0000166 "nucleotide binding" evidence=ISS

GO:0016605 "PML body" evidence=ISS

GO:0019941 "modification-dependent protein catabolic process" evidence=ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

UNIPROTKB|Q5FWP4 chfr "E3 ubiquitin-protein ligase CHFR" [Xenopus laevis (taxid:8355)]

 Score = 136 (52.9 bits), Expect = 7.3e-06, P = 7.3e-06
 Identities = 31/97 (31%), Positives = 48/97 (49%)

Query:    72 IPPKCPFGYDAQSF--KIGP------LSCMICQALLFECSKCTPCSHVYCKACISRFKD- 122
             +P  CP G   +S    + P      L+C+ICQ LL +C    PC H +C AC S + + 
Sbjct:   238 VPASCPIGASDESKTPSMKPDKMEETLTCIICQELLHDCVSLQPCMHTFCAACYSGWMER 297

Query:   123 ---CPLCGADIEKIEADTTLQDVVDRFIEGHARIKRS 156
                CP C   +E+I  +  L ++V+ ++  H    RS
Sbjct:   298 SSLCPTCRCPVERICKNHILNNLVEAYLIQHPEKCRS 334

GO:0000166 "nucleotide binding" evidence=ISS

GO:0000209 "protein polyubiquitination" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISS

GO:0007093 "mitotic cell cycle checkpoint" evidence=ISS

GO:0016605 "PML body" evidence=IDA

GO:0019941 "modification-dependent protein catabolic process" evidence=ISS

UNIPROTKB|F5GWT6 CHFR "E3 ubiquitin-protein ligase CHFR" [Homo sapiens (taxid:9606)]

 Score = 132 (51.5 bits), Expect = 7.7e-06, P = 7.7e-06
 Identities = 28/86 (32%), Positives = 46/86 (53%)

Query:    90 LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 145
             L+C+ICQ LL +C    PC H +C AC S + +    CP C   +E+I  +  L ++V+ 
Sbjct:   102 LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEA 161

Query:   146 FIEGHARIKRSHTNSDKEEDEAGENK 171
             ++  H    +S +  D +  +A  NK
Sbjct:   162 YLIQHP--DKSRSEEDVQSMDA-RNK 184

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1BBP0 CHFR "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 134 (52.2 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 41/144 (28%), Positives = 67/144 (46%)

Query:    90 LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 145
             L+C+ICQ LL +C    PC H +C AC S + +    CP C   +E+I  +  L ++V+ 
Sbjct:   302 LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSALCPTCRCPVERICKNHILNNLVEA 361

Query:   146 FIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFLVQQAMRAFRAQNVESAKSR 205
             ++  H   +RS  +       A  NK  I +D+       L  +  RAF  +   S++  
Sbjct:   362 YLLQHPDKRRSEEDL---RSMAARNK--ITQDM-------LQPKVRRAFSDEE-GSSEDL 408

Query:   206 LSLCTEDIRDQIERMGNTSELCSQ 229
             L L   D+  +   +   S +C Q
Sbjct:   409 LEL--SDVDSESSDVSQPSIVCRQ 430

GO:0016605 "PML body" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0000278 "mitotic cell cycle" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:2444898 Chfr "checkpoint with forkhead and ring finger domains" [Mus musculus (taxid:10090)]

 Score = 133 (51.9 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 46/166 (27%), Positives = 77/166 (46%)

Query:    90 LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 145
             L+C+ICQ LL +C    PC H +C AC S + +    CP C   +E+I  +  L ++V+ 
Sbjct:   301 LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEA 360

Query:   146 FIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSME--RGAFLVQQAMRA--FRAQNVES 201
             ++  H    +S +  D    +A  NK  I +D+     R +F  ++          +V+S
Sbjct:   361 YLIQHP--DKSRSEEDVRSMDA-RNK--ITQDMLQPKVRRSFSDEEGSSEDLLELSDVDS 415

Query:   202 AKSRLS----LCTEDIRDQIERMGNTSELC----SQLGAVLGMLGD 239
               S +S    +C +    +  R    S  C    S+LGA L + G+
Sbjct:   416 ESSDISQPYIVCRQC--PEYRRQAVQSLPCPVPESELGATLALGGE 459

GO:0000166 "nucleotide binding" evidence=ISO

GO:0000209 "protein polyubiquitination" evidence=ISO;IDA

GO:0000278 "mitotic cell cycle" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007093 "mitotic cell cycle checkpoint" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IMP

GO:0016605 "PML body" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0019941 "modification-dependent protein catabolic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|Q5RF77 CHFR "E3 ubiquitin-protein ligase CHFR" [Pongo abelii (taxid:9601)]

 Score = 132 (51.5 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 28/86 (32%), Positives = 46/86 (53%)

Query:    90 LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 145
             L+C+ICQ LL +C    PC H +C AC S + +    CP C   +E+I  +  L ++V+ 
Sbjct:   210 LTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVERICKNHILNNLVEA 269

Query:   146 FIEGHARIKRSHTNSDKEEDEAGENK 171
             ++  H    +S +  D +  +A  NK
Sbjct:   270 YLIQHP--DKSRSEEDVQSMDA-RNK 292

GO:0000166 "nucleotide binding" evidence=ISS

GO:0000209 "protein polyubiquitination" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0007093 "mitotic cell cycle checkpoint" evidence=ISS

GO:0016605 "PML body" evidence=ISS

GO:0019941 "modification-dependent protein catabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	392
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	7e-08
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	3e-07
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	8e-07
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	4e-06
smart00184	40	smart00184, RING, Ring finger	5e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-05
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	3e-04

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 229 QLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYY 288
            L A L  L    R +GD D A+     ++E   +L  D  E        LN +  L   
Sbjct: 3   DLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARA----LNNLARLYLA 58

Query: 289 GGDLQAARSYYVRSLNVRRD 308
            GD   A  Y  ++L +R  
Sbjct: 59  LGDYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 46.3 bits (110), Expect = 3e-07
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 92  CMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADI 130
           C IC     E     PC HV+C++CI ++       CPLC   I
Sbjct: 2   CPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 45.2 bits (107), Expect = 8e-07
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 89  PLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGA 128
            L C IC  LL +    TPC HV+C+ CI R+      CP+C  
Sbjct: 2   ELECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 6/45 (13%)

Query: 91  SCMICQALLFECSKC--TPCSHVYCKACISRFKD----CPLCGAD 129
            C IC        +    PC HV+ K C+ ++      CPLC A 
Sbjct: 2   ECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCRAP 46

Length = 46

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 42.9 bits (101), Expect = 5e-06
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 92  CMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLC 126
           C IC     +     PC H +C++CI ++ +     CP+C
Sbjct: 1   CPICLEEYLKDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSI 337
           +LN +  +    GD   A     ++L + R+  + H        + A +L  +A +  ++
Sbjct: 7   ALNNLALVLRRLGDYDEALELLEKALELARELGEDH-------PETARALNNLARLYLAL 59

Query: 338 GNEDVAVDGFQEAIKRLES 356
           G+ D A++  ++A+   E+
Sbjct: 60  GDYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 5/40 (12%)

Query: 92  CMICQALLFECSKCTPCSHVYCKACI-----SRFKDCPLC 126
           C IC     +     PC H++C  CI     S    CPLC
Sbjct: 1   CPICLEEPKDPVTILPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	392
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.12
KOG4367	699	consensus Predicted Zn-finger protein [Function un	99.11
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.03
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.95
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.82
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.81
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.77
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.73
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.71
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.7
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.64
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.63
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.56
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.55
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.53
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.53
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.48
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.41
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.37
PHA02929	238	N1R/p28-like protein; Provisional	98.37
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.32
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.29
PF14634	44	zf-RING_5: zinc-RING finger domain	98.28
PHA02926	242	zinc finger-like protein; Provisional	98.27
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.17
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.12
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.07
KOG2660	331	consensus Locus-specific chromosome binding protei	98.06
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.05
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.03
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.01
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	97.95
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.93
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.92
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.88
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.85
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.82
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.82
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.73
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.6
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.58
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	97.56
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.46
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.45
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.45
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.41
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.41
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.38
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.36
PRK15359	144	type III secretion system chaperone protein SscB;	97.26
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.25
COG5152	259	Uncharacterized conserved protein, contains RING a	97.23
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.2
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.17
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.17
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.04
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	97.03
COG5222	427	Uncharacterized conserved protein, contains RING Z	96.99
KOG0825	1134	consensus PHD Zn-finger protein [General function	96.96
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.87
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.83
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	96.74
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.69
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.68
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.6
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.6
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	96.54
PRK11788	389	tetratricopeptide repeat protein; Provisional	96.52
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.51
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.44
KOG1125	579	consensus TPR repeat-containing protein [General f	96.41
KOG1126	638	consensus DNA-binding cell division cycle control	96.38
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	96.36
PRK15359	144	type III secretion system chaperone protein SscB;	96.35
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	96.32
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.29
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.27
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.22
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.19
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.19
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.17
PRK11189	296	lipoprotein NlpI; Provisional	96.16
KOG1002	791	consensus Nucleotide excision repair protein RAD16	96.12
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.12
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.1
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	96.07
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	96.0
PRK11788	389	tetratricopeptide repeat protein; Provisional	95.96
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	95.93
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	95.93
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	95.92
KOG0553	304	consensus TPR repeat-containing protein [General f	95.88
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	95.86
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	95.81
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	95.77
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	95.77
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.76
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.74
PRK10370	198	formate-dependent nitrite reductase complex subuni	95.71
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	95.69
KOG2003	840	consensus TPR repeat-containing protein [General f	95.68
PRK12370	553	invasion protein regulator; Provisional	95.65
PRK11189	296	lipoprotein NlpI; Provisional	95.6
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	95.54
PRK04841	903	transcriptional regulator MalT; Provisional	95.53
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	95.51
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	95.39
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	95.32
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	95.13
PRK12370	553	invasion protein regulator; Provisional	95.1
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	95.09
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	95.06
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.05
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	95.02
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.96
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	94.87
TIGR02552	135	LcrH_SycD type III secretion low calcium response	94.76
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	94.76
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	94.74
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	94.71
PRK04841	903	transcriptional regulator MalT; Provisional	94.6
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	94.56
PRK10803	263	tol-pal system protein YbgF; Provisional	94.51
KOG0547	606	consensus Translocase of outer mitochondrial membr	94.41
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	94.4
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	94.38
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.34
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	94.26
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	94.24
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	94.24
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	94.23
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	94.21
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	94.11
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	94.09
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	94.04
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	94.03
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	93.95
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	93.83
PF12688	120	TPR_5: Tetratrico peptide repeat	93.77
KOG1126	638	consensus DNA-binding cell division cycle control	93.72
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	93.6
PF04641	260	Rtf2: Rtf2 RING-finger	93.54
PRK10370	198	formate-dependent nitrite reductase complex subuni	93.5
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	93.35
KOG0547	606	consensus Translocase of outer mitochondrial membr	93.31
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	93.3
PF13371	73	TPR_9: Tetratricopeptide repeat	93.23
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	93.2
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	93.12
KOG4739	233	consensus Uncharacterized protein involved in syna	92.94
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	92.53
KOG2003	840	consensus TPR repeat-containing protein [General f	92.5
KOG1585	308	consensus Protein required for fusion of vesicles	92.49
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	92.42
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	92.39
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	92.39
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.19
PRK10803	263	tol-pal system protein YbgF; Provisional	92.16
KOG1586	288	consensus Protein required for fusion of vesicles	92.13
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	92.08
KOG4555	175	consensus TPR repeat-containing protein [Function	91.97
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	91.61
PF13428	44	TPR_14: Tetratricopeptide repeat	91.57
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	91.52
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	91.47
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	91.42
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	91.41
KOG0553	304	consensus TPR repeat-containing protein [General f	91.25
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	91.18
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	91.17
KOG3039	303	consensus Uncharacterized conserved protein [Funct	91.16
KOG2076	895	consensus RNA polymerase III transcription factor	91.06
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	90.91
KOG1125	579	consensus TPR repeat-containing protein [General f	90.7
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	90.63
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	90.58
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	90.54
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	90.46
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	90.41
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	90.31
COG5236	493	Uncharacterized conserved protein, contains RING Z	90.15
PRK15331	165	chaperone protein SicA; Provisional	89.98
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	89.91
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	89.66
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	89.6
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	89.49
KOG1001	674	consensus Helicase-like transcription factor HLTF/	89.42
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	89.41
PF12688	120	TPR_5: Tetratrico peptide repeat	89.22
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	89.22
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	89.07
KOG3002	299	consensus Zn finger protein [General function pred	88.93
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	88.76
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	88.52
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	88.22
PF04100	383	Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007	88.16
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	88.08
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	88.05
PF04212	69	MIT: MIT (microtubule interacting and transport) d	88.0
KOG1129	478	consensus TPR repeat-containing protein [General f	87.89
KOG2796	366	consensus Uncharacterized conserved protein [Funct	87.64
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	87.42
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	87.37
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	87.27
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	87.15
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	86.95
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	86.75
COG5219	1525	Uncharacterized conserved protein, contains RING Z	86.7
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	86.63
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	86.61
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	86.58
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	86.26
KOG2076	895	consensus RNA polymerase III transcription factor	86.18
KOG4555	175	consensus TPR repeat-containing protein [Function	86.17
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	86.11
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	86.02
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	85.81
KOG1129	478	consensus TPR repeat-containing protein [General f	85.74
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	85.57
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	85.55
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	85.53
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	85.47
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	85.22
PRK14720	906	transcript cleavage factor/unknown domain fusion p	84.99
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	84.46
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	83.97
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	83.86
cd02656	75	MIT MIT: domain contained within Microtubule Inter	83.83
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	83.59
PRK14574	822	hmsH outer membrane protein; Provisional	83.52
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	83.03
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	82.76
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	82.54
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	82.53
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	81.92
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	81.91
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	81.81
PRK14720	906	transcript cleavage factor/unknown domain fusion p	81.72
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	81.59
PF13371	73	TPR_9: Tetratricopeptide repeat	81.28
KOG4234	271	consensus TPR repeat-containing protein [General f	81.15
COG4783	484	Putative Zn-dependent protease, contains TPR repea	80.38
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	80.18

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.12  E-value=2.5e-09  Score=108.35  Aligned_cols=174  Identities=17%  Similarity=0.174  Sum_probs=143.5

Q ss_pred             HHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHH
Q 016258          193 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEII  272 (392)
Q Consensus       193 a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~  272 (392)
                      -+.+|+++.|...+..+.+.+....-      ..++.....+.+|+..++.++.+.+|+.+|+++......+.+..   .
T Consensus       209 y~~~g~~e~A~~l~k~Al~~l~k~~G------~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~---h  279 (508)
T KOG1840|consen  209 YAVQGRLEKAEPLCKQALRILEKTSG------LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED---H  279 (508)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHccC------ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC---C
Confidence            34678888888877655554322211      23555566677899999899999999999999988887766644   3


Q ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258          273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  352 (392)
Q Consensus       273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~  352 (392)
                      ..+...+++|+.++...|++++|..+++++++|++.......      .+++..|.+++.++...+.+++|+.+|+++++
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~------~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~  353 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASH------PEVAAQLSELAAILQSMNEYEEAKKLLQKALK  353 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCh------HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            457889999999999999999999999999999998554433      38899999999999999999999999999999


Q ss_pred             HHHHh--hcCCCchHHHHHHHHHHHHHHHHh
Q 016258          353 RLESL--TLKPEEAGLEQRRLSVLEFLNNQL  381 (392)
Q Consensus       353 i~e~l--~~~p~~a~~l~~~~~~~~~l~~~~  381 (392)
                      |+...  ..++-.+.+..+++.+|.++|+..
T Consensus       354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~  384 (508)
T KOG1840|consen  354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYK  384 (508)
T ss_pred             HHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence            99987  777788999999999999999764

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=99.11  E-value=6.6e-11  Score=113.22  Aligned_cols=204  Identities=20%  Similarity=0.232  Sum_probs=129.1

Q ss_pred             CCCeeccccccccccCceeccCCCcchHHhHHhcCC--------------------------------------------
Q 016258           87 IGPLSCMICQALLFECSKCTPCSHVYCKACISRFKD--------------------------------------------  122 (392)
Q Consensus        87 ~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~~--------------------------------------------  122 (392)
                      .++|+|+||..+++ +|.+++|+|+.|+.|-.....                                            
T Consensus         2 eeelkc~vc~~f~~-epiil~c~h~lc~~ca~~~~~~tp~~~spq~~~aa~s~vs~~~~~~~d~msl~~~ad~g~~~~~~   80 (699)
T KOG4367|consen    2 EEELKCPVCGSFYR-EPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDYDYLDLDKMSLYSEADSGYGSYGG   80 (699)
T ss_pred             cccccCceehhhcc-CceEeecccHHHHHHHHhhcccCCCCCCchhhhhcCCCCCccccccccceeeEeeccCCCCccCC
Confidence            36899999999988 999999999999999754300                                            


Q ss_pred             --------------------------------------------CCCCCCCccc-------chhhhHHHHHHHHHHhhch
Q 016258          123 --------------------------------------------CPLCGADIEK-------IEADTTLQDVVDRFIEGHA  151 (392)
Q Consensus       123 --------------------------------------------CP~C~~~~~~-------~~~n~~l~~~v~~~~~~~~  151 (392)
                                                                  ||.|..++-.       ++.|..++++|++|.+...
T Consensus        81 ~a~~~~t~~~~~~~g~~~~p~am~pp~t~l~~~lap~~~~~~i~c~~c~rs~~~dd~~l~~~p~n~~le~vi~ryq~s~~  160 (699)
T KOG4367|consen   81 FASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKA  160 (699)
T ss_pred             eeecCCCccccCCCCceeCCCCCCCchhhccccccCCCCCceEEcchhhhheEecccccccCchhhHHHHHHHHHhhhhH
Confidence                                                        9999886542       8999999999999976443


Q ss_pred             h-cccCCCC-CCcchhhccCCCceeecCCCcccchhhhhHHHHHHHhhcHHHHHHHh-hhcHHHHHHHHHhcCCcHHHHH
Q 016258          152 R-IKRSHTN-SDKEEDEAGENKKVIYEDVSMERGAFLVQQAMRAFRAQNVESAKSRL-SLCTEDIRDQIERMGNTSELCS  228 (392)
Q Consensus       152 ~-~~~~~~~-~~~~~~~~~~~~~~~~Cd~C~~~~~cl~c~a~~a~~~g~~~~A~~~~-~~c~~h~~~~l~~~~~~~~~C~  228 (392)
                      - .+++.-. .+++.-...+.++++||+-|.-+     ||-.    +|-+  |+.++ ...+.....  ...+.....|.
T Consensus       161 aa~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~-----~hp~----rgpl--akh~l~~~~~grvs~--~~s~r~~~~ct  227 (699)
T KOG4367|consen  161 AALKCQLCEKAPKEATVMCEQCDVFYCDPCRLR-----CHPP----RGPL--AKHRLVPPAQGRVSR--RLSPRKVSTCT  227 (699)
T ss_pred             HhhhhhhhcCChhhhhhhHhhCceEEechHHhc-----cCCC----CCch--hhcccCCcccCceee--ccchhhhhhcc
Confidence            2 1222111 01111123446777888877422     2210    0000  01111 000000000  00011123788


Q ss_pred             HH-HHHHhhhhh--------hhhhhcch--hHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHH
Q 016258          229 QL-GAVLGMLGD--------CCRAMGDA--DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARS  297 (392)
Q Consensus       229 ~h-~~~L~~~c~--------~C~~~gdh--h~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~  297 (392)
                      +| ++.+.+||.        -|...|.|  |++..+-..+.-++.+|......+....+++...|+.|......+++.-.
T Consensus       228 ~h~~e~~smyc~~ck~pvc~~clee~khs~hevkal~~~~k~hksqls~al~~lsdrak~a~e~l~~lr~m~~~iq~n~~  307 (699)
T KOG4367|consen  228 DHELENHSMYCVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSV  307 (699)
T ss_pred             CCCCCCceEEEEecCChHHHHHHHhhcccchhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            88 778888883        45566788  99888888888888888777767777777778888888776666776666


Q ss_pred             HHHHHHH
Q 016258          298 YYVRSLN  304 (392)
Q Consensus       298 ~ye~sL~  304 (392)
                      .|+..|-
T Consensus       308 ef~a~l~  314 (699)
T KOG4367|consen  308 EFEACLV  314 (699)
T ss_pred             hHHHHHH
Confidence            7776654

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.03  E-value=8.3e-11  Score=78.38  Aligned_cols=34  Identities=38%  Similarity=1.083  Sum_probs=28.1

Q ss_pred             ccccccccccCceeccCCCcchHHhHHhcC--------CCCCC
Q 016258           92 CMICQALLFECSKCTPCSHVYCKACISRFK--------DCPLC  126 (392)
Q Consensus        92 C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~--------~CP~C  126 (392)
                      |+||+++|. +|++++|||+||..||.++|        .||.|
T Consensus         1 CpiC~~~~~-~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFK-DPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-S-SEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhC-CccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999999 99999999999999999984        38876

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.95  E-value=4.1e-08  Score=99.68  Aligned_cols=172  Identities=14%  Similarity=0.170  Sum_probs=137.8

Q ss_pred             HHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHH
Q 016258          194 FRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIH  273 (392)
Q Consensus       194 ~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~  273 (392)
                      +.+|++++|...+...-+...+.+..      ..++.+..|..+..+|..++++..++.++.....+.....+   +...
T Consensus       294 ~~~GKf~EA~~~~e~Al~I~~~~~~~------~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g---~~~~  364 (508)
T KOG1840|consen  294 YKQGKFAEAEEYCERALEIYEKLLGA------SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG---EDNV  364 (508)
T ss_pred             hccCChHHHHHHHHHHHHHHHHhhcc------ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc---ccch
Confidence            36788888888776555444442211      34555667777888877889999999999988655553333   2233


Q ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       274 ~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                      .+....++||.++..+|++++|..+|++++.+.++..++...      .++..|++||..+...+.+..|...|.++..|
T Consensus       365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~------~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY------GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh------hhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            677899999999999999999999999999999887766544      67889999999999999999999999999999


Q ss_pred             HHHh-hcCCCchHHHHHHHHHHHHHHHH
Q 016258          354 LESL-TLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       354 ~e~l-~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      +..+ ..+|+......||+.+|..+|+.
T Consensus       439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~  466 (508)
T KOG1840|consen  439 MKLCGPDHPDVTYTYLNLAALYRAQGNY  466 (508)
T ss_pred             HHHhCCCCCchHHHHHHHHHHHHHcccH
Confidence            9555 88899999999999999999975

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.82  E-value=3.9e-09  Score=103.41  Aligned_cols=62  Identities=31%  Similarity=0.740  Sum_probs=55.2

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc--chhhhHHHHHHHHHHhhc
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFIEGH  150 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~v~~~~~~~  150 (392)
                      ..+.|+||++++. .|++++|||.||..||..|+    .||.|+..+..  +..|..|.++|+.|+...
T Consensus        25 ~~l~C~IC~d~~~-~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R   92 (397)
T TIGR00599        25 TSLRCHICKDFFD-VPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFKNLR   92 (397)
T ss_pred             cccCCCcCchhhh-CccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence            5699999999988 99999999999999999874    49999998876  889999999999987543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00504 Ubox Modified RING finger domain

Probab=98.81  E-value=4.5e-09  Score=76.65  Aligned_cols=56  Identities=14%  Similarity=0.344  Sum_probs=49.1

Q ss_pred             CeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc--chhhhHHHHHHHH
Q 016258           89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDR  145 (392)
Q Consensus        89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~v~~  145 (392)
                      ++.|+||.+++. +|++++|||+||+.||..|+    .||.|+..+..  +.+|..+++.++.
T Consensus         1 ~~~Cpi~~~~~~-~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~   62 (63)
T smart00504        1 EFLCPISLEVMK-DPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQE   62 (63)
T ss_pred             CcCCcCCCCcCC-CCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHh
Confidence            478999999988 89999999999999999984    59999998865  8888888887763

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.77  E-value=5.4e-08  Score=73.83  Aligned_cols=77  Identities=18%  Similarity=0.314  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258          273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  352 (392)
Q Consensus       273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~  352 (392)
                      ..+...+++||.++..+|++++|+.+|++++++ .+....      ...+++.++.++|.++..+|++++|+++|+++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGD------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTT------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCC------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            356778999999999999999999999999999 444432      2247899999999999999999999999999999


Q ss_pred             HHHH
Q 016258          353 RLES  356 (392)
Q Consensus       353 i~e~  356 (392)
                      |.+.
T Consensus        75 i~~k   78 (78)
T PF13424_consen   75 IFEK   78 (78)
T ss_dssp             HHHH
T ss_pred             hhcC
Confidence            9874

...

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=5.7e-09  Score=95.95  Aligned_cols=47  Identities=28%  Similarity=0.773  Sum_probs=41.0

Q ss_pred             CcCCCeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc
Q 016258           85 FKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK  132 (392)
Q Consensus        85 ~~~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~  132 (392)
                      +.....+|.+|++.-. +|..+||||.||++||..|-    .||+||..+.+
T Consensus       235 i~~a~~kC~LCLe~~~-~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p  285 (293)
T KOG0317|consen  235 IPEATRKCSLCLENRS-NPSATPCGHIFCWSCILEWCSEKAECPLCREKFQP  285 (293)
T ss_pred             CCCCCCceEEEecCCC-CCCcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence            3445699999999977 99999999999999999993    59999998765

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.71  E-value=6.8e-09  Score=96.81  Aligned_cols=60  Identities=30%  Similarity=0.738  Sum_probs=54.1

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc--chhhhHHHHHHHHHHh
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFIE  148 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~v~~~~~  148 (392)
                      .-|.|-||.++|. -|+++||+|+||..||..+.    .||.|..+++.  +..|+.|.+||..|..
T Consensus        22 ~lLRC~IC~eyf~-ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~   87 (442)
T KOG0287|consen   22 DLLRCGICFEYFN-IPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSLNF   87 (442)
T ss_pred             HHHHHhHHHHHhc-CceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence            4589999999998 99999999999999999984    59999999887  8899999999988763

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.70  E-value=9.1e-09  Score=90.39  Aligned_cols=44  Identities=32%  Similarity=0.915  Sum_probs=39.4

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC--------------------CCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK--------------------DCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~--------------------~CP~C~~~~~~  132 (392)
                      +++.|+||++.+. +|++++|||.||+.||..|.                    .||.|+..+..
T Consensus        17 ~~~~CpICld~~~-dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~   80 (193)
T PLN03208         17 GDFDCNICLDQVR-DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE   80 (193)
T ss_pred             CccCCccCCCcCC-CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence            4699999999988 99999999999999999872                    49999998865

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=1.7e-08  Score=90.33  Aligned_cols=44  Identities=32%  Similarity=0.850  Sum_probs=39.6

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC-------CCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-------~CP~C~~~~~~  132 (392)
                      ..|.|.||++... +|+++.|||.|||.||-+|.       .||+|+..+..
T Consensus        46 ~~FdCNICLd~ak-dPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~   96 (230)
T KOG0823|consen   46 GFFDCNICLDLAK-DPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI   96 (230)
T ss_pred             CceeeeeeccccC-CCEEeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence            5699999999988 99999999999999999993       49999987665

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.63  E-value=2.9e-08  Score=74.73  Aligned_cols=61  Identities=16%  Similarity=0.365  Sum_probs=50.3

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc--chhhhHHHHHHHHHHhh
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRFIEG  149 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~~v~~~~~~  149 (392)
                      +.|.|+|+..++. +|+++++||+|++.+|..|.     .||.|+..+..  +.+|..|++.|+.|...
T Consensus         3 ~~f~CpIt~~lM~-dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~   70 (73)
T PF04564_consen    3 DEFLCPITGELMR-DPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAE   70 (73)
T ss_dssp             GGGB-TTTSSB-S-SEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHH
T ss_pred             cccCCcCcCcHhh-CceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHH
Confidence            5699999999999 99999999999999999993     49999998887  99999999999999864

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=8.1e-08  Score=82.29  Aligned_cols=47  Identities=36%  Similarity=0.804  Sum_probs=38.4

Q ss_pred             cCCCeeccccccccccC-ceeccCCCcchHHhHHhc----CCCCCCCCCccc
Q 016258           86 KIGPLSCMICQALLFEC-SKCTPCSHVYCKACISRF----KDCPLCGADIEK  132 (392)
Q Consensus        86 ~~~~~~C~iC~~~~~~~-p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~  132 (392)
                      +...+.||||+.-+... |+.+.|||.||+.||...    ..||+|++.++.
T Consensus       128 ~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~  179 (187)
T KOG0320|consen  128 KEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH  179 (187)
T ss_pred             cccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence            33569999999987743 577999999999999887    469999986553

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.55  E-value=3.4e-08  Score=70.43  Aligned_cols=54  Identities=28%  Similarity=0.713  Sum_probs=29.7

Q ss_pred             CeeccccccccccCce-eccCCCcchHHhHHhc--CCCCCCCCCccc--chhhhHHHHHH
Q 016258           89 PLSCMICQALLFECSK-CTPCSHVYCKACISRF--KDCPLCGADIEK--IEADTTLQDVV  143 (392)
Q Consensus        89 ~~~C~iC~~~~~~~p~-~~~C~h~fC~~Ci~~~--~~CP~C~~~~~~--~~~n~~l~~~v  143 (392)
                      -+.|++|.+++. .|+ +..|.|.||+.||.+.  ..||+|+.+...  +..|+.|.+++
T Consensus         7 lLrCs~C~~~l~-~pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Paw~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    7 LLRCSICFDILK-EPVCLGGCEHIFCSSCIRDCIGSECPVCHTPAWIQDIQINRQLDSMI   65 (65)
T ss_dssp             TTS-SSS-S--S-S-B---SSS--B-TTTGGGGTTTB-SSS--B-S-SS----HHHHHHH
T ss_pred             hcCCcHHHHHhc-CCceeccCccHHHHHHhHHhcCCCCCCcCChHHHHHHHhhhhhhccC
Confidence            478999999999 776 5789999999999988  469999988744  88898887765

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.53  E-value=3.8e-08  Score=64.54  Aligned_cols=34  Identities=44%  Similarity=1.163  Sum_probs=28.5

Q ss_pred             ccccccccccCc-eeccCCCcchHHhHHhc----CCCCCC
Q 016258           92 CMICQALLFECS-KCTPCSHVYCKACISRF----KDCPLC  126 (392)
Q Consensus        92 C~iC~~~~~~~p-~~~~C~h~fC~~Ci~~~----~~CP~C  126 (392)
                      |+||++.+. +| +.++|||+||+.||.+|    ..||.|
T Consensus         1 C~iC~~~~~-~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELR-DPVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-S-SEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCccc-CcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            899999999 67 78999999999999988    358877

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=1.3e-07  Score=90.42  Aligned_cols=61  Identities=28%  Similarity=0.704  Sum_probs=53.1

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCcccchhhhHHHHHHHHHHhh
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEKIEADTTLQDVVDRFIEG  149 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~~~~n~~l~~~v~~~~~~  149 (392)
                      +++.|+||+++|. .|++++|+|+||..|+..++    .||.|+.....+.+|..+.++++.+...
T Consensus        12 ~~~~C~iC~~~~~-~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~~~~~~~~n~~l~~~~~~~~~~   76 (386)
T KOG2177|consen   12 EELTCPICLEYFR-EPVLLPCGHNFCRACLTRSWEGPLSCPVCRPPSRNLRPNVLLANLVERLRQL   76 (386)
T ss_pred             ccccChhhHHHhh-cCccccccchHhHHHHHHhcCCCcCCcccCCchhccCccHHHHHHHHHHHhc
Confidence            6799999999999 88999999999999999876    5999996333477999999999998864

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.48  E-value=5.9e-07  Score=90.63  Aligned_cols=102  Identities=20%  Similarity=0.409  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 016258          225 ELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN  304 (392)
Q Consensus       225 ~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~  304 (392)
                      .+|+.|...+.+++.+.+.+|....|+.+|+.+.+...           .++...++|+.++..+|.+++|+..|.++|.
T Consensus       348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p-----------~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr  416 (966)
T KOG4626|consen  348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP-----------EFAAAHNNLASIYKQQGNLDDAIMCYKEALR  416 (966)
T ss_pred             HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh-----------hhhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence            48999999999999999999999999999988865533           3455778888888888888888888888887


Q ss_pred             HHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          305 VRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       305 i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                      |.-              ..|++++|+|.+|..+|+...|+..|..|+
T Consensus       417 I~P--------------~fAda~~NmGnt~ke~g~v~~A~q~y~rAI  449 (966)
T KOG4626|consen  417 IKP--------------TFADALSNMGNTYKEMGDVSAAIQCYTRAI  449 (966)
T ss_pred             cCc--------------hHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence            632              123444444444444444444444444444

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.41  E-value=9.7e-08  Score=66.28  Aligned_cols=43  Identities=35%  Similarity=0.830  Sum_probs=36.9

Q ss_pred             CeeccccccccccCceeccCCCc-chHHhHHhc----CCCCCCCCCccc
Q 016258           89 PLSCMICQALLFECSKCTPCSHV-YCKACISRF----KDCPLCGADIEK  132 (392)
Q Consensus        89 ~~~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~----~~CP~C~~~~~~  132 (392)
                      +..|.||++... +++.++|||. ||..|+.+|    ..||.||+++..
T Consensus         2 ~~~C~iC~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~   49 (50)
T PF13920_consen    2 DEECPICFENPR-DVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES   49 (50)
T ss_dssp             HSB-TTTSSSBS-SEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred             cCCCccCCccCC-ceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence            468999999988 8999999999 999999999    679999998753

...

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.37  E-value=1.9e-07  Score=85.59  Aligned_cols=58  Identities=26%  Similarity=0.630  Sum_probs=50.1

Q ss_pred             CeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc--chhhhHHHHHHHHHH
Q 016258           89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFI  147 (392)
Q Consensus        89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~v~~~~  147 (392)
                      .+.|-||..+|. -|..++|||+||..||.++.    .||+|+.....  ++.+..+..+++.|.
T Consensus        25 ~lrC~IC~~~i~-ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~   88 (391)
T COG5432          25 MLRCRICDCRIS-IPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHA   88 (391)
T ss_pred             HHHhhhhhheee-cceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhh
Confidence            489999999999 99999999999999999984    49999998765  677777777777665

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.37  E-value=1.4e-07  Score=86.52  Aligned_cols=51  Identities=25%  Similarity=0.706  Sum_probs=40.9

Q ss_pred             CCeeccccccccccCc-------eeccCCCcchHHhHHhcC----CCCCCCCCcccchhhhH
Q 016258           88 GPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIEKIEADTT  138 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~~~~n~~  138 (392)
                      .+..|+||++.+.+++       ++++|+|.||..||.+|.    .||+||..+..+.++++
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~  234 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKSRF  234 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEeeeee
Confidence            4689999999877443       567899999999999993    59999998877555443

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.32  E-value=1.8e-07  Score=63.07  Aligned_cols=37  Identities=35%  Similarity=0.912  Sum_probs=31.6

Q ss_pred             eccccccccc--cCceeccCCCcchHHhHHhc----CCCCCCC
Q 016258           91 SCMICQALLF--ECSKCTPCSHVYCKACISRF----KDCPLCG  127 (392)
Q Consensus        91 ~C~iC~~~~~--~~p~~~~C~h~fC~~Ci~~~----~~CP~C~  127 (392)
                      .|+||++.+.  +.++.++|+|.||..||..|    ..||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            5999999984  36889999999999999999    4699996

...

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.29  E-value=3.4e-07  Score=60.61  Aligned_cols=34  Identities=35%  Similarity=1.061  Sum_probs=30.1

Q ss_pred             ccccccccccCce-eccCCCcchHHhHHhcC------CCCCC
Q 016258           92 CMICQALLFECSK-CTPCSHVYCKACISRFK------DCPLC  126 (392)
Q Consensus        92 C~iC~~~~~~~p~-~~~C~h~fC~~Ci~~~~------~CP~C  126 (392)
                      |+||++.+. .+. +++|||.||..||..|+      .||.|
T Consensus         1 C~iC~~~~~-~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFE-DPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCS-SEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCcccc-CCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999988 777 99999999999999883      48887

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.28  E-value=5.9e-07  Score=60.51  Aligned_cols=38  Identities=32%  Similarity=0.981  Sum_probs=33.1

Q ss_pred             ecccccccc--ccCceeccCCCcchHHhHHhcC----CCCCCCC
Q 016258           91 SCMICQALL--FECSKCTPCSHVYCKACISRFK----DCPLCGA  128 (392)
Q Consensus        91 ~C~iC~~~~--~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~  128 (392)
                      .|+||...+  ...+++++|||+||..|+..+.    .||.|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            489999998  3369999999999999999987    6999974

>PHA02926 zinc finger-like protein; Provisional

Probab=98.27  E-value=3.2e-07  Score=81.60  Aligned_cols=52  Identities=23%  Similarity=0.738  Sum_probs=41.2

Q ss_pred             CCeeccccccccccC--------ceeccCCCcchHHhHHhcC----------CCCCCCCCcccchhhhHH
Q 016258           88 GPLSCMICQALLFEC--------SKCTPCSHVYCKACISRFK----------DCPLCGADIEKIEADTTL  139 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~--------p~~~~C~h~fC~~Ci~~~~----------~CP~C~~~~~~~~~n~~l  139 (392)
                      .+..|+||++...+.        ++..+|+|+||..||..|.          .||.||..+..+.+.++.
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf~  238 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKFY  238 (242)
T ss_pred             CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccce
Confidence            468999999986522        4677999999999999994          299999988876655443

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=7.6e-07  Score=81.09  Aligned_cols=45  Identities=31%  Similarity=0.941  Sum_probs=39.0

Q ss_pred             CCCeeccccccccccCceeccCCCcchHHhHHh-c----CC-CCCCCCCccc
Q 016258           87 IGPLSCMICQALLFECSKCTPCSHVYCKACISR-F----KD-CPLCGADIEK  132 (392)
Q Consensus        87 ~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~-~----~~-CP~C~~~~~~  132 (392)
                      ..++.|.||++... .|..++|||.||+.||.. |    .. ||+||+....
T Consensus       213 ~~d~kC~lC~e~~~-~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p  263 (271)
T COG5574         213 LADYKCFLCLEEPE-VPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP  263 (271)
T ss_pred             ccccceeeeecccC-CcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence            35799999999988 999999999999999998 5    23 9999986544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.12  E-value=4e-05  Score=57.88  Aligned_cols=77  Identities=22%  Similarity=0.380  Sum_probs=65.4

Q ss_pred             HHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 016258          228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR  307 (392)
Q Consensus       228 ~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~  307 (392)
                      |.....+..++.+++.+|++.+|+.+++++..+.+.++.    -...+...+.+||.++...|++++|+.+|++++++.+
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD----DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT----HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            455677888999998999999999999999988777765    2345678999999999999999999999999999876


Q ss_pred             H
Q 016258          308 D  308 (392)
Q Consensus       308 ~  308 (392)
                      .
T Consensus        78 k   78 (78)
T PF13424_consen   78 K   78 (78)
T ss_dssp             H
T ss_pred             C
Confidence            3

...

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.07  E-value=1.5e-06  Score=57.87  Aligned_cols=27  Identities=37%  Similarity=1.111  Sum_probs=18.5

Q ss_pred             ccccccccccC----ceeccCCCcchHHhHHhc
Q 016258           92 CMICQALLFEC----SKCTPCSHVYCKACISRF  120 (392)
Q Consensus        92 C~iC~~~~~~~----p~~~~C~h~fC~~Ci~~~  120 (392)
                      |+||.+ +. +    |++++|||+||+.||.++
T Consensus         1 CpIc~e-~~-~~~n~P~~L~CGH~~c~~cl~~l   31 (43)
T PF13445_consen    1 CPICKE-FS-TEENPPMVLPCGHVFCKDCLQKL   31 (43)
T ss_dssp             -TTT------TTSS-EEE-SSS-EEEHHHHHHH
T ss_pred             CCcccc-cc-CCCCCCEEEeCccHHHHHHHHHH
Confidence            899999 55 5    999999999999999876

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=98.06  E-value=1.4e-06  Score=81.81  Aligned_cols=63  Identities=38%  Similarity=0.887  Sum_probs=53.2

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhc----CCCCCCCCCccc------chhhhHHHHHHHHHHhhc
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTLQDVVDRFIEGH  150 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~------~~~n~~l~~~v~~~~~~~  150 (392)
                      ....|.+|..+|.|.-.++.|.|+||++||..+    .-||.|...+..      +..+..|+.||-++..+.
T Consensus        14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPgl   86 (331)
T KOG2660|consen   14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPGL   86 (331)
T ss_pred             cceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHHcchH
Confidence            458999999999977777889999999999988    459999987665      788999999998876443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.05  E-value=6.2e-05  Score=73.11  Aligned_cols=137  Identities=17%  Similarity=0.175  Sum_probs=105.3

Q ss_pred             HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258          231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV  310 (392)
Q Consensus       231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~  310 (392)
                      |..+..+|..+|.+|++..++.+.+..+++.+++++.-.     ...+..+||+.+.-+|+++.|+++|...+.+..++.
T Consensus       195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAa-----eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg  269 (639)
T KOG1130|consen  195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAA-----ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG  269 (639)
T ss_pred             cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHH-----HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc
Confidence            445667777888899999999998888888888877433     345788999999889999999999999998887776


Q ss_pred             hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      .+..+        |-+---||..|..+.++++|++|+++-+.|-++|.........-|.++..+..||+.
T Consensus       270 ~r~vE--------AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h  331 (639)
T KOG1130|consen  270 NRTVE--------AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEH  331 (639)
T ss_pred             chhHH--------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhH
Confidence            55443        334445777888888888888888888888888865556666667777777777653

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.03  E-value=3.7e-06  Score=56.09  Aligned_cols=39  Identities=38%  Similarity=1.025  Sum_probs=31.1

Q ss_pred             eccccccccccCceeccCCCcchHHhHHhc-----CCCCCCCCC
Q 016258           91 SCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGAD  129 (392)
Q Consensus        91 ~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~  129 (392)
                      .|+||.+.+.+...+.+|+|.||..|+..|     ..||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence            489999998634445559999999999877     359999875

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=1.7e-06  Score=85.64  Aligned_cols=43  Identities=30%  Similarity=0.814  Sum_probs=38.3

Q ss_pred             CeeccccccccccCceeccCCCcchHHhHHhcC---------CCCCCCCCccc
Q 016258           89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK---------DCPLCGADIEK  132 (392)
Q Consensus        89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~---------~CP~C~~~~~~  132 (392)
                      +..||||+.... -|+.+.|||.||..||.++|         .||+|+..+..
T Consensus       186 ~~~CPICL~~~~-~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPPS-VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCCC-cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence            688999999977 88888899999999999875         39999988776

>smart00184 RING Ring finger

Probab=97.95  E-value=4.3e-06  Score=53.79  Aligned_cols=34  Identities=38%  Similarity=1.115  Sum_probs=29.8

Q ss_pred             ccccccccccCceeccCCCcchHHhHHhcC-----CCCCC
Q 016258           92 CMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLC  126 (392)
Q Consensus        92 C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C  126 (392)
                      |+||++... .++.++|+|.||..|+..|.     .||.|
T Consensus         1 C~iC~~~~~-~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELK-DPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCC-CcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            789999966 99999999999999999873     38876

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.93  E-value=5.4e-05  Score=76.86  Aligned_cols=86  Identities=21%  Similarity=0.315  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258          276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  355 (392)
Q Consensus       276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e  355 (392)
                      ..+.++||+++..+|.+++|...|++++++.-              +.|...+|||.+|.++|++++|+..|++++.|  
T Consensus       354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p--------------~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--  417 (966)
T KOG4626|consen  354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFP--------------EFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--  417 (966)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHhhCh--------------hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--
Confidence            45778888888888888888888888876532              46778899999999999999999999999876  


Q ss_pred             HhhcCCCchHHHHHHHHHHHHHHHHh
Q 016258          356 SLTLKPEEAGLEQRRLSVLEFLNNQL  381 (392)
Q Consensus       356 ~l~~~p~~a~~l~~~~~~~~~l~~~~  381 (392)
                          .|.-++.+.|++.+|--+|++-
T Consensus       418 ----~P~fAda~~NmGnt~ke~g~v~  439 (966)
T KOG4626|consen  418 ----KPTFADALSNMGNTYKEMGDVS  439 (966)
T ss_pred             ----CchHHHHHHhcchHHHHhhhHH
Confidence                4555666677777776666553

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=1.4e-06  Score=82.26  Aligned_cols=60  Identities=23%  Similarity=0.629  Sum_probs=47.4

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhc-----CCCCCCCCCccc---chhhhHHHHHHHHHH
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEK---IEADTTLQDVVDRFI  147 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~---~~~n~~l~~~v~~~~  147 (392)
                      .++.|+||+++|.....+..|+|.||..||...     ..||.||+.+..   +.++..+-.|+..+.
T Consensus        42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~  109 (381)
T KOG0311|consen   42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY  109 (381)
T ss_pred             hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence            479999999999977777789999999999765     469999998776   666555555555544

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.88  E-value=8.3e-05  Score=72.23  Aligned_cols=118  Identities=16%  Similarity=0.226  Sum_probs=90.9

Q ss_pred             hHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHH
Q 016258          248 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSL  327 (392)
Q Consensus       248 h~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl  327 (392)
                      ..|+.+|++-+++.+.+++..     .......+||+.++-+|+++.|+..++.-|.|.++..++..+        ....
T Consensus       172 ~~Av~fy~eNL~l~~~lgDr~-----aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAae--------RRA~  238 (639)
T KOG1130|consen  172 ENAVKFYMENLELSEKLGDRL-----AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAE--------RRAH  238 (639)
T ss_pred             HHHHHHHHHHHHHHHHhhhHH-----hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHH--------HHhh
Confidence            345666666677777776632     234578899999999999999999999999999887655433        4567


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258          328 AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~  378 (392)
                      ++||..+.-+|+++.|+++|+.++.+-.++.+....+-.-+.++..|..+.
T Consensus       239 sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~  289 (639)
T KOG1130|consen  239 SNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLK  289 (639)
T ss_pred             cccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHH
Confidence            899999999999999999999999999998554455555556666655443

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.85  E-value=1.7e-05  Score=75.05  Aligned_cols=58  Identities=24%  Similarity=0.575  Sum_probs=40.4

Q ss_pred             CCeecccccc--ccccCc--eeccCCCcchHHhHHhcC-----CCCCCCCCccc------chhhhHHHHHHHH
Q 016258           88 GPLSCMICQA--LLFECS--KCTPCSHVYCKACISRFK-----DCPLCGADIEK------IEADTTLQDVVDR  145 (392)
Q Consensus        88 ~~~~C~iC~~--~~~~~p--~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~------~~~n~~l~~~v~~  145 (392)
                      ++..||+|..  ++...-  .+.+|||.||.+|+..+|     .||.|+..+..      +..+..+...|+.
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~i   74 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVDI   74 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHHH
Confidence            4578999999  444121  233799999999999964     49999998776      4445555555443

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.82  E-value=0.00066  Score=64.70  Aligned_cols=107  Identities=20%  Similarity=0.335  Sum_probs=81.5

Q ss_pred             HhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHHhhc
Q 016258          234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYG-GDLQAARSYYVRSLNVRRDAVKR  312 (392)
Q Consensus       234 L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~-g~l~~A~~~ye~sL~i~~~~~~~  312 (392)
                      +..-..++ ..++...|+.+++.+.+.....+.     ....+..+.+|+.++... |++++|+.+|++++++.+...  
T Consensus        78 ~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~-----~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--  149 (282)
T PF14938_consen   78 YEEAANCY-KKGDPDEAIECYEKAIEIYREAGR-----FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--  149 (282)
T ss_dssp             HHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT------HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--
Confidence            33333444 666778999999999888887765     455678899999999999 999999999999999887632  


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258          313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  354 (392)
Q Consensus       313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~  354 (392)
                            ........+.+++.++..+|+|++|++.|++.....
T Consensus       150 ------~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  150 ------SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC  185 (282)
T ss_dssp             -------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred             ------ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence                  112456678899999999999999999998876643

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.82  E-value=0.00092  Score=58.38  Aligned_cols=116  Identities=19%  Similarity=0.251  Sum_probs=86.6

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhh
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK  311 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~  311 (392)
                      ..+...+..+...|++..|+..++.+....    +..    .....++.+||.++...|++++|+..|++++.+.     
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~----~~~----~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-----  102 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLE----IDP----YDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-----  102 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----ccc----hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence            344556777767899999998888775442    111    1234578999999999999999999999999762     


Q ss_pred             cCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCC
Q 016258          312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPE  362 (392)
Q Consensus       312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~  362 (392)
                        +........++..+.+++..+..+|+++.|+..|++++.+++.. ..+|+
T Consensus       103 --~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~  152 (168)
T CHL00033        103 --PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG  152 (168)
T ss_pred             --cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence              22233344566666667777779999999999999999999998 55554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.73  E-value=0.0015  Score=62.33  Aligned_cols=127  Identities=17%  Similarity=0.210  Sum_probs=94.1

Q ss_pred             hhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 016258          239 DCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS  318 (392)
Q Consensus       239 ~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~  318 (392)
                      ......+++..|...|..+.+...++..     .......+.+.+.++... ++++|+..|++++++.....        
T Consensus        43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~-----~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G--------  108 (282)
T PF14938_consen   43 NCFKLAKDWEKAAEAYEKAADCYEKLGD-----KFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG--------  108 (282)
T ss_dssp             HHHHHTT-CHHHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--------
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC--------
Confidence            4455667789999999998888777655     334456677788887666 99999999999999887532        


Q ss_pred             chhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          319 QVLDVAVSLAKVADVDRSI-GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       319 ~~~dla~sl~~la~~~~~~-g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      .....|..+.++|.+++.. |+++.|+++|++|+++++.-...-.......+++.++-.+++
T Consensus       109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~  170 (282)
T PF14938_consen  109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR  170 (282)
T ss_dssp             -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence            2234678899999999999 999999999999999999874333445567778887777664

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=4.6e-05  Score=75.11  Aligned_cols=64  Identities=28%  Similarity=0.834  Sum_probs=52.1

Q ss_pred             CCCeeccccccccccCceeccCCCcchHHhHHhc----CCCCCCCCCccc-------chhhhHHHHHHHHHHhhch
Q 016258           87 IGPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK-------IEADTTLQDVVDRFIEGHA  151 (392)
Q Consensus        87 ~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~-------~~~n~~l~~~v~~~~~~~~  151 (392)
                      -.+|.|.||...|. +|+++||||+||..||.+.    ..||.|+..+..       ..+|+.+..++..|....-
T Consensus        82 ~sef~c~vc~~~l~-~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~~  156 (398)
T KOG4159|consen   82 RSEFECCVCSRALY-PPVVTPCGHSFCLECLDRSLDQETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGSS  156 (398)
T ss_pred             cchhhhhhhHhhcC-CCccccccccccHHHHHHHhccCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            45799999999999 9999999999999998775    359999998875       3346777788888776543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.58  E-value=0.0024  Score=56.05  Aligned_cols=116  Identities=22%  Similarity=0.286  Sum_probs=83.5

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  312 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~  312 (392)
                      .+..+|..+...|++.+|+.+++++......    ..    .....+.++|.++...|++++|+..|++++.+.      
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------  102 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEED----PN----DRSYILYNMGIIYASNGEHDKALEYYHQALELN------  102 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc----cc----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence            4556677777889999999999887544221    11    123478899999999999999999999998752      


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCc
Q 016258          313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEE  363 (392)
Q Consensus       313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~  363 (392)
                       +........++..+..++.....+|+++.|+..|++++.++++. ..+|++
T Consensus       103 -p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        103 -PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             -cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence             22222233444455555555566678899999999999999998 666665

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=97.56  E-value=0.00017  Score=47.16  Aligned_cols=40  Identities=28%  Similarity=0.381  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCC
Q 016258          323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPE  362 (392)
Q Consensus       323 la~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l--~~~p~  362 (392)
                      ++.++++||.++..+|++++|+.++++++.+.+++  .+||+
T Consensus         1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            36789999999999999999999999999999999  66664

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=3.7e-05  Score=79.88  Aligned_cols=44  Identities=30%  Similarity=0.775  Sum_probs=38.8

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhc-----CCCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~  132 (392)
                      +-++|++|..-.. +.+++.|+|.||..|+...     ..||.|+..|..
T Consensus       642 ~~LkCs~Cn~R~K-d~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga  690 (698)
T KOG0978|consen  642 ELLKCSVCNTRWK-DAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA  690 (698)
T ss_pred             hceeCCCccCchh-hHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence            3699999998877 9999999999999999876     469999988765

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.00061  Score=68.71  Aligned_cols=109  Identities=22%  Similarity=0.279  Sum_probs=85.8

Q ss_pred             HHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 016258          227 CSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR  306 (392)
Q Consensus       227 C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~  306 (392)
                      ||.-.-++.-+|.+-+..+++.+|..+++..++....+..+...|..    .+++||.++..++.+.+|+.+|+++|.+.
T Consensus       410 ~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p----~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~  485 (611)
T KOG1173|consen  410 APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP----TLNNLGHAYRKLNKYEEAIDYYQKALLLS  485 (611)
T ss_pred             CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH----HHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence            33333355566777778888899999999888666666665555544    78999999999999999999999999653


Q ss_pred             HHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          307 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       307 ~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                      ..              -+....-+|-+|..+|+++.|+++|.+||.+
T Consensus       486 ~k--------------~~~~~asig~iy~llgnld~Aid~fhKaL~l  518 (611)
T KOG1173|consen  486 PK--------------DASTHASIGYIYHLLGNLDKAIDHFHKALAL  518 (611)
T ss_pred             CC--------------chhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence            32              1456777899999999999999999999864

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.45  E-value=0.0018  Score=68.54  Aligned_cols=60  Identities=15%  Similarity=0.138  Sum_probs=39.7

Q ss_pred             hhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 016258          236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR  306 (392)
Q Consensus       236 ~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~  306 (392)
                      .++.+++.+|++..|+.+++.+...    .+..       ......+|.++...|++++|+..|++++++.
T Consensus       438 ~la~~~~~~g~~~eA~~~~~~al~~----~P~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~  497 (615)
T TIGR00990       438 QLGVTQYKEGSIASSMATFRRCKKN----FPEA-------PDVYNYYGELLLDQNKFDEAIEKFDTAIELE  497 (615)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh----CCCC-------hHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            3444555556666666666554321    2222       2356778999999999999999999988763

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.41  E-value=0.0029  Score=67.03  Aligned_cols=114  Identities=17%  Similarity=0.191  Sum_probs=64.1

Q ss_pred             HhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcC
Q 016258          234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH  313 (392)
Q Consensus       234 L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~  313 (392)
                      +..++.+....|++..|+.+++++.+.    .+...       ..+..+|.++...|++++|+..|++++++.       
T Consensus       368 ~~~la~~~~~~g~~~eA~~~~~~al~~----~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-------  429 (615)
T TIGR00990       368 YIKRASMNLELGDPDKAEEDFDKALKL----NSEDP-------DIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-------  429 (615)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------
Confidence            344555555666777777776665332    22222       245667777777788888888887777542       


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258          314 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       314 ~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~  378 (392)
                      +.       ....+.++|.++..+|++++|+..|++++.+      .|.++.....++.++..+|
T Consensus       430 P~-------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~------~P~~~~~~~~lg~~~~~~g  481 (615)
T TIGR00990       430 PD-------FIFSHIQLGVTQYKEGSIASSMATFRRCKKN------FPEAPDVYNYYGELLLDQN  481 (615)
T ss_pred             cc-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcc
Confidence            11       1223445556666666666666655555532      3444455555555555444

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.00059  Score=68.79  Aligned_cols=103  Identities=17%  Similarity=0.234  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      .++++|-+.+..+.+.+|..+|+.+|...+.+..+.+       -..-.+++||.+++.++.+++|+..|+++|.+..+-
T Consensus       416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-------~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~  488 (611)
T KOG1173|consen  416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-------FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD  488 (611)
T ss_pred             hhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc-------chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence            5788999999999999999999999976666554333       245568999999999999999999999999876654


Q ss_pred             -hcCCCch---HHHHHHHHHHHHHHHHhhcCCCC
Q 016258          358 -TLKPEEA---GLEQRRLSVLEFLNNQLSEKPPE  387 (392)
Q Consensus       358 -~~~p~~a---~~l~~~~~~~~~l~~~~~~~~~~  387 (392)
                       ..+..++   .++.++.....++++.|+-++..
T Consensus       489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence             3333322   24566666667777777666544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.38  E-value=0.0038  Score=55.73  Aligned_cols=48  Identities=15%  Similarity=0.030  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          326 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       326 sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      .+..++.++...|++++|+.+|++++.+      .|.....+..++.++...|+
T Consensus       171 ~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  218 (234)
T TIGR02521       171 SLLELAELYYLRGQYKDARAYLERYQQT------YNQTAESLWLGIRIARALGD  218 (234)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhh
Confidence            3445666666677777777666666554      23333444444444444443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.36  E-value=0.00058  Score=66.81  Aligned_cols=41  Identities=20%  Similarity=0.587  Sum_probs=34.3

Q ss_pred             CCeeccccccccccC---ceeccCCCcchHHhHHhcC--CCCCCCC
Q 016258           88 GPLSCMICQALLFEC---SKCTPCSHVYCKACISRFK--DCPLCGA  128 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~---p~~~~C~h~fC~~Ci~~~~--~CP~C~~  128 (392)
                      +--+||||++.+-..   .+++.|.|+|=..|+..||  .||+||.
T Consensus       174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~  219 (493)
T KOG0804|consen  174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRY  219 (493)
T ss_pred             cCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhh
Confidence            346899999987644   3788999999999999997  4999985

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.26  E-value=0.0054  Score=52.29  Aligned_cols=115  Identities=17%  Similarity=0.144  Sum_probs=88.3

Q ss_pred             hhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016258          236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN  315 (392)
Q Consensus       236 ~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~  315 (392)
                      .++......|++.+|+.++....    .+.+...       ..+..+|.+....|++++|+..|++++++       .+.
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al----~~~P~~~-------~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-------~p~   90 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLV----MAQPWSW-------RAHIALAGTWMMLKEYTTAINFYGHALML-------DAS   90 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH----HcCCCcH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------CCC
Confidence            35666668899999988887653    3344333       35788999999999999999999999964       232


Q ss_pred             CCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 016258          316 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQL  381 (392)
Q Consensus       316 ~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~  381 (392)
                             -+..+.++|.++..+|++++|+..|++++.      ..|+++.+..+++.+...+...+
T Consensus        91 -------~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~------~~p~~~~~~~~~~~~~~~l~~~~  143 (144)
T PRK15359         91 -------HPEPVYQTGVCLKMMGEPGLAREAFQTAIK------MSYADASWSEIRQNAQIMVDTLI  143 (144)
T ss_pred             -------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHHHHHh
Confidence                   255678899999999999999999988875      45888888888888877766544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.25  E-value=0.0023  Score=46.77  Aligned_cols=64  Identities=17%  Similarity=0.392  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q 016258          276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG-NEDVAVDGFQEAIKR  353 (392)
Q Consensus       276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g-~~~~A~~~~~eal~i  353 (392)
                      +..+..+|.++...|++++|+..|.+++++       .+       +-+..+.++|.++..+| ++++|+..|++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-------~p-------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-------DP-------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-------ST-------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CC-------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            356889999999999999999999999976       22       23557889999999999 799999999999875

...

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.23  E-value=0.00016  Score=63.17  Aligned_cols=53  Identities=28%  Similarity=0.612  Sum_probs=40.9

Q ss_pred             CeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc-chhhhHHHHH
Q 016258           89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK-IEADTTLQDV  142 (392)
Q Consensus        89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~-~~~n~~l~~~  142 (392)
                      +|.|.||...+. .|+++.|||+||..|...-.    .|-.|++.... +...-.++.|
T Consensus       196 PF~C~iCKkdy~-spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V~~d~~km  253 (259)
T COG5152         196 PFLCGICKKDYE-SPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGRFWVVSDLQKM  253 (259)
T ss_pred             ceeehhchhhcc-chhhhhcchhHHHHHHHHHhccCCcceecchhhccceeHHhhHHHH
Confidence            689999999988 99999999999999976542    49999886655 4443334333

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.20  E-value=0.00016  Score=54.22  Aligned_cols=37  Identities=38%  Similarity=0.928  Sum_probs=28.9

Q ss_pred             ecccccccccc------------CceeccCCCcchHHhHHhcC----CCCCCC
Q 016258           91 SCMICQALLFE------------CSKCTPCSHVYCKACISRFK----DCPLCG  127 (392)
Q Consensus        91 ~C~iC~~~~~~------------~p~~~~C~h~fC~~Ci~~~~----~CP~C~  127 (392)
                      .|.||+..|.+            ..+..+|||.|...||.+|.    .||+||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            49999999832            23556899999999999993    599997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.17  E-value=0.0088  Score=52.12  Aligned_cols=91  Identities=14%  Similarity=0.171  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       274 ~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                      .....+..+|.++...|++++|+..|.+++.+..     .+      .+.+.++.++|.++..+|++++|+..|++++.+
T Consensus        33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-----~~------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~  101 (168)
T CHL00033         33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-----DP------YDRSYILYNIGLIHTSNGEHTKALEYYFQALER  101 (168)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-----cc------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3456778899999999999999999999998721     11      134567899999999999999999999999976


Q ss_pred             HHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 016258          354 LESLTLKPEEAGLEQRRLSVLEFLNNQL  381 (392)
Q Consensus       354 ~e~l~~~p~~a~~l~~~~~~~~~l~~~~  381 (392)
                            +|.......+++.++..++...
T Consensus       102 ------~~~~~~~~~~la~i~~~~~~~~  123 (168)
T CHL00033        102 ------NPFLPQALNNMAVICHYRGEQA  123 (168)
T ss_pred             ------CcCcHHHHHHHHHHHHHhhHHH
Confidence                  4555666778888888666443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.17  E-value=0.012  Score=52.52  Aligned_cols=148  Identities=16%  Similarity=0.121  Sum_probs=102.7

Q ss_pred             HHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCC
Q 016258          189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD  268 (392)
Q Consensus       189 ~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~  268 (392)
                      .+...+..|++++|...+....       ...       |.+...+..++.++...|++..++.+++.+...    .+..
T Consensus        37 la~~~~~~~~~~~A~~~~~~~l-------~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~   98 (234)
T TIGR02521        37 LALGYLEQGDLEVAKENLDKAL-------EHD-------PDDYLAYLALALYYQQLGELEKAEDSFRRALTL----NPNN   98 (234)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHH-------HhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCC
Confidence            3446678899999998876331       111       222345566788887889999999998877543    2222


Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016258          269 LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ  348 (392)
Q Consensus       269 ~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~  348 (392)
                      .       ....+++.++...|++++|+..|++++....     .+       .....+.++|.++...|+++.|...|+
T Consensus        99 ~-------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~  159 (234)
T TIGR02521        99 G-------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL-----YP-------QPARSLENAGLCALKAGDFDKAEKYLT  159 (234)
T ss_pred             H-------HHHHHHHHHHHHcccHHHHHHHHHHHHhccc-----cc-------cchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            2       3567889999999999999999999986311     01       123456678999999999999999999


Q ss_pred             HHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          349 EAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       349 eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      +++.+      .|........++.++...|+
T Consensus       160 ~~~~~------~~~~~~~~~~la~~~~~~~~  184 (234)
T TIGR02521       160 RALQI------DPQRPESLLELAELYYLRGQ  184 (234)
T ss_pred             HHHHh------CcCChHHHHHHHHHHHHcCC
Confidence            98764      34444455566666655544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.04  E-value=0.0003  Score=65.49  Aligned_cols=49  Identities=31%  Similarity=0.703  Sum_probs=40.1

Q ss_pred             eeccccccccccCceeccCCCcchHHhHHhc-----CCCCCCCCCccc-chhhhHH
Q 016258           90 LSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEK-IEADTTL  139 (392)
Q Consensus        90 ~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~-~~~n~~l  139 (392)
                      -.|+||+.--. -|+.++|+|.||.-||...     ..|++||.++.. +..+..+
T Consensus         8 ~eC~IC~nt~n-~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~psl   62 (324)
T KOG0824|consen    8 KECLICYNTGN-CPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEPSL   62 (324)
T ss_pred             CcceeeeccCC-cCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcchhh
Confidence            56999999966 8999999999999999775     359999999987 4444333

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.03  E-value=0.00036  Score=64.85  Aligned_cols=51  Identities=24%  Similarity=0.708  Sum_probs=42.4

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc-chhhhHH
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK-IEADTTL  139 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~-~~~n~~l  139 (392)
                      -++.|.||...+. .|+++.|+|.||..|-....    .|++|.+.+.. +.+...|
T Consensus       240 ~Pf~c~icr~~f~-~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~~~akeL  295 (313)
T KOG1813|consen  240 LPFKCFICRKYFY-RPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSFNVAKEL  295 (313)
T ss_pred             CCccccccccccc-cchhhcCCceeehhhhccccccCCcceecccccccccchHHHH
Confidence            3688999999999 99999999999999987653    49999998877 5554444

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.99  E-value=0.00077  Score=62.49  Aligned_cols=59  Identities=27%  Similarity=0.662  Sum_probs=47.5

Q ss_pred             CeeccccccccccCceec-cCCCcchHHhHHhc-----CCCCCCCCC---cccchhhhHHHHHHHHHHh
Q 016258           89 PLSCMICQALLFECSKCT-PCSHVYCKACISRF-----KDCPLCGAD---IEKIEADTTLQDVVDRFIE  148 (392)
Q Consensus        89 ~~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~-----~~CP~C~~~---~~~~~~n~~l~~~v~~~~~  148 (392)
                      .|.|++|..+++ .|+.+ .|+|.||..||...     +.||.|...   +..+.++..-+..|+.+.+
T Consensus       274 ~LkCplc~~Llr-np~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lk  341 (427)
T COG5222         274 SLKCPLCHCLLR-NPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALK  341 (427)
T ss_pred             cccCcchhhhhh-CcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHH
Confidence            499999999999 66655 68999999999855     579999763   3338888888888888765

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=96.96  E-value=0.00013  Score=75.43  Aligned_cols=45  Identities=16%  Similarity=0.462  Sum_probs=36.4

Q ss_pred             CCeeccccccccccC--ceeccCCCcchHHhHHhcC----CCCCCCCCccc
Q 016258           88 GPLSCMICQALLFEC--SKCTPCSHVYCKACISRFK----DCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~--p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~  132 (392)
                      ..-+|++|+.-+.+.  ..-.+|+|.||..||..|.    .||+|+..|..
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence            357899999887743  3445799999999999993    59999988765

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.87  E-value=0.014  Score=51.08  Aligned_cols=89  Identities=17%  Similarity=0.212  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258          275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  354 (392)
Q Consensus       275 ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~  354 (392)
                      -......+|.++...|++++|+.+|++++++...     ..      +.+..+.++|.++..+|++++|+..|++++.+ 
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-  101 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEED-----PN------DRSYILYNMGIIYASNGEHDKALEYYHQALEL-  101 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-----cc------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence            3456788999999999999999999999986432     11      23456789999999999999999999988875 


Q ss_pred             HHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          355 ESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       355 e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                           +|........++.++..+++.
T Consensus       102 -----~p~~~~~~~~lg~~~~~~g~~  122 (172)
T PRK02603        102 -----NPKQPSALNNIAVIYHKRGEK  122 (172)
T ss_pred             -----CcccHHHHHHHHHHHHHcCCh
Confidence                 466666677777777766653

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.83  E-value=0.00096  Score=61.39  Aligned_cols=45  Identities=31%  Similarity=0.739  Sum_probs=35.8

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhc------CCCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF------KDCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~------~~CP~C~~~~~~  132 (392)
                      ....|++|......+-+..+|+|.||..||...      +.||.|+.....
T Consensus       238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~  288 (298)
T KOG2879|consen  238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP  288 (298)
T ss_pred             CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence            468999999998844444559999999999775      359999987654

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.74  E-value=0.00075  Score=65.05  Aligned_cols=43  Identities=33%  Similarity=0.700  Sum_probs=36.9

Q ss_pred             eecccccccccc--CceeccCCCcchHHhHHhcC-----CCCCCCCCccc
Q 016258           90 LSCMICQALLFE--CSKCTPCSHVYCKACISRFK-----DCPLCGADIEK  132 (392)
Q Consensus        90 ~~C~iC~~~~~~--~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~  132 (392)
                      ..|.||++.+..  .-+.|||.|.|=..||..|.     .||+|+..+..
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            599999998874  37889999999999999993     39999987665

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.69  E-value=0.0045  Score=39.43  Aligned_cols=31  Identities=16%  Similarity=0.356  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258          326 SLAKVADVDRSIGNEDVAVDGFQEAIKRLES  356 (392)
Q Consensus       326 sl~~la~~~~~~g~~~~A~~~~~eal~i~e~  356 (392)
                      ++.+||.++..+|++++|+++|++++.+.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4788999999999999999999999977654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.68  E-value=0.029  Score=63.95  Aligned_cols=148  Identities=18%  Similarity=0.182  Sum_probs=96.0

Q ss_pred             HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258          192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  271 (392)
Q Consensus       192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~  271 (392)
                      ..+..|++++|...|...       +...+       .....+..++.+....|++.+|+.+++++......... ...+
T Consensus       278 ~~~~~g~~~~A~~~l~~a-------L~~~P-------~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~-~~~~  342 (1157)
T PRK11447        278 AAVDSGQGGKAIPELQQA-------VRANP-------KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN-RDKW  342 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHH-------HHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc-hhHH
Confidence            344567777776665422       22222       23345667888887899999999999887543221111 0122


Q ss_pred             HHHHH----HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHH
Q 016258          272 IHTLS----VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF  347 (392)
Q Consensus       272 ~~~ls----~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~  347 (392)
                      ...+.    .....++.+....|++++|+..|++++++       .+.+       +..+..+|.++..+|++++|+..|
T Consensus       343 ~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-------~P~~-------~~a~~~Lg~~~~~~g~~~eA~~~y  408 (1157)
T PRK11447        343 ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV-------DNTD-------SYAVLGLGDVAMARKDYAAAERYY  408 (1157)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHHHHCCCHHHHHHHH
Confidence            22222    12345678888899999999999999876       2221       345678999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCchHHHHHHHHHH
Q 016258          348 QEAIKRLESLTLKPEEAGLEQRRLSVL  374 (392)
Q Consensus       348 ~eal~i~e~l~~~p~~a~~l~~~~~~~  374 (392)
                      ++++.+      +|++......++.+|
T Consensus       409 ~~aL~~------~p~~~~a~~~L~~l~  429 (1157)
T PRK11447        409 QQALRM------DPGNTNAVRGLANLY  429 (1157)
T ss_pred             HHHHHh------CCCCHHHHHHHHHHH
Confidence            998865      355555555555544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.60  E-value=0.037  Score=63.08  Aligned_cols=166  Identities=16%  Similarity=0.116  Sum_probs=96.5

Q ss_pred             HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHH-------HHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHH
Q 016258          190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSE-------LCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLM  262 (392)
Q Consensus       190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~-------~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~  262 (392)
                      +...++.|++++|...|....       ...+.+..       ....+-..+...+......|++.+|+.+++++...  
T Consensus       310 g~~~~~~g~~~eA~~~l~~Al-------~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--  380 (1157)
T PRK11447        310 GQAYSQQGDRARAVAQFEKAL-------ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--  380 (1157)
T ss_pred             HHHHHHcCCHHHHHHHHHHHH-------HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence            336668888888888775332       11221110       00001112223355666788889999888776543  


Q ss_pred             hCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH----------Hhhc-CCCCCcch-----------
Q 016258          263 KLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD----------AVKR-HSNVPSQV-----------  320 (392)
Q Consensus       263 ~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~----------~~~~-~~~~~~~~-----------  320 (392)
                        .+...       ..+..+|.++...|++++|+..|++++++.-.          +... ..+.....           
T Consensus       381 --~P~~~-------~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~  451 (1157)
T PRK11447        381 --DNTDS-------YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRS  451 (1157)
T ss_pred             --CCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence              23222       35678899999999999999999999874210          0000 00000000           


Q ss_pred             -hhH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          321 -LDV-----AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       321 -~dl-----a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                       .+.     ...+..++.++...|++++|+..|++++.+      +|++..+..+++.+|..+|+
T Consensus       452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~------~P~~~~~~~~LA~~~~~~G~  510 (1157)
T PRK11447        452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL------DPGSVWLTYRLAQDLRQAGQ  510 (1157)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC
Confidence             000     122345778888889999999888877753      56666666666666655443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.60  E-value=0.036  Score=54.69  Aligned_cols=113  Identities=8%  Similarity=0.078  Sum_probs=86.4

Q ss_pred             hhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 016258          238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP  317 (392)
Q Consensus       238 c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~  317 (392)
                      +...+..|++..|+.+|+++...    .+...       ..+.+++.++..+|++++|+..|++++++.       +   
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~----~P~~~-------~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-------P---   67 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDL----DPNNA-------ELYADRAQANIKLGNFTEAVADANKAIELD-------P---   67 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------c---
Confidence            44555788889999998877543    33333       256788889999999999999999998762       2   


Q ss_pred             cchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 016258          318 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQL  381 (392)
Q Consensus       318 ~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~  381 (392)
                          +.+..+.++|.++..+|+++.|+..|++++.+      +|++..+..+++.+...|.+..
T Consensus        68 ----~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l------~P~~~~~~~~l~~~~~kl~~~~  121 (356)
T PLN03088         68 ----SLAKAYLRKGTACMKLEEYQTAKAALEKGASL------APGDSRFTKLIKECDEKIAEEE  121 (356)
T ss_pred             ----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHhhh
Confidence                22456778999999999999999998888753      5777788888888888886543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=96.54  E-value=0.036  Score=61.62  Aligned_cols=104  Identities=15%  Similarity=0.106  Sum_probs=62.2

Q ss_pred             hcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhH
Q 016258          244 MGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDV  323 (392)
Q Consensus       244 ~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dl  323 (392)
                      +|++..|+..++++...    .+.        .....+++.++...|++++|+..|++++++       .+.       -
T Consensus       589 ~Gr~~eAl~~~~~AL~l----~P~--------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-------~Pd-------~  642 (987)
T PRK09782        589 PGQPELALNDLTRSLNI----APS--------ANAYVARATIYRQRHNVPAAVSDLRAALEL-------EPN-------N  642 (987)
T ss_pred             CCCHHHHHHHHHHHHHh----CCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCC-------C
Confidence            36666666665554322    111        124566677777777777777777776654       232       1


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      +..+.++|.++..+|++++|+..|+++++      .+|+++.+..+++.++..+|+
T Consensus       643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~------l~P~~~~a~~nLA~al~~lGd  692 (987)
T PRK09782        643 SNYQAALGYALWDSGDIAQSREMLERAHK------GLPDDPALIRQLAYVNQRLDD  692 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHCCC
Confidence            33556667677777777777766666654      356666666677766666554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=96.52  E-value=0.06  Score=53.09  Aligned_cols=66  Identities=20%  Similarity=0.169  Sum_probs=36.5

Q ss_pred             HhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258          234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV  305 (392)
Q Consensus       234 L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i  305 (392)
                      +..+..++...|++.+|+.+++.....    .+...  ...+......++.++...|++++|+..|++++++
T Consensus       144 ~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  209 (389)
T PRK11788        144 LQQLLEIYQQEKDWQKAIDVAERLEKL----GGDSL--RVEIAHFYCELAQQALARGDLDAARALLKKALAA  209 (389)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHh----cCCcc--hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH
Confidence            344455555667777776666554321    11111  1123334556666777777777777777777653

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.51  E-value=0.021  Score=41.14  Aligned_cols=59  Identities=17%  Similarity=0.235  Sum_probs=46.6

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       281 ~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                      .+|.++...|++++|+..|++.++       ..+       +-...+..+|.++..+|++++|+..|++++++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~-------~~P-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALK-------QDP-------DNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHC-------CST-------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH-------HCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            356778888999999888888773       333       34667888999999999999999999998854

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.44  E-value=0.065  Score=57.27  Aligned_cols=115  Identities=17%  Similarity=0.160  Sum_probs=66.0

Q ss_pred             HHhhhhhhhhhhcchhH----HHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 016258          233 VLGMLGDCCRAMGDADA----AVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD  308 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~----a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~  308 (392)
                      .+..++......|++.+    |+.+++.+..    +.+...       .....+|.++...|++++|+..|++++++   
T Consensus       248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~----l~P~~~-------~a~~~lg~~l~~~g~~~eA~~~l~~al~l---  313 (656)
T PRK15174        248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQ----FNSDNV-------RIVTLYADALIRTGQNEKAIPLLQQSLAT---  313 (656)
T ss_pred             HHHHHHHHHHHcCCchhhHHHHHHHHHHHHh----hCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence            44456666656677653    4555544432    223222       35667788888888888888888887754   


Q ss_pred             HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258          309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       309 ~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~  378 (392)
                          .+.       ....+.+++.++..+|++++|+..|++++.      .+|+...+...++.++..+|
T Consensus       314 ----~P~-------~~~a~~~La~~l~~~G~~~eA~~~l~~al~------~~P~~~~~~~~~a~al~~~G  366 (656)
T PRK15174        314 ----HPD-------LPYVRAMYARALRQVGQYTAASDEFVQLAR------EKGVTSKWNRYAAAALLQAG  366 (656)
T ss_pred             ----CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCccchHHHHHHHHHHHHCC
Confidence                222       123445677777777777777776655543      24444444444444444333

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.41  E-value=0.0075  Score=61.21  Aligned_cols=32  Identities=16%  Similarity=0.036  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          326 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       326 sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      +.-|||.-+.++|.|++|+.+|-.||.|.+.-
T Consensus       500 ~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks  531 (579)
T KOG1125|consen  500 VRYNLGISCMNLGAYKEAVKHLLEALSMQRKS  531 (579)
T ss_pred             eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence            44679999999999999999999999999985

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.38  E-value=0.12  Score=53.41  Aligned_cols=89  Identities=19%  Similarity=0.306  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHH----------
Q 016258          278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF----------  347 (392)
Q Consensus       278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~----------  347 (392)
                      ++--||.++..+++++.|.-.|+++++|-       +.+       .+.+..+|.++..+|..++|+.+|          
T Consensus       491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-------P~n-------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn  556 (638)
T KOG1126|consen  491 AWYGLGTVYLKQEKLEFAEFHFQKAVEIN-------PSN-------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN  556 (638)
T ss_pred             HHHhhhhheeccchhhHHHHHHHhhhcCC-------ccc-------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence            45567888888888888888888888652       221       223445566666666666666555          


Q ss_pred             -----------------HHHHHHHHHh-hcCCCchHHHHHHHHHHHHHHHH
Q 016258          348 -----------------QEAIKRLESL-TLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       348 -----------------~eal~i~e~l-~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                                       .+|+..+|+| +.-|+++....-++.+|-.+|+.
T Consensus       557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~  607 (638)
T KOG1126|consen  557 PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT  607 (638)
T ss_pred             chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc
Confidence                             4455666777 56688888888888888888765

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.36  E-value=0.0016  Score=67.82  Aligned_cols=43  Identities=28%  Similarity=0.768  Sum_probs=37.8

Q ss_pred             CCeeccccccccccC----ceeccCCCcchHHhHHhcC----CCCCCCCCc
Q 016258           88 GPLSCMICQALLFEC----SKCTPCSHVYCKACISRFK----DCPLCGADI  130 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~----p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~  130 (392)
                      ....|.||.+.+...    |..++|+|.|+..|+..|.    .||.||..+
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~  340 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL  340 (543)
T ss_pred             cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence            478999999999943    8999999999999999994    599999843

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=96.35  E-value=0.023  Score=48.42  Aligned_cols=81  Identities=10%  Similarity=0.015  Sum_probs=67.1

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016258          280 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL  359 (392)
Q Consensus       280 ~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~  359 (392)
                      ..+|......|++++|+..|.+++.+       .+.       ....+.++|.++..+|++++|+..|++++.+      
T Consensus        28 ~~~g~~~~~~g~~~~A~~~~~~al~~-------~P~-------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l------   87 (144)
T PRK15359         28 YASGYASWQEGDYSRAVIDFSWLVMA-------QPW-------SWRAHIALAGTWMMLKEYTTAINFYGHALML------   87 (144)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc-------CCC-------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence            35688888999999999999997744       232       3567788999999999999999999999863      


Q ss_pred             CCCchHHHHHHHHHHHHHHHH
Q 016258          360 KPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       360 ~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      +|+++....+++.++..+|+.
T Consensus        88 ~p~~~~a~~~lg~~l~~~g~~  108 (144)
T PRK15359         88 DASHPEPVYQTGVCLKMMGEP  108 (144)
T ss_pred             CCCCcHHHHHHHHHHHHcCCH
Confidence            688899999999998887764

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.32  E-value=0.002  Score=60.02  Aligned_cols=43  Identities=26%  Similarity=0.824  Sum_probs=36.4

Q ss_pred             Ceecccccccccc--CceeccCCCcchHHhHHhcC-----CCCCCCCCcc
Q 016258           89 PLSCMICQALLFE--CSKCTPCSHVYCKACISRFK-----DCPLCGADIE  131 (392)
Q Consensus        89 ~~~C~iC~~~~~~--~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~  131 (392)
                      -..|.||+.-+..  .-+.+||.|.|-..|+..|.     .||+||..++
T Consensus       323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence            3789999997763  37889999999999999993     5999998765

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.29  E-value=0.011  Score=37.55  Aligned_cols=31  Identities=35%  Similarity=0.628  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 016258          278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRD  308 (392)
Q Consensus       278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~  308 (392)
                      ++.+||.++...|++++|+.+|+++|.+...
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4689999999999999999999999987665

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.27  E-value=0.13  Score=55.18  Aligned_cols=125  Identities=10%  Similarity=-0.053  Sum_probs=87.5

Q ss_pred             HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258          192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  271 (392)
Q Consensus       192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~  271 (392)
                      .+.++|.+++|...+..+              ...+|+|......|..++...+.+.+|+..+++...    ..+.+.. 
T Consensus        95 i~~~~g~~~ea~~~l~~~--------------~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~----~~p~~~~-  155 (694)
T PRK15179         95 ALEAAHRSDEGLAVWRGI--------------HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS----GGSSSAR-  155 (694)
T ss_pred             HHHHcCCcHHHHHHHHHH--------------HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh----cCCCCHH-
Confidence            344556666665555322              226778878888888888777777888766655432    2344443 


Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                            .+..++.....+|++++|+..|++.+.       ..+       +-+..+-.+|.++..+|+.++|...|++++
T Consensus       156 ------~~~~~a~~l~~~g~~~~A~~~y~~~~~-------~~p-------~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~  215 (694)
T PRK15179        156 ------EILLEAKSWDEIGQSEQADACFERLSR-------QHP-------EFENGYVGWAQSLTRRGALWRARDVLQAGL  215 (694)
T ss_pred             ------HHHHHHHHHHHhcchHHHHHHHHHHHh-------cCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                  456677778888888899999988874       222       235567788999999999999999999998


Q ss_pred             HHHH
Q 016258          352 KRLE  355 (392)
Q Consensus       352 ~i~e  355 (392)
                      +..-
T Consensus       216 ~~~~  219 (694)
T PRK15179        216 DAIG  219 (694)
T ss_pred             HhhC
Confidence            7643

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.22  E-value=0.047  Score=45.17  Aligned_cols=97  Identities=12%  Similarity=0.036  Sum_probs=71.1

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  312 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~  312 (392)
                      .+..++......|++.+|...++....    +.+...       .....++.++...|++++|+..|++++.+       
T Consensus        19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------   80 (135)
T TIGR02552        19 QIYALAYNLYQQGRYDEALKLFQLLAA----YDPYNS-------RYWLGLAACCQMLKEYEEAIDAYALAAAL-------   80 (135)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHH----hCCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence            345566666678888888888765533    234333       35678888998899999999999888764       


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258          313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  354 (392)
Q Consensus       313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~  354 (392)
                      .+.       ....+.++|.++...|+++.|+..|++++.+.
T Consensus        81 ~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        81 DPD-------DPRPYFHAAECLLALGEPESALKALDLAIEIC  115 (135)
T ss_pred             CCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            222       24456789999999999999999988777653

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.19  E-value=0.078  Score=54.23  Aligned_cols=120  Identities=13%  Similarity=0.093  Sum_probs=80.5

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHH---------HHHH-------hCCC----CChhHHHHHHHHHHHHHHHHHhccC
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSV---------EFLM-------KLPM----DDLEIIHTLSVSLNKIGDLKYYGGD  291 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~---------~~~~-------~L~~----~~~e~~~~ls~~~~~lg~l~~~~g~  291 (392)
                      ..+.+..++||.+|++.+++.+|+.-.         +++.       .+..    ..++....--+.+-|...++...|+
T Consensus       111 ~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gk  190 (652)
T KOG2376|consen  111 KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGK  190 (652)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhccc
Confidence            466777888889999988888887541         1111       0111    0011111111234456777778899


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCC-CcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          292 LQAARSYYVRSLNVRRDAVKRHSNV-PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       292 l~~A~~~ye~sL~i~~~~~~~~~~~-~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                      |.+|++.+++++.+-++.+.....+ .+...+++..--.|+-|+..+|+.++|...|...+
T Consensus       191 y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i  251 (652)
T KOG2376|consen  191 YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII  251 (652)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            9999999999999888776555444 33345677666789999999999999998886654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.19  E-value=0.021  Score=42.25  Aligned_cols=93  Identities=19%  Similarity=0.343  Sum_probs=65.4

Q ss_pred             hhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016258          236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN  315 (392)
Q Consensus       236 ~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~  315 (392)
                      .++......|++..++.+++.....    .+...       .....++.++...+++++|+..|++++.+.       +.
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~   66 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALEL----DPDNA-------DAYYNLAAAYYKLGKYEEALEDYEKALELD-------PD   66 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhc----CCccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------Cc
Confidence            3445555678888888887665332    22221       456788889988899999999998887642       21


Q ss_pred             CCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          316 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       316 ~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                      .       ...+..++.++..+|+++.|...+++++.+
T Consensus        67 ~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          67 N-------AKAYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             c-------hhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            1       145667888999999999999988887653

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.17  E-value=0.0032  Score=62.74  Aligned_cols=44  Identities=30%  Similarity=0.773  Sum_probs=38.2

Q ss_pred             CCeeccccccccccCcee-ccCCCcchHHhHHhcC----CCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECSKC-TPCSHVYCKACISRFK----DCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~-~~C~h~fC~~Ci~~~~----~CP~C~~~~~~  132 (392)
                      ..+.|++|..++. +|+. +.|||.||..|+..|.    .||.|+.....
T Consensus        20 ~~l~C~~C~~vl~-~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~   68 (391)
T KOG0297|consen   20 ENLLCPICMSVLR-DPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQ   68 (391)
T ss_pred             ccccCcccccccc-CCCCCCCCCCcccccccchhhccCcCCcccccccch
Confidence            5699999999999 7777 5999999999999984    59999877665

>PRK11189 lipoprotein NlpI; Provisional

Probab=96.16  E-value=0.044  Score=52.55  Aligned_cols=96  Identities=16%  Similarity=0.085  Sum_probs=63.6

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhh
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK  311 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~  311 (392)
                      ..+...|.+....|++..|+..++.+..    +.+...       .++..+|.++...|++++|+..|++++++      
T Consensus        65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~----l~P~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------  127 (296)
T PRK11189         65 QLHYERGVLYDSLGLRALARNDFSQALA----LRPDMA-------DAYNYLGIYLTQAGNFDAAYEAFDSVLEL------  127 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence            3455566666677777777777665543    233332       36678888888888888888888888764      


Q ss_pred             cCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258          312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  352 (392)
Q Consensus       312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~  352 (392)
                       .++       ....+.++|.++...|++++|+..|++++.
T Consensus       128 -~P~-------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~  160 (296)
T PRK11189        128 -DPT-------YNYAYLNRGIALYYGGRYELAQDDLLAFYQ  160 (296)
T ss_pred             -CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             222       233556677777777777777777766664

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=96.12  E-value=0.0029  Score=63.10  Aligned_cols=66  Identities=18%  Similarity=0.432  Sum_probs=49.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCeeccccccccccCceeccCCCcchHHhHHhc--------
Q 016258           49 NSAKPQAEHDGDKAKSDSMDSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRF--------  120 (392)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~--------  120 (392)
                      ..++|++.+-.+.+++-..+                 ..++..|.+|.+... +++...|-|.||+.||..+        
T Consensus       513 Q~aDHP~LVl~S~~~n~~~e-----------------nk~~~~C~lc~d~ae-d~i~s~ChH~FCrlCi~eyv~~f~~~~  574 (791)
T KOG1002|consen  513 QAADHPDLVLYSANANLPDE-----------------NKGEVECGLCHDPAE-DYIESSCHHKFCRLCIKEYVESFMENN  574 (791)
T ss_pred             HhccCcceeeehhhcCCCcc-----------------ccCceeecccCChhh-hhHhhhhhHHHHHHHHHHHHHhhhccc
Confidence            45678888777644322111                 115689999999988 9999999999999999776        


Q ss_pred             -CCCCCCCCCccc
Q 016258          121 -KDCPLCGADIEK  132 (392)
Q Consensus       121 -~~CP~C~~~~~~  132 (392)
                       ..||.|...+..
T Consensus       575 nvtCP~C~i~Lsi  587 (791)
T KOG1002|consen  575 NVTCPVCHIGLSI  587 (791)
T ss_pred             CCCCccccccccc
Confidence             359999876654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.12  E-value=0.15  Score=43.99  Aligned_cols=118  Identities=14%  Similarity=0.009  Sum_probs=88.0

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  312 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~  312 (392)
                      .+.-++..-+..|++.+|..+|+-.    -.+.+.       ...-+-+||-+...+|++++|+..|..++.+.      
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L----~~~Dp~-------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~------   99 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLL----TIYDAW-------SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK------   99 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHH----HHhCcc-------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------
Confidence            3444555444899999999888643    233332       33467789999999999999999999988652      


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258          313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~  378 (392)
                       ++       -....-++|.++..+|+.+.|...|+.++....   .+|....+..+....+..|.
T Consensus       100 -~d-------dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~---~~~~~~~l~~~A~~~L~~l~  154 (157)
T PRK15363        100 -ID-------APQAPWAAAECYLACDNVCYAIKALKAVVRICG---EVSEHQILRQRAEKMLQQLS  154 (157)
T ss_pred             -CC-------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHhh
Confidence             22       244677899999999999999999999999985   45777777777777666554

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.10  E-value=0.015  Score=37.66  Aligned_cols=38  Identities=16%  Similarity=0.237  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcC
Q 016258          276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH  313 (392)
Q Consensus       276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~  313 (392)
                      ..++++|+.++..+|++++|+.+|++++++++.+.+..
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~   39 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPD   39 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhccc
Confidence            45789999999999999999999999999999886554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.07  E-value=0.12  Score=47.08  Aligned_cols=134  Identities=16%  Similarity=0.131  Sum_probs=81.2

Q ss_pred             hhhHHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCC
Q 016258          186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP  265 (392)
Q Consensus       186 l~c~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~  265 (392)
                      ..+.++-=+++|++..|+.-+...       |...+.+....       ...-.++...|++..|-..|+.+..+    .
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekA-------L~~DPs~~~a~-------~~~A~~Yq~~Ge~~~A~e~YrkAlsl----~   99 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKA-------LEHDPSYYLAH-------LVRAHYYQKLGENDLADESYRKALSL----A   99 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHH-------HHhCcccHHHH-------HHHHHHHHHcCChhhHHHHHHHHHhc----C
Confidence            344555667888888887766422       22222222111       11223445667776666666655332    3


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHH
Q 016258          266 MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVD  345 (392)
Q Consensus       266 ~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~  345 (392)
                      +.+-       .++||-|...-.+|++++|..+|+++++.        |.    ....+.++.|+|-+..+.|+...|.+
T Consensus       100 p~~G-------dVLNNYG~FLC~qg~~~eA~q~F~~Al~~--------P~----Y~~~s~t~eN~G~Cal~~gq~~~A~~  160 (250)
T COG3063         100 PNNG-------DVLNNYGAFLCAQGRPEEAMQQFERALAD--------PA----YGEPSDTLENLGLCALKAGQFDQAEE  160 (250)
T ss_pred             CCcc-------chhhhhhHHHHhCCChHHHHHHHHHHHhC--------CC----CCCcchhhhhhHHHHhhcCCchhHHH
Confidence            3332       35788888888888888888888877742        11    22456677788888888888888888


Q ss_pred             HHHHHHHHHHH
Q 016258          346 GFQEAIKRLES  356 (392)
Q Consensus       346 ~~~eal~i~e~  356 (392)
                      +|++++.+..+
T Consensus       161 ~l~raL~~dp~  171 (250)
T COG3063         161 YLKRALELDPQ  171 (250)
T ss_pred             HHHHHHHhCcC
Confidence            88877766543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=96.00  E-value=0.067  Score=59.53  Aligned_cols=98  Identities=14%  Similarity=0.140  Sum_probs=76.7

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhh
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK  311 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~  311 (392)
                      ..+..++.++...|++.+|+..++.+..    +.+...       ....++|.++...|++++|+..|++++++      
T Consensus       610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~----l~Pd~~-------~a~~nLG~aL~~~G~~eeAi~~l~~AL~l------  672 (987)
T PRK09782        610 NAYVARATIYRQRHNVPAAVSDLRAALE----LEPNNS-------NYQAALGYALWDSGDIAQSREMLERAHKG------  672 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence            3456677788788999999988877643    344444       35788898999999999999999998864      


Q ss_pred             cCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258          312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  354 (392)
Q Consensus       312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~  354 (392)
                       .+.       .+..+.++|.++..+|++++|+..|++++.+-
T Consensus       673 -~P~-------~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        673 -LPD-------DPALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             -CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence             333       24567899999999999999999999988654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=95.96  E-value=0.18  Score=49.64  Aligned_cols=61  Identities=21%  Similarity=0.062  Sum_probs=40.2

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN  304 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~  304 (392)
                      .+..++..+...|++..|..+++.....    .+.       -..+...++.++...|++++|+..|.+.++
T Consensus       109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~----~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  169 (389)
T PRK11788        109 ALQELGQDYLKAGLLDRAEELFLQLVDE----GDF-------AEGALQQLLEIYQQEKDWQKAIDVAERLEK  169 (389)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHcC----Ccc-------hHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence            3455566665677777777777665321    111       123567778888888888888888887765

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=95.93  E-value=0.21  Score=45.58  Aligned_cols=166  Identities=14%  Similarity=0.036  Sum_probs=100.3

Q ss_pred             hhhHHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCC
Q 016258          186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP  265 (392)
Q Consensus       186 l~c~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~  265 (392)
                      +...+...+..|++++|...+...       +...+.+.    .....+..++......|++..|+..++.....    .
T Consensus        36 ~~~~g~~~~~~~~~~~A~~~~~~~-------~~~~p~~~----~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~----~  100 (235)
T TIGR03302        36 LYEEAKEALDSGDYTEAIKYFEAL-------ESRYPFSP----YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL----H  100 (235)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCCch----hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----C
Confidence            344444667889999888876521       22222221    12234556777877889999999998877543    2


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHhc--------cCHHHHHHHHHHHHHHHHHHhhcCCCCCcch---hh-------HHHHH
Q 016258          266 MDDLEIIHTLSVSLNKIGDLKYYG--------GDLQAARSYYVRSLNVRRDAVKRHSNVPSQV---LD-------VAVSL  327 (392)
Q Consensus       266 ~~~~e~~~~ls~~~~~lg~l~~~~--------g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~---~d-------la~sl  327 (392)
                      +....+    ...+..+|.++...        |++++|+..|++.+..       .+.+....   ..       +....
T Consensus       101 p~~~~~----~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~a~~~~~~~~~~~~~~~  169 (235)
T TIGR03302       101 PNHPDA----DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-------YPNSEYAPDAKKRMDYLRNRLAGKE  169 (235)
T ss_pred             cCCCch----HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-------CCCChhHHHHHHHHHHHHHHHHHHH
Confidence            323322    22455666666554        5667777777766643       33322111   11       11112


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          328 AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      -.+|.++...|++.+|+..|++++....   +.|..+....+++.++..+|+.
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~a~~~l~~~~~~lg~~  219 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYP---DTPATEEALARLVEAYLKLGLK  219 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCC---CCcchHHHHHHHHHHHHHcCCH
Confidence            2578889999999999998888775532   3466666777888888777763

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=95.93  E-value=0.005  Score=43.72  Aligned_cols=36  Identities=25%  Similarity=0.501  Sum_probs=26.0

Q ss_pred             CeeccccccccccCcee-ccCCCcchHHhHHhcC------CCCC
Q 016258           89 PLSCMICQALLFECSKC-TPCSHVYCKACISRFK------DCPL  125 (392)
Q Consensus        89 ~~~C~iC~~~~~~~p~~-~~C~h~fC~~Ci~~~~------~CP~  125 (392)
                      .+.|||.+..|. +|+. ..|+|+|.+..|.++.      .||.
T Consensus        11 ~~~CPiT~~~~~-~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   11 SLKCPITLQPFE-DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             -SB-TTTSSB-S-SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             ccCCCCcCChhh-CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            589999999999 6655 6899999999999985      3998

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.92  E-value=0.21  Score=49.89  Aligned_cols=108  Identities=16%  Similarity=0.155  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 016258          225 ELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN  304 (392)
Q Consensus       225 ~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~  304 (392)
                      +.||.--+.+.-+|+.+-.++.|-=|.-+|+++.    ++.+.++.       .+.-||+.++.++++++|+..|.+++.
T Consensus       392 di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~----~~kPnDsR-------lw~aLG~CY~kl~~~~eAiKCykrai~  460 (559)
T KOG1155|consen  392 DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL----ELKPNDSR-------LWVALGECYEKLNRLEEAIKCYKRAIL  460 (559)
T ss_pred             hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH----hcCCCchH-------HHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            3566666666667788856666766777777663    45555553       467889999999999999999999985


Q ss_pred             HHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          305 VRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       305 i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      .-..      +        ...|..||+++++++++++|..+|++-++.....
T Consensus       461 ~~dt------e--------~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~e  499 (559)
T KOG1155|consen  461 LGDT------E--------GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELE  499 (559)
T ss_pred             cccc------c--------hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence            4221      1        3568899999999999999999999999977444

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.88  E-value=0.29  Score=46.28  Aligned_cols=122  Identities=14%  Similarity=0.173  Sum_probs=86.6

Q ss_pred             HHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 016258          227 CSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR  306 (392)
Q Consensus       227 C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~  306 (392)
                      +....+.|+.=|.--...+++.+|+..|.++.    +|.+.+.-+...-+.       .+..+|.++.|+...+.+|.+-
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI----~l~P~nAVyycNRAA-------Ay~~Lg~~~~AVkDce~Al~iD  145 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAI----ELDPTNAVYYCNRAA-------AYSKLGEYEDAVKDCESALSID  145 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----hcCCCcchHHHHHHH-------HHHHhcchHHHHHHHHHHHhcC
Confidence            45556777777776557778888888887763    456666655443333       4555666677777777777542


Q ss_pred             HHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          307 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       307 ~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                             +       .-..++..||.+|..+|++++|++.|+++|+      .+|++..+-.+|...-..++.
T Consensus       146 -------p-------~yskay~RLG~A~~~~gk~~~A~~aykKaLe------ldP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  146 -------P-------HYSKAYGRLGLAYLALGKYEEAIEAYKKALE------LDPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             -------h-------HHHHHHHHHHHHHHccCcHHHHHHHHHhhhc------cCCCcHHHHHHHHHHHHHhcC
Confidence                   2       2355788999999999999999999999885      478988888888776555543

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.86  E-value=0.0039  Score=60.41  Aligned_cols=46  Identities=26%  Similarity=0.704  Sum_probs=36.9

Q ss_pred             CCCeeccccccccccCc-------eeccCCCcchHHhHHhcC-----------CCCCCCCCccc
Q 016258           87 IGPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK-----------DCPLCGADIEK  132 (392)
Q Consensus        87 ~~~~~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~~-----------~CP~C~~~~~~  132 (392)
                      ..+..|.||++...+.+       ...+|.|.||..||..|.           .||.||.....
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~  222 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF  222 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence            34789999999987433       125699999999999994           39999987765

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=95.81  E-value=0.074  Score=39.15  Aligned_cols=81  Identities=22%  Similarity=0.322  Sum_probs=58.2

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258          279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT  358 (392)
Q Consensus       279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~  358 (392)
                      +..++.++...|++++|+..|++++++.       +..       ...+..+|.++...|++++|+..|++++.+     
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----   63 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD-------PDN-------ADAYYNLAAAYYKLGKYEEALEDYEKALEL-----   63 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC-------Ccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----
Confidence            4567888888899999999998887652       211       145677899999999999999888877664     


Q ss_pred             cCCCchHHHHHHHHHHHHHHH
Q 016258          359 LKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       359 ~~p~~a~~l~~~~~~~~~l~~  379 (392)
                       .|.+......++.++..+++
T Consensus        64 -~~~~~~~~~~~~~~~~~~~~   83 (100)
T cd00189          64 -DPDNAKAYYNLGLAYYKLGK   83 (100)
T ss_pred             -CCcchhHHHHHHHHHHHHHh
Confidence             34444556666766666655

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=95.77  E-value=0.14  Score=55.31  Aligned_cols=93  Identities=17%  Similarity=0.151  Sum_probs=47.9

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  312 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~  312 (392)
                      .+..++.++...|++..|+.+++.+...    .+..        .....++.++...|++++|+..|++.++.       
T Consensus       705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-------  765 (899)
T TIGR02917       705 GFELEGDLYLRQKDYPAAIQAYRKALKR----APSS--------QNAIKLHRALLASGNTAEAVKTLEAWLKT-------  765 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhh----CCCc--------hHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence            3445566665677777777777665332    1111        12334555555556666665555554432       


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                      .+.+       ...+..++.++..+|++++|+..|++++
T Consensus       766 ~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~  797 (899)
T TIGR02917       766 HPND-------AVLRTALAELYLAQKDYDKAIKHYRTVV  797 (899)
T ss_pred             CCCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            1111       2334455555555566555555555544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=95.77  E-value=0.25  Score=52.92  Aligned_cols=121  Identities=14%  Similarity=0.003  Sum_probs=80.3

Q ss_pred             HHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 016258          227 CSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR  306 (392)
Q Consensus       227 C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~  306 (392)
                      -+.+...+.+++++-...|.+.++..+++..    -++.+.+...       .-+.+.+....+++++|...+++.|   
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~----~~~~Pd~~~a-------~~~~a~~L~~~~~~eeA~~~~~~~l---  147 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGI----HQRFPDSSEA-------FILMLRGVKRQQGIEAGRAEIELYF---  147 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHH----HhhCCCcHHH-------HHHHHHHHHHhccHHHHHHHHHHHh---
Confidence            3444556677777776777778887666554    3455555544       3445555656666666666665555   


Q ss_pred             HHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258          307 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       307 ~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~  378 (392)
                          ...+++       +..+..+|.++..+|++++|...|++++.      .+|+.+..+-+++..+-.+|
T Consensus       148 ----~~~p~~-------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~------~~p~~~~~~~~~a~~l~~~G  202 (694)
T PRK15179        148 ----SGGSSS-------AREILLEAKSWDEIGQSEQADACFERLSR------QHPEFENGYVGWAQSLTRRG  202 (694)
T ss_pred             ----hcCCCC-------HHHHHHHHHHHHHhcchHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHcC
Confidence                555653       66788899999999999999999988875      34555555555665555444

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.76  E-value=0.06  Score=53.89  Aligned_cols=70  Identities=13%  Similarity=0.138  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258          273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  352 (392)
Q Consensus       273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~  352 (392)
                      ........++|..+...|++++|+..|+++|++.       +++.    +....+.++|.+|..+|++++|+..|++|++
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-------Pd~a----eA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-------PNPD----EAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCch----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3345578999999999999999999999999773       3221    2225689999999999999999999999999


Q ss_pred             H
Q 016258          353 R  353 (392)
Q Consensus       353 i  353 (392)
                      +
T Consensus       141 l  141 (453)
T PLN03098        141 D  141 (453)
T ss_pred             h
Confidence            7

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.74  E-value=0.57  Score=45.62  Aligned_cols=127  Identities=20%  Similarity=0.179  Sum_probs=87.7

Q ss_pred             cchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHH
Q 016258          245 GDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVA  324 (392)
Q Consensus       245 gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla  324 (392)
                      .|+.++.-+...+.+....++-.+-. ...-..++-.+.--+..+|++-.|.++.+++.++.....++..        -+
T Consensus       176 ~D~~Kal~f~~kA~~lv~s~~l~d~~-~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~--------~a  246 (518)
T KOG1941|consen  176 KDYEKALFFPCKAAELVNSYGLKDWS-LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL--------QA  246 (518)
T ss_pred             HhhhHHhhhhHhHHHHHHhcCcCchh-HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH--------HH
Confidence            45556665655565555555432211 1222334555666667778888999999999988665443332        36


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          325 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       325 ~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      ..+--+|++|+.+|+.+.|...|++|..+...+.+.-.+.-.+...+..|.-++-+
T Consensus       247 rc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~  302 (518)
T KOG1941|consen  247 RCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQ  302 (518)
T ss_pred             HHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            77888999999999999999999999999999855555556666777777666543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=95.71  E-value=0.092  Score=47.28  Aligned_cols=102  Identities=17%  Similarity=0.212  Sum_probs=73.0

Q ss_pred             HHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHH-HHhccC--HHHHHHHHHHHHH
Q 016258          228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDL-KYYGGD--LQAARSYYVRSLN  304 (392)
Q Consensus       228 ~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l-~~~~g~--l~~A~~~ye~sL~  304 (392)
                      |.+...+..+|.++...|++..|+..++.+.    ++.+.+.++       +..++.+ +...|+  .++|+..|+++++
T Consensus        70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al----~l~P~~~~~-------~~~lA~aL~~~~g~~~~~~A~~~l~~al~  138 (198)
T PRK10370         70 PQNSEQWALLGEYYLWRNDYDNALLAYRQAL----QLRGENAEL-------YAALATVLYYQAGQHMTPQTREMIDKALA  138 (198)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HhCCCCHHH-------HHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            3444567788898888999999998887653    445555543       4566665 455565  4677777766664


Q ss_pred             HHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258          305 VRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  354 (392)
Q Consensus       305 i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~  354 (392)
                             ..+.+       ...+..+|.++..+|++++|+..|++++++.
T Consensus       139 -------~dP~~-------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        139 -------LDANE-------VTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             -------hCCCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence                   34443       3578889999999999999999998887654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=95.69  E-value=0.19  Score=53.74  Aligned_cols=24  Identities=0%  Similarity=-0.067  Sum_probs=13.0

Q ss_pred             HhhhhhhhhhhcchhHHHhHHHHH
Q 016258          234 LGMLGDCCRAMGDADAAVAYFADS  257 (392)
Q Consensus       234 L~~~c~~C~~~gdhh~a~~~~e~~  257 (392)
                      +..++.+....|++..|+..++++
T Consensus       113 ~~~la~~l~~~g~~~~Ai~~l~~A  136 (656)
T PRK15174        113 VLLVASVLLKSKQYATVADLAEQA  136 (656)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344455544556666666555554

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.68  E-value=0.078  Score=52.62  Aligned_cols=84  Identities=15%  Similarity=0.212  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258          276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  355 (392)
Q Consensus       276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e  355 (392)
                      ..++-+||-.+..+|++++|++.|-+.+.|.+..              +..|-.++.+|+.+.+-.+|+++|-|+..   
T Consensus       524 ~ealfniglt~e~~~~ldeald~f~klh~il~nn--------------~evl~qianiye~led~aqaie~~~q~~s---  586 (840)
T KOG2003|consen  524 TEALFNIGLTAEALGNLDEALDCFLKLHAILLNN--------------AEVLVQIANIYELLEDPAQAIELLMQANS---  586 (840)
T ss_pred             HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHhhCHHHHHHHHHHhcc---
Confidence            3467788888888899999999888887775543              33466778888888887777777665543   


Q ss_pred             HhhcCCCchHHHHHHHHHHHHHHH
Q 016258          356 SLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       356 ~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                         .-|.+..++..++.+|..-|+
T Consensus       587 ---lip~dp~ilskl~dlydqegd  607 (840)
T KOG2003|consen  587 ---LIPNDPAILSKLADLYDQEGD  607 (840)
T ss_pred             ---cCCCCHHHHHHHHHHhhcccc
Confidence               346677778888887765543

>PRK12370 invasion protein regulator; Provisional

Probab=95.65  E-value=0.16  Score=53.14  Aligned_cols=45  Identities=11%  Similarity=-0.162  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 016258          326 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEF  376 (392)
Q Consensus       326 sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~  376 (392)
                      .+..+|.++..+|++++|...|++.+      ...|+.......++.+|..
T Consensus       443 ~~~~la~~l~~~G~~~eA~~~~~~~~------~~~~~~~~~~~~l~~~~~~  487 (553)
T PRK12370        443 LLSMQVMFLSLKGKHELARKLTKEIS------TQEITGLIAVNLLYAEYCQ  487 (553)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhh------hccchhHHHHHHHHHHHhc
Confidence            45678888888899888887765432      2334444444444444433

>PRK11189 lipoprotein NlpI; Provisional

Probab=95.60  E-value=0.15  Score=48.75  Aligned_cols=83  Identities=18%  Similarity=0.099  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258          276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  355 (392)
Q Consensus       276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e  355 (392)
                      ...+..+|.++...|++++|+..|.+++++       .+.       .+..+.++|.++..+|+++.|+..|++++++  
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l-------~P~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--  127 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALAL-------RPD-------MADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--  127 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence            345778899999999999999999999874       232       3567889999999999999999999888764  


Q ss_pred             HhhcCCCchHHHHHHHHHHHHHH
Q 016258          356 SLTLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       356 ~l~~~p~~a~~l~~~~~~~~~l~  378 (392)
                          +|+......+++.++..+|
T Consensus       128 ----~P~~~~a~~~lg~~l~~~g  146 (296)
T PRK11189        128 ----DPTYNYAYLNRGIALYYGG  146 (296)
T ss_pred             ----CCCCHHHHHHHHHHHHHCC
Confidence                4555556666666655443

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=95.54  E-value=0.006  Score=58.44  Aligned_cols=45  Identities=27%  Similarity=0.724  Sum_probs=37.1

Q ss_pred             CCCeeccccccccccC------------ceeccCCCcchHHhHHhcC----CCCCCCCCcc
Q 016258           87 IGPLSCMICQALLFEC------------SKCTPCSHVYCKACISRFK----DCPLCGADIE  131 (392)
Q Consensus        87 ~~~~~C~iC~~~~~~~------------p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~  131 (392)
                      +++-.|.||.+-+...            |..+||||.+-..|+..|.    .||.||.++.
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i  345 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI  345 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence            3578999999985434            4999999999999999994    5999998843

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.53  E-value=0.38  Score=53.15  Aligned_cols=112  Identities=15%  Similarity=0.107  Sum_probs=77.8

Q ss_pred             hhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCC
Q 016258          235 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS  314 (392)
Q Consensus       235 ~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~  314 (392)
                      ..++......|++..+..+++++.......+...     .....+..++.++...|++++|...+++++++.+.......
T Consensus       495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~-----~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  569 (903)
T PRK04841        495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYH-----YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL  569 (903)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc
Confidence            3455556567888888888888776666554422     22346788899999999999999999999987665321110


Q ss_pred             CCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          315 NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       315 ~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                            .-.+.....++.++...|++++|...+++++.+.+..
T Consensus       570 ------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~  606 (903)
T PRK04841        570 ------PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY  606 (903)
T ss_pred             ------cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence                  1112234457777777888888888888888877644

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=95.51  E-value=0.22  Score=53.79  Aligned_cols=163  Identities=19%  Similarity=0.173  Sum_probs=89.1

Q ss_pred             HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHH--------
Q 016258          190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFL--------  261 (392)
Q Consensus       190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~--------  261 (392)
                      +-..+..|++++|...+....       ...+       .+...+..++.+...+|++..|...++.+....        
T Consensus        29 a~~~~~~~~~~~A~~~~~~~~-------~~~p-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~   94 (899)
T TIGR02917        29 AKSYLQKNKYKAAIIQLKNAL-------QKDP-------NDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLP   94 (899)
T ss_pred             HHHHHHcCChHhHHHHHHHHH-------HhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHH
Confidence            336778889998888775332       1112       122334445555555666666665555442210        


Q ss_pred             ----------------HhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH------------------
Q 016258          262 ----------------MKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR------------------  307 (392)
Q Consensus       262 ----------------~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~------------------  307 (392)
                                      ..+..............+..+|..+...|++++|+..|+++++...                  
T Consensus        95 ~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~  174 (899)
T TIGR02917        95 LLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENR  174 (899)
T ss_pred             HHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCC
Confidence                            0000000001122345567788888888999999998888775321                  


Q ss_pred             ---------HHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258          308 ---------DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       308 ---------~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~  378 (392)
                               .+....+       +....+..++.++...|++++|+..|++++.      .+|.+......++.++...|
T Consensus       175 ~~~A~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~------~~p~~~~~~~~~~~~~~~~g  241 (899)
T TIGR02917       175 FDEARALIDEVLTADP-------GNVDALLLKGDLLLSLGNIELALAAYRKAIA------LRPNNPAVLLALATILIEAG  241 (899)
T ss_pred             HHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHh------hCCCCHHHHHHHHHHHHHcC
Confidence                     0000011       1123344566777777777777777776654      35666666666666665554


Q ss_pred             H
Q 016258          379 N  379 (392)
Q Consensus       379 ~  379 (392)
                      +
T Consensus       242 ~  242 (899)
T TIGR02917       242 E  242 (899)
T ss_pred             C
Confidence            3

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.39  E-value=0.0079  Score=57.67  Aligned_cols=43  Identities=30%  Similarity=0.821  Sum_probs=37.0

Q ss_pred             CeeccccccccccCceeccCCCcc-hHHhHHhc----CCCCCCCCCccc
Q 016258           89 PLSCMICQALLFECSKCTPCSHVY-CKACISRF----KDCPLCGADIEK  132 (392)
Q Consensus        89 ~~~C~iC~~~~~~~p~~~~C~h~f-C~~Ci~~~----~~CP~C~~~~~~  132 (392)
                      ...|-||+.-.+ +-+++||.|.. |..|....    ..||.||+++..
T Consensus       290 gkeCVIClse~r-dt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  290 GKECVICLSESR-DTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE  337 (349)
T ss_pred             CCeeEEEecCCc-ceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence            478999999999 99999999986 99997665    469999997765

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.32  E-value=0.12  Score=49.47  Aligned_cols=58  Identities=22%  Similarity=0.609  Sum_probs=45.3

Q ss_pred             Ceecccccccccc-----CceeccCCCcchHHhHHhc-----CCCCCCCCCcc--c-----chhhhHHHHHHHHH
Q 016258           89 PLSCMICQALLFE-----CSKCTPCSHVYCKACISRF-----KDCPLCGADIE--K-----IEADTTLQDVVDRF  146 (392)
Q Consensus        89 ~~~C~iC~~~~~~-----~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~--~-----~~~n~~l~~~v~~~  146 (392)
                      .+.|-||.+.+..     .|+.+.|||+||..|+...     +.||.||.+..  .     +..|+.+...+...
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~   77 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM   77 (296)
T ss_pred             CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence            3678888776553     4899999999999999876     35999999843  2     77788887777765

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.13  E-value=0.23  Score=50.35  Aligned_cols=102  Identities=23%  Similarity=0.249  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH--Hh----------hcCCCCCcchhhHHHHHHHHHHHHHhcCCH
Q 016258          273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD--AV----------KRHSNVPSQVLDVAVSLAKVADVDRSIGNE  340 (392)
Q Consensus       273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~--~~----------~~~~~~~~~~~dla~sl~~la~~~~~~g~~  340 (392)
                      ..|+..+..+|+.+...++++.++.+|+++|...+.  .+          +........-.+.+...-.-|......|+|
T Consensus       295 klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy  374 (539)
T KOG0548|consen  295 KLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY  374 (539)
T ss_pred             HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH
Confidence            447888888999999999999999999999985542  11          111100111123444444457788888999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          341 DVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       341 ~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      ..|+.+|.+|+.      .+|+++.+-.|++..|..|++.
T Consensus       375 ~~Av~~YteAIk------r~P~Da~lYsNRAac~~kL~~~  408 (539)
T KOG0548|consen  375 PEAVKHYTEAIK------RDPEDARLYSNRAACYLKLGEY  408 (539)
T ss_pred             HHHHHHHHHHHh------cCCchhHHHHHHHHHHHHHhhH
Confidence            999999999653      4599999999999999998875

>PRK12370 invasion protein regulator; Provisional

Probab=95.10  E-value=0.15  Score=53.44  Aligned_cols=117  Identities=14%  Similarity=0.026  Sum_probs=67.5

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  312 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~  312 (392)
                      .+..++.+....|++.+|+..++++..    +.+....       ....+|.++...|++++|+..|++++++       
T Consensus       340 a~~~lg~~~~~~g~~~~A~~~~~~Al~----l~P~~~~-------a~~~lg~~l~~~G~~~eAi~~~~~Al~l-------  401 (553)
T PRK12370        340 ALGLLGLINTIHSEYIVGSLLFKQANL----LSPISAD-------IKYYYGWNLFMAGQLEEALQTINECLKL-------  401 (553)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCCHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence            334455555556666667666665533    2333332       4566677777778888888877777754       


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      .+....       ....++.++...|++++|+..|++++..     .+|+.......++.++..+|+
T Consensus       402 ~P~~~~-------~~~~~~~~~~~~g~~eeA~~~~~~~l~~-----~~p~~~~~~~~la~~l~~~G~  456 (553)
T PRK12370        402 DPTRAA-------AGITKLWITYYHTGIDDAIRLGDELRSQ-----HLQDNPILLSMQVMFLSLKGK  456 (553)
T ss_pred             CCCChh-------hHHHHHHHHHhccCHHHHHHHHHHHHHh-----ccccCHHHHHHHHHHHHhCCC
Confidence            232211       1122333455567777777766665432     245566666777777766665

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=95.09  E-value=0.071  Score=38.67  Aligned_cols=49  Identities=18%  Similarity=0.146  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258          324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~  378 (392)
                      +..+..+|.++...|++++|+..|++++.+      +|+++....+++.++..++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~g~~~~~~~   51 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------DPNNAEAYYNLGLAYMKLG   51 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------STTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhC
Confidence            567888999999999999999999999986      6899999999999999988

...

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.06  E-value=0.062  Score=33.22  Aligned_cols=31  Identities=16%  Similarity=0.217  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258          324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  354 (392)
Q Consensus       324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~  354 (392)
                      |..+.++|.++..+|++++|+..|++++++-
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            3567899999999999999999999999863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.05  E-value=0.25  Score=38.74  Aligned_cols=67  Identities=21%  Similarity=0.261  Sum_probs=51.0

Q ss_pred             hccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016258          288 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL  359 (392)
Q Consensus       288 ~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~  359 (392)
                      ..|++.+|++.+.+..+..........     .......+-+++.+....|+.++|+..+++++.+-++..+
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~-----~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D   76 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNNSSS-----NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD   76 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccchh-----hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence            358999999988888876554322221     2234555777999999999999999999999999998843

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=95.02  E-value=0.38  Score=38.23  Aligned_cols=100  Identities=17%  Similarity=0.157  Sum_probs=68.9

Q ss_pred             hhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCC
Q 016258          235 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS  314 (392)
Q Consensus       235 ~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~  314 (392)
                      ...+......|++..|+.+++.....    .+...    ......-.+|.++...|+++.|+.+|++.+...       +
T Consensus         6 ~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p   70 (119)
T TIGR02795         6 YDAALLVLKAGDYADAIQAFQAFLKK----YPKST----YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-------P   70 (119)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH----CCCcc----ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-------C
Confidence            34455555778888888888766432    12111    112356678999999999999999999988532       2


Q ss_pred             CCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          315 NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       315 ~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                      ...    ....++..+|.++..+|+++.|+..|++++..
T Consensus        71 ~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        71 KSP----KAPDALLKLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             CCC----cccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            211    12445778899999999999999888777665

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.96  E-value=0.66  Score=45.19  Aligned_cols=97  Identities=18%  Similarity=0.105  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHH-----HHHHHHHH
Q 016258          276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDV-----AVDGFQEA  350 (392)
Q Consensus       276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~-----A~~~~~ea  350 (392)
                      ....--+++||...|+.+.|-..|+++..++..+.++..+        ...|.-.+..++.+....+     |+++-++.
T Consensus       246 arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgq--------v~al~g~Akc~~~~r~~~k~~~Crale~n~r~  317 (518)
T KOG1941|consen  246 ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQ--------VEALDGAAKCLETLRLQNKICNCRALEFNTRL  317 (518)
T ss_pred             HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHH--------HHHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence            3456678999999999999999999999999887665543        2234444455555444444     88888888


Q ss_pred             HHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          351 IKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       351 l~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      +++-.++...--.--+.-+++++|..+|.+
T Consensus       318 levA~~IG~K~~vlK~hcrla~iYrs~gl~  347 (518)
T KOG1941|consen  318 LEVASSIGAKLSVLKLHCRLASIYRSKGLQ  347 (518)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhccch
Confidence            888888733333334456778888666543

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=94.87  E-value=0.02  Score=43.77  Aligned_cols=42  Identities=26%  Similarity=0.629  Sum_probs=29.6

Q ss_pred             eeccccccccccCc-eeccCCCcchHHhHHhcC-------CCCCCCCCcc
Q 016258           90 LSCMICQALLFECS-KCTPCSHVYCKACISRFK-------DCPLCGADIE  131 (392)
Q Consensus        90 ~~C~iC~~~~~~~p-~~~~C~h~fC~~Ci~~~~-------~CP~C~~~~~  131 (392)
                      -.||.|.-.-.+.| +.-.|+|.|-..||..|.       .||.||+...
T Consensus        33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            34566655433334 334699999999999993       4999998653

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=94.76  E-value=0.18  Score=41.59  Aligned_cols=83  Identities=12%  Similarity=0.078  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      ....++..+...|++++|+..|++.+.+       .+.+       ...+..+|.++..+|++.+|+..|++++.+    
T Consensus        19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----   80 (135)
T TIGR02552        19 QIYALAYNLYQQGRYDEALKLFQLLAAY-------DPYN-------SRYWLGLAACCQMLKEYEEAIDAYALAAAL----   80 (135)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHh-------CCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence            4567888888899999999999887654       2221       345667899999999999999888877664    


Q ss_pred             hcCCCchHHHHHHHHHHHHHHHH
Q 016258          358 TLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       358 ~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                        +|++......++.++..+|+.
T Consensus        81 --~p~~~~~~~~la~~~~~~g~~  101 (135)
T TIGR02552        81 --DPDDPRPYFHAAECLLALGEP  101 (135)
T ss_pred             --CCCChHHHHHHHHHHHHcCCH
Confidence              577778888888888877653

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=94.76  E-value=0.76  Score=41.90  Aligned_cols=61  Identities=15%  Similarity=0.115  Sum_probs=46.7

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258          279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA  350 (392)
Q Consensus       279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea  350 (392)
                      .-.++.++...|++.+|+..|++.++..-       ..    ...+..+..++.++..+|++++|+.+++..
T Consensus       169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p-------~~----~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l  229 (235)
T TIGR03302       169 ELYVARFYLKRGAYVAAINRFETVVENYP-------DT----PATEEALARLVEAYLKLGLKDLAQDAAAVL  229 (235)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHCC-------CC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34678889999999999999999886522       11    134556778999999999999999876543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=94.74  E-value=0.24  Score=48.86  Aligned_cols=82  Identities=22%  Similarity=0.225  Sum_probs=63.8

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258          279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT  358 (392)
Q Consensus       279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~  358 (392)
                      +...|.-....|++++|+..|.++|++       .+.       -+..+.++|.++..+|+++.|+..|++++.+     
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~-------~P~-------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-----   65 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDL-------DPN-------NAELYADRAQANIKLGNFTEAVADANKAIEL-----   65 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            344567777889999999999999864       222       2446778999999999999999998888775     


Q ss_pred             cCCCchHHHHHHHHHHHHHHHH
Q 016258          359 LKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       359 ~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                       +|..+....+++.++..+|+.
T Consensus        66 -~P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088         66 -DPSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             -CcCCHHHHHHHHHHHHHhCCH
Confidence             577777777888888877764

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=94.71  E-value=0.015  Score=40.41  Aligned_cols=43  Identities=28%  Similarity=0.843  Sum_probs=33.5

Q ss_pred             CeeccccccccccCceeccCCCcchHHhHHh--cCCCCCCCCCccc
Q 016258           89 PLSCMICQALLFECSKCTPCSHVYCKACISR--FKDCPLCGADIEK  132 (392)
Q Consensus        89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~--~~~CP~C~~~~~~  132 (392)
                      ...|-.|...-. ..++++|+|..|..|+..  +..||.|..++..
T Consensus         7 ~~~~~~~~~~~~-~~~~~pCgH~I~~~~f~~~rYngCPfC~~~~~~   51 (55)
T PF14447_consen    7 EQPCVFCGFVGT-KGTVLPCGHLICDNCFPGERYNGCPFCGTPFEF   51 (55)
T ss_pred             ceeEEEcccccc-ccccccccceeeccccChhhccCCCCCCCcccC
Confidence            355667776644 789999999999999754  4789999987653

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.60  E-value=0.76  Score=50.81  Aligned_cols=128  Identities=16%  Similarity=0.097  Sum_probs=86.0

Q ss_pred             hhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016258          237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV  316 (392)
Q Consensus       237 ~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~  316 (392)
                      .+.++...|++..+..+++++...   +....   ..........++.++...|++++|...|++++...+....     
T Consensus       458 ~a~~~~~~g~~~~A~~~~~~al~~---~~~~~---~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~-----  526 (903)
T PRK04841        458 RAQVAINDGDPEEAERLAELALAE---LPLTW---YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV-----  526 (903)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhc---CCCcc---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc-----
Confidence            445555677787888777766542   22211   1123345678899999999999999999999987664321     


Q ss_pred             CcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh--cCCCchHHHHHHHHHHHHHH
Q 016258          317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT--LKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       317 ~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~--~~p~~a~~l~~~~~~~~~l~  378 (392)
                         ....+..+.+++.++...|+++.|...+++++.+.+...  ..+....+...++.++...|
T Consensus       527 ---~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G  587 (903)
T PRK04841        527 ---YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA  587 (903)
T ss_pred             ---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence               113355778899999999999999999999999988762  11222333344444444443

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=94.56  E-value=0.015  Score=56.26  Aligned_cols=42  Identities=31%  Similarity=0.847  Sum_probs=36.7

Q ss_pred             eeccccccccccCceeccCCCcchHHhHHhcC------CCCCCCCCccc
Q 016258           90 LSCMICQALLFECSKCTPCSHVYCKACISRFK------DCPLCGADIEK  132 (392)
Q Consensus        90 ~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~~~  132 (392)
                      -.|.||.+-=. +..+-||||..|..|+..|-      .||.||..+..
T Consensus       370 eLCKICaendK-dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG  417 (563)
T KOG1785|consen  370 ELCKICAENDK-DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG  417 (563)
T ss_pred             HHHHHhhccCC-CcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence            45899999855 89999999999999999994      49999988776

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=94.51  E-value=0.38  Score=45.34  Aligned_cols=91  Identities=22%  Similarity=0.271  Sum_probs=63.7

Q ss_pred             hhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhh
Q 016258          243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD  322 (392)
Q Consensus       243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~d  322 (392)
                      ..|++..++..|+.....   . +...    ....+.-.||.+++..|++++|+..|++.++..       +.+.    .
T Consensus       155 ~~~~y~~Ai~af~~fl~~---y-P~s~----~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-------P~s~----~  215 (263)
T PRK10803        155 DKSRQDDAIVAFQNFVKK---Y-PDST----YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-------PKSP----K  215 (263)
T ss_pred             hcCCHHHHHHHHHHHHHH---C-cCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCc----c
Confidence            357777777776554332   2 2221    123456799999999999999999998887542       2221    2


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258          323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIK  352 (392)
Q Consensus       323 la~sl~~la~~~~~~g~~~~A~~~~~eal~  352 (392)
                      ....+-++|.++..+|++++|+..|++.++
T Consensus       216 ~~dAl~klg~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        216 AADAMFKVGVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            355677899999999999999988886654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.41  E-value=0.42  Score=48.16  Aligned_cols=80  Identities=14%  Similarity=0.195  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH----------------hhcCCCCCc---chhhHHH--------HHHHH
Q 016258          278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA----------------VKRHSNVPS---QVLDVAV--------SLAKV  330 (392)
Q Consensus       278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~----------------~~~~~~~~~---~~~dla~--------sl~~l  330 (392)
                      ..+--+++...++++++|..+|..++++....                +-...++..   .+...|.        ...-|
T Consensus       464 vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tl  543 (606)
T KOG0547|consen  464 VYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETL  543 (606)
T ss_pred             HHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHH
Confidence            45555677777888888888888887754320                000111110   1111111        12347


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          331 ADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       331 a~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      |.+..++|+.++|+++|+++..+-+..
T Consensus       544 aq~~lQ~~~i~eAielFEksa~lArt~  570 (606)
T KOG0547|consen  544 AQFELQRGKIDEAIELFEKSAQLARTE  570 (606)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence            888899999999999999999887764

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=94.40  E-value=0.49  Score=44.63  Aligned_cols=47  Identities=17%  Similarity=0.222  Sum_probs=33.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          328 AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      ..+|.++..+|++++|+.+|++++      ..+|++..++..++.++...|+.
T Consensus       218 ~~la~~~~~lg~~~~Al~~~~~~~------~~~p~d~~~~~~~a~~l~~~g~~  264 (280)
T PF13429_consen  218 DALAAAYLQLGRYEEALEYLEKAL------KLNPDDPLWLLAYADALEQAGRK  264 (280)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHH------HHSTT-HHHHHHHHHHHT-----
T ss_pred             HHHHHHhccccccccccccccccc------ccccccccccccccccccccccc
Confidence            457888999999988888877755      45789999999999999888764

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.38  E-value=0.037  Score=51.00  Aligned_cols=45  Identities=22%  Similarity=0.614  Sum_probs=35.1

Q ss_pred             CCeecccccccccc---------CceeccCCCcchHHhHHhcC------CCCCCCCCccc
Q 016258           88 GPLSCMICQALLFE---------CSKCTPCSHVYCKACISRFK------DCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~---------~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~~~  132 (392)
                      ++..|.||..-+..         +...+.|+|+|=..||..|-      .||.|++.+..
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl  282 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL  282 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence            45678888776542         34688999999999999992      49999987654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.34  E-value=0.12  Score=31.67  Aligned_cols=29  Identities=17%  Similarity=0.263  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          325 VSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       325 ~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                      ..+..+|.++..+|++++|+..|++++.+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            45778999999999999999999999976

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.26  E-value=0.026  Score=53.84  Aligned_cols=47  Identities=30%  Similarity=0.560  Sum_probs=38.5

Q ss_pred             CCcCCCeeccccccccccCceeccCCCcchHHhHHhc----CCCCCCCCCcc
Q 016258           84 SFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIE  131 (392)
Q Consensus        84 ~~~~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~  131 (392)
                      -.+.++..|+||-.-.. ..+..||+|.-|+.||.++    +.|-.|+..+.
T Consensus       417 lp~sEd~lCpICyA~pi-~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~  467 (489)
T KOG4692|consen  417 LPDSEDNLCPICYAGPI-NAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI  467 (489)
T ss_pred             CCCcccccCcceecccc-hhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence            34457899999999877 8899999999999999998    45777876444

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.24  E-value=0.0056  Score=42.16  Aligned_cols=42  Identities=38%  Similarity=0.738  Sum_probs=33.8

Q ss_pred             eeccccccccccCceeccCCCcc-hHHhHHhcC-----CCCCCCCCccc
Q 016258           90 LSCMICQALLFECSKCTPCSHVY-CKACISRFK-----DCPLCGADIEK  132 (392)
Q Consensus        90 ~~C~iC~~~~~~~p~~~~C~h~f-C~~Ci~~~~-----~CP~C~~~~~~  132 (392)
                      -.|.||.+-.. +.++-.|||.. |..|-.+.|     .||.||+++..
T Consensus         8 dECTICye~pv-dsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d   55 (62)
T KOG4172|consen    8 DECTICYEHPV-DSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD   55 (62)
T ss_pred             cceeeeccCcc-hHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence            56999999988 88999999864 888866653     49999986543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=94.24  E-value=0.12  Score=31.72  Aligned_cols=30  Identities=13%  Similarity=0.282  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258          325 VSLAKVADVDRSIGNEDVAVDGFQEAIKRL  354 (392)
Q Consensus       325 ~sl~~la~~~~~~g~~~~A~~~~~eal~i~  354 (392)
                      ..+-.+|.++..+|++++|+..|++++++-
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELN   31 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            457789999999999999999999999874

...

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.23  E-value=0.55  Score=47.06  Aligned_cols=113  Identities=17%  Similarity=0.206  Sum_probs=77.4

Q ss_pred             hcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH----------------
Q 016258          244 MGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR----------------  307 (392)
Q Consensus       244 ~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~----------------  307 (392)
                      .++|.+|+.+|+.++..           ......++.-||.=+..+..-.+|++.|..+++|-.                
T Consensus       343 r~eHEKAv~YFkRALkL-----------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim  411 (559)
T KOG1155|consen  343 RSEHEKAVMYFKRALKL-----------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIM  411 (559)
T ss_pred             HHhHHHHHHHHHHHHhc-----------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHh
Confidence            45566788887766432           222334677788888888888899999999888642                


Q ss_pred             -----------HHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 016258          308 -----------DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEF  376 (392)
Q Consensus       308 -----------~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~  376 (392)
                                 ++..-.+.      | ...+.-||++|+.+++.++|+.-|..|+..-+      .+.+.+.+++.+++.
T Consensus       412 ~Mh~YaLyYfqkA~~~kPn------D-sRlw~aLG~CY~kl~~~~eAiKCykrai~~~d------te~~~l~~LakLye~  478 (559)
T KOG1155|consen  412 KMHFYALYYFQKALELKPN------D-SRLWVALGECYEKLNRLEEAIKCYKRAILLGD------TEGSALVRLAKLYEE  478 (559)
T ss_pred             cchHHHHHHHHHHHhcCCC------c-hHHHHHHHHHHHHhccHHHHHHHHHHHHhccc------cchHHHHHHHHHHHH
Confidence                       11211222      1 23455689999999999999999988876533      245668888888887


Q ss_pred             HHHH
Q 016258          377 LNNQ  380 (392)
Q Consensus       377 l~~~  380 (392)
                      |.+.
T Consensus       479 l~d~  482 (559)
T KOG1155|consen  479 LKDL  482 (559)
T ss_pred             HHhH
Confidence            7653

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=94.21  E-value=0.65  Score=35.13  Aligned_cols=83  Identities=16%  Similarity=0.212  Sum_probs=55.4

Q ss_pred             hcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhH
Q 016258          244 MGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDV  323 (392)
Q Consensus       244 ~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dl  323 (392)
                      .|++..|+.+++........    ..     -...+-.++..+...|++++|+..+++ ++....              .
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~----~~-----~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~--------------~   57 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPT----NP-----NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS--------------N   57 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCG----TH-----HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC--------------H
T ss_pred             CccHHHHHHHHHHHHHHCCC----Ch-----hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC--------------C
Confidence            46678888888776544322    10     122445589999999999999999988 322111              1


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258          324 AVSLAKVADVDRSIGNEDVAVDGFQEA  350 (392)
Q Consensus       324 a~sl~~la~~~~~~g~~~~A~~~~~ea  350 (392)
                      ....-.+|.++..+|++++|++.|+++
T Consensus        58 ~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   58 PDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            222335699999999999999998875

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=94.11  E-value=0.72  Score=36.58  Aligned_cols=87  Identities=14%  Similarity=0.070  Sum_probs=59.2

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258          279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT  358 (392)
Q Consensus       279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~  358 (392)
                      .-.++......|++++|+..|++.+..       .+...    .....+..+|.++...|+++.|+.+|++++...   .
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p   70 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKK-------YPKST----YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY---P   70 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH-------CCCcc----ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC---C
Confidence            456777888889999999999988753       12211    123345679999999999999999988887532   2


Q ss_pred             cCCCchHHHHHHHHHHHHHHH
Q 016258          359 LKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       359 ~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      .++........++.++..+++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~   91 (119)
T TIGR02795        71 KSPKAPDALLKLGMSLQELGD   91 (119)
T ss_pred             CCCcccHHHHHHHHHHHHhCC
Confidence            233334456666666665544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.09  E-value=0.04  Score=53.67  Aligned_cols=51  Identities=27%  Similarity=0.669  Sum_probs=38.5

Q ss_pred             Ceecccccccccc----CceeccCCCcchHHhHHhc------CCCCCCCCCccc--chhhhHH
Q 016258           89 PLSCMICQALLFE----CSKCTPCSHVYCKACISRF------KDCPLCGADIEK--IEADTTL  139 (392)
Q Consensus        89 ~~~C~iC~~~~~~----~p~~~~C~h~fC~~Ci~~~------~~CP~C~~~~~~--~~~n~~l  139 (392)
                      ..+||||++-..-    ..+.+.|||.|-..||++|      ..||.|.....+  +.+-..+
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~al   66 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYAL   66 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHH
Confidence            3689999997653    2567889999999999999      359999876554  4444433

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=94.04  E-value=0.79  Score=49.67  Aligned_cols=92  Identities=21%  Similarity=0.241  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      +.-.++.++. +++...++..|..++.+.......-+         ...||++|..+..+|++.+|...|.+|+..+...
T Consensus       416 a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip---------~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~  485 (1018)
T KOG2002|consen  416 AWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIP---------PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV  485 (1018)
T ss_pred             HHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCC---------HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence            4445566664 34555559999999988776554422         4468999999999999999999999999997766


Q ss_pred             -hcC---CCchHHHHHHHHHHHHHHH
Q 016258          358 -TLK---PEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       358 -~~~---p~~a~~l~~~~~~~~~l~~  379 (392)
                       ..+   .-...+..|++.+++.+++
T Consensus       486 ~n~de~~~~~lt~~YNlarl~E~l~~  511 (1018)
T KOG2002|consen  486 ANKDEGKSTNLTLKYNLARLLEELHD  511 (1018)
T ss_pred             cCccccccchhHHHHHHHHHHHhhhh
Confidence             221   2234568899988888754

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=94.03  E-value=0.73  Score=38.93  Aligned_cols=92  Identities=18%  Similarity=0.202  Sum_probs=63.2

Q ss_pred             hhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016258          237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV  316 (392)
Q Consensus       237 ~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~  316 (392)
                      +....+..|+..+|+..++.....   -  .++.+.   ..+.-.|+.++...|++++|+..+++.       ..  .. 
T Consensus        54 lA~~~~~~g~~~~A~~~l~~~~~~---~--~d~~l~---~~a~l~LA~~~~~~~~~d~Al~~L~~~-------~~--~~-  115 (145)
T PF09976_consen   54 LAKAAYEQGDYDEAKAALEKALAN---A--PDPELK---PLARLRLARILLQQGQYDEALATLQQI-------PD--EA-  115 (145)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhh---C--CCHHHH---HHHHHHHHHHHHHcCCHHHHHHHHHhc-------cC--cc-
Confidence            455666788888888887765432   1  222232   234557888999999999999877441       00  00 


Q ss_pred             CcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       317 ~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                           -.......+|+++...|++++|+..|++|+
T Consensus       116 -----~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  116 -----FKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             -----hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence                 112345679999999999999999999875

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.95  E-value=0.63  Score=34.91  Aligned_cols=44  Identities=23%  Similarity=0.302  Sum_probs=37.3

Q ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchH
Q 016258          322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAG  365 (392)
Q Consensus       322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~a~  365 (392)
                      +.|..+...|.-....|++++|+..|+++++.|.++ ...||...
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~   48 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT   48 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence            457778888888889999999999999999999998 66666554

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=93.83  E-value=0.68  Score=39.97  Aligned_cols=83  Identities=7%  Similarity=-0.077  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      .+-.++...+..|++++|+..|+-...+       ++       ..++-+-+||.++..+|++++|+..|..++.+    
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~-------Dp-------~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----   98 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIY-------DA-------WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----   98 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-------Cc-------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence            4556678888899999999999877644       22       24667788999999999999999999988754    


Q ss_pred             hcCCCchHHHHHHHHHHHHHHHH
Q 016258          358 TLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       358 ~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                        +|+++..-.+.+.++-.+|+.
T Consensus        99 --~~ddp~~~~~ag~c~L~lG~~  119 (157)
T PRK15363         99 --KIDAPQAPWAAAECYLACDNV  119 (157)
T ss_pred             --CCCCchHHHHHHHHHHHcCCH
Confidence              467777777888888777764

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=93.77  E-value=0.95  Score=37.31  Aligned_cols=83  Identities=23%  Similarity=0.188  Sum_probs=56.6

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016258          280 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL  359 (392)
Q Consensus       280 ~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~  359 (392)
                      =+++..+...|+.++|+..|+++++.     .-...      +....+-.+|..+..+|++++|+..+++++.      .
T Consensus         5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~------~~~~a~i~lastlr~LG~~deA~~~L~~~~~------~   67 (120)
T PF12688_consen    5 YELAWAHDSLGREEEAIPLYRRALAA-----GLSGA------DRRRALIQLASTLRNLGRYDEALALLEEALE------E   67 (120)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCch------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------H
Confidence            35566778889999999999999862     11111      2234455799999999999999988877653      3


Q ss_pred             CCC---chHHHHHHHHHHHHHHH
Q 016258          360 KPE---EAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       360 ~p~---~a~~l~~~~~~~~~l~~  379 (392)
                      +|+   ...+..-++.++..+|+
T Consensus        68 ~p~~~~~~~l~~f~Al~L~~~gr   90 (120)
T PF12688_consen   68 FPDDELNAALRVFLALALYNLGR   90 (120)
T ss_pred             CCCccccHHHHHHHHHHHHHCCC
Confidence            344   55555555666555554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=93.72  E-value=0.34  Score=50.29  Aligned_cols=141  Identities=18%  Similarity=0.130  Sum_probs=81.4

Q ss_pred             HHHHhhhhhhhhhhcchhHHHhHHHHHHHHH----------H-hCCCCChhH-HHHH-----------HHHHHHHHHHHH
Q 016258          231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFL----------M-KLPMDDLEI-IHTL-----------SVSLNKIGDLKY  287 (392)
Q Consensus       231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~----------~-~L~~~~~e~-~~~l-----------s~~~~~lg~l~~  287 (392)
                      +..+-.+|..|+.++++..+..+|+......          . .|+--..++ ...|           -+++--+|+.+.
T Consensus       353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS  432 (638)
T KOG1126|consen  353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFS  432 (638)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhh
Confidence            4566778888889999988888887652221          0 111100000 0111           134555699999


Q ss_pred             hccCHHHHHHHHHHHHHHHHHH------hhcCCCCCcchhhHHHH---------------HHHHHHHHHhcCCHHHHHHH
Q 016258          288 YGGDLQAARSYYVRSLNVRRDA------VKRHSNVPSQVLDVAVS---------------LAKVADVDRSIGNEDVAVDG  346 (392)
Q Consensus       288 ~~g~l~~A~~~ye~sL~i~~~~------~~~~~~~~~~~~dla~s---------------l~~la~~~~~~g~~~~A~~~  346 (392)
                      -+++.+.|+..|++++++-...      .+.+.- ...-+|.|..               +--||.||.+++.++.|.-+
T Consensus       433 LQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~  511 (638)
T KOG1126|consen  433 LQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFH  511 (638)
T ss_pred             hhhHHHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHH
Confidence            9999999999999999854311      111000 0001222211               11277889999999888888


Q ss_pred             HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258          347 FQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       347 ~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~  378 (392)
                      |++|++|      .|.+..++--++.+++.++
T Consensus       512 fqkA~~I------NP~nsvi~~~~g~~~~~~k  537 (638)
T KOG1126|consen  512 FQKAVEI------NPSNSVILCHIGRIQHQLK  537 (638)
T ss_pred             HHhhhcC------CccchhHHhhhhHHHHHhh
Confidence            8777654      3444455555555554444

>TIGR00540 hemY_coli hemY protein

Probab=93.60  E-value=1.6  Score=43.84  Aligned_cols=95  Identities=9%  Similarity=0.023  Sum_probs=56.6

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHH-----------HHHhhcCCCCCcchh-----------hHH--HHHHHHHHHHH
Q 016258          280 NKIGDLKYYGGDLQAARSYYVRSLNVR-----------RDAVKRHSNVPSQVL-----------DVA--VSLAKVADVDR  335 (392)
Q Consensus       280 ~~lg~l~~~~g~l~~A~~~ye~sL~i~-----------~~~~~~~~~~~~~~~-----------dla--~sl~~la~~~~  335 (392)
                      -.++.++...|++++|...+++.++..           +....-.+++.....           +-.  ..+..+|.++.
T Consensus       267 ~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~  346 (409)
T TIGR00540       267 IALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLM  346 (409)
T ss_pred             HHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence            344667777899999999998888732           111112222222111           112  34556788889


Q ss_pred             hcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          336 SIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       336 ~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      ..|++++|.++|+.+...    ..+|+...+. .++.++..+|+
T Consensus       347 ~~~~~~~A~~~le~a~a~----~~~p~~~~~~-~La~ll~~~g~  385 (409)
T TIGR00540       347 KHGEFIEAADAFKNVAAC----KEQLDANDLA-MAADAFDQAGD  385 (409)
T ss_pred             HcccHHHHHHHHHHhHHh----hcCCCHHHHH-HHHHHHHHcCC
Confidence            999999999988843222    2245555544 66777665554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF04641 Rtf2: Rtf2 RING-finger

Probab=93.54  E-value=0.14  Score=48.23  Aligned_cols=46  Identities=22%  Similarity=0.582  Sum_probs=37.9

Q ss_pred             CCCeecccccccccc---CceeccCCCcchHHhHHhcC---CCCCCCCCccc
Q 016258           87 IGPLSCMICQALLFE---CSKCTPCSHVYCKACISRFK---DCPLCGADIEK  132 (392)
Q Consensus        87 ~~~~~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~~~---~CP~C~~~~~~  132 (392)
                      ...+.|||....|..   -..+.+|||+|+..+|....   .||+|..+|..
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~~  162 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFTE  162 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCcccc
Confidence            357999999988752   14566999999999999886   69999999876

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=93.50  E-value=0.54  Score=42.29  Aligned_cols=83  Identities=18%  Similarity=0.153  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHH-HHhcCCH--HHHHHHHHHHHHHH
Q 016258          278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADV-DRSIGNE--DVAVDGFQEAIKRL  354 (392)
Q Consensus       278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~-~~~~g~~--~~A~~~~~eal~i~  354 (392)
                      .+..||.++...|++++|+..|++++++.       +++       ...+..+|.+ +...|++  ++|...|++++   
T Consensus        75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-------P~~-------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al---  137 (198)
T PRK10370         75 QWALLGEYYLWRNDYDNALLAYRQALQLR-------GEN-------AELYAALATVLYYQAGQHMTPQTREMIDKAL---  137 (198)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCC-------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH---
Confidence            57788999999999999999999988652       322       3455667775 3565653  44444433333   


Q ss_pred             HHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          355 ESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       355 e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                         ..+|.+...+..++..+..+|+.
T Consensus       138 ---~~dP~~~~al~~LA~~~~~~g~~  160 (198)
T PRK10370        138 ---ALDANEVTALMLLASDAFMQADY  160 (198)
T ss_pred             ---HhCCCChhHHHHHHHHHHHcCCH
Confidence               56777777778788777766654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.35  E-value=0.23  Score=30.51  Aligned_cols=30  Identities=27%  Similarity=0.507  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 016258          277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVR  306 (392)
Q Consensus       277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~  306 (392)
                      ..+.++|.++..+|++++|+..|+++|++.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            467899999999999999999999999863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.31  E-value=0.32  Score=48.95  Aligned_cols=90  Identities=19%  Similarity=0.254  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                      ....+..+++.|+-.+..|.|++|+.+|.++|+..-.              -..-++|++..|+.+|++++.++.-.+|+
T Consensus       111 ~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~--------------epiFYsNraAcY~~lgd~~~Vied~TkAL  176 (606)
T KOG0547|consen  111 RLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD--------------EPIFYSNRAACYESLGDWEKVIEDCTKAL  176 (606)
T ss_pred             HHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC--------------CchhhhhHHHHHHHHhhHHHHHHHHHHHh
Confidence            3456677889999999999999999999999975321              03457788888888888877775544444


Q ss_pred             HHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 016258          352 KRLESLTLKPEEAGLEQRRLSVLEFLNNQL  381 (392)
Q Consensus       352 ~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~  381 (392)
                            +-.|+-+-.+.|+++.++.||++-
T Consensus       177 ------El~P~Y~KAl~RRA~A~E~lg~~~  200 (606)
T KOG0547|consen  177 ------ELNPDYVKALLRRASAHEQLGKFD  200 (606)
T ss_pred             ------hcCcHHHHHHHHHHHHHHhhccHH
Confidence                  446776667777888888887764

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.30  E-value=0.019  Score=53.48  Aligned_cols=41  Identities=29%  Similarity=0.696  Sum_probs=35.8

Q ss_pred             CeeccccccccccCceeccCCCcc-hHHhHHhcCCCCCCCCCc
Q 016258           89 PLSCMICQALLFECSKCTPCSHVY-CKACISRFKDCPLCGADI  130 (392)
Q Consensus        89 ~~~C~iC~~~~~~~p~~~~C~h~f-C~~Ci~~~~~CP~C~~~~  130 (392)
                      ...|.||.+..+ +=+.++|||.. |..|=.+...||.||+.+
T Consensus       300 ~~LC~ICmDaP~-DCvfLeCGHmVtCt~CGkrm~eCPICRqyi  341 (350)
T KOG4275|consen  300 RRLCAICMDAPR-DCVFLECGHMVTCTKCGKRMNECPICRQYI  341 (350)
T ss_pred             HHHHHHHhcCCc-ceEEeecCcEEeehhhccccccCchHHHHH
Confidence            467999999988 88999999976 999988888999999743

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=93.23  E-value=0.38  Score=35.13  Aligned_cols=57  Identities=14%  Similarity=0.151  Sum_probs=44.2

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          283 GDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       283 g~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                      ..++...+++++|+..+++.+.+       .+++       ...+-..|.++..+|++++|+..|++++++
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~-------~p~~-------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALEL-------DPDD-------PELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHh-------Cccc-------chhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45777888999999988888866       3332       334556889999999999999999888843

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=93.20  E-value=0.65  Score=43.75  Aligned_cols=63  Identities=21%  Similarity=0.274  Sum_probs=30.5

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258          279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  355 (392)
Q Consensus       279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e  355 (392)
                      ...++.++..+|+.++|+.+|++.+..       .+.      | ...+..+|+++...|+.++|...+++++..++
T Consensus       217 ~~~la~~~~~lg~~~~Al~~~~~~~~~-------~p~------d-~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~  279 (280)
T PF13429_consen  217 WDALAAAYLQLGRYEEALEYLEKALKL-------NPD------D-PLWLLAYADALEQAGRKDEALRLRRQALRLLR  279 (280)
T ss_dssp             CHHHHHHHHHHT-HHHHHHHHHHHHHH-------STT--------HHHHHHHHHHHT--------------------
T ss_pred             HHHHHHHhccccccccccccccccccc-------ccc------c-cccccccccccccccccccccccccccccccC
Confidence            345677888888999999988887743       332      2 44677899999999999999999999988765

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=93.12  E-value=1.9  Score=46.19  Aligned_cols=165  Identities=18%  Similarity=0.131  Sum_probs=92.3

Q ss_pred             HHHHhhcHHHHHHHhhhcHHHH--HHHHHhcCCcH---HHHHHH-----HHHHhhhhhhhhhhcchhHHHhHHHHHH---
Q 016258          192 RAFRAQNVESAKSRLSLCTEDI--RDQIERMGNTS---ELCSQL-----GAVLGMLGDCCRAMGDADAAVAYFADSV---  258 (392)
Q Consensus       192 ~a~~~g~~~~A~~~~~~c~~h~--~~~l~~~~~~~---~~C~~h-----~~~L~~~c~~C~~~gdhh~a~~~~e~~~---  258 (392)
                      -|+.-|-+++|+..|..|..+-  ..++...+.-.   +.-..|     ...+..|...-...+|-..|+.+||.+.   
T Consensus       809 LAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~ha  888 (1416)
T KOG3617|consen  809 LAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHA  888 (1416)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChH
Confidence            4556677888888888887552  22222221111   111111     1123334433346677788888888772   


Q ss_pred             -HHHHhCCCCChhHHHHHH-----HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH----hhcCCCCCcch----hhHH
Q 016258          259 -EFLMKLPMDDLEIIHTLS-----VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA----VKRHSNVPSQV----LDVA  324 (392)
Q Consensus       259 -~~~~~L~~~~~e~~~~ls-----~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~----~~~~~~~~~~~----~dla  324 (392)
                       +.-+-|...-..+...+.     ..+...|...+..|+.+.|+.+|+.+-.-.-.+    ..-......++    -|.|
T Consensus       889 fev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~A  968 (1416)
T KOG3617|consen  889 FEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKA  968 (1416)
T ss_pred             HHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHH
Confidence             222222222222222222     345566777888899999999999987633111    00111111111    1334


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          325 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       325 ~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      .. -+||..|++.|+..+|+.+|.+|...-.-+
T Consensus       969 Ac-YhlaR~YEn~g~v~~Av~FfTrAqafsnAI 1000 (1416)
T KOG3617|consen  969 AC-YHLARMYENDGDVVKAVKFFTRAQAFSNAI 1000 (1416)
T ss_pred             HH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            32 368999999999999999998887665544

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.94  E-value=0.063  Score=49.01  Aligned_cols=59  Identities=25%  Similarity=0.591  Sum_probs=41.6

Q ss_pred             Ceecccccccccc-CceeccCCCcchHHhHHhc-C-CCCCCCCCcccchhhhHHHHHHHHHH
Q 016258           89 PLSCMICQALLFE-CSKCTPCSHVYCKACISRF-K-DCPLCGADIEKIEADTTLQDVVDRFI  147 (392)
Q Consensus        89 ~~~C~iC~~~~~~-~p~~~~C~h~fC~~Ci~~~-~-~CP~C~~~~~~~~~n~~l~~~v~~~~  147 (392)
                      .+.|..|...... +=.++.|.|.||..|.... . .||+|+.++..+..|..+-.-|-.|+
T Consensus         3 ~VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ir~i~l~~slp~~ik~~F   64 (233)
T KOG4739|consen    3 FVHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPDVCPLCKKSIRIIQLNRSLPTDIKSYF   64 (233)
T ss_pred             eEEeccccccCCCCceeeeechhhhhhhhcccCCccccccccceeeeeecccccchhHHHHc
Confidence            3567777765332 2467789999999999765 3 69999999777666655555555554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=92.53  E-value=2.6  Score=39.15  Aligned_cols=113  Identities=17%  Similarity=0.131  Sum_probs=77.9

Q ss_pred             hhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016258          237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV  316 (392)
Q Consensus       237 ~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~  316 (392)
                      ++..-...|++..|+..+.+.    ..+.+.+.+       .++-+|-++...|+++.|...|.+++++.-.    +   
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA----~~l~p~d~~-------~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~----~---  167 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKA----ARLAPTDWE-------AWNLLGAALDQLGRFDEARRAYRQALELAPN----E---  167 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHH----hccCCCChh-------hhhHHHHHHHHccChhHHHHHHHHHHHhccC----C---
Confidence            444444566666666665443    345555543       5778888999999999999999999976321    1   


Q ss_pred             CcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       317 ~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                             ...++|||-.+.-.|+++.|..++..+.      ...+.+..+..|++.++...|+.
T Consensus       168 -------p~~~nNlgms~~L~gd~~~A~~lll~a~------l~~~ad~~v~~NLAl~~~~~g~~  218 (257)
T COG5010         168 -------PSIANNLGMSLLLRGDLEDAETLLLPAY------LSPAADSRVRQNLALVVGLQGDF  218 (257)
T ss_pred             -------chhhhhHHHHHHHcCCHHHHHHHHHHHH------hCCCCchHHHHHHHHHHhhcCCh
Confidence                   2357899999999999998887654443      44555677777777777666653

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.50  E-value=2.2  Score=42.75  Aligned_cols=51  Identities=14%  Similarity=0.108  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      ...+.||+.-|....-.++|+.+|+++--      -.|...-|+-++++.+...||.
T Consensus       626 ie~iewl~ayyidtqf~ekai~y~ekaal------iqp~~~kwqlmiasc~rrsgny  676 (840)
T KOG2003|consen  626 IETIEWLAAYYIDTQFSEKAINYFEKAAL------IQPNQSKWQLMIASCFRRSGNY  676 (840)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHh------cCccHHHHHHHHHHHHHhcccH
Confidence            34567777777766666677766665532      3467777888888887776654

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.49  E-value=3.9  Score=37.98  Aligned_cols=92  Identities=17%  Similarity=0.109  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      +...++-+...+..+.++.++|+++..+..+...-.+        -+..|.+-|.+.++ -+-+.|+.+|++++.++++-
T Consensus        73 ayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt--------AAmaleKAak~len-v~Pd~AlqlYqralavve~~  143 (308)
T KOG1585|consen   73 AYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT--------AAMALEKAAKALEN-VKPDDALQLYQRALAVVEED  143 (308)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch--------HHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHhcc
Confidence            3444444555555666666777777666655433222        24455666666655 44566666777776666654


Q ss_pred             hcCCCchHHHHHHHHHHHHHH
Q 016258          358 TLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       358 ~~~p~~a~~l~~~~~~~~~l~  378 (392)
                      ........+....+.++=.++
T Consensus       144 dr~~ma~el~gk~sr~lVrl~  164 (308)
T KOG1585|consen  144 DRDQMAFELYGKCSRVLVRLE  164 (308)
T ss_pred             chHHHHHHHHHHhhhHhhhhH
Confidence            332333333444444443333

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=92.42  E-value=0.079  Score=49.78  Aligned_cols=41  Identities=32%  Similarity=0.721  Sum_probs=33.0

Q ss_pred             CeeccccccccccCceeccCCCcchHHhHHhc--CCCCCCCCC
Q 016258           89 PLSCMICQALLFECSKCTPCSHVYCKACISRF--KDCPLCGAD  129 (392)
Q Consensus        89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~--~~CP~C~~~  129 (392)
                      ..+|.-|---+..=-++++|.|.||..|-...  +.||.|...
T Consensus        90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~  132 (389)
T KOG2932|consen   90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDR  132 (389)
T ss_pred             eEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccH
Confidence            57788887665546789999999999998665  579999753

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.39  E-value=0.38  Score=29.29  Aligned_cols=29  Identities=21%  Similarity=0.414  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258          277 VSLNKIGDLKYYGGDLQAARSYYVRSLNV  305 (392)
Q Consensus       277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i  305 (392)
                      ..+..+|.++...|++++|+..|++++++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            45678999999999999999999999976

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=92.39  E-value=5.9  Score=35.01  Aligned_cols=89  Identities=12%  Similarity=0.081  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhc----CCHHHHHHHHHHH
Q 016258          278 SLNKIGDLKYYGG---DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSI----GNEDVAVDGFQEA  350 (392)
Q Consensus       278 ~~~~lg~l~~~~g---~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~----g~~~~A~~~~~ea  350 (392)
                      .+.+.|.....+.   +..+++.+|++++...+.++.-.|..       ...+-.+|.++..+    .+..+|..+|++|
T Consensus        27 nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-------hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA   99 (186)
T PF06552_consen   27 NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-------HDALWCLGNAYTSLAFLTPDTAEAEEYFEKA   99 (186)
T ss_dssp             HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--------HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-------HHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence            4555555554443   44567788888888888877777764       44555555555544    3446888999999


Q ss_pred             HHHHHHh-hcCCCchHHHHHHHHH
Q 016258          351 IKRLESL-TLKPEEAGLEQRRLSV  373 (392)
Q Consensus       351 l~i~e~l-~~~p~~a~~l~~~~~~  373 (392)
                      ....++. ..+|.+..+...|...
T Consensus       100 ~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen  100 TEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             HHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHH
Confidence            9999998 8889988888776654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.19  E-value=0.33  Score=31.34  Aligned_cols=33  Identities=15%  Similarity=0.247  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          325 VSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       325 ~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      ..+..||++....+++++|+.-|+++++|.+++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l   34 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEEL   34 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            356789999999999999999999999999987

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=92.16  E-value=1.7  Score=41.04  Aligned_cols=83  Identities=11%  Similarity=0.011  Sum_probs=57.0

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCC
Q 016258          283 GDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPE  362 (392)
Q Consensus       283 g~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~  362 (392)
                      -.+....|++++|+..|++.++.       .++..    -....+-|+|.+|...|+++.|+..|+.+++..   ..+|.
T Consensus       150 ~~l~~~~~~y~~Ai~af~~fl~~-------yP~s~----~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y---P~s~~  215 (263)
T PRK10803        150 IALVQDKSRQDDAIVAFQNFVKK-------YPDST----YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY---PKSPK  215 (263)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHH-------CcCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcc
Confidence            33444457888888887776644       34321    123456799999999999999998877766543   34556


Q ss_pred             chHHHHHHHHHHHHHHH
Q 016258          363 EAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       363 ~a~~l~~~~~~~~~l~~  379 (392)
                      ....+.+++.++..+++
T Consensus       216 ~~dAl~klg~~~~~~g~  232 (263)
T PRK10803        216 AADAMFKVGVIMQDKGD  232 (263)
T ss_pred             hhHHHHHHHHHHHHcCC
Confidence            66777778888766654

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.13  E-value=3.5  Score=37.98  Aligned_cols=62  Identities=15%  Similarity=0.216  Sum_probs=34.6

Q ss_pred             hhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHH
Q 016258          241 CRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYG-GDLQAARSYYVRSLNVRR  307 (392)
Q Consensus       241 C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~-g~l~~A~~~ye~sL~i~~  307 (392)
                      |+..++..+|+...+.+-++....+.     -.+-+.-.-.|+++++.. .++++|+..|+++-+-..
T Consensus        83 cykk~~~~eAv~cL~~aieIyt~~Gr-----f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk  145 (288)
T KOG1586|consen   83 CYKKVDPEEAVNCLEKAIEIYTDMGR-----FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK  145 (288)
T ss_pred             HhhccChHHHHHHHHHHHHHHHhhhH-----HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence            33444444444444444444333322     112223344678888765 788888888888877554

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=92.08  E-value=1.4  Score=42.66  Aligned_cols=92  Identities=14%  Similarity=0.095  Sum_probs=59.4

Q ss_pred             hhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016258          237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV  316 (392)
Q Consensus       237 ~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~  316 (392)
                      ++.+....|++..+...++++.+    +.+..       ......++.+++..|++++|+..|++.+.....    .+  
T Consensus       120 ~a~~~~~~G~~~~A~~~~~~al~----~~p~~-------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~--  182 (355)
T cd05804         120 LAFGLEEAGQYDRAEEAARRALE----LNPDD-------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SS--  182 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh----hCCCC-------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----Cc--
Confidence            33455556666666666655533    23333       234667788888888888888888887754321    11  


Q ss_pred             CcchhhH-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258          317 PSQVLDV-AVSLAKVADVDRSIGNEDVAVDGFQEA  350 (392)
Q Consensus       317 ~~~~~dl-a~sl~~la~~~~~~g~~~~A~~~~~ea  350 (392)
                           +. ....-.++.++..+|++++|+..|+++
T Consensus       183 -----~~~~~~~~~la~~~~~~G~~~~A~~~~~~~  212 (355)
T cd05804         183 -----MLRGHNWWHLALFYLERGDYEAALAIYDTH  212 (355)
T ss_pred             -----chhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                 11 223346888888889998888888887

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=91.97  E-value=1.3  Score=37.17  Aligned_cols=31  Identities=23%  Similarity=0.163  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 016258          276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVR  306 (392)
Q Consensus       276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~  306 (392)
                      +..+.--|......|+++.|++.|.++|.+.
T Consensus        43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~   73 (175)
T KOG4555|consen   43 SRELELKAIALAEAGDLDGALELFGQALCLA   73 (175)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhc
Confidence            3334444444555678888888888877653

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=91.61  E-value=1.2  Score=43.98  Aligned_cols=73  Identities=10%  Similarity=0.081  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchh-hHHHHHHHHHHHHHhcCCHHHHHHH
Q 016258          274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL-DVAVSLAKVADVDRSIGNEDVAVDG  346 (392)
Q Consensus       274 ~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~-dla~sl~~la~~~~~~g~~~~A~~~  346 (392)
                      ..+.....-|+.++..|+|..|...|++++...........+....+. .....+.||+.++..++.|.+|+..
T Consensus       206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~  279 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIES  279 (397)
T ss_pred             HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Confidence            345566777999999999999999999999865422111111111111 2223455777777777777666654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=91.57  E-value=0.58  Score=30.86  Aligned_cols=41  Identities=20%  Similarity=0.251  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Q 016258          326 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLS  372 (392)
Q Consensus       326 sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~  372 (392)
                      .+..+|.++..+|++++|+..|+++++      .+|++......++.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~------~~P~~~~a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALA------LDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH------HCcCCHHHHHHhhh
Confidence            356789999999999999988887775      57887777666553

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=91.52  E-value=13  Score=40.33  Aligned_cols=75  Identities=12%  Similarity=0.303  Sum_probs=50.1

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHh-----CCCCChhHHHHHH-----HHHHHHHHHHHhccCHHHHHHHHHH
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMK-----LPMDDLEIIHTLS-----VSLNKIGDLKYYGGDLQAARSYYVR  301 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~-----L~~~~~e~~~~ls-----~~~~~lg~l~~~~g~l~~A~~~ye~  301 (392)
                      ..+.|.|.--...|+...|+.+|+.+.+....     +.++..+......     .+--.|+..|++.|++.+|+..|.+
T Consensus       913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr  992 (1416)
T KOG3617|consen  913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR  992 (1416)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            35678887554789999999999988777654     2222222221111     1233467888899999999999988


Q ss_pred             HHHHH
Q 016258          302 SLNVR  306 (392)
Q Consensus       302 sL~i~  306 (392)
                      +-...
T Consensus       993 Aqafs  997 (1416)
T KOG3617|consen  993 AQAFS  997 (1416)
T ss_pred             HHHHH
Confidence            76533

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=91.47  E-value=1.2  Score=43.08  Aligned_cols=58  Identities=17%  Similarity=0.075  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016258          278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE  349 (392)
Q Consensus       278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e  349 (392)
                      ....++.++...|++++|...|++++++.       +++       ...+..++.++...|++++|+.+|++
T Consensus       116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-------p~~-------~~~~~~la~i~~~~g~~~eA~~~l~~  173 (355)
T cd05804         116 LLGMLAFGLEEAGQYDRAEEAARRALELN-------PDD-------AWAVHAVAHVLEMQGRFKEGIAFMES  173 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCC-------cHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            45566777777888888888888887652       111       22344456666666666666665543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.42  E-value=0.088  Score=50.71  Aligned_cols=42  Identities=31%  Similarity=0.744  Sum_probs=33.9

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhc---CCCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF---KDCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~---~~CP~C~~~~~~  132 (392)
                      .+..|.||++-.. +.+-+||||..|  |+.-.   ..||+||..+..
T Consensus       304 ~p~lcVVcl~e~~-~~~fvpcGh~cc--ct~cs~~l~~CPvCR~rI~~  348 (355)
T KOG1571|consen  304 QPDLCVVCLDEPK-SAVFVPCGHVCC--CTLCSKHLPQCPVCRQRIRL  348 (355)
T ss_pred             CCCceEEecCCcc-ceeeecCCcEEE--chHHHhhCCCCchhHHHHHH
Confidence            5688999999988 799999999987  65433   579999986544

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=91.41  E-value=5.8  Score=36.14  Aligned_cols=79  Identities=19%  Similarity=0.184  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       274 ~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                      .++...-+|+-++...|+-+....+++++++...++......-.... +-+..+=-+|++...+|++++|+.+|.+.+..
T Consensus       116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~-~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGM-DEATLLYLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            55667778888999999988999999999998888887665433322 33444557999999999999999888776543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.25  E-value=1.7  Score=41.22  Aligned_cols=89  Identities=20%  Similarity=0.163  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                      ...+++.++.-|+-...-++|++|+..|.++|++       .+.+       ++-+.+-+.+|..+|.++.|+.-.+.++
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l-------~P~n-------AVyycNRAAAy~~Lg~~~~AVkDce~Al  142 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL-------DPTN-------AVYYCNRAAAYSKLGEYEDAVKDCESAL  142 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-------CCCc-------chHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            4567788888898888889999999999999865       3332       5678889999999999999997766666


Q ss_pred             HHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          352 KRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       352 ~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      .|      +|.-.-...|++..|..+|+.
T Consensus       143 ~i------Dp~yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen  143 SI------DPHYSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             hc------ChHHHHHHHHHHHHHHccCcH
Confidence            54      333333344555555555443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=91.18  E-value=0.6  Score=28.49  Aligned_cols=31  Identities=19%  Similarity=0.374  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 016258          277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRR  307 (392)
Q Consensus       277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~  307 (392)
                      .++-.+|.++..+|++++|+.+|++++++..
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3567899999999999999999999998753

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=91.17  E-value=2.3  Score=37.57  Aligned_cols=84  Identities=10%  Similarity=0.075  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchHHHHHHHHHH
Q 016258          296 RSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRRLSVL  374 (392)
Q Consensus       296 ~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~a~~l~~~~~~~  374 (392)
                      +-.|+++.+..+.....++.+.+.+......|-.|++.    ..-.++..+|++|+.-++.. ..+|+...-++.++..|
T Consensus         4 l~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqf----k~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~   79 (186)
T PF06552_consen    4 LLFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQF----KQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAY   79 (186)
T ss_dssp             HHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH----S-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhc----cCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            34677888888877888887655555555455555543    33356778888888888886 88899999999999999


Q ss_pred             HHHHHHhhc
Q 016258          375 EFLNNQLSE  383 (392)
Q Consensus       375 ~~l~~~~~~  383 (392)
                      ..++...++
T Consensus        80 ts~A~l~~d   88 (186)
T PF06552_consen   80 TSLAFLTPD   88 (186)
T ss_dssp             HHHHHH---
T ss_pred             HHHHhhcCC
Confidence            988876554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.16  E-value=0.17  Score=46.11  Aligned_cols=44  Identities=18%  Similarity=0.397  Sum_probs=37.2

Q ss_pred             CeeccccccccccC---ceeccCCCcchHHhHHhc----CCCCCCCCCccc
Q 016258           89 PLSCMICQALLFEC---SKCTPCSHVYCKACISRF----KDCPLCGADIEK  132 (392)
Q Consensus        89 ~~~C~iC~~~~~~~---p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~  132 (392)
                      .+.||||.+.|.+.   .+.-+|||+||..|++.+    ..||+|..++..
T Consensus       221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkd  271 (303)
T KOG3039|consen  221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKD  271 (303)
T ss_pred             ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcc
Confidence            48899999999863   567799999999999998    459999987654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=91.06  E-value=7.6  Score=42.08  Aligned_cols=126  Identities=20%  Similarity=0.258  Sum_probs=89.1

Q ss_pred             HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258          190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL  269 (392)
Q Consensus       190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~  269 (392)
                      |..+|.+|++++|...+-   |.++.           =|.+...+..++.++..+|++.++.-.+-.    ...|.+.+.
T Consensus       146 AN~lfarg~~eeA~~i~~---EvIkq-----------dp~~~~ay~tL~~IyEqrGd~eK~l~~~ll----AAHL~p~d~  207 (895)
T KOG2076|consen  146 ANNLFARGDLEEAEEILM---EVIKQ-----------DPRNPIAYYTLGEIYEQRGDIEKALNFWLL----AAHLNPKDY  207 (895)
T ss_pred             HHHHHHhCCHHHHHHHHH---HHHHh-----------CccchhhHHHHHHHHHHcccHHHHHHHHHH----HHhcCCCCh
Confidence            458888999999987553   22211           133456788899999889999887755433    356667665


Q ss_pred             hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016258          270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE  349 (392)
Q Consensus       270 e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e  349 (392)
                      +       .+..++++...+|.+..|+-+|.++|..       .+.+       ...+-+-+.++.+.|++..|.+.|.+
T Consensus       208 e-------~W~~ladls~~~~~i~qA~~cy~rAI~~-------~p~n-------~~~~~ers~L~~~~G~~~~Am~~f~~  266 (895)
T KOG2076|consen  208 E-------LWKRLADLSEQLGNINQARYCYSRAIQA-------NPSN-------WELIYERSSLYQKTGDLKRAMETFLQ  266 (895)
T ss_pred             H-------HHHHHHHHHHhcccHHHHHHHHHHHHhc-------CCcc-------hHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            5       4566777888888888999999998854       3332       22344567889999999999998887


Q ss_pred             HHHHH
Q 016258          350 AIKRL  354 (392)
Q Consensus       350 al~i~  354 (392)
                      .+...
T Consensus       267 l~~~~  271 (895)
T KOG2076|consen  267 LLQLD  271 (895)
T ss_pred             HHhhC
Confidence            76544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=90.91  E-value=2.1  Score=39.25  Aligned_cols=75  Identities=15%  Similarity=0.079  Sum_probs=36.3

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 016258          281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK  360 (392)
Q Consensus       281 ~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~  360 (392)
                      -+..++..+|+.+.|.+.|+++|.+.       +.       -++.|||-|-.+..+|.+++|..+|++|+.-    ..-
T Consensus        74 ~~A~~Yq~~Ge~~~A~e~YrkAlsl~-------p~-------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~----P~Y  135 (250)
T COG3063          74 VRAHYYQKLGENDLADESYRKALSLA-------PN-------NGDVLNNYGAFLCAQGRPEEAMQQFERALAD----PAY  135 (250)
T ss_pred             HHHHHHHHcCChhhHHHHHHHHHhcC-------CC-------ccchhhhhhHHHHhCCChHHHHHHHHHHHhC----CCC
Confidence            34555555555555555555555331       11       1334556665555556655555555555421    222


Q ss_pred             CCchHHHHHHHHH
Q 016258          361 PEEAGLEQRRLSV  373 (392)
Q Consensus       361 p~~a~~l~~~~~~  373 (392)
                      +..++...|++-+
T Consensus       136 ~~~s~t~eN~G~C  148 (250)
T COG3063         136 GEPSDTLENLGLC  148 (250)
T ss_pred             CCcchhhhhhHHH
Confidence            4444444444444

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.70  E-value=1.8  Score=44.40  Aligned_cols=82  Identities=13%  Similarity=0.132  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258          279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT  358 (392)
Q Consensus       279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~  358 (392)
                      ..-||.|++..|+|+.|++.|+.+|.+       .|.       -....|+||..+.+-.+.++|++.|++|+++.    
T Consensus       433 Q~~LGVLy~ls~efdraiDcf~~AL~v-------~Pn-------d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq----  494 (579)
T KOG1125|consen  433 QSGLGVLYNLSGEFDRAVDCFEAALQV-------KPN-------DYLLWNRLGATLANGNRSEEAISAYNRALQLQ----  494 (579)
T ss_pred             HhhhHHHHhcchHHHHHHHHHHHHHhc-------CCc-------hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC----
Confidence            456788998899999999999998854       333       25578999999999899999999999999764    


Q ss_pred             cCCCchHHHHHHHHHHHHHHHH
Q 016258          359 LKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       359 ~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                        |.=...++|++..+=.||-.
T Consensus       495 --P~yVR~RyNlgIS~mNlG~y  514 (579)
T KOG1125|consen  495 --PGYVRVRYNLGISCMNLGAY  514 (579)
T ss_pred             --CCeeeeehhhhhhhhhhhhH
Confidence              44344456666666555543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=90.63  E-value=6.3  Score=38.03  Aligned_cols=21  Identities=19%  Similarity=0.373  Sum_probs=13.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHH
Q 016258          330 VADVDRSIGNEDVAVDGFQEA  350 (392)
Q Consensus       330 la~~~~~~g~~~~A~~~~~ea  350 (392)
                      +|++....|+|++|++.++.+
T Consensus       220 lG~v~~~~g~y~~AV~~~e~v  240 (389)
T COG2956         220 LGRVELAKGDYQKAVEALERV  240 (389)
T ss_pred             hhHHHHhccchHHHHHHHHHH
Confidence            666777777766666554433

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.58  E-value=0.62  Score=30.07  Aligned_cols=34  Identities=12%  Similarity=0.336  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258          277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV  310 (392)
Q Consensus       277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~  310 (392)
                      .....||++....++|.+|+..|+++|++++...
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~   35 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELL   35 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            3567899999999999999999999999998765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=90.54  E-value=7.9  Score=38.32  Aligned_cols=127  Identities=17%  Similarity=0.108  Sum_probs=81.7

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChh----HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLE----IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR  307 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e----~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~  307 (392)
                      ...+..|...+..|++..|...|+.+...+.--.....+    .....-....||...+..++++.+|+....+.|++  
T Consensus       209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--  286 (397)
T KOG0543|consen  209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--  286 (397)
T ss_pred             HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--
Confidence            345566777778899988888888775444422221111    22233346778888888888888888877777754  


Q ss_pred             HHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258          308 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       308 ~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~  378 (392)
                           .+.++       ..|=.-|.++..+|+|+.|...|++++++      .|.+.....-|..+....+
T Consensus       287 -----~~~N~-------KALyRrG~A~l~~~e~~~A~~df~ka~k~------~P~Nka~~~el~~l~~k~~  339 (397)
T KOG0543|consen  287 -----DPNNV-------KALYRRGQALLALGEYDLARDDFQKALKL------EPSNKAARAELIKLKQKIR  339 (397)
T ss_pred             -----CCCch-------hHHHHHHHHHHhhccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHH
Confidence                 34332       34555678888889999998888887753      5666665555555544433

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=90.46  E-value=0.058  Score=40.00  Aligned_cols=43  Identities=28%  Similarity=0.790  Sum_probs=20.2

Q ss_pred             CeeccccccccccC-----ceec--cCCCcchHHhHHhcC---------------CCCCCCCCcc
Q 016258           89 PLSCMICQALLFEC-----SKCT--PCSHVYCKACISRFK---------------DCPLCGADIE  131 (392)
Q Consensus        89 ~~~C~iC~~~~~~~-----p~~~--~C~h~fC~~Ci~~~~---------------~CP~C~~~~~  131 (392)
                      ++.|+||..++.+.     .+..  .|+..|=..|+..|+               .||.|+.++.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            46899999985522     2222  688888889999982               2999998764

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=90.41  E-value=0.81  Score=34.59  Aligned_cols=73  Identities=21%  Similarity=0.245  Sum_probs=46.9

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q 016258          289 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQ  368 (392)
Q Consensus       289 ~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~  368 (392)
                      .|+++.|+..|++.++....       +     .....+-++|.++..+|++++|+..+++       +..++.......
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~-------~-----~~~~~~~~la~~~~~~~~y~~A~~~~~~-------~~~~~~~~~~~~   62 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPT-------N-----PNSAYLYNLAQCYFQQGKYEEAIELLQK-------LKLDPSNPDIHY   62 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCG-------T-----HHHHHHHHHHHHHHHTTHHHHHHHHHHC-------HTHHHCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCC-------C-----hhHHHHHHHHHHHHHCCCHHHHHHHHHH-------hCCCCCCHHHHH
Confidence            57888888888888865432       0     0122445589999999999999988877       212233344455


Q ss_pred             HHHHHHHHHHHH
Q 016258          369 RRLSVLEFLNNQ  380 (392)
Q Consensus       369 ~~~~~~~~l~~~  380 (392)
                      .++.++..|++.
T Consensus        63 l~a~~~~~l~~y   74 (84)
T PF12895_consen   63 LLARCLLKLGKY   74 (84)
T ss_dssp             HHHHHHHHTT-H
T ss_pred             HHHHHHHHhCCH
Confidence            557777666653

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=90.31  E-value=8  Score=38.60  Aligned_cols=93  Identities=17%  Similarity=0.204  Sum_probs=55.4

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHH-----HHhhc-CCCCCcchhhH-----------HHHHHHHHHHHHhcCCHHH
Q 016258          280 NKIGDLKYYGGDLQAARSYYVRSLNVRR-----DAVKR-HSNVPSQVLDV-----------AVSLAKVADVDRSIGNEDV  342 (392)
Q Consensus       280 ~~lg~l~~~~g~l~~A~~~ye~sL~i~~-----~~~~~-~~~~~~~~~dl-----------a~sl~~la~~~~~~g~~~~  342 (392)
                      -.++......|+.++|....++.++...     .+... ...+.......           +..+--+|.++...+++.+
T Consensus       267 ~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~  346 (398)
T PRK10747        267 VAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQE  346 (398)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            3446677778999999998888887220     01110 11111111122           2234457888999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          343 AVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       343 A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      |.++|++++++      .|+...+. .++.++..+|+
T Consensus       347 A~~~le~al~~------~P~~~~~~-~La~~~~~~g~  376 (398)
T PRK10747        347 ASLAFRAALKQ------RPDAYDYA-WLADALDRLHK  376 (398)
T ss_pred             HHHHHHHHHhc------CCCHHHHH-HHHHHHHHcCC
Confidence            99999888765      45554433 35555555544

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=90.15  E-value=0.34  Score=46.31  Aligned_cols=44  Identities=36%  Similarity=0.844  Sum_probs=37.0

Q ss_pred             cCCCeeccccccccccCceeccCCCcchHHhHHhc------CCCCCCCCCc
Q 016258           86 KIGPLSCMICQALLFECSKCTPCSHVYCKACISRF------KDCPLCGADI  130 (392)
Q Consensus        86 ~~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~------~~CP~C~~~~  130 (392)
                      +.+.-.|.||..-+. =..++||+|..|..|-.+.      +.||.|+..-
T Consensus        58 DEen~~C~ICA~~~T-Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~  107 (493)
T COG5236          58 DEENMNCQICAGSTT-YSARYPCGHQICHACAVRLRALYMQKGCPLCRTET  107 (493)
T ss_pred             ccccceeEEecCCce-EEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence            445688999999977 8889999999999997665      5799999754

>PRK15331 chaperone protein SicA; Provisional

Probab=89.98  E-value=6.2  Score=34.32  Aligned_cols=120  Identities=15%  Similarity=0.146  Sum_probs=84.8

Q ss_pred             hhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016258          237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV  316 (392)
Q Consensus       237 ~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~  316 (392)
                      ++.--+..|++.+|..+|.-    +-.+..-+.++       +-.||......+++++|+..|.-+..+..    .++. 
T Consensus        43 ~Ay~~y~~Gk~~eA~~~F~~----L~~~d~~n~~Y-------~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~----~dp~-  106 (165)
T PRK15331         43 HAYEFYNQGRLDEAETFFRF----LCIYDFYNPDY-------TMGLAAVCQLKKQFQKACDLYAVAFTLLK----NDYR-  106 (165)
T ss_pred             HHHHHHHCCCHHHHHHHHHH----HHHhCcCcHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHccc----CCCC-
Confidence            33333488999999888853    23344444433       56778888888899999999888775421    1111 


Q ss_pred             CcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCCCCC
Q 016258          317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQLSEKPPES  388 (392)
Q Consensus       317 ~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~~~~~~~~  388 (392)
                               ..=+.|+.+..+|+...|...|+-++.       .|.++.+..+-...+..|.+...+....+
T Consensus       107 ---------p~f~agqC~l~l~~~~~A~~~f~~a~~-------~~~~~~l~~~A~~~L~~l~~~~~~~~~~~  162 (165)
T PRK15331        107 ---------PVFFTGQCQLLMRKAAKARQCFELVNE-------RTEDESLRAKALVYLEALKTAETEQHSEQ  162 (165)
T ss_pred             ---------ccchHHHHHHHhCCHHHHHHHHHHHHh-------CcchHHHHHHHHHHHHHHHcccccccccc
Confidence                     123578999999999999998888877       47788888888888887777766655544

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=89.91  E-value=0.17  Score=41.89  Aligned_cols=44  Identities=27%  Similarity=0.659  Sum_probs=36.6

Q ss_pred             CeeccccccccccCceecc---CCCcchHHhHHhcC-------CCCCCCCCccc
Q 016258           89 PLSCMICQALLFECSKCTP---CSHVYCKACISRFK-------DCPLCGADIEK  132 (392)
Q Consensus        89 ~~~C~iC~~~~~~~p~~~~---C~h~fC~~Ci~~~~-------~CP~C~~~~~~  132 (392)
                      -+.|.||.+...+..+.-|   ||-+.|..|....|       .||.|+.++.+
T Consensus        80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs  133 (140)
T PF05290_consen   80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS  133 (140)
T ss_pred             ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence            4889999999886666665   99999999998865       49999987765

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.66  E-value=0.34  Score=47.52  Aligned_cols=32  Identities=41%  Similarity=1.048  Sum_probs=26.5

Q ss_pred             Ceecccccccccc--CceeccCCCcchHHhHHhc
Q 016258           89 PLSCMICQALLFE--CSKCTPCSHVYCKACISRF  120 (392)
Q Consensus        89 ~~~C~iC~~~~~~--~p~~~~C~h~fC~~Ci~~~  120 (392)
                      -+.|.||.+...-  .-+-+||+|.||+.|+..+
T Consensus       184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY  217 (445)
T KOG1814|consen  184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDY  217 (445)
T ss_pred             cccceeeehhhcCcceeeecccchHHHHHHHHHH
Confidence            5889999987441  3678899999999999887

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=89.60  E-value=6.3  Score=43.01  Aligned_cols=138  Identities=11%  Similarity=0.052  Sum_probs=91.6

Q ss_pred             HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258          192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  271 (392)
Q Consensus       192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~  271 (392)
                      .+...|+.++|...+..+..       ..+       .....+..++...+..|++..|+.++++....    .+.....
T Consensus        24 ia~~~g~~~~A~~~~~~~~~-------~~~-------~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~----~P~~~~a   85 (765)
T PRK10049         24 IALWAGQDAEVITVYNRYRV-------HMQ-------LPARGYAAVAVAYRNLKQWQNSLTLWQKALSL----EPQNDDY   85 (765)
T ss_pred             HHHHcCCHHHHHHHHHHHHh-------hCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHH
Confidence            66778888888766542211       001       11223556677777888888888888776433    3444433


Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                             ...++.++...|++++|+..+++.++.       .+++       +. +..+|.++...|++++|+..|++++
T Consensus        86 -------~~~la~~l~~~g~~~eA~~~l~~~l~~-------~P~~-------~~-~~~la~~l~~~g~~~~Al~~l~~al  143 (765)
T PRK10049         86 -------QRGLILTLADAGQYDEALVKAKQLVSG-------APDK-------AN-LLALAYVYKRAGRHWDELRAMTQAL  143 (765)
T ss_pred             -------HHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC-------HH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                   346777777889999998888877744       4442       33 5668889999999999998888777


Q ss_pred             HHHHHhhcCCCchHHHHHHHHHHH
Q 016258          352 KRLESLTLKPEEAGLEQRRLSVLE  375 (392)
Q Consensus       352 ~i~e~l~~~p~~a~~l~~~~~~~~  375 (392)
                      ++      +|++..+...++.++.
T Consensus       144 ~~------~P~~~~~~~~la~~l~  161 (765)
T PRK10049        144 PR------APQTQQYPTEYVQALR  161 (765)
T ss_pred             Hh------CCCCHHHHHHHHHHHH
Confidence            63      5676666666666554

>TIGR00540 hemY_coli hemY protein

Probab=89.49  E-value=1.3  Score=44.48  Aligned_cols=66  Identities=18%  Similarity=0.191  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHH--HHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258          278 SLNKIGDLKYYGGDLQAARSYYVR--SLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  355 (392)
Q Consensus       278 ~~~~lg~l~~~~g~l~~A~~~ye~--sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e  355 (392)
                      .+..+|.++...|++++|+++|++  +++.       .+.        .....++|.++..+|+.++|.++|++++..+-
T Consensus       337 ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-------~p~--------~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~  401 (409)
T TIGR00540       337 INRALGQLLMKHGEFIEAADAFKNVAACKE-------QLD--------ANDLAMAADAFDQAGDKAEAAAMRQDSLGLML  401 (409)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHhHHhhc-------CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            355679999999999999999995  4433       222        11245899999999999999999999998887


Q ss_pred             Hhh
Q 016258          356 SLT  358 (392)
Q Consensus       356 ~l~  358 (392)
                      .+.
T Consensus       402 ~~~  404 (409)
T TIGR00540       402 AIQ  404 (409)
T ss_pred             ccc
Confidence            763

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=89.42  E-value=0.15  Score=54.34  Aligned_cols=39  Identities=33%  Similarity=0.738  Sum_probs=33.8

Q ss_pred             eeccccccccccCceeccCCCcchHHhHHhcC------CCCCCCCCc
Q 016258           90 LSCMICQALLFECSKCTPCSHVYCKACISRFK------DCPLCGADI  130 (392)
Q Consensus        90 ~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~  130 (392)
                      +.|.+|.+ .. .++.+.|+|.||..|+...+      .||.|+..+
T Consensus       455 ~~c~ic~~-~~-~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l  499 (674)
T KOG1001|consen  455 HWCHICCD-LD-SFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL  499 (674)
T ss_pred             cccccccc-cc-cceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence            79999999 45 99999999999999998874      399998644

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=89.41  E-value=19  Score=33.97  Aligned_cols=108  Identities=17%  Similarity=0.154  Sum_probs=76.4

Q ss_pred             hhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHHhhcCCCCCcchh
Q 016258          243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGG-DLQAARSYYVRSLNVRRDAVKRHSNVPSQVL  321 (392)
Q Consensus       243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g-~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~  321 (392)
                      ..|++.-|..++.++.....   ...++....|+...-++|.-....+ +++.|...+++++++.....+.........-
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~---~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e   81 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLN---SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE   81 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHh---cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence            57888889989888877765   3345667889999999999999999 9999999999999987653222222222211


Q ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      =....|.-|+.++...+..+    .+++++.+++.+
T Consensus        82 lr~~iL~~La~~~l~~~~~~----~~~ka~~~l~~l  113 (278)
T PF08631_consen   82 LRLSILRLLANAYLEWDTYE----SVEKALNALRLL  113 (278)
T ss_pred             HHHHHHHHHHHHHHcCCChH----HHHHHHHHHHHH
Confidence            23345667888888777653    445566666666

It is also involved in sporulation [].

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=89.22  E-value=3.7  Score=33.76  Aligned_cols=96  Identities=14%  Similarity=0.107  Sum_probs=62.7

Q ss_pred             hhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 016258          238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP  317 (392)
Q Consensus       238 c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~  317 (392)
                      ......+|++.+|+++|+++...  -|.+.      .....+=.++..+..+|++++|+..+++.+..       .+...
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~--gL~~~------~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-------~p~~~   72 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAA--GLSGA------DRRRALIQLASTLRNLGRYDEALALLEEALEE-------FPDDE   72 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHc--CCCch------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------CCCcc
Confidence            33445678899999999988542  23221      11234557888999999999999998877632       22210


Q ss_pred             cchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258          318 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  352 (392)
Q Consensus       318 ~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~  352 (392)
                       .  . ...-..++.+...+|+.++|+..+-+++.
T Consensus        73 -~--~-~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   73 -L--N-AALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             -c--c-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             0  0 11112467788899999999988766654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=89.22  E-value=2.2  Score=35.90  Aligned_cols=84  Identities=14%  Similarity=0.135  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      +.=.++.++...|++++|+..|++.++..       ++  ..+..++  .-+|+.++..+|++++|+..++.       +
T Consensus        50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-------~d--~~l~~~a--~l~LA~~~~~~~~~d~Al~~L~~-------~  111 (145)
T PF09976_consen   50 AALQLAKAAYEQGDYDEAKAALEKALANA-------PD--PELKPLA--RLRLARILLQQGQYDEALATLQQ-------I  111 (145)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-------CC--HHHHHHH--HHHHHHHHHHcCCHHHHHHHHHh-------c
Confidence            34457888889999999999999988632       11  0111222  33688999999999888876633       4


Q ss_pred             hcCCCchHHHHHHHHHHHHHHH
Q 016258          358 TLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       358 ~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      ...+-.+.....++.++...|+
T Consensus       112 ~~~~~~~~~~~~~Gdi~~~~g~  133 (145)
T PF09976_consen  112 PDEAFKALAAELLGDIYLAQGD  133 (145)
T ss_pred             cCcchHHHHHHHHHHHHHHCCC
Confidence            3334444555666777666554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=89.07  E-value=9.6  Score=41.72  Aligned_cols=136  Identities=18%  Similarity=0.210  Sum_probs=89.6

Q ss_pred             HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258          192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  271 (392)
Q Consensus       192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~  271 (392)
                      +....|++.+|...|+.-++...              +.-..+-+++.+|..+|.+..|+..|+......  ......+ 
T Consensus       655 VLA~kg~~~~A~dIFsqVrEa~~--------------~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf--~~~~~~~-  717 (1018)
T KOG2002|consen  655 VLAEKGRFSEARDIFSQVREATS--------------DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKF--YKKNRSE-  717 (1018)
T ss_pred             hhhhccCchHHHHHHHHHHHHHh--------------hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHh--cccCCHH-
Confidence            44455666666666654433222              011245567788888899999999998764332  2334444 


Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhc-----CCHHHHHHH
Q 016258          272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSI-----GNEDVAVDG  346 (392)
Q Consensus       272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~-----g~~~~A~~~  346 (392)
                            .+.-|+..++..|.|++|+.....++       ...+.+....+.++..+-+++....+.     .+...|+..
T Consensus       718 ------vl~~Lara~y~~~~~~eak~~ll~a~-------~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~  784 (1018)
T KOG2002|consen  718 ------VLHYLARAWYEAGKLQEAKEALLKAR-------HLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKE  784 (1018)
T ss_pred             ------HHHHHHHHHHHhhhHHHHHHHHHHHH-------HhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence                  45666777777777777777555544       446777778889988888888644433     444677888


Q ss_pred             HHHHHHHHHHh
Q 016258          347 FQEAIKRLESL  357 (392)
Q Consensus       347 ~~eal~i~e~l  357 (392)
                      ++.+.++.+.+
T Consensus       785 le~a~r~F~~l  795 (1018)
T KOG2002|consen  785 LEEARRLFTEL  795 (1018)
T ss_pred             HHHHHHHHHHH
Confidence            88888998888

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=88.93  E-value=0.52  Score=45.11  Aligned_cols=60  Identities=22%  Similarity=0.480  Sum_probs=43.4

Q ss_pred             cCCCeeccccccccccCceeccCCCcchHHhHHhc-CCCCCCCCCcccchhhhHHHHHHHHH
Q 016258           86 KIGPLSCMICQALLFECSKCTPCSHVYCKACISRF-KDCPLCGADIEKIEADTTLQDVVDRF  146 (392)
Q Consensus        86 ~~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-~~CP~C~~~~~~~~~n~~l~~~v~~~  146 (392)
                      ..+-+.||||...+..+..+=.=||.-|..|-... ..||.|+.++..+ .++.+..+++..
T Consensus        45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~~-R~~amEkV~e~~  105 (299)
T KOG3002|consen   45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGNI-RCRAMEKVAEAV  105 (299)
T ss_pred             chhhccCchhhccCcccceecCCCcEehhhhhhhhcccCCccccccccH-HHHHHHHHHHhc
Confidence            34679999999998844444455899999999555 6799999988854 445555554443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=88.76  E-value=1.3  Score=45.04  Aligned_cols=90  Identities=16%  Similarity=0.268  Sum_probs=63.1

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHH--------------------HHHhhcCCCCCcchhhHHHHHHHHHHHHHhcC
Q 016258          279 LNKIGDLKYYGGDLQAARSYYVRSLNVR--------------------RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG  338 (392)
Q Consensus       279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~--------------------~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g  338 (392)
                      +..-|+.....|+++.|+..|.+++.+-                    ..++......+..-.+++..++.+|.....+|
T Consensus         5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg   84 (539)
T KOG0548|consen    5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG   84 (539)
T ss_pred             HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence            3444566666778888888777777632                    11222222222233477888899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 016258          339 NEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVL  374 (392)
Q Consensus       339 ~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~  374 (392)
                      +|++|+..|.+.|+      .+|.+..+..++...+
T Consensus        85 ~~~eA~~ay~~GL~------~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   85 DYEEAILAYSEGLE------KDPSNKQLKTGLAQAY  114 (539)
T ss_pred             cHHHHHHHHHHHhh------cCCchHHHHHhHHHhh
Confidence            99999999988764      5788888888888877

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=88.52  E-value=16  Score=32.78  Aligned_cols=166  Identities=18%  Similarity=0.145  Sum_probs=84.5

Q ss_pred             hhHHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCC
Q 016258          187 VQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM  266 (392)
Q Consensus       187 ~c~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~  266 (392)
                      ...+...+..|++..|...|..-.       ...+...    .-...+.+++..++..|++..|+..++.....    .+
T Consensus         9 Y~~a~~~~~~g~y~~Ai~~f~~l~-------~~~P~s~----~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~----yP   73 (203)
T PF13525_consen    9 YQKALEALQQGDYEEAIKLFEKLI-------DRYPNSP----YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL----YP   73 (203)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHH-------HH-TTST----THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----T
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHH-------HHCCCCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CC
Confidence            344568899999999998885221       1111111    11234567788888999998888877665433    22


Q ss_pred             CChhHHHHHHHHHHHHHHHHH-----------hccCHHHHHHHHHHHHHHHHHHhhcCCCCCcc------hhhHHHHH--
Q 016258          267 DDLEIIHTLSVSLNKIGDLKY-----------YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ------VLDVAVSL--  327 (392)
Q Consensus       267 ~~~e~~~~ls~~~~~lg~l~~-----------~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~------~~dla~sl--  327 (392)
                      ..+.    +..++-.+|....           ..+...+|+..|+..       ..+.|+..-.      +..+...|  
T Consensus        74 ~~~~----~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l-------i~~yP~S~y~~~A~~~l~~l~~~la~  142 (203)
T PF13525_consen   74 NSPK----ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEEL-------IKRYPNSEYAEEAKKRLAELRNRLAE  142 (203)
T ss_dssp             T-TT----HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH-------HHH-TTSTTHHHHHHHHHHHHHHHHH
T ss_pred             CCcc----hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHH-------HHHCcCchHHHHHHHHHHHHHHHHHH
Confidence            2222    1223333333322           222334444444444       4444443211      11222222  


Q ss_pred             --HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 016258          328 --AKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQL  381 (392)
Q Consensus       328 --~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~  381 (392)
                        -.+|..|...|.+..|+..|+..++-.-..   +.....+..+...+..||...
T Consensus       143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t---~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDT---PAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTS---HHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCC---chHHHHHHHHHHHHHHhCChH
Confidence              247788999999999998877655433222   222334566677777776554

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=88.22  E-value=0.41  Score=32.56  Aligned_cols=39  Identities=26%  Similarity=0.624  Sum_probs=17.4

Q ss_pred             cccccccccc-Cceec--cCCCcchHHhHHhcC-----CCCCCCCCc
Q 016258           92 CMICQALLFE-CSKCT--PCSHVYCKACISRFK-----DCPLCGADI  130 (392)
Q Consensus        92 C~iC~~~~~~-~p~~~--~C~h~fC~~Ci~~~~-----~CP~C~~~~  130 (392)
                      ||+|.+.+-. +....  +|+..+|..|+.+..     .||-||.++
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            6777776621 22333  578888999987764     499999865

>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events []

Probab=88.16  E-value=7.8  Score=38.64  Aligned_cols=110  Identities=15%  Similarity=0.113  Sum_probs=82.1

Q ss_pred             HhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHH
Q 016258          262 MKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNED  341 (392)
Q Consensus       262 ~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~  341 (392)
                      .+|-....+++..-..++.-+.++-..+..|+-|+.....++...+++.           -+..++..|..+... ++|.
T Consensus        67 ~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~-----------MLv~a~~qL~~~~~~-r~Y~  134 (383)
T PF04100_consen   67 QELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQ-----------MLVTAVEQLKELAKK-RQYK  134 (383)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHc-CCHH
Confidence            3444444556666667777777777777888888888888888776653           455566666665554 8999


Q ss_pred             HHHHHHHHHHHHHHHh---hcCCCchHHHHHHHHHHHHHHHHhhc
Q 016258          342 VAVDGFQEAIKRLESL---TLKPEEAGLEQRRLSVLEFLNNQLSE  383 (392)
Q Consensus       342 ~A~~~~~eal~i~e~l---~~~p~~a~~l~~~~~~~~~l~~~~~~  383 (392)
                      ++...++....+++..   ..-|.++.+..++..+...|..++-+
T Consensus       135 e~a~~L~av~~L~~~F~~yksi~~I~~L~~~i~~l~~~L~~qI~~  179 (383)
T PF04100_consen  135 EIASLLQAVKELLEHFKPYKSIPQIAELSKRIDQLQNELKEQIFE  179 (383)
T ss_pred             HHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999887   55688888899999888888876543

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.08  E-value=4.4  Score=30.56  Aligned_cols=39  Identities=23%  Similarity=0.095  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCC
Q 016258          324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPE  362 (392)
Q Consensus       324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~  362 (392)
                      |..+-+.|.-....|++++|+.+|.+++..+..+ ...|+
T Consensus         6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d   45 (77)
T cd02683           6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKD   45 (77)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            4455566677777899999999999999999997 55554

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=88.05  E-value=3.3  Score=41.19  Aligned_cols=102  Identities=15%  Similarity=0.140  Sum_probs=69.3

Q ss_pred             HHHHHHHHHhhhh-hhhhhhcch-hHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 016258          226 LCSQLGAVLGMLG-DCCRAMGDA-DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSL  303 (392)
Q Consensus       226 ~C~~h~~~L~~~c-~~C~~~gdh-h~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL  303 (392)
                      .-+.-.+.|.+|| .+|.-.--- .+|..+++.++.       ..+.+.    .+...+.+|...-|.++.++...++.|
T Consensus       397 ~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~-------~~P~Y~----~AV~~~AEL~~~Eg~~~D~i~LLe~~L  465 (564)
T KOG1174|consen  397 LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK-------INPIYT----PAVNLIAELCQVEGPTKDIIKLLEKHL  465 (564)
T ss_pred             HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc-------cCCccH----HHHHHHHHHHHhhCccchHHHHHHHHH
Confidence            4555567788887 566211111 556656554432       122332    367788999988899999999999888


Q ss_pred             HHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          304 NVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       304 ~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                      .+.-              | .+-.++||++......+++|.++|..|+.+
T Consensus       466 ~~~~--------------D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  466 IIFP--------------D-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             hhcc--------------c-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            6532              2 224568999999999999999999887753

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=88.00  E-value=6  Score=28.80  Aligned_cols=39  Identities=28%  Similarity=0.281  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCC
Q 016258          323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKP  361 (392)
Q Consensus       323 la~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p  361 (392)
                      -|..+.+.|.-....|++++|+.+|.+++..+... ...+
T Consensus         4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~   43 (69)
T PF04212_consen    4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSES   43 (69)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence            35556667777777899999999999999999998 4333

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=87.89  E-value=1.7  Score=41.90  Aligned_cols=97  Identities=15%  Similarity=0.151  Sum_probs=71.5

Q ss_pred             hhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCC
Q 016258          235 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS  314 (392)
Q Consensus       235 ~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~  314 (392)
                      .++|-+|.-.+.++-+.+.++.++....+        ....++.+-|||.+.-.+|++.-|...|+=+|.       .+.
T Consensus       362 ~NigLCC~yaqQ~D~~L~sf~RAlstat~--------~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~-------~d~  426 (478)
T KOG1129|consen  362 CNIGLCCLYAQQIDLVLPSFQRALSTATQ--------PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT-------SDA  426 (478)
T ss_pred             hhHHHHHHhhcchhhhHHHHHHHHhhccC--------cchhhhhhhccceeEEeccchHHHHHHHHHHhc-------cCc
Confidence            34445786667778888888777544332        122456788999999899999999988876652       222


Q ss_pred             CCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          315 NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       315 ~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                             +.+.+|+|||.+..+-|+...|..+|+-|-..
T Consensus       427 -------~h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  427 -------QHGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             -------chHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence                   34778999999999999999999988776543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.64  E-value=12  Score=35.14  Aligned_cols=87  Identities=16%  Similarity=0.150  Sum_probs=53.0

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 016258          281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK  360 (392)
Q Consensus       281 ~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~  360 (392)
                      .++.+.+..-..--....|.=++.+..++.+..++..      -.-+..|+.+..+.|+.+.|..+|+...+.-..|.+.
T Consensus       175 Rl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~------p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~  248 (366)
T KOG2796|consen  175 RLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQE------PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL  248 (366)
T ss_pred             HHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCccc------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc
Confidence            3344443333333445566667777777766665532      2345678999999999999999999777666655333


Q ss_pred             CCchHHHHHHHHH
Q 016258          361 PEEAGLEQRRLSV  373 (392)
Q Consensus       361 p~~a~~l~~~~~~  373 (392)
                      ...-.+.++.+++
T Consensus       249 q~~~~V~~n~a~i  261 (366)
T KOG2796|consen  249 QGKIMVLMNSAFL  261 (366)
T ss_pred             chhHHHHhhhhhh
Confidence            3333334444433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=87.42  E-value=5.6  Score=37.05  Aligned_cols=116  Identities=20%  Similarity=0.169  Sum_probs=78.5

Q ss_pred             HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258          192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  271 (392)
Q Consensus       192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~  271 (392)
                      -+++.|++..|.+.+...       ....+++       .+.+..+|.+|-..|+...|...|.++.+.    .+..+  
T Consensus       109 ~~~~~g~~~~A~~~~rkA-------~~l~p~d-------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L----~~~~p--  168 (257)
T COG5010         109 NQIRNGNFGEAVSVLRKA-------ARLAPTD-------WEAWNLLGAALDQLGRFDEARRAYRQALEL----APNEP--  168 (257)
T ss_pred             HHHHhcchHHHHHHHHHH-------hccCCCC-------hhhhhHHHHHHHHccChhHHHHHHHHHHHh----ccCCc--
Confidence            567788888887766422       2222222       345566777777788888887777766443    33333  


Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHH
Q 016258          272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG  346 (392)
Q Consensus       272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~  346 (392)
                           ...+|||-++.-.|+++.|..++..+...       ...      + .....+|+.++..+|++..|...
T Consensus       169 -----~~~nNlgms~~L~gd~~~A~~lll~a~l~-------~~a------d-~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         169 -----SIANNLGMSLLLRGDLEDAETLLLPAYLS-------PAA------D-SRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             -----hhhhhHHHHHHHcCCHHHHHHHHHHHHhC-------CCC------c-hHHHHHHHHHHhhcCChHHHHhh
Confidence                 26899999999999999999988776532       111      1 22457899999999998888753

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=87.37  E-value=9  Score=38.26  Aligned_cols=62  Identities=19%  Similarity=0.191  Sum_probs=49.9

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258          279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  355 (392)
Q Consensus       279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e  355 (392)
                      .--+|.+....+++++|+.+|++++++.       +.        ....-.++.+++.+|+.++|..+|++++.+..
T Consensus       331 ~l~lgrl~~~~~~~~~A~~~le~al~~~-------P~--------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~  392 (398)
T PRK10747        331 WSTLGQLLMKHGEWQEASLAFRAALKQR-------PD--------AYDYAWLADALDRLHKPEEAAAMRRDGLMLTL  392 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            4456888889999999999999999752       22        12344699999999999999999999988653

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=87.27  E-value=4.1  Score=28.93  Aligned_cols=60  Identities=22%  Similarity=0.221  Sum_probs=38.1

Q ss_pred             hccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchHH
Q 016258          288 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGL  366 (392)
Q Consensus       288 ~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~a~~  366 (392)
                      ..|++++|+..|++.+..       .+.+       ....-.++.++...|++++|...       ++++ ..+|++..+
T Consensus         3 ~~~~~~~A~~~~~~~l~~-------~p~~-------~~~~~~la~~~~~~g~~~~A~~~-------l~~~~~~~~~~~~~   61 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQR-------NPDN-------PEARLLLAQCYLKQGQYDEAEEL-------LERLLKQDPDNPEY   61 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHH-------TTTS-------HHHHHHHHHHHHHTT-HHHHHHH-------HHCCHGGGTTHHHH
T ss_pred             hccCHHHHHHHHHHHHHH-------CCCC-------HHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCcCHHHH
Confidence            357777888877777644       4442       23445789999999998877654       4454 556665544


Q ss_pred             HH
Q 016258          367 EQ  368 (392)
Q Consensus       367 l~  368 (392)
                      ..
T Consensus        62 ~~   63 (68)
T PF14559_consen   62 QQ   63 (68)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=87.15  E-value=1.7  Score=30.84  Aligned_cols=45  Identities=18%  Similarity=0.146  Sum_probs=34.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          330 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       330 la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      +|..+...|++++|+..|++++      ..+|++......++.++..+|+.
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l------~~~P~~~~a~~~lg~~~~~~g~~   47 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQAL------KQDPDNPEAWYLLGRILYQQGRY   47 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHH------CCSTTHHHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHH------HHCCCCHHHHHHHHHHHHHcCCH
Confidence            5677888888887777666554      56799999999999999887764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=86.95  E-value=8.1  Score=42.17  Aligned_cols=124  Identities=13%  Similarity=0.048  Sum_probs=64.6

Q ss_pred             hhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH------Hh
Q 016258          237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD------AV  310 (392)
Q Consensus       237 ~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~------~~  310 (392)
                      ++..+...|+..+|+.++++...    ..+.....   .......|..++...|++++|+..+++.+...-.      ..
T Consensus       278 la~~yl~~g~~e~A~~~l~~~l~----~~p~~~~~---~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~  350 (765)
T PRK10049        278 VASAYLKLHQPEKAQSILTELFY----HPETIADL---SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSP  350 (765)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHhh----cCCCCCCC---ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCC
Confidence            45555566666777666655421    11111000   0123345555667779999999988887754210      00


Q ss_pred             hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258          311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~  378 (392)
                      ...++.     +-...+..++.++...|++++|+..|++++.      ..|++..++..++.++...|
T Consensus       351 ~~~p~~-----~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~------~~P~n~~l~~~lA~l~~~~g  407 (765)
T PRK10049        351 TSIPND-----DWLQGQSLLSQVAKYSNDLPQAEMRARELAY------NAPGNQGLRIDYASVLQARG  407 (765)
T ss_pred             CCCCCc-----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHhcC
Confidence            111110     1122344566677777777777766555443      24555555555555554443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=86.75  E-value=8.2  Score=33.99  Aligned_cols=95  Identities=21%  Similarity=0.156  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258          271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA  350 (392)
Q Consensus       271 ~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea  350 (392)
                      ....+......+|+.+...|++++|+..|.++.+--        -...   .+.+..-++-.+....+++..+..+..++
T Consensus        31 ~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~--------~~~~---~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   31 GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC--------TSPG---HKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc--------CCHH---HHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            456777899999999999999999999999866431        1111   22333334556666778999999998888


Q ss_pred             HHHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 016258          351 IKRLESLTLKPEEAGLEQRRLSVLEFLNNQL  381 (392)
Q Consensus       351 l~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~  381 (392)
                      ..+++.-    ++.. .++...+|.-|..+.
T Consensus       100 ~~~~~~~----~d~~-~~nrlk~~~gL~~l~  125 (177)
T PF10602_consen  100 ESLIEKG----GDWE-RRNRLKVYEGLANLA  125 (177)
T ss_pred             HHHHhcc----chHH-HHHHHHHHHHHHHHH
Confidence            8888763    2222 344455555555443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=86.70  E-value=0.25  Score=53.04  Aligned_cols=44  Identities=30%  Similarity=0.892  Sum_probs=35.1

Q ss_pred             CCeeccccccccc------cCceeccCCCcchHHhHHhcC------CCCCCCCCcc
Q 016258           88 GPLSCMICQALLF------ECSKCTPCSHVYCKACISRFK------DCPLCGADIE  131 (392)
Q Consensus        88 ~~~~C~iC~~~~~------~~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~~  131 (392)
                      +.-.|+||-.++.      ...++..|.|.|-.+|+-.|+      .||+||..++
T Consensus      1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            3567999988765      145677899999999999993      5999997654

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=86.63  E-value=0.6  Score=44.51  Aligned_cols=43  Identities=21%  Similarity=0.474  Sum_probs=33.2

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhc----CCCCCCCCCc
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADI  130 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~  130 (392)
                      +.-.||||+.--.++-++.--|-+||..||-.+    ..||+-+.+.
T Consensus       299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~  345 (357)
T KOG0826|consen  299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA  345 (357)
T ss_pred             ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence            467899999997745555556999999999887    4599876543

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=86.61  E-value=12  Score=28.95  Aligned_cols=82  Identities=16%  Similarity=0.168  Sum_probs=53.0

Q ss_pred             hhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhh
Q 016258          243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD  322 (392)
Q Consensus       243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~d  322 (392)
                      ..+|+..|+......-+....-....  ....+..++-+++.+....|.+++|+..+++++++.++..+..        -
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~~~--~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~--------~   79 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNNSS--SNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRR--------C   79 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccch--hhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHH--------H
Confidence            45666555554444433322211111  1345666788899999999999999999999999988764332        3


Q ss_pred             HHHHHHHHHHHH
Q 016258          323 VAVSLAKVADVD  334 (392)
Q Consensus       323 la~sl~~la~~~  334 (392)
                      ++-.+.|+..+.
T Consensus        80 l~~al~~~~~l~   91 (94)
T PF12862_consen   80 LAYALSWLANLL   91 (94)
T ss_pred             HHHHHHHHHHHh
Confidence            555666666554

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=86.58  E-value=21  Score=34.04  Aligned_cols=100  Identities=22%  Similarity=0.281  Sum_probs=68.8

Q ss_pred             HHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhc-c--CHHHHHHHHHHHH
Q 016258          227 CSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYG-G--DLQAARSYYVRSL  303 (392)
Q Consensus       227 C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~-g--~l~~A~~~ye~sL  303 (392)
                      -|.+.+.+-++|.++...++...|+..|..+    .+|.++++++...+       +++.+.. |  .-.++...|.++|
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A----~rL~g~n~~~~~g~-------aeaL~~~a~~~~ta~a~~ll~~al  220 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNA----LRLAGDNPEILLGL-------AEALYYQAGQQMTAKARALLRQAL  220 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHH----HHhCCCCHHHHHHH-------HHHHHHhcCCcccHHHHHHHHHHH
Confidence            3455678889999998899998887777655    46778888765443       3444333 2  5557777777766


Q ss_pred             HHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          304 NVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       304 ~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                      ..       ++.       -..++.-||..+...|+|.+|+..++.-+
T Consensus       221 ~~-------D~~-------~iral~lLA~~afe~g~~~~A~~~Wq~lL  254 (287)
T COG4235         221 AL-------DPA-------NIRALSLLAFAAFEQGDYAEAAAAWQMLL  254 (287)
T ss_pred             hc-------CCc-------cHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            33       333       24578889999999999888887655433

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.26  E-value=0.36  Score=49.83  Aligned_cols=40  Identities=28%  Similarity=0.605  Sum_probs=32.1

Q ss_pred             CCeecccccccccc---CceeccCCCcchHHhHHhcC--CCCCCCC
Q 016258           88 GPLSCMICQALLFE---CSKCTPCSHVYCKACISRFK--DCPLCGA  128 (392)
Q Consensus        88 ~~~~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~~~--~CP~C~~  128 (392)
                      +.+.|+||+..|..   .|+.+-|||+.|..|+....  .|| |..
T Consensus        10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~scp-~~~   54 (861)
T KOG3161|consen   10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNASCP-TKR   54 (861)
T ss_pred             HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhccCC-CCc
Confidence            35789999877764   48999999999999998763  599 544

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=86.18  E-value=4.4  Score=43.80  Aligned_cols=87  Identities=16%  Similarity=0.125  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258          276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  355 (392)
Q Consensus       276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e  355 (392)
                      ....-.|.+.+...|.+.+|+.+|-.....       ...      ..+..+-++|.+|..+|.++.|++.|+.++    
T Consensus       414 ~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-------~~~------~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl----  476 (895)
T KOG2076|consen  414 VDLYLDLADALTNIGKYKEALRLLSPITNR-------EGY------QNAFVWYKLARCYMELGEYEEAIEFYEKVL----  476 (895)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHhcC-------ccc------cchhhhHHHHHHHHHHhhHHHHHHHHHHHH----
Confidence            345667777888888888888888766532       221      113445678888888888888888888776    


Q ss_pred             HhhcCCCchHHHHHHHHHHHHHHHHh
Q 016258          356 SLTLKPEEAGLEQRRLSVLEFLNNQL  381 (392)
Q Consensus       356 ~l~~~p~~a~~l~~~~~~~~~l~~~~  381 (392)
                        ...|++.+.+-.|++++..+|+.-
T Consensus       477 --~~~p~~~D~Ri~Lasl~~~~g~~E  500 (895)
T KOG2076|consen  477 --ILAPDNLDARITLASLYQQLGNHE  500 (895)
T ss_pred             --hcCCCchhhhhhHHHHHHhcCCHH
Confidence              456888999999999999888753

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=86.17  E-value=10  Score=31.95  Aligned_cols=123  Identities=20%  Similarity=0.209  Sum_probs=83.4

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  312 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~  312 (392)
                      .|+.-+..-...|+...++..|.++....    +       .-..++|+-...+.-+|+-++|++.++++|++.-..   
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~----P-------~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~---  110 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCLA----P-------ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ---  110 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhc----c-------cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc---
Confidence            44444544435677788887777765432    1       122467888888888899999999999999763211   


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----Hh-hcCCCchHHHHHHHHHHHH
Q 016258          313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE-----SL-TLKPEEAGLEQRRLSVLEF  376 (392)
Q Consensus       313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e-----~l-~~~p~~a~~l~~~~~~~~~  376 (392)
                       +.      .-.-++-.-|.+|+.+|+.+.|..-|+.+-.+--     +| ...|..+.--++++..+..
T Consensus       111 -tr------tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa~~f~q  173 (175)
T KOG4555|consen  111 -TR------TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLADAFDQ  173 (175)
T ss_pred             -ch------HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHHHHHHh
Confidence             11      1233456788999999999999999988876533     33 6677777666666666554

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=86.11  E-value=9.8  Score=36.00  Aligned_cols=94  Identities=23%  Similarity=0.211  Sum_probs=67.1

Q ss_pred             HhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHh-hcCCCch
Q 016258          287 YYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG-NEDVAVDGFQEAIKRLESL-TLKPEEA  364 (392)
Q Consensus       287 ~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g-~~~~A~~~~~eal~i~e~l-~~~p~~a  364 (392)
                      ...|+++.|..+|.++-.+..      .-.+.....++..+-++|.-....+ +++.|+.++++|.++++.. ..+....
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~------~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~   77 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLN------SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSP   77 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHh------cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCC
Confidence            356899999999998876654      1123334567777888887777778 9999999999999999883 4344444


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCC
Q 016258          365 GLEQRRLSVLEFLNNQLSEKPP  386 (392)
Q Consensus       365 ~~l~~~~~~~~~l~~~~~~~~~  386 (392)
                      .......+++..|-+.+-+...
T Consensus        78 ~~~elr~~iL~~La~~~l~~~~   99 (278)
T PF08631_consen   78 DGSELRLSILRLLANAYLEWDT   99 (278)
T ss_pred             cHHHHHHHHHHHHHHHHHcCCC
Confidence            4555566777777766655443

It is also involved in sporulation [].

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=86.02  E-value=7.9  Score=38.20  Aligned_cols=62  Identities=23%  Similarity=0.201  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258          278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  354 (392)
Q Consensus       278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~  354 (392)
                      .+.-||-++...+.+.+|..+|+.++..+..               +...+.+|+++..+|+.+.|...+++++.+.
T Consensus       330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s---------------~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~  391 (400)
T COG3071         330 LLSTLGRLALKNKLWGKASEALEAALKLRPS---------------ASDYAELADALDQLGEPEEAEQVRREALLLT  391 (400)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC---------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            3445688888889999999999987754332               4467899999999999999999999999443

>smart00028 TPR Tetratricopeptide repeats

Probab=85.81  E-value=1.1  Score=25.54  Aligned_cols=28  Identities=18%  Similarity=0.361  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          326 SLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       326 sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                      .+.++|.++..+|+++.|+..|++++++
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            4568899999999999999999988865

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=85.74  E-value=5.1  Score=38.77  Aligned_cols=82  Identities=16%  Similarity=0.065  Sum_probs=59.7

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258          279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT  358 (392)
Q Consensus       279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~  358 (392)
                      .+.||..+..+|-+..|...++.+|+..               .+.+++--|+.+|..+.+-+.|+..|.+.      |.
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q~---------------~~~dTfllLskvY~ridQP~~AL~~~~~g------ld  284 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQF---------------PHPDTFLLLSKVYQRIDQPERALLVIGEG------LD  284 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhcC---------------CchhHHHHHHHHHHHhccHHHHHHHHhhh------hh
Confidence            4678999999999999999999988642               12445666777788777777777554443      34


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHh
Q 016258          359 LKPEEAGLEQRRLSVLEFLNNQL  381 (392)
Q Consensus       359 ~~p~~a~~l~~~~~~~~~l~~~~  381 (392)
                      ..|.+..++-..+.|++.|++|-
T Consensus       285 ~fP~~VT~l~g~ARi~eam~~~~  307 (478)
T KOG1129|consen  285 SFPFDVTYLLGQARIHEAMEQQE  307 (478)
T ss_pred             cCCchhhhhhhhHHHHHHHHhHH
Confidence            56777777777788877777664

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=85.57  E-value=3  Score=42.06  Aligned_cols=71  Identities=15%  Similarity=0.061  Sum_probs=56.0

Q ss_pred             HHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258          227 CSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV  305 (392)
Q Consensus       227 C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i  305 (392)
                      -|.+...+..+|..++.+|++.+|+..++.+.+.    .+...+    .+.++.+++..+..+|++++|+..|++++++
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL----~Pd~ae----A~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL----NPNPDE----AQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCchH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3455566677888888999999999999887654    333332    2246899999999999999999999999996

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=85.55  E-value=20  Score=33.17  Aligned_cols=61  Identities=11%  Similarity=-0.083  Sum_probs=43.0

Q ss_pred             hhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258          237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV  305 (392)
Q Consensus       237 ~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i  305 (392)
                      -+......|++..|+..++....    ..+..+    ....+.-.++..++..+++++|+..|++.++.
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~----~yP~s~----~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~   98 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDN----RYPFGP----YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL   98 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH----hCCCCh----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            44455567888888888776533    222222    23345678999999999999999999988854

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=85.53  E-value=0.44  Score=40.76  Aligned_cols=21  Identities=24%  Similarity=0.434  Sum_probs=16.7

Q ss_pred             CCeeccccccccccCceeccCC
Q 016258           88 GPLSCMICQALLFECSKCTPCS  109 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~  109 (392)
                      ++..||||++... +.|+|-|.
T Consensus         1 ed~~CpICme~PH-NAVLLlCS   21 (162)
T PF07800_consen    1 EDVTCPICMEHPH-NAVLLLCS   21 (162)
T ss_pred             CCccCceeccCCC-ceEEEEec
Confidence            3578999999988 77877654

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=85.47  E-value=0.77  Score=31.39  Aligned_cols=37  Identities=24%  Similarity=0.648  Sum_probs=27.6

Q ss_pred             eccccccc-cccCceeccCC-----CcchHHhHHhcC------CCCCCC
Q 016258           91 SCMICQAL-LFECSKCTPCS-----HVYCKACISRFK------DCPLCG  127 (392)
Q Consensus        91 ~C~iC~~~-~~~~p~~~~C~-----h~fC~~Ci~~~~------~CP~C~  127 (392)
                      .|.||++. -.+.+...||.     |.+=..|+.+|.      .||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            48899972 12368889985     667789999993      499985

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=85.22  E-value=20  Score=29.66  Aligned_cols=79  Identities=18%  Similarity=0.166  Sum_probs=58.7

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCc-chhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS-QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~-~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      ...+++.....+++-.++-.|+++|.+.++.......... .+.--+.+--|||+.|+.+|+-+-.+.|++=|=+....|
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            3456677777788889999999999998887433332222 222223356689999999999999999998888877777

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=84.99  E-value=18  Score=40.04  Aligned_cols=131  Identities=11%  Similarity=0.113  Sum_probs=75.5

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-----
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR-----  307 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~-----  307 (392)
                      .|.-++.++..+|++.++..++++..+.-    ..+.       .++|+++..+... ++++|+.+|.+++...-     
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D----~~n~-------~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~  185 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKAD----RDNP-------EIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQY  185 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcC----cccH-------HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcc
Confidence            34445566667888899998888775543    4444       3688888888888 99999999999998531     


Q ss_pred             --------HHhhcCCCCCcchhhHHHHHH------HHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchHHHHHHHH
Q 016258          308 --------DAVKRHSNVPSQVLDVAVSLA------KVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRRLS  372 (392)
Q Consensus       308 --------~~~~~~~~~~~~~~dla~sl~------~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~a~~l~~~~~  372 (392)
                              ....-.++...-+..+-..+-      ++.+++.-+=++=...+-|.+++.+++.+ +.+|.+.-.+..++.
T Consensus       186 ~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~  265 (906)
T PRK14720        186 VGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIR  265 (906)
T ss_pred             hHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHH
Confidence                    122223333322221111111      11122211112223334456677777777 666776666666666


Q ss_pred             HHH
Q 016258          373 VLE  375 (392)
Q Consensus       373 ~~~  375 (392)
                      .|-
T Consensus       266 ~y~  268 (906)
T PRK14720        266 FYK  268 (906)
T ss_pred             HHH
Confidence            554

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.46  E-value=12  Score=28.17  Aligned_cols=36  Identities=28%  Similarity=0.150  Sum_probs=30.3

Q ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      ..|..+...|.-....|+|++|+.+|+++++.+...
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~   39 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYA   39 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence            345667777777778899999999999999999884

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=83.97  E-value=1  Score=42.25  Aligned_cols=42  Identities=26%  Similarity=0.706  Sum_probs=29.4

Q ss_pred             eccccccccccCc----eeccCCCcchHHhHHhcC-----CCCCCCCCccc
Q 016258           91 SCMICQALLFECS----KCTPCSHVYCKACISRFK-----DCPLCGADIEK  132 (392)
Q Consensus        91 ~C~iC~~~~~~~p----~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~  132 (392)
                      .||+|.---.-.|    .+-+|+|..|.+|+...+     .||.|...+..
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk   52 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK   52 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence            3777765222122    233899999999998874     49999887655

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.86  E-value=6.5  Score=36.89  Aligned_cols=92  Identities=23%  Similarity=0.263  Sum_probs=62.4

Q ss_pred             hhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchh
Q 016258          242 RAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL  321 (392)
Q Consensus       242 ~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~  321 (392)
                      +..|++..|...|....   ..- +...    ....+.-.||+.++.+|+++.|...|...++       +.+...    
T Consensus       152 ~ksgdy~~A~~~F~~fi---~~Y-P~s~----~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k-------~~P~s~----  212 (262)
T COG1729         152 YKSGDYAEAEQAFQAFI---KKY-PNST----YTPNAYYWLGESLYAQGDYEDAAYIFARVVK-------DYPKSP----  212 (262)
T ss_pred             HHcCCHHHHHHHHHHHH---HcC-CCCc----ccchhHHHHHHHHHhcccchHHHHHHHHHHH-------hCCCCC----
Confidence            35677666665554432   222 2222    2345778899999999999999999988775       233221    


Q ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258          322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  352 (392)
Q Consensus       322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~  352 (392)
                      -.-+.|=+||.+...+|+.++|...|++.++
T Consensus       213 KApdallKlg~~~~~l~~~d~A~atl~qv~k  243 (262)
T COG1729         213 KAPDALLKLGVSLGRLGNTDEACATLQQVIK  243 (262)
T ss_pred             CChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            1135788999999999999988877666554

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.83  E-value=12  Score=27.67  Aligned_cols=39  Identities=28%  Similarity=0.265  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCC
Q 016258          324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPE  362 (392)
Q Consensus       324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~  362 (392)
                      |..+.+.|.-....|++++|+.+|.++++.+... ...++
T Consensus         6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~   45 (75)
T cd02656           6 AKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKE   45 (75)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence            4445556666667799999999999999999997 33443

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=83.59  E-value=0.5  Score=32.50  Aligned_cols=40  Identities=20%  Similarity=0.423  Sum_probs=20.2

Q ss_pred             eeccccccccccCceeccCCCcchHHhH---H-----hcCCCCCCCCC
Q 016258           90 LSCMICQALLFECSKCTPCSHVYCKACI---S-----RFKDCPLCGAD  129 (392)
Q Consensus        90 ~~C~iC~~~~~~~p~~~~C~h~fC~~Ci---~-----~~~~CP~C~~~  129 (392)
                      |.|||-...+..+.+...|.|.-|..=.   .     ..|.||.|+++
T Consensus         3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence            7899999988866777789998764321   1     12789999863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=83.52  E-value=12  Score=41.29  Aligned_cols=21  Identities=14%  Similarity=0.025  Sum_probs=9.8

Q ss_pred             HHHHHhccCHHHHHHHHHHHH
Q 016258          283 GDLKYYGGDLQAARSYYVRSL  303 (392)
Q Consensus       283 g~l~~~~g~l~~A~~~ye~sL  303 (392)
                      +.++...|++++|+..|++.+
T Consensus       109 A~ly~~~gdyd~Aiely~kaL  129 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSL  129 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHH
Confidence            334444455554444444443

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=83.03  E-value=0.85  Score=34.24  Aligned_cols=25  Identities=32%  Similarity=0.695  Sum_probs=21.5

Q ss_pred             cCCCcchHHhHHhcC----CCCCCCCCcc
Q 016258          107 PCSHVYCKACISRFK----DCPLCGADIE  131 (392)
Q Consensus       107 ~C~h~fC~~Ci~~~~----~CP~C~~~~~  131 (392)
                      -|.|.|=..||.+|.    .||++++++.
T Consensus        53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~   81 (88)
T COG5194          53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV   81 (88)
T ss_pred             ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence            499999999999994    5999998654

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.76  E-value=14  Score=27.44  Aligned_cols=39  Identities=23%  Similarity=0.271  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCC
Q 016258          324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPE  362 (392)
Q Consensus       324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~  362 (392)
                      |..|-+-|.-....|++++|+.+|.++++.+... ...|+
T Consensus         6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~   45 (75)
T cd02678           6 AIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKN   45 (75)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            3444455555666799999999999999999997 44443

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=82.54  E-value=0.33  Score=35.68  Aligned_cols=39  Identities=36%  Similarity=0.670  Sum_probs=22.6

Q ss_pred             CeeccccccccccCceeccCCCcchHHhHHhcC---CCCCCCCCccc
Q 016258           89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK---DCPLCGADIEK  132 (392)
Q Consensus        89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~---~CP~C~~~~~~  132 (392)
                      ++.||.|...|.-..     ++.+|..|-..+.   .||.|..++..
T Consensus         1 e~~CP~C~~~L~~~~-----~~~~C~~C~~~~~~~a~CPdC~~~Le~   42 (70)
T PF07191_consen    1 ENTCPKCQQELEWQG-----GHYHCEACQKDYKKEAFCPDCGQPLEV   42 (70)
T ss_dssp             --B-SSS-SBEEEET-----TEEEETTT--EEEEEEE-TTT-SB-EE
T ss_pred             CCcCCCCCCccEEeC-----CEEECccccccceecccCCCcccHHHH
Confidence            468999998866111     8889999998874   49999986654

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.53  E-value=0.69  Score=45.04  Aligned_cols=41  Identities=22%  Similarity=0.691  Sum_probs=29.5

Q ss_pred             eeccccccccccCc---eeccCCCcchHHhHHhcC-------CCCCCCCCc
Q 016258           90 LSCMICQALLFECS---KCTPCSHVYCKACISRFK-------DCPLCGADI  130 (392)
Q Consensus        90 ~~C~iC~~~~~~~p---~~~~C~h~fC~~Ci~~~~-------~CP~C~~~~  130 (392)
                      -.|.||.+.+....   .+-.|||.|=..|+.+|+       .||.|+-.+
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~   55 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL   55 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence            47999977644321   222499999999999993       499998443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=81.92  E-value=4.2  Score=42.25  Aligned_cols=91  Identities=12%  Similarity=0.129  Sum_probs=64.3

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258          279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT  358 (392)
Q Consensus       279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~  358 (392)
                      ..-++.+....|++++|...|++++++.       +       . +..+..+|.++...|+.++|++.|++|+.+-=...
T Consensus       423 ~~ala~~~~~~g~~~~A~~~l~rAl~L~-------p-------s-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        423 YEILAVQALVKGKTDEAYQAINKAIDLE-------M-------S-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcC-------C-------C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            3344556666799999999999999775       1       1 44678899999999999999999999875421110


Q ss_pred             --cCCCchHHHHHHHHHHHHHHHHhhcC
Q 016258          359 --LKPEEAGLEQRRLSVLEFLNNQLSEK  384 (392)
Q Consensus       359 --~~p~~a~~l~~~~~~~~~l~~~~~~~  384 (392)
                        -=-++..+..++..+..+|.+.+.+.
T Consensus       488 t~~~~~~~~f~~~~~~~~~~~~~~~~~~  515 (517)
T PRK10153        488 TLYWIENLVFQTSVETVVPYLYRFLAPS  515 (517)
T ss_pred             hHHHHHhccccccHHHHHHHHHhccCcc
Confidence              00123445667788888888877653

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=81.91  E-value=2.6  Score=25.12  Aligned_cols=27  Identities=33%  Similarity=0.458  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258          326 SLAKVADVDRSIGNEDVAVDGFQEAIK  352 (392)
Q Consensus       326 sl~~la~~~~~~g~~~~A~~~~~eal~  352 (392)
                      ++=++|.++..+|++++|+..|++.++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~   28 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIK   28 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            355789999999999999988887765

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=81.81  E-value=17  Score=26.88  Aligned_cols=39  Identities=21%  Similarity=0.209  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCC
Q 016258          324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPE  362 (392)
Q Consensus       324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~  362 (392)
                      |..+-..|.-....|++++|+.+|.++++.+... ...|+
T Consensus         8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~   47 (77)
T smart00745        8 AKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESD   47 (77)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence            3344445555666799999999999999999997 44444

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=81.72  E-value=4.6  Score=44.52  Aligned_cols=75  Identities=12%  Similarity=0.176  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---
Q 016258          277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR---  353 (392)
Q Consensus       277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i---  353 (392)
                      .++-.++..+..+|+.++|...|++.|+.-       ++       -+..|+++|-.|... ++++|+.++.+|+..   
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------~~-------n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~  181 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-------RD-------NPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK  181 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------cc-------cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence            366778888888899999999999998763       33       366789999999888 999999988777654   


Q ss_pred             ----------HHHh-hcCCCchHH
Q 016258          354 ----------LESL-TLKPEEAGL  366 (392)
Q Consensus       354 ----------~e~l-~~~p~~a~~  366 (392)
                                |+++ ...|++...
T Consensus       182 ~kq~~~~~e~W~k~~~~~~~d~d~  205 (906)
T PRK14720        182 KKQYVGIEEIWSKLVHYNSDDFDF  205 (906)
T ss_pred             hhcchHHHHHHHHHHhcCcccchH
Confidence                      4555 677777665

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=81.59  E-value=0.4  Score=35.64  Aligned_cols=42  Identities=24%  Similarity=0.605  Sum_probs=29.4

Q ss_pred             eeccccccccccCceec-cCCCcchHHhHHhcC-------CCCCCCCCcc
Q 016258           90 LSCMICQALLFECSKCT-PCSHVYCKACISRFK-------DCPLCGADIE  131 (392)
Q Consensus        90 ~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~-------~CP~C~~~~~  131 (392)
                      -.||-|.-.=-+.|.++ -|.|.|=..||..|.       .||.||+.+.
T Consensus        32 g~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   32 GCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             CcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            45666655433335544 499999999999994       3999998654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=81.28  E-value=3.6  Score=29.72  Aligned_cols=45  Identities=16%  Similarity=0.164  Sum_probs=33.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 016258          331 ADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQL  381 (392)
Q Consensus       331 a~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~  381 (392)
                      ..++...+++++|+..++.++.+      +|++..+...++.++..+|+.-
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~~a~~~~~~g~~~   46 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALEL------DPDDPELWLQRARCLFQLGRYE   46 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHh------CcccchhhHHHHHHHHHhccHH
Confidence            46777788888877766666554      7888888888888888877653

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=81.15  E-value=9.8  Score=34.39  Aligned_cols=34  Identities=29%  Similarity=0.334  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 016258          273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR  306 (392)
Q Consensus       273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~  306 (392)
                      ..-+..++.-|+-.+.-|+|.+|...|..+|++.
T Consensus        92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~c  125 (271)
T KOG4234|consen   92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESC  125 (271)
T ss_pred             HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhC
Confidence            4455677888888889999999999999999865

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=80.38  E-value=72  Score=32.54  Aligned_cols=100  Identities=17%  Similarity=0.100  Sum_probs=52.0

Q ss_pred             HhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcC
Q 016258          234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH  313 (392)
Q Consensus       234 L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~  313 (392)
                      +.+.+++....++.++|...++.+.    .+.+...-+       .-++++.+...|+.++|+.       +........
T Consensus       343 ~~~~~~i~~~~nk~~~A~e~~~kal----~l~P~~~~l-------~~~~a~all~~g~~~eai~-------~L~~~~~~~  404 (484)
T COG4783         343 LELAGDILLEANKAKEAIERLKKAL----ALDPNSPLL-------QLNLAQALLKGGKPQEAIR-------ILNRYLFND  404 (484)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHH----hcCCCccHH-------HHHHHHHHHhcCChHHHHH-------HHHHHhhcC
Confidence            4455666656777788877766553    333333323       3456667777777775554       444455566


Q ss_pred             CCCCcchhhHHHHHH----------HHHHHHHhcCCHHHHHHHHHHHH
Q 016258          314 SNVPSQVLDVAVSLA----------KVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       314 ~~~~~~~~dla~sl~----------~la~~~~~~g~~~~A~~~~~eal  351 (392)
                      ++++..-.-+|....          ..++.+...|++++|+.++..+.
T Consensus       405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~  452 (484)
T COG4783         405 PEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRAS  452 (484)
T ss_pred             CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            665433222222222          23334444455555555444433

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.18  E-value=1.2  Score=43.63  Aligned_cols=41  Identities=22%  Similarity=0.492  Sum_probs=32.3

Q ss_pred             Ceeccccccccc--cCceeccCCCcchHHhHHhc-------CCCCCCCCC
Q 016258           89 PLSCMICQALLF--ECSKCTPCSHVYCKACISRF-------KDCPLCGAD  129 (392)
Q Consensus        89 ~~~C~iC~~~~~--~~p~~~~C~h~fC~~Ci~~~-------~~CP~C~~~  129 (392)
                      .|.|||=.+...  ++|+.+.|||..|+.-+.+.       +.||.|...
T Consensus       334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e  383 (394)
T KOG2817|consen  334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE  383 (394)
T ss_pred             eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence            488997655433  37999999999999999876       359999753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	392
2h0d_A	97	Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquiti		3e-06
3rpg_B	117	Bmi1RING1B-Ubch5c Complex Structure Length = 117		4e-06
2ckl_A	108	Ring1b-Bmi1 E3 Catalytic Domain Structure Length =		4e-06

>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin Ligase Complex Length = 97

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
           L C++C     + +    C H +CK CI R+    K CP+C   + K      I +D TL
Sbjct: 12  LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 71
Query: 140 QDVVDRFIEG 149
           QD+V + + G
Sbjct: 72  QDIVYKLVPG 81

>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure Length = 117

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
           L C++C     + +    C H +CK CI R+    K CP+C   + K      I +D TL
Sbjct: 16  LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 75
Query: 140 QDVVDRFIEG 149
           QD+V + + G
Sbjct: 76  QDIVYKLVPG 85

>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure Length = 108

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK------IEADTTL 139
           L C++C     + +    C H +CK CI R+    K CP+C   + K      I +D TL
Sbjct: 16  LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 75
Query: 140 QDVVDRFIEG 149
           QD+V + + G
Sbjct: 76  QDIVYKLVPG 85

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	392
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	7e-14
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-10
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-09
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-05
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	1e-09
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-09
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-09
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	9e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	7e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	6e-09
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-08
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	9e-09
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-07
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	7e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	7e-06
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	1e-08
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	2e-08
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-08
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	3e-08
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	2e-07
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	2e-07
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	3e-07
1z6u_A	150	NP95-like ring finger protein isoform B; structura	3e-07
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	5e-07
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	5e-07
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	2e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	9e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	8e-06
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	5e-06
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	7e-06
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	9e-06
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	1e-05
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	1e-05
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	2e-05
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	3e-05
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	3e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	4e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-04
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	4e-05
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	4e-05
3nw0_A	238	Non-structural maintenance of chromosomes element	5e-05
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	9e-05
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	1e-04
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	2e-04
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	2e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-04
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	2e-04
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	2e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	3e-04
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	3e-04
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	4e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	5e-04
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	6e-04

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 66.4 bits (162), Expect = 7e-14
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 10/70 (14%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADI------EKIEADTTL 139
           L C++C     + +    C H +CK CI R+    K CP+C   +        I +D TL
Sbjct: 16  LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 75

Query: 140 QDVVDRFIEG 149
           QD+V + + G
Sbjct: 76  QDIVYKLVPG 85

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 10/88 (11%)

Query: 65  DSMDSASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRF---- 120
           DS+  +  PP               L C IC            CSH YC  CI +F    
Sbjct: 2   DSLAESRWPPGLAVMKTIDDL----LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK 57

Query: 121 KDCPLCGADIEK--IEADTTLQDVVDRF 146
             CP C   + +  ++ +  L ++V   
Sbjct: 58  TQCPTCCVTVTEPDLKNNRILDELVKSL 85

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 12/134 (8%)

Query: 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGG 290
                MLG     M   D A A F    +   K    D    H    +L+++G ++   G
Sbjct: 26  SGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHR---ALHQVGMVERMAG 80

Query: 291 DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350
           +  AAR  ++    +     +         L  + +  +VA V    G+   A   ++++
Sbjct: 81  NWDAARRCFLEERELLASLPEDP-------LAASANAYEVATVALHFGDLAGARQEYEKS 133

Query: 351 IKRLESLTLKPEEA 364
           +   +    +   A
Sbjct: 134 LVYAQQADDQVAIA 147

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 17/122 (13%), Positives = 42/122 (34%), Gaps = 20/122 (16%)

Query: 225 ELCSQLG-------AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSV 277
           EL + L        A    +       GD   A   +  S+ +  +   DD      ++ 
Sbjct: 94  ELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQ---VAIAC 148

Query: 278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSI 337
           +   +GDL     +L  A+ +++R+ ++  +              V   + ++  ++   
Sbjct: 149 AFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSE--------AVNELMTRLNGLEHHH 200

Query: 338 GN 339
            +
Sbjct: 201 HH 202

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 53.2 bits (128), Expect = 1e-09
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK 132
           + C IC+  L + +  T C H +CK+CI R       CP C   + +
Sbjct: 16  ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 54.7 bits (131), Expect = 2e-09
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADIEKIEADTTLQDVVDR 145
           L C+IC     E      C+H +C  CI+ +      CP+C  DI+       L + +++
Sbjct: 65  LQCIICSEYFIEAV-TLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINK 123

Query: 146 FIEGHARIKRSHTNSDKEEDEA 167
            +   +   +        E +A
Sbjct: 124 MVNNLSSEVKERRIVLIRERKA 145

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 15/131 (11%)

Query: 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQ 293
           L + G+     GD  A V++F  +      + +   E + TLS   +++G+  +Y  D  
Sbjct: 12  LALEGERLCKSGDCRAGVSFFEAA------VQVGT-EDLKTLSAIYSQLGNAYFYLHDYA 64

Query: 294 AARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353
            A  Y+   L + R    +           A +   + +  + +GN D A+   Q  +  
Sbjct: 65  KALEYHHHDLTLARTIGDQL--------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 116

Query: 354 LESLTLKPEEA 364
              L  K  EA
Sbjct: 117 SRELNDKVGEA 127

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 24/157 (15%), Positives = 53/157 (33%), Gaps = 17/157 (10%)

Query: 229 QLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYY 288
            L A+   LG+    + D   A+ Y    +     +  D L      + +   +G+    
Sbjct: 45  TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG-DQLGE----AKASGNLGNTLKV 99

Query: 289 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ 348
            G+   A     R L++ R+   +           A +L  + +V  + G          
Sbjct: 100 LGNFDEAIVCCQRHLDISRELNDKV--------GEARALYNLGNVYHAKGKSFGCPGPQD 151

Query: 349 EAIKRLESLTLKPEEAGLE--QRRLSVLEFLNNQLSE 383
                 E      + A ++  +  LS++  L ++ ++
Sbjct: 152 VGEFPEEVRD-ALQAA-VDFYEENLSLVTALGDRAAQ 186

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMD-DLEIIHTLSVSLNKIGDLKYYG 289
                 LG+    +G+ + A  Y+  +      L +   L+     + S   +G+     
Sbjct: 227 RRAYSNLGNAYIFLGEFETASEYYKKT------LLLARQLKDRAVEAQSCYSLGNTYTLL 280

Query: 290 GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349
            D + A  Y+++ L + ++   R             +   + +   ++GN D A+   ++
Sbjct: 281 QDYEKAIDYHLKHLAIAQELNDRI--------GEGRACWSLGNAYTALGNHDQAMHFAEK 332

Query: 350 AIKRLESLTLKPEEA 364
            ++    +  K  E 
Sbjct: 333 HLEISREVGDKSGEL 347

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 17/149 (11%), Positives = 44/149 (29%), Gaps = 23/149 (15%)

Query: 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD---------LEIIHTL------ 275
              L  LG+   A G +                              L ++  L      
Sbjct: 127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQ 186

Query: 276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDR 335
             +   +G+  Y  G+ + A   + + L + ++   +             + + + +   
Sbjct: 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA--------AERRAYSNLGNAYI 238

Query: 336 SIGNEDVAVDGFQEAIKRLESLTLKPEEA 364
            +G  + A + +++ +     L  +  EA
Sbjct: 239 FLGEFETASEYYKKTLLLARQLKDRAVEA 267

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 11/88 (12%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS 336
           + L   G+     GD +A  S++  ++ V  + +K           ++   +++ +    
Sbjct: 10  LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK----------TLSAIYSQLGNAYFY 59

Query: 337 IGNEDVAVDGFQEAIKRLESLTLKPEEA 364
           + +   A++     +    ++  +  EA
Sbjct: 60  LHDYAKALEYHHHDLTLARTIGDQLGEA 87

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 15/131 (11%)

Query: 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQ 293
           L + G+     GD  A VA+F  +++       +DL    TLS   +++G+  +Y GD  
Sbjct: 51  LALEGERLCNAGDCRAGVAFFQAAIQ--AGT--EDL---RTLSAIYSQLGNAYFYLGDYN 103

Query: 294 AARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353
            A  Y+   L + +    R           A S   + +  + +G  D A    +  +  
Sbjct: 104 KAMQYHKHDLTLAKSMNDRL--------GEAKSSGNLGNTLKVMGRFDEAAICCERHLTL 155

Query: 354 LESLTLKPEEA 364
              L  +  E 
Sbjct: 156 ARQLGDRLSEG 166

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 13/134 (9%)

Query: 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGG 290
           G   G LG+    +GD  AA+ +  + +   +     D         + + +G+   + G
Sbjct: 223 GRACGNLGNTYYLLGDFQAAIEHHQERLR--IAREFGDR---AAERRANSNLGNSHIFLG 277

Query: 291 DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350
             + A  +Y R+L +  +  +R           A S   + +    +   + A++     
Sbjct: 278 QFEDAAEHYKRTLALAVELGERE--------VEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329

Query: 351 IKRLESLTLKPEEA 364
           +   + L  +  EA
Sbjct: 330 LAIAQELGDRIGEA 343

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 14/116 (12%), Positives = 44/116 (37%), Gaps = 13/116 (11%)

Query: 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAAR 296
           LG+    +G  + A  ++  ++   + + + +       + S   +G+      +   A 
Sbjct: 269 LGNSHIFLGQFEDAAEHYKRTLA--LAVELGER---EVEAQSCYSLGNTYTLLHEFNTAI 323

Query: 297 SYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK 352
            Y+ R L + ++ +             A +   + +   +IG  + A+   ++ ++
Sbjct: 324 EYHNRHLAIAQE-LGDRI-------GEARACWSLGNAHSAIGGHERALKYAEQHLQ 371

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 26/166 (15%), Positives = 50/166 (30%), Gaps = 38/166 (22%)

Query: 206 LSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP 265
           +   TED+R                 A+   LG+    +GD + A+ Y    +   +   
Sbjct: 75  IQAGTEDLRTL--------------SAIYSQLGNAYFYLGDYNKAMQYHKHDLT--LAKS 118

Query: 266 MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAV 325
           M+D       + S   +G+     G    A     R L + R  +               
Sbjct: 119 MNDRLGE---AKSSGNLGNTLKVMGRFDEAAICCERHLTLAR-QLGDRL-------SEGR 167

Query: 326 SLAKVADVDRSIGNEDVAVD----------GFQEAIKRLE-SLTLK 360
           +L  + +V  + G      +              A++  + +L L 
Sbjct: 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 12/122 (9%), Positives = 41/122 (33%), Gaps = 15/122 (12%)

Query: 243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRS 302
            +G           + +       D    +      L   G+     GD +A  +++  +
Sbjct: 20  GLGSGGGGTNSHDGNSQ--QGSGSDGGSSMCL---ELALEGERLCNAGDCRAGVAFFQAA 74

Query: 303 LNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPE 362
           +    + ++           ++   +++ +    +G+ + A+   +  +   +S+  +  
Sbjct: 75  IQAGTEDLR----------TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124

Query: 363 EA 364
           EA
Sbjct: 125 EA 126

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 24/148 (16%)

Query: 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD--------LEIIHTL------S 276
           G  L  LG+   A G             +    L            L+++  L       
Sbjct: 166 GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEAL--TRAVEFYQENLKLMRDLGDRGAQG 223

Query: 277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS 336
            +   +G+  Y  GD QAA  ++   L + R+   R +           + + + +    
Sbjct: 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA--------ERRANSNLGNSHIF 275

Query: 337 IGNEDVAVDGFQEAIKRLESLTLKPEEA 364
           +G  + A + ++  +     L  +  EA
Sbjct: 276 LGQFEDAAEHYKRTLALAVELGEREVEA 303

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 30/151 (19%)

Query: 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDL----- 285
               G LG+  + MG  D A       +   +   + D     +   +L  +G++     
Sbjct: 126 AKSSGNLGNTLKVMGRFDEAAICCERHLT--LARQLGDR---LSEGRALYNLGNVYHAKG 180

Query: 286 KYYG------------GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADV 333
           K+ G              L  A  +Y  +L + RD   R             +   + + 
Sbjct: 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRG--------AQGRACGNLGNT 232

Query: 334 DRSIGNEDVAVDGFQEAIKRLESLTLKPEEA 364
              +G+   A++  QE ++       +  E 
Sbjct: 233 YYLLGDFQAAIEHHQERLRIAREFGDRAAER 263

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 55.3 bits (134), Expect = 9e-09
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 15/131 (11%)

Query: 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQ 293
           L + G+     GD  A V++F  +V+          E + TLS   +++G+  +Y  D  
Sbjct: 8   LALEGERLCKSGDCRAGVSFFEAAVQV-------GTEDLKTLSAIYSQLGNAYFYLHDYA 60

Query: 294 AARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR 353
            A  Y+   L + R    +           A +   + +  + +GN D A+   Q  +  
Sbjct: 61  KALEYHHHDLTLARTIGDQL--------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 112

Query: 354 LESLTLKPEEA 364
              L  K  EA
Sbjct: 113 SRELNDKVGEA 123

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 22/134 (16%), Positives = 47/134 (35%), Gaps = 13/134 (9%)

Query: 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGG 290
           G   G LG+    +G+   AV      +   +     D         + + +G+   + G
Sbjct: 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLL--IAKEFGDK---AAERRAYSNLGNAYIFLG 237

Query: 291 DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350
           + + A  YY ++L + R    R           A S   + +    + + + A+D   + 
Sbjct: 238 EFETASEYYKKTLLLARQLKDRA--------VEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289

Query: 351 IKRLESLTLKPEEA 364
           +   + L  +  E 
Sbjct: 290 LAIAQELKDRIGEG 303

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 24/180 (13%), Positives = 59/180 (32%), Gaps = 31/180 (17%)

Query: 206 LSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP 265
           + + TED++                 A+   LG+    + D   A+ Y    +   +   
Sbjct: 32  VQVGTEDLKTL--------------SAIYSQLGNAYFYLHDYAKALEYHHHDLT--LART 75

Query: 266 MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAV 325
           + D       + +   +G+     G+   A     R L++ R+   +           A 
Sbjct: 76  IGDQLGE---AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV--------GEAR 124

Query: 326 SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLE--QRRLSVLEFLNNQLSE 383
           +L  + +V  + G                +      + A ++  +  LS++  L ++ ++
Sbjct: 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN-ALQAA-VDLYEENLSLVTALGDRAAQ 182

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 17/121 (14%), Positives = 48/121 (39%), Gaps = 13/121 (10%)

Query: 237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAAR 296
           LG+    +G+ + A  Y+  ++   +   + D       + S   +G+      D + A 
Sbjct: 229 LGNAYIFLGEFETASEYYKKTLL--LARQLKDR---AVEAQSCYSLGNTYTLLQDYEKAI 283

Query: 297 SYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES 356
            Y+++ L + ++ +K              +   + +   ++GN D A+   ++ ++    
Sbjct: 284 DYHLKHLAIAQE-LKDRI-------GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335

Query: 357 L 357
           +
Sbjct: 336 V 336

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 11/82 (13%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADI--EKIEADTTLQDV 142
             C IC   L +   C  CS + C +CI R+       CP C A +   ++      ++V
Sbjct: 23  FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEV 82

Query: 143 VDRFIEGHARIKRSHTNSDKEE 164
             +       ++       +E 
Sbjct: 83  TQQL----DTLQLCSLTKHEEN 100

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 13/134 (9%)

Query: 231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGG 290
           G   G LG+    +G+   AV      +   +     D        ++ + +G+   + G
Sbjct: 9   GRAFGNLGNTHYLLGNFRDAVIAHEQRLL--IAKEFGDK---AAERIAYSNLGNAYIFLG 63

Query: 291 DLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350
           + + A  YY ++L + R    R           A S   + +    + + + A+D   + 
Sbjct: 64  EFETASEYYKKTLLLARQLKDRA--------VEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115

Query: 351 IKRLESLTLKPEEA 364
           +   + L  +  E 
Sbjct: 116 LAIAQELKDRIGEG 129

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 51.5 bits (123), Expect = 3e-08
 Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 8/74 (10%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADI---EKIEADTTLQD 141
           L C IC  +L        C H +C  CI        K+CP C   +     +  D     
Sbjct: 55  LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDA 114

Query: 142 VVDRFIEGHARIKR 155
           ++ +        + 
Sbjct: 115 LISKIYPSRDEYEA 128

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 92  CMICQALLFECSKCTPCSHVYCKACIS----RFKDCPLCGADIEKI 133
           C IC       S   PC H +C  CI+    +   CPLC   +E +
Sbjct: 8   CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 9/69 (13%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLCGADIEK---IEADTTLQD 141
             C+ CQ L+F     T C H  CK C+ R        CP C  D+ +   ++ +  LQ 
Sbjct: 53  FQCICCQELVFR-PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQT 111

Query: 142 VVDRFIEGH 150
           V+++   G+
Sbjct: 112 VLNQLFPGY 120

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 46.8 bits (111), Expect = 3e-07
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 5/57 (8%)

Query: 81  DAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEKI 133
                +  P  C IC+   F+    T C H +C++C          C +C      I
Sbjct: 7   GGSEEEEIPFRCFICRQA-FQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGI 62

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 48.5 bits (115), Expect = 3e-07
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 9/71 (12%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLCGADIEK---IEADTTLQD 141
             C+ CQ L+++    T C H  CK C+ R        CP C  D+ +   +  +  LQ 
Sbjct: 79  FMCVCCQELVYQ-PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQT 137

Query: 142 VVDRFIEGHAR 152
           ++D F  G+++
Sbjct: 138 LLDLFFPGYSK 148

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 45.4 bits (108), Expect = 5e-07
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRFK-DCPLC 126
           L C  CQA   +C K  PC H  C  C+      CP+C
Sbjct: 7   LRCQQCQAE-AKCPKLLPCLHTLCSGCLEASGMQCPIC 43

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 47.2 bits (112), Expect = 5e-07
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 15/94 (15%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLCGADIEKIEA--------- 135
             C IC  +L E     PC+H  CK C     +     CP C   +              
Sbjct: 16  CQCGICMEILVE-PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLV 74

Query: 136 DTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGE 169
           +  L  ++ +      +++ S   S++  D+   
Sbjct: 75  NVELWTIIQKHYPRECKLRASGQESEEVADDYQP 108

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 45.6 bits (108), Expect = 6e-07
 Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 5/45 (11%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRFKD----CPLCGADI 130
             C IC           PC HV+C  C+         C LC  +I
Sbjct: 16  PECAICLQTCVHPV-SLPCKHVFCYLCVKGASWLGKRCALCRQEI 59

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 57/437 (13%), Positives = 119/437 (27%), Gaps = 135/437 (30%)

Query: 17  PRKPGENSNKYPAEC---------PFSK---ARPDDAAS-RKAVENSAKPQAE---HDGD 60
            R+P   +  Y  E           F+K   +R       R+A+    +P        G 
Sbjct: 102 QRQPSMMTRMY-IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNVLID-GV 158

Query: 61  KA--KS----DSMDSASIPPKCPFGYDAQSF--KIG----PLSCM-ICQALL--FECSKC 105
               K+    D   S  +  K  F      F   +     P + + + Q LL   + +  
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKI----FWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 106 TPCSHVY--------CKACISRF------KDCPLCGADIEKIEADTTLQDV-----VDRF 146
           +   H           +A + R       ++C L       +     L +V      + F
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-------V-----LLNVQNAKAWNAF 262

Query: 147 IEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFLVQQAMRAFRAQNVESAKSRL 206
                +I    T   K+  +        +  +          +       + ++     L
Sbjct: 263 -NLSCKILL--TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQDL 318

Query: 207 SLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM 266
                             E+ +     L ++ +  R              + +    +  
Sbjct: 319 P----------------REVLTTNPRRLSIIAESIRDG----------LATWDNWKHVNC 352

Query: 267 DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL----- 321
           D L     +  SLN +   +Y        R  +   L+V   +     ++P+ +L     
Sbjct: 353 DKLT--TIIESSLNVLEPAEY--------RKMF-DRLSVFPPSA----HIPTILLSLIWF 397

Query: 322 --------DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSV 373
                    V   L K + V++      +++         LE       E  L +    +
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY-----LELKVKLENEYALHRS---I 449

Query: 374 LEFLNNQLSEKPPESTP 390
           ++  N   +    +  P
Sbjct: 450 VDHYNIPKTFDSDDLIP 466

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 5e-05
 Identities = 57/426 (13%), Positives = 109/426 (25%), Gaps = 173/426 (40%)

Query: 129 DIEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAG-----ENKKVIYEDVSMERG 183
           D E  E     +D++  F +       +    D ++         E   +I    ++   
Sbjct: 8   DFETGEHQYQYKDILSVFED---AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 184 AFL-----------VQQAMRAFRAQNVESAKSRL-------SLCTEDIRDQIERMGNTS- 224
             L           VQ+ +      N +   S +       S+ T    +Q +R+ N + 
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 225 ---------------------ELCSQLGAVL-GMLG--------DCCRAMGDADAAVAYF 254
                                EL      ++ G+LG        D C +           
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS----YKVQCKM 180

Query: 255 ADSVEFLMKL-----PMDDLEIIHTLSVSLN---------------KIGDLKYYGGDLQA 294
              + F + L     P   LE++  L   ++               +I  ++     L  
Sbjct: 181 DFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 295 ARSY--------------YVRSLNVR-------RDA---------VKRH----------- 313
           ++ Y                 + N+        R              H           
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 314 ----------------SNVPSQVLDV---AVSL--AKVAD-VDRSIGNEDVAVDGFQEAI 351
                            ++P +VL      +S+    + D +      + V  D     I
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 352 K-------------RLESLTLKPEEAGLEQRRLSVL--------------EFLNNQLSEK 384
           +               + L++ P  A +    LS++              +     L EK
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 385 -PPEST 389
            P EST
Sbjct: 420 QPKEST 425

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 43/337 (12%), Positives = 93/337 (27%), Gaps = 99/337 (29%)

Query: 62  AKSDSMDSASIPPKCPFGYDAQSFKIGPLSCMICQALL---------FECSKCTPCSHVY 112
            K        +P         +     P    I    +         ++   C   + + 
Sbjct: 308 LKYLDCRPQDLPR--------EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 113 CKACIS---------RFKDCPLCGADIEKIEADT-----------TLQDVVDRFIEGHAR 152
            ++ ++          F    +       I                +  VV++       
Sbjct: 360 -ESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIWFDVIKSDVMVVVNKLH----- 412

Query: 153 IKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFLVQQA--MRAFRAQNVESAKSRLSLCT 210
            K S      +E     +   I   + +E    L  +     A     V+      +  +
Sbjct: 413 -KYSLVEKQPKE-----STISIP-SIYLE----LKVKLENEYALHRSIVDHYNIPKTFDS 461

Query: 211 EDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD-- 268
           +D+              S +G            + + +       + +     + +D   
Sbjct: 462 DDLIPPYLDQ----YFYSHIG----------HHLKNIEHP-----ERMTLFRMVFLDFRF 502

Query: 269 LE--IIHT------LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN--VPS 318
           LE  I H           LN +  LK+Y   +      Y R +N   D + +     + S
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562

Query: 319 QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355
           +  D+         +  ++  ED A+  F+EA K+++
Sbjct: 563 KYTDL---------LRIALMAEDEAI--FEEAHKQVQ 588

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 6/46 (13%)

Query: 91  SCMICQALLFECSKCTPCSHVYCKACISRF------KDCPLCGADI 130
            C IC +LL +   C  C       C++++        CP C    
Sbjct: 17  ICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 22/156 (14%), Positives = 52/156 (33%), Gaps = 19/156 (12%)

Query: 229 QLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYY 288
           +    L ++          D A+ +   ++E  M +  D        ++SL  I +    
Sbjct: 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFI-----AISLLNIANSYDR 234

Query: 289 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ 348
            GD Q A  ++ ++  V R+ V            +   L  ++      G    A    +
Sbjct: 235 SGDDQMAVEHFQKAAKVSREKVPDL---------LPKVLFGLSWTLCKAGQTQKAFQFIE 285

Query: 349 EAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQLSEK 384
           E +  + + + K  +          L+ +  +  ++
Sbjct: 286 EGLDHITARSHKFYKE-----LFLFLQAVYKETVDE 316

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 46.3 bits (110), Expect = 9e-06
 Identities = 17/129 (13%), Positives = 44/129 (34%), Gaps = 12/129 (9%)

Query: 236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAA 295
             G       +   A+ Y+ ++ + L  +  DD+E          K+ +  Y+      +
Sbjct: 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVS-DDIEKAE----FHFKVAEAYYHMKQTHVS 160

Query: 296 RSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE 355
             + +++L++ ++                 SL  +A       + D A+   + A++   
Sbjct: 161 MYHILQALDIYQNHPLYSIR-------TIQSLFVIAGNYDDFKHYDKALPHLEAALELAM 213

Query: 356 SLTLKPEEA 364
            +      A
Sbjct: 214 DIQNDRFIA 222

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 19/170 (11%), Positives = 50/170 (29%), Gaps = 14/170 (8%)

Query: 197 QNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLG--MLGDCCRAMGDADAAVAYF 254
           + +E  +         + D +  +       + L         G       +  +A+ +F
Sbjct: 67  EYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFF 126

Query: 255 ADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS 314
             +   L+ +  D +E          K+ +  YY      +  Y  ++  + ++    + 
Sbjct: 127 KKAESKLIFVK-DRIEKAE----FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181

Query: 315 NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEA 364
                   +    +  A     +   + A+  FQ+A    E+        
Sbjct: 182 R-------LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG 224

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 46.7 bits (111), Expect = 8e-06
 Identities = 17/157 (10%), Positives = 45/157 (28%), Gaps = 18/157 (11%)

Query: 228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKY 287
            +L     +       +   + A+++F  +           L        +L  IG  K 
Sbjct: 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM-----GRTLYNIGLCKN 235

Query: 288 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF 347
                + A  Y+ R++ V  ++             +  +   +  +   +G  D A +  
Sbjct: 236 SQSQYEDAIPYFKRAIAVFEESNILP--------SLPQAYFLITQIHYKLGKIDKAHEYH 287

Query: 348 QEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQLSEK 384
            + +   +        +         L+ L     ++
Sbjct: 288 SKGMAYSQKAGDVIYLS-----EFEFLKSLYLSGPDE 319

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 42.9 bits (101), Expect = 5e-06
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 10/55 (18%)

Query: 88  GPLSCMICQALLFECSK------CTPCSHVYCKACISRF----KDCPLCGADIEK 132
           G +SC IC     E  +       T C HV+C  C+         CP C   I  
Sbjct: 9   GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 42.5 bits (100), Expect = 7e-06
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEK 132
             C  C  +L    + T C H +C++C++         C  C   I K
Sbjct: 16  YKCEKCHLVLCSPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVK 62

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 42.8 bits (101), Expect = 9e-06
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 9/75 (12%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRF------KDCPLCGA---DIEKIEADTTLQ 140
           L C+IC+ ++ +      C + YC  CI           CP C       + + A+  L+
Sbjct: 14  LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLR 73

Query: 141 DVVDRFIEGHARIKR 155
             V+ F       KR
Sbjct: 74  QAVNNFKNETGYTKR 88

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACI-----SRFKDCPLCGADIEKIE 134
             C IC     +  K  PC H+ C +C+     S  + CP C  +I+  E
Sbjct: 333 QLCKICAEN-DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 10/55 (18%)

Query: 88  GPLSCMICQALLFECSK------CTPCSHVYCKACI----SRFKDCPLCGADIEK 132
             +SC IC     E  +       T C HV+C  C+         CP C   I  
Sbjct: 2   AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLC 126
             C IC   L E    TPC H +CKACI +        CP+ 
Sbjct: 19  YECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVD 59

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 10/49 (20%)

Query: 88  GPLSCMICQALLFECSK------CTPCSHVYCKACIS----RFKDCPLC 126
           G +SC IC     E  +       T C HV+C  C+         CP C
Sbjct: 14  GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTC 62

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 9/85 (10%)

Query: 64  SDSMDSASIPPKCPFGYDAQSFKIGP---LSCMICQALLFECSKCTPCSHVYCKACISRF 120
           + S+           G+              C  C+ +L        C H YC  C++  
Sbjct: 3   AASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRP-FQAQCGHRYCSFCLASI 61

Query: 121 KD-----CPLCGADIEKIEADTTLQ 140
                  C  C  +    E  + L+
Sbjct: 62  LSSGPQNCAACVHEGIYEEGISILE 86

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 16/123 (13%), Positives = 33/123 (26%), Gaps = 14/123 (11%)

Query: 234 LGMLGDCCRAMGDADAAVAYFADSVE-FLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDL 292
           L  L   C+  G  +    Y+  ++E +  KL  DD  +      + N +       G  
Sbjct: 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVA----KTKNNLASCYLKQGKF 211

Query: 293 QAARSYYVRSLNVRRDAV--KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA 350
           + A + Y   L    +               +         + +   G +       +  
Sbjct: 212 KQAETLYKEILTRAHEREFGSVDD-------ENKPIWMHAEEREECKGKQKDGTSFGEYG 264

Query: 351 IKR 353
              
Sbjct: 265 GWY 267

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 23/149 (15%)

Query: 234 LGMLGDCCRAMGDADAAVAYFADSVEFLMK-LPMDDLEIIHTLSVSLNKIGDLKYYGGDL 292
           L  L     + G  + AV     ++E L K    D  ++       LN +  +       
Sbjct: 30  LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVA----TMLNILALVYRDQNKY 85

Query: 293 QAARSYYVRSLNVRRDAV-KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351
           + A +    +L +R   + K H         VA +L  +A +    G        ++EA 
Sbjct: 86  KDAANLLNDALAIREKTLGKDH-------PAVAATLNNLAVLYGKRGK-------YKEAE 131

Query: 352 KRLE-SLTLKPEEAGLEQRRLSVLEFLNN 379
              + +L ++  E  L +    V + LNN
Sbjct: 132 PLCKRALEIR--EKVLGKDHPDVAKQLNN 158

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 13/123 (10%)

Query: 237 LGDCCRAMGDADAAVAYFADSVE-FLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAA 295
           L    R       A     D++      L  D   +      +LN +  L    G  + A
Sbjct: 75  LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAA----TLNNLAVLYGKRGKYKEA 130

Query: 296 RSYYVRSLNVRRDAV-KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL 354
                R+L +R   + K H        DVA  L  +A + ++ G  +     +Q A++  
Sbjct: 131 EPLCKRALEIREKVLGKDH-------PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183

Query: 355 ESL 357
           ++ 
Sbjct: 184 QTK 186

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 6/43 (13%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRF------KDCPLC 126
           L C+IC+ ++ +      C + YC  CI           CP C
Sbjct: 16  LLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTC 58

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 12/69 (17%)

Query: 90  LSCMICQALLFE-CSKCTPCSHVYCKACISRFKD-------CPLCGADIEK--IEADTTL 139
           L C IC  L+ E  S  T C H++CK C+ +  +       CPLC  DI K  ++  T  
Sbjct: 22  LECPICLELIKEPVS--TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRF 79

Query: 140 QDVVDRFIE 148
             +V+  ++
Sbjct: 80  SQLVEELLK 88

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 43.2 bits (101), Expect = 5e-05
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 6/58 (10%)

Query: 80  YDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRF------KDCPLCGADIE 131
           Y  +++      C IC +LL +   C  C       C++++        CP C     
Sbjct: 171 YIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 40.7 bits (95), Expect = 9e-05
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLC 126
           +SC IC+ +L +    T C H++C+ CI R        CP C
Sbjct: 24  ISCQICEHILADP-VETSCKHLFCRICILRCLKVMGSYCPSC 64

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 8/44 (18%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRFKD-------CPLC 126
           + C IC  +L +      C H +C  CI++  +       CPLC
Sbjct: 21  VICPICLDILQK-PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 8/44 (18%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRFKD-------CPLC 126
            SC +C   L E      C H +CKACI+R+ +       CP+C
Sbjct: 16  ASCSVCLEYLKE-PVIIECGHNFCKACITRWWEDLERDFPCPVC 58

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 6/45 (13%)

Query: 92  CMICQALLFECSKCTPCSHVYCKACIS----RFKDCPLCGADIEK 132
           C IC           PC+H +C+ CI     R ++CP+C   +  
Sbjct: 18  CCICMD--GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 234 LGMLGDCCRAMGDADAAVAYFADSVE-FLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDL 292
           L +L    R       A     D++      L  D   +      +LN +  L    G  
Sbjct: 46  LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAA----TLNNLAVLYGKRGKY 101

Query: 293 QAARSYYVRSLNVRRDAV-KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI 351
           + A     R+L +R   + K H        DVA  L  +A + ++ G  +     ++ A+
Sbjct: 102 KEAEPLCKRALEIREKVLGKFH-------PDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154

Query: 352 K 352
           +
Sbjct: 155 E 155

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 11/47 (23%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRFKD----------CPLC 126
           ++C IC  LL E      C+H +C+ACI+   +          CP+C
Sbjct: 20  VTCPICLELLKE-PVSADCNHSFCRACITLNYESNRNTDGKGNCPVC 65

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 8/44 (18%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRFKD-------CPLC 126
           + C IC  +L +      C H +C  CI++  +       CPLC
Sbjct: 21  VICPICLDILQK-PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 22/155 (14%), Positives = 53/155 (34%), Gaps = 15/155 (9%)

Query: 230 LGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYG 289
                 +        G+ D A          L +LP       ++  V+ + +G++ +  
Sbjct: 13  HAEFNALRAQVAINDGNPDEAERLAK---LALEELPPGWF---YSRIVATSVLGEVLHCK 66

Query: 290 GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE 349
           G+L  + +   ++  + R     H            SL + +++  + G    A +  ++
Sbjct: 67  GELTRSLALMQQTEQMARQHDVWH--------YALWSLIQQSEILFAQGFLQTAWETQEK 118

Query: 350 AIKRLESLTLKP-EEAGLEQRRLSVLEFLNNQLSE 383
           A + +    L+         R  + L +   +L E
Sbjct: 119 AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 153

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Length = 101

 Score = 39.1 bits (90), Expect = 3e-04
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 5/48 (10%)

Query: 92  CMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEKIE 134
           C  C   +    +  PC HV+C  C         K CP C   +++IE
Sbjct: 4   CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 11/47 (23%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRFKD----------CPLC 126
           ++C IC  LL +      C H +C+AC++              CP+C
Sbjct: 20  VTCPICLELLTQ-PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVC 65

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRFKD-----CPLCGADIEK 132
             C IC   L E    TPC H +CKACI +        CP+    + +
Sbjct: 19  YECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 12/48 (25%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRFKD-----------CPLC 126
           ++C IC  LL E      C H  C+ACI+               CP+C
Sbjct: 13  VTCPICLELLTE-PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVC 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	392
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.31
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.26
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.23
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.23
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.23
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.21
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.21
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.16
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.16
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.12
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.11
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.11
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.1
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.09
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.07
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.04
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.04
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.03
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.98
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.98
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.97
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.96
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.93
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.93
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	98.93
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.91
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.9
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	98.89
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	98.89
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.88
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	98.87
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	98.87
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.87
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.86
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.86
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.86
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.82
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.81
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	98.8
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.79
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.79
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.78
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.77
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.77
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.74
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.74
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.73
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	98.73
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.72
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.71
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.71
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.71
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.71
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.71
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.69
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.68
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.68
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.66
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.66
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.66
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.65
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.64
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.63
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.63
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.62
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.61
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.61
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.6
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.6
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.58
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.58
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.56
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.54
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.53
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.53
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.52
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.49
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.48
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.48
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.47
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.47
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.47
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.47
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.47
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.47
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.46
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.46
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.42
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.42
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.39
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.36
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.35
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.34
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.33
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.32
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.31
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.31
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.29
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.29
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.29
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.26
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.24
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.24
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.22
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.21
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.19
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.18
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.17
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.17
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.16
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.14
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.14
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.11
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.11
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.11
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.1
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.1
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.05
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.03
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.02
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.01
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.0
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.0
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.99
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.99
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.98
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.96
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.94
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.93
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.92
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.92
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	97.9
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.88
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.88
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.84
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.83
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.83
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.8
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.8
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.79
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.79
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.78
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	97.74
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.73
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.72
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.72
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.7
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.7
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.69
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.69
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.68
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.67
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.66
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.65
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.65
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.63
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.62
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.62
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.59
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.59
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.59
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.58
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.58
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.58
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.55
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.55
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.55
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.54
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.52
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.51
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.5
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.5
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.49
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.47
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.47
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.45
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.45
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.44
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.44
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.43
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.41
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.4
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	97.38
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.37
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.36
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.36
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.35
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.35
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.33
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.33
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.32
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.31
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.31
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.3
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.29
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.29
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.28
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.25
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.24
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.22
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.19
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.18
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.16
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.16
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.15
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.15
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.14
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.14
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.13
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.13
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.12
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.05
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.04
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.03
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.03
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.02
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.0
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	96.99
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	96.98
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	96.97
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	96.96
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	96.93
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	96.89
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	96.84
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	96.82
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.77
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.74
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.7
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.66
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	96.64
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.56
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	96.45
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	96.45
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	96.32
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.32
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	96.25
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	96.14
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	96.08
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	95.98
2l6j_A	111	TPR repeat-containing protein associated with HSP;	95.83
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	95.62
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	95.56
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	95.47
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	95.17
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	94.96
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	94.87
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	94.86
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	94.71
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	94.49
2kat_A	115	Uncharacterized protein; NESG, structure, structur	94.36
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	94.04
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.72
1klx_A	138	Cysteine rich protein B; structural genomics, heli	93.22
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	92.96
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	92.87
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	92.19
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	91.42
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	91.38
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	91.29
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	90.85
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	90.59
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	90.32
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	89.94
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	89.71
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	89.35
1klx_A	138	Cysteine rich protein B; structural genomics, heli	89.34
3nw0_A	238	Non-structural maintenance of chromosomes element	88.13
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	87.94
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	87.65
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	87.22
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	85.92
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	85.43
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	84.14
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	83.68
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	83.26
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	83.24
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	82.51
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	81.84
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	80.94

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.31  E-value=1.8e-12  Score=101.17  Aligned_cols=62  Identities=27%  Similarity=0.676  Sum_probs=55.4

Q ss_pred             CCeeccccccccccCceecc-CCCcchHHhHHhcC------CCCCCCCCccc---chhhhHHHHHHHHHHhhc
Q 016258           88 GPLSCMICQALLFECSKCTP-CSHVYCKACISRFK------DCPLCGADIEK---IEADTTLQDVVDRFIEGH  150 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~-C~h~fC~~Ci~~~~------~CP~C~~~~~~---~~~n~~l~~~v~~~~~~~  150 (392)
                      +.+.|+||++++. +|++++ |||+||..||..|+      .||.|+..+..   +.+|..+.++++.++...
T Consensus        12 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~   83 (92)
T 3ztg_A           12 DELLCLICKDIMT-DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNET   83 (92)
T ss_dssp             TTTEETTTTEECS-SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCChhhc-CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHH
Confidence            5799999999998 999999 99999999999884      69999999742   899999999999998643

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.26  E-value=1.9e-12  Score=97.74  Aligned_cols=61  Identities=15%  Similarity=0.334  Sum_probs=55.2

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc--chhhhHHHHHHHHHHhh
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRFIEG  149 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~~v~~~~~~  149 (392)
                      +.+.|+||++++. +|++++|||+||+.||..|+     .||.|+..+..  +.+|..|+++++.+...
T Consensus         7 ~~~~C~IC~~~~~-~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~   74 (78)
T 1t1h_A            7 EYFRCPISLELMK-DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCES   74 (78)
T ss_dssp             SSSSCTTTSCCCS-SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHH
T ss_pred             ccCCCCCcccccc-CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHH
Confidence            5799999999988 99999999999999999983     49999999875  88999999999999863

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.23  E-value=6.8e-12  Score=96.42  Aligned_cols=62  Identities=13%  Similarity=0.191  Sum_probs=56.6

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc--chhhhHHHHHHHHHHhhc
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFIEGH  150 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~v~~~~~~~  150 (392)
                      +.|.|+||++++. +|++++|||+||+.||..|+    .||.|+..+..  +.+|..|+++++.+....
T Consensus        13 ~~~~CpI~~~~m~-dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~   80 (85)
T 2kr4_A           13 DEFRDPLMDTLMT-DPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMREK   80 (85)
T ss_dssp             TTTBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred             hheECcccCchhc-CCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHHHHh
Confidence            5799999999999 99999999999999999995    59999999876  999999999999998643

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.23  E-value=5.3e-12  Score=99.98  Aligned_cols=61  Identities=11%  Similarity=0.206  Sum_probs=56.5

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc--chhhhHHHHHHHHHHhh
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFIEG  149 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~v~~~~~~  149 (392)
                      +.|.||||++++. +|++++|||+||+.||..|+    .||.|+.++..  +.+|..|+++++.+...
T Consensus        28 ~~~~CpI~~~~m~-dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~   94 (100)
T 2kre_A           28 DEFRDPLMDTLMT-DPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMRE   94 (100)
T ss_dssp             TTTBCTTTCSBCS-SEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHT
T ss_pred             HhhCCcCccCccc-CCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHHHH
Confidence            5799999999999 99999999999999999996    39999999876  99999999999999864

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.23  E-value=2.8e-11  Score=95.48  Aligned_cols=62  Identities=18%  Similarity=0.241  Sum_probs=57.0

Q ss_pred             CCeeccccccccccCceeccCC-CcchHHhHHhcCC----CCCCCCCccc--chhhhHHHHHHHHHHhhc
Q 016258           88 GPLSCMICQALLFECSKCTPCS-HVYCKACISRFKD----CPLCGADIEK--IEADTTLQDVVDRFIEGH  150 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~-h~fC~~Ci~~~~~----CP~C~~~~~~--~~~n~~l~~~v~~~~~~~  150 (392)
                      ++|.||||++++. +|++++|| |+||+.||..|+.    ||.|+.++..  +.+|..|+++|+.+....
T Consensus        21 ~~~~CpI~~~~m~-dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~   89 (98)
T 1wgm_A           21 DEFLDPIMSTLMC-DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER   89 (98)
T ss_dssp             TTTBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHS
T ss_pred             HhcCCcCcccccc-CCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHHc
Confidence            5799999999999 99999999 9999999999973    9999999886  899999999999998654

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.21  E-value=4.5e-12  Score=103.52  Aligned_cols=63  Identities=22%  Similarity=0.570  Sum_probs=56.1

Q ss_pred             CCeeccccccccccCceec-cCCCcchHHhHHhcC--CCCCCCCCccc--chhhhHHHHHHHHHHhhch
Q 016258           88 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK--DCPLCGADIEK--IEADTTLQDVVDRFIEGHA  151 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~--~CP~C~~~~~~--~~~n~~l~~~v~~~~~~~~  151 (392)
                      +.+.|+||++++. +|+++ +|||+||..||..|+  .||.|+..+..  +.+|..+.++++.+.....
T Consensus        21 ~~~~C~IC~~~~~-~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~~   88 (117)
T 1jm7_B           21 KLLRCSRCTNILR-EPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLCSKLRN   88 (117)
T ss_dssp             HTTSCSSSCSCCS-SCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHHH
T ss_pred             hCCCCCCCChHhh-CccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHHHHHHHHHHH
Confidence            4799999999998 89998 999999999999996  59999999865  8899999999999876443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.21  E-value=1.7e-10  Score=116.82  Aligned_cols=130  Identities=15%  Similarity=0.097  Sum_probs=114.0

Q ss_pred             hhhhcchhHHHhHHHHHHHHHHh-CCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 016258          241 CRAMGDADAAVAYFADSVEFLMK-LPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ  319 (392)
Q Consensus       241 C~~~gdhh~a~~~~e~~~~~~~~-L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~  319 (392)
                      .+.+|++.+|+++++++++...+ |++.++.    +..++++|+.++..+|+|++|+.+|+++|++++..+.....    
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~----~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp----  390 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLY----VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA----  390 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH----
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH----
Confidence            34789999999999999777654 5555554    56789999999999999999999999999999998876553    


Q ss_pred             hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchHHHHHHHHHHHHHHHH
Q 016258          320 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       320 ~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l--~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                        +++.++++||.+|..+|++++|+.+|++|++|++..  .+||..+.++.+++..+..++..
T Consensus       391 --~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~  451 (490)
T 3n71_A          391 --QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMF  451 (490)
T ss_dssp             --HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Confidence              899999999999999999999999999999999998  89999999999999888766653

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.16  E-value=1.2e-11  Score=102.11  Aligned_cols=61  Identities=33%  Similarity=0.805  Sum_probs=55.0

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc---chhhhHHHHHHHHHHhh
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK---IEADTTLQDVVDRFIEG  149 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~---~~~n~~l~~~v~~~~~~  149 (392)
                      +.+.|+||++++. +|++++|||+||..||..|+     .||.||..+..   +.+|..+.++++.+...
T Consensus        51 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~  119 (124)
T 3fl2_A           51 ETFQCICCQELVF-RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG  119 (124)
T ss_dssp             HHTBCTTTSSBCS-SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred             cCCCCCcCChHHc-CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence            4689999999998 99999999999999999884     69999999876   89999999999988753

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.16  E-value=2.7e-10  Score=113.56  Aligned_cols=119  Identities=13%  Similarity=0.066  Sum_probs=103.2

Q ss_pred             hhcchhHHHhHHHHHHHHHH-hCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchh
Q 016258          243 AMGDADAAVAYFADSVEFLM-KLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL  321 (392)
Q Consensus       243 ~~gdhh~a~~~~e~~~~~~~-~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~  321 (392)
                      ..|++.+|+++++++++... .|++.++.    +..++++|+.++..+|+|++|+.+|+++|++++..+.....      
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~----~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp------  379 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVY----MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL------  379 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH------
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchH----HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh------
Confidence            34677899999999977665 46665554    56689999999999999999999999999999998876554      


Q ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchHHHHHHH
Q 016258          322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRRL  371 (392)
Q Consensus       322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l--~~~p~~a~~l~~~~  371 (392)
                      +++.++++||.+|..+|++++|+.+|++|++|++..  .+||..+.+.+++.
T Consensus       380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          380 NVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            899999999999999999999999999999999998  88898887777664

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.12  E-value=3.7e-11  Score=94.98  Aligned_cols=64  Identities=27%  Similarity=0.647  Sum_probs=56.4

Q ss_pred             CCeeccccccccccCceec-cCCCcchHHhHHhcC----CCCCCCCCccc--chhhhHHHHHHHHHHhhchh
Q 016258           88 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFIEGHAR  152 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~v~~~~~~~~~  152 (392)
                      +.+.|+||++.+. +|+++ +|||+||..||..|+    .||.|+..+..  +.+|..+.++++.++.....
T Consensus        21 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~~   91 (99)
T 2y43_A           21 DLLRCGICFEYFN-IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFARNH   91 (99)
T ss_dssp             HHTBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred             CCCCcccCChhhC-CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHHH
Confidence            4689999999998 88887 899999999999984    59999999886  88999999999999875443

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.11  E-value=2.5e-11  Score=96.22  Aligned_cols=61  Identities=25%  Similarity=0.551  Sum_probs=53.8

Q ss_pred             CCeeccccccccccCcee-ccCCCcchHHhHHhc-----CCCCCCCCCccc--chhhhHHHHHHHHHHhh
Q 016258           88 GPLSCMICQALLFECSKC-TPCSHVYCKACISRF-----KDCPLCGADIEK--IEADTTLQDVVDRFIEG  149 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~-~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~--~~~n~~l~~~v~~~~~~  149 (392)
                      +.+.|+||++++. +|++ ++|||+||..||..|     ..||.||..+..  +..+..+.++++.+...
T Consensus        21 ~~~~C~IC~~~~~-~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l   89 (100)
T 3lrq_A           21 EVFRCFICMEKLR-DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL   89 (100)
T ss_dssp             HHTBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred             CCCCCccCCcccc-CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence            4799999999998 8998 999999999999998     369999999876  77888888888887654

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=3.9e-11  Score=94.00  Aligned_cols=63  Identities=22%  Similarity=0.447  Sum_probs=54.6

Q ss_pred             CCeeccccccccccCceecc-CCCcchHHhHHhcC----------CCCC--CCCC-ccc--chhhhHHHHHHHHHHhhch
Q 016258           88 GPLSCMICQALLFECSKCTP-CSHVYCKACISRFK----------DCPL--CGAD-IEK--IEADTTLQDVVDRFIEGHA  151 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~-C~h~fC~~Ci~~~~----------~CP~--C~~~-~~~--~~~n~~l~~~v~~~~~~~~  151 (392)
                      ..|.||||++++. +|++++ |||+||+.||..|+          .||.  |+.. +..  +.+|..|+++|+.++....
T Consensus         6 ~~~~CPI~~~~~~-dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~~   84 (94)
T 2yu4_A            6 SGFTCPITKEEMK-KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKRH   84 (94)
T ss_dssp             SCCBCTTTCSBCS-SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTCC
T ss_pred             cEeECcCcCchhc-CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHhc
Confidence            5699999999999 999996 99999999999983          6999  8865 544  9999999999999986443

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.10  E-value=3.9e-11  Score=100.82  Aligned_cols=59  Identities=25%  Similarity=0.796  Sum_probs=49.0

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCcccchhhhHHHHHHHHHH
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEKIEADTTLQDVVDRFI  147 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~~~~n~~l~~~v~~~~  147 (392)
                      +++.|+||++.+. +|++++|||+||..||..|+    .||.||.++.....+..+..++..+.
T Consensus        52 ~~~~C~iC~~~~~-~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~i~~~~  114 (138)
T 4ayc_A           52 NELQCIICSEYFI-EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINKMV  114 (138)
T ss_dssp             HHSBCTTTCSBCS-SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEEECHHHHHHHHHHH
T ss_pred             ccCCCcccCcccC-CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCCCccchhHHHHHHH
Confidence            3588999999998 99999999999999999995    49999999887555666666665554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.09  E-value=5.9e-10  Score=111.08  Aligned_cols=127  Identities=15%  Similarity=0.001  Sum_probs=109.0

Q ss_pred             hhhcchhHHHhHHHHHHHHHH-hCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 016258          242 RAMGDADAAVAYFADSVEFLM-KLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQV  320 (392)
Q Consensus       242 ~~~gdhh~a~~~~e~~~~~~~-~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~  320 (392)
                      +.+|++.+|+.+++.+++... .|++.++    .+..++++|+.++..+|+|++|+.+|+++|++++..+.....     
T Consensus       298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~----~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp-----  368 (429)
T 3qwp_A          298 KAHWKWEQVLAMCQAIISSNSERLPDINI----YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP-----  368 (429)
T ss_dssp             HHTTCHHHHHHHHHHHHTCSSCCCCTTSH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH-----
T ss_pred             HhhccHHHHHHHHHHHHHhccCcCCccch----HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh-----
Confidence            367778888888887765543 4555444    456789999999999999999999999999999998865543     


Q ss_pred             hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchHHHHHHHHHHHHHH
Q 016258          321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       321 ~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l--~~~p~~a~~l~~~~~~~~~l~  378 (392)
                       +++.++++||.+|..+|++++|+.+|++|++|++..  .+||..+.++++++.+...|+
T Consensus       369 -~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          369 -VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence             899999999999999999999999999999999998  889999999999998877665

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.07  E-value=6.3e-11  Score=100.92  Aligned_cols=60  Identities=32%  Similarity=0.733  Sum_probs=54.3

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc---chhhhHHHHHHHHHHh
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK---IEADTTLQDVVDRFIE  148 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~---~~~n~~l~~~v~~~~~  148 (392)
                      +.+.|+||++++. +|++++|||+||..||..|+     .||.||..+..   +.+|..+.++++.+..
T Consensus        77 ~~~~C~IC~~~~~-~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p  144 (150)
T 1z6u_A           77 QSFMCVCCQELVY-QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP  144 (150)
T ss_dssp             HHTBCTTTSSBCS-SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred             cCCEeecCChhhc-CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence            4589999999988 99999999999999999983     59999999885   7899999999998874

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=1.9e-10  Score=87.33  Aligned_cols=50  Identities=22%  Similarity=0.624  Sum_probs=43.4

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc-chhhhH
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK-IEADTT  138 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~-~~~n~~  138 (392)
                      ..+.|+||++.+. +|++++|||+||..||..|+    .||.|+..+.. +.+|..
T Consensus        14 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~   68 (81)
T 2csy_A           14 IPFRCFICRQAFQ-NPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKE   68 (81)
T ss_dssp             CCSBCSSSCSBCC-SEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCSCCEECHH
T ss_pred             CCCCCcCCCchhc-CeeEccCCCHhHHHHHHHHHHCCCcCCCcCccccccCCcHHH
Confidence            4689999999998 89999999999999999994    59999999876 666643

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.04  E-value=1.1e-10  Score=93.83  Aligned_cols=61  Identities=36%  Similarity=0.892  Sum_probs=53.3

Q ss_pred             CCeeccccccccccCceec-cCCCcchHHhHHhcC----CCCCCCCCccc------chhhhHHHHHHHHHHhh
Q 016258           88 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK----DCPLCGADIEK------IEADTTLQDVVDRFIEG  149 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~----~CP~C~~~~~~------~~~n~~l~~~v~~~~~~  149 (392)
                      +.+.|+||++++. +|+++ +|||+||..||..|+    .||.|+..+..      +.+|..+.++++.+...
T Consensus        14 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~   85 (108)
T 2ckl_A           14 PHLMCVLCGGYFI-DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPG   85 (108)
T ss_dssp             GGTBCTTTSSBCS-SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTT
T ss_pred             CcCCCccCChHHh-CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhhh
Confidence            5799999999998 88887 999999999999993    59999998763      67899999999988653

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.03  E-value=2.7e-11  Score=91.49  Aligned_cols=53  Identities=32%  Similarity=0.760  Sum_probs=44.8

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC-----------CCCCCCCCccc--chhhhHHHH
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----------DCPLCGADIEK--IEADTTLQD  141 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----------~CP~C~~~~~~--~~~n~~l~~  141 (392)
                      +.+.|+||++.+. +|++++|||+||..||..|+           .||.||..+..  +.+|..+.+
T Consensus        11 ~~~~C~IC~~~~~-~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~   76 (79)
T 2egp_A           11 EEVTCPICLELLT-EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN   76 (79)
T ss_dssp             CCCEETTTTEECS-SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred             cCCCCcCCCcccC-CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence            5799999999988 89999999999999999873           49999998875  666665543

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.98  E-value=2.3e-10  Score=92.93  Aligned_cols=60  Identities=23%  Similarity=0.610  Sum_probs=52.1

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc---------chhhhHHHHHHHHHHh
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK---------IEADTTLQDVVDRFIE  148 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~---------~~~n~~l~~~v~~~~~  148 (392)
                      +++.|+||++++. +|++++|||+||..||..|+     .||.||..+..         +..|..+.+++..+..
T Consensus        14 ~~~~C~iC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p   87 (115)
T 3l11_A           14 SECQCGICMEILV-EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP   87 (115)
T ss_dssp             HHHBCTTTCSBCS-SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred             CCCCCccCCcccC-ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence            5799999999998 99999999999999999985     49999998763         5578888888888763

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.98  E-value=2.9e-10  Score=106.42  Aligned_cols=61  Identities=20%  Similarity=0.258  Sum_probs=55.7

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc--chhhhHHHHHHHHHHhh
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRFIEG  149 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~~v~~~~~~  149 (392)
                      ..+.|+||++++. +|++++|||+||+.||..|+     .||.|+.++..  +.+|..|+++|+.+...
T Consensus       207 ~~~~c~i~~~~~~-dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~  274 (281)
T 2c2l_A          207 DYLCGKISFELMR-EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISE  274 (281)
T ss_dssp             STTBCTTTCSBCS-SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTT
T ss_pred             cccCCcCcCCHhc-CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHH
Confidence            5699999999999 99999999999999999984     39999999886  89999999999999863

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.97  E-value=3.5e-10  Score=98.49  Aligned_cols=61  Identities=20%  Similarity=0.258  Sum_probs=55.8

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc--chhhhHHHHHHHHHHhh
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRFIEG  149 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~~v~~~~~~  149 (392)
                      ..|.||||++++. +|++++|||+||+.||..|+     .||.|+.++..  +.+|..|+++++.+...
T Consensus       105 ~~f~CPI~~elm~-DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~  172 (179)
T 2f42_A          105 DYLCGKISFELMR-EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQE  172 (179)
T ss_dssp             GGGBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred             HhhcccCccccCC-CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHH
Confidence            5799999999999 99999999999999999984     39999999876  99999999999999764

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.96  E-value=3.7e-10  Score=92.21  Aligned_cols=58  Identities=28%  Similarity=0.534  Sum_probs=49.4

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc--chhhhHHHHHHHHH
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRF  146 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~~v~~~  146 (392)
                      +.+.|+||++++. +|++++|||+||..||..|+     .||.||..+..  +.++..+.+++..+
T Consensus        17 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l   81 (118)
T 3hct_A           17 SKYECPICLMALR-EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL   81 (118)
T ss_dssp             GGGBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred             CCCCCCcCChhhc-CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence            5799999999998 99999999999999999983     79999999877  66777776666543

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.93  E-value=1.6e-10  Score=93.25  Aligned_cols=61  Identities=33%  Similarity=0.786  Sum_probs=51.3

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC-------CCCCCCCCccc--chhhhHHHHHHHHHHhh
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLCGADIEK--IEADTTLQDVVDRFIEG  149 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-------~CP~C~~~~~~--~~~n~~l~~~v~~~~~~  149 (392)
                      +.+.|+||++.+. +|++++|||+||..||..|+       .||.|+..+..  +.+|..+.++++.+...
T Consensus        20 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~   89 (112)
T 1jm7_A           20 KILECPICLELIK-EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKI   89 (112)
T ss_dssp             HHTSCSSSCCCCS-SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred             CCCCCcccChhhc-CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHH
Confidence            3578999999988 89999999999999999983       59999998876  66777777777777653

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.93  E-value=4.3e-10  Score=97.30  Aligned_cols=60  Identities=25%  Similarity=0.657  Sum_probs=52.3

Q ss_pred             CCeeccccccccccCceec-cCCCcchHHhHHhcC-----CCCCCCCCccc---chhhhHHHHHHHHHHh
Q 016258           88 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK-----DCPLCGADIEK---IEADTTLQDVVDRFIE  148 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~-----~CP~C~~~~~~---~~~n~~l~~~v~~~~~  148 (392)
                      ..+.|+||++.+. +|+++ +|||+||..||..|+     .||.|+..+..   +.+|..+.++++.+..
T Consensus        53 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~  121 (165)
T 2ckl_B           53 SELMCPICLDMLK-NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP  121 (165)
T ss_dssp             HHHBCTTTSSBCS-SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred             CCCCCcccChHhh-CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence            4689999999999 78776 999999999999983     49999998854   8899999999998864

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=1.1e-09  Score=81.25  Aligned_cols=44  Identities=32%  Similarity=0.831  Sum_probs=39.7

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC-------CCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-------~CP~C~~~~~~  132 (392)
                      +.+.|+||++.+. +|++++|||.||..||..|+       .||.||..+..
T Consensus        19 ~~~~C~IC~~~~~-~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           19 EEVICPICLDILQ-KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCBCTTTCSBCS-SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             cCCEeccCCcccC-CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            5689999999988 99999999999999999996       49999987754

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.91  E-value=2.8e-10  Score=80.08  Aligned_cols=44  Identities=36%  Similarity=0.792  Sum_probs=39.3

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhc-CCCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF-KDCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-~~CP~C~~~~~~  132 (392)
                      +.+.|+||++.+. +|++++|||+||..||..| ..||.||..+..
T Consensus         5 ~~~~C~IC~~~~~-~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~~   49 (56)
T 1bor_A            5 QFLRCQQCQAEAK-CPKLLPCLHTLCSGCLEASGMQCPICQAPWPL   49 (56)
T ss_dssp             CCSSCSSSCSSCB-CCSCSTTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred             cCCCceEeCCccC-CeEEcCCCCcccHHHHccCCCCCCcCCcEeec
Confidence            5689999999988 8999999999999999887 469999987654

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.90  E-value=2.9e-10  Score=86.75  Aligned_cols=53  Identities=26%  Similarity=0.706  Sum_probs=44.1

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhc----------CCCCCCCCCccc--chhhhHHHH
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF----------KDCPLCGADIEK--IEADTTLQD  141 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----------~~CP~C~~~~~~--~~~n~~l~~  141 (392)
                      +.+.|+||++.+. +|++++|||+||..||..|          ..||.|+..+..  +.+|..+.+
T Consensus        18 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~   82 (85)
T 2ecw_A           18 EEVTCPICLELLK-EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN   82 (85)
T ss_dssp             TTTSCTTTCSCCS-SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred             cCCCCcCCChhhC-cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence            5689999999988 8999999999999999886          259999998875  666655443

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=98.89  E-value=8e-10  Score=82.37  Aligned_cols=43  Identities=30%  Similarity=0.821  Sum_probs=38.7

Q ss_pred             CCeeccccccccccCceecc-CCCcchHHhHHhcC------CCCCCCCCcc
Q 016258           88 GPLSCMICQALLFECSKCTP-CSHVYCKACISRFK------DCPLCGADIE  131 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~-C~h~fC~~Ci~~~~------~CP~C~~~~~  131 (392)
                      +.+.|+||++++. +|++++ |||+||..||..|+      .||.||..+.
T Consensus        14 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           14 DELLCLICKDIMT-DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             GGGSCSSSCCCCT-TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             CCCCCcCCChHHh-CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            5799999999998 899999 99999999999983      6999998654

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.89  E-value=1.1e-09  Score=81.11  Aligned_cols=44  Identities=32%  Similarity=0.810  Sum_probs=39.1

Q ss_pred             CCeeccccccccccCceec-cCCCcchHHhHHhcC----CCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECSKCT-PCSHVYCKACISRFK----DCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~----~CP~C~~~~~~  132 (392)
                      +.+.|+||++.+. +|+++ +|||+||..||..|+    .||.||..+..
T Consensus        14 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (72)
T 2djb_A           14 PYILCSICKGYLI-DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ   62 (72)
T ss_dssp             GGGSCTTTSSCCS-SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred             CCCCCCCCChHHH-CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence            5699999999998 78876 999999999999984    69999998765

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.88  E-value=9.3e-08  Score=86.65  Aligned_cols=170  Identities=17%  Similarity=0.150  Sum_probs=129.0

Q ss_pred             hhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHH
Q 016258          196 AQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTL  275 (392)
Q Consensus       196 ~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~l  275 (392)
                      .|+++.|...+..+.+.....+...      -+.....+..++.++...|++..|+.+++++......+.+..   ....
T Consensus        14 ~~~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~   84 (283)
T 3edt_B           14 LVPRGSAVPLCKQALEDLEKTSGHD------HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD---HPAV   84 (283)
T ss_dssp             CSCSSSHHHHHHHHHHHHHHHHCSS------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT---CHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc---chHH
Confidence            4556666666665544443332211      133455677788888889999999999999877766553322   2234


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258          276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  355 (392)
Q Consensus       276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e  355 (392)
                      ...+..+|.++...|++++|+.+|++++++.+.......      ...+..+.++|.++..+|++++|+.+|++++.+.+
T Consensus        85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  158 (283)
T 3edt_B           85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH------PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA  158 (283)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            568899999999999999999999999999877654322      25677889999999999999999999999999998


Q ss_pred             Hh--hcCCCchHHHHHHHHHHHHHHHH
Q 016258          356 SL--TLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       356 ~l--~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      ..  ..+|..+....+++.++..+|+.
T Consensus       159 ~~~~~~~~~~~~~~~~la~~~~~~g~~  185 (283)
T 3edt_B          159 TRLGPDDPNVAKTKNNLASCYLKQGKY  185 (283)
T ss_dssp             HHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence            88  55677778888899998877763

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=1.1e-09  Score=79.67  Aligned_cols=44  Identities=30%  Similarity=0.782  Sum_probs=39.4

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~  132 (392)
                      +.+.|+||++.+. +|++++|||+||..||..|+     .||.|+..+..
T Consensus        14 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           14 DKYKCEKCHLVLC-SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CCEECTTTCCEES-SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             cCCCCCCCChHhc-CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            5799999999988 89999999999999999984     49999987654

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=1.2e-09  Score=80.72  Aligned_cols=44  Identities=30%  Similarity=0.754  Sum_probs=39.4

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~  132 (392)
                      +.+.|+||++.+. +|+.++|||.||..||..|.    .||+||..+..
T Consensus        14 ~~~~C~IC~~~~~-~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           14 TVPECAICLQTCV-HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SCCBCSSSSSBCS-SEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCccCCcccC-CCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence            5689999999988 89999999999999999994    59999997764

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=3.5e-10  Score=86.29  Aligned_cols=52  Identities=27%  Similarity=0.733  Sum_probs=43.9

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhc----------CCCCCCCCCccc--chhhhHHH
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF----------KDCPLCGADIEK--IEADTTLQ  140 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----------~~CP~C~~~~~~--~~~n~~l~  140 (392)
                      +.+.|+||++.+. +|+.++|||+||..||..|          ..||.|+..+..  +.+|..+.
T Consensus        18 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~   81 (85)
T 2ecv_A           18 EEVTCPICLELLT-QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVA   81 (85)
T ss_dssp             CCCCCTTTCSCCS-SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCC
T ss_pred             CCCCCCCCCcccC-CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHH
Confidence            5689999999988 8999999999999999886          359999998875  66665543

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.86  E-value=3e-10  Score=95.68  Aligned_cols=52  Identities=21%  Similarity=0.538  Sum_probs=43.5

Q ss_pred             CCCCCCCC---cCCCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCc
Q 016258           78 FGYDAQSF---KIGPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADI  130 (392)
Q Consensus        78 ~~~~~~~~---~~~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~  130 (392)
                      .||+...+   ..+.+.|+||++++. +|++++|||+||..||..|+     .||.||..+
T Consensus        17 ~g~~~~~~~~~l~~~~~C~IC~~~~~-~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           17 PGFSKTLLGTKLEAKYLCSACRNVLR-RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             CSBCGGGTGGGCCGGGBCTTTCSBCS-SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred             CCcchhhhhccCCcCcCCCCCChhhc-CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence            36665555   225799999999999 99999999999999999994     599999864

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.86  E-value=2.4e-09  Score=97.67  Aligned_cols=62  Identities=19%  Similarity=0.312  Sum_probs=55.0

Q ss_pred             CCeeccccccccccCcee-ccCCCcchHHhHHhcC------CCCC--CCCCccc--chhhhHHHHHHHHHHhhc
Q 016258           88 GPLSCMICQALLFECSKC-TPCSHVYCKACISRFK------DCPL--CGADIEK--IEADTTLQDVVDRFIEGH  150 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~-~~C~h~fC~~Ci~~~~------~CP~--C~~~~~~--~~~n~~l~~~v~~~~~~~  150 (392)
                      ..+.||||+.+|. +|++ +.|||+||+.||..||      .||.  |+..+..  +.+|..|.++++.++...
T Consensus       180 ~el~CPIcl~~f~-DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r~  252 (267)
T 3htk_C          180 IELTCPITCKPYE-APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMKE  252 (267)
T ss_dssp             CCSBCTTTSSBCS-SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHHH
T ss_pred             eeeECcCccCccc-CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHHH
Confidence            4799999999999 8987 5999999999999986      3999  9998776  999999999999887654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.86  E-value=1.5e-08  Score=102.55  Aligned_cols=143  Identities=8%  Similarity=0.010  Sum_probs=112.3

Q ss_pred             HHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHH-hCCCCChhHH
Q 016258          194 FRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLM-KLPMDDLEII  272 (392)
Q Consensus       194 ~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~-~L~~~~~e~~  272 (392)
                      ..+|++++|...+..+.+.....+      ...++.....+..++.++..+|++.+|.++++++.+... .+++.++   
T Consensus       320 ~~qg~~~eA~~l~~~aL~~~~~~l------g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp---  390 (490)
T 3n71_A          320 RSEGLYHEVVKLCRECLEKQEPVF------ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA---  390 (490)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHTTTB------CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH---
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH---
Confidence            356777777666543322211111      124566677888999999899999999999999976655 5666555   


Q ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258          273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  352 (392)
Q Consensus       273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~  352 (392)
                       .+..++++||.++..+|++++|+.+|+++|++++..++.+..      +++..+++|+.++..++.++.|...|.++.+
T Consensus       391 -~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp------~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          391 -QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP------ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             457799999999999999999999999999999998876554      7788889999999999999999999988754

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.82  E-value=1.1e-09  Score=81.56  Aligned_cols=44  Identities=30%  Similarity=0.680  Sum_probs=40.8

Q ss_pred             CCeeccccccccccCceeccCCCc-chHHhHHhcCCCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~~~CP~C~~~~~~  132 (392)
                      +.+.|+||++.+. +++.++|||. ||..|+..|..||.||..+..
T Consensus        23 ~~~~C~iC~~~~~-~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~   67 (74)
T 4ic3_A           23 EEKLCKICMDRNI-AIVFVPCGHLVTCKQCAEAVDKCPMCYTVITF   67 (74)
T ss_dssp             HHTBCTTTSSSBC-CEEEETTCCBCCCHHHHTTCSBCTTTCCBCSE
T ss_pred             cCCCCCCCCCCCC-CEEEcCCCChhHHHHhhhcCccCCCcCcCccC
Confidence            3689999999988 9999999999 999999999999999998775

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.81  E-value=1.8e-09  Score=78.27  Aligned_cols=44  Identities=25%  Similarity=0.739  Sum_probs=38.0

Q ss_pred             CCeecccccc-ccccCc----eeccCCCcchHHhHHhc-----CCCCCCCCCccc
Q 016258           88 GPLSCMICQA-LLFECS----KCTPCSHVYCKACISRF-----KDCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~-~~~~~p----~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~  132 (392)
                      +++.|+||++ ++. +|    ++++|||+||..||..|     ..||.|+..+..
T Consensus         2 ~~~~C~IC~~~~~~-~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   55 (65)
T 1g25_A            2 DDQGCPRCKTTKYR-NPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHH-CSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCcCCcCCCCccC-CCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence            4689999999 887 66    57899999999999998     359999998765

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.80  E-value=1.2e-09  Score=84.11  Aligned_cols=44  Identities=27%  Similarity=0.716  Sum_probs=39.2

Q ss_pred             CCeeccccccccccC----ceeccCCCcchHHhHHhc-------CCCCCCCCCccc
Q 016258           88 GPLSCMICQALLFEC----SKCTPCSHVYCKACISRF-------KDCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~----p~~~~C~h~fC~~Ci~~~-------~~CP~C~~~~~~  132 (392)
                      +.+.|+||++.+. +    |++++|||.||..||..|       ..||.||..+..
T Consensus        14 ~~~~C~IC~~~~~-~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A           14 EVLECPICMESFT-EEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI   68 (88)
T ss_dssp             SCCBCTTTCCBCC-TTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred             CCCCCccCCcccc-ccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence            5689999999988 6    999999999999999998       359999997754

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.79  E-value=3.7e-09  Score=75.99  Aligned_cols=38  Identities=34%  Similarity=0.903  Sum_probs=34.7

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC-------CCCCC
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLC  126 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-------~CP~C  126 (392)
                      +.+.|+||++.+. +|++++|||+||..||..|+       .||.|
T Consensus        19 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           19 EEVICPICLDILQ-KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCBCTTTCSBCS-SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             cCCCCCcCCchhC-CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            5799999999988 89999999999999999984       49987

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.79  E-value=2.6e-09  Score=86.72  Aligned_cols=56  Identities=27%  Similarity=0.635  Sum_probs=45.3

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc---chhhhHHHHHHH
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK---IEADTTLQDVVD  144 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~---~~~n~~l~~~v~  144 (392)
                      +.+.|+||++.+. +|++++|||+||..||..|+     .||.|+..+..   ..++..+.+++.
T Consensus        22 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~   85 (116)
T 1rmd_A           22 KSISCQICEHILA-DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILN   85 (116)
T ss_dssp             HHTBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHH
T ss_pred             CCCCCCCCCcHhc-CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHH
Confidence            4689999999998 99999999999999999883     59999999876   334445444443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.78  E-value=5e-07  Score=87.25  Aligned_cols=172  Identities=11%  Similarity=0.008  Sum_probs=133.7

Q ss_pred             HHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCC
Q 016258          189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD  268 (392)
Q Consensus       189 ~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~  268 (392)
                      .++..+..|++++|...+.......    ...++    -+.....+..+|.++..+|++..|+.+++++.........  
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~----~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~--  178 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKL----IFVKD----RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA--  178 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTG----GGCCC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST--
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHH----hhCCC----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--
Confidence            4456678899999988775332110    11111    1234567778888888999999999999999888777644  


Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016258          269 LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ  348 (392)
Q Consensus       269 ~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~  348 (392)
                        ....+...+..||.++...|++++|+.+|++++++.....        ....++..+.++|.++..+|++++|+.+|+
T Consensus       179 --~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~  248 (383)
T 3ulq_A          179 --YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--------QPQLMGRTLYNIGLCKNSQSQYEDAIPYFK  248 (383)
T ss_dssp             --THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             --chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence              2345667899999999999999999999999999877541        123567789999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          349 EAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       349 eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      +++.+.+.....|..+....+++.++..+|+.
T Consensus       249 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  280 (383)
T 3ulq_A          249 RAIAVFEESNILPSLPQAYFLITQIHYKLGKI  280 (383)
T ss_dssp             HHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhhccchhHHHHHHHHHHHHHHCCCH
Confidence            99999988755477788888899888877753

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.77  E-value=2.3e-09  Score=93.16  Aligned_cols=58  Identities=28%  Similarity=0.534  Sum_probs=49.4

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc--chhhhHHHHHHHHH
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRF  146 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~~v~~~  146 (392)
                      +.+.|+||++++. +|++++|||+||..||..|+     .||.||..+..  +.++..+.+++..+
T Consensus        17 ~~~~C~IC~~~~~-~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l   81 (170)
T 3hcs_A           17 SKYECPICLMALR-EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL   81 (170)
T ss_dssp             GGGBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred             CCCCCCCCChhhc-CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence            5799999999999 99999999999999999983     69999998877  56677776666543

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.77  E-value=3.9e-09  Score=77.11  Aligned_cols=43  Identities=35%  Similarity=0.816  Sum_probs=38.1

Q ss_pred             CCeeccccccccccCc-------eeccCCCcchHHhHHhc----CCCCCCCCCcc
Q 016258           88 GPLSCMICQALLFECS-------KCTPCSHVYCKACISRF----KDCPLCGADIE  131 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~  131 (392)
                      +.+.|+||++.+. ++       ++++|||.||..||..|    ..||+||..+.
T Consensus        14 ~~~~C~IC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   67 (69)
T 2ea6_A           14 GTVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN   67 (69)
T ss_dssp             CCCCCTTTCCCHH-HHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             CCCCCcccCcccc-ccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence            5689999999988 55       89999999999999999    36999998765

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=5.2e-09  Score=78.04  Aligned_cols=46  Identities=24%  Similarity=0.764  Sum_probs=38.7

Q ss_pred             cCCCeeccccccccccCc---eeccCCCcchHHhHHhc----CCCCCCCCCccc
Q 016258           86 KIGPLSCMICQALLFECS---KCTPCSHVYCKACISRF----KDCPLCGADIEK  132 (392)
Q Consensus        86 ~~~~~~C~iC~~~~~~~p---~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~  132 (392)
                      ..+...|+||++.+. .+   +.++|+|.||..||..|    ..||+||..+..
T Consensus        20 ~~~~~~C~IC~~~~~-~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           20 QSEQTLCVVCMCDFE-SRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             SSSCCEETTTTEECC-BTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             cCCCCCCeECCcccC-CCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence            346789999999987 44   78899999999999999    469999987653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.74  E-value=2.2e-07  Score=80.56  Aligned_cols=161  Identities=17%  Similarity=0.104  Sum_probs=115.7

Q ss_pred             HHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHH
Q 016258          193 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEII  272 (392)
Q Consensus       193 a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~  272 (392)
                      ++..|++++|...+...        ...+      ......+..++.++...|++..++.+++++......+..     .
T Consensus         2 ~~~~g~~~~A~~~~~~~--------~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~   62 (203)
T 3gw4_A            2 AFEAHDYALAERQAQAL--------LAHP------ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-----H   62 (203)
T ss_dssp             -----CHHHHHHHHHHH--------HTST------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-----H
T ss_pred             ccccccHHHHHHHHHHh--------cCCh------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC-----c
Confidence            35678888888833211        0111      023456677888888899999999999999888777654     3


Q ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258          273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  352 (392)
Q Consensus       273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~  352 (392)
                      ......+.++|.++...|++++|+.+|++++++.+...    +   .....+..+.++|.++..+|++++|+.+|++++.
T Consensus        63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (203)
T 3gw4_A           63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP----E---DPLAASANAYEVATVALHFGDLAGARQEYEKSLV  135 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----C---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----c---cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            44567899999999999999999999999999876421    1   1124567788999999999999999999999999


Q ss_pred             HHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          353 RLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       353 i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      +.+........+....+++.++..+|+
T Consensus       136 ~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A          136 YAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            987764333344456677777766654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.73  E-value=1.3e-06  Score=80.49  Aligned_cols=180  Identities=17%  Similarity=0.161  Sum_probs=135.2

Q ss_pred             hhhHHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCC
Q 016258          186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP  265 (392)
Q Consensus       186 l~c~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~  265 (392)
                      +...+...+..|++++|...+.............  .    -+.....+..++.++...|++..|+.+++.+......+.
T Consensus        30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  103 (311)
T 3nf1_A           30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGH--D----HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL  103 (311)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCS--S----SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC--C----CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            4444556778999999999887554433222100  0    123345667788888889999999999998877665542


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHH
Q 016258          266 MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVD  345 (392)
Q Consensus       266 ~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~  345 (392)
                      ...   ..........++.++...|++++|+.+|++++++.+.......      ...+..+.++|.++..+|++++|+.
T Consensus       104 ~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~  174 (311)
T 3nf1_A          104 GKD---HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH------PDVAKQLNNLALLCQNQGKYEEVEY  174 (311)
T ss_dssp             CTT---CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             CCC---ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            211   1334568899999999999999999999999998877643332      2567788899999999999999999


Q ss_pred             HHHHHHHHHHHh--hcCCCchHHHHHHHHHHHHHHHH
Q 016258          346 GFQEAIKRLESL--TLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       346 ~~~eal~i~e~l--~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      +|++++.+.+..  ..+|........++.++..+|+.
T Consensus       175 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  211 (311)
T 3nf1_A          175 YYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKF  211 (311)
T ss_dssp             HHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCH
Confidence            999999999887  55677777888888888877753

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=98.73  E-value=3e-09  Score=78.32  Aligned_cols=44  Identities=34%  Similarity=0.802  Sum_probs=39.1

Q ss_pred             CCeeccccccccccCc-------eeccCCCcchHHhHHhc----CCCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECS-------KCTPCSHVYCKACISRF----KDCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~  132 (392)
                      +.+.|+||++.+. +|       +.++|||.||..||..|    ..||.||..+..
T Consensus         9 ~~~~C~IC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (71)
T 3ng2_A            9 GTVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   63 (71)
T ss_dssp             TCCBCTTTCCBHH-HHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred             CCCCCcccChhhh-ccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence            5689999999988 66       89999999999999998    369999998765

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.72  E-value=9.3e-07  Score=79.92  Aligned_cols=155  Identities=16%  Similarity=0.106  Sum_probs=114.4

Q ss_pred             hhHHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCC
Q 016258          187 VQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM  266 (392)
Q Consensus       187 ~c~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~  266 (392)
                      ...+...+..|++++|...+..........+.  .+    -+.....+..++.++...|++..|+.+++.+.....++..
T Consensus        47 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  120 (283)
T 3edt_B           47 NILALVYRDQNKYKEAAHLLNDALAIREKTLG--KD----HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG  120 (283)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--TT----CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC--Cc----chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence            33444667889999998888644333222110  00    1334456777888888899999999999999777665533


Q ss_pred             CChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHH
Q 016258          267 DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG  346 (392)
Q Consensus       267 ~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~  346 (392)
                      ...   ........++|.++...|++++|+.+|++++++.+.......      ...+..+.++|.++..+|++++|+.+
T Consensus       121 ~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~  191 (283)
T 3edt_B          121 KFH---PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD------PNVAKTKNNLASCYLKQGKYQDAETL  191 (283)
T ss_dssp             TTC---HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC------HHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCC---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            221   234567899999999999999999999999998776543222      25677888999999999999999999


Q ss_pred             HHHHHHHHHH
Q 016258          347 FQEAIKRLES  356 (392)
Q Consensus       347 ~~eal~i~e~  356 (392)
                      |++++.+...
T Consensus       192 ~~~~l~~~~~  201 (283)
T 3edt_B          192 YKEILTRAHE  201 (283)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998665

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.71  E-value=9e-09  Score=72.50  Aligned_cols=38  Identities=39%  Similarity=0.928  Sum_probs=34.2

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC-------CCCCC
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLC  126 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-------~CP~C  126 (392)
                      +.+.|+||++.+. +|++++|||+||..||..|+       .||.|
T Consensus        14 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           14 VEASCSVCLEYLK-EPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCBCSSSCCBCS-SCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cCCCCccCCcccC-ccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            5689999999988 89999999999999999992       49987

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.71  E-value=5.6e-08  Score=96.83  Aligned_cols=105  Identities=11%  Similarity=-0.037  Sum_probs=88.2

Q ss_pred             hHHHHHHHHHHHHHHHHH--hccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHH
Q 016258          270 EIIHTLSVSLNKIGDLKY--YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF  347 (392)
Q Consensus       270 e~~~~ls~~~~~lg~l~~--~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~  347 (392)
                      .++..+..+...+.....  ..|+|++|+..|+++|++++.++....      .+++.++++||.+|..+|+|++|+.+|
T Consensus       290 ~v~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~H------p~~a~~~~nLa~~y~~~g~~~eA~~~~  363 (433)
T 3qww_A          290 AIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSN------VYMLHMMYQAMGVCLYMQDWEGALKYG  363 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTS------HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhc------hHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence            344444445555544443  358999999999999999988775544      389999999999999999999999999


Q ss_pred             HHHHHHHHHh--hcCCCchHHHHHHHHHHHHHHHH
Q 016258          348 QEAIKRLESL--TLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       348 ~eal~i~e~l--~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      ++++.+++++  .+||+.+..+.+++.+|..+|+.
T Consensus       364 ~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~  398 (433)
T 3qww_A          364 QKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENK  398 (433)
T ss_dssp             HHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCH
Confidence            9999999998  89999999999999999998865

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.71  E-value=9.2e-07  Score=72.67  Aligned_cols=137  Identities=16%  Similarity=0.179  Sum_probs=110.1

Q ss_pred             HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258          231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV  310 (392)
Q Consensus       231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~  310 (392)
                      ...+..++..+...|++..++.+++++.........     ...+......+|.++...|++++|+.+|++++++.....
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~   83 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK   83 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-----chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            445667788887889999999999998877766543     344567889999999999999999999999999876531


Q ss_pred             hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      .        ....+..+.++|.++..+|++++|+.+|++++.+.+.....+..+....+++.++..+|+.
T Consensus        84 ~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  145 (164)
T 3ro3_A           84 D--------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH  145 (164)
T ss_dssp             C--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             C--------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCH
Confidence            1        2245667889999999999999999999999999988755555666777888888777653

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.71  E-value=5.9e-07  Score=84.55  Aligned_cols=165  Identities=15%  Similarity=0.080  Sum_probs=118.1

Q ss_pred             HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258          192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  271 (392)
Q Consensus       192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~  271 (392)
                      .....|++++|...+....+....    .. +   -......+..++.++..+|++..|+.+++++..+...++.     
T Consensus        45 ~~~~~g~~~~A~~~~~~al~~~~~----~~-~---~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-----  111 (307)
T 2ifu_A           45 AFKNAKQLEQAKDAYLQEAEAHAN----NR-S---LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT-----  111 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH----TT-C---HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-----
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHH----cC-C---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-----
Confidence            344578888888877544332211    01 0   0122446667788887889999999999999888776654     


Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                      .......+.+||.++.. |++++|+.+|++++++.....        .....+..+.++|.++..+|++++|+.+|++++
T Consensus       112 ~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~--------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  182 (307)
T 2ifu_A          112 PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE--------RLRQAAELIGKASRLLVRQQKFDEAAASLQKEK  182 (307)
T ss_dssp             HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC--------ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            23456789999999988 999999999999999876521        112456788999999999999999999999999


Q ss_pred             HHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258          352 KRLESLTLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       352 ~i~e~l~~~p~~a~~l~~~~~~~~~l~  378 (392)
                      .+.......+..+....+++.++..+|
T Consensus       183 ~~~~~~~~~~~~~~~~~~~g~~~~~~g  209 (307)
T 2ifu_A          183 SMYKEMENYPTCYKKCIAQVLVQLHRA  209 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCChhHHHHHHHHHHHHHHHcC
Confidence            998876333333334555555555433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.71  E-value=1.2e-06  Score=81.68  Aligned_cols=168  Identities=9%  Similarity=-0.066  Sum_probs=123.2

Q ss_pred             HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258          192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  271 (392)
Q Consensus       192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~  271 (392)
                      ..+..|++++|...+...       +......... ......+..+|..+...+++..|+.+++.+........    ++
T Consensus        84 ~~~~~~~y~~a~~~~~~~-------l~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~----~~  151 (293)
T 3u3w_A           84 MLCKQKRYKEIYNKVWNE-------LKKEEYHPEF-QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI----DV  151 (293)
T ss_dssp             HHHHTTCHHHHHHHHHHH-------HTTCCCCHHH-HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS----CT
T ss_pred             HHHHHhhHHHHHHHHHHH-------hccccCChHH-HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc----cH
Confidence            567889999998877522       1122222221 11122333466666567788999999988866322222    12


Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                       .....++++||.++...|++++|+.+|++++++.+....       .....+..+.++|.++..+|++++|+.+|++++
T Consensus       152 -~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al  223 (293)
T 3u3w_A          152 -YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-------NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             -THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence             134457899999999999999999999999997665311       234667789999999999999999999999999


Q ss_pred             HHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          352 KRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       352 ~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      .+.......+..+.+..+++.++..+|+
T Consensus       224 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~  251 (293)
T 3u3w_A          224 EISCRINSMALIGQLYYQRGECLRKLEY  251 (293)
T ss_dssp             HHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence            9999887777888889999999998884

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.69  E-value=4.5e-09  Score=79.32  Aligned_cols=43  Identities=30%  Similarity=0.923  Sum_probs=40.4

Q ss_pred             CeeccccccccccCceeccCCCc-chHHhHHhcCCCCCCCCCccc
Q 016258           89 PLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK  132 (392)
Q Consensus        89 ~~~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~~~CP~C~~~~~~  132 (392)
                      ...|+||++.+. +++.+||||. ||..|+..++.||.||..+..
T Consensus        18 ~~~C~IC~~~~~-~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~   61 (79)
T 2yho_A           18 AMLCMVCCEEEI-NSTFCPCGHTVCCESCAAQLQSCPVCRSRVEH   61 (79)
T ss_dssp             HTBCTTTSSSBC-CEEEETTCBCCBCHHHHTTCSBCTTTCCBCCE
T ss_pred             CCEeEEeCcccC-cEEEECCCCHHHHHHHHHhcCcCCCCCchhhC
Confidence            578999999988 9999999999 999999999999999998876

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.68  E-value=1e-06  Score=84.99  Aligned_cols=171  Identities=13%  Similarity=0.050  Sum_probs=131.3

Q ss_pred             HHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCC
Q 016258          189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD  268 (392)
Q Consensus       189 ~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~  268 (392)
                      .++..+..|++++|...+.......    ...++    -+.....+..+|.++..+|++..|+.+++++.........  
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~----~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--  176 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKEL----PFVSD----DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL--  176 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTG----GGCCC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT--
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHH----hhCCC----hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC--
Confidence            3456678899999988875332111    11111    1344567788899988999999999999999888776543  


Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016258          269 LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ  348 (392)
Q Consensus       269 ~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~  348 (392)
                        ....+......||.++...|++++|+.+|++++++.+....        ...++..+.++|.++..+|++++|+.+|+
T Consensus       177 --~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~  246 (378)
T 3q15_A          177 --YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN--------DRFIAISLLNIANSYDRSGDDQMAVEHFQ  246 (378)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             --chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence              23356778999999999999999999999999998765311        12567789999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          349 EAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       349 eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      +++.+.+.. .+|..+..+.+++.++..+|+.
T Consensus       247 ~al~~~~~~-~~~~~~~~~~~la~~~~~~g~~  277 (378)
T 3q15_A          247 KAAKVSREK-VPDLLPKVLFGLSWTLCKAGQT  277 (378)
T ss_dssp             HHHHHHHHH-CGGGHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhh-CChhHHHHHHHHHHHHHHCCCH
Confidence            999998877 3455577788888888877653

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.68  E-value=1.1e-08  Score=76.93  Aligned_cols=45  Identities=27%  Similarity=0.653  Sum_probs=37.6

Q ss_pred             CCeecccccccccc-Cceecc--CCCcchHHhHHhcC-----CCCCCCCCccc
Q 016258           88 GPLSCMICQALLFE-CSKCTP--CSHVYCKACISRFK-----DCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~-~p~~~~--C~h~fC~~Ci~~~~-----~CP~C~~~~~~  132 (392)
                      +++.|+||++.+.. +++.++  |||+||..|+..+|     .||.||..+..
T Consensus        10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~   62 (78)
T 1e4u_A           10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   62 (78)
T ss_dssp             CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred             cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence            57999999998752 456665  99999999999986     59999998765

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.66  E-value=5.5e-09  Score=75.10  Aligned_cols=44  Identities=32%  Similarity=0.715  Sum_probs=38.4

Q ss_pred             CCeeccccccccccCc-------eeccCCCcchHHhHHhcC----CCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~  132 (392)
                      +.+.|+||++.+. ++       +.++|||.||..||..|.    .||.||..+..
T Consensus         2 ~~~~C~IC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   56 (64)
T 2xeu_A            2 AMVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   56 (64)
T ss_dssp             CCCBCTTTCCBHH-HHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred             CCCCCCccChhhh-CccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence            4588999999987 55       899999999999999984    69999998764

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.66  E-value=8.8e-09  Score=75.15  Aligned_cols=45  Identities=36%  Similarity=0.817  Sum_probs=39.0

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhc----CCCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~  132 (392)
                      ....|+||++.+.+.++.++|||.||..|+..|    ..||.||..+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            457899999998844699999999999999998    469999998765

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.66  E-value=8.9e-09  Score=76.85  Aligned_cols=44  Identities=30%  Similarity=0.680  Sum_probs=40.4

Q ss_pred             CCeeccccccccccCceeccCCCc-chHHhHHhcCCCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~~~CP~C~~~~~~  132 (392)
                      +.+.|+||++.+. +|+.++|||. ||..|+.....||.||..+..
T Consensus        24 ~~~~C~IC~~~~~-~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           24 EEKLCKICMDRNI-AIVFVPCGHLVTCKQCAEAVDKCPMCYTVITF   68 (75)
T ss_dssp             HHHSCSSSCSSCC-CBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCC
T ss_pred             CCCCCCcCCCCCC-CEEEecCCCHHHHHHHhhCCCCCccCCceecC
Confidence            3588999999988 9999999999 999999999999999998765

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.65  E-value=2.8e-07  Score=86.77  Aligned_cols=170  Identities=11%  Similarity=0.063  Sum_probs=118.8

Q ss_pred             HHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHH
Q 016258          193 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEII  272 (392)
Q Consensus       193 a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~  272 (392)
                      ||..|++.+|...+..........+-......   ..-...+...+.++...|++..|+..+..+.+...+++.     .
T Consensus         1 ~~~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~---~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~   72 (307)
T 2ifu_A            1 AIAAQKISEAHEHIAKAEKYLKTSFMKWKPDY---DSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS-----L   72 (307)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHCCCSSSCSCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----H
T ss_pred             CCccchHHHHHHHHHHHHHHccccccCCCCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-----H
Confidence            45678888888877644433221000000111   111112333455676789999999999999888777754     3


Q ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258          273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  352 (392)
Q Consensus       273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~  352 (392)
                      ......+.++|.++..+|++++|+.+|++++++.+...        .....+..+.++|.++.. |++++|+.+|++++.
T Consensus        73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--------~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~  143 (307)
T 2ifu_A           73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG--------TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAA  143 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--------CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence            35567899999999999999999999999999875421        122467789999999999 999999999999999


Q ss_pred             HHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          353 RLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       353 i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      +.+........+..+.+++.++..+|+
T Consensus       144 ~~~~~~~~~~~~~~~~~lg~~~~~~g~  170 (307)
T 2ifu_A          144 VFENEERLRQAAELIGKASRLLVRQQK  170 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhCCChhHHHHHHHHHHHHHHHcCC
Confidence            998763333445667778887776664

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.64  E-value=1.3e-08  Score=70.81  Aligned_cols=44  Identities=27%  Similarity=0.760  Sum_probs=37.9

Q ss_pred             CCeecccccccccc---CceeccCCCcchHHhHHhc----CCCCCCCCCcc
Q 016258           88 GPLSCMICQALLFE---CSKCTPCSHVYCKACISRF----KDCPLCGADIE  131 (392)
Q Consensus        88 ~~~~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~  131 (392)
                      ....|+||++.+.+   .++.++|+|.||..||..|    ..||+||..+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            45789999999863   3899999999999999999    46999998764

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.63  E-value=2.2e-08  Score=73.27  Aligned_cols=45  Identities=36%  Similarity=0.905  Sum_probs=38.5

Q ss_pred             CCeeccccccccc--cCceeccCCCcchHHhHHhc----CCCCCCCCCccc
Q 016258           88 GPLSCMICQALLF--ECSKCTPCSHVYCKACISRF----KDCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~--~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~  132 (392)
                      ....|+||++.+.  +.++.++|+|.||..||..|    ..||.||..+..
T Consensus        13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA   63 (69)
T ss_dssp             CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred             CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence            4688999999875  25788999999999999998    459999998765

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.63  E-value=2.6e-06  Score=73.65  Aligned_cols=154  Identities=20%  Similarity=0.183  Sum_probs=116.2

Q ss_pred             hhhHHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCC
Q 016258          186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP  265 (392)
Q Consensus       186 l~c~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~  265 (392)
                      +...+...+..|++++|...+.........    ..    .-+.....+..++.++..+|++..++.+++++.......+
T Consensus        29 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  100 (203)
T 3gw4_A           29 RFMLGYVYAFMDRFDEARASFQALQQQAQK----SG----DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP  100 (203)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----TC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHH----cC----CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence            334445667889999998877644332211    11    1123345667788888889999999999999988877766


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHH
Q 016258          266 MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVD  345 (392)
Q Consensus       266 ~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~  345 (392)
                      ..    .........++|.++...|++++|+.+|++++++.+...        .....+..+.++|.++..+|++++|+.
T Consensus       101 ~~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~  168 (203)
T 3gw4_A          101 ED----PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD--------DQVAIACAFRGLGDLAQQEKNLLEAQQ  168 (203)
T ss_dssp             CC----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cc----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc--------chHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            32    223556889999999999999999999999998865421        123456778899999999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 016258          346 GFQEAIKRLESLTL  359 (392)
Q Consensus       346 ~~~eal~i~e~l~~  359 (392)
                      +|++++.+.+.+..
T Consensus       169 ~~~~al~~~~~~~~  182 (203)
T 3gw4_A          169 HWLRARDIFAELED  182 (203)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCC
Confidence            99999999998843

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.62  E-value=1.7e-06  Score=82.72  Aligned_cols=170  Identities=14%  Similarity=0.121  Sum_probs=129.7

Q ss_pred             HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258          192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  271 (392)
Q Consensus       192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~  271 (392)
                      ..+..|++++|...+..+......    .+.    -......+..++.++...|++..|+.+++++.........     
T Consensus       196 ~~~~~g~~~~A~~~~~~al~~~~~----~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----  262 (406)
T 3sf4_A          196 THYLLGNFRDAVIAHEQRLLIAKE----FGD----KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-----  262 (406)
T ss_dssp             HHHHHTBHHHHHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHccCHHHHHHHHHHHHHHHHh----cCC----cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC-----
Confidence            445667777777766533322111    010    1122336667788888899999999999999877776643     


Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                      .......+..+|.++...|++++|+.+|++++++......        ....+..+..+|.++..+|++++|+.+|++++
T Consensus       263 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  334 (406)
T 3sf4_A          263 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND--------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  334 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC--------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3445678899999999999999999999999998765321        23557788899999999999999999999999


Q ss_pred             HHHHHhhcCCCchHHHHHHHHHHHHHHHHhh
Q 016258          352 KRLESLTLKPEEAGLEQRRLSVLEFLNNQLS  382 (392)
Q Consensus       352 ~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~~  382 (392)
                      .+.+.+...+..+..+..++.++..+|+...
T Consensus       335 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  365 (406)
T 3sf4_A          335 EISREVGDKSGELTARLNLSDLQMVLGLSYS  365 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence            9999986667778888999999999987643

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.61  E-value=1.1e-08  Score=79.27  Aligned_cols=43  Identities=28%  Similarity=0.717  Sum_probs=37.5

Q ss_pred             CCeeccccccccccC---ceeccCCCcchHHhHHhcC----CCCCCCCCcc
Q 016258           88 GPLSCMICQALLFEC---SKCTPCSHVYCKACISRFK----DCPLCGADIE  131 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~---p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~  131 (392)
                      +...|+||++.+. .   ++.++|+|.||..||..|.    .||+||..+.
T Consensus        39 ~~~~C~IC~~~~~-~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~   88 (91)
T 2l0b_A           39 QEMCCPICCSEYV-KGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP   88 (91)
T ss_dssp             SCSEETTTTEECC-TTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred             CCCCCcccChhhc-CCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence            5689999999877 5   7789999999999999993    4999998765

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.61  E-value=1.8e-08  Score=75.61  Aligned_cols=45  Identities=24%  Similarity=0.734  Sum_probs=37.6

Q ss_pred             CCeecccccccccc--CceeccCCCcchHHhHHhcC----CCCCCCCCccc
Q 016258           88 GPLSCMICQALLFE--CSKCTPCSHVYCKACISRFK----DCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~--~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~  132 (392)
                      ..+.|+||++.+.+  ..+.++|+|.||..||..|+    .||+||..+..
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   64 (78)
T 2ect_A           14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG   64 (78)
T ss_dssp             SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence            56899999999873  23667999999999999993    59999998765

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.60  E-value=2.3e-08  Score=69.59  Aligned_cols=44  Identities=27%  Similarity=0.754  Sum_probs=36.8

Q ss_pred             CCeecccccccccc--Cceecc-CCCcchHHhHHhcC----CCCCCCCCcc
Q 016258           88 GPLSCMICQALLFE--CSKCTP-CSHVYCKACISRFK----DCPLCGADIE  131 (392)
Q Consensus        88 ~~~~C~iC~~~~~~--~p~~~~-C~h~fC~~Ci~~~~----~CP~C~~~~~  131 (392)
                      +...|+||++.+.+  .++.++ |+|.||..||..|.    .||.||..+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            45789999999873  167776 99999999999994    4999998764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.60  E-value=1.7e-06  Score=80.73  Aligned_cols=165  Identities=13%  Similarity=0.048  Sum_probs=114.5

Q ss_pred             HHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHH
Q 016258          194 FRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIH  273 (392)
Q Consensus       194 ~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~  273 (392)
                      ...|++++|...+..+.+....    .. +.   +.....+..+|.++..+|++..|+.+++.+......++.     ..
T Consensus        48 ~~~g~~~~A~~~~~~al~~~~~----~~-~~---~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-----~~  114 (292)
T 1qqe_A           48 RLRKELNLAGDSFLKAADYQKK----AG-NE---DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-----FR  114 (292)
T ss_dssp             HHTTCTHHHHHHHHHHHHHHHH----TT-CH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHH----hC-CH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-----HH
Confidence            3578888888877644322111    01 00   122456677888888899999999999999888777654     33


Q ss_pred             HHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258          274 TLSVSLNKIGDLKYYG-GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  352 (392)
Q Consensus       274 ~ls~~~~~lg~l~~~~-g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~  352 (392)
                      .....+.+||.++... |++++|+.+|++++++.....        .....+..+.++|.++..+|++++|+..|++++.
T Consensus       115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~--------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  186 (292)
T 1qqe_A          115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--------SVALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4566899999999996 999999999999999876421        1123456788999999999999999999999887


Q ss_pred             HHHHhhc-CCCchHHHHHHHHHHHHHHH
Q 016258          353 RLESLTL-KPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       353 i~e~l~~-~p~~a~~l~~~~~~~~~l~~  379 (392)
                      +...... .........+++.++..+|+
T Consensus       187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~  214 (292)
T 1qqe_A          187 SSMGNRLSQWSLKDYFLKKGLCQLAATD  214 (292)
T ss_dssp             TTSSCTTTGGGHHHHHHHHHHHHHHTTC
T ss_pred             HHhcCCcccHHHHHHHHHHHHHHHHcCC
Confidence            5422200 01112245566666665554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.58  E-value=1.5e-06  Score=81.06  Aligned_cols=129  Identities=9%  Similarity=-0.049  Sum_probs=101.4

Q ss_pred             hhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 016258          238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP  317 (392)
Q Consensus       238 c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~  317 (392)
                      +.++...|++..|+..++.+.+...+++.     .......+.++|.++..+|++++|+.+|++++++.....       
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-------  111 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKAGN-----EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG-------  111 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC-------
Confidence            44556789999999999999888777654     334567899999999999999999999999999876532       


Q ss_pred             cchhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          318 SQVLDVAVSLAKVADVDRSI-GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       318 ~~~~dla~sl~~la~~~~~~-g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                       .....+..+.++|.++..+ |++++|+.+|++++.+..........+....+++.++..+|+
T Consensus       112 -~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~  173 (292)
T 1qqe_A          112 -QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ  173 (292)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             -CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC
Confidence             1234577899999999996 999999999999999988653222334556777777766654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.58  E-value=2.9e-06  Score=78.05  Aligned_cols=152  Identities=17%  Similarity=0.151  Sum_probs=110.8

Q ss_pred             HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258          190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL  269 (392)
Q Consensus       190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~  269 (392)
                      +...+..|++++|...+............  .+    -+.....+..++.++...|++..|+.+++.+......+.+.. 
T Consensus        76 a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-  148 (311)
T 3nf1_A           76 ALVYRDQNKYKDAANLLNDALAIREKTLG--KD----HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD-  148 (311)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHC--TT----CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHhC--CC----ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC-
Confidence            33556788899888877644333222111  00    133345667788888889999999999999877665542221 


Q ss_pred             hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016258          270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE  349 (392)
Q Consensus       270 e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e  349 (392)
                        .......+..+|.++...|++++|+.+|++++++.+.......      ...+..+..+|.++..+|++++|+.+|++
T Consensus       149 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~  220 (311)
T 3nf1_A          149 --HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD------PNVAKTKNNLASCYLKQGKFKQAETLYKE  220 (311)
T ss_dssp             --CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC------HHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             --ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence              1234567899999999999999999999999998766432221      25567788999999999999999999999


Q ss_pred             HHHHHHH
Q 016258          350 AIKRLES  356 (392)
Q Consensus       350 al~i~e~  356 (392)
                      ++.+...
T Consensus       221 al~~~~~  227 (311)
T 3nf1_A          221 ILTRAHE  227 (311)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998655

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.56  E-value=4.6e-06  Score=80.47  Aligned_cols=169  Identities=17%  Similarity=0.166  Sum_probs=126.0

Q ss_pred             hHHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCC
Q 016258          188 QQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMD  267 (392)
Q Consensus       188 c~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~  267 (392)
                      ..+...+..|++++|...+.....       ..+.+..   .....+..++.++...|++..|+.+++++......+.. 
T Consensus        53 ~~g~~~~~~g~~~~A~~~~~~al~-------~~~~~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-  121 (411)
T 4a1s_A           53 LEGERLCNAGDCRAGVAFFQAAIQ-------AGTEDLR---TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-  121 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH-------HCCSCHH---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHH-------hcccChh---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC-
Confidence            334477889999999988763322       1222221   12345677888888899999999999999888777644 


Q ss_pred             ChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCC--------
Q 016258          268 DLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGN--------  339 (392)
Q Consensus       268 ~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~--------  339 (392)
                          .......+..+|.++...|++++|+.+|++++++......        ....+..+.++|.++..+|+        
T Consensus       122 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~~~~~~  189 (411)
T 4a1s_A          122 ----RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD--------RLSEGRALYNLGNVYHAKGKHLGQRNPG  189 (411)
T ss_dssp             ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             ----chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc--------hHHHHHHHHHHHHHHHHcCcccccccch
Confidence                3455678999999999999999999999999998766421        22456778888888888888        


Q ss_pred             ---------HHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          340 ---------EDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       340 ---------~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                               +++|+.+|++++.+.+.+...+..+....+++.++..+|+
T Consensus       190 ~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  238 (411)
T 4a1s_A          190 KFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD  238 (411)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence                     8888888888888888775556666667777777766654

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=5.2e-08  Score=71.21  Aligned_cols=44  Identities=27%  Similarity=0.814  Sum_probs=40.7

Q ss_pred             CCeeccccccccccCceeccCCCc-chHHhHHhcCCCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~~~CP~C~~~~~~  132 (392)
                      +...|.||++... +++.+||||. ||..|+.....||.||..+..
T Consensus        14 ~~~~C~IC~~~~~-~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~   58 (68)
T 2ea5_A           14 NSKDCVVCQNGTV-NWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQE   58 (68)
T ss_dssp             CSSCCSSSSSSCC-CCEETTTTBCCSCTTHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCCcCcCCC-CEEEECCCChhhhHHHHhcCCCCCCCCcchhc
Confidence            4688999999988 9999999999 999999999999999998776

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.53  E-value=1.3e-05  Score=65.66  Aligned_cols=147  Identities=13%  Similarity=0.138  Sum_probs=110.9

Q ss_pred             HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258          190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL  269 (392)
Q Consensus       190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~  269 (392)
                      +...+..|++++|...+..........    .+    -......+..++.++...|++..++.+++.+.........   
T Consensus        16 ~~~~~~~~~~~~A~~~~~~al~~~~~~----~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---   84 (164)
T 3ro3_A           16 GNTHYLLGNFRDAVIAHEQRLLIAKEF----GD----KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---   84 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHH----TC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHh----CC----chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---
Confidence            335567888999988876444332221    10    0112346667888888899999999999999887776644   


Q ss_pred             hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016258          270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE  349 (392)
Q Consensus       270 e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e  349 (392)
                        ..........+|.++...|++++|+.+|++++++.+...        .....+..+..+|.++..+|++++|+.+|++
T Consensus        85 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  154 (164)
T 3ro3_A           85 --RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--------DRIGEGRACWSLGNAYTALGNHDQAMHFAEK  154 (164)
T ss_dssp             --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             --cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc--------chHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence              234466788999999999999999999999999866532        1235567788999999999999999999999


Q ss_pred             HHHHHHHh
Q 016258          350 AIKRLESL  357 (392)
Q Consensus       350 al~i~e~l  357 (392)
                      ++.+.+++
T Consensus       155 a~~~~~~~  162 (164)
T 3ro3_A          155 HLEISREV  162 (164)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHHh
Confidence            99987654

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.53  E-value=1.6e-08  Score=74.25  Aligned_cols=43  Identities=28%  Similarity=0.822  Sum_probs=37.9

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC----CCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK----DCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~  132 (392)
                      +.+.|+||++.+. + ++++|+|.||..||..|.    .||.||..+..
T Consensus        14 ~~~~C~IC~~~~~-~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   60 (70)
T 2ecn_A           14 DEEECCICMDGRA-D-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG   60 (70)
T ss_dssp             CCCCCSSSCCSCC-S-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred             CCCCCeeCCcCcc-C-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence            4689999999988 5 999999999999999994    49999987664

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.52  E-value=3.5e-06  Score=78.43  Aligned_cols=168  Identities=9%  Similarity=-0.078  Sum_probs=115.3

Q ss_pred             HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258          192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  271 (392)
Q Consensus       192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~  271 (392)
                      ..+..|++++|...+..       .+...+..... .........++......|++..|+.+++.+.........   . 
T Consensus        84 ~~~~~~~y~~A~~~~~~-------~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~-  151 (293)
T 2qfc_A           84 MLCKQKRYKEIYNKVWN-------ELKKEEYHPEF-QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID---V-  151 (293)
T ss_dssp             HHHHTTCHHHHHHHHHH-------HHHTCCCCHHH-HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC---T-
T ss_pred             HHHHhhhHHHHHHHHHH-------HhccccCChhH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc---h-
Confidence            45677788887776541       12222221111 112223344666665778899999988877543322211   1 


Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                       .....+++++|.++...|++++|+.+|++++++.+...    ...   .-.+..+.++|.++..+|++++|+.+|++++
T Consensus       152 -~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~----~~~---~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal  223 (293)
T 2qfc_A          152 -YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH----DNE---EFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             -THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----CCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC----ccc---cchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence             12456899999999999999999999999998866432    110   1123678899999999999999999999999


Q ss_pred             HHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          352 KRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       352 ~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      .+..........+.+..+++.++..+|+
T Consensus       224 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~  251 (293)
T 2qfc_A          224 EISCRINSMALIGQLYYQRGECLRKLEY  251 (293)
T ss_dssp             HHHHHTTBCSSHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence            9987665556667777888888877764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.49  E-value=5.7e-07  Score=95.18  Aligned_cols=130  Identities=18%  Similarity=0.274  Sum_probs=74.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258          226 LCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV  305 (392)
Q Consensus       226 ~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i  305 (392)
                      .||.|...+.++|.++..+|++.+|+.+|+++.+.    .+...       .++.+||.++..+|++++|+..|+++|++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l----~P~~~-------~a~~nLg~~l~~~g~~~eA~~~~~~Al~l   72 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV----FPEFA-------AAHSNLASVLQQQGKLQEALMHYKEAIRI   72 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            46777777777777777777777777777766433    22221       24556666666666666666666666553


Q ss_pred             HHH---------------------------HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258          306 RRD---------------------------AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT  358 (392)
Q Consensus       306 ~~~---------------------------~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~  358 (392)
                      .-.                           +++..+       +.+..+.++|.++..+|++++|+..|++++++     
T Consensus        73 ~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P-------~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-----  140 (723)
T 4gyw_A           73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP-------AFADAHSNLASIHKDSGNIPEAIASYRTALKL-----  140 (723)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            100                           000011       12445566666666666666666666666543     


Q ss_pred             cCCCchHHHHHHHHHHHHHHH
Q 016258          359 LKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       359 ~~p~~a~~l~~~~~~~~~l~~  379 (392)
                       +|+.+....+++.++..+++
T Consensus       141 -~P~~~~a~~~L~~~l~~~g~  160 (723)
T 4gyw_A          141 -KPDFPDAYCNLAHCLQIVCD  160 (723)
T ss_dssp             -CSCCHHHHHHHHHHHHHTTC
T ss_pred             -CCCChHHHhhhhhHHHhccc
Confidence             56666666666666665554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.48  E-value=8.8e-07  Score=93.77  Aligned_cols=104  Identities=10%  Similarity=0.191  Sum_probs=74.4

Q ss_pred             HHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 016258          229 QLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD  308 (392)
Q Consensus       229 ~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~  308 (392)
                      .+...+..+|.++..+|++.+|+..++++.+.    .+..       ..++.++|.++..+|++++|+..|+++|++   
T Consensus        75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l----~P~~-------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---  140 (723)
T 4gyw_A           75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQI----NPAF-------ADAHSNLASIHKDSGNIPEAIASYRTALKL---  140 (723)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence            33445555666666666777776666665432    2222       235777888888888888888888887765   


Q ss_pred             HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       309 ~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                          .+       +.+..+.++|.++..+|++++|.+.|++++++....
T Consensus       141 ----~P-------~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          141 ----KP-------DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             ----CS-------CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred             ----CC-------CChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence                23       235678999999999999999999999999987654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.48  E-value=1.8e-06  Score=70.42  Aligned_cols=105  Identities=11%  Similarity=0.190  Sum_probs=85.8

Q ss_pred             HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258          231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV  310 (392)
Q Consensus       231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~  310 (392)
                      ...+..+|..++..|++..|+.+|+++.+.    .+..       ...+.++|.++..+|++++|+..|+++|++.....
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~----~p~~-------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~   76 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL----DPSN-------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR   76 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence            345567899988999999999999988654    3333       24688999999999999999999999998865432


Q ss_pred             hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                             .....++..+.++|.++..+|++++|+..|++++.+
T Consensus        77 -------~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           77 -------ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -------hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence                   223457788999999999999999999999998763

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.47  E-value=6.6e-08  Score=71.70  Aligned_cols=45  Identities=24%  Similarity=0.641  Sum_probs=36.6

Q ss_pred             CCeeccccccccccC--ceeccCCCcchHHhHHhc----CCCCCCCCCccc
Q 016258           88 GPLSCMICQALLFEC--SKCTPCSHVYCKACISRF----KDCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~--p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~  132 (392)
                      ....|+||++.+.+.  .++++|+|.||..||..|    ..||+||..+..
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2ep4_A           14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ   64 (74)
T ss_dssp             CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred             CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence            468899999998732  334499999999999999    359999987765

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.47  E-value=3.6e-08  Score=81.52  Aligned_cols=44  Identities=34%  Similarity=0.780  Sum_probs=39.4

Q ss_pred             CCeeccccccccccCc-------eeccCCCcchHHhHHhcC----CCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECS-------KCTPCSHVYCKACISRFK----DCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~~  132 (392)
                      +.+.|+||++.+. +|       ++++|||+||..||.+|+    .||.|+..+..
T Consensus         6 ~~~~C~IC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   60 (133)
T 4ap4_A            6 GTVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   60 (133)
T ss_dssp             CSCBCTTTCCBHH-HHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred             CCCCCcccChhhh-CccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence            5689999999988 67       999999999999999993    59999998765

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.47  E-value=1e-06  Score=85.01  Aligned_cols=132  Identities=11%  Similarity=-0.006  Sum_probs=108.3

Q ss_pred             hhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016258          236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN  315 (392)
Q Consensus       236 ~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~  315 (392)
                      +.|..+...|++..|+.+++.+......+..     .........++|.++...|++++|+.+|++++++......    
T Consensus       108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~----  178 (383)
T 3ulq_A          108 FRGMYELDQREYLSAIKFFKKAESKLIFVKD-----RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA----  178 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST----
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCC-----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc----
Confidence            3567777889999999999998776666543     3345678999999999999999999999999998765311    


Q ss_pred             CCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          316 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       316 ~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                         ....++..+.++|.++..+|++++|+.+|++++.+.+.....+..+....+++.++..+|+
T Consensus       179 ---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~  239 (383)
T 3ulq_A          179 ---YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ  239 (383)
T ss_dssp             ---THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ---chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC
Confidence               1335788899999999999999999999999999999886556666778888888877765

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.47  E-value=8.6e-06  Score=77.81  Aligned_cols=138  Identities=16%  Similarity=0.163  Sum_probs=112.3

Q ss_pred             HHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 016258          230 LGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA  309 (392)
Q Consensus       230 h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~  309 (392)
                      ....+..++.++...|++..|+.+++++.........     ...+......+|.++...|++++|+.+|++++++....
T Consensus       186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  260 (406)
T 3sf4_A          186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL  260 (406)
T ss_dssp             HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence            3456777888888899999999999999877776543     34456789999999999999999999999999887653


Q ss_pred             hhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          310 VKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       310 ~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      .        .....+..+..+|.++..+|++++|+.+|++++.+.......+..+.....++.++..+|+.
T Consensus       261 ~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  323 (406)
T 3sf4_A          261 K--------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH  323 (406)
T ss_dssp             T--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             c--------CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            1        12345778889999999999999999999999999988855556666777888887777653

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.47  E-value=4.7e-08  Score=78.91  Aligned_cols=43  Identities=28%  Similarity=0.644  Sum_probs=36.3

Q ss_pred             CeeccccccccccCce------------------eccCCCcchHHhHHhcC---------CCCCCCCCccc
Q 016258           89 PLSCMICQALLFECSK------------------CTPCSHVYCKACISRFK---------DCPLCGADIEK  132 (392)
Q Consensus        89 ~~~C~iC~~~~~~~p~------------------~~~C~h~fC~~Ci~~~~---------~CP~C~~~~~~  132 (392)
                      +..|+||++.|. .+.                  .++|+|.||..||..|.         .||+||..+..
T Consensus        25 ~~~C~ICl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           25 EEDCIICMEKLA-VASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCEETTTTEETT-SCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCcCccCChhhc-CcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            468999999986 433                  78999999999999985         49999987754

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.47  E-value=1.3e-06  Score=84.39  Aligned_cols=133  Identities=11%  Similarity=-0.027  Sum_probs=108.7

Q ss_pred             hhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCC
Q 016258          235 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS  314 (392)
Q Consensus       235 ~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~  314 (392)
                      .+.|..+...|++..|+.+++++......+..     .........++|.++...|+++.|+.+|++++++......   
T Consensus       105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---  176 (378)
T 3q15_A          105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSD-----DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL---  176 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT---
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC---
Confidence            44567777889999999999998777666644     2456778999999999999999999999999998764321   


Q ss_pred             CCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          315 NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       315 ~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                          ....++..+.++|.++..+|++++|+++|++++.+.+.....+..+....+++.++..+|+
T Consensus       177 ----~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~  237 (378)
T 3q15_A          177 ----YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD  237 (378)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             ----chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence                1225788899999999999999999999999999998885545666778888888887765

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.46  E-value=3.1e-06  Score=68.94  Aligned_cols=115  Identities=11%  Similarity=0.073  Sum_probs=92.5

Q ss_pred             HHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 016258          228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR  307 (392)
Q Consensus       228 ~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~  307 (392)
                      |...+.+...|..++..|++..|+..|+++.+.    .+...       ..+.++|.++..+|++++|+..|++++++  
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~----~p~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~al~~--   76 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR----DPENA-------ILYSNRAACLTKLMEFQRALDDCDTCIRL--   76 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHhhHHHhhccHHHHHHHHHHHHHh--
Confidence            455667777899988999999999999887543    33333       46788999999999999999999999975  


Q ss_pred             HHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Q 016258          308 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSV  373 (392)
Q Consensus       308 ~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~  373 (392)
                           .+.       ....+.++|.++..+|++++|+..|++++++      +|++.....+++.+
T Consensus        77 -----~p~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l------~P~~~~a~~~l~~~  124 (126)
T 4gco_A           77 -----DSK-------FIKGYIRKAACLVAMREWSKAQRAYEDALQV------DPSNEEAREGVRNC  124 (126)
T ss_dssp             -----CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHH
T ss_pred             -----hhh-------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CcCCHHHHHHHHHh
Confidence                 222       2456888999999999999999999999865      68888777777654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.46  E-value=9.5e-06  Score=78.24  Aligned_cols=138  Identities=14%  Similarity=0.123  Sum_probs=110.8

Q ss_pred             HHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 016258          230 LGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA  309 (392)
Q Consensus       230 h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~  309 (392)
                      ....+..++.++...|++..|+.+++++.........     ...+...+..++.++...|++++|+.+|++++++....
T Consensus       222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  296 (411)
T 4a1s_A          222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD-----RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL  296 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence            3446677888888899999999999998777666443     33456688999999999999999999999999987653


Q ss_pred             hhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          310 VKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       310 ~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      .        .....+..+..+|.++..+|++++|+.+|++++.+.......+..+.....++.+|..+|+.
T Consensus       297 ~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  359 (411)
T 4a1s_A          297 G--------EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGH  359 (411)
T ss_dssp             T--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             C--------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccH
Confidence            1        12245677889999999999999999999999999998855556666777788887776653

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.42  E-value=1.7e-05  Score=73.07  Aligned_cols=137  Identities=16%  Similarity=0.167  Sum_probs=110.5

Q ss_pred             HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258          231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV  310 (392)
Q Consensus       231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~  310 (392)
                      ...+..++.++...|++..|+.+++.+.........     ...+...+..++.++...|++++|+.+|++++++.....
T Consensus       183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  257 (338)
T 3ro2_A          183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK  257 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence            345667788887899999999999998777666433     344566889999999999999999999999998876531


Q ss_pred             hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                              .....+..+..+|.++..+|++++|+.+|++++.+.......+........++.++..+|+.
T Consensus       258 --------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  319 (338)
T 3ro2_A          258 --------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH  319 (338)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             --------chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence                    12345677889999999999999999999999999998855566666778888888877754

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.42  E-value=1.1e-05  Score=74.26  Aligned_cols=169  Identities=17%  Similarity=0.118  Sum_probs=118.8

Q ss_pred             HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258          190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL  269 (392)
Q Consensus       190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~  269 (392)
                      +...+..|++++|...+..........    .    .-+.....+..++.++...|++..|+.+++++.........   
T Consensus        50 ~~~~~~~g~~~~A~~~~~~al~~~~~~----~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---  118 (338)
T 3ro2_A           50 GNAYFYLHDYAKALEYHHHDLTLARTI----G----DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND---  118 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHH----T----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhhcc----c----ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC---
Confidence            345567788888887775443322211    1    01233456667788888899999999999999887777644   


Q ss_pred             hHHHHHHHHHHHHHHHHHhccC--------------------HHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHH
Q 016258          270 EIIHTLSVSLNKIGDLKYYGGD--------------------LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAK  329 (392)
Q Consensus       270 e~~~~ls~~~~~lg~l~~~~g~--------------------l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~  329 (392)
                        ...+......+|.++...|+                    +++|+.+|++++.+.+....        ....+..+.+
T Consensus       119 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~--------~~~~~~~~~~  188 (338)
T 3ro2_A          119 --KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD--------RAAQGRAFGN  188 (338)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHH
T ss_pred             --chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC--------HHHHHHHHHH
Confidence              23456688899999999999                    99999999998887655321        2345667778


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          330 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       330 la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      +|.++..+|++++|+.+|++++.+.......+..+....+++.++..+|+
T Consensus       189 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  238 (338)
T 3ro2_A          189 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE  238 (338)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence            88888888888888888888888887764444445556666666665554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.39  E-value=5.1e-07  Score=89.82  Aligned_cols=101  Identities=11%  Similarity=-0.015  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258          273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  352 (392)
Q Consensus       273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~  352 (392)
                      ...+..++.+..++ .+|++++|+..|+++|+++...+....      .+++.++++|+.+|..+|+|++|+.+|++++.
T Consensus       285 ~~~~~ll~~ie~~~-~~g~~~~a~~~~~~~L~~~~~~lg~~h------~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~  357 (429)
T 3qwp_A          285 KEVQESLKKIEELK-AHWKWEQVLAMCQAIISSNSERLPDIN------IYQLKVLDCAMDACINLGLLEEALFYGTRTME  357 (429)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTCSSCCCCTTS------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhccCcCCccc------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            44555666666555 568999999999999987766554333      37899999999999999999999999999999


Q ss_pred             HHHHh--hcCCCchHHHHHHHHHHHHHHHH
Q 016258          353 RLESL--TLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       353 i~e~l--~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      +++.+  ..||+.+..+.+++.+|..+|+.
T Consensus       358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~  387 (429)
T 3qwp_A          358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMF  387 (429)
T ss_dssp             HHHHHSCSSCHHHHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHcCCCChHHHHHHHHHHHHHHhcCCH
Confidence            99998  99999999999999999998864

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.36  E-value=2.5e-06  Score=69.49  Aligned_cols=94  Identities=13%  Similarity=0.070  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                      ....+.++++||+.++..|++++|+..|+++|++       .+.       .+..+.++|.++..+|++++|+..|++++
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-------~p~-------~~~~~~nlg~~~~~~~~~~~A~~~~~~al   69 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-------DPS-------NITFYNNKAAVYFEEKKFAECVQFCEKAV   69 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence            3456778999999999999999999999999976       232       25678899999999999999999999999


Q ss_pred             HHHHHh-hcCCCchHHHHHHHHHHHHHHH
Q 016258          352 KRLESL-TLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       352 ~i~e~l-~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      ++-... ...+..+....+++.++..+++
T Consensus        70 ~~~~~~~~~~~~~a~~~~~lg~~~~~~~~   98 (127)
T 4gcn_A           70 EVGRETRADYKLIAKAMSRAGNAFQKQND   98 (127)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HhCcccchhhHHHHHHHHHHHHHHHHcCC
Confidence            987765 2222333344555555554443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.35  E-value=8.8e-06  Score=72.20  Aligned_cols=155  Identities=12%  Similarity=0.031  Sum_probs=116.7

Q ss_pred             hHHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcC-CcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCC
Q 016258          188 QQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMG-NTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM  266 (392)
Q Consensus       188 c~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~-~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~  266 (392)
                      ..+...+..|++++|...|.....       ..+ .+       ...+.+++.++...|++..|+.+++.+..    +.+
T Consensus        12 ~~g~~~~~~~~~~~A~~~~~~al~-------~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p   73 (228)
T 4i17_A           12 NEGNDALNAKNYAVAFEKYSEYLK-------LTNNQD-------SVTAYNCGVCADNIKKYKEAADYFDIAIK----KNY   73 (228)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH-------HTTTCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTC
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHh-------ccCCCC-------cHHHHHHHHHHHHhhcHHHHHHHHHHHHH----hCc
Confidence            334467788999999988863321       111 11       13455578888889999999999887752    333


Q ss_pred             CChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHH
Q 016258          267 DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG  346 (392)
Q Consensus       267 ~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~  346 (392)
                      .       .......+|.++...|++++|+..|++++++       .+.+......++..+.++|.++..+|++++|+..
T Consensus        74 ~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~  139 (228)
T 4i17_A           74 N-------LANAYIGKSAAYRDMKNNQEYIATLTEGIKA-------VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEEN  139 (228)
T ss_dssp             S-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             c-------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-------CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHH
Confidence            2       2346788999999999999999999999865       3443434446677889999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCC--chHHHHHHHHHHHHHHHH
Q 016258          347 FQEAIKRLESLTLKPE--EAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       347 ~~eal~i~e~l~~~p~--~a~~l~~~~~~~~~l~~~  380 (392)
                      |++++++      +|+  .+....+++.++..+|+.
T Consensus       140 ~~~al~~------~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          140 YKHATDV------TSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHTTS------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhc------CCCcccHHHHHHHHHHHHHHHHH
Confidence            9888764      788  788889999999888877

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.34  E-value=7.8e-08  Score=74.92  Aligned_cols=61  Identities=18%  Similarity=0.587  Sum_probs=43.9

Q ss_pred             CCeeccccccccccCceec---cCCCcchHHhHHhcC------------CCCC--CCCC--ccc-chhhhHHHHHHHHHH
Q 016258           88 GPLSCMICQALLFECSKCT---PCSHVYCKACISRFK------------DCPL--CGAD--IEK-IEADTTLQDVVDRFI  147 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~---~C~h~fC~~Ci~~~~------------~CP~--C~~~--~~~-~~~n~~l~~~v~~~~  147 (392)
                      +.+.|+||++.+. .+..+   +|||.||..||..++            .||.  |+..  +.. ...+....+++++|.
T Consensus         4 ~~~~C~IC~~~~~-~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky~   82 (94)
T 1wim_A            4 GSSGCKLCLGEYP-VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYK   82 (94)
T ss_dssp             SBCCCSSSCCCCB-GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHHH
T ss_pred             CCcCCcccCcccc-cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHHH
Confidence            4688999999987 55443   799999999998763            3999  9988  555 222333356677776


Q ss_pred             hh
Q 016258          148 EG  149 (392)
Q Consensus       148 ~~  149 (392)
                      ..
T Consensus        83 ~~   84 (94)
T 1wim_A           83 KL   84 (94)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.33  E-value=4e-07  Score=68.85  Aligned_cols=45  Identities=27%  Similarity=0.671  Sum_probs=35.3

Q ss_pred             CCeeccccccccccC-------------ceec-cCCCcchHHhHHhcC----CCCCCCCCccc
Q 016258           88 GPLSCMICQALLFEC-------------SKCT-PCSHVYCKACISRFK----DCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~-------------p~~~-~C~h~fC~~Ci~~~~----~CP~C~~~~~~  132 (392)
                      ++..|+||++.|.+.             ++.+ +|+|.|+..||.+|.    .||+||..+..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence            556788888887631             4455 599999999999994    49999987654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.32  E-value=1.8e-05  Score=63.34  Aligned_cols=122  Identities=9%  Similarity=0.023  Sum_probs=98.1

Q ss_pred             HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258          231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV  310 (392)
Q Consensus       231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~  310 (392)
                      ...+...|..++..|++..|+.+++.+...    .+...       ..+.++|.++...|++++|+..|++++++     
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----   67 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR----APEDA-------RGYSNRAAALAKLMSFPEAIADCNKAIEK-----   67 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCh-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence            345667788888899999999999887544    23232       46889999999999999999999999976     


Q ss_pred             hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 016258          311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFL  377 (392)
Q Consensus       311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l  377 (392)
                        .+.       ....+.++|.++..+|++++|+..|++++.+-......|.+..+...+..+...+
T Consensus        68 --~p~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           68 --DPN-------FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             --CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             --CCC-------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence              222       2456788999999999999999999999999877777788888888887776543

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.31  E-value=1.5e-07  Score=90.53  Aligned_cols=44  Identities=25%  Similarity=0.766  Sum_probs=41.1

Q ss_pred             CCeeccccccccccCceeccCCCc-chHHhHHhcCCCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECSKCTPCSHV-YCKACISRFKDCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~-fC~~Ci~~~~~CP~C~~~~~~  132 (392)
                      +.+.|+||++.+. +|+.++|||. ||..|+..|..||.||..+..
T Consensus       294 ~~~~C~IC~~~~~-~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~  338 (345)
T 3t6p_A          294 EERTCKVCMDKEV-SVVFIPCGHLVVCQECAPSLRKCPICRGIIKG  338 (345)
T ss_dssp             TTCBCTTTSSSBC-CEEEETTCCEEECTTTGGGCSBCTTTCCBCCE
T ss_pred             CCCCCCccCCcCC-ceEEcCCCChhHhHHHHhcCCcCCCCCCCccC
Confidence            4689999999988 9999999999 999999999999999998875

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.31  E-value=7.9e-05  Score=63.49  Aligned_cols=133  Identities=11%  Similarity=0.034  Sum_probs=99.1

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh-hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL-EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV  310 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~-e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~  310 (392)
                      ..+...|...+..|++.+|+..|+.+.+.......... .....-...+.++|.++..+|++++|+..|.++|++.....
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~   91 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   91 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            35566777777899999999999999877665322110 12223345899999999999999999999999999876666


Q ss_pred             hcCCCCCcchhhHHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchHHHHHHH
Q 016258          311 KRHSNVPSQVLDVAVSL----AKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRRL  371 (392)
Q Consensus       311 ~~~~~~~~~~~dla~sl----~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~a~~l~~~~  371 (392)
                      +-.+       +.+..+    .++|.++..+|++++|+..|++++++--+- ..-++...+...+.
T Consensus        92 e~~p-------d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~  150 (159)
T 2hr2_A           92 ELNQ-------DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI  150 (159)
T ss_dssp             CTTS-------THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred             cCCC-------chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            5555       345566    999999999999999999999999986554 33344444444333

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.29  E-value=1.9e-05  Score=73.37  Aligned_cols=116  Identities=9%  Similarity=0.034  Sum_probs=97.6

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhh
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK  311 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~  311 (392)
                      ..+..+|.++..+|++..|+.+++.+......+..    ........+.++|.++..+|++++|+.+|++++++..... 
T Consensus       156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~-  230 (293)
T 3u3w_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHD----NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN-  230 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC-
Confidence            35678888988899999999999999888777743    2445667899999999999999999999999999876532 


Q ss_pred             cCCCCCcchhhHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhc
Q 016258          312 RHSNVPSQVLDVAVSLAKVADVDRSIGN-EDVAVDGFQEAIKRLESLTL  359 (392)
Q Consensus       312 ~~~~~~~~~~dla~sl~~la~~~~~~g~-~~~A~~~~~eal~i~e~l~~  359 (392)
                             ....++..+.++|.++..+|+ +++|+.+|++|+.+.+.+.+
T Consensus       231 -------~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~  272 (293)
T 3u3w_A          231 -------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM  272 (293)
T ss_dssp             -------BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             -------cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence                   122568889999999999995 69999999999999998743

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.29  E-value=1.5e-07  Score=67.68  Aligned_cols=44  Identities=25%  Similarity=0.586  Sum_probs=38.6

Q ss_pred             CCeeccccccccccCceec--cCCCc-chHHhHHhcC----CCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECSKCT--PCSHV-YCKACISRFK----DCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~--~C~h~-fC~~Ci~~~~----~CP~C~~~~~~  132 (392)
                      ....|.||++... +++.+  ||||. ||..|+..++    .||.||.++..
T Consensus         6 ~~~~C~IC~~~~~-~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   56 (63)
T 2vje_B            6 LLKPCSLCEKRPR-DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL   56 (63)
T ss_dssp             GGSBCTTTSSSBS-CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred             cCCCCcccCCcCC-CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence            3568999999988 77777  99998 9999999986    89999998865

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.29  E-value=6.6e-06  Score=81.06  Aligned_cols=133  Identities=14%  Similarity=0.097  Sum_probs=98.0

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  312 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~  312 (392)
                      .+.++|.+....|++.+|+..++++.++.........  ......+..++|.++..+|++++|+.+|++++++.+.....
T Consensus        53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~--~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQA--EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGC--TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcccc--chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            4567888888899999999999999877665443222  22334578999999999999999999999999998876543


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          313 HSNVPSQVLDVAVSLAKVADVDRSI--GNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       313 ~~~~~~~~~dla~sl~~la~~~~~~--g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      ...      +.+..+.++|.++..+  +++++|++.|++++++      +|++..+..+++.++..+++
T Consensus       131 ~~~------~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~------~p~~~~~~~~~~~~~~~l~~  187 (472)
T 4g1t_A          131 YRI------ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK------KPKNPEFTSGLAIASYRLDN  187 (472)
T ss_dssp             SCC------CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHH
T ss_pred             cch------hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcC
Confidence            222      3455667777655544  5788999999888764      56777777777766655544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.26  E-value=3.4e-05  Score=64.75  Aligned_cols=131  Identities=16%  Similarity=0.090  Sum_probs=100.2

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCC----CCChh---HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP----MDDLE---IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN  304 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~----~~~~e---~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~  304 (392)
                      ..+...|..++..|++..|+.+|..+........    +...+   +.......+.++|.++..+|++++|+..|+++|+
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            4566678888889999999999999876644321    11111   1344556889999999999999999999999997


Q ss_pred             HHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCch-HHHHHHHHHHHHHHHHhh
Q 016258          305 VRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEA-GLEQRRLSVLEFLNNQLS  382 (392)
Q Consensus       305 i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a-~~l~~~~~~~~~l~~~~~  382 (392)
                      +       .+.       .+..+-.+|.++..+|++++|+..|++++.+      +|++. .+...+..+...+.+...
T Consensus        92 ~-------~p~-------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~~l~~~~~~~~~~~~  150 (162)
T 3rkv_A           92 R-------EET-------NEKALFRRAKARIAAWKLDEAEEDLKLLLRN------HPAAASVVAREMKIVTERRAEKKA  150 (162)
T ss_dssp             H-------STT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred             c-------CCc-------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            7       232       2557888999999999999999999998876      67777 677777777776665443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.24  E-value=2.3e-05  Score=74.90  Aligned_cols=136  Identities=13%  Similarity=0.091  Sum_probs=106.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCC----hhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 016258          226 LCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD----LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVR  301 (392)
Q Consensus       226 ~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~----~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~  301 (392)
                      .-+.....+..+|..++..|++..|+..|+.+...........    .++.......+.++|.++..+|++++|+..|++
T Consensus       142 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  221 (336)
T 1p5q_A          142 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK  221 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3455566778889988899999999999998876644332111    223445567899999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 016258          302 SLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQL  381 (392)
Q Consensus       302 sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~  381 (392)
                      +|++       .+.       .+..+.++|.++..+|++++|+..|++++.+      +|.+.....+++.++..+++.-
T Consensus       222 al~~-------~p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~P~~~~a~~~l~~~~~~~~~~~  281 (336)
T 1p5q_A          222 ALEL-------DSN-------NEKGLSRRGEAHLAVNDFELARADFQKVLQL------YPNNKAAKTQLAVCQQRIRRQL  281 (336)
T ss_dssp             HHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHh-------CCC-------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHHH
Confidence            9976       222       2557889999999999999999999998865      6777778888888887777653

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.24  E-value=1.8e-07  Score=67.48  Aligned_cols=44  Identities=27%  Similarity=0.612  Sum_probs=38.3

Q ss_pred             CCeeccccccccccCceec--cCCCc-chHHhHHhcC----CCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECSKCT--PCSHV-YCKACISRFK----DCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~--~C~h~-fC~~Ci~~~~----~CP~C~~~~~~  132 (392)
                      +...|.||++... +++.+  ||||. ||..|+..|+    .||.||..+..
T Consensus         7 ~~~~C~IC~~~~~-~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   57 (64)
T 2vje_A            7 AIEPCVICQGRPK-NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM   57 (64)
T ss_dssp             GGSCCTTTSSSCS-CEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred             CcCCCCcCCCCCC-CEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence            4578999999988 88876  99999 8999999985    49999998865

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.22  E-value=3.4e-05  Score=74.98  Aligned_cols=170  Identities=15%  Similarity=0.156  Sum_probs=109.0

Q ss_pred             HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCc----------HHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHH
Q 016258          190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNT----------SELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVE  259 (392)
Q Consensus       190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~----------~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~  259 (392)
                      +..++..|++.+|...+...       +...+..          ........+.+..++.+|...|++..+..++..+..
T Consensus        11 a~~l~~~~~y~eA~~~~~~~-------l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSL-------LDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHH-------HHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             HHHHHHCCCHHHHHHHHHHH-------HhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34678889999998877422       2211111          123344456778899999899999999999988877


Q ss_pred             HHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCC
Q 016258          260 FLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGN  339 (392)
Q Consensus       260 ~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~  339 (392)
                      +...+..     ........+.++.+....|+++.|+..|++++.+......        .+..+....+||.++..+|+
T Consensus        84 ~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~  150 (434)
T 4b4t_Q           84 YMMQFAK-----SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR--------VFLKHSLSIKLATLHYQKKQ  150 (434)
T ss_dssp             HHHTSCH-----HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC--------CSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHccc-----hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc--------cHHHHHHHHHHHHHHHHccC
Confidence            7766543     1223345666777777777777777777777766543211        11245556677777777777


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          340 EDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       340 ~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      +.+|+..+++++.++......+..+.+...++.++..+++
T Consensus       151 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (434)
T 4b4t_Q          151 YKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN  190 (434)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc
Confidence            7777777777776666655455555555556666555544

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.21  E-value=4.7e-07  Score=87.71  Aligned_cols=43  Identities=30%  Similarity=0.813  Sum_probs=38.7

Q ss_pred             CeeccccccccccCceeccCCCcchHHhHHhc-----CCCCCCCCCccc
Q 016258           89 PLSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEK  132 (392)
Q Consensus        89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~  132 (392)
                      ...|+||++.+. +|+.++|||.||..|+..|     ..||.||..+..
T Consensus       332 ~~~C~ICle~~~-~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          332 FQLCKICAENDK-DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             SSBCTTTSSSBC-CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             CCCCCccCcCCC-CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            379999999988 9999999999999999988     359999998765

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.19  E-value=4.4e-07  Score=74.84  Aligned_cols=45  Identities=33%  Similarity=0.771  Sum_probs=39.3

Q ss_pred             CCCeeccccccccccCc-------eeccCCCcchHHhHHhc----CCCCCCCCCccc
Q 016258           87 IGPLSCMICQALLFECS-------KCTPCSHVYCKACISRF----KDCPLCGADIEK  132 (392)
Q Consensus        87 ~~~~~C~iC~~~~~~~p-------~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~  132 (392)
                      .+.+.|+||++.+. .+       +.++|||.||..||.+|    ..||.||..+..
T Consensus        70 ~~~~~C~iC~~~~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~  125 (133)
T 4ap4_A           70 SGTVSCPICMDGYS-EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH  125 (133)
T ss_dssp             SSSCBCTTTCCBHH-HHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCCccc-cccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence            35789999999987 55       89999999999999998    469999998765

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.18  E-value=2e-05  Score=67.30  Aligned_cols=52  Identities=12%  Similarity=0.041  Sum_probs=30.1

Q ss_pred             HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHH
Q 016258          192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADS  257 (392)
Q Consensus       192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~  257 (392)
                      .-+..|++++|...|..+-       ...|       .+...+..++.++...|++..++..++.+
T Consensus        14 ~~~~~g~~~~A~~~~~~al-------~~~p-------~~~~~~~~la~~~~~~~~~~~a~~~~~~~   65 (184)
T 3vtx_A           14 KKRTKGDFDGAIRAYKKVL-------KADP-------NNVETLLKLGKTYMDIGLPNDAIESLKKF   65 (184)
T ss_dssp             HHHHHTCHHHHHHHHHHHH-------HHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHH-------HhCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4567899999988886332       2222       22334445555555666666666555444

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.17  E-value=8.8e-06  Score=72.38  Aligned_cols=143  Identities=16%  Similarity=0.149  Sum_probs=102.5

Q ss_pred             HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhh-----------cchhHHHhHHHHHHHH
Q 016258          192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAM-----------GDADAAVAYFADSVEF  260 (392)
Q Consensus       192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~-----------gdhh~a~~~~e~~~~~  260 (392)
                      ..++.|++++|...+...       +...|.       ....+..++.++...           |++.+|+..++.+...
T Consensus        48 ~~~~~g~~~~A~~~~~~a-------l~~~P~-------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  113 (217)
T 2pl2_A           48 TQLKLGLVNPALENGKTL-------VARTPR-------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV  113 (217)
T ss_dssp             HHHHTTCHHHHHHHHHHH-------HHHCTT-------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHH-------HHhCCC-------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh
Confidence            455677777777766422       222222       233455666666667           8888888888776543


Q ss_pred             HHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCH
Q 016258          261 LMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNE  340 (392)
Q Consensus       261 ~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~  340 (392)
                          .+...       .....+|.++...|++++|+..|++++++.        .       -...+.++|.++..+|++
T Consensus       114 ----~P~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~-------~~~~~~~la~~~~~~g~~  167 (217)
T 2pl2_A          114 ----NPRYA-------PLHLQRGLVYALLGERDKAEASLKQALALE--------D-------TPEIRSALAELYLSMGRL  167 (217)
T ss_dssp             ----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------C-------CHHHHHHHHHHHHHHTCH
T ss_pred             ----CcccH-------HHHHHHHHHHHHcCChHHHHHHHHHHHhcc--------c-------chHHHHHHHHHHHHcCCH
Confidence                34333       356789999999999999999999999773        1       134567899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          341 DVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       341 ~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      ++|+..|++++.+      +|++.....+++.++..+|+.
T Consensus       168 ~~A~~~~~~al~~------~P~~~~~~~~la~~~~~~g~~  201 (217)
T 2pl2_A          168 DEALAQYAKALEQ------APKDLDLRVRYASALLLKGKA  201 (217)
T ss_dssp             HHHHHHHHHHHHH------STTCHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHh------CCCChHHHHHHHHHHHHccCH
Confidence            9999999988864      788888888999888777754

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.17  E-value=3.2e-05  Score=71.78  Aligned_cols=116  Identities=9%  Similarity=0.044  Sum_probs=94.2

Q ss_pred             HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258          231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV  310 (392)
Q Consensus       231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~  310 (392)
                      ...+..+|.++...|++..|+.+++++.......... .   ......+.++|.++..+|++++|+.+|++++++.....
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~-~---~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~  230 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN-E---EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN  230 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-H---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc-c---cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence            3466778888888999999999999998877766542 1   11226789999999999999999999999999864311


Q ss_pred             hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHHhh
Q 016258          311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVA-VDGFQEAIKRLESLT  358 (392)
Q Consensus       311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A-~~~~~eal~i~e~l~  358 (392)
                              ....++..+.++|.++..+|++++| ..+|++|+.+.+.+.
T Consensus       231 --------~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~  271 (293)
T 2qfc_A          231 --------SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE  271 (293)
T ss_dssp             --------BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             --------cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence                    1124677889999999999999999 888999999999883

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.16  E-value=3.4e-05  Score=68.29  Aligned_cols=154  Identities=16%  Similarity=0.171  Sum_probs=112.8

Q ss_pred             HHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCC
Q 016258          189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD  268 (392)
Q Consensus       189 ~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~  268 (392)
                      .+...+..|++++|...+....       ...       |.....+..++.++..+|++..|+..++.+..    +.+..
T Consensus        48 ~~~~~~~~~~~~~A~~~~~~al-------~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~p~~  109 (228)
T 4i17_A           48 CGVCADNIKKYKEAADYFDIAI-------KKN-------YNLANAYIGKSAAYRDMKNNQEYIATLTEGIK----AVPGN  109 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH-------HTT-------CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC
T ss_pred             HHHHHHHhhcHHHHHHHHHHHH-------HhC-------cchHHHHHHHHHHHHHcccHHHHHHHHHHHHH----HCCCc
Confidence            3446667888888888775331       222       22345667788888889999999999887754    35566


Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhh--HHHHHHHHHHHHHhcCCH------
Q 016258          269 LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD--VAVSLAKVADVDRSIGNE------  340 (392)
Q Consensus       269 ~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~d--la~sl~~la~~~~~~g~~------  340 (392)
                      ..+...+......+|.++...|++++|+..|++++++       .+       +  .+..+.++|.++..+|+.      
T Consensus       110 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------~p-------~~~~~~~~~~l~~~~~~~~~~~~~~a~  175 (228)
T 4i17_A          110 ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV-------TS-------KKWKTDALYSLGVLFYNNGADVLRKAT  175 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------SC-------HHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc-------CC-------CcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777788889999999999999999999999999864       22       2  345566677666666655      


Q ss_pred             --------------HHHHHHHHHHHHHHHHh-hcCCCchHHHHHHHHHH
Q 016258          341 --------------DVAVDGFQEAIKRLESL-TLKPEEAGLEQRRLSVL  374 (392)
Q Consensus       341 --------------~~A~~~~~eal~i~e~l-~~~p~~a~~l~~~~~~~  374 (392)
                                    ..+...|++|+..+++. +..|++...+..++.+.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          176 PLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK  224 (228)
T ss_dssp             GGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence                          45566678888888887 77899888877777664

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.14  E-value=5.1e-05  Score=63.80  Aligned_cols=126  Identities=8%  Similarity=0.072  Sum_probs=96.5

Q ss_pred             HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258          231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV  310 (392)
Q Consensus       231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~  310 (392)
                      ...+..++..++..|++..|+.+++.+...    .+..       ...+.++|.++...|++++|+..|++++++.    
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----   75 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI----APAN-------PIYLSNRAAAYSASGQHEKAAEDAELATVVD----   75 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCcC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----
Confidence            345667788888899999999999887554    2322       2467899999999999999999999999762    


Q ss_pred             hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcCC
Q 016258          311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQLSEKP  385 (392)
Q Consensus       311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~~~~~  385 (392)
                         +.       ....+.++|.++..+|++++|+..|++++.+--    +...+.+...+..+...+++......
T Consensus        76 ---p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~~~l~~~~~~~~~~~~~~~  136 (164)
T 3sz7_A           76 ---PK-------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEG----NGGSDAMKRGLETTKRKIEEANRGAE  136 (164)
T ss_dssp             ---TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS----SSCCHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             ---CC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----CchHHHHHHHHHHHHHHHHHHHhccC
Confidence               22       255678899999999999999999999987641    11223467778888888887766543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.14  E-value=0.00023  Score=67.73  Aligned_cols=169  Identities=14%  Similarity=0.061  Sum_probs=116.5

Q ss_pred             HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258          190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL  269 (392)
Q Consensus       190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~  269 (392)
                      +..++..|++++|...+...       +...+....  ......+..++..+...|++..+..+++++.......+.   
T Consensus        21 a~~~~~~g~~~~A~~~~~~a-------l~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---   88 (373)
T 1hz4_A           21 AQVAINDGNPDEAERLAKLA-------LEELPPGWF--YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV---   88 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH-------HHTCCTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHCCCHHHHHHHHHHH-------HHcCCCCch--hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc---
Confidence            34667788998888766422       111111111  112335566777777889999999999998877766543   


Q ss_pred             hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016258          270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE  349 (392)
Q Consensus       270 e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e  349 (392)
                        .......+..++.++...|++++|+..|++++++.+.......      ...+..+.++|.++..+|++++|..+|++
T Consensus        89 --~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~  160 (373)
T 1hz4_A           89 --WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL------PMHEFLVRIRAQLLWAWARLDEAEASARS  160 (373)
T ss_dssp             --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS------THHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC------cHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence              2234567889999999999999999999999998775432211      24566778899999999999999999999


Q ss_pred             HHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          350 AIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       350 al~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      ++.+..... ++.......+++.++...|+
T Consensus       161 al~~~~~~~-~~~~~~~~~~la~~~~~~g~  189 (373)
T 1hz4_A          161 GIEVLSSYQ-PQQQLQCLAMLIQCSLARGD  189 (373)
T ss_dssp             HHHHTTTSC-GGGGHHHHHHHHHHHHHHTC
T ss_pred             HHHHhhccC-cHHHHHHHHHHHHHHHHcCC
Confidence            998876541 11233345556666655544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.11  E-value=9.2e-05  Score=64.28  Aligned_cols=135  Identities=12%  Similarity=0.079  Sum_probs=101.1

Q ss_pred             HHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh-----hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 016258          229 QLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL-----EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSL  303 (392)
Q Consensus       229 ~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~-----e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL  303 (392)
                      .....+...|..++..|++..|+.++..+............     ...........++|.++...|++++|+..|++++
T Consensus        36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  115 (198)
T 2fbn_A           36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL  115 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            34456677888888899999999999887654322211000     0111224678899999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhc
Q 016258          304 NVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQLSE  383 (392)
Q Consensus       304 ~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~~~  383 (392)
                      ++       .+.       ....+..+|.++..+|++++|+..|++++.+      +|.+......++.++..+++....
T Consensus       116 ~~-------~p~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~~  175 (198)
T 2fbn_A          116 KI-------DKN-------NVKALYKLGVANMYFGFLEEAKENLYKAASL------NPNNLDIRNSYELCVNKLKEARKK  175 (198)
T ss_dssp             HH-------STT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHHHC-
T ss_pred             Hh-------Ccc-------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHHHHHHHH
Confidence            76       222       2456788999999999999999999998865      678888899999999888776543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.11  E-value=4.9e-05  Score=64.77  Aligned_cols=104  Identities=14%  Similarity=0.074  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258          275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  354 (392)
Q Consensus       275 ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~  354 (392)
                      .+..+.++|+.....|++++|+..|.++|++.-......  -.......+..+.++|.++..+|++++|+..|+++++++
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~--a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~   87 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE--AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh--hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            456788999999999999999999999998865421111  001111234578999999999999999999999999997


Q ss_pred             HHh-hcCCCchHHH----HHHHHHHHHHHHH
Q 016258          355 ESL-TLKPEEAGLE----QRRLSVLEFLNNQ  380 (392)
Q Consensus       355 e~l-~~~p~~a~~l----~~~~~~~~~l~~~  380 (392)
                      .+- +.+|+.+...    .+++..+..||+.
T Consensus        88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~  118 (159)
T 2hr2_A           88 NRRGELNQDEGKLWISAVYSRALALDGLGRG  118 (159)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hccccCCCchHHHHHHHHHhHHHHHHHCCCH
Confidence            776 8889998888    9999999988764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.11  E-value=2.2e-05  Score=65.64  Aligned_cols=82  Identities=16%  Similarity=0.147  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      ..-.||.++...|++++|+..|++++++       .+.       -+..+.++|.++..+|++++|+..|++++++    
T Consensus        33 ~~~~la~~y~~~~~~~~A~~~~~~al~~-------~p~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~----   94 (150)
T 4ga2_A           33 KGFYFAKLYYEAKEYDLAKKYICTYINV-------QER-------DPKAHRFLGLLYELEENTDKAVECYRRSVEL----   94 (150)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHh----
Confidence            3445677777777777777777777654       222       1345666777777777777777776666643    


Q ss_pred             hcCCCchHHHHHHHHHHHHHHH
Q 016258          358 TLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       358 ~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                        +|.+.....+++.++..+++
T Consensus        95 --~p~~~~~~~~la~~~~~~~~  114 (150)
T 4ga2_A           95 --NPTQKDLVLKIAELLCKNDV  114 (150)
T ss_dssp             --CTTCHHHHHHHHHHHHHHCS
T ss_pred             --CCCCHHHHHHHHHHHHHcCC
Confidence              56666666666666655543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.10  E-value=2.2e-05  Score=63.77  Aligned_cols=90  Identities=16%  Similarity=0.112  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258          271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA  350 (392)
Q Consensus       271 ~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea  350 (392)
                      +...++....++|..+...|++++|+..|+++|++       .+.       .+..+.++|.++..+|++++|+..|+++
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~a   73 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-------DPE-------NAILYSNRAACLTKLMEFQRALDDCDTC   73 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHhhHHHhhccHHHHHHHHHHH
Confidence            34556778999999999999999999999999965       232       2557889999999999999999999999


Q ss_pred             HHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          351 IKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       351 l~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      +++      +|.......+++.++..+|+.
T Consensus        74 l~~------~p~~~~a~~~lg~~~~~~~~~   97 (126)
T 4gco_A           74 IRL------DSKFIKGYIRKAACLVAMREW   97 (126)
T ss_dssp             HHH------CTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHh------hhhhhHHHHHHHHHHHHCCCH
Confidence            865      788888888899998888764

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.10  E-value=0.00022  Score=63.27  Aligned_cols=157  Identities=22%  Similarity=0.202  Sum_probs=105.4

Q ss_pred             HHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChh
Q 016258          191 MRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLE  270 (392)
Q Consensus       191 ~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e  270 (392)
                      ...+..|++++|...+.....       .. .       ....+..++.++...|++..|+.+++.+..........   
T Consensus        13 ~~~~~~~~~~~A~~~~~~a~~-------~~-~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---   74 (258)
T 3uq3_A           13 NKFYKARQFDEAIEHYNKAWE-------LH-K-------DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRAD---   74 (258)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-------HS-C-------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC---
T ss_pred             HHHHHhccHHHHHHHHHHHHH-------hh-c-------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccc---
Confidence            366788999999888763321       11 1       12355667778878999999999999887766555432   


Q ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-------------------HHHhhcCCCCCcchhhHHHHHHHHH
Q 016258          271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR-------------------RDAVKRHSNVPSQVLDVAVSLAKVA  331 (392)
Q Consensus       271 ~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~-------------------~~~~~~~~~~~~~~~dla~sl~~la  331 (392)
                       ...+......+|.++...|++++|+..|++++++.                   +.+....       .+.+..+..+|
T Consensus        75 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~  146 (258)
T 3uq3_A           75 -YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVN-------PEKAEEARLEG  146 (258)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcC-------cchHHHHHHHH
Confidence             22345688899999999999999999999999831                   1111111       13445566777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          332 DVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       332 ~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      .++...|++++|+..|++++.+      +|.+.....+++.++..+|+
T Consensus       147 ~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~  188 (258)
T 3uq3_A          147 KEYFTKSDWPNAVKAYTEMIKR------APEDARGYSNRAAALAKLMS  188 (258)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhcCHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHhCC
Confidence            8888888888888777777653      34445555555555554443

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.05  E-value=1.8e-06  Score=68.67  Aligned_cols=44  Identities=30%  Similarity=0.615  Sum_probs=35.8

Q ss_pred             CCeeccccccccccC-----------------ceeccCCCcchHHhHHhcC----CCCCCCCCcc
Q 016258           88 GPLSCMICQALLFEC-----------------SKCTPCSHVYCKACISRFK----DCPLCGADIE  131 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~-----------------p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~  131 (392)
                      ++..|+||++.|.+.                 .+.++|+|.|+..||..|.    .||+||..+.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            457799999987732                 3568999999999999993    5999998754

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.03  E-value=2.6e-05  Score=65.16  Aligned_cols=117  Identities=15%  Similarity=0.084  Sum_probs=87.2

Q ss_pred             HHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 016258          229 QLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD  308 (392)
Q Consensus       229 ~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~  308 (392)
                      ........++.+++..|++..|+.+++.+...    .+...       .++..+|.++...|++++|+..|++++++   
T Consensus        29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~----~p~~~-------~a~~~lg~~~~~~~~~~~A~~~~~~al~~---   94 (150)
T 4ga2_A           29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINV----QERDP-------KAHRFLGLLYELEENTDKAVECYRRSVEL---   94 (150)
T ss_dssp             HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHcCchHHHHHHHHHHHHh---
Confidence            33445567889998999999999999887544    34343       36789999999999999999999999976   


Q ss_pred             HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 016258          309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG-FQEAIKRLESLTLKPEEAGLEQRRLSVLEF  376 (392)
Q Consensus       309 ~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~-~~eal~i~e~l~~~p~~a~~l~~~~~~~~~  376 (392)
                          .+.       ....+.++|.++..+|++++|... +++++++      +|.+..+...++.++..
T Consensus        95 ----~p~-------~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l------~P~~~~~~~l~~~ll~~  146 (150)
T 4ga2_A           95 ----NPT-------QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL------FPGSPAVYKLKEQLLDC  146 (150)
T ss_dssp             ----CTT-------CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH------STTCHHHHHHHHHHHHT
T ss_pred             ----CCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHH
Confidence                232       245678899999999999776654 4666653      67776666555555543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.02  E-value=0.00013  Score=69.12  Aligned_cols=162  Identities=13%  Similarity=0.061  Sum_probs=101.5

Q ss_pred             hhhHHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCC
Q 016258          186 LVQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP  265 (392)
Q Consensus       186 l~c~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~  265 (392)
                      +.-.+...++.|++++|...+....       ..       .|.+...+..++.++...|++..|+.+++.+...    .
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al-------~~-------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~  129 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAI-------LQ-------DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL----Q  129 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHH-------HH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----C
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH-------Hh-------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----C
Confidence            3344557788999999998886332       11       2233446677888887889999999998877544    2


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC----------------Cc------ch---
Q 016258          266 MDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV----------------PS------QV---  320 (392)
Q Consensus       266 ~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~----------------~~------~~---  320 (392)
                      +..       ...+..+|.++...|++++|+..|++++++...........                ..      ..   
T Consensus       130 p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  202 (365)
T 4eqf_A          130 PNN-------LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLE  202 (365)
T ss_dssp             TTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHH
T ss_pred             CCC-------HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            222       24677888889899999999999998887543321111000                00      00   


Q ss_pred             -----hh--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258          321 -----LD--VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       321 -----~d--la~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~  378 (392)
                           .+  .+..+..+|.++..+|++++|+..|++++.+      +|.++....+++.++..+|
T Consensus       203 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g  261 (365)
T 4eqf_A          203 AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV------RPEDYSLWNRLGATLANGD  261 (365)
T ss_dssp             HHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTT
T ss_pred             HHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcC
Confidence                 00  2345667778888888888888777777654      3444555555555555444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.01  E-value=4.4e-05  Score=75.08  Aligned_cols=97  Identities=13%  Similarity=0.018  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258          276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  355 (392)
Q Consensus       276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e  355 (392)
                      ....+.||.++..+|++++|+..|++++++.+.......+     ...+.++.++|.+|..+|++++|+.+|++++.+.+
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~-----~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~  125 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAE-----IRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE  125 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCT-----TTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccc-----hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence            3468899999999999999999999999998776543322     24577899999999999999999999999999999


Q ss_pred             Hh--hcCCCchHHHHHHHHHHHHH
Q 016258          356 SL--TLKPEEAGLEQRRLSVLEFL  377 (392)
Q Consensus       356 ~l--~~~p~~a~~l~~~~~~~~~l  377 (392)
                      .+  ..+++.+.+..+++..+..+
T Consensus       126 ~~~~~~~~~~~~~~~~~g~~~~~~  149 (472)
T 4g1t_A          126 KFSSPYRIESPELDCEEGWTRLKC  149 (472)
T ss_dssp             HSCCSSCCCCHHHHHHHHHHHHHH
T ss_pred             hcccccchhhHHHHHHHHHHHHHH
Confidence            98  44566666666666555444

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.00  E-value=0.00026  Score=55.45  Aligned_cols=120  Identities=13%  Similarity=0.129  Sum_probs=92.7

Q ss_pred             HHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 016258          229 QLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD  308 (392)
Q Consensus       229 ~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~  308 (392)
                      .....+..++..+...|++..|+.+++.+...    .+..       ......++.++...|++++|+..|++++++   
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---   75 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIEL----NPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICI---   75 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc----CCCC-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhc---
Confidence            33456667788887889999999998877543    2222       235778899999999999999999999875   


Q ss_pred             HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       309 ~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                          .+.       ....+..+|.++..+|++++|+..|++++.+      .|.+......++.++..+++
T Consensus        76 ----~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           76 ----DPA-------YSKAYGRMGLALSSLNKHVEAVAYYKKALEL------DPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             ----CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHTT
T ss_pred             ----Ccc-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CccchHHHHHHHHHHHHHhc
Confidence                222       1446778999999999999999999988765      57777778888888877764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.00  E-value=0.00011  Score=61.58  Aligned_cols=101  Identities=16%  Similarity=0.076  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcc----hhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016258          274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ----VLDVAVSLAKVADVDRSIGNEDVAVDGFQE  349 (392)
Q Consensus       274 ~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~----~~dla~sl~~la~~~~~~g~~~~A~~~~~e  349 (392)
                      .....+.++|..+...|++++|+..|.+++++..............    ....+..+.++|.++..+|++++|+..|++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            3456789999999999999999999999999866544322211111    224566788999999999999999999999


Q ss_pred             HHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          350 AIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       350 al~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      ++.+      +|..+....+++.++..+|+.
T Consensus        89 al~~------~p~~~~a~~~~g~~~~~~g~~  113 (162)
T 3rkv_A           89 VLKR------EETNEKALFRRAKARIAAWKL  113 (162)
T ss_dssp             HHHH------STTCHHHHHHHHHHHHHTTCH
T ss_pred             HHhc------CCcchHHHHHHHHHHHHHhcH
Confidence            9876      688888888999999888764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.99  E-value=7.9e-05  Score=74.31  Aligned_cols=135  Identities=11%  Similarity=0.021  Sum_probs=102.5

Q ss_pred             HHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCC----hhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 016258          226 LCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD----LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVR  301 (392)
Q Consensus       226 ~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~----~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~  301 (392)
                      .-+.....+..+|..++..|++..|+..|+++...........    .++.......+.+++.++..+|++++|+..|.+
T Consensus       263 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  342 (457)
T 1kt0_A          263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK  342 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            4456667778889988899999999999998877654432111    123444567889999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          302 SLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       302 sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      +|++.       +.       .+..+.++|.++..+|++++|+..|++++++      +|.+......++.++..+++.
T Consensus       343 al~~~-------p~-------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l------~P~~~~a~~~l~~~~~~~~~~  401 (457)
T 1kt0_A          343 ALGLD-------SA-------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV------NPQNKAARLQISMCQKKAKEH  401 (457)
T ss_dssp             HHHHS-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------C----CHHHHHHHHHHHHHHH
T ss_pred             HHhcC-------Cc-------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHH
Confidence            99762       22       2557889999999999999999999998764      577777788888888777754

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.99  E-value=6.2e-05  Score=71.41  Aligned_cols=83  Identities=14%  Similarity=0.080  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258          277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  356 (392)
Q Consensus       277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~  356 (392)
                      .....+|.++...|++++|+..|++++++.       +.       .+..+.++|.++..+|++++|+..|++++.+   
T Consensus       214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---  276 (365)
T 4eqf_A          214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVR-------PE-------DYSLWNRLGATLANGDRSEEAVEAYTRALEI---  276 (365)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence            356788999999999999999999988752       22       2456778888999999999998888888765   


Q ss_pred             hhcCCCchHHHHHHHHHHHHHHH
Q 016258          357 LTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       357 l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                         +|++.....+++.++..+|+
T Consensus       277 ---~p~~~~~~~~l~~~~~~~g~  296 (365)
T 4eqf_A          277 ---QPGFIRSRYNLGISCINLGA  296 (365)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHTC
T ss_pred             ---CCCchHHHHHHHHHHHHCCC
Confidence               57777777788888777664

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.98  E-value=4e-05  Score=64.69  Aligned_cols=103  Identities=10%  Similarity=0.073  Sum_probs=83.7

Q ss_pred             HHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258          226 LCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV  305 (392)
Q Consensus       226 ~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i  305 (392)
                      .-|.+...+..++...+..|++.+|+.+|+.+...    .+.+.       ..+.++|.++...|++++|+..|++++++
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~P~~~-------~~~~~lg~~~~~~g~~~~Ai~~~~~al~l   99 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY----DFYNV-------DYIMGLAAIYQIKEQFQQAADLYAVAFAL   99 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            34666677888888888999999999999876543    44444       36788999999999999999999999976


Q ss_pred             HHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          306 RRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       306 ~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                             .+.+       ...+.++|.++..+|++++|+..|++++.+
T Consensus       100 -------~P~~-------~~~~~~lg~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          100 -------GKND-------YTPVFHTGQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             -------SSSC-------CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -------CCCC-------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                   2332       345778999999999999999999999876

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.96  E-value=4.7e-05  Score=67.59  Aligned_cols=145  Identities=12%  Similarity=0.050  Sum_probs=105.0

Q ss_pred             HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258          190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL  269 (392)
Q Consensus       190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~  269 (392)
                      +...+..|++++|...+.       ..+...+.+.       ..+..++.++...|++..|+..++.+...    .+...
T Consensus        12 g~~~~~~g~~~~A~~~~~-------~al~~~p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~P~~~   73 (217)
T 2pl2_A           12 GVQLYALGRYDAALTLFE-------RALKENPQDP-------EALYWLARTQLKLGLVNPALENGKTLVAR----TPRYL   73 (217)
T ss_dssp             HHHHHHTTCHHHHHHHHH-------HHHTTSSSCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH
T ss_pred             HHHHHHcCCHHHHHHHHH-------HHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcH
Confidence            335678889999888775       2223333333       45667788887899999999988877543    34443


Q ss_pred             hHHHHHHHHHHHHHHHHHhc-----------cCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcC
Q 016258          270 EIIHTLSVSLNKIGDLKYYG-----------GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG  338 (392)
Q Consensus       270 e~~~~ls~~~~~lg~l~~~~-----------g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g  338 (392)
                      .       ....+|.++...           |++++|+..|++++++       .+.       .+..+.++|.++..+|
T Consensus        74 ~-------a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------~P~-------~~~~~~~lg~~~~~~g  132 (217)
T 2pl2_A           74 G-------GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-------NPR-------YAPLHLQRGLVYALLG  132 (217)
T ss_dssp             H-------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTT
T ss_pred             H-------HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-------Ccc-------cHHHHHHHHHHHHHcC
Confidence            3       566778888888           8899999998888865       333       2456778999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          339 NEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       339 ~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      ++++|+..|++++++-       ++.....+++.++..+|+.
T Consensus       133 ~~~~A~~~~~~al~~~-------~~~~~~~~la~~~~~~g~~  167 (217)
T 2pl2_A          133 ERDKAEASLKQALALE-------DTPEIRSALAELYLSMGRL  167 (217)
T ss_dssp             CHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHTCH
T ss_pred             ChHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHcCCH
Confidence            9999999999998763       4455667777777766653

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.94  E-value=0.00011  Score=61.33  Aligned_cols=125  Identities=18%  Similarity=0.037  Sum_probs=90.5

Q ss_pred             HHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 016258          228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR  307 (392)
Q Consensus       228 ~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~  307 (392)
                      |.....+..++......|++.+|+.+++.+...    .+.+.       ..+..+|.++...|++++|+..|++++.+  
T Consensus        18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~l--   84 (148)
T 2vgx_A           18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL----DHYDS-------RFFLGLGACRQAMGQYDLAIHSYSYGAVM--   84 (148)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CcccH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence            344455666788887899999999998876433    34343       35678999999999999999999999875  


Q ss_pred             HHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          308 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       308 ~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                           .+.+       ...+.++|.++..+|++++|+..|++++.+..   .+|+...+..+....+..+...
T Consensus        85 -----~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~l~~l~~~  142 (148)
T 2vgx_A           85 -----DIXE-------PRFPFHAAECLLQXGELAEAESGLFLAQELIA---NXPEFXELSTRVSSMLEAIKLK  142 (148)
T ss_dssp             -----STTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT---TCGGGHHHHHHHHHHHHHC---
T ss_pred             -----CCCC-------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc---CCCcchHHHHHHHHHHHHHHhH
Confidence                 2332       33567899999999999999999999987654   3455555556555555555544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.93  E-value=0.00015  Score=57.45  Aligned_cols=117  Identities=11%  Similarity=0.072  Sum_probs=90.0

Q ss_pred             HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258          231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV  310 (392)
Q Consensus       231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~  310 (392)
                      ...+..++..+...|++..|+.+++.+...    .+..       ......++.++...|++++|+..|++++++.    
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----   80 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR----NPKD-------AKLYSNRAACYTKLLEFQLALKDCEECIQLE----   80 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT----CTTC-------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----
Confidence            345666778877889999999988776432    2322       2467889999999999999999999999751    


Q ss_pred             hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258          311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~  378 (392)
                         +.       ....+..+|.++..+|++++|+..|++++.+      +|.+.....+++.++..++
T Consensus        81 ---~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           81 ---PT-------FIKGYTRKAAALEAMKDYTKAMDVYQKALDL------DSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             ---TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CGGGTHHHHHHHHHHHHHT
T ss_pred             ---CC-------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhc
Confidence               21       2446778999999999999999999988764      5666777788888877665

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.92  E-value=0.00072  Score=52.98  Aligned_cols=123  Identities=12%  Similarity=0.168  Sum_probs=91.8

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhh
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK  311 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~  311 (392)
                      ..+..++..+...|++..|+.+++.+...    .+..       ......+|.++...|++++|+..|++++++..... 
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-   72 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKEL----DPTN-------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-   72 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCcc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc-
Confidence            45566777777889999999998877544    2222       24577899999999999999999999998754321 


Q ss_pred             cCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                            .....+...+..+|.++..+|++++|+..|++++.+      .| +......++.++..+++
T Consensus        73 ------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           73 ------EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE------HR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             ------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CC-CHHHHHHHHHHHHHHHH
T ss_pred             ------hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CC-CHHHHHHHHHHHHHHHH
Confidence                  112234667889999999999999999999988874      34 35667777777766654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.92  E-value=0.00014  Score=70.51  Aligned_cols=132  Identities=16%  Similarity=0.182  Sum_probs=102.8

Q ss_pred             HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCC-----CChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258          231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM-----DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV  305 (392)
Q Consensus       231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~-----~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i  305 (392)
                      ...+..++..++..|++..|+..|+.+.........     ....+.......+.+++.++..+|++++|+.+|+++|++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            445677888888999999999999988765433210     001134556678999999999999999999999999964


Q ss_pred             HHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhh
Q 016258          306 RRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQLS  382 (392)
Q Consensus       306 ~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~~  382 (392)
                             .+       +.+..+.++|.++..+|++++|+..|++++++      .|++..+...++.++..+++...
T Consensus       303 -------~p-------~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l------~P~~~~~~~~l~~~~~~~~~~~~  359 (370)
T 1ihg_A          303 -------DP-------SNTKALYRRAQGWQGLKEYDQALADLKKAQEI------APEDKAIQAELLKVKQKIKAQKD  359 (370)
T ss_dssp             -------CT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             -------Cc-------hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHH
Confidence                   22       23567889999999999999999999998865      57788888889999888876643

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=97.90  E-value=3.8e-06  Score=59.74  Aligned_cols=43  Identities=9%  Similarity=0.236  Sum_probs=38.3

Q ss_pred             CeeccccccccccCceec-cCCCcchHHhHHhcC----CCCCCCCCccc
Q 016258           89 PLSCMICQALLFECSKCT-PCSHVYCKACISRFK----DCPLCGADIEK  132 (392)
Q Consensus        89 ~~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~~----~CP~C~~~~~~  132 (392)
                      .|.|+|+++++. +|+++ ++||+|++.||.+|.    .||.++.++..
T Consensus         3 ~~~CpIs~~~m~-dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~   50 (61)
T 2bay_A            3 HMLCAISGKVPR-RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI   50 (61)
T ss_dssp             -CCCTTTCSCCS-SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             eEEecCCCCCCC-CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence            478999999999 99999 999999999999993    59999988765

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.88  E-value=0.00026  Score=66.66  Aligned_cols=84  Identities=15%  Similarity=0.105  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258          277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  356 (392)
Q Consensus       277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~  356 (392)
                      .....+|.++...|++++|+..|++++++       .+.       ....+.++|.++..+|++++|+..|++++.+   
T Consensus       218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---  280 (368)
T 1fch_A          218 DVQCGLGVLFNLSGEYDKAVDCFTAALSV-------RPN-------DYLLWNKLGATLANGNQSEEAVAAYRRALEL---  280 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CcC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence            46778899999999999999999998875       122       2456788999999999999999998888765   


Q ss_pred             hhcCCCchHHHHHHHHHHHHHHHH
Q 016258          357 LTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       357 l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                         +|+......+++.++..+|+.
T Consensus       281 ---~~~~~~~~~~l~~~~~~~g~~  301 (368)
T 1fch_A          281 ---QPGYIRSRYNLGISCINLGAH  301 (368)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHTCH
T ss_pred             ---CCCcHHHHHHHHHHHHHCCCH
Confidence               577777788888888777653

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.88  E-value=0.0002  Score=67.52  Aligned_cols=151  Identities=18%  Similarity=0.131  Sum_probs=109.2

Q ss_pred             HHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHH
Q 016258          193 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEII  272 (392)
Q Consensus       193 a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~  272 (392)
                      .+..|++++|...+...       +...+...     ....+..++.++...|++..|+.+++.+...    .+..    
T Consensus       191 ~~~~~~~~~A~~~~~~a-------~~~~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~----  250 (368)
T 1fch_A          191 LLSDSLFLEVKELFLAA-------VRLDPTSI-----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV----RPND----  250 (368)
T ss_dssp             HHHHHHHHHHHHHHHHH-------HHHSTTSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC----
T ss_pred             HhhcccHHHHHHHHHHH-------HHhCcCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CcCC----
Confidence            34677788887766422       12122200     2235566778887889999999998877544    2222    


Q ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258          273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  352 (392)
Q Consensus       273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~  352 (392)
                         ...+..+|.++...|++++|+..|++++++.       +       +....+..+|.++..+|++++|+..|++++.
T Consensus       251 ---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  313 (368)
T 1fch_A          251 ---YLLWNKLGATLANGNQSEEAVAAYRRALELQ-------P-------GYIRSRYNLGISCINLGAHREAVEHFLEALN  313 (368)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------C-------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence               2367889999999999999999999998761       2       2245678899999999999999999999998


Q ss_pred             HHHHh-----hcCCCchHHHHHHHHHHHHHHHH
Q 016258          353 RLESL-----TLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       353 i~e~l-----~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      +....     ..++.......+++.++..+|+.
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  346 (368)
T 1fch_A          314 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS  346 (368)
T ss_dssp             HHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred             hCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence            86654     22345577788889888888754

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.84  E-value=0.00029  Score=62.47  Aligned_cols=130  Identities=15%  Similarity=0.192  Sum_probs=100.1

Q ss_pred             HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258          231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV  310 (392)
Q Consensus       231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~  310 (392)
                      ...+..++..+...|++..|+.+++.+....     ...       ..+..+|.++...|++++|+..|++++++.....
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-----~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~   72 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-----KDI-------TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR   72 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----CCT-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-----ccH-------HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc
Confidence            3456677888888999999999998876543     222       3678899999999999999999999998755421


Q ss_pred             hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------------------HHHh-hcCCCchHHHHHH
Q 016258          311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR-------------------LESL-TLKPEEAGLEQRR  370 (392)
Q Consensus       311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i-------------------~e~l-~~~p~~a~~l~~~  370 (392)
                             ......+..+..+|.++..+|++++|+..|++++.+                   +++. ..+|.......++
T Consensus        73 -------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  145 (258)
T 3uq3_A           73 -------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLE  145 (258)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             -------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence                   112234677889999999999999999999999983                   3333 5677777777788


Q ss_pred             HHHHHHHHH
Q 016258          371 LSVLEFLNN  379 (392)
Q Consensus       371 ~~~~~~l~~  379 (392)
                      +.++..+|+
T Consensus       146 ~~~~~~~~~  154 (258)
T 3uq3_A          146 GKEYFTKSD  154 (258)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHhcC
Confidence            887776654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.83  E-value=0.00038  Score=57.01  Aligned_cols=125  Identities=21%  Similarity=0.124  Sum_probs=92.0

Q ss_pred             HHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 016258          228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR  307 (392)
Q Consensus       228 ~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~  307 (392)
                      |.....+..++......|++..|+.+++....    +.+...       ..+..+|.++...|++++|+..|++++.+  
T Consensus        15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~--   81 (142)
T 2xcb_A           15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCM----LDHYDA-------RYFLGLGACRQSLGLYEQALQSYSYGALM--   81 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH----hCCccH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence            33444556677777789999999999877653    334343       35678899999999999999999999875  


Q ss_pred             HHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          308 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       308 ~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                           .+.+       ...+.++|.++..+|++++|+..|++++.+.-   .+|....+..+....+..+.+.
T Consensus        82 -----~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~l~~l~~~  139 (142)
T 2xcb_A           82 -----DINE-------PRFPFHAAECHLQLGDLDGAESGFYSARALAA---AQPAHEALAARAGAMLEAVTAR  139 (142)
T ss_dssp             -----CTTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---TCGGGHHHHHHHHHHHHHHHHH
T ss_pred             -----CCCC-------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCcchHHHHHHHHHHHHHHHhc
Confidence                 2332       23567899999999999999999999987754   4455555666666666665543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.83  E-value=8.3e-05  Score=68.69  Aligned_cols=126  Identities=14%  Similarity=0.223  Sum_probs=88.6

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  312 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~  312 (392)
                      .+..++.++...|++..|+.+++.+..    +.+..       ......++.++...|++++|+..|++++++.......
T Consensus       161 ~~~~l~~~~~~~~~~~~A~~~~~~al~----~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  229 (330)
T 3hym_B          161 PMLYIGLEYGLTNNSKLAERFFSQALS----IAPED-------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE  229 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHT----TCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHH----hCCCC-------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc
Confidence            344466666677777777777766532    22222       2467789999999999999999999999875443221


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      ..     ....+..+..+|.++..+|++++|+..|++++.+      .|.+.....+++.++..+|+.
T Consensus       230 ~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~  286 (330)
T 3hym_B          230 VT-----VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL------IPQNASTYSAIGYIHSLMGNF  286 (330)
T ss_dssp             CT-----TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCSHHHHHHHHHHHHHTCH
T ss_pred             cc-----ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh------CccchHHHHHHHHHHHHhccH
Confidence            11     1123446778999999999999999998888765      466667777777777776653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.80  E-value=0.00013  Score=72.92  Aligned_cols=121  Identities=21%  Similarity=0.141  Sum_probs=92.8

Q ss_pred             HHHhhhhhhhhhh---------cchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhc--------cCHHH
Q 016258          232 AVLGMLGDCCRAM---------GDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYG--------GDLQA  294 (392)
Q Consensus       232 ~~L~~~c~~C~~~---------gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~--------g~l~~  294 (392)
                      ..+..++.++...         |++.+|+.+++++...    .+...       ..+..+|.++...        |++++
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~-------~~~~~lg~~~~~~~~~~~~~~g~~~~  239 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM----DVLDG-------RSWYILGNAYLSLYFNTGQNPKISQQ  239 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh----CCCCH-------HHHHHHHHHHHHHHHhhccccchHHH
Confidence            4556677777677         8888888888877543    33333       3577888888888        89999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 016258          295 ARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVL  374 (392)
Q Consensus       295 A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~  374 (392)
                      |+..|++++++.-.           ..+.+..+.++|.++..+|++++|+..|++++.+      +|+......+++.++
T Consensus       240 A~~~~~~al~~~p~-----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~~~a~~~l~~~~  302 (474)
T 4abn_A          240 ALSAYAQAEKVDRK-----------ASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL------DPAWPEPQQREQQLL  302 (474)
T ss_dssp             HHHHHHHHHHHCGG-----------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-----------cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHH
Confidence            99999999976210           1133567889999999999999999999998865      677788888888888


Q ss_pred             HHHHHH
Q 016258          375 EFLNNQ  380 (392)
Q Consensus       375 ~~l~~~  380 (392)
                      ..+++.
T Consensus       303 ~~lg~~  308 (474)
T 4abn_A          303 EFLSRL  308 (474)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888754

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.80  E-value=0.0011  Score=58.07  Aligned_cols=119  Identities=13%  Similarity=0.135  Sum_probs=86.9

Q ss_pred             hhhhhhhhcchhHHHhHHHHHHHHHH---------hCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 016258          237 LGDCCRAMGDADAAVAYFADSVEFLM---------KLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR  307 (392)
Q Consensus       237 ~c~~C~~~gdhh~a~~~~e~~~~~~~---------~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~  307 (392)
                      .+......|++..|+.+++.+.....         .+....    ........++|.++...|++++|+..|++++++  
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--   83 (208)
T 3urz_A           10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNS----EISSKLATELALAYKKNRNYDKAYLFYKELLQK--   83 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTS----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchh----hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence            34455578888888888887643211         111111    111223345999999999999999999999875  


Q ss_pred             HHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          308 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       308 ~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                           .+.       -...+.++|.++..+|++++|+..|++++.+      +|+++....+++.+|...++
T Consensus        84 -----~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           84 -----APN-------NVDCLEACAEMQVCRGQEKDALRMYEKILQL------EADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             -----CTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHH
T ss_pred             -----CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHHhH
Confidence                 233       2456888999999999999999999988864      78888889999998876654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.79  E-value=0.0002  Score=62.94  Aligned_cols=92  Identities=14%  Similarity=0.149  Sum_probs=67.2

Q ss_pred             HHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhh----------------hhhhhhhhcchhHHHh
Q 016258          189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGM----------------LGDCCRAMGDADAAVA  252 (392)
Q Consensus       189 ~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~----------------~c~~C~~~gdhh~a~~  252 (392)
                      .+...+..|++++|...|.....              .-|.....+.+                ++.++..+|++..|+.
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~--------------~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~   75 (208)
T 3urz_A           10 KVSAAIEAGQNGQAVSYFRQTIA--------------LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL   75 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH--------------HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH--------------hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence            34477889999999988853321              11222223333                7888888999999999


Q ss_pred             HHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258          253 YFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV  305 (392)
Q Consensus       253 ~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i  305 (392)
                      .++.+...    .+...       ..+..+|.++...|++++|+..|++++++
T Consensus        76 ~~~~al~~----~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~  117 (208)
T 3urz_A           76 FYKELLQK----APNNV-------DCLEACAEMQVCRGQEKDALRMYEKILQL  117 (208)
T ss_dssp             HHHHHHHH----CTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            99877543    33333       36788999999999999999999999875

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.79  E-value=0.00042  Score=59.99  Aligned_cols=17  Identities=24%  Similarity=0.395  Sum_probs=12.6

Q ss_pred             HHHHHhhcHHHHHHHhh
Q 016258          191 MRAFRAQNVESAKSRLS  207 (392)
Q Consensus       191 ~~a~~~g~~~~A~~~~~  207 (392)
                      ...+..|++++|...+.
T Consensus        16 ~~~~~~~~~~~A~~~~~   32 (225)
T 2vq2_A           16 MEYMRGQDYRQATASIE   32 (225)
T ss_dssp             HHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHH
Confidence            35667888888888774

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.78  E-value=0.00011  Score=70.29  Aligned_cols=81  Identities=17%  Similarity=0.213  Sum_probs=50.1

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258          279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT  358 (392)
Q Consensus       279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~  358 (392)
                      ...++.++...|++++|+..|++++++       .+       +....+..+|.++..+|++++|+..|++++.+     
T Consensus       104 ~~~l~~~~~~~g~~~~A~~~~~~al~~-------~p-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----  164 (388)
T 1w3b_A          104 YINLAAALVAAGDMEGAVQAYVSALQY-------NP-------DLYCVRSDLGNLLKALGRLEEAKACYLKAIET-----  164 (388)
T ss_dssp             HHHHHHHHHHHSCSSHHHHHHHHHHHH-------CT-------TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-------CC-------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Confidence            445555555555555555555555432       12       12334566778888888888888777776643     


Q ss_pred             cCCCchHHHHHHHHHHHHHHH
Q 016258          359 LKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       359 ~~p~~a~~l~~~~~~~~~l~~  379 (392)
                       +|..+....+++.++...|+
T Consensus       165 -~p~~~~~~~~l~~~~~~~g~  184 (388)
T 1w3b_A          165 -QPNFAVAWSNLGCVFNAQGE  184 (388)
T ss_dssp             -CTTCHHHHHHHHHHHHTTTC
T ss_pred             -CCCCHHHHHHHHHHHHHcCC
Confidence             67777777777777766554

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=97.74  E-value=4.9e-06  Score=67.16  Aligned_cols=44  Identities=30%  Similarity=0.615  Sum_probs=1.0

Q ss_pred             CCeeccccccccccC-----------------ceeccCCCcchHHhHHhcC----CCCCCCCCcc
Q 016258           88 GPLSCMICQALLFEC-----------------SKCTPCSHVYCKACISRFK----DCPLCGADIE  131 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~-----------------p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~  131 (392)
                      ++-.|+||++.|.+.                 .+.++|+|.|+..||..|.    .||+||..+.
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             CC---------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            456899999998631                 2235899999999999994    5999998653

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.73  E-value=0.0012  Score=51.00  Aligned_cols=114  Identities=23%  Similarity=0.358  Sum_probs=86.1

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  312 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~  312 (392)
                      .+..++..+...|++..++.+++++...    .+...       .....++.++...|++++|+..|++++++       
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------   72 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNA-------EAWYNLGNAYYKQGDYDEAIEYYQKALEL-------   72 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH----CcCcH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Confidence            4555677777788999999888877543    22222       35678899999999999999999999864       


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 016258          313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFL  377 (392)
Q Consensus       313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l  377 (392)
                      .+.       ....+..++.++..+|++++|+..|++++.+      .|.+.....+++.++..+
T Consensus        73 ~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           73 DPN-------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHH
T ss_pred             CCc-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHhc
Confidence            122       1345678999999999999999998888754      577777788888777654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.72  E-value=0.00047  Score=61.36  Aligned_cols=89  Identities=15%  Similarity=0.101  Sum_probs=42.5

Q ss_pred             HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258          190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL  269 (392)
Q Consensus       190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~  269 (392)
                      +...+..|++++|...+.....       ..+.       ....+..++.++...|++..|+.+++++...    .+.. 
T Consensus        44 a~~~~~~~~~~~A~~~~~~al~-------~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~-  104 (252)
T 2ho1_A           44 GLGYLQRGNTEQAKVPLRKALE-------IDPS-------SADAHAALAVVFQTEMEPKLADEEYRKALAS----DSRN-  104 (252)
T ss_dssp             HHHHHHTTCTGGGHHHHHHHHH-------HCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-
T ss_pred             HHHHHHcCChHHHHHHHHHHHh-------cCCC-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CcCc-
Confidence            3355678888888877743221       1111       1223334444444555555555555544322    1111 


Q ss_pred             hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 016258          270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSL  303 (392)
Q Consensus       270 e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL  303 (392)
                            ......++.++...|++++|+..|++++
T Consensus       105 ------~~~~~~la~~~~~~g~~~~A~~~~~~~~  132 (252)
T 2ho1_A          105 ------ARVLNNYGGFLYEQKRYEEAYQRLLEAS  132 (252)
T ss_dssp             ------HHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ------HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                  1233444555555555555555555544

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.72  E-value=0.00016  Score=61.54  Aligned_cols=125  Identities=14%  Similarity=0.130  Sum_probs=88.1

Q ss_pred             HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258          190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL  269 (392)
Q Consensus       190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~  269 (392)
                      +...+..|++++|...+...       +...+.       +...+..++..+...+++..+...+..+..    +.+...
T Consensus        46 a~~~~~~~~~~~a~~~~~~~-------~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~----~~~~~~  107 (184)
T 3vtx_A           46 GKTYMDIGLPNDAIESLKKF-------VVLDTT-------SAEAYYILGSANFMIDEKQAAIDALQRAIA----LNTVYA  107 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH-------HHHCCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHH-------HhcCch-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCccch
Confidence            33455677888777766422       112222       223445566666677888888877766543    233333


Q ss_pred             hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016258          270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE  349 (392)
Q Consensus       270 e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e  349 (392)
                             .....+|.++...|++++|+..|++++++       .+.       .+..+.++|.++..+|++++|+..|++
T Consensus       108 -------~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-------~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~  166 (184)
T 3vtx_A          108 -------DAYYKLGLVYDSMGEHDKAIEAYEKTISI-------KPG-------FIRAYQSIGLAYEGKGLRDEAVKYFKK  166 (184)
T ss_dssp             -------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHhCCchhHHHHHHHHHHh-------cch-------hhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence                   35678899999999999999999999875       232       255788999999999999999999999


Q ss_pred             HHHH
Q 016258          350 AIKR  353 (392)
Q Consensus       350 al~i  353 (392)
                      ++++
T Consensus       167 al~~  170 (184)
T 3vtx_A          167 ALEK  170 (184)
T ss_dssp             HHHT
T ss_pred             HHhC
Confidence            9865

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.70  E-value=0.0011  Score=62.86  Aligned_cols=135  Identities=16%  Similarity=0.094  Sum_probs=102.1

Q ss_pred             HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258          231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV  310 (392)
Q Consensus       231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~  310 (392)
                      +..+...+.+....|++..+..+++++...   ......   ......+..+|.++...|++++|+..|++++++.....
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   87 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEE---LPPGWF---YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD   87 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CCTTCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCCch---hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC
Confidence            455566677777789999999888877543   222221   23445788999999999999999999999999876521


Q ss_pred             hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc--CCCchHHHHHHHHHHHHHHH
Q 016258          311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL--KPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~--~p~~a~~l~~~~~~~~~l~~  379 (392)
                              .....+..+.++|.++..+|++++|+.+|++++.+.+....  +|..+....+++.++..+|+
T Consensus        88 --------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  150 (373)
T 1hz4_A           88 --------VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR  150 (373)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC
T ss_pred             --------cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC
Confidence                    12245667889999999999999999999999999998732  35666677778888776654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.70  E-value=0.002  Score=51.39  Aligned_cols=122  Identities=11%  Similarity=-0.068  Sum_probs=89.6

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhh
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK  311 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~  311 (392)
                      ..+..++..+...|++..|+.+++.+...    .+..       ......+|.++...|++++|+..|++++++.     
T Consensus        10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----   73 (137)
T 3q49_B           10 QELKEQGNRLFVGRKYPEAAACYGRAITR----NPLV-------AVYYTNRALCYLKMQQPEQALADCRRALELD-----   73 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHhh----CcCc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----
Confidence            34566777887899999999998877544    2222       2467889999999999999999999998752     


Q ss_pred             cCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                        +.       ....+.++|.++..+|++++|+..|++++.+-... .......+...+..+......
T Consensus        74 --p~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~l~~~~~~~~~  131 (137)
T 3q49_B           74 --GQ-------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ-RLNFGDDIPSALRIAKKKRWN  131 (137)
T ss_dssp             --TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCCTTHHHHHHHHHHHHHHH
T ss_pred             --ch-------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhH-HHHHHHHHHHHHHHHHHHHHH
Confidence              22       24567889999999999999999999999887663 112234455555555444433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.69  E-value=0.00035  Score=61.47  Aligned_cols=143  Identities=13%  Similarity=0.051  Sum_probs=92.4

Q ss_pred             HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258          192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  271 (392)
Q Consensus       192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~  271 (392)
                      ..+..|++++|...+....       ...+       .....+..++.++...|++..|+.+++.+...    .+...  
T Consensus        66 ~~~~~~~~~~A~~~~~~~~-------~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~--  125 (243)
T 2q7f_A           66 LLSSVNELERALAFYDKAL-------ELDS-------SAATAYYGAGNVYVVKEMYKEAKDMFEKALRA----GMENG--  125 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHH-------HHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TCCSH--
T ss_pred             HHHHcCCHHHHHHHHHHHH-------HcCC-------cchHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCH--
Confidence            4556777777777664221       1111       12334555667776788888888888776443    22222  


Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                           .....++.++...|++++|+..|++++++.       +.       ....+..+|.++..+|++++|+..|++++
T Consensus       126 -----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  186 (243)
T 2q7f_A          126 -----DLFYMLGTVLVKLEQPKLALPYLQRAVELN-------EN-------DTEARFQFGMCLANEGMLDEALSQFAAVT  186 (243)
T ss_dssp             -----HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------Cc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                 246677888888889999988888887652       11       13356678888888888888888877776


Q ss_pred             HHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          352 KRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       352 ~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      .+      .|.+......++.++..+|+
T Consensus       187 ~~------~~~~~~~~~~la~~~~~~~~  208 (243)
T 2q7f_A          187 EQ------DPGHADAFYNAGVTYAYKEN  208 (243)
T ss_dssp             HH------CTTCHHHHHHHHHHHHHTTC
T ss_pred             Hh------CcccHHHHHHHHHHHHHccC
Confidence            53      45556666667776665544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.69  E-value=0.00042  Score=55.08  Aligned_cols=85  Identities=13%  Similarity=0.067  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258          276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  355 (392)
Q Consensus       276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e  355 (392)
                      ...+.++|..+...|++++|+..|++++++.       +.       ....+.++|.++..+|++++|+..|++++.+  
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--   67 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-------PE-------DARGYSNRAAALAKLMSFPEAIADCNKAIEK--   67 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CC-------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence            4578889999999999999999999998762       22       2457889999999999999999999998865  


Q ss_pred             HhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          356 SLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       356 ~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                          +|.+.....+++.++..+|+.
T Consensus        68 ----~p~~~~~~~~lg~~~~~~~~~   88 (126)
T 3upv_A           68 ----DPNFVRAYIRKATAQIAVKEY   88 (126)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCH
T ss_pred             ----CCCcHHHHHHHHHHHHHHhCH
Confidence                678888888889888887764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.68  E-value=0.00047  Score=57.52  Aligned_cols=143  Identities=15%  Similarity=0.078  Sum_probs=97.9

Q ss_pred             HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258          192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  271 (392)
Q Consensus       192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~  271 (392)
                      ..+..|++++|...+....       ...+.+       ...+..++.++...|++..|+.+++.....    .+...  
T Consensus        17 ~~~~~~~~~~A~~~~~~~~-------~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~--   76 (186)
T 3as5_A           17 SHAKAGRYSQAVMLLEQVY-------DADAFD-------VDVALHLGIAYVKTGAVDRGTELLERSLAD----APDNV--   76 (186)
T ss_dssp             HHHHHTCHHHHHHHHTTTC-------CTTSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH--
T ss_pred             HHHHhcCHHHHHHHHHHHH-------HhCccC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCH--
Confidence            5567888888888775321       111111       234556677776788888888888776543    22222  


Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                           .....++.++...|++++|+..|++++++       .+.       ....+..+|.++..+|++++|+..|++++
T Consensus        77 -----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~  137 (186)
T 3as5_A           77 -----KVATVLGLTYVQVQKYDLAVPLLIKVAEA-------NPI-------NFNVRFRLGVALDNLGRFDEAIDSFKIAL  137 (186)
T ss_dssp             -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------CcH-------hHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence                 35677888888889999999999888865       121       13456778888999999999998888877


Q ss_pred             HHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          352 KRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       352 ~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      .+      .|........++.++..+|+
T Consensus       138 ~~------~~~~~~~~~~la~~~~~~~~  159 (186)
T 3as5_A          138 GL------RPNEGKVHRAIAFSYEQMGR  159 (186)
T ss_dssp             HH------CTTCHHHHHHHHHHHHHTTC
T ss_pred             hc------CccchHHHHHHHHHHHHcCC
Confidence            54      35666667777777766654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.67  E-value=0.00062  Score=50.24  Aligned_cols=83  Identities=22%  Similarity=0.318  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258          276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  355 (392)
Q Consensus       276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e  355 (392)
                      ......+|.++...|++++|+..|++++++.       +.       ....+.++|.++..+|++++|+..|++++.+  
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--   72 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PN-------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--   72 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------CC-------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence            3467889999999999999999999999651       22       1446778999999999999999999988865  


Q ss_pred             HhhcCCCchHHHHHHHHHHHHHH
Q 016258          356 SLTLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       356 ~l~~~p~~a~~l~~~~~~~~~l~  378 (392)
                          +|.+.....+++.++..+|
T Consensus        73 ----~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 ----DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             ----CTTCHHHHHHHHHHHHHHC
T ss_pred             ----CCCCHHHHHHHHHHHHhcC
Confidence                5777788888888876553

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.66  E-value=0.0001  Score=66.53  Aligned_cols=127  Identities=13%  Similarity=0.083  Sum_probs=78.9

Q ss_pred             HHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCC
Q 016258          189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD  268 (392)
Q Consensus       189 ~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~  268 (392)
                      .+...+..|++++|...+...       +...+.+       ...+..++.++...|++..|+.+++.+..    .. ..
T Consensus         9 ~a~~~~~~~~~~~A~~~~~~~-------l~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~-~~   69 (272)
T 3u4t_A            9 YADFLFKNNNYAEAIEVFNKL-------EAKKYNS-------PYIYNRRAVCYYELAKYDLAQKDIETYFS----KV-NA   69 (272)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHH-------HHTTCCC-------STTHHHHHHHHHHTTCHHHHHHHHHHHHT----TS-CT
T ss_pred             HHHHHHHhcCHHHHHHHHHHH-------HHhCCCc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh----cc-Cc
Confidence            344667889999998887533       1222222       22445566677678888888888776643    11 12


Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016258          269 LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ  348 (392)
Q Consensus       269 ~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~  348 (392)
                      ..+   +......+|.++...|++++|+..|++++++.       +..       ...+..+|.++..+|++++|+..|+
T Consensus        70 ~~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-------~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~  132 (272)
T 3u4t_A           70 TKA---KSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-------TTR-------LDMYGQIGSYFYNKGNFPLAIQYME  132 (272)
T ss_dssp             TTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTC-------THHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred             hhH---HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-------ccc-------HHHHHHHHHHHHHccCHHHHHHHHH
Confidence            211   23456788888888888888888888888641       111       2345566666666666666666654


Q ss_pred             HHH
Q 016258          349 EAI  351 (392)
Q Consensus       349 eal  351 (392)
                      +++
T Consensus       133 ~al  135 (272)
T 3u4t_A          133 KQI  135 (272)
T ss_dssp             GGC
T ss_pred             HHh
Confidence            443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.65  E-value=0.00018  Score=73.26  Aligned_cols=116  Identities=16%  Similarity=0.146  Sum_probs=91.3

Q ss_pred             HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Q 016258          231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAV  310 (392)
Q Consensus       231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~  310 (392)
                      ...+..++.++...|++.+|+.+++++..    +.+..       ...+..+|.++...|++++|+..|++++++     
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----   86 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRGLA----LHPGH-------PEAVARLGRVRWTQQRHAEAAVLLQQASDA-----   86 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHT----TSTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----
Confidence            34566778888788999999988877653    23333       236788999999999999999999999975     


Q ss_pred             hcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 016258          311 KRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFL  377 (392)
Q Consensus       311 ~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l  377 (392)
                        .+.       ....+.++|.++..+|++++|+..|++++++      +|++.....+++.++..+
T Consensus        87 --~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           87 --APE-------HPGIALWLGHALEDAGQAEAAAAAYTRAHQL------LPEEPYITAQLLNWRRRL  138 (568)
T ss_dssp             --CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHT
T ss_pred             --CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHh
Confidence              222       2456788999999999999999999988765      577777888888888777

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.65  E-value=0.00038  Score=66.57  Aligned_cols=82  Identities=15%  Similarity=0.146  Sum_probs=45.4

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258          279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT  358 (392)
Q Consensus       279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~  358 (392)
                      ...+|.++...|++++|+..|++++++       .+       +....+.++|.++...|++++|+..|++++.      
T Consensus       172 ~~~l~~~~~~~g~~~~A~~~~~~al~~-------~p-------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------  231 (388)
T 1w3b_A          172 WSNLGCVFNAQGEIWLAIHHFEKAVTL-------DP-------NFLDAYINLGNVLKEARIFDRAVAAYLRALS------  231 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHH-------CT-------TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc-------CC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------
Confidence            344444444445555555554444432       11       1133455566666666666666665555544      


Q ss_pred             cCCCchHHHHHHHHHHHHHHHH
Q 016258          359 LKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       359 ~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      .+|++.....+++.++..+|+.
T Consensus       232 ~~p~~~~~~~~l~~~~~~~g~~  253 (388)
T 1w3b_A          232 LSPNHAVVHGNLACVYYEQGLI  253 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCH
T ss_pred             hCcCCHHHHHHHHHHHHHcCCH
Confidence            3577777777788877766653

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.63  E-value=0.0012  Score=59.53  Aligned_cols=163  Identities=9%  Similarity=-0.042  Sum_probs=110.0

Q ss_pred             hhHHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCC
Q 016258          187 VQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM  266 (392)
Q Consensus       187 ~c~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~  266 (392)
                      .-.+...+..|++++|...|...       +...+.+.    .....+.+++.+++.+|++..|+..++.....    .+
T Consensus        19 ~~~a~~~~~~g~~~~A~~~~~~~-------l~~~p~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~----~p   83 (261)
T 3qky_A           19 FERAMEFYNQGKYDRAIEYFKAV-------FTYGRTHE----WAADAQFYLARAYYQNKEYLLAASEYERFIQI----YQ   83 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH-------GGGCSCST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHH-------HHhCCCCc----chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH----CC
Confidence            34455778899999998887522       22222221    11346677888888999999999998876543    22


Q ss_pred             CChhHHHHHHHHHHHHHHHHHh--------ccCHHHHHHHHHHHHHHHHHHhhcCCCCCcch----------hhHHHHHH
Q 016258          267 DDLEIIHTLSVSLNKIGDLKYY--------GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQV----------LDVAVSLA  328 (392)
Q Consensus       267 ~~~e~~~~ls~~~~~lg~l~~~--------~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~----------~dla~sl~  328 (392)
                      ..+.    ...++-.+|.++..        .|++++|+..|++.++..       +.+....          ..++...-
T Consensus        84 ~~~~----~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~a~~~~~~~~~~~~~~~~  152 (261)
T 3qky_A           84 IDPR----VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-------PNHELVDDATQKIRELRAKLARKQY  152 (261)
T ss_dssp             TCTT----HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-------TTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCch----hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-------cCchhHHHHHHHHHHHHHHHHHHHH
Confidence            2221    23567889999988        899999999999988642       2221110          11222336


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258          329 KVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       329 ~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~  378 (392)
                      ++|.++..+|++++|+..|++++...   ...+.....+.+++.+|..+|
T Consensus       153 ~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g  199 (261)
T 3qky_A          153 EAARLYERRELYEAAAVTYEAVFDAY---PDTPWADDALVGAMRAYIAYA  199 (261)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhc
Confidence            78999999999999999998887532   222335567788888887774

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.62  E-value=0.00012  Score=73.16  Aligned_cols=145  Identities=14%  Similarity=0.107  Sum_probs=107.1

Q ss_pred             HHHHHHhhcH-HHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCC
Q 016258          190 AMRAFRAQNV-ESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD  268 (392)
Q Consensus       190 a~~a~~~g~~-~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~  268 (392)
                      +...+..|++ ++|...+...       +...       |.+...+..++.++...|++.+|+.+++.+...    .+. 
T Consensus       109 g~~~~~~g~~~~~A~~~~~~a-------l~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~-  169 (474)
T 4abn_A          109 GKALNVTPDYSPEAEVLLSKA-------VKLE-------PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH----CKN-  169 (474)
T ss_dssp             HHHHTSSSSCCHHHHHHHHHH-------HHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT----CCC-
T ss_pred             HHHHHhccccHHHHHHHHHHH-------HhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCC-
Confidence            3355677888 8888777522       2222       223446677888888899999999998877533    222 


Q ss_pred             hhHHHHHHHHHHHHHHHHHhc---------cCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhc--
Q 016258          269 LEIIHTLSVSLNKIGDLKYYG---------GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSI--  337 (392)
Q Consensus       269 ~e~~~~ls~~~~~lg~l~~~~---------g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~--  337 (392)
                             ...+.++|.++...         |++++|+..|++++++       .+.       ....+.++|.++..+  
T Consensus       170 -------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~lg~~~~~~~~  228 (474)
T 4abn_A          170 -------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-------DVL-------DGRSWYILGNAYLSLYF  228 (474)
T ss_dssp             -------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-------CCC-------CHHHHHHHHHHHHHHHH
Confidence                   14688899999988         8888888888888765       332       245678899999988  


Q ss_pred             ------CCHHHHHHHHHHHHHHHHHhhcCC---CchHHHHHHHHHHHHHHHH
Q 016258          338 ------GNEDVAVDGFQEAIKRLESLTLKP---EEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       338 ------g~~~~A~~~~~eal~i~e~l~~~p---~~a~~l~~~~~~~~~l~~~  380 (392)
                            |++++|+..|++++.+      +|   .++....+++.+|..+|+.
T Consensus       229 ~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~lg~~~~~~g~~  274 (474)
T 4abn_A          229 NTGQNPKISQQALSAYAQAEKV------DRKASSNPDLHLNRATLHKYEESY  274 (474)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHH------CGGGGGCHHHHHHHHHHHHHTTCH
T ss_pred             hhccccchHHHHHHHHHHHHHh------CCCcccCHHHHHHHHHHHHHcCCH
Confidence                  8899999999998876      56   7888889999998887754

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.62  E-value=0.00059  Score=57.34  Aligned_cols=86  Identities=9%  Similarity=-0.058  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258          275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  354 (392)
Q Consensus       275 ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~  354 (392)
                      -...+..+|..+...|++++|+..|++++++       .+.       -+..+.++|.++..+|++++|+..|++++.+ 
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-------~P~-------~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-   99 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-------DFY-------NVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-   99 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-
Confidence            3457889999999999999999999998865       333       2556788999999999999999999999865 


Q ss_pred             HHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          355 ESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       355 e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                           +|++.....+++.+|..+|+.
T Consensus       100 -----~P~~~~~~~~lg~~~~~lg~~  120 (151)
T 3gyz_A          100 -----GKNDYTPVFHTGQCQLRLKAP  120 (151)
T ss_dssp             -----SSSCCHHHHHHHHHHHHTTCH
T ss_pred             -----CCCCcHHHHHHHHHHHHcCCH
Confidence                 688888899999999888864

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.59  E-value=9.7e-05  Score=72.09  Aligned_cols=139  Identities=13%  Similarity=0.024  Sum_probs=83.6

Q ss_pred             HHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcc-hhHHHhHHHHHHHHHHhCCCCChhH
Q 016258          193 AFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGD-ADAAVAYFADSVEFLMKLPMDDLEI  271 (392)
Q Consensus       193 a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gd-hh~a~~~~e~~~~~~~~L~~~~~e~  271 (392)
                      .+..|++++|...+..+       +.       .-|.+...+..++.+...+|+ +.+|+..++++...    .+...  
T Consensus       107 ~~~~g~~~~Al~~~~~a-------l~-------l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----~P~~~--  166 (382)
T 2h6f_A          107 LQRDERSERAFKLTRDA-------IE-------LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----QPKNY--  166 (382)
T ss_dssp             HHHTCCCHHHHHHHHHH-------HH-------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----CTTCH--
T ss_pred             HHHCCChHHHHHHHHHH-------HH-------hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH----CCCCH--
Confidence            34567788887777522       11       223344556666777767785 88888877766432    33333  


Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                           ..+.++|.++..+|++++|+..|+++|++       .+.       -...+.++|.++..+|++++|+..|++++
T Consensus       167 -----~a~~~~g~~~~~~g~~~eAl~~~~kal~l-------dP~-------~~~a~~~lg~~~~~~g~~~eAl~~~~~al  227 (382)
T 2h6f_A          167 -----QVWHHRRVLVEWLRDPSQELEFIADILNQ-------DAK-------NYHAWQHRQWVIQEFKLWDNELQYVDQLL  227 (382)
T ss_dssp             -----HHHHHHHHHHHHHTCCTTHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHccCHHHHHHHHHHHHHh-------Ccc-------CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence                 35677777777778888888888877754       222       13345666666666666666666666665


Q ss_pred             HHHHHhhcCCCchHHHHHHHHHHHH
Q 016258          352 KRLESLTLKPEEAGLEQRRLSVLEF  376 (392)
Q Consensus       352 ~i~e~l~~~p~~a~~l~~~~~~~~~  376 (392)
                      .+      +|.+.....+++.++..
T Consensus       228 ~l------~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          228 KE------DVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HH------CTTCHHHHHHHHHHHHH
T ss_pred             Hh------CCCCHHHHHHHHHHHHH
Confidence            43      44444444444444444

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.59  E-value=0.00023  Score=65.59  Aligned_cols=122  Identities=14%  Similarity=0.123  Sum_probs=83.3

Q ss_pred             HhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcC
Q 016258          234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH  313 (392)
Q Consensus       234 L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~  313 (392)
                      +..++.++...|++..|+.+++.+....    +...       .....++.++...|++++|+..|++++++       .
T Consensus       128 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~  189 (330)
T 3hym_B          128 WIAYGHSFAVESEHDQAMAAYFTAAQLM----KGCH-------LPMLYIGLEYGLTNNSKLAERFFSQALSI-------A  189 (330)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHT----TTCS-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------C
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhc----cccH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHh-------C
Confidence            4445555556667777776666554332    1111       13444777777778888887777777653       2


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc---CCCchHHHHHHHHHHHHHHHH
Q 016258          314 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL---KPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       314 ~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~---~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      +.       ....+..+|.++..+|++++|+..|++++.+......   .|..+....+++.++..+|+.
T Consensus       190 ~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  252 (330)
T 3hym_B          190 PE-------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY  252 (330)
T ss_dssp             TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred             CC-------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence            22       2456788999999999999999999999999877622   256667788888888777653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.59  E-value=0.0028  Score=51.98  Aligned_cols=100  Identities=10%  Similarity=0.117  Sum_probs=78.6

Q ss_pred             HHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 016258          229 QLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD  308 (392)
Q Consensus       229 ~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~  308 (392)
                      .....+..++..++..|++..|+.+++.+...    .+..       ......+|.++...|++++|+..|++++++.  
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--   77 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL----NPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIELD--   77 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence            34456677888888899999999998877543    2222       2467789999999999999999999999762  


Q ss_pred             HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       309 ~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                           +.       ....+.++|.++..+|++++|+..|++++.+
T Consensus        78 -----~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~  110 (166)
T 1a17_A           78 -----KK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV  110 (166)
T ss_dssp             -----TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -----cc-------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence                 22       2446778999999999999999999988865

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.58  E-value=0.0023  Score=61.97  Aligned_cols=127  Identities=11%  Similarity=0.111  Sum_probs=76.7

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHH-----HHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLS-----VSLNKIGDLKYYGGDLQAARSYYVRSLNVR  306 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls-----~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~  306 (392)
                      ..+..++.++...|++..|+.+++....    +.+........+.     .....++.++...|++++|+..|++++++.
T Consensus       212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~  287 (450)
T 2y4t_A          212 EAFYKISTLYYQLGDHELSLSEVRECLK----LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE  287 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            4456667777778888888888877653    2333333322221     123445888888999999999999988642


Q ss_pred             HHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258          307 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       307 ~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~  378 (392)
                             +.+.   ......+..++.++..+|++++|+..|++++.+      +|++......++.++..+|
T Consensus       288 -------p~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~l~~~~~~~~  343 (450)
T 2y4t_A          288 -------PSIA---EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM------EPDNVNALKDRAEAYLIEE  343 (450)
T ss_dssp             -------CSSH---HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTT
T ss_pred             -------Ccch---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHhc
Confidence                   1111   112334566777777777777777776666543      3444444444554444433

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.58  E-value=0.00055  Score=66.30  Aligned_cols=146  Identities=10%  Similarity=0.020  Sum_probs=104.8

Q ss_pred             HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258          192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  271 (392)
Q Consensus       192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~  271 (392)
                      .-+..|++++|...+........    ...    .-.........++.+....|++..++.+++.+............  
T Consensus        64 ~y~~~~~~~~a~~~~~~~~~~~~----~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--  133 (434)
T 4b4t_Q           64 LYVTMGAKDKLREFIPHSTEYMM----QFA----KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL--  133 (434)
T ss_dssp             HHHHHTCHHHHHHHHHHTHHHHH----TSC----HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSS--
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHH----Hcc----chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHH--
Confidence            44577888888877754322211    111    00111234455666665678889999999998877777655332  


Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                         ......+|+.++...|++.+|+..+++.+.......    +    ...++..+..++.++..+|++.+|..+|++++
T Consensus       134 ---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  202 (434)
T 4b4t_Q          134 ---KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD----D----KPSLVDVHLLESKVYHKLRNLAKSKASLTAAR  202 (434)
T ss_dssp             ---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS----C----STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc----c----chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence               345788999999999999999999999887654321    1    12567788999999999999999999999999


Q ss_pred             HHHHHhh
Q 016258          352 KRLESLT  358 (392)
Q Consensus       352 ~i~e~l~  358 (392)
                      .+...+.
T Consensus       203 ~~~~~~~  209 (434)
T 4b4t_Q          203 TAANSIY  209 (434)
T ss_dssp             HHHHHSC
T ss_pred             HHhhcCC
Confidence            9988773

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.58  E-value=0.00041  Score=69.56  Aligned_cols=111  Identities=11%  Similarity=0.144  Sum_probs=88.3

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhh
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK  311 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~  311 (392)
                      ..+..++..+...|++.+|+.+++++.+.    .+..       ...+.++|.++..+|++++|+..|++++++      
T Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~----~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------   69 (477)
T 1wao_1            7 EELKTQANDYFKAKDYENAIKFYSQAIEL----NPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIEL------   69 (477)
T ss_dssp             TTSSSSSSSTTTTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence            34556677777889999999999888654    2222       357889999999999999999999999976      


Q ss_pred             cCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Q 016258          312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSV  373 (392)
Q Consensus       312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~  373 (392)
                       .+.       .+..+.++|.++..+|++++|+..|++++++      +|++.....+++.+
T Consensus        70 -~p~-------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~l~~~  117 (477)
T 1wao_1           70 -DKK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV------KPHDKDAKMKYQEC  117 (477)
T ss_dssp             -CTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCTTHHHHHHHH
T ss_pred             -CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHH
Confidence             222       2557889999999999999999999999875      56666677777776

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.55  E-value=0.00066  Score=68.61  Aligned_cols=119  Identities=14%  Similarity=0.123  Sum_probs=79.0

Q ss_pred             hhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016258          236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN  315 (392)
Q Consensus       236 ~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~  315 (392)
                      .++..+...|++.+|+.++++...    +.+...       .....++.++...|++++|+..|++++++       .+.
T Consensus       412 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~  473 (597)
T 2xpi_A          412 GFAHSFAIEGEHDQAISAYTTAAR----LFQGTH-------LPYLFLGMQHMQLGNILLANEYLQSSYAL-------FQY  473 (597)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHH----TTTTCS-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH----hCccch-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC
Confidence            344444455666666666655432    122221       24566777777777777777777777654       122


Q ss_pred             CCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCc-hHHHHHHHHHHHHHHH
Q 016258          316 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEE-AGLEQRRLSVLEFLNN  379 (392)
Q Consensus       316 ~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~-a~~l~~~~~~~~~l~~  379 (392)
                             ....+..++.++...|++++|+.+|++++++......+|+. +.....++.++..+|+
T Consensus       474 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~  531 (597)
T 2xpi_A          474 -------DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM  531 (597)
T ss_dssp             -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred             -------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence                   13457889999999999999999999999987766556664 5666777777766654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.55  E-value=0.00063  Score=56.93  Aligned_cols=86  Identities=15%  Similarity=0.090  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258          275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  354 (392)
Q Consensus       275 ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~  354 (392)
                      ....+..+|.++...|++++|+..|++++++.       +.       .+..+.++|.++..+|++++|+..|++++.+ 
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-   74 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-------PA-------NPIYLSNRAAAYSASGQHEKAAEDAELATVV-   74 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------Cc-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-
Confidence            44578899999999999999999999999762       22       2557889999999999999999999998875 


Q ss_pred             HHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          355 ESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       355 e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                           +|.+.....+++.++..+|+.
T Consensus        75 -----~p~~~~~~~~lg~~~~~~g~~   95 (164)
T 3sz7_A           75 -----DPKYSKAWSRLGLARFDMADY   95 (164)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCH
T ss_pred             -----CCCCHHHHHHHHHHHHHccCH
Confidence                 678888888899988887764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.55  E-value=0.00093  Score=67.49  Aligned_cols=118  Identities=17%  Similarity=0.122  Sum_probs=88.2

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  312 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~  312 (392)
                      .+..++.++...|++.+|+.++++..+.....+..-..    ....+..++.++...|++++|+..|++++++.      
T Consensus       477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------  546 (597)
T 2xpi_A          477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP----WAATWANLGHAYRKLKMYDAAIDALNQGLLLS------  546 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG----GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------
Confidence            34455667767888899999998887665554332211    13478899999999999999999999998762      


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 016258          313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVL  374 (392)
Q Consensus       313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~  374 (392)
                       +.       ....+..++.++...|++++|+..|++++++      +|++......++.+|
T Consensus       547 -p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~  594 (597)
T 2xpi_A          547 -TN-------DANVHTAIALVYLHKKIPGLAITHLHESLAI------SPNEIMASDLLKRAL  594 (597)
T ss_dssp             -SC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHTT
T ss_pred             -CC-------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCChHHHHHHHHHH
Confidence             22       2457788999999999999999999888764      677766666665554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.54  E-value=0.00075  Score=51.74  Aligned_cols=83  Identities=13%  Similarity=0.129  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258          277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  356 (392)
Q Consensus       277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~  356 (392)
                      ..+..+|.++...|++++|+..|++++++       .+.       ....+.++|.++..+|++++|+..|++++.    
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----   66 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITA-------QPQ-------NPVGYSNKAMALIKLGEYTQAIQMCQQGLR----   66 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCC-------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----
Confidence            46788999999999999999999999976       222       145678999999999999999999888875    


Q ss_pred             hhcCCCc------hHHHHHHHHHHHHHHH
Q 016258          357 LTLKPEE------AGLEQRRLSVLEFLNN  379 (392)
Q Consensus       357 l~~~p~~------a~~l~~~~~~~~~l~~  379 (392)
                        .+|++      .....+++.++..+|+
T Consensus        67 --~~p~~~~~~~~~~~~~~~~~~~~~~~~   93 (111)
T 2l6j_A           67 --YTSTAEHVAIRSKLQYRLELAQGAVGS   93 (111)
T ss_dssp             --SCSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred             --hCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence              35665      6667788888888773

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.52  E-value=0.0019  Score=59.88  Aligned_cols=128  Identities=11%  Similarity=0.097  Sum_probs=81.7

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHH-----HHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLS-----VSLNKIGDLKYYGGDLQAARSYYVRSLNVR  306 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls-----~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~  306 (392)
                      ..+..++.++...|++..|+.+++.+...    .+........+.     ...-.++.++...|++++|+..|++++++.
T Consensus       189 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  264 (359)
T 3ieg_A          189 EAFYKISTLYYQLGDHELSLSEVRECLKL----DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE  264 (359)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            34556667777788888888887766432    333332211111     123345788888899999999999888642


Q ss_pred             HHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          307 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       307 ~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                             +.+.   .-....+..+|.++..+|++++|+..|++++.+      +|++.....+++.++..+|+
T Consensus       265 -------~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~  321 (359)
T 3ieg_A          265 -------PSVA---EYTVRSKERICHCFSKDEKPVEAIRICSEVLQM------EPDNVNALKDRAEAYLIEEM  321 (359)
T ss_dssp             -------CSSH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTC
T ss_pred             -------CCch---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCC
Confidence                   2211   112334566788888888888888888777664      56666667777777766554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.51  E-value=0.0039  Score=57.11  Aligned_cols=154  Identities=14%  Similarity=0.084  Sum_probs=95.0

Q ss_pred             hhHHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCC
Q 016258          187 VQQAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPM  266 (392)
Q Consensus       187 ~c~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~  266 (392)
                      ...+...+..|++++|...+....       ...+       .+...+..++.++...|++..|+.+++.+...    .+
T Consensus        25 ~~~a~~~~~~~~~~~A~~~~~~~~-------~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~   86 (327)
T 3cv0_A           25 MEEGLSMLKLANLAEAALAFEAVC-------QAAP-------EREEAWRSLGLTQAENEKDGLAIIALNHARML----DP   86 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH-------HHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CT
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHH-------HhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----Cc
Confidence            334456778899999988875321       1112       22334555677776788888888888776543    22


Q ss_pred             CChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH--------------------------------------
Q 016258          267 DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD--------------------------------------  308 (392)
Q Consensus       267 ~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~--------------------------------------  308 (392)
                      ...       .....++.++...|++++|+..|+++++....                                      
T Consensus        87 ~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  159 (327)
T 3cv0_A           87 KDI-------AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT  159 (327)
T ss_dssp             TCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHH
T ss_pred             CCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHH
Confidence            222       35667788888888888888888887753111                                      


Q ss_pred             ----HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258          309 ----AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       309 ----~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~  378 (392)
                          +....+       +....+..+|.++..+|++++|+..|++++.+      .|++......++.++..+|
T Consensus       160 ~~~~~~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~  220 (327)
T 3cv0_A          160 LLHAALEMNP-------NDAQLHASLGVLYNLSNNYDSAAANLRRAVEL------RPDDAQLWNKLGATLANGN  220 (327)
T ss_dssp             HHHHHHHHST-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhCC-------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcC
Confidence                111111       11334566788888888888888887776653      3455555555555555444

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.50  E-value=0.0026  Score=48.64  Aligned_cols=110  Identities=14%  Similarity=0.204  Sum_probs=81.5

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  312 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~  312 (392)
                      .+..++..+...|++..++.+++.+...    .+..       ......+|.++...|++++|+..|++++++.      
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------   68 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKL----DPHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------   68 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHH----CCCc-------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC------
Confidence            4455677777889999999998877543    2222       2367788999999999999999999998752      


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Q 016258          313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSV  373 (392)
Q Consensus       313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~  373 (392)
                       +.       ....+..+|.++..+|++++|+..|++++.      .+|.+......++.+
T Consensus        69 -~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           69 -PD-------WGKGYSRKAAALEFLNRFEEAKRTYEEGLK------HEANNPQLKEGLQNM  115 (118)
T ss_dssp             -TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------TCTTCHHHHHHHHHH
T ss_pred             -cc-------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH------cCCCCHHHHHHHHHh
Confidence             22       244677899999999999999988887764      356666666655554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.50  E-value=0.00042  Score=60.14  Aligned_cols=117  Identities=16%  Similarity=0.076  Sum_probs=88.0

Q ss_pred             hhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCC
Q 016258          235 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS  314 (392)
Q Consensus       235 ~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~  314 (392)
                      ..++......|++..|+.+++.+      +.. .       .....++|.++...|++++|+..|++++++.       +
T Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~a------~~~-~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------~   68 (213)
T 1hh8_A           10 WNEGVLAADKKDWKGALDAFSAV------QDP-H-------SRICFNIGCMYTILKNMTEAEKAFTRSINRD-------K   68 (213)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTS------SSC-C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHH------cCC-C-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------c
Confidence            34566766788998888887654      222 1       2478899999999999999999999999762       2


Q ss_pred             CCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh----------cCCCchHHHHHHHHHHHHHHH
Q 016258          315 NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT----------LKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       315 ~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~----------~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      .       .+..+.++|.++..+|++++|+..|++++.+...-.          ..|.......+++.++..+|+
T Consensus        69 ~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  136 (213)
T 1hh8_A           69 H-------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE  136 (213)
T ss_dssp             T-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC
T ss_pred             c-------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC
Confidence            2       245678999999999999999999999987643321          334555777788888776664

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.49  E-value=0.0015  Score=56.30  Aligned_cols=122  Identities=9%  Similarity=0.020  Sum_probs=86.6

Q ss_pred             HHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHH
Q 016258          230 LGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYG-GDLQAARSYYVRSLNVRRD  308 (392)
Q Consensus       230 h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~-g~l~~A~~~ye~sL~i~~~  308 (392)
                      ....+..++.++...|++..|+.+++.+...    .+..       ......++.++... |++++|+..|+++++    
T Consensus        41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----  105 (225)
T 2vq2_A           41 NELAWLVRAEIYQYLKVNDKAQESFRQALSI----KPDS-------AEINNNYGWFLCGRLNRPAESMAYFDKALA----  105 (225)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----
T ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCC-------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----
Confidence            3445566667776778888888877766443    2222       23567788888888 899988888888775    


Q ss_pred             HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       309 ~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                          .+..    .+....+..+|.++..+|++++|+..|++++.+      .|.+......++.++..+|+.
T Consensus       106 ----~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A          106 ----DPTY----PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA------QPQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             ----STTC----SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHTCH
T ss_pred             ----CcCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCH
Confidence                1111    145667788999999999999999888887653      566677788888888777654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.47  E-value=0.00055  Score=60.21  Aligned_cols=143  Identities=11%  Similarity=0.104  Sum_probs=93.9

Q ss_pred             HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258          192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  271 (392)
Q Consensus       192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~  271 (392)
                      ..+..|++++|...+...       +...+.       ....+..++.++...|++..|+.+++.+...    .+..   
T Consensus        32 ~~~~~~~~~~A~~~~~~~-------l~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~---   90 (243)
T 2q7f_A           32 RGSEFGDYEKAAEAFTKA-------IEENKE-------DAIPYINFANLLSSVNELERALAFYDKALEL----DSSA---   90 (243)
T ss_dssp             ----------CCTTHHHH-------HTTCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC---
T ss_pred             HHHHhhCHHHHHHHHHHH-------HHhCcc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCcc---
Confidence            455677777777766422       112222       2345566777877889999999988877544    2222   


Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                          ......++.++...|++++|+..|++++++.       +..       ...+..+|.++..+|++++|+..|++++
T Consensus        91 ----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~  152 (243)
T 2q7f_A           91 ----ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-------MEN-------GDLFYMLGTVLVKLEQPKLALPYLQRAV  152 (243)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------CCS-------HHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence                2457788999999999999999999998752       211       3356789999999999999999999887


Q ss_pred             HHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          352 KRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       352 ~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      .+      .|.+..+...++.++..+|+
T Consensus       153 ~~------~~~~~~~~~~l~~~~~~~~~  174 (243)
T 2q7f_A          153 EL------NENDTEARFQFGMCLANEGM  174 (243)
T ss_dssp             HH------CTTCHHHHHHHHHHHHHHTC
T ss_pred             Hh------CCccHHHHHHHHHHHHHcCC
Confidence            64      45556666677777666553

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.47  E-value=0.00071  Score=65.92  Aligned_cols=121  Identities=9%  Similarity=0.023  Sum_probs=95.4

Q ss_pred             HHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHH
Q 016258          228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGD-LQAARSYYVRSLNVR  306 (392)
Q Consensus       228 ~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~-l~~A~~~ye~sL~i~  306 (392)
                      |.+...+.+++.+....|++.+|+..++.+..    +.+...       .++..+|.++..+|+ +++|+..|+++|++ 
T Consensus        94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~----l~P~~~-------~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-  161 (382)
T 2h6f_A           94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIE----LNAANY-------TVWHFRRVLLKSLQKDLHEEMNYITAIIEE-  161 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCTTCH-------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-
T ss_pred             hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHH----hCccCH-------HHHHHHHHHHHHcccCHHHHHHHHHHHHHH-
Confidence            55566777888888788999999999887753    334333       367889999999996 99999999999865 


Q ss_pred             HHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          307 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       307 ~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                            .+.       ....+.++|.++..+|++++|+..|++++.      .+|.+.....+++.++..+|+
T Consensus       162 ------~P~-------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~------ldP~~~~a~~~lg~~~~~~g~  215 (382)
T 2h6f_A          162 ------QPK-------NYQVWHHRRVLVEWLRDPSQELEFIADILN------QDAKNYHAWQHRQWVIQEFKL  215 (382)
T ss_dssp             ------CTT-------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHH------HCTTCHHHHHHHHHHHHHHTC
T ss_pred             ------CCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCccCHHHHHHHHHHHHHcCC
Confidence                  232       255788999999999999999999998875      367777777888888777764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.45  E-value=0.0023  Score=62.01  Aligned_cols=115  Identities=11%  Similarity=0.017  Sum_probs=88.0

Q ss_pred             hhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 016258          238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP  317 (392)
Q Consensus       238 c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~  317 (392)
                      +..+...|++..|+.+++.....    .+....   ........++.++...|++++|+..|++++++       .+.  
T Consensus       264 ~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-------~p~--  327 (450)
T 2y4t_A          264 AEELIRDGRYTDATSKYESVMKT----EPSIAE---YTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-------EPD--  327 (450)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH----CCSSHH---HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------CTT--
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhc----CCcchH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------Ccc--
Confidence            67777889999999888877542    333332   23457888999999999999999999999876       222  


Q ss_pred             cchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          318 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       318 ~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                           ....+..+|.++..+|++++|+..|+++++      .+|++......++.+...+++
T Consensus       328 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~l~~~~~~~~~  378 (450)
T 2y4t_A          328 -----NVNALKDRAEAYLIEEMYDEAIQDYETAQE------HNENDQQIREGLEKAQRLLKQ  378 (450)
T ss_dssp             -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------TSSSCHHHHHHHHHHHHHHHH
T ss_pred             -----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------hCcchHHHHHHHHHHHHHhhc
Confidence                 245678899999999999999999888876      367777777777766555544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.45  E-value=0.0025  Score=51.25  Aligned_cols=113  Identities=15%  Similarity=0.153  Sum_probs=83.8

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  312 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~  312 (392)
                      .+..++..+...|++..|+.+++.+..    +.+..    .........++.++...|++++|+..|++++++       
T Consensus        30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------   94 (148)
T 2dba_A           30 QLRKEGNELFKCGDYGGALAAYTQALG----LDATP----QDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-------   94 (148)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHT----SCCCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH----Hcccc----hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-------
Confidence            455667777788999999998877643    22322    223567889999999999999999999999875       


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Q 016258          313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSV  373 (392)
Q Consensus       313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~  373 (392)
                      .+.       ....+.++|.++..+|++++|+..|++++.+      +|.+..+...++.+
T Consensus        95 ~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~  142 (148)
T 2dba_A           95 DGG-------DVKALYRRSQALEKLGRLDQAVLDLQRCVSL------EPKNKVFQEALRNI  142 (148)
T ss_dssp             TSC-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CSSCHHHHHHHHHH
T ss_pred             Ccc-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHH
Confidence            222       1446778999999999999999999888764      46655555555444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.44  E-value=0.0025  Score=59.04  Aligned_cols=116  Identities=11%  Similarity=0.029  Sum_probs=89.1

Q ss_pred             hhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 016258          238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVP  317 (392)
Q Consensus       238 c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~  317 (392)
                      +..+...|++..|+.+++.....    .+....   ........+|.++...|++++|+..|++++++       .+.  
T Consensus       241 a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~~~--  304 (359)
T 3ieg_A          241 AEELIRDGRYTDATSKYESVMKT----EPSVAE---YTVRSKERICHCFSKDEKPVEAIRICSEVLQM-------EPD--  304 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH----CCSSHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT--
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhc----CCCchH---HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------Ccc--
Confidence            55666788889999888776543    233332   23445778999999999999999999999876       222  


Q ss_pred             cchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          318 SQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       318 ~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                           ....+..+|.++..+|++++|+..|++++++      +|++......++.+...+++.
T Consensus       305 -----~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~l~~~~~~~~~~  356 (359)
T 3ieg_A          305 -----NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH------NENDQQIREGLEKAQRLLKQS  356 (359)
T ss_dssp             -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------CTTCHHHHHHHHHHHHHHHHH
T ss_pred             -----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHHHHh
Confidence                 2456788999999999999999998888754      688888888888888777654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.44  E-value=0.0019  Score=49.61  Aligned_cols=67  Identities=7%  Similarity=0.121  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258          277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  356 (392)
Q Consensus       277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~  356 (392)
                      ..+..+|.++...|++++|+..|++++++       .+..       ...+..+|.++..+|++++|+..|++++.+...
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVET-------DPDY-------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            35778999999999999999999999975       2322       336778999999999999999999999998765


Q ss_pred             h
Q 016258          357 L  357 (392)
Q Consensus       357 l  357 (392)
                      .
T Consensus        74 ~   74 (100)
T 3ma5_A           74 E   74 (100)
T ss_dssp             H
T ss_pred             C
Confidence            5

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.43  E-value=0.0018  Score=64.30  Aligned_cols=64  Identities=14%  Similarity=-0.005  Sum_probs=45.2

Q ss_pred             cCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          290 GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       290 g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                      +.+..+...|.+++...+.+.+..+.+......++..+..+|.++...|++++|+..|++++.+
T Consensus       209 ~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~  272 (537)
T 3fp2_A          209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL  272 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence            3445555566667777777777777765555667778888999999999999999888776653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.41  E-value=0.00093  Score=57.89  Aligned_cols=135  Identities=14%  Similarity=0.000  Sum_probs=94.9

Q ss_pred             HHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChh
Q 016258          191 MRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLE  270 (392)
Q Consensus       191 ~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e  270 (392)
                      ...+..|++++|...+....          ..       ....+..++.++...|++..|+.+++.+...    .+..  
T Consensus        14 ~~~~~~~~~~~A~~~~~~a~----------~~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~~~--   70 (213)
T 1hh8_A           14 VLAADKKDWKGALDAFSAVQ----------DP-------HSRICFNIGCMYTILKNMTEAEKAFTRSINR----DKHL--   70 (213)
T ss_dssp             HHHHHTTCHHHHHHHHHTSS----------SC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC--
T ss_pred             HHHHHhCCHHHHHHHHHHHc----------CC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----Cccc--
Confidence            35667889999988876331          11       1245667788887899999999999887544    2222  


Q ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC--CcchhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016258          271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV--PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ  348 (392)
Q Consensus       271 ~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~--~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~  348 (392)
                           ...+.++|.++...|++++|+..|++++++........-..  ..........+.++|.++..+|++++|+..|+
T Consensus        71 -----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  145 (213)
T 1hh8_A           71 -----AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA  145 (213)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -----hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence                 24678999999999999999999999987532100000000  00112345678899999999999999999999


Q ss_pred             HHHHH
Q 016258          349 EAIKR  353 (392)
Q Consensus       349 eal~i  353 (392)
                      +++.+
T Consensus       146 ~al~~  150 (213)
T 1hh8_A          146 LATSM  150 (213)
T ss_dssp             HHHTT
T ss_pred             HHHHc
Confidence            88765

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.40  E-value=0.001  Score=61.11  Aligned_cols=124  Identities=21%  Similarity=0.173  Sum_probs=91.3

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhh
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK  311 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~  311 (392)
                      ..+..++.++...|++..|+.+++.+...    .+...       .....++.++...|++++|+..|++++++.     
T Consensus       173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----  236 (327)
T 3cv0_A          173 QLHASLGVLYNLSNNYDSAAANLRRAVEL----RPDDA-------QLWNKLGATLANGNRPQEALDAYNRALDIN-----  236 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Confidence            45666777877889999999988877543    22222       357889999999999999999999998752     


Q ss_pred             cCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCC------chHHHHHHHHHHHHHHHH
Q 016258          312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPE------EAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~------~a~~l~~~~~~~~~l~~~  380 (392)
                        +.       ....+..+|.++..+|++++|+..|++++.+.........      .......++.++..+|+.
T Consensus       237 --~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  302 (327)
T 3cv0_A          237 --PG-------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP  302 (327)
T ss_dssp             --TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred             --CC-------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence              21       2446778999999999999999999999876543211001      556677788888777654

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.38  E-value=0.00012  Score=54.95  Aligned_cols=45  Identities=29%  Similarity=0.604  Sum_probs=37.2

Q ss_pred             CCeeccccccccc-cCceeccCC-----CcchHHhHHhc------CCCCCCCCCccc
Q 016258           88 GPLSCMICQALLF-ECSKCTPCS-----HVYCKACISRF------KDCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~-~~p~~~~C~-----h~fC~~Ci~~~------~~CP~C~~~~~~  132 (392)
                      +...|.||++.+. +.+.++||.     |.|...||.+|      ..||+|+..+..
T Consensus        14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            4578999997764 358889996     99999999999      269999998764

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.37  E-value=0.0024  Score=63.26  Aligned_cols=164  Identities=11%  Similarity=0.044  Sum_probs=88.9

Q ss_pred             hcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHh---------CC--
Q 016258          197 QNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMK---------LP--  265 (392)
Q Consensus       197 g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~---------L~--  265 (392)
                      +++..|...+..+.......+...+.+.......+..+..++......|++..|+.+++.+......         +.  
T Consensus       209 ~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~  288 (537)
T 3fp2_A          209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLAD  288 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCC
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            3344444444444444444455455554444444555556666655666666666666554322100         00  


Q ss_pred             -CCChhHH----------HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHH
Q 016258          266 -MDDLEII----------HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVD  334 (392)
Q Consensus       266 -~~~~e~~----------~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~  334 (392)
                       +...+..          .........+|.++...|++++|+..|++++++       .+..       ...+..+|.++
T Consensus       289 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~~~~-------~~~~~~la~~~  354 (537)
T 3fp2_A          289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL-------NPEN-------VYPYIQLACLL  354 (537)
T ss_dssp             SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------SHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCC-------HHHHHHHHHHH
Confidence             0000000          001234556666666677777777777666653       1211       23566778888


Q ss_pred             HhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          335 RSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       335 ~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      ..+|++++|+..|++++.+      +|.+.....+++.++..+|+.
T Consensus       355 ~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~  394 (537)
T 3fp2_A          355 YKQGKFTESEAFFNETKLK------FPTLPEVPTFFAEILTDRGDF  394 (537)
T ss_dssp             HHTTCHHHHHHHHHHHHHH------CTTCTHHHHHHHHHHHHTTCH
T ss_pred             HHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHhCCH
Confidence            8888888888777777654      567677777777777766653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.36  E-value=0.0046  Score=48.09  Aligned_cols=114  Identities=21%  Similarity=0.305  Sum_probs=76.1

Q ss_pred             HhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcC
Q 016258          234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH  313 (392)
Q Consensus       234 L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~  313 (392)
                      +..++..+...|++..++.+++.....    .+..       ......++.++...|++++|+..|++++...       
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------   65 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALEL----DPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------   65 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHc----CCcc-------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-------
Confidence            344566666778888888887766432    2222       2345677888888899999999988887541       


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258          314 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       314 ~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~  378 (392)
                      +.       ....+..++.++...|++++|+..|++++.+      .|........++.++..+|
T Consensus        66 ~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~  117 (136)
T 2fo7_A           66 PR-------SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAEAWYNLGNAYYKQG  117 (136)
T ss_dssp             TT-------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTT
T ss_pred             CC-------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHHc
Confidence            11       1335667888888999999888888877754      3444555555666655444

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.36  E-value=0.0023  Score=53.03  Aligned_cols=85  Identities=11%  Similarity=0.099  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258          276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  355 (392)
Q Consensus       276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e  355 (392)
                      ...+..+|.++...|++++|+..|++++.+       .+.       ....+.++|.++..+|++++|+..|++++.+  
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--   84 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL-------DHY-------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--   84 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-------Ccc-------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence            346778899999999999999999998864       232       2446778999999999999999999998764  


Q ss_pred             HhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          356 SLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       356 ~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                          +|++.....+++.++..+|+.
T Consensus        85 ----~p~~~~~~~~lg~~~~~~g~~  105 (148)
T 2vgx_A           85 ----DIXEPRFPFHAAECLLQXGEL  105 (148)
T ss_dssp             ----STTCTHHHHHHHHHHHHTTCH
T ss_pred             ----CCCCchHHHHHHHHHHHcCCH
Confidence                577888888889888877764

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.35  E-value=7.2e-05  Score=57.60  Aligned_cols=43  Identities=28%  Similarity=0.698  Sum_probs=37.2

Q ss_pred             eeccccccccccCceeccCCCcchHHhHHhc-----CCCCCCCCCccc
Q 016258           90 LSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEK  132 (392)
Q Consensus        90 ~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~  132 (392)
                      .+|++|.-.+..-.+++||.|.||..|+..|     ..||.|+.++..
T Consensus         2 hfC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            2 HFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             CBCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             eecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            4699998887767999999999999999876     359999998776

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.35  E-value=0.0019  Score=57.35  Aligned_cols=64  Identities=13%  Similarity=0.057  Sum_probs=49.8

Q ss_pred             HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258          231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV  305 (392)
Q Consensus       231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i  305 (392)
                      ...+..++..+...|++..|+.+++.+...    .+..       ......++.++...|++++|+..|++++++
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  100 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI----DPSS-------ADAHAALAVVFQTEMEPKLADEEYRKALAS  100 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            445667788877889999999998877544    2222       246778899999999999999999998875

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.33  E-value=0.0056  Score=56.79  Aligned_cols=118  Identities=16%  Similarity=0.082  Sum_probs=73.8

Q ss_pred             HhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcC
Q 016258          234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH  313 (392)
Q Consensus       234 L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~  313 (392)
                      +..++.+...+|++..|+..++.....    .+...  ...+...   +..+....|++++|+..|+++++.       .
T Consensus       133 ~~~l~~~~~~~g~~~~A~~~l~~~~~~----~p~~~--~~~l~~a---~~~l~~~~~~~~eA~~~~~~~l~~-------~  196 (291)
T 3mkr_A          133 MAMTVQILLKLDRLDLARKELKKMQDQ----DEDAT--LTQLATA---WVSLAAGGEKLQDAYYIFQEMADK-------C  196 (291)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH--HHHHHHH---HHHHHHCTTHHHHHHHHHHHHHHH-------S
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhh----CcCcH--HHHHHHH---HHHHHhCchHHHHHHHHHHHHHHh-------C
Confidence            334555555677777777777665433    22221  1111111   112233346777777777776643       3


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          314 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       314 ~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      +.       -+..+..+|.++..+|++++|+..|++++.      .+|+++..+.+++.++..+|+.
T Consensus       197 p~-------~~~~~~~la~~~~~~g~~~eA~~~l~~al~------~~p~~~~~l~~l~~~~~~~g~~  250 (291)
T 3mkr_A          197 SP-------TLLLLNGQAACHMAQGRWEAAEGVLQEALD------KDSGHPETLINLVVLSQHLGKP  250 (291)
T ss_dssp             CC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCCC
Confidence            32       144677888999999999999888888775      3688888888888877776653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.33  E-value=0.00065  Score=64.76  Aligned_cols=128  Identities=13%  Similarity=0.055  Sum_probs=81.0

Q ss_pred             HHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCC--CCChh----HHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 016258          228 SQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLP--MDDLE----IIHTLSVSLNKIGDLKYYGGDLQAARSYYVR  301 (392)
Q Consensus       228 ~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~--~~~~e----~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~  301 (392)
                      +.....+...+..++..|++..|+..|+.+........  .....    ........+.+++.++..+|++++|+.+|++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34455677788888889999999999988754421100  00011    1112224788999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 016258          302 SLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLE  375 (392)
Q Consensus       302 sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~  375 (392)
                      +|++       .+.       .+..+.++|.++..+|++++|+..|++++.+      +|.+......++.+..
T Consensus       256 al~~-------~p~-------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l------~p~~~~a~~~L~~l~~  309 (338)
T 2if4_A          256 VLTE-------EEK-------NPKALFRRGKAKAELGQMDSARDDFRKAQKY------APDDKAIRRELRALAE  309 (338)
T ss_dssp             HHHH-------CTT-------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------
T ss_pred             HHHh-------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHH
Confidence            9975       222       2456889999999999999999998888765      3455555555555433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.32  E-value=0.0012  Score=63.90  Aligned_cols=103  Identities=17%  Similarity=0.139  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCC-CC-CcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016258          272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS-NV-PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE  349 (392)
Q Consensus       272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~-~~-~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e  349 (392)
                      .......+..+|..+...|++++|+..|+++|++......... +. .......+..+.++|.++..+|++++|+.+|++
T Consensus       219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  298 (370)
T 1ihg_A          219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE  298 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            3345567889999999999999999999999997655321100 00 001234567788999999999999999999998


Q ss_pred             HHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          350 AIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       350 al~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      ++++      +|+++....+++.+|..+++.
T Consensus       299 al~~------~p~~~~a~~~lg~~~~~~g~~  323 (370)
T 1ihg_A          299 ALEI------DPSNTKALYRRAQGWQGLKEY  323 (370)
T ss_dssp             HHTT------CTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHh------CchhHHHHHHHHHHHHHccCH
Confidence            8863      688888888999998887754

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.31  E-value=0.0036  Score=48.70  Aligned_cols=79  Identities=14%  Similarity=0.140  Sum_probs=63.3

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016258          280 NKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL  359 (392)
Q Consensus       280 ~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~  359 (392)
                      -.||...+..|++..|+..|+++++.....    ..   .-...+..+..||.++..+|+++.|+.+|++++.+      
T Consensus         9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~----~~---~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l------   75 (104)
T 2v5f_A            9 FELGKVAYTEADYYHTELWMEQALRQLDEG----EI---STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL------   75 (104)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----CC---CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHhhhcc----CC---CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------
Confidence            478999999999999999999999765321    10   11245667899999999999999999999988753      


Q ss_pred             CCCchHHHHHHH
Q 016258          360 KPEEAGLEQRRL  371 (392)
Q Consensus       360 ~p~~a~~l~~~~  371 (392)
                      .|++...+.++.
T Consensus        76 ~P~~~~~~~n~~   87 (104)
T 2v5f_A           76 DPEHQRANGNLK   87 (104)
T ss_dssp             CTTCHHHHHHHH
T ss_pred             CCCCHHHHhhHH
Confidence            688888888887

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.31  E-value=0.00092  Score=63.58  Aligned_cols=103  Identities=12%  Similarity=0.027  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCc-chhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258          272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPS-QVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA  350 (392)
Q Consensus       272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~-~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea  350 (392)
                      .......+.++|.++...|++++|+..|++++++.........+... .....+..+.++|.++..+|++++|+..|+++
T Consensus       143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  222 (336)
T 1p5q_A          143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA  222 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44456788999999999999999999999999874321100000000 01123567889999999999999999999999


Q ss_pred             HHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          351 IKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       351 l~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      +.+      +|.++..+.+++.+|..+++.
T Consensus       223 l~~------~p~~~~a~~~lg~~~~~~g~~  246 (336)
T 1p5q_A          223 LEL------DSNNEKGLSRRGEAHLAVNDF  246 (336)
T ss_dssp             HHH------CTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHh------CCCcHHHHHHHHHHHHHCCCH
Confidence            875      678888888999988877653

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.30  E-value=0.0023  Score=51.04  Aligned_cols=85  Identities=14%  Similarity=0.096  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258          276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  355 (392)
Q Consensus       276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e  355 (392)
                      ...+..+|.++...|++++|+..|++++++.       +.       ....+.++|.++..+|+++.|+..|++++.+  
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--   72 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PL-------VAVYYTNRALCYLKMQQPEQALADCRRALEL--   72 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-------cC-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence            3467889999999999999999999999762       22       2456788999999999999999999988864  


Q ss_pred             HhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          356 SLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       356 ~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                          +|.......+++.++..+|+.
T Consensus        73 ----~p~~~~~~~~l~~~~~~~~~~   93 (137)
T 3q49_B           73 ----DGQSVKAHFFLGQCQLEMESY   93 (137)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCH
T ss_pred             ----CchhHHHHHHHHHHHHHHhhH
Confidence                577777888888888777653

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.29  E-value=0.0039  Score=48.57  Aligned_cols=89  Identities=11%  Similarity=0.070  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258          277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  356 (392)
Q Consensus       277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~  356 (392)
                      ..+..+|.++...|++++|+..|++++++       .+.       ....+.++|.++..+|++++|+..|++++.+...
T Consensus        20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~   85 (115)
T 2kat_A           20 LLRFTLGKTYAEHEQFDAALPHLRAALDF-------DPT-------YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS   85 (115)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHH-------CCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            36788999999999999999999999975       222       2446788999999999999999999999988765


Q ss_pred             hhcCCCchHHHHHHHHHHHHHHHHhhc
Q 016258          357 LTLKPEEAGLEQRRLSVLEFLNNQLSE  383 (392)
Q Consensus       357 l~~~p~~a~~l~~~~~~~~~l~~~~~~  383 (392)
                      .    .+......+...+..+++....
T Consensus        86 ~----~~~~~~~~l~~~l~~l~~~~~~  108 (115)
T 2kat_A           86 R----GDQQVVKELQVFLRRLAREDAL  108 (115)
T ss_dssp             H----TCHHHHHHHHHHHHHHHHHHHH
T ss_pred             c----ccHHHHHHHHHHHHHhccccCc
Confidence            4    2334456666666667665544

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.29  E-value=0.0028  Score=52.64  Aligned_cols=127  Identities=17%  Similarity=0.106  Sum_probs=91.4

Q ss_pred             HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258          190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL  269 (392)
Q Consensus       190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~  269 (392)
                      +...+..|++++|...+....       ...+.       ....+..++.++...|++..|..+++.+...    .+...
T Consensus        49 ~~~~~~~~~~~~A~~~~~~~~-------~~~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~  110 (186)
T 3as5_A           49 GIAYVKTGAVDRGTELLERSL-------ADAPD-------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEA----NPINF  110 (186)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH-------HHCTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHH-------hcCCC-------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CcHhH
Confidence            335567888888887765321       11222       2234556677777889999999888876543    22222


Q ss_pred             hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016258          270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQE  349 (392)
Q Consensus       270 e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~e  349 (392)
                             .....++.++...|++++|+..|+++++..       +.       ....+..+|.++..+|++++|+..|++
T Consensus       111 -------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~  169 (186)
T 3as5_A          111 -------NVRFRLGVALDNLGRFDEAIDSFKIALGLR-------PN-------EGKVHRAIAFSYEQMGRHEEALPHFKK  169 (186)
T ss_dssp             -------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-------cc-------chHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                   356788999999999999999999998652       22       145677899999999999999999999


Q ss_pred             HHHHHH
Q 016258          350 AIKRLE  355 (392)
Q Consensus       350 al~i~e  355 (392)
                      ++.+..
T Consensus       170 ~~~~~~  175 (186)
T 3as5_A          170 ANELDE  175 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHcCC
Confidence            987653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.28  E-value=0.0014  Score=51.62  Aligned_cols=89  Identities=16%  Similarity=0.162  Sum_probs=64.7

Q ss_pred             hhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhh
Q 016258          243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD  322 (392)
Q Consensus       243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~d  322 (392)
                      .+|++.+|+.+++++..    +...    ..........+|.++...|++++|+..|++++++       .+.+      
T Consensus         2 ~~g~~~~A~~~~~~al~----~~~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------~p~~------   60 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIA----SGLQ----GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-------FPNH------   60 (117)
T ss_dssp             -----CCCHHHHHHHHS----SCCC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC------
T ss_pred             CCCcHHHHHHHHHHHHH----cCCC----CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCc------
Confidence            35667777777776643    1111    1233467889999999999999999999999866       2332      


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       323 la~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                       ...+.++|.++..+|++++|+..|++++.+
T Consensus        61 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   90 (117)
T 3k9i_A           61 -QALRVFYAMVLYNLGRYEQGVELLLKIIAE   90 (117)
T ss_dssp             -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             456778999999999999999999998764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.25  E-value=0.0029  Score=56.69  Aligned_cols=120  Identities=12%  Similarity=0.028  Sum_probs=90.5

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  312 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~  312 (392)
                      .+..++...+..|++..|+.+++.+...    .+....       .+..++.++...|++++|+..|+++++.     ..
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~   68 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAK----KYNSPY-------IYNRRAVCYYELAKYDLAQKDIETYFSK-----VN   68 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHT----TCCCST-------THHHHHHHHHHTTCHHHHHHHHHHHHTT-----SC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCcHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHhc-----cC
Confidence            3455677777889999999998877532    333332       5677888999999999999999998852     11


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      .+.      -.+..+..+|.++..+|++++|+..|++++.+      +|.......+++.++..+|+.
T Consensus        69 ~~~------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~  124 (272)
T 3u4t_A           69 ATK------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDR------DTTRLDMYGQIGSYFYNKGNF  124 (272)
T ss_dssp             TTT------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCTHHHHHHHHHHHHTTCH
T ss_pred             chh------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHccCH
Confidence            111      13556788999999999999999999988873      567777888888888777653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.24  E-value=0.0026  Score=49.56  Aligned_cols=123  Identities=20%  Similarity=0.310  Sum_probs=86.2

Q ss_pred             HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH
Q 016258          192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI  271 (392)
Q Consensus       192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~  271 (392)
                      ..+..|++++|...+....       ...+.+       ...+..++.++...|++..++.+++.....    .+...  
T Consensus        10 ~~~~~~~~~~A~~~~~~~~-------~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~--   69 (136)
T 2fo7_A           10 AYYKQGDYDEAIEYYQKAL-------ELDPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPRSA--   69 (136)
T ss_dssp             HHHHHTCHHHHHHHHHHHH-------HHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCH--
T ss_pred             HHHHcCcHHHHHHHHHHHH-------HcCCcc-------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHH----CCCch--
Confidence            4456788888887775321       111222       234455677776788899999888776443    22222  


Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                           .....++.++...|++++|+..|++++++.       +.       ....+..++.++...|++++|+..|++++
T Consensus        70 -----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~  130 (136)
T 2fo7_A           70 -----EAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PR-------SAEAWYNLGNAYYKQGDYDEAIEYYQKAL  130 (136)
T ss_dssp             -----HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CC-------ChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence                 346678999999999999999999988642       21       13356678999999999999999999887


Q ss_pred             HH
Q 016258          352 KR  353 (392)
Q Consensus       352 ~i  353 (392)
                      .+
T Consensus       131 ~~  132 (136)
T 2fo7_A          131 EL  132 (136)
T ss_dssp             HH
T ss_pred             cc
Confidence            64

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.22  E-value=0.0021  Score=50.20  Aligned_cols=90  Identities=13%  Similarity=0.030  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258          276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  355 (392)
Q Consensus       276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e  355 (392)
                      ...+..+|.++...|++++|+..|+++++..       +.       ....+.++|.++..+|++++|+..|++++.+..
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~   69 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-------PT-------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR   69 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------Cc-------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence            4567889999999999999999999998752       22       145677899999999999999999999998776


Q ss_pred             Hh-hcCCCchHHHHHHHHHHHHHHH
Q 016258          356 SL-TLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       356 ~l-~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      .. ...+.......+++.++..+++
T Consensus        70 ~~~~~~~~~~~~~~~la~~~~~~~~   94 (131)
T 1elr_A           70 ENREDYRQIAKAYARIGNSYFKEEK   94 (131)
T ss_dssp             HSTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhcc
Confidence            43 1111125556677777766654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.19  E-value=0.0041  Score=57.47  Aligned_cols=125  Identities=8%  Similarity=-0.018  Sum_probs=88.6

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-------
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN-------  304 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~-------  304 (392)
                      ..+..++......|++..|+.+++++...    .+...       .....++.++...|++++|+..|++++.       
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~P~~~-------~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~  186 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQL----SNQNG-------EIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY  186 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TTSCH-------HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHh----CCcch-------hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH
Confidence            34455667766889999999888776443    33333       3567888899999999999999888643       


Q ss_pred             --------------------HHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCc-
Q 016258          305 --------------------VRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEE-  363 (392)
Q Consensus       305 --------------------i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~-  363 (392)
                                          ..+++....++       -...+.++|.++...|++++|+..|++++.+      +|+. 
T Consensus       187 ~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-------~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~------~p~~~  253 (287)
T 3qou_A          187 QGLVAQIELLXQAADTPEIQQLQQQVAENPE-------DAALATQLALQLHQVGRNEEALELLFGHLRX------DLTAA  253 (287)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTGG
T ss_pred             HHHHHHHHHHhhcccCccHHHHHHHHhcCCc-------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------ccccc
Confidence                                11222233333       2445678999999999999999888877764      4555 


Q ss_pred             -hHHHHHHHHHHHHHHHH
Q 016258          364 -AGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       364 -a~~l~~~~~~~~~l~~~  380 (392)
                       .....+++.++..+|+.
T Consensus       254 ~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          254 DGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             GGHHHHHHHHHHHHHCTT
T ss_pred             cchHHHHHHHHHHHcCCC
Confidence             66788888888887753

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.18  E-value=0.0041  Score=49.53  Aligned_cols=82  Identities=9%  Similarity=-0.020  Sum_probs=67.1

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258          279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT  358 (392)
Q Consensus       279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~  358 (392)
                      .-.+|..+...|++++|+..|++++++       .+.       -+..+..+|.++..+|++++|+..|++++.+     
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~-------~P~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----   80 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQK-------EPE-------REEAWRSLGLTQAENEKDGLAIIALNHARML-----   80 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-------STT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH-------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            456788888899999999999998864       333       2456778999999999999999998888764     


Q ss_pred             cCCCchHHHHHHHHHHHHHHHH
Q 016258          359 LKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       359 ~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                       +|++.....+++.++..+|+.
T Consensus        81 -~P~~~~~~~~la~~~~~~g~~  101 (121)
T 1hxi_A           81 -DPKDIAVHAALAVSHTNEHNA  101 (121)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHcCCH
Confidence             688888888999999888774

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.16  E-value=0.0079  Score=47.24  Aligned_cols=101  Identities=16%  Similarity=0.101  Sum_probs=74.2

Q ss_pred             HhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcC
Q 016258          234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH  313 (392)
Q Consensus       234 L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~  313 (392)
                      +...+......|++..|+.+++.....    .+...    ........+|.++...|++++|+..|++.++..       
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~----~p~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-------   69 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLEL----YPNGV----YTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-------   69 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----CSSST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH----CCCCc----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-------
Confidence            344566666889999999888776433    22222    112467789999999999999999999988642       


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          314 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       314 ~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                      +.+.    .....+.++|.++..+|++++|+..|++++..
T Consensus        70 p~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           70 PTHD----KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             TTST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            2221    23556788999999999999999998887764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.16  E-value=0.0053  Score=49.94  Aligned_cols=85  Identities=13%  Similarity=0.094  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258          276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  355 (392)
Q Consensus       276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e  355 (392)
                      ...+..+|..+...|++++|+..|++++.+       .+.+       ...+..+|.++..+|++++|+..|++++.+  
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-------~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--   81 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCML-------DHYD-------ARYFLGLGACRQSLGLYEQALQSYSYGALM--   81 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHh-------CCcc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence            346678899999999999999999988854       3322       445678999999999999999999988764  


Q ss_pred             HhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          356 SLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       356 ~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                          +|++.....+++.++..+|+.
T Consensus        82 ----~p~~~~~~~~lg~~~~~~g~~  102 (142)
T 2xcb_A           82 ----DINEPRFPFHAAECHLQLGDL  102 (142)
T ss_dssp             ----CTTCTHHHHHHHHHHHHTTCH
T ss_pred             ----CCCCcHHHHHHHHHHHHcCCH
Confidence                577778888888888877763

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.15  E-value=0.00085  Score=70.28  Aligned_cols=160  Identities=12%  Similarity=-0.015  Sum_probs=94.3

Q ss_pred             HHHHhhcHHHHHHHhhhcHH-HHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChh
Q 016258          192 RAFRAQNVESAKSRLSLCTE-DIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLE  270 (392)
Q Consensus       192 ~a~~~g~~~~A~~~~~~c~~-h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e  270 (392)
                      .++..|++++|...+....+ .+.......+.       +...+..++.....+|++.+|+..++++...    .+... 
T Consensus       400 ~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~-  467 (681)
T 2pzi_A          400 QATVLSQPVQTLDSLRAARHGALDADGVDFSE-------SVELPLMEVRALLDLGDVAKATRKLDDLAER----VGWRW-  467 (681)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTC-------CCTT-------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----HCCCH-
T ss_pred             hcccccCHHHHHHHHHHhhhhccccccccccc-------chhHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CcchH-
Confidence            45677777777776652210 00000011122       2234455667776788888888888776543    22222 


Q ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-------------HHhhcCCCCCcchhh--------HHHHHHH
Q 016258          271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR-------------DAVKRHSNVPSQVLD--------VAVSLAK  329 (392)
Q Consensus       271 ~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~-------------~~~~~~~~~~~~~~d--------la~sl~~  329 (392)
                            ..+..+|.++...|++++|+..|++++++.-             ...++..+ . ..++        .+..+.+
T Consensus       468 ------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~-~~~~~al~~~P~~~~a~~~  539 (681)
T 2pzi_A          468 ------RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-H-KFYQTVWSTNDGVISAAFG  539 (681)
T ss_dssp             ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-T-CHHHHHHHHCTTCHHHHHH
T ss_pred             ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-H-HHHHHHHHhCCchHHHHHH
Confidence                  3677888899999999999999999887431             11122222 2 1222        1234567


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 016258          330 VADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFL  377 (392)
Q Consensus       330 la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l  377 (392)
                      +|.++..+|++++|+..|++++      ..+|+.+....+++.++...
T Consensus       540 lg~~~~~~g~~~~A~~~~~~al------~l~P~~~~a~~~~~~~~~~~  581 (681)
T 2pzi_A          540 LARARSAEGDRVGAVRTLDEVP------PTSRHFTTARLTSAVTLLSG  581 (681)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSC------TTSTTHHHHHHHHHHHTC--
T ss_pred             HHHHHHHcCCHHHHHHHHHhhc------ccCcccHHHHHHHHHHHHcc
Confidence            8888888888877777666554      44677776666777665433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.15  E-value=0.0027  Score=56.81  Aligned_cols=100  Identities=15%  Similarity=0.094  Sum_probs=78.4

Q ss_pred             HHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 016258          229 QLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD  308 (392)
Q Consensus       229 ~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~  308 (392)
                      .....+..++.++...|++..|+.+++.+...    .+...       .....+|.++...|++++|+..|++++++   
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~---  106 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALAI----RPDMP-------EVFNYLGIYLTQAGNFDAAYEAFDSVLEL---  106 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc----CCCcH-------HHHHHHHHHHHHccCHHHHHHHHHHHHhc---
Confidence            44567777888888899999999998877554    33332       35778899999999999999999999875   


Q ss_pred             HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       309 ~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                          .+..       ...+..+|.++..+|++++|+..|++++.+
T Consensus       107 ----~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  140 (275)
T 1xnf_A          107 ----DPTY-------NYAHLNRGIALYYGGRDKLAQDDLLAFYQD  140 (275)
T ss_dssp             ----CTTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ----Cccc-------cHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence                2221       346778999999999999999999888764

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.14  E-value=0.0069  Score=52.11  Aligned_cols=99  Identities=10%  Similarity=0.038  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcc-hh----h-HHHHHHHHHHHHHhcCCHHHHHH
Q 016258          272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQ-VL----D-VAVSLAKVADVDRSIGNEDVAVD  345 (392)
Q Consensus       272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~-~~----d-la~sl~~la~~~~~~g~~~~A~~  345 (392)
                      .......+..+|..+...|++++|+..|.+++++...    .+..... ..    . .+..+.++|.++..+|++++|+.
T Consensus        34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  109 (198)
T 2fbn_A           34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH----TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAID  109 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT----CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc----ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            4445567889999999999999999999999975322    1110000 00    0 13567889999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          346 GFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       346 ~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      .|++++.+      +|.+.....+++.++..+++.
T Consensus       110 ~~~~al~~------~p~~~~~~~~lg~~~~~~~~~  138 (198)
T 2fbn_A          110 HASKVLKI------DKNNVKALYKLGVANMYFGFL  138 (198)
T ss_dssp             HHHHHHHH------STTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHh------CcccHHHHHHHHHHHHHcccH
Confidence            99999876      677788888888888877653

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.14  E-value=0.0037  Score=55.90  Aligned_cols=111  Identities=14%  Similarity=0.072  Sum_probs=83.1

Q ss_pred             hhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhh
Q 016258          243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD  322 (392)
Q Consensus       243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~d  322 (392)
                      ..|++..|+.++++....    ....   .......+..+|.++...|++++|+..|++++++       .+.       
T Consensus        17 ~~~~~~~A~~~~~~~~~~----~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~~~-------   75 (275)
T 1xnf_A           17 PTLQQEVILARMEQILAS----RALT---DDERAQLLYERGVLYDSLGLRALARNDFSQALAI-------RPD-------   75 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTS----SCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CCC-------
T ss_pred             ccchHHHHHHHHHHHHhc----cccc---CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-------CCC-------
Confidence            446667788777665332    1111   2234567889999999999999999999999976       222       


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       323 la~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      ....+..+|.++..+|++++|+..|++++.+      +|.......+++.++..+|+.
T Consensus        76 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~  127 (275)
T 1xnf_A           76 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL------DPTYNYAHLNRGIALYYGGRD  127 (275)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCTHHHHHHHHHHHHTTCH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CccccHHHHHHHHHHHHhccH
Confidence            2456788999999999999999999998875      567777788888887776653

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.13  E-value=0.0052  Score=55.51  Aligned_cols=84  Identities=15%  Similarity=0.255  Sum_probs=45.2

Q ss_pred             HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhh----hcchhHHHhHHHHHHHHHHhCCCC
Q 016258          192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRA----MGDADAAVAYFADSVEFLMKLPMD  267 (392)
Q Consensus       192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~----~gdhh~a~~~~e~~~~~~~~L~~~  267 (392)
                      ..+..|++++|...|....+         +       .+...+..++.++..    .+++..|+.+++.+.+.    .  
T Consensus        15 ~~~~~~~~~~A~~~~~~a~~---------~-------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~--   72 (273)
T 1ouv_A           15 KSYKEKDFTQAKKYFEKACD---------L-------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----N--   72 (273)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH---------T-------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T--
T ss_pred             HHHhCCCHHHHHHHHHHHHH---------C-------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----C--
Confidence            55677888888887753321         1       111233445555544    56666666666655322    1  


Q ss_pred             ChhHHHHHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHH
Q 016258          268 DLEIIHTLSVSLNKIGDLKYY----GGDLQAARSYYVRSLN  304 (392)
Q Consensus       268 ~~e~~~~ls~~~~~lg~l~~~----~g~l~~A~~~ye~sL~  304 (392)
                      .       ..+...+|.++..    .+++++|+.+|+++++
T Consensus        73 ~-------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~  106 (273)
T 1ouv_A           73 Y-------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD  106 (273)
T ss_dssp             C-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             C-------HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH
Confidence            1       1244555555555    5666666666665554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.13  E-value=0.0013  Score=52.56  Aligned_cols=93  Identities=10%  Similarity=-0.034  Sum_probs=71.7

Q ss_pred             hhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCC
Q 016258          236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSN  315 (392)
Q Consensus       236 ~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~  315 (392)
                      ..+......|++..|+..++.+...    .+...       ..+..+|.++...|++++|+..|++++++       .+.
T Consensus        22 ~~g~~~~~~g~~~~A~~~~~~al~~----~P~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------~P~   83 (121)
T 1hxi_A           22 EEGLSMLKLANLAEAALAFEAVCQK----EPERE-------EAWRSLGLTQAENEKDGLAIIALNHARML-------DPK   83 (121)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH----STTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH----CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC
Confidence            4566666889999999888876543    33333       35778999999999999999999998875       232


Q ss_pred             CCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          316 VPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       316 ~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                      +       ...+..+|.++..+|++++|+..|++++.+
T Consensus        84 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           84 D-------IAVHAALAVSHTNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             C-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            2       346678999999999999999999888754

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.13  E-value=0.011  Score=53.16  Aligned_cols=163  Identities=12%  Similarity=0.038  Sum_probs=101.4

Q ss_pred             HHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhh--------hcchhHHHhHHHHHHHH
Q 016258          189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRA--------MGDADAAVAYFADSVEF  260 (392)
Q Consensus       189 ~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~--------~gdhh~a~~~~e~~~~~  260 (392)
                      .+...+..|++++|...+...       +...+.+.    .....+..++.+...        .|++..|+..++.....
T Consensus        58 lg~~~~~~~~~~~A~~~~~~~-------l~~~p~~~----~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  126 (261)
T 3qky_A           58 LARAYYQNKEYLLAASEYERF-------IQIYQIDP----RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR  126 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH-------HHHCTTCT----THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHHH-------HHHCCCCc----hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence            344667889999998877522       22222221    112345566776656        78888898888776433


Q ss_pred             HHhCCCCChh----------HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHH
Q 016258          261 LMKLPMDDLE----------IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKV  330 (392)
Q Consensus       261 ~~~L~~~~~e----------~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~l  330 (392)
                      .    +....          +...+....-.+|.++...|++++|+..|++.++..       +...    .....+.++
T Consensus       127 ~----p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------p~~~----~~~~a~~~l  191 (261)
T 3qky_A          127 Y----PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY-------PDTP----WADDALVGA  191 (261)
T ss_dssp             C----TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTST----THHHHHHHH
T ss_pred             C----cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-------CCCc----hHHHHHHHH
Confidence            2    22221          223334445788999999999999999999988642       2211    234566778


Q ss_pred             HHHHHhc----------CCHHHHHHHHHHHHHHHHHhhcCCCc---hHHHHHHHHHHHHHHHHhhc
Q 016258          331 ADVDRSI----------GNEDVAVDGFQEAIKRLESLTLKPEE---AGLEQRRLSVLEFLNNQLSE  383 (392)
Q Consensus       331 a~~~~~~----------g~~~~A~~~~~eal~i~e~l~~~p~~---a~~l~~~~~~~~~l~~~~~~  383 (392)
                      |.++..+          |++++|+..|++++      ..+|+.   ......++.++..+++.-.+
T Consensus       192 ~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~------~~~p~~~~~~~a~~~l~~~~~~~~~~~~~  251 (261)
T 3qky_A          192 MRAYIAYAEQSVRARQPERYRRAVELYERLL------QIFPDSPLLRTAEELYTRARQRLTELEGD  251 (261)
T ss_dssp             HHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH------HHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhcccchhhcccchHHHHHHHHHHHH------HHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence            8888776          56666666655544      334544   44566777777777776443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.12  E-value=0.0047  Score=50.60  Aligned_cols=87  Identities=13%  Similarity=0.049  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       274 ~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                      .....+..+|.++...|++++|+..|++++++.       +.       ....+.++|.++..+|++++|+..|++++.+
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~   76 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN-------PS-------NAIYYGNRSLAYLRTECYGYALGDATRAIEL   76 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345678899999999999999999999998751       22       1456788999999999999999999988875


Q ss_pred             HHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          354 LESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       354 ~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                            +|.......+++.++..+|+.
T Consensus        77 ------~~~~~~~~~~~a~~~~~~~~~   97 (166)
T 1a17_A           77 ------DKKYIKGYYRRAASNMALGKF   97 (166)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCH
T ss_pred             ------CcccHHHHHHHHHHHHHhccH
Confidence                  566677777788877766653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.12  E-value=0.002  Score=63.38  Aligned_cols=122  Identities=11%  Similarity=-0.023  Sum_probs=79.3

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  312 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~  312 (392)
                      .+..++.++...|++..|+.+++.....    .+...       ..+..+|.++...|++++|+..|++++++.......
T Consensus       340 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  408 (514)
T 2gw1_A          340 PYIQLACLAYRENKFDDCETLFSEAKRK----FPEAP-------EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI  408 (514)
T ss_dssp             HHHHHHHHTTTTTCHHHHHHHHHHHHHH----STTCS-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH----cccCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH
Confidence            4455666776778888888887776533    22222       356788999999999999999999998764321100


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          313 HSNVPSQVLDVAVSLAKVADVDRS---IGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       313 ~~~~~~~~~dla~sl~~la~~~~~---~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                              ...+..+..+|.++..   +|++++|+..|++++.+      +|........++.++..+|+
T Consensus       409 --------~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~  464 (514)
T 2gw1_A          409 --------YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL------DPRSEQAKIGLAQMKLQQED  464 (514)
T ss_dssp             --------SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTC
T ss_pred             --------HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHhcC
Confidence                    0112355667777777   77777777777776653      35555555566666655543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.11  E-value=0.0072  Score=46.88  Aligned_cols=87  Identities=22%  Similarity=0.210  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258          273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  352 (392)
Q Consensus       273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~  352 (392)
                      ......+..+|.++...|++++|+..|++++++       .+.       ....+..+|.++..+|++++|+..|++++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   74 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL-------NPA-------NAVYFCNRAAAYSKLGNYAGAVQDCERAIC   74 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-------CCC-------CHHHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence            344567788999999999999999999999875       222       145677899999999999999999998886


Q ss_pred             HHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          353 RLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       353 i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      +      .|.+.....+++.++..+++
T Consensus        75 ~------~~~~~~~~~~~~~~~~~~~~   95 (131)
T 2vyi_A           75 I------DPAYSKAYGRMGLALSSLNK   95 (131)
T ss_dssp             H------CTTCHHHHHHHHHHHHHTTC
T ss_pred             c------CccCHHHHHHHHHHHHHhCC
Confidence            4      56777777888888776664

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.05  E-value=0.012  Score=57.74  Aligned_cols=76  Identities=12%  Similarity=0.081  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHh---ccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          278 SLNKIGDLKYY---GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       278 ~~~~lg~l~~~---~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                      ..-.++.....   .|++++|+..|+++++..+......+.........+..+..+|.++...|++++|+..|++++.+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  266 (514)
T 2gw1_A          188 KELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL  266 (514)
T ss_dssp             HHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence            33444555554   78999999999999997766665555543333466778889999999999999999999888753

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.04  E-value=0.0046  Score=55.90  Aligned_cols=93  Identities=19%  Similarity=0.245  Sum_probs=65.2

Q ss_pred             HHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHH
Q 016258          231 GAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYY----GGDLQAARSYYVRSLNVR  306 (392)
Q Consensus       231 ~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~----~g~l~~A~~~ye~sL~i~  306 (392)
                      ...+..++..+...|++..|+.+++.+.+      ....       .+...+|.++..    .+++++|+.+|+++++.-
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~------~~~~-------~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~   72 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD------LKEN-------SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN   72 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------TTCH-------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH------CCCH-------HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC
Confidence            34566788888788999999999987755      1122       367889999999    999999999999998641


Q ss_pred             HHHhhcCCCCCcchhhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 016258          307 RDAVKRHSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQEAIK  352 (392)
Q Consensus       307 ~~~~~~~~~~~~~~~dla~sl~~la~~~~~----~g~~~~A~~~~~eal~  352 (392)
                                      ....+.++|.++..    .+++++|+.+|++++.
T Consensus        73 ----------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~  106 (273)
T 1ouv_A           73 ----------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD  106 (273)
T ss_dssp             ----------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             ----------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH
Confidence                            12344455555555    5566666555555544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.03  E-value=0.0044  Score=47.29  Aligned_cols=83  Identities=19%  Similarity=0.248  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258          277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  356 (392)
Q Consensus       277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~  356 (392)
                      ..+..+|.++...|++++|+..|++++..       .+.       ....+..+|.++..+|++++|+..|++++.+   
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---   67 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKL-------DPH-------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---   67 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHH-------CCC-------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---
Confidence            46778899999999999999999999864       222       1446778999999999999999999888765   


Q ss_pred             hhcCCCchHHHHHHHHHHHHHHH
Q 016258          357 LTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       357 l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                         +|.......+++.++..+|+
T Consensus        68 ---~~~~~~~~~~~a~~~~~~~~   87 (118)
T 1elw_A           68 ---KPDWGKGYSRKAAALEFLNR   87 (118)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTC
T ss_pred             ---CcccHHHHHHHHHHHHHHhh
Confidence               57777778888888877665

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.03  E-value=0.0027  Score=49.84  Aligned_cols=84  Identities=17%  Similarity=0.206  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258          276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  355 (392)
Q Consensus       276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e  355 (392)
                      ..++..+|.++...|++++|+..|++++++       .+.       ....+..+|.++..+|++++|+..|++++.+  
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--   79 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR-------NPK-------DAKLYSNRAACYTKLLEFQLALKDCEECIQL--   79 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-------CTT-------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCC-------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence            457888999999999999999999998854       222       1456788999999999999999999988874  


Q ss_pred             HhhcCCCchHHHHHHHHHHHHHHH
Q 016258          356 SLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       356 ~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                          .|.+.....+++.++..+++
T Consensus        80 ----~~~~~~~~~~la~~~~~~~~   99 (133)
T 2lni_A           80 ----EPTFIKGYTRKAAALEAMKD   99 (133)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTC
T ss_pred             ----CCCchHHHHHHHHHHHHHhh
Confidence                56777778888888877664

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.02  E-value=0.0035  Score=50.30  Aligned_cols=87  Identities=24%  Similarity=0.229  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258          277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  356 (392)
Q Consensus       277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~  356 (392)
                      ..+..++..+...|++++|+..|++++++       .+.    .......+.++|.++..+|++++|+..|++++.+   
T Consensus        29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---   94 (148)
T 2dba_A           29 EQLRKEGNELFKCGDYGGALAAYTQALGL-------DAT----PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---   94 (148)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHTS-------CCC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH-------ccc----chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---
Confidence            46778899999999999999999998853       121    1124567889999999999999999999988865   


Q ss_pred             hhcCCCchHHHHHHHHHHHHHHHH
Q 016258          357 LTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       357 l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                         +|.+.....+++.++..+++.
T Consensus        95 ---~~~~~~~~~~~a~~~~~~~~~  115 (148)
T 2dba_A           95 ---DGGDVKALYRRSQALEKLGRL  115 (148)
T ss_dssp             ---TSCCHHHHHHHHHHHHHHTCH
T ss_pred             ---CccCHHHHHHHHHHHHHcCCH
Confidence               577777888888888777653

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.00  E-value=0.0025  Score=63.30  Aligned_cols=103  Identities=12%  Similarity=0.031  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC-CcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258          272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV-PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA  350 (392)
Q Consensus       272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~-~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea  350 (392)
                      .......+.++|.++...|++++|+..|++++++.........+. .......+..+.++|.++..+|++++|+..|+++
T Consensus       264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  343 (457)
T 1kt0_A          264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA  343 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            445667889999999999999999999999998643211000000 0011123567889999999999999999999999


Q ss_pred             HHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          351 IKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       351 l~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      +.+      +|.++..+.+++.+|..+++.
T Consensus       344 l~~------~p~~~~a~~~~g~a~~~~g~~  367 (457)
T 1kt0_A          344 LGL------DSANEKGLYRRGEAQLLMNEF  367 (457)
T ss_dssp             HHH------STTCHHHHHHHHHHHHHTTCH
T ss_pred             Hhc------CCccHHHHHHHHHHHHHccCH
Confidence            875      577788888899888877653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=96.99  E-value=0.0015  Score=49.60  Aligned_cols=97  Identities=19%  Similarity=0.077  Sum_probs=72.8

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  312 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~  312 (392)
                      .+..++.+....|++..|+.+++.+...    .+...       .....+|.++...|++++|+..|++++++       
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------   69 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQL----DPEES-------KYWLMKGKALYNLERYEEAVDCYNYVINV-------   69 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHH----CCCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHh----CcCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence            4456677777889999999998877543    23222       35678899999999999999999998865       


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 016258          313 HSNVPSQVLDVAVSLAKVADVDRSI-GNEDVAVDGFQEAIK  352 (392)
Q Consensus       313 ~~~~~~~~~dla~sl~~la~~~~~~-g~~~~A~~~~~eal~  352 (392)
                      .+.     ......+.++|.++..+ |++++|+..|++++.
T Consensus        70 ~~~-----~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           70 IED-----EYNKDVWAAKADALRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             SCC-----TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred             Ccc-----cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence            121     00244678899999999 999999988877754

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=96.98  E-value=0.0025  Score=64.74  Aligned_cols=127  Identities=12%  Similarity=0.067  Sum_probs=94.9

Q ss_pred             HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258          190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL  269 (392)
Q Consensus       190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~  269 (392)
                      +...+..|++++|...+...       +...+       .+...+..++.++..+|++.+|+.+++++...    .+.. 
T Consensus        30 g~~~~~~g~~~~A~~~~~~a-------l~~~p-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~-   90 (568)
T 2vsy_A           30 ADAELGMGDTTAGEMAVQRG-------LALHP-------GHPEAVARLGRVRWTQQRHAEAAVLLQQASDA----APEH-   90 (568)
T ss_dssp             HHHHHHHTCHHHHHHHHHHH-------HTTST-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-
T ss_pred             HHHHHHcCCHHHHHHHHHHH-------HHhCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCC-
Confidence            44566788898888877522       22222       22345667888888899999999999887654    2323 


Q ss_pred             hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhc---CCHHHHHHH
Q 016258          270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSI---GNEDVAVDG  346 (392)
Q Consensus       270 e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~---g~~~~A~~~  346 (392)
                            ...+.++|.++...|++++|+..|++++++       .+.       ....+.+++.++..+   |++++|+..
T Consensus        91 ------~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~l~~~~~~~~~~g~~~~A~~~  150 (568)
T 2vsy_A           91 ------PGIALWLGHALEDAGQAEAAAAAYTRAHQL-------LPE-------EPYITAQLLNWRRRLCDWRALDVLSAQ  150 (568)
T ss_dssp             ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHHHHHHHHHhhccccHHHHHHH
Confidence                  236788999999999999999999999876       222       144677899999999   999999999


Q ss_pred             HHHHHHHHH
Q 016258          347 FQEAIKRLE  355 (392)
Q Consensus       347 ~~eal~i~e  355 (392)
                      |++++.+-.
T Consensus       151 ~~~al~~~p  159 (568)
T 2vsy_A          151 VRAAVAQGV  159 (568)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHhcCC
Confidence            999987643

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=96.97  E-value=0.0013  Score=68.94  Aligned_cols=162  Identities=16%  Similarity=0.058  Sum_probs=85.5

Q ss_pred             HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHH---------
Q 016258          192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLM---------  262 (392)
Q Consensus       192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~---------  262 (392)
                      ..+..|++++|...+..+.       ..       -|.+...+..+|.++..+|++.+|+..|+++.....         
T Consensus       442 ~~~~~g~~~~A~~~~~~al-------~~-------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l  507 (681)
T 2pzi_A          442 ALLDLGDVAKATRKLDDLA-------ER-------VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLAL  507 (681)
T ss_dssp             HHHHHTCHHHHHHHHHHHH-------HH-------HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHh-------cc-------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            3446677777766654221       11       122233455566666667777777776666532210         


Q ss_pred             --------hCCCCChhHHHHH------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHH
Q 016258          263 --------KLPMDDLEIIHTL------SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLA  328 (392)
Q Consensus       263 --------~L~~~~~e~~~~l------s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~  328 (392)
                              +... ...+.+.+      .....++|.++...|++++|+..|++++++       .+       +.+..+.
T Consensus       508 g~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------~P-------~~~~a~~  572 (681)
T 2pzi_A          508 AATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT-------SR-------HFTTARL  572 (681)
T ss_dssp             HHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT-------ST-------THHHHHH
T ss_pred             HHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc-------Cc-------ccHHHHH
Confidence                    1111 11122222      134566677777777777777666665532       22       3355677


Q ss_pred             HHHHHHHhcCCHHHH-HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHhhcC
Q 016258          329 KVADVDRSIGNEDVA-VDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQLSEK  384 (392)
Q Consensus       329 ~la~~~~~~g~~~~A-~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~~~~  384 (392)
                      +++.++...+...++ ...|++++..++  ...+.......-...++...-..+...
T Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~A~~~l~--~~~~~~~~~~~l~~~ll~~~l~~~~~~  627 (681)
T 2pzi_A          573 TSAVTLLSGRSTSEVTEEQIRDAARRVE--ALPPTEPRVLQIRALVLGGALDWLKDN  627 (681)
T ss_dssp             HHHHHTC-------CCHHHHHHHHHHHH--TSCTTSTTHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHccCCCCCCCHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHHHHHHHHcc
Confidence            788888776665555 566677765544  566666666666667776655555443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=96.96  E-value=0.0025  Score=58.78  Aligned_cols=81  Identities=16%  Similarity=0.134  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      .+..+|.++...|++++|+..|++++++       .+.       .+..+.++|.++..+|++++|+..|++++.     
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----   66 (281)
T 2c2l_A            6 ELKEQGNRLFVGRKYPEAAACYGRAITR-------NPL-------VAVYYTNRALCYLKMQQPEQALADCRRALE-----   66 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CSC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCc-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----
Confidence            4555666666666666666666666653       111       123444555555555555555555544443     


Q ss_pred             hcCCCchHHHHHHHHHHHHHH
Q 016258          358 TLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       358 ~~~p~~a~~l~~~~~~~~~l~  378 (392)
                       .+|++.....+++.++..+|
T Consensus        67 -~~p~~~~~~~~lg~~~~~~g   86 (281)
T 2c2l_A           67 -LDGQSVKAHFFLGQCQLEME   86 (281)
T ss_dssp             -SCTTCHHHHHHHHHHHHHTT
T ss_pred             -hCCCCHHHHHHHHHHHHHcC
Confidence             24444444555555544444

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.93  E-value=0.00079  Score=49.48  Aligned_cols=44  Identities=25%  Similarity=0.685  Sum_probs=37.5

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC------CCCCCCCCcc
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK------DCPLCGADIE  131 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~~  131 (392)
                      ..-.|.||..++........|+|.|=..||.+|+      .||+|+....
T Consensus        14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP   63 (74)
T ss_dssp             SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred             CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence            4578999999998667777999999999999994      4999998654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=96.89  E-value=0.01  Score=45.53  Aligned_cols=83  Identities=20%  Similarity=0.273  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258          277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  356 (392)
Q Consensus       277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~  356 (392)
                      ..+..++.++...|++++|+..|++++...       +.       ....+..++.++...|++++|+..|++++.+   
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---   72 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PN-------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---   72 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cC-------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---
Confidence            467788999999999999999999998651       21       1346778999999999999999999888764   


Q ss_pred             hhcCCCchHHHHHHHHHHHHHHH
Q 016258          357 LTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       357 l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                         .|.+......++.++..+++
T Consensus        73 ---~~~~~~~~~~la~~~~~~~~   92 (125)
T 1na0_A           73 ---DPNNAEAWYNLGNAYYKQGD   92 (125)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTC
T ss_pred             ---CCccHHHHHHHHHHHHHhcC
Confidence               46666667777777766554

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=96.84  E-value=0.023  Score=47.88  Aligned_cols=138  Identities=10%  Similarity=0.010  Sum_probs=74.4

Q ss_pred             HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHH---------
Q 016258          190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEF---------  260 (392)
Q Consensus       190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~---------  260 (392)
                      +...+..|++++|...+....              ..-|.+...+..++.+....|++.+|+.+++.....         
T Consensus        13 a~~~~~~g~~~~A~~~~~~al--------------~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~   78 (176)
T 2r5s_A           13 VSELLQQGEHAQALNVIQTLS--------------DELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSL   78 (176)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSC--------------HHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHH--------------HHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHH
Confidence            346678899999988775321              123344445556666665666666665544332100         


Q ss_pred             ------HHhCCCC--ChhHHHHH------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHH
Q 016258          261 ------LMKLPMD--DLEIIHTL------SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVS  326 (392)
Q Consensus       261 ------~~~L~~~--~~e~~~~l------s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~s  326 (392)
                            .......  ...++..+      ......+|.++...|++++|+..|++.+++       .+...     -...
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~p~~~-----~~~a  146 (176)
T 2r5s_A           79 IAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV-------NLGAQ-----DGEV  146 (176)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CTTTT-----TTHH
T ss_pred             HHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-------CcccC-----hHHH
Confidence                  0000000  00111111      234556677777777777777777766532       22110     1224


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          327 LAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       327 l~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                      +.+++.++..+|+.++|+..|++++..
T Consensus       147 ~~~l~~~~~~~g~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          147 KKTFMDILSALGQGNAIASKYRRQLYS  173 (176)
T ss_dssp             HHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence            556777777777777777777777654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=96.82  E-value=0.0025  Score=48.26  Aligned_cols=79  Identities=11%  Similarity=0.185  Sum_probs=62.4

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258          279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT  358 (392)
Q Consensus       279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~  358 (392)
                      ...+|.++...|++++|+..|++++++.       +.       ....+..+|.++..+|++++|+..|++++.+     
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----   69 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-------PE-------ESKYWLMKGKALYNLERYEEAVDCYNYVINV-----   69 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHC-------CC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Confidence            4567889999999999999999998752       22       1345778999999999999999999888754     


Q ss_pred             cCCC--chHHHHHHHHHHHHH
Q 016258          359 LKPE--EAGLEQRRLSVLEFL  377 (392)
Q Consensus       359 ~~p~--~a~~l~~~~~~~~~l  377 (392)
                       .|.  ......+++.++..+
T Consensus        70 -~~~~~~~~~~~~l~~~~~~~   89 (112)
T 2kck_A           70 -IEDEYNKDVWAAKADALRYI   89 (112)
T ss_dssp             -SCCTTCHHHHHHHHHHHTTC
T ss_pred             -CcccchHHHHHHHHHHHHHH
Confidence             466  677777777777665

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.77  E-value=0.002  Score=50.72  Aligned_cols=75  Identities=20%  Similarity=0.160  Sum_probs=56.6

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q 016258          289 GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQ  368 (392)
Q Consensus       289 ~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~  368 (392)
                      .|++++|+..|++++++.       ..    -.+....+.++|.++..+|++++|+..|++++.+      +|++.....
T Consensus         3 ~g~~~~A~~~~~~al~~~-------~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~   65 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASG-------LQ----GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ------FPNHQALRV   65 (117)
T ss_dssp             ----CCCHHHHHHHHSSC-------CC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcC-------CC----CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCchHHHH
Confidence            578888999999888641       00    1245667889999999999999999999988865      688888888


Q ss_pred             HHHHHHHHHHHH
Q 016258          369 RRLSVLEFLNNQ  380 (392)
Q Consensus       369 ~~~~~~~~l~~~  380 (392)
                      +++.++..+|+.
T Consensus        66 ~l~~~~~~~g~~   77 (117)
T 3k9i_A           66 FYAMVLYNLGRY   77 (117)
T ss_dssp             HHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCH
Confidence            899988887764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.74  E-value=0.0086  Score=44.99  Aligned_cols=81  Identities=20%  Similarity=0.285  Sum_probs=59.8

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc
Q 016258          281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAV-SLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTL  359 (392)
Q Consensus       281 ~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~-sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~  359 (392)
                      +.|..+...|++++|+..|++++++       .+.       -.. .+.++|.++..+|++++|+..|++++.+      
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~-------~p~-------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------   64 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQT-------EPV-------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL------   64 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH-------CSS-------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH-------CCC-------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence            4577788889999999999998865       232       134 6778999999999999999999998864      


Q ss_pred             CCCchHHH--HHHHHHHHHHHHHh
Q 016258          360 KPEEAGLE--QRRLSVLEFLNNQL  381 (392)
Q Consensus       360 ~p~~a~~l--~~~~~~~~~l~~~~  381 (392)
                      +|+.....  ..+..++....+.+
T Consensus        65 ~p~~~~~~~~~~~~~a~~~~~~~~   88 (99)
T 2kc7_A           65 NPDSPALQARKMVMDILNFYNKDM   88 (99)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHCCTT
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHh
Confidence            45555544  55566655554433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.70  E-value=0.015  Score=48.63  Aligned_cols=97  Identities=13%  Similarity=0.167  Sum_probs=74.4

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHH-HHhccCH--HHHHHHHHHHHHHHHH
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDL-KYYGGDL--QAARSYYVRSLNVRRD  308 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l-~~~~g~l--~~A~~~ye~sL~i~~~  308 (392)
                      ..+..++.++...|++..|+.+++.+....    +...       .....+|.+ +...|++  ++|+..|++++++   
T Consensus        45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~-------~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~---  110 (177)
T 2e2e_A           45 EQWALLGEYYLWQNDYSNSLLAYRQALQLR----GENA-------ELYAALATVLYYQASQHMTAQTRAMIDKALAL---  110 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----CSCH-------HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCH-------HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh---
Confidence            356677888878999999999998875543    2222       356778888 7788998  9999999998875   


Q ss_pred             HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       309 ~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                          .+.+       ...+..+|.++..+|++++|+..|++++.+
T Consensus       111 ----~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          111 ----DSNE-------ITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             ----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ----CCCc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence                2221       345678999999999999999998888754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.66  E-value=0.009  Score=55.11  Aligned_cols=138  Identities=12%  Similarity=0.098  Sum_probs=85.6

Q ss_pred             HHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHH-----------
Q 016258          191 MRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVE-----------  259 (392)
Q Consensus       191 ~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~-----------  259 (392)
                      ..+++.|++++|...+..       .+...+.+       ...+..++.+....|++.+|+.+++....           
T Consensus       125 ~~~~~~g~~~~A~~~~~~-------al~~~P~~-------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~  190 (287)
T 3qou_A          125 MQLMQESNYTDALPLLXD-------AWQLSNQN-------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV  190 (287)
T ss_dssp             HHHHHTTCHHHHHHHHHH-------HHHHTTSC-------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHH-------HHHhCCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence            366778888888877652       22333333       33445556666566666666555443210           


Q ss_pred             ----HHHhCCC--CChhHHHHH------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHH
Q 016258          260 ----FLMKLPM--DDLEIIHTL------SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSL  327 (392)
Q Consensus       260 ----~~~~L~~--~~~e~~~~l------s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl  327 (392)
                          ....-..  ....+++.+      .....+++.++...|++++|+..|++.++..       +..     +-....
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-------p~~-----~~~~a~  258 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD-------LTA-----ADGQTR  258 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTG-----GGGHHH
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-------ccc-----ccchHH
Confidence                0000000  001111111      2456788999999999999999999988752       211     113456


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258          328 AKVADVDRSIGNEDVAVDGFQEAIKRL  354 (392)
Q Consensus       328 ~~la~~~~~~g~~~~A~~~~~eal~i~  354 (392)
                      .+++.++..+|+.++|+..|++++..+
T Consensus       259 ~~l~~~~~~~g~~~~a~~~~r~al~~~  285 (287)
T 3qou_A          259 XTFQEILAALGTGDALASXYRRQLYAL  285 (287)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHHh
Confidence            789999999999999999999998764

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=96.64  E-value=0.018  Score=45.08  Aligned_cols=85  Identities=14%  Similarity=0.044  Sum_probs=63.5

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258          279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT  358 (392)
Q Consensus       279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~  358 (392)
                      +-.+|..+...|++++|+..|++.++.       .+.+.    .....+-++|.++..+|++++|+..|++++.+     
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~p~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----   68 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLEL-------YPNGV----YTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----   68 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-------CSSST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH-------CCCCc----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----
Confidence            456788888999999999999988754       22221    22356778999999999999999999888763     


Q ss_pred             cCCCc---hHHHHHHHHHHHHHHHH
Q 016258          359 LKPEE---AGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       359 ~~p~~---a~~l~~~~~~~~~l~~~  380 (392)
                       .|+.   .....+++.++..+|+.
T Consensus        69 -~p~~~~~~~~~~~la~~~~~~g~~   92 (129)
T 2xev_A           69 -YPTHDKAAGGLLKLGLSQYGEGKN   92 (129)
T ss_dssp             -CTTSTTHHHHHHHHHHHHHHTTCH
T ss_pred             -CCCCcccHHHHHHHHHHHHHcCCH
Confidence             3444   66677788887776653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.56  E-value=0.0073  Score=57.36  Aligned_cols=101  Identities=12%  Similarity=0.019  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhh--cCCCCCcchhh-HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258          274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK--RHSNVPSQVLD-VAVSLAKVADVDRSIGNEDVAVDGFQEA  350 (392)
Q Consensus       274 ~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~--~~~~~~~~~~d-la~sl~~la~~~~~~g~~~~A~~~~~ea  350 (392)
                      .....+..+|..+...|++++|+..|++++++......  ........... ....+.++|.++..+|++++|+..|+++
T Consensus       177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a  256 (338)
T 2if4_A          177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV  256 (338)
T ss_dssp             HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34556888999999999999999999999986432210  00000000000 1135778999999999999999999998


Q ss_pred             HHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          351 IKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       351 l~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      +.+      +|.+...+.+++.+|..+++.
T Consensus       257 l~~------~p~~~~a~~~lg~a~~~~g~~  280 (338)
T 2if4_A          257 LTE------EEKNPKALFRRGKAKAELGQM  280 (338)
T ss_dssp             HHH------CTTCHHHHHHHHHHHHTTTCH
T ss_pred             HHh------CCCCHHHHHHHHHHHHHcCCH
Confidence            864      678888888899888877653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=96.45  E-value=0.072  Score=46.69  Aligned_cols=162  Identities=13%  Similarity=-0.034  Sum_probs=95.5

Q ss_pred             HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258          190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL  269 (392)
Q Consensus       190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~  269 (392)
                      +...+..|++++|...|...       +...+.+.    .....+.+++.+.+..|++..|+..++.....    .+...
T Consensus        11 a~~~~~~g~~~~A~~~~~~~-------~~~~p~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~----~P~~~   75 (225)
T 2yhc_A           11 AQQKLQDGNWRQAITQLEAL-------DNRYPFGP----YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL----NPTHP   75 (225)
T ss_dssp             HHHHHHHTCHHHHHHHHHHH-------HHHCTTST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCT
T ss_pred             HHHHHHcCCHHHHHHHHHHH-------HHhCCCCh----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----CcCCC
Confidence            44678899999999888622       12222111    11235667888888899999999888776533    33333


Q ss_pred             hHHHHHHHHHHHHHHHHH------------------hccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchh----------
Q 016258          270 EIIHTLSVSLNKIGDLKY------------------YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL----------  321 (392)
Q Consensus       270 e~~~~ls~~~~~lg~l~~------------------~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~----------  321 (392)
                      .+    ..++-.+|.++.                  ..|++++|+..|++.++       ..+.......          
T Consensus        76 ~~----~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-------~~P~~~~a~~a~~~l~~~~~  144 (225)
T 2yhc_A           76 NI----DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR-------GYPNSQYTTDATKRLVFLKD  144 (225)
T ss_dssp             TH----HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT-------TCTTCTTHHHHHHHHHHHHH
T ss_pred             cH----HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH-------HCcCChhHHHHHHHHHHHHH
Confidence            21    123334444443                  34566677766666554       4444332110          


Q ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      .++...-.+|.++..+|++++|+..|++++++.-   ..|.....+.+++.++..+|+.
T Consensus       145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~a~~~l~~~~~~~g~~  200 (225)
T 2yhc_A          145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP---DTQATRDALPLMENAYRQMQMN  200 (225)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST---TSHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc---CCCccHHHHHHHHHHHHHcCCc
Confidence            1111223578889999999999998888775421   1122234567778887777654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=96.45  E-value=0.02  Score=48.27  Aligned_cols=127  Identities=10%  Similarity=0.044  Sum_probs=79.4

Q ss_pred             hhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH---------H
Q 016258          237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR---------R  307 (392)
Q Consensus       237 ~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~---------~  307 (392)
                      .+......|++..|+.+++......           ..-......+|.++...|++++|+..|++++...         -
T Consensus        12 ~a~~~~~~g~~~~A~~~~~~al~~~-----------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~   80 (176)
T 2r5s_A           12 QVSELLQQGEHAQALNVIQTLSDEL-----------QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIA   80 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSCHHH-----------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-----------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHH
Confidence            4455557788888887776553321           1123467788889999999999998887754321         0


Q ss_pred             --HHhhcCCCC-Ccchh--------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCC--chHHHHHHHHHH
Q 016258          308 --DAVKRHSNV-PSQVL--------DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPE--EAGLEQRRLSVL  374 (392)
Q Consensus       308 --~~~~~~~~~-~~~~~--------dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~--~a~~l~~~~~~~  374 (392)
                        ......... ....+        +-...+.++|.++..+|++++|+..|++++.      .+|+  +.....+++.++
T Consensus        81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~a~~~l~~~~  154 (176)
T 2r5s_A           81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK------VNLGAQDGEVKKTFMDIL  154 (176)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------TCTTTTTTHHHHHHHHHH
T ss_pred             HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH------hCcccChHHHHHHHHHHH
Confidence              000100000 00001        1234566799999999999999998887754      3444  345677888888


Q ss_pred             HHHHHH
Q 016258          375 EFLNNQ  380 (392)
Q Consensus       375 ~~l~~~  380 (392)
                      ..+|+.
T Consensus       155 ~~~g~~  160 (176)
T 2r5s_A          155 SALGQG  160 (176)
T ss_dssp             HHHCSS
T ss_pred             HHhCCC
Confidence            877653

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=96.32  E-value=0.0021  Score=64.35  Aligned_cols=83  Identities=13%  Similarity=0.066  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      .+.++|.++...|++++|+..|++++++       .+.       .+..+.++|.++..+|++++|+..|++++++    
T Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~-------~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----   69 (477)
T 1wao_1            8 ELKTQANDYFKAKDYENAIKFYSQAIEL-------NPS-------NAIYYGNRSLAYLRTECYGYALGDATRAIEL----   69 (477)
T ss_dssp             TSSSSSSSTTTTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS----
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHh-------CCc-------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----
Confidence            3455677778889999999999999976       222       2667889999999999999999999998865    


Q ss_pred             hcCCCchHHHHHHHHHHHHHHHH
Q 016258          358 TLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       358 ~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                        +|..+....+++.+|..+|+.
T Consensus        70 --~p~~~~~~~~lg~~~~~~g~~   90 (477)
T 1wao_1           70 --DKKYIKGYYRRAASNMALGKF   90 (477)
T ss_dssp             --CTTCHHHHHHHHHHHHHHTCH
T ss_pred             --CCCCHHHHHHHHHHHHHcCCH
Confidence              788888889999998887754

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.32  E-value=0.023  Score=47.51  Aligned_cols=106  Identities=14%  Similarity=0.102  Sum_probs=74.5

Q ss_pred             hhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhh
Q 016258          243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLD  322 (392)
Q Consensus       243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~d  322 (392)
                      ..|++..|+.+++.+...    .+...       ..+..+|.++...|++++|+..|++++++.       +.+      
T Consensus        22 ~~~~~~~A~~~~~~al~~----~p~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~------   77 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRA----NPQNS-------EQWALLGEYYLWQNDYSNSLLAYRQALQLR-------GEN------   77 (177)
T ss_dssp             -----CCCCHHHHHHHHH----CCSCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------CSC------
T ss_pred             hccCHHHHHHHHHHHHHh----CCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCC------
Confidence            345566666666655332    23232       367789999999999999999999999763       221      


Q ss_pred             HHHHHHHHHHH-HHhcCCH--HHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          323 VAVSLAKVADV-DRSIGNE--DVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       323 la~sl~~la~~-~~~~g~~--~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                       ...+..+|.+ +...|++  ++|+..|++++.+      +|.+.....+++.++..+|+
T Consensus        78 -~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~  130 (177)
T 2e2e_A           78 -AELYAALATVLYYQASQHMTAQTRAMIDKALAL------DSNEITALMLLASDAFMQAN  130 (177)
T ss_dssp             -HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTC
T ss_pred             -HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHccc
Confidence             3456778888 8888998  9999988888764      67777778888888776654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=96.25  E-value=0.035  Score=51.33  Aligned_cols=114  Identities=14%  Similarity=0.011  Sum_probs=76.8

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  312 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~  312 (392)
                      .+..++.+....|++.+|+..++.         +...       .....++.++..+|++++|+..|++++++.      
T Consensus       103 ~~~~la~~~~~~g~~~~Al~~l~~---------~~~~-------~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~------  160 (291)
T 3mkr_A          103 FLLMAASIYFYDQNPDAALRTLHQ---------GDSL-------ECMAMTVQILLKLDRLDLARKELKKMQDQD------  160 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTT---------CCSH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHhC---------CCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC------
Confidence            455666776677888888877654         2232       256678889999999999999999988652      


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                       ++..  ...++..+   ..++...|++++|+..|++++..      +|+++.++.+++.++..+|+.
T Consensus       161 -p~~~--~~~l~~a~---~~l~~~~~~~~eA~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~  216 (291)
T 3mkr_A          161 -EDAT--LTQLATAW---VSLAAGGEKLQDAYYIFQEMADK------CSPTLLLLNGQAACHMAQGRW  216 (291)
T ss_dssp             -TTCH--HHHHHHHH---HHHHHCTTHHHHHHHHHHHHHHH------SCCCHHHHHHHHHHHHHTTCH
T ss_pred             -cCcH--HHHHHHHH---HHHHhCchHHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCH
Confidence             2211  11111111   12333457888888887777653      788889999999988877754

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=96.14  E-value=0.045  Score=47.82  Aligned_cols=136  Identities=10%  Similarity=-0.023  Sum_probs=89.1

Q ss_pred             HHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhc----chhHHHhHHHHHHHHHHhCCCC
Q 016258          192 RAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMG----DADAAVAYFADSVEFLMKLPMD  267 (392)
Q Consensus       192 ~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~g----dhh~a~~~~e~~~~~~~~L~~~  267 (392)
                      ..+..+++++|...|....+         .       .+...+..++.++.. +    ++.+++.+++.+.+.      .
T Consensus        27 ~~~~~~~~~~A~~~~~~a~~---------~-------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~------g   83 (212)
T 3rjv_A           27 TWVSSGDYQKAEYWAQKAAA---------Q-------GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA------G   83 (212)
T ss_dssp             HHHHHTCHHHHHHHHHHHHH---------T-------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT------T
T ss_pred             HHhcCCCHHHHHHHHHHHHH---------c-------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC------C
Confidence            34456777777777753311         0       122344556666644 5    678888888877321      1


Q ss_pred             ChhHHHHHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHh----cCC
Q 016258          268 DLEIIHTLSVSLNKIGDLKYY----GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS----IGN  339 (392)
Q Consensus       268 ~~e~~~~ls~~~~~lg~l~~~----~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~----~g~  339 (392)
                      .       ..+..+||.++..    .+++++|+.+|+++++.       .+.     .+.+.++.+||.++..    .++
T Consensus        84 ~-------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-------~~~-----~~~~~a~~~Lg~~y~~g~g~~~d  144 (212)
T 3rjv_A           84 S-------KSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-------SES-----DAAVDAQMLLGLIYASGVHGPED  144 (212)
T ss_dssp             C-------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-------TTS-----HHHHHHHHHHHHHHHHTSSSSCC
T ss_pred             C-------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-------CCC-----cchHHHHHHHHHHHHcCCCCCCC
Confidence            1       2467889999877    78999999999988753       110     0246678899999998    889


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 016258          340 EDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEF  376 (392)
Q Consensus       340 ~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~  376 (392)
                      +++|+.+|+++.++       +.+.....+++.+|..
T Consensus       145 ~~~A~~~~~~A~~~-------~~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A          145 DVKASEYFKGSSSL-------SRTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             HHHHHHHHHHHHHT-------SCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHc
Confidence            99999999999754       2223345556665543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=96.08  E-value=0.045  Score=48.04  Aligned_cols=64  Identities=9%  Similarity=-0.061  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                      ...-.+|.++...|++.+|+..|++.++..       +...    .....+..+|.++..+|++++|+..|+..+
T Consensus       148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~----~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~  211 (225)
T 2yhc_A          148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-------PDTQ----ATRDALPLMENAYRQMQMNAQAEKVAKIIA  211 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTSH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-------cCCC----ccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            344567888899999999999999888652       2211    234567889999999999999998776443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=95.98  E-value=0.22  Score=41.92  Aligned_cols=96  Identities=13%  Similarity=0.109  Sum_probs=55.7

Q ss_pred             hCCCCChhHHHHHHHHHHHHHHHHHhccCHH---HHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcC-
Q 016258          263 KLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQ---AARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIG-  338 (392)
Q Consensus       263 ~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~---~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g-  338 (392)
                      ++.+...+       .+.++|.++...++++   +|+..|++++...+++++-.+..       +..+.++|.+|..+| 
T Consensus        30 ~l~P~~ae-------a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~-------~~A~~~LG~ay~~lg~   95 (158)
T 1zu2_A           30 KSNPLDAD-------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-------DEAVWCIGNAYTSFAF   95 (158)
T ss_dssp             HHCTTCHH-------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHH
T ss_pred             HHCCCCHH-------HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc-------HHHHHHHHHHHHHhcc
Confidence            44555554       5666777776665443   45556666666666666656653       456777888887765 


Q ss_pred             ---CHHHHHHHHHHHHHHHHHh-hcCCCchHHHHHHHH
Q 016258          339 ---NEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRRLS  372 (392)
Q Consensus       339 ---~~~~A~~~~~eal~i~e~l-~~~p~~a~~l~~~~~  372 (392)
                         ++..|...|++|+..+++. +.+|++..+.+.+..
T Consensus        96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~  133 (158)
T 1zu2_A           96 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM  133 (158)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence               2334444444444444443 457777776665543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=95.83  E-value=0.012  Score=44.76  Aligned_cols=97  Identities=11%  Similarity=0.022  Sum_probs=68.6

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhh
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK  311 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~  311 (392)
                      ..+..++..++..|++..|+..++.+...    .+...       ....++|.++...|++++|+..|++++++      
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~------   67 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITA----QPQNP-------VGYSNKAMALIKLGEYTQAIQMCQQGLRY------   67 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTS------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence            34556778887899999999999887654    33332       35789999999999999999999998854      


Q ss_pred             cCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHH
Q 016258          312 RHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGF  347 (392)
Q Consensus       312 ~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~  347 (392)
                       .+.+... ......+..++.++..+|+++.|+..|
T Consensus        68 -~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~  101 (111)
T 2l6j_A           68 -TSTAEHV-AIRSKLQYRLELAQGAVGSVQIPVVEV  101 (111)
T ss_dssp             -CSSTTSH-HHHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred             -CCCccHH-HHHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence             2322111 113556677888888888776665443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=95.62  E-value=0.061  Score=45.43  Aligned_cols=76  Identities=14%  Similarity=0.043  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHh-hcCCCchHHHHHHHH
Q 016258          297 SYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNE---DVAVDGFQEAIKRLESL-TLKPEEAGLEQRRLS  372 (392)
Q Consensus       297 ~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~---~~A~~~~~eal~i~e~l-~~~p~~a~~l~~~~~  372 (392)
                      ..|+++++..+.+.+..+.+       +..+.++|.++..++++   ..|+..+++|+..+++. ..+|+.+....+++.
T Consensus        16 ~~feeA~~~~~~Ai~l~P~~-------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~   88 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPLD-------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN   88 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            34555555555555666654       45667777777776655   46777888888888887 889999999999999


Q ss_pred             HHHHHHH
Q 016258          373 VLEFLNN  379 (392)
Q Consensus       373 ~~~~l~~  379 (392)
                      +|..+|.
T Consensus        89 ay~~lg~   95 (158)
T 1zu2_A           89 AYTSFAF   95 (158)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcc
Confidence            9998874

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=95.56  E-value=0.06  Score=49.94  Aligned_cols=128  Identities=15%  Similarity=-0.073  Sum_probs=87.4

Q ss_pred             HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258          190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL  269 (392)
Q Consensus       190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~  269 (392)
                      +...+..|++++|...|.....              .-|.+- .....+.+++..+++..++.+++..      +.-..+
T Consensus       109 A~~L~~~g~y~eA~~~l~~~~~--------------~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a------~~~~d~  167 (282)
T 4f3v_A          109 AACEAAQGNYADAMEALEAAPV--------------AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSA------GKWPDK  167 (282)
T ss_dssp             HHHHHHHTCHHHHHHHHTSSCC--------------TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTG------GGCSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHh--------------cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHh------hccCCc
Confidence            3356678999999998853211              112222 4455667888889999998888532      111111


Q ss_pred             hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcC-CCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016258          270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH-SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQ  348 (392)
Q Consensus       270 e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~-~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~  348 (392)
                      .   .-....-.+|.+...+|++++|+..|++++.      ... +.      .....+-++|.++..+|+.++|...|+
T Consensus       168 ~---~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~------~~~da~~~~glaL~~lGr~deA~~~l~  232 (282)
T 4f3v_A          168 F---LAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEA------CARAIAWYLAMARRSQGNESAAVALLE  232 (282)
T ss_dssp             H---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTT------THHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             c---cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCcc------ccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            1   1234678899999999999999999998762      111 21      134466789999999999999999888


Q ss_pred             HHHHH
Q 016258          349 EAIKR  353 (392)
Q Consensus       349 eal~i  353 (392)
                      +++.+
T Consensus       233 ~a~a~  237 (282)
T 4f3v_A          233 WLQTT  237 (282)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            87753

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=95.47  E-value=0.0048  Score=47.97  Aligned_cols=31  Identities=19%  Similarity=0.538  Sum_probs=26.3

Q ss_pred             CCeeccccccc-cccCcee--ccCCCcchHHhHHh
Q 016258           88 GPLSCMICQAL-LFECSKC--TPCSHVYCKACISR  119 (392)
Q Consensus        88 ~~~~C~iC~~~-~~~~p~~--~~C~h~fC~~Ci~~  119 (392)
                      +++.|+||.+. +. +++.  +.|+|+||..|+..
T Consensus         2 ee~~C~~C~~~~~~-~av~~C~~C~~~~C~~Cl~~   35 (101)
T 2jun_A            2 EKVLCQFCDQDPAQ-DAVKTCVTCEVSYCDECLKA   35 (101)
T ss_dssp             CCCBCTTCCSSSCC-BCCEEETTTTEEECHHHHHH
T ss_pred             CCCCCcCCCCCCCC-CceEECCcCChHHhHHHCHH
Confidence            46899999964 45 6666  99999999999997

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=95.17  E-value=0.0051  Score=58.09  Aligned_cols=45  Identities=24%  Similarity=0.649  Sum_probs=35.1

Q ss_pred             CCeeccccccccccCcee-------ccCCCcchHHhHHhcC---------------CCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECSKC-------TPCSHVYCKACISRFK---------------DCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~-------~~C~h~fC~~Ci~~~~---------------~CP~C~~~~~~  132 (392)
                      +...|+||..++.+...+       ..|+|.|-..||.+|.               .||.|+.++..
T Consensus       307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            457899999997742222       3799999999999983               39999997654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=94.96  E-value=0.066  Score=46.70  Aligned_cols=91  Identities=19%  Similarity=0.142  Sum_probs=70.5

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHHHH
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGG----DLQAARSYYVRSLNVRR  307 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g----~l~~A~~~ye~sL~i~~  307 (392)
                      ..+..++.++...+++..|+.+++.+.+.    .  +       ..+..+||.++.. +    ++++|+.+|+++++.  
T Consensus        19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g--~-------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--   82 (212)
T 3rjv_A           19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQ----G--D-------GDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--   82 (212)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHT----T--C-------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHc----C--C-------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--
Confidence            45566777777788999999999887432    1  2       2467889999887 6    899999999998642  


Q ss_pred             HHhhcCCCCCcchhhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 016258          308 DAVKRHSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQEAIK  352 (392)
Q Consensus       308 ~~~~~~~~~~~~~~dla~sl~~la~~~~~----~g~~~~A~~~~~eal~  352 (392)
                                    ..+.++.+||.++..    .+++++|+.+|+++.+
T Consensus        83 --------------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  117 (212)
T 3rjv_A           83 --------------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR  117 (212)
T ss_dssp             --------------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred             --------------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence                          225577889999987    8999999999988875

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=94.87  E-value=0.02  Score=40.11  Aligned_cols=43  Identities=23%  Similarity=0.599  Sum_probs=33.9

Q ss_pred             CCeeccccccccccCceeccCCC-----cchHHhHHhc------CCCCCCCCCcc
Q 016258           88 GPLSCMICQALLFECSKCTPCSH-----VYCKACISRF------KDCPLCGADIE  131 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h-----~fC~~Ci~~~------~~CP~C~~~~~  131 (392)
                      +...|.||+.... ++.++||.+     .|=..|+.+|      ..||+|+..+.
T Consensus         5 ~~~~CrIC~~~~~-~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECS-CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCCC-CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            4578999998854 677899653     6778899999      35999998764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=94.86  E-value=0.065  Score=40.60  Aligned_cols=66  Identities=21%  Similarity=0.173  Sum_probs=52.7

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD  308 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~  308 (392)
                      ..+..++.++...|++..|+.+++.+...    .+...       .....+|.++...|++++|+..|++++++...
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVET----DPDYV-------GTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCT-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            45667788888899999999999887644    23332       26788999999999999999999999987544

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=94.71  E-value=0.23  Score=35.66  Aligned_cols=82  Identities=23%  Similarity=0.431  Sum_probs=58.8

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhh
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVK  311 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~  311 (392)
                      ..+..++..+...|++..|+.+++.+...    .+...       .....+|.++...|++++|+..|++++++      
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------   72 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNA-------EAWYNLGNAYYKQGDYDEAIEYYQKALEL------   72 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCCH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence            45566777877889999999999887543    22222       35778999999999999999999999875      


Q ss_pred             cCCCCCcchhhHHHHHHHHHHHHHhcC
Q 016258          312 RHSNVPSQVLDVAVSLAKVADVDRSIG  338 (392)
Q Consensus       312 ~~~~~~~~~~dla~sl~~la~~~~~~g  338 (392)
                       .+.+       ...+.+++.++..+|
T Consensus        73 -~p~~-------~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 -DPNN-------AEAKQNLGNAKQKQG   91 (91)
T ss_dssp             -CTTC-------HHHHHHHHHHHHHHC
T ss_pred             -CCCC-------HHHHHHHHHHHHhcC
Confidence             2222       334556676665543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=94.49  E-value=1.2  Score=40.66  Aligned_cols=110  Identities=6%  Similarity=0.074  Sum_probs=58.8

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH------
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR------  306 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~------  306 (392)
                      .+..++......|++..|..+|+.+..    +.+...+      ....+++.+....|++++|+..|+++++..      
T Consensus       101 ~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  170 (308)
T 2ond_A          101 LYFAYADYEESRMKYEKVHSIYNRLLA----IEDIDPT------LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV  170 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHT----SSSSCTH------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHh----ccccCcc------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH
Confidence            334455555456666777766665532    2332221      134555556656666666666666655420      


Q ss_pred             ---HHHhh----cCCCCCcchh--------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258          307 ---RDAVK----RHSNVPSQVL--------DVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  352 (392)
Q Consensus       307 ---~~~~~----~~~~~~~~~~--------dla~sl~~la~~~~~~g~~~~A~~~~~eal~  352 (392)
                         .....    ...+.....+        +....+.+++.++..+|+++.|...|++++.
T Consensus       171 ~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  231 (308)
T 2ond_A          171 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence               00000    0000000001        1133456788889999999999999998876

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=94.36  E-value=0.14  Score=39.36  Aligned_cols=51  Identities=10%  Similarity=-0.031  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          324 AVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       324 a~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      ...+.++|.++..+|++++|+..|++++.+      +|.......+++.++..+|+.
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~   69 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDF------DPTYSVAWKWLGKTLQGQGDR   69 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHcCCH
Confidence            456778999999999999999999998864      577777788888888777654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=94.04  E-value=0.54  Score=46.20  Aligned_cols=26  Identities=8%  Similarity=0.151  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 016258          326 SLAKVADVDRS----IGNEDVAVDGFQEAI  351 (392)
Q Consensus       326 sl~~la~~~~~----~g~~~~A~~~~~eal  351 (392)
                      ...+||.++..    .+++++|+.+|+++.
T Consensus       185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~  214 (490)
T 2xm6_A          185 SCNQLGYMYSRGLGVERNDAISAQWYRKSA  214 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence            44455555555    555555555555554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.72  E-value=0.46  Score=53.29  Aligned_cols=98  Identities=15%  Similarity=0.086  Sum_probs=65.7

Q ss_pred             hhhhhhhcchhHHHhHHHHHHHHH---HhCCCCChhHHHHH--------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 016258          238 GDCCRAMGDADAAVAYFADSVEFL---MKLPMDDLEIIHTL--------SVSLNKIGDLKYYGGDLQAARSYYVRSLNVR  306 (392)
Q Consensus       238 c~~C~~~gdhh~a~~~~e~~~~~~---~~L~~~~~e~~~~l--------s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~  306 (392)
                      +.+|..+|.+.+|..+|+......   ..+-.....+.+.+        ...+.++|..+...|++++|+..|.++    
T Consensus      1056 A~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA---- 1131 (1630)
T 1xi4_A         1056 ANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA---- 1131 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc----
Confidence            457777788888888887762111   11111111122222        345678888999999999999999664    


Q ss_pred             HHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258          307 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  354 (392)
Q Consensus       307 ~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~  354 (392)
                              +       -...+..++..+..+|++++|+.+|+.|.+..
T Consensus      1132 --------d-------D~say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A         1132 --------D-------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred             --------C-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence                    1       13456668899999999999999998877544

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=93.22  E-value=0.37  Score=38.89  Aligned_cols=88  Identities=18%  Similarity=0.240  Sum_probs=65.9

Q ss_pred             hhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHHhhc
Q 016258          237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYY----GGDLQAARSYYVRSLNVRRDAVKR  312 (392)
Q Consensus       237 ~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~----~g~l~~A~~~ye~sL~i~~~~~~~  312 (392)
                      ++.++...+....++.+++.+.+.    +  +       ..+..+||.++..    .+++++|+.+|+++.+.       
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~----g--~-------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-------   90 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL----N--S-------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-------   90 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT----T--C-------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC----C--C-------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-------
Confidence            566553333446677777766432    1  1       2467899999988    78999999999999743       


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Q 016258          313 HSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       313 ~~~~~~~~~dla~sl~~la~~~~~----~g~~~~A~~~~~eal~i  353 (392)
                               ....+..+||.+|..    .+++++|+.+|+++.+.
T Consensus        91 ---------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           91 ---------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             ---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             ---------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence                     125567899999999    89999999999999764

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=92.96  E-value=0.83  Score=44.85  Aligned_cols=62  Identities=11%  Similarity=0.043  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 016258          277 VSLNKIGDLKYY----GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQ  348 (392)
Q Consensus       277 ~~~~~lg~l~~~----~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~----~g~~~~A~~~~~  348 (392)
                      .+..+||.++..    .+++++|+.+|+++++.                .....+.+||.++..    .+++++|+.+|+
T Consensus       364 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  427 (490)
T 2xm6_A          364 AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----------------GLSAAQVQLGEIYYYGLGVERDYVQAWAWFD  427 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            467788888888    78999999999888752                114567889999998    899999999999


Q ss_pred             HHHHHH
Q 016258          349 EAIKRL  354 (392)
Q Consensus       349 eal~i~  354 (392)
                      +++++-
T Consensus       428 ~A~~~~  433 (490)
T 2xm6_A          428 TASTND  433 (490)
T ss_dssp             HHHHHH
T ss_pred             HHHHCC
Confidence            999875

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=92.87  E-value=1.4  Score=49.47  Aligned_cols=144  Identities=17%  Similarity=0.147  Sum_probs=89.6

Q ss_pred             HHHHHHhhcHHHHHHHhhhcHHHHH---HHHHhcCCcH---HHHHHH--HHHHhhhhhhhhhhcchhHHHhHHHHHHHHH
Q 016258          190 AMRAFRAQNVESAKSRLSLCTEDIR---DQIERMGNTS---ELCSQL--GAVLGMLGDCCRAMGDADAAVAYFADSVEFL  261 (392)
Q Consensus       190 a~~a~~~g~~~~A~~~~~~c~~h~~---~~l~~~~~~~---~~C~~h--~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~  261 (392)
                      +..+...|.+++|...|..+..+..   ..+.....-.   ++....  ...+..+|..+...|++.+|+..|+.+    
T Consensus      1056 A~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA---- 1131 (1630)
T 1xi4_A         1056 ANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA---- 1131 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc----
Confidence            3477888999999999966553332   1222111111   122222  446667888887889999999888664    


Q ss_pred             HhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH---------hhcCCCCCcchh------hHHHH
Q 016258          262 MKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA---------VKRHSNVPSQVL------DVAVS  326 (392)
Q Consensus       262 ~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~---------~~~~~~~~~~~~------dla~s  326 (392)
                           .+.       ....+++......|++++|+.+|..+.+..+..         ..+. +....+.      .. ..
T Consensus      1132 -----dD~-------say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl-~rleele~fI~~~n~-ad 1197 (1630)
T 1xi4_A         1132 -----DDP-------SSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT-NRLAELEEFINGPNN-AH 1197 (1630)
T ss_pred             -----CCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhh-cCHHHHHHHHhCCCH-HH
Confidence                 121       134557888888999999999998877543110         0000 0011010      12 23


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          327 LAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       327 l~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                      +.++|+.+...|++++|+.+|+.+-
T Consensus      1198 ~~~iGd~le~eg~YeeA~~~Y~kA~ 1222 (1630)
T 1xi4_A         1198 IQQVGDRCYDEKMYDAAKLLYNNVS 1222 (1630)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhhh
Confidence            4568999999999999999998873

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=92.19  E-value=4.1  Score=37.01  Aligned_cols=107  Identities=10%  Similarity=0.051  Sum_probs=57.7

Q ss_pred             hHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCH-------HHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 016258          248 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDL-------QAARSYYVRSLNVRRDAVKRHSNVPSQV  320 (392)
Q Consensus       248 h~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l-------~~A~~~ye~sL~i~~~~~~~~~~~~~~~  320 (392)
                      .+++..|+++...    .+...++...+...+...+......|++       ++|+..|+++++.      -.+.     
T Consensus        33 ~~a~~~~~~al~~----~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~------~~p~-----   97 (308)
T 2ond_A           33 KRVMFAYEQCLLV----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST------LLKK-----   97 (308)
T ss_dssp             HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT------TTTT-----
T ss_pred             HHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH------hCcc-----
Confidence            3455555555432    2444444444443333333333345765       6666666666641      1232     


Q ss_pred             hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchH-HHHHHHHHHHHH
Q 016258          321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAG-LEQRRLSVLEFL  377 (392)
Q Consensus       321 ~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~-~l~~~~~~~~~l  377 (392)
                        -......++.++..+|++++|...|++++.+      +|.+.. +..+++.++..+
T Consensus        98 --~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~  147 (308)
T 2ond_A           98 --NMLLYFAYADYEESRMKYEKVHSIYNRLLAI------EDIDPTLVYIQYMKFARRA  147 (308)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------SSSCTHHHHHHHHHHHHHH
T ss_pred             --cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------cccCccHHHHHHHHHHHHh
Confidence              1334567788888888888888888887752      455443 344444444333

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=91.42  E-value=4.7  Score=33.99  Aligned_cols=101  Identities=13%  Similarity=-0.020  Sum_probs=62.3

Q ss_pred             hhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCC--------
Q 016258          243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS--------  314 (392)
Q Consensus       243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~--------  314 (392)
                      ..+.|..|+.+..-.......=.....  .......+-.+|+..+..++|..|...|.++|..++.+.+...        
T Consensus        32 d~~LY~sA~~La~lLlSl~~~~~~~~s--p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~  109 (167)
T 3ffl_A           32 AAGLHSNVRLLSSLLLTLSNNNPELFS--PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNS  109 (167)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSTTSSC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------------
T ss_pred             HhhhHHHHHHHHHHHHHhhcCCccccc--HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence            556677787777654444322111111  2334457788999999999999999999999998875432211        


Q ss_pred             ----CCCcchhhHHHHHHHHHHHHHhcCCHHHHHHH
Q 016258          315 ----NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDG  346 (392)
Q Consensus       315 ----~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~  346 (392)
                          .......| +...=+++.++..+++++.|+..
T Consensus       110 ss~p~s~~~~~e-~Elkykia~C~~~l~~~~~Ai~~  144 (167)
T 3ffl_A          110 ASTPQSQCLPSE-IEVKYKLAECYTVLKQDKDAIAI  144 (167)
T ss_dssp             -------CCCCH-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCcccccccch-HHHHHHHHHHHHHHCCHHHHHHH
Confidence                11111122 22334799999999998776643

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=91.38  E-value=1.5  Score=33.24  Aligned_cols=66  Identities=17%  Similarity=0.140  Sum_probs=49.2

Q ss_pred             hhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258          236 MLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV  305 (392)
Q Consensus       236 ~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i  305 (392)
                      .+|..++..+++..|+.-++.+......-...    .......+..+|..+..+|+++.|+.+|++++++
T Consensus        10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~----~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A           10 ELGKVAYTEADYYHTELWMEQALRQLDEGEIS----TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC----SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHhhhccCCC----cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            46677778899999999998886665322110    1122356789999999999999999999999865

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=91.29  E-value=3.5  Score=34.75  Aligned_cols=88  Identities=15%  Similarity=0.055  Sum_probs=63.8

Q ss_pred             hccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hc-------
Q 016258          288 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TL-------  359 (392)
Q Consensus       288 ~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~-------  359 (392)
                      ..|.|+.|+-...-.+.+-..    .++ +......+..+..+|+++...|+|..|..+|++||.+.+.+ ..       
T Consensus        32 d~~LY~sA~~La~lLlSl~~~----~~~-~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~  106 (167)
T 3ffl_A           32 AAGLHSNVRLLSSLLLTLSNN----NPE-LFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST  106 (167)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHH----STT-SSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred             HhhhHHHHHHHHHHHHHhhcC----Ccc-cccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence            567888888877777666332    221 22233456778999999999999999999999999999966 11       


Q ss_pred             -----------CCCchHHHHHHHHHHHHHHHH
Q 016258          360 -----------KPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       360 -----------~p~~a~~l~~~~~~~~~l~~~  380 (392)
                                 -+.++.+..+++..+-.+++.
T Consensus       107 ~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~  138 (167)
T 3ffl_A          107 GNSASTPQSQCLPSEIEVKYKLAECYTVLKQD  138 (167)
T ss_dssp             ----------CCCCHHHHHHHHHHHHHHTTCH
T ss_pred             cccCCCcccccccchHHHHHHHHHHHHHHCCH
Confidence                       233456788888888887754

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.85  E-value=3.7  Score=30.63  Aligned_cols=60  Identities=13%  Similarity=0.078  Sum_probs=43.2

Q ss_pred             HHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258          279 LNKIGDLKYYGGD---LQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  352 (392)
Q Consensus       279 ~~~lg~l~~~~g~---l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~  352 (392)
                      +..++...+..++   ..+|...|+++|++       ++.       -...+..+|.++...|+|++|+.+|++.++
T Consensus         9 ~~~~a~al~~~~~~~~~~~A~~~l~~AL~~-------dp~-------~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A            9 LAAKATTLYYLHKQAMTDEVSLLLEQALQL-------EPY-------NEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             HHHHHHHHHHTTTTCCCHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-------CcC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4455666655543   68888888888864       343       245677789999999999999988777653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=90.59  E-value=0.4  Score=47.27  Aligned_cols=97  Identities=15%  Similarity=0.121  Sum_probs=59.3

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH--H--
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR--D--  308 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~--~--  308 (392)
                      .+..+|..|...|.+.+|+.+|...                   .-..++++.+..+|++++|.+.|+++..+..  .  
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a-------------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~  184 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV-------------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC  184 (449)
T ss_dssp             -------------CTTTHHHHHHHT-------------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-------------------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHH
Confidence            5556777888888899998888744                   2467889999999999999999999865421  1  


Q ss_pred             ----------HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          309 ----------AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       309 ----------~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                                .+....-+..   -.+..+..+...|+..|.+++|+.+|++++
T Consensus       185 ~aCv~~~ef~lA~~~~l~L~---~~ad~l~~lv~~Yek~G~~eEai~lLe~aL  234 (449)
T 1b89_A          185 FACVDGKEFRLAQMCGLHIV---VHADELEELINYYQDRGYFEELITMLEAAL  234 (449)
T ss_dssp             HHHHHTTCHHHHHHTTTTTT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHcCcHHHHHHHHHHHH---hCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence                      0111111111   223335567789999999999999998885

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=90.32  E-value=0.24  Score=53.01  Aligned_cols=64  Identities=9%  Similarity=0.077  Sum_probs=56.3

Q ss_pred             CCeeccccccccccCceeccCC-CcchHHhHHhcC----CCCCCCCCccc--chhhhHHHHHHHHHHhhchh
Q 016258           88 GPLSCMICQALLFECSKCTPCS-HVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFIEGHAR  152 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~-h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~v~~~~~~~~~  152 (392)
                      +.|.|||-.++.. +|++++-| ++|=+..|.+|.    .||.-+.++..  +.||..|+..|+.+...+..
T Consensus       890 ~~F~cPIs~~lM~-DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~  960 (968)
T 3m62_A          890 DEFLDPLMYTIMK-DPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE  960 (968)
T ss_dssp             GGGBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred             HHhCCcchhhHHh-CCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence            5799999999999 99999998 699999999993    49999998876  89999999999999875443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=89.94  E-value=1.3  Score=40.81  Aligned_cols=87  Identities=5%  Similarity=-0.191  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      ..-.++.++...+++++|+.+|++++..        +.   .. .-....-++|.++..+|++++|+.+|++++.    -
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~--------~d---~~-~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~----g  200 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKW--------PD---KF-LAGAAGVAHGVAAANLALFTEAERRLTEAND----S  200 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGC--------SC---HH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----S
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcc--------CC---cc-cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc----C
Confidence            4566777999999999999999744321        10   00 1123556899999999999999999998862    1


Q ss_pred             hcCCC-chHHHHHHHHHHHHHHHH
Q 016258          358 TLKPE-EAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       358 ~~~p~-~a~~l~~~~~~~~~l~~~  380 (392)
                      ..+|. ......+++.++..+|+.
T Consensus       201 ~~~P~~~~da~~~~glaL~~lGr~  224 (282)
T 4f3v_A          201 PAGEACARAIAWYLAMARRSQGNE  224 (282)
T ss_dssp             TTTTTTHHHHHHHHHHHHHHHTCH
T ss_pred             CCCccccHHHHHHHHHHHHHcCCH
Confidence            22244 445667777777777653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=89.71  E-value=0.15  Score=50.30  Aligned_cols=54  Identities=24%  Similarity=0.339  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                      ....||+.....|.+++|+.+|.++                      ....++++++..+|+++.|++.|+++..+
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~  177 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV----------------------SNFGRLASTLVHLGEYQAAVDGARKANST  177 (449)
T ss_dssp             -------------CTTTHHHHHHHT----------------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh----------------------hhHHHHHHHHHHhccHHHHHHHHHHcCCc
Confidence            7788888888889999999988865                      24678999999999999999999988544

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=89.35  E-value=2  Score=31.78  Aligned_cols=37  Identities=27%  Similarity=0.302  Sum_probs=30.7

Q ss_pred             hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       321 ~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      .+.|..+.+.|.-....|++++|+.+|.++++.+...
T Consensus        16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~a   52 (83)
T 2w2u_A           16 EEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQL   52 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            3456666667777778899999999999999999987

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=89.34  E-value=1.3  Score=35.43  Aligned_cols=71  Identities=7%  Similarity=-0.111  Sum_probs=54.0

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHh
Q 016258          282 IGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRS----IGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       282 lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~----~g~~~~A~~~~~eal~i~e~l  357 (392)
                      ||.++...+.+++|+.+|+++.+.                ..+....+||.++..    .+++++|+.+|+++.+.    
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~----------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----   90 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL----------------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----   90 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC----------------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----
Confidence            888888888899999999998753                125678899999998    89999999999999753    


Q ss_pred             hcCCCchHHHHHHHHHHHH
Q 016258          358 TLKPEEAGLEQRRLSVLEF  376 (392)
Q Consensus       358 ~~~p~~a~~l~~~~~~~~~  376 (392)
                          .++.-..+++.+|..
T Consensus        91 ----g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           91 ----NDQDGCLILGYKQYA  105 (138)
T ss_dssp             ----TCHHHHHHHHHHHHH
T ss_pred             ----CCHHHHHHHHHHHHC
Confidence                233345555655543

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=88.13  E-value=0.29  Score=44.08  Aligned_cols=44  Identities=25%  Similarity=0.686  Sum_probs=36.8

Q ss_pred             CeeccccccccccCceeccCCCcchHHhHHhcC------CCCCCCCCccc
Q 016258           89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK------DCPLCGADIEK  132 (392)
Q Consensus        89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~------~CP~C~~~~~~  132 (392)
                      ...|.+|..++....++..|++.|=..|+..|+      .||.|+.....
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~  229 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH  229 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred             CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence            467999999988667777799999999999985      59999986543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=87.94  E-value=2.5  Score=41.24  Aligned_cols=45  Identities=18%  Similarity=0.101  Sum_probs=28.3

Q ss_pred             chhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHH-H--HhccCHHHHHHHHHHHHH
Q 016258          246 DADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDL-K--YYGGDLQAARSYYVRSLN  304 (392)
Q Consensus       246 dhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l-~--~~~g~l~~A~~~ye~sL~  304 (392)
                      ++..++.+++.+.       +...       .+..+||.+ +  ...+++++|+.+|+++++
T Consensus       232 d~~~A~~~~~~aa-------~g~~-------~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~  279 (452)
T 3e4b_A          232 DEKTAQALLEKIA-------PGYP-------ASWVSLAQLLYDFPELGDVEQMMKYLDNGRA  279 (452)
T ss_dssp             CHHHHHHHHHHHG-------GGST-------HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHc-------CCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            4466666665542       2222       356677777 3  345788888888888764

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=87.65  E-value=3.7  Score=30.29  Aligned_cols=59  Identities=24%  Similarity=0.229  Sum_probs=39.3

Q ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCc---hHHHHHHHHHHHHHHHH
Q 016258          322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEE---AGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~---a~~l~~~~~~~~~l~~~  380 (392)
                      +.|..+-+.|.-....|++++|+.+|.++++.+... ...|+.   ..+..++...+......
T Consensus         9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE~L   71 (83)
T 2v6y_A            9 DMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYL   71 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            345555666666677799999999999999999987 333332   23555555555544443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=87.22  E-value=3.3  Score=40.92  Aligned_cols=62  Identities=5%  Similarity=0.019  Sum_probs=35.4

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN  304 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~  304 (392)
                      .+..++......|++..|..+|+.+..    +.+....      ......+.+....|++++|+..|+++++
T Consensus       323 l~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~Al~  384 (530)
T 2ooe_A          323 LYFAYADYEESRMKYEKVHSIYNRLLA----IEDIDPT------LVYIQYMKFARRAEGIKSGRMIFKKARE  384 (530)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH----SSSSCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhC----ccccCch------HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            344455555566777778777776643    2333221      2445555555556666666666666654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=85.92  E-value=1.8  Score=31.60  Aligned_cols=46  Identities=13%  Similarity=0.066  Sum_probs=37.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchH-HHHHHHHHHHHHHHH
Q 016258          329 KVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAG-LEQRRLSVLEFLNNQ  380 (392)
Q Consensus       329 ~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~-~l~~~~~~~~~l~~~  380 (392)
                      +.|.++...|++++|+..|++++.+      +|.+.. ...+++.++..+|+.
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~lg~~~~~~~~~   51 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQT------EPVGKDEAYYLMGNAYRKLGDW   51 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH------CSSTHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHHcCCH
Confidence            4677888899999999999888764      678777 888889888877753

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=85.43  E-value=6.3  Score=29.68  Aligned_cols=37  Identities=24%  Similarity=0.119  Sum_probs=30.9

Q ss_pred             hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       321 ~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      .+.|..+.+.|.-....|++++|+.+|.++++.+...
T Consensus        12 l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~a   48 (93)
T 1wfd_A           12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQV   48 (93)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            3556666677777777899999999999999999997

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=84.14  E-value=4.6  Score=39.83  Aligned_cols=28  Identities=18%  Similarity=0.121  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258          278 SLNKIGDLKYYGGDLQAARSYYVRSLNV  305 (392)
Q Consensus       278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i  305 (392)
                      ....++.++...|++++|+..|++++++
T Consensus       323 l~~~~~~~~~~~g~~~~A~~~~~~al~~  350 (530)
T 2ooe_A          323 LYFAYADYEESRMKYEKVHSIYNRLLAI  350 (530)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence            4667788888899999999999998863

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=83.68  E-value=0.036  Score=40.17  Aligned_cols=41  Identities=12%  Similarity=0.186  Sum_probs=33.8

Q ss_pred             HHHHHHHHHhhhhh--------hhhhhcch--hHHHhHHHHHHHHHHhCCCC
Q 016258          226 LCSQLGAVLGMLGD--------CCRAMGDA--DAAVAYFADSVEFLMKLPMD  267 (392)
Q Consensus       226 ~C~~h~~~L~~~c~--------~C~~~gdh--h~a~~~~e~~~~~~~~L~~~  267 (392)
                      .|+.|++.|.+||.        .|. .++|  |.++++.+++.+.+.+|...
T Consensus        20 ~C~~H~e~l~lfC~~d~~~iC~~C~-~~~H~~H~~~~l~ea~~~~k~~L~~~   70 (72)
T 2csv_A           20 KCPVHGKTMELFCQTDQTCICYLCM-FQEHKNHSTVTVEEAKAEKETESGPS   70 (72)
T ss_dssp             BCTTTCCBCCEEESSSCCEECHHHH-HTTTSSSCEEEHHHHHHHHSSCCCCC
T ss_pred             cCcccCCceEEEeCCCCeEEccccC-CCCCCCCCEecHHHHHHHHHHHHHHh
Confidence            79999999999994        674 4888  99999999998888877653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=83.26  E-value=4.3  Score=39.47  Aligned_cols=56  Identities=9%  Similarity=0.128  Sum_probs=36.7

Q ss_pred             HHHHHHHHHhc----cCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHH-H--HhcCCHHHHHHHHHHHH
Q 016258          279 LNKIGDLKYYG----GDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADV-D--RSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       279 ~~~lg~l~~~~----g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~-~--~~~g~~~~A~~~~~eal  351 (392)
                      ..+||.++...    +++++|+.+|+++.          +       .....+.+||.+ +  ...+++++|+.+|+++.
T Consensus       216 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----------~-------g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa  278 (452)
T 3e4b_A          216 VDSVARVLGDATLGTPDEKTAQALLEKIA----------P-------GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR  278 (452)
T ss_dssp             HHHHHHHHTCGGGSSCCHHHHHHHHHHHG----------G-------GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCCHHHHHHHHHHHc----------C-------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence            36788888655    68899999888875          0       112345566665 3  44677777777776665

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=83.24  E-value=8  Score=28.69  Aligned_cols=40  Identities=23%  Similarity=0.078  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCC
Q 016258          323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPE  362 (392)
Q Consensus       323 la~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~  362 (392)
                      -|..+-.-|.-....|++++|+.+|.++++.+... ...|+
T Consensus        15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d   55 (86)
T 4a5x_A           15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKD   55 (86)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            34455556666677799999999999999999987 44444

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=82.51  E-value=10  Score=27.87  Aligned_cols=37  Identities=14%  Similarity=0.062  Sum_probs=29.9

Q ss_pred             hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       321 ~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      .+.|..+...|.-....|++++|+.+|.++++.+...
T Consensus        10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a   46 (85)
T 2v6x_A           10 LTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLA   46 (85)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            4456666666666667799999999999999999887

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=81.84  E-value=0.99  Score=43.07  Aligned_cols=58  Identities=24%  Similarity=0.472  Sum_probs=43.5

Q ss_pred             CeeccccccccccCceeccCCCcchHHh--H------HhcCCCCCCCCCccc--chhhhHHHHHHHHH
Q 016258           89 PLSCMICQALLFECSKCTPCSHVYCKAC--I------SRFKDCPLCGADIEK--IEADTTLQDVVDRF  146 (392)
Q Consensus        89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~C--i------~~~~~CP~C~~~~~~--~~~n~~l~~~v~~~  146 (392)
                      .|.||+=...+..+.+...|.|.-|..-  +      ...|.||.|.+.+..  +..+..+.+++...
T Consensus       249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~  316 (371)
T 3i2d_A          249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC  316 (371)
T ss_dssp             ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred             eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence            5899999988886677778999855432  1      123899999998866  88888887776543

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=80.94  E-value=9.8  Score=29.97  Aligned_cols=38  Identities=26%  Similarity=0.330  Sum_probs=30.0

Q ss_pred             hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          320 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       320 ~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      ..+.|..|.+.|.-....|+|++|+.+|.++++++...
T Consensus        14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~a   51 (117)
T 2cpt_A           14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHV   51 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence            34555566666666666799999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	392
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	8e-08
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	9e-07
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	2e-06
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	3e-06
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	3e-06
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	5e-05
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	1e-04
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	8e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-04

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 46.9 bits (111), Expect = 8e-08
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 92  CMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEKI----EADTTLQD 141
           C IC       S   PC H +C  CI+R+      CPLC   +E +    E+D+   D
Sbjct: 8   CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTIESDSEFGD 65

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 9e-07
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 9/80 (11%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRF--KDCPLCGADI--EKIEADTTLQDVVDR 145
           L C  C  +L E      C H++C  C+S      CP+C      + ++ +  L  ++  
Sbjct: 23  LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQL 82

Query: 146 FIEGHARIKRSHTNSDKEED 165
                    R+  + ++  D
Sbjct: 83  C-----SKLRNLLHDNELSD 97

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRF-------KDCPLCGADI--EKIEADTTLQ 140
           L C IC  L  +    T C H++CK C+ +          CPLC  DI    ++  T   
Sbjct: 22  LECPICLEL-IKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFS 80

Query: 141 DVVDRFIE 148
            +V+  ++
Sbjct: 81  QLVEELLK 88

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 3e-06
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRFK-DCPLCGADI 130
           L C  CQA   +C K  PC H  C  C+      CP+C A  
Sbjct: 7   LRCQQCQAE-AKCPKLLPCLHTLCSGCLEASGMQCPICQAPW 47

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 3e-06
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 92  CMICQALLFECSKCTPCSHVYCKACI-----SRFKDCPLCGADIEKIE 134
           C IC     +  K  PC H+ C +C+     S  + CP C  +I+  E
Sbjct: 26  CKICAEN-DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 72

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (92), Expect = 5e-05
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEKIE 134
           +SC IC+ +       T C H++C+ CI R        CP C       +
Sbjct: 24  ISCQICEHI-LADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 37.5 bits (87), Expect = 1e-04
 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 7/48 (14%)

Query: 90  LSCMICQALLFE---CSKCTPCSHVYCKACISRF----KDCPLCGADI 130
           + C +C A L +         C H +   C+  +      CPLC   +
Sbjct: 6   VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.1 bits (80), Expect = 8e-04
 Identities = 4/47 (8%), Positives = 13/47 (27%), Gaps = 4/47 (8%)

Query: 90  LSCMICQALLFECSKCTPCSHVYCKACIS----RFKDCPLCGADIEK 132
           + C I   +            ++ K+ +        + P+    +  
Sbjct: 1   MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 47

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 39/339 (11%), Positives = 87/339 (25%), Gaps = 53/339 (15%)

Query: 70  ASIPPKCPFGYDAQSFKIGPLSCMICQALLFECSKCTPCSHVYCKACISRFKDCPLCGAD 129
            ++  +     +A       L         +        +    +  +  +        D
Sbjct: 74  GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133

Query: 130 IEKIEADTTLQDVVDRFIEGHARIKRSHTNSDKEEDEAGENKKVIYEDVSMERGAFLVQQ 189
           +  + +D          +E           +      A  N   ++        A    +
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193

Query: 190 AMRAFRAQNVES--AKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDA 247
                    +++      +          +        L      V G L       G  
Sbjct: 194 KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI 253

Query: 248 DAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGD----------------------- 284
           D A+  +  ++E    L     +    L+ +L + G                        
Sbjct: 254 DLAIDTYRRAIE----LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309

Query: 285 ----LKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNE 340
               +K   G+++ A   Y ++L V  +    HSN              +A V +  G  
Sbjct: 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN--------------LASVLQQQGKL 355

Query: 341 DVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN 379
             A+  ++EAI+      + P  A       + L+ + +
Sbjct: 356 QEALMHYKEAIR------ISPTFADAYSNMGNTLKEMQD 388

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	392
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.34
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.3
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.22
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.17
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.12
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.07
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.02
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.92
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.86
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.82
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.82
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.75
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.62
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.55
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.51
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.37
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.34
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.3
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.29
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.22
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.14
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.13
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.13
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.11
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.11
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.08
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.98
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.95
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.95
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.94
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.92
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.85
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.84
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	97.83
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.83
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.83
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.78
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.74
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.74
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.68
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.67
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.62
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.59
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.58
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.58
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.58
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.54
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.46
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.44
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.29
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.23
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.1
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	96.79
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.64
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	96.61
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.39
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	95.51
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	95.27
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	94.8
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	93.64
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	93.58
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	91.78
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	90.69
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	89.26
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	88.87
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	87.49
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	86.9
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	85.97
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	80.65

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=3.8e-13  Score=100.42  Aligned_cols=62  Identities=19%  Similarity=0.260  Sum_probs=56.2

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc--chhhhHHHHHHHHHHhhc
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRFIEGH  150 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~~v~~~~~~~  150 (392)
                      ++|.|+||++++. +|++++|||+||+.||..|+     .||.|+.++..  +.+|..|+++|+.|.+.+
T Consensus         6 ~~l~CpIc~~l~~-dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~   74 (80)
T d2c2la2           6 DYLCGKISFELMR-EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISEN   74 (80)
T ss_dssp             STTBCTTTCSBCS-SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTC
T ss_pred             ccccCcCcCchhh-hhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHC
Confidence            6799999999999 99999999999999999983     59999998876  889999999999998643

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.30  E-value=5e-13  Score=99.26  Aligned_cols=61  Identities=15%  Similarity=0.334  Sum_probs=55.7

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc--chhhhHHHHHHHHHHhh
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK--IEADTTLQDVVDRFIEG  149 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~--~~~n~~l~~~v~~~~~~  149 (392)
                      ++|.|+||++++. +|++++|||+||+.||..|+     .||.|+.++..  +.+|..|+++|+.|.+.
T Consensus         7 ~~l~CpIc~~~m~-dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~   74 (78)
T d1t1ha_           7 EYFRCPISLELMK-DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCES   74 (78)
T ss_dssp             SSSSCTTTSCCCS-SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHH
T ss_pred             ccCCCcCcCchhh-CceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHH
Confidence            6799999999999 99999999999999999983     39999998876  88999999999999864

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.2e-12  Score=102.57  Aligned_cols=60  Identities=33%  Similarity=0.805  Sum_probs=52.8

Q ss_pred             CeeccccccccccCceeccCCCcchHHhHHhcC-------CCCCCCCCccc--chhhhHHHHHHHHHHhh
Q 016258           89 PLSCMICQALLFECSKCTPCSHVYCKACISRFK-------DCPLCGADIEK--IEADTTLQDVVDRFIEG  149 (392)
Q Consensus        89 ~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-------~CP~C~~~~~~--~~~n~~l~~~v~~~~~~  149 (392)
                      .|.|+||++++. +|++++|||+||..||..|+       .||.||..+..  +.+|..+.++|+.+++.
T Consensus        21 ~l~CpIC~~~~~-~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~~   89 (103)
T d1jm7a_          21 ILECPICLELIK-EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKI   89 (103)
T ss_dssp             HTSCSSSCCCCS-SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred             CcCCCccCchhC-CeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHHH
Confidence            588999999998 89999999999999999883       59999999875  88888888888888643

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6.6e-12  Score=97.12  Aligned_cols=61  Identities=23%  Similarity=0.588  Sum_probs=53.3

Q ss_pred             CCeeccccccccccCcee-ccCCCcchHHhHHhcC--CCCCCCCCccc--chhhhHHHHHHHHHHhh
Q 016258           88 GPLSCMICQALLFECSKC-TPCSHVYCKACISRFK--DCPLCGADIEK--IEADTTLQDVVDRFIEG  149 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~-~~C~h~fC~~Ci~~~~--~CP~C~~~~~~--~~~n~~l~~~v~~~~~~  149 (392)
                      +.+.|+||+++|. +|++ ++|||+||..||..|.  .||.|+..+..  +.+|..+.++++.+...
T Consensus        21 ~~l~C~IC~~~~~-~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~   86 (97)
T d1jm7b_          21 KLLRCSRCTNILR-EPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLCSKL   86 (97)
T ss_dssp             HTTSCSSSCSCCS-SCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred             hcCCCccCCchhh-cCceeCCCCCchhHHHHHHHHhccccccCCcCchhhCcccHHHHHHHHHHHHH
Confidence            4689999999998 7776 4899999999999995  49999998765  88999999999988754

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=1.6e-11  Score=92.21  Aligned_cols=55  Identities=27%  Similarity=0.633  Sum_probs=44.7

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC-----CCCCCCCCccc---chhhhHHHHHH
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-----DCPLCGADIEK---IEADTTLQDVV  143 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~---~~~n~~l~~~v  143 (392)
                      ..+.|+||++.+. +|++++|||+||+.||..|+     .||.||.++..   ..+...+.+++
T Consensus        22 ~~l~C~IC~~~~~-~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l   84 (86)
T d1rmda2          22 KSISCQICEHILA-DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL   84 (86)
T ss_dssp             HHTBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred             cCcCCccCCcchh-cceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHh
Confidence            4589999999998 99999999999999999983     49999998876   33444444444

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.5e-10  Score=89.34  Aligned_cols=63  Identities=17%  Similarity=0.256  Sum_probs=56.1

Q ss_pred             CCeeccccccccccCceeccCC-CcchHHhHHhcC----CCCCCCCCccc--chhhhHHHHHHHHHHhhch
Q 016258           88 GPLSCMICQALLFECSKCTPCS-HVYCKACISRFK----DCPLCGADIEK--IEADTTLQDVVDRFIEGHA  151 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~-h~fC~~Ci~~~~----~CP~C~~~~~~--~~~n~~l~~~v~~~~~~~~  151 (392)
                      ++|.||||+.++. +||+++|+ |+||+.||.+|+    .||.|+.++..  +.+|..|+++|+.|++...
T Consensus        21 ~~f~CPI~~~lm~-dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~   90 (98)
T d1wgma_          21 DEFLDPIMSTLMC-DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERK   90 (98)
T ss_dssp             TTTBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred             HHhCCcCchhHHH-HHHhcccccchhhHHHHHHHHHhcCCcccccccccchhhcchHHHHHHHHHHHHHHH
Confidence            4699999999999 99999977 589999999995    49999999886  9999999999999987544

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.8e-11  Score=83.33  Aligned_cols=44  Identities=36%  Similarity=0.794  Sum_probs=39.5

Q ss_pred             CCeeccccccccccCceeccCCCcchHHhHHhcC-CCCCCCCCccc
Q 016258           88 GPLSCMICQALLFECSKCTPCSHVYCKACISRFK-DCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~~-~CP~C~~~~~~  132 (392)
                      +.+.|+||++.+. +|++++|||+||..||.+|. .||.||..+..
T Consensus         5 ~~l~C~IC~~~~~-~p~~lpCgH~fC~~Ci~~~~~~CP~Cr~~~~~   49 (56)
T d1bora_           5 QFLRCQQCQAEAK-CPKLLPCLHTLCSGCLEASGMQCPICQAPWPL   49 (56)
T ss_dssp             CCSSCSSSCSSCB-CCSCSTTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred             CCCCCcccCcccC-CCEEecCCCHHhHHHHHcCCCcCcCCCCcccC
Confidence            5689999999988 99999999999999999884 69999988764

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.92  E-value=7.2e-08  Score=79.90  Aligned_cols=138  Identities=11%  Similarity=0.045  Sum_probs=111.1

Q ss_pred             hhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh-hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016258          238 GDCCRAMGDADAAVAYFADSVEFLMKLPMDDL-EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV  316 (392)
Q Consensus       238 c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~-e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~  316 (392)
                      +...+..|+|..|+..|+++.++...+..... .........++++|..+..+|++++|+..|+++|.+..+......+.
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            44555789999999999999998888765432 22445567899999999999999999999999999988765544432


Q ss_pred             CcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCCchHHHHHHHHHHHHHH
Q 016258          317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       317 ~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~~a~~l~~~~~~~~~l~  378 (392)
                         ....+..+.++|.++..+|++++|+..|++++++..+. ...+....+++.++.-+..||
T Consensus        96 ---~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l~~lg  155 (156)
T d2hr2a1          96 ---GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQLG  155 (156)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHHHH
T ss_pred             ---cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHHHHcC
Confidence               23455678899999999999999999999999999988 555666777888888777776

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=5.8e-10  Score=82.39  Aligned_cols=42  Identities=31%  Similarity=0.862  Sum_probs=37.9

Q ss_pred             eeccccccccccCceeccCCCcchHHhHHhc-----CCCCCCCCCccc
Q 016258           90 LSCMICQALLFECSKCTPCSHVYCKACISRF-----KDCPLCGADIEK  132 (392)
Q Consensus        90 ~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~-----~~CP~C~~~~~~  132 (392)
                      ..|+||++.+. +|++++|||.||..||..|     ..||+||..+..
T Consensus        24 ~~C~IC~~~~~-~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~   70 (79)
T d1fbva4          24 QLCKICAENDK-DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG   70 (79)
T ss_dssp             TBCTTTSSSBC-CEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCC
T ss_pred             CCCccCCCcCC-CeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccC
Confidence            56999999988 9999999999999999988     249999998875

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.82  E-value=5.5e-10  Score=80.09  Aligned_cols=43  Identities=37%  Similarity=0.878  Sum_probs=37.4

Q ss_pred             eeccccccccccCceeccCCCcchHHhHHhc----CCCCCCCCCccc
Q 016258           90 LSCMICQALLFECSKCTPCSHVYCKACISRF----KDCPLCGADIEK  132 (392)
Q Consensus        90 ~~C~iC~~~~~~~p~~~~C~h~fC~~Ci~~~----~~CP~C~~~~~~  132 (392)
                      -.|+||++.+.+.+++++|||+||..||.+|    ..||.||.++..
T Consensus         6 d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_           6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            4699999998856778999999999999999    469999997764

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.82  E-value=5.5e-10  Score=76.83  Aligned_cols=42  Identities=10%  Similarity=0.256  Sum_probs=37.1

Q ss_pred             eeccccccccccCceec-cCCCcchHHhHHhc----CCCCCCCCCccc
Q 016258           90 LSCMICQALLFECSKCT-PCSHVYCKACISRF----KDCPLCGADIEK  132 (392)
Q Consensus        90 ~~C~iC~~~~~~~p~~~-~C~h~fC~~Ci~~~----~~CP~C~~~~~~  132 (392)
                      |.|+||++++. +|+.+ .|||+||+.||.+|    ..||.||.++..
T Consensus         1 l~C~Ic~~~~~-~Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~   47 (56)
T d2baya1           1 MLCAISGKVPR-RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI   47 (56)
T ss_dssp             CCCTTTCSCCS-SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             CCCccCCchHH-hcCccCCCCCcccHHHHHHHHhhccCCCccCCcCCH
Confidence            57999999998 88876 59999999999999    469999998765

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.6e-09  Score=76.89  Aligned_cols=45  Identities=24%  Similarity=0.742  Sum_probs=36.4

Q ss_pred             CCeeccccccccccC----ceeccCCCcchHHhHHhcC-----CCCCCCCCccc
Q 016258           88 GPLSCMICQALLFEC----SKCTPCSHVYCKACISRFK-----DCPLCGADIEK  132 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~----p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~~  132 (392)
                      ++..|+||++.+...    .++++|||.||..||..|+     .||.||+.+..
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccc
Confidence            578999999865423    3677999999999999983     49999998754

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=6.9e-09  Score=70.00  Aligned_cols=42  Identities=24%  Similarity=0.536  Sum_probs=34.4

Q ss_pred             eecccccccccc---CceeccCCCcchHHhHHhcC-----CCCCCCCCcc
Q 016258           90 LSCMICQALLFE---CSKCTPCSHVYCKACISRFK-----DCPLCGADIE  131 (392)
Q Consensus        90 ~~C~iC~~~~~~---~p~~~~C~h~fC~~Ci~~~~-----~CP~C~~~~~  131 (392)
                      +.|+||++.+..   .++.++|||.||..||.+|.     .||.||.++.
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~   50 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   50 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCC
Confidence            579999998753   24566899999999999994     3999998775

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=3.6e-07  Score=69.19  Aligned_cols=87  Identities=13%  Similarity=0.098  Sum_probs=72.0

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 016258          279 LNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLT  358 (392)
Q Consensus       279 ~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~  358 (392)
                      .=+||.+.+..|++.+|+..|++++++.......       ..+.+..+.+||.++..+|++++|+..|++++++     
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~-------~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l-----   75 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEIS-------TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----   75 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC-------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhcc-------CccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh-----
Confidence            3479999999999999999999999876542211       2356788999999999999999999999999876     


Q ss_pred             cCCCchHHHHHHHHHHHHHH
Q 016258          359 LKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       359 ~~p~~a~~l~~~~~~~~~l~  378 (392)
                       +|+....+.+++.+...|.
T Consensus        76 -~P~~~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          76 -DPEHQRANGNLKYFEYIMA   94 (95)
T ss_dssp             -CTTCHHHHHHHHHHHHHHH
T ss_pred             -CcCCHHHHHHHHHHHHHhC
Confidence             6898889998877666553

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.51  E-value=2.4e-08  Score=68.06  Aligned_cols=44  Identities=25%  Similarity=0.690  Sum_probs=35.3

Q ss_pred             CCeecccccccccc--Cceec-cCCCcchHHhHHhcC----CCCCCCCCcc
Q 016258           88 GPLSCMICQALLFE--CSKCT-PCSHVYCKACISRFK----DCPLCGADIE  131 (392)
Q Consensus        88 ~~~~C~iC~~~~~~--~p~~~-~C~h~fC~~Ci~~~~----~CP~C~~~~~  131 (392)
                      +...|+||++.+.+  ..+.+ .|+|.||..||..|.    .||.||.++.
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            45779999999873  24444 699999999999995    4999998763

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=6.3e-06  Score=74.66  Aligned_cols=133  Identities=9%  Similarity=-0.049  Sum_probs=105.3

Q ss_pred             hhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCC
Q 016258          235 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS  314 (392)
Q Consensus       235 ~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~  314 (392)
                      ...+.++..++++..|+..|+++.+....+..     .......+.++|.++...|++++|+..|++++++.....    
T Consensus        41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~-----~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~----  111 (290)
T d1qqea_          41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGN-----EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG----  111 (290)
T ss_dssp             HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc----
Confidence            34466777889999999999999888777655     344678899999999999999999999999999876532    


Q ss_pred             CCCcchhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          315 NVPSQVLDVAVSLAKVADVDRS-IGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       315 ~~~~~~~dla~sl~~la~~~~~-~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                          .....+..+.++|.++.. +|+++.|++.|++++.+.+.....+.......+++.++..+|+.
T Consensus       112 ----~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y  174 (290)
T d1qqea_         112 ----QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY  174 (290)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ----cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChH
Confidence                122456678899998865 69999999999999999887744455555677778887776643

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.34  E-value=8.7e-06  Score=73.66  Aligned_cols=141  Identities=14%  Similarity=0.086  Sum_probs=104.3

Q ss_pred             HhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHH
Q 016258          195 RAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHT  274 (392)
Q Consensus       195 ~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~  274 (392)
                      .++++++|..+|..+.+....    .. +   -+.....+..++.++..+|++..|+.+++.+..+....+.     ...
T Consensus        49 ~~~~~~~A~~~y~kA~~~~~~----~~-~---~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~  115 (290)
T d1qqea_          49 LRKELNLAGDSFLKAADYQKK----AG-N---EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-----FRR  115 (290)
T ss_dssp             HTTCTHHHHHHHHHHHHHHHH----TT-C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHH
T ss_pred             HCcCHHHHHHHHHHHHHHHHH----cC-C---CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc-----chh
Confidence            567788888877644332111    01 0   1223456677788888899999999999999888887754     333


Q ss_pred             HHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          275 LSVSLNKIGDLKYY-GGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       275 ls~~~~~lg~l~~~-~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                      ....+.++|.++.. .|++++|+..|++++++.....        .....+..+.++|.++..+|++++|+..|++++.+
T Consensus       116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~--------~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~  187 (290)
T d1qqea_         116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--------SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS  187 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC--------chhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence            45678899998865 5999999999999998766431        12345677899999999999999999999998876


Q ss_pred             HHH
Q 016258          354 LES  356 (392)
Q Consensus       354 ~e~  356 (392)
                      ...
T Consensus       188 ~~~  190 (290)
T d1qqea_         188 SMG  190 (290)
T ss_dssp             TSS
T ss_pred             Ccc
Confidence            543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.30  E-value=2e-06  Score=70.86  Aligned_cols=105  Identities=12%  Similarity=0.082  Sum_probs=79.0

Q ss_pred             HHHHHHHHH--HHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          274 TLSVSLNKI--GDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       274 ~ls~~~~~l--g~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                      .++.+...+  |..+...|++++|+..|+++|++.....+...  .......+..+.++|.++..+|++++|+..|++++
T Consensus         5 ~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~--~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1           5 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEA--FDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSC--CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhh--cccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            355566666  66777789999999999999998766433222  12233567789999999999999999999999999


Q ss_pred             HHHHHh-hcCCC----chHHHHHHHHHHHHHHHH
Q 016258          352 KRLESL-TLKPE----EAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       352 ~i~e~l-~~~p~----~a~~l~~~~~~~~~l~~~  380 (392)
                      .+..+. ...++    ....+.+++.+|..+|+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~  116 (156)
T d2hr2a1          83 HYFNRRGELNQDEGKLWISAVYSRALALDGLGRG  116 (156)
T ss_dssp             HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hcccccccccccccchhHHHHhhhHHHHHHHHHH
Confidence            999987 33333    334567888888888764

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=3.1e-05  Score=64.49  Aligned_cols=130  Identities=14%  Similarity=0.110  Sum_probs=101.5

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh----hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL----EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR  307 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~----e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~  307 (392)
                      ..+...|..++..|++..|+..|+.+............    .+.........+++.++..+|++++|+.+|+++|.+  
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~--   91 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--   91 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc--
Confidence            35556788888999999999999998776554333222    223444566788999999999999999999999977  


Q ss_pred             HHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 016258          308 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQL  381 (392)
Q Consensus       308 ~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~  381 (392)
                           .|.       -+..+.++|.++..+|+++.|+..|++++++      +|.+..+...++.+...+....
T Consensus        92 -----~p~-------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l------~P~n~~~~~~l~~~~~~~~~~~  147 (170)
T d1p5qa1          92 -----DSN-------NEKGLSRRGEAHLAVNDFELARADFQKVLQL------YPNNKAAKTQLAVCQQRIRRQL  147 (170)
T ss_dssp             -----CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHHHHHH
T ss_pred             -----ccc-------chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHH
Confidence                 233       2557889999999999999999999998774      6888888888888877666554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.2e-05  Score=63.76  Aligned_cols=102  Identities=14%  Similarity=0.203  Sum_probs=84.5

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  312 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~  312 (392)
                      .+...|..++..|++.+|+.+|.++...    .+...       ..+.++|.++..+|++++|+..|+++|++.....  
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~----~p~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~--   72 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKEL----DPTNM-------TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR--   72 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CcccH-------HHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH--
Confidence            3456788888999999999999988754    33332       3789999999999999999999999998765432  


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258          313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  352 (392)
Q Consensus       313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~  352 (392)
                           .....++..+..+|.++..++++++|+.+|++++.
T Consensus        73 -----~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          73 -----EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             -----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence                 23457888999999999999999999999999975

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=4e-07  Score=71.57  Aligned_cols=44  Identities=27%  Similarity=0.634  Sum_probs=35.0

Q ss_pred             CeeccccccccccC-----------------ceeccCCCcchHHhHHhcC---------CCCCCCCCccc
Q 016258           89 PLSCMICQALLFEC-----------------SKCTPCSHVYCKACISRFK---------DCPLCGADIEK  132 (392)
Q Consensus        89 ~~~C~iC~~~~~~~-----------------p~~~~C~h~fC~~Ci~~~~---------~CP~C~~~~~~  132 (392)
                      +..|+||++.|.+.                 ..+++|+|.||..||..|.         .||+||..+..
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            45799999987521                 3578999999999999993         49999986643

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.3e-06  Score=78.41  Aligned_cols=116  Identities=20%  Similarity=0.282  Sum_probs=81.7

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  312 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~  312 (392)
                      .+..++.++...|++..|+.+++.+...    .+...       .....++.++...|++++|+..|++++++       
T Consensus       273 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------  334 (388)
T d1w3ba_         273 AYCNLANALKEKGSVAEAEDCYNTALRL----CPTHA-------DSLNNLANIKREQGNIEEAVRLYRKALEV-------  334 (388)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHTTTCHHHHHHHHHHHTTS-------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhhhcc----CCccc-------hhhhHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence            3444555555666666666666544221    22221       34566777888888888888888877643       


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      .++       .+..+.++|.++..+|++++|+..|+++++      .+|+++....+++.+|..+|+
T Consensus       335 ~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~------l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         335 FPE-------FAAAHSNLASVLQQQGKLQEALMHYKEAIR------ISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             CTT-------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT------TCTTCHHHHHHHHHHHHHTCC
T ss_pred             CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCC
Confidence            332       355778899999999999999999999875      478888888889888877764

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.13  E-value=6.3e-05  Score=62.18  Aligned_cols=129  Identities=16%  Similarity=0.192  Sum_probs=96.9

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHh---CCC--CChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMK---LPM--DDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR  306 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~---L~~--~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~  306 (392)
                      ..+...+...+..|++..|+..|.++......   ...  ....+.......+.++|.++..+|++++|+..|.++|++ 
T Consensus        28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-  106 (169)
T d1ihga1          28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-  106 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-
Confidence            34455676666889999999888877544321   111  111234556677889999999999999999999999865 


Q ss_pred             HHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          307 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       307 ~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                            .+.       -+..+-++|.++..+|+++.|+..|++++++      +|++......+..+...+...
T Consensus       107 ------~p~-------~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l------~p~n~~~~~~l~~~~~~l~~~  161 (169)
T d1ihga1         107 ------DPS-------NTKALYRRAQGWQGLKEYDQALADLKKAQEI------APEDKAIQAELLKVKQKIKAQ  161 (169)
T ss_dssp             ------CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHH
T ss_pred             ------hhh-------hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHH
Confidence                  232       2556889999999999999999999999875      677888888888887766544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.11  E-value=0.00014  Score=60.10  Aligned_cols=130  Identities=12%  Similarity=0.043  Sum_probs=100.5

Q ss_pred             HHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh----hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 016258          232 AVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL----EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRR  307 (392)
Q Consensus       232 ~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~----e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~  307 (392)
                      ..+.-.|...+..|++..|+..|..+............    .....+.....+++.++..+|++.+|+.+|+++|.+  
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l--   93 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL--   93 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc--
Confidence            34555677777899999999999998777654443322    234455667788999999999999999999999866  


Q ss_pred             HHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHh
Q 016258          308 DAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQL  381 (392)
Q Consensus       308 ~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~~  381 (392)
                           .+.       -...+-++|.++..+|++++|+..|++++.+      +|++......++.+...+....
T Consensus        94 -----~p~-------~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l------~P~n~~~~~~l~~~~~~~~~~~  149 (168)
T d1kt1a1          94 -----DSA-------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV------NPQNKAARLQIFMCQKKAKEHN  149 (168)
T ss_dssp             -----CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred             -----ccc-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHhHH
Confidence                 333       2456788999999999999999999987753      7888888888888877776543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.11  E-value=0.0001  Score=60.03  Aligned_cols=127  Identities=13%  Similarity=0.114  Sum_probs=96.6

Q ss_pred             HhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhH-----HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 016258          234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEI-----IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRD  308 (392)
Q Consensus       234 L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~-----~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~  308 (392)
                      +..-|...+..|++..|+..|.++..+...........     .........++|.++..+|++++|+.+|.++|++   
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~---   96 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI---   96 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc---
Confidence            33456666688999999999998876655544433222     2223456778999999999999999999999865   


Q ss_pred             HhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          309 AVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       309 ~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                          .+.+       +..+-++|.++..+|+++.|+..|++++.+      +|.+......+..+...|...
T Consensus        97 ----~p~~-------~ka~~~~g~~~~~lg~~~~A~~~~~~al~l------~P~n~~~~~~l~~~~~kl~~~  151 (153)
T d2fbna1          97 ----DKNN-------VKALYKLGVANMYFGFLEEAKENLYKAASL------NPNNLDIRNSYELCVNKLKEA  151 (153)
T ss_dssp             ----STTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHHHH
T ss_pred             ----cchh-------hhhhHHhHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHH
Confidence                3332       457889999999999999999999998866      688888888888887766543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.2e-05  Score=63.68  Aligned_cols=68  Identities=15%  Similarity=0.147  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258          276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  355 (392)
Q Consensus       276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e  355 (392)
                      +....++|+.++..|++++|+.+|.++|++       .+.       .+..+.++|.++..+|++++|+..|++++++-.
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~-------~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~   69 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL-------DPT-------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR   69 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------Ccc-------cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCc
Confidence            346789999999999999999999999976       232       255789999999999999999999999998876


Q ss_pred             Hh
Q 016258          356 SL  357 (392)
Q Consensus       356 ~l  357 (392)
                      +.
T Consensus        70 ~~   71 (128)
T d1elra_          70 EN   71 (128)
T ss_dssp             HS
T ss_pred             cc
Confidence            54

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=7.7e-05  Score=60.89  Aligned_cols=115  Identities=10%  Similarity=0.127  Sum_probs=88.5

Q ss_pred             HHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 016258          230 LGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA  309 (392)
Q Consensus       230 h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~  309 (392)
                      ....|..-|..++..|++..|+..|+.+...    .+..       ...+.++|.++..+|++++|+..|+++|++.   
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~----~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~---   74 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIEL----NPSN-------AIYYGNRSLAYLRTECYGYALGDATRAIELD---   74 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhcccc----chhh-------hhhhhhhHHHHHhccccchHHHHHHHHHHHc---
Confidence            3445666788888999999999999887654    3333       3467899999999999999999999999772   


Q ss_pred             hhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 016258          310 VKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLE  375 (392)
Q Consensus       310 ~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~  375 (392)
                          +.       .+..+.++|.++..+|++++|+..|++++.+      +|.+......++.+..
T Consensus        75 ----p~-------~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~------~p~~~~~~~~l~~~~~  123 (159)
T d1a17a_          75 ----KK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV------KPHDKDAKMKYQECNK  123 (159)
T ss_dssp             ----TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHH
T ss_pred             ----cc-------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHH
Confidence                32       2456888999999999999999999988765      4555555555544433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=1.1e-05  Score=67.92  Aligned_cols=100  Identities=12%  Similarity=-0.012  Sum_probs=82.2

Q ss_pred             HHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Q 016258          233 VLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKR  312 (392)
Q Consensus       233 ~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~  312 (392)
                      .|...|...+..|++..|+.+|+.+.+.    .+..       ...+.++|.++..+|++++|+..|+++|++       
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~----~p~~-------~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-------   67 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAITR----NPLV-------AVYYTNRALCYLKMQQPEQALADCRRALEL-------   67 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-------HHHHHhHHHHHhhhhhhhhhhHHHHHHHHh-------
Confidence            4566788888999999999999888654    2333       347889999999999999999999999855       


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          313 HSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       313 ~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      .+.       .+..+.++|.++..+|++++|+..|++++.+--..
T Consensus        68 ~p~-------~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          68 DGQ-------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             CTT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCC-------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            232       35578899999999999999999999999876543

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.1e-06  Score=64.08  Aligned_cols=29  Identities=34%  Similarity=0.668  Sum_probs=25.1

Q ss_pred             ceeccCCCcchHHhHHhcC----CCCCCCCCcc
Q 016258          103 SKCTPCSHVYCKACISRFK----DCPLCGADIE  131 (392)
Q Consensus       103 p~~~~C~h~fC~~Ci~~~~----~CP~C~~~~~  131 (392)
                      ++.++|+|.|+..||..|.    .||+||..+.
T Consensus        52 ~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          52 VAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             EEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             eEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            4678999999999999994    5999998764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=9.8e-06  Score=69.09  Aligned_cols=136  Identities=14%  Similarity=0.003  Sum_probs=96.6

Q ss_pred             HHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCCh
Q 016258          190 AMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDL  269 (392)
Q Consensus       190 a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~  269 (392)
                      ++.++..|+++.|...|...          .+.+       ...+..+|.++..+|+|..|+..|+++.++    .+.. 
T Consensus        12 g~~~~~~~d~~~Al~~~~~i----------~~~~-------~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l----dp~~-   69 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV----------QDPH-------SRICFNIGCMYTILKNMTEAEKAFTRSINR----DKHL-   69 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----------SSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-
T ss_pred             HHHHHHCCCHHHHHHHHHhc----------CCCC-------HHHHHHHHHHHHHcCCchhHHHHHHHHHHH----hhhh-
Confidence            34677889999999887521          1112       235678899998999999999999988643    2322 


Q ss_pred             hHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC--CcchhhHHHHHHHHHHHHHhcCCHHHHHHHH
Q 016258          270 EIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV--PSQVLDVAVSLAKVADVDRSIGNEDVAVDGF  347 (392)
Q Consensus       270 e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~--~~~~~dla~sl~~la~~~~~~g~~~~A~~~~  347 (392)
                            ..+..++|.++..+|++++|+..|++++...+......-..  ..........+.++|.++..+|++++|++.|
T Consensus        70 ------~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l  143 (192)
T d1hh8a_          70 ------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL  143 (192)
T ss_dssp             ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ------hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence                  45788999999999999999999999997432110000000  0001123456779999999999999999988


Q ss_pred             HHHHHH
Q 016258          348 QEAIKR  353 (392)
Q Consensus       348 ~eal~i  353 (392)
                      ++++.+
T Consensus       144 ~~A~~~  149 (192)
T d1hh8a_         144 ALATSM  149 (192)
T ss_dssp             HHHHTT
T ss_pred             HHHHhc
Confidence            877654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=1.6e-05  Score=66.90  Aligned_cols=84  Identities=15%  Similarity=0.120  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258          277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  356 (392)
Q Consensus       277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~  356 (392)
                      ..+.+.|+.+...|++++|+..|+++|++       .+.       .+..+.++|.+|..+|++++|+..|++++.    
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~-------~p~-------~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~----   66 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITR-------NPL-------VAVYYTNRALCYLKMQQPEQALADCRRALE----   66 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CSC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-------CHHHHHhHHHHHhhhhhhhhhhHHHHHHHH----
Confidence            35778899999999999999999999976       233       366788999999999999999999999864    


Q ss_pred             hhcCCCchHHHHHHHHHHHHHHHH
Q 016258          357 LTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       357 l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                        .+|..+....++|.+|..+|+.
T Consensus        67 --l~p~~~~a~~~lg~~~~~l~~~   88 (201)
T d2c2la1          67 --LDGQSVKAHFFLGQCQLEMESY   88 (201)
T ss_dssp             --SCTTCHHHHHHHHHHHHHTTCH
T ss_pred             --hCCCcHHHHHHHHHHHHHCCCH
Confidence              4788888888899999888763

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=0.0009  Score=59.35  Aligned_cols=147  Identities=15%  Similarity=0.090  Sum_probs=109.4

Q ss_pred             HHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChh
Q 016258          191 MRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLE  270 (392)
Q Consensus       191 ~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e  270 (392)
                      ..++..|++++|...+..+       +...+.+..  +.....+..++.++...|++..|+.+++.+.........    
T Consensus        20 ~~~~~~g~~~~A~~~~~~a-------L~~~~~~~~--~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~----   86 (366)
T d1hz4a_          20 QVAINDGNPDEAERLAKLA-------LEELPPGWF--YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV----   86 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHH-------HHTCCTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred             HHHHHCCCHHHHHHHHHHH-------HhhCcCCCc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc----
Confidence            3678899999998877532       222232221  122345667888888999999999999999877776644    


Q ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258          271 IIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA  350 (392)
Q Consensus       271 ~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea  350 (392)
                       ..........++.++...|++..+...|.+++.+.........      ...+.....+|.++..+|+++.|...|+++
T Consensus        87 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~a~~~~~~~  159 (366)
T d1hz4a_          87 -WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL------PMHEFLVRIRAQLLWAWARLDEAEASARSG  159 (366)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS------THHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchh------hHHHHHHHHHHHHHHHhcchhhhHHHHHHH
Confidence             3334456788999999999999999999999988765433222      245666778999999999999999999988


Q ss_pred             HHHHHHh
Q 016258          351 IKRLESL  357 (392)
Q Consensus       351 l~i~e~l  357 (392)
                      +.+....
T Consensus       160 ~~~~~~~  166 (366)
T d1hz4a_         160 IEVLSSY  166 (366)
T ss_dssp             HHHTTTS
T ss_pred             HHHhhhh
Confidence            8877654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=3.3e-05  Score=64.26  Aligned_cols=100  Identities=12%  Similarity=0.051  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchh-hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL-DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       275 ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~-dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                      ....+++.|+.++..|++++|+..|+++|.+................ -.+..+.++|.++..+|++++|+..+++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            45677889999999999999999999999864321111110000111 12345678999999999999999999999866


Q ss_pred             HHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          354 LESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       354 ~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                            +|.++....+++.++..+|+.
T Consensus        92 ------~p~~~~a~~~~g~~~~~~g~~  112 (170)
T d1p5qa1          92 ------DSNNEKGLSRRGEAHLAVNDF  112 (170)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCH
T ss_pred             ------cccchhhhHHHHHHHHHhhhH
Confidence                  788999999999999998864

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=97.83  E-value=4e-06  Score=57.68  Aligned_cols=43  Identities=23%  Similarity=0.576  Sum_probs=35.3

Q ss_pred             CCeeccccccccccCceeccC-----CCcchHHhHHhcC------CCCCCCCCcc
Q 016258           88 GPLSCMICQALLFECSKCTPC-----SHVYCKACISRFK------DCPLCGADIE  131 (392)
Q Consensus        88 ~~~~C~iC~~~~~~~p~~~~C-----~h~fC~~Ci~~~~------~CP~C~~~~~  131 (392)
                      +...|+||++.+. ++...+|     +|.|+..||..|.      .||+||+++.
T Consensus         5 d~~~C~IC~~~~~-~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           5 DVPVCWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECS-CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCccCC-CceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            4578999999876 6666665     4999999999993      5999999875

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.83  E-value=8.4e-05  Score=61.38  Aligned_cols=102  Identities=16%  Similarity=0.162  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC--CcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016258          273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV--PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEA  350 (392)
Q Consensus       273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~--~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~ea  350 (392)
                      ..+.....+.|..+...|++.+|+..|.++|+............  .......+..+.++|.++..+|++++|+..|+++
T Consensus        24 ~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a  103 (169)
T d1ihga1          24 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  103 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhh
Confidence            34556678889999999999999999999998665433222111  1122345667889999999999999999999998


Q ss_pred             HHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          351 IKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       351 l~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      ++      .+|..+....++|.++..+|+.
T Consensus       104 l~------~~p~~~~a~~~~g~~~~~l~~~  127 (169)
T d1ihga1         104 LE------IDPSNTKALYRRAQGWQGLKEY  127 (169)
T ss_dssp             HT------TCTTCHHHHHHHHHHHHHTTCH
T ss_pred             hh------hhhhhhhHHHhHHHHHHHccCH
Confidence            75      4788888899999999888764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=0.00011  Score=63.89  Aligned_cols=88  Identities=17%  Similarity=0.125  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258          273 HTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  352 (392)
Q Consensus       273 ~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~  352 (392)
                      ...+..+-++|.++...|++++|+..|+++|++       .+.       .+..+.++|.++..+|++++|+..|++++.
T Consensus        34 ~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l-------~p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   99 (259)
T d1xnfa_          34 DERAQLLYERGVLYDSLGLRALARNDFSQALAI-------RPD-------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLE   99 (259)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc-------CCC-------CHHHHhhhchHHHHHHHHHHhhhhhhHHHH
Confidence            345667888999999999999999999999876       232       255678889999999999999988888876


Q ss_pred             HHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          353 RLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       353 i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      +      +|..+....+++.++..+|+.
T Consensus       100 ~------~p~~~~a~~~lg~~~~~~g~~  121 (259)
T d1xnfa_         100 L------DPTYNYAHLNRGIALYYGGRD  121 (259)
T ss_dssp             H------CTTCTHHHHHHHHHHHHTTCH
T ss_pred             H------HhhhhhhHHHHHHHHHHHhhH
Confidence            4      566677777788877776653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=0.0001  Score=57.08  Aligned_cols=109  Identities=14%  Similarity=0.206  Sum_probs=86.0

Q ss_pred             HhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcC
Q 016258          234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH  313 (392)
Q Consensus       234 L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~  313 (392)
                      |..-|..+...|++.+|+.+|..+...    .+...       ..+.++|.++..+|++++|+..|.+++++.       
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~----~p~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------   67 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKL----DPHNH-------VLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-------   67 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc----CCcch-------hhhhcccccccccccccccchhhhhHHHhc-------
Confidence            445677788899999999999887543    34333       468889999999999999999999999763       


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Q 016258          314 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSV  373 (392)
Q Consensus       314 ~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~  373 (392)
                      +.       ....+.++|.++..+|++++|+..|+++++      .+|.+..+...++.+
T Consensus        68 p~-------~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~------~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          68 PD-------WGKGYSRKAAALEFLNRFEEAKRTYEEGLK------HEANNPQLKEGLQNM  114 (117)
T ss_dssp             TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------TCTTCHHHHHHHHHH
T ss_pred             cc-------hhhHHHHHHHHHHHccCHHHHHHHHHHHHH------hCCCCHHHHHHHHHH
Confidence            22       245688999999999999999999988884      467777777766654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.74  E-value=5.2e-05  Score=62.79  Aligned_cols=101  Identities=12%  Similarity=0.045  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcch-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258          274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQV-LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  352 (392)
Q Consensus       274 ~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~-~dla~sl~~la~~~~~~g~~~~A~~~~~eal~  352 (392)
                      ..+..+...|+.....|++.+|+..|.++|.+............... ...+..+.++|.++..+|++.+|+..|++++.
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            34567889999999999999999999999987532111110000011 12445677899999999999999999999886


Q ss_pred             HHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          353 RLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       353 i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      +      +|.+.....+++.++..+|+.
T Consensus        93 l------~p~~~~a~~~~~~~~~~l~~~  114 (168)
T d1kt1a1          93 L------DSANEKGLYRRGEAQLLMNEF  114 (168)
T ss_dssp             H------CTTCHHHHHHHHHHHHHTTCH
T ss_pred             c------ccchHHHHHHHHHHHHHcCCH
Confidence            5      788888888899999888764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=0.00042  Score=61.63  Aligned_cols=137  Identities=15%  Similarity=0.071  Sum_probs=101.8

Q ss_pred             HHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 016258          230 LGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA  309 (392)
Q Consensus       230 h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~  309 (392)
                      |.+...+.+.+....|++.+|+.+++++...   .+. ....  ....++..+|.++...|++++|+..|++++++....
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~---~~~-~~~~--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~   84 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEE---LPP-GWFY--SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH   84 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CCT-TCHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcC-CCcH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence            4445555677777899999999999887543   222 2222  223468889999999999999999999999876643


Q ss_pred             hhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--hcCCCchHHHHHHHHHHHHHHHH
Q 016258          310 VKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL--TLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       310 ~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l--~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      .        .....+..+.+++.++...|++..|...|.+++.+....  ...+..+.....++.++..+++.
T Consensus        85 ~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  149 (366)
T d1hz4a_          85 D--------VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL  149 (366)
T ss_dssp             T--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred             c--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcch
Confidence            1        123556678889999999999999999999999999887  33444555666777777766543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=0.00023  Score=61.76  Aligned_cols=99  Identities=15%  Similarity=0.087  Sum_probs=80.5

Q ss_pred             HHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 016258          230 LGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDA  309 (392)
Q Consensus       230 h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~  309 (392)
                      ....+...|.+....|++..|+..|+.+...    .+...       .++.++|.++..+|++++|+..|++++++.   
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l----~p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---  101 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAI----RPDMP-------EVFNYLGIYLTQAGNFDAAYEAFDSVLELD---  101 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc----CCCCH-------HHHhhhchHHHHHHHHHHhhhhhhHHHHHH---
Confidence            4556677888888899999999999888644    34443       367899999999999999999999999762   


Q ss_pred             hhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 016258          310 VKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKR  353 (392)
Q Consensus       310 ~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i  353 (392)
                          +..       +..+.++|.++..+|+++.|+..|++++.+
T Consensus       102 ----p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_         102 ----PTY-------NYAHLNRGIALYYGGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             ----TTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ----hhh-------hhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence                222       346788999999999999999999998764

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=5.9e-06  Score=62.23  Aligned_cols=42  Identities=19%  Similarity=0.661  Sum_probs=32.3

Q ss_pred             CCeecccccccccc-C-ceeccCCCcchHHhHHhcC------------CCCCCCCC
Q 016258           88 GPLSCMICQALLFE-C-SKCTPCSHVYCKACISRFK------------DCPLCGAD  129 (392)
Q Consensus        88 ~~~~C~iC~~~~~~-~-p~~~~C~h~fC~~Ci~~~~------------~CP~C~~~  129 (392)
                      ....|+||++.+.. + ++.++|+|.||..||..|+            .||.|+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~   59 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACP   59 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCS
T ss_pred             CCCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCCC
Confidence            45789999997642 2 5667899999999998872            39986654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.00053  Score=61.44  Aligned_cols=91  Identities=11%  Similarity=0.050  Sum_probs=62.8

Q ss_pred             HHHHHHHhhcHHHHHHHhhhcHHHHHHHHHhcCCcHHHHHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCC
Q 016258          189 QAMRAFRAQNVESAKSRLSLCTEDIRDQIERMGNTSELCSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDD  268 (392)
Q Consensus       189 ~a~~a~~~g~~~~A~~~~~~c~~h~~~~l~~~~~~~~~C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~  268 (392)
                      .++..+..|++++|...|...       +...|       .+...+..+|.++...|++..|+..+..+.+.    .+..
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~a-------l~~~P-------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~   86 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAA-------VQQDP-------KHMEAWQYLGTTQAENEQELLAISALRRCLEL----KPDN   86 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH-------HHSCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHH-------HHhCC-------CCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc----cccc
Confidence            455788999999999988632       22222       23346677788887888888888888776543    3333


Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 016258          269 LEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLN  304 (392)
Q Consensus       269 ~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~  304 (392)
                      .       ..+..+|.++...|++++|+..|++++.
T Consensus        87 ~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~  115 (323)
T d1fcha_          87 Q-------TALMALAVSFTNESLQRQACEILRDWLR  115 (323)
T ss_dssp             H-------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             c-------cccccccccccccccccccccchhhHHH
Confidence            2       2456677777778888888887777665

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00028  Score=57.36  Aligned_cols=86  Identities=13%  Similarity=0.051  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258          276 SVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  355 (392)
Q Consensus       276 s~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e  355 (392)
                      +..+...|+.++..|++++|+..|++++++       .+       +.+..+.++|.++..+|++++|+..|++++++  
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~-------~p-------~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--   73 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIEL-------NP-------SNAIYYGNRSLAYLRTECYGYALGDATRAIEL--   73 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------ST-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhcccc-------ch-------hhhhhhhhhHHHHHhccccchHHHHHHHHHHH--
Confidence            456778899999999999999999999975       23       23667899999999999999999999999866  


Q ss_pred             HhhcCCCchHHHHHHHHHHHHHHHHh
Q 016258          356 SLTLKPEEAGLEQRRLSVLEFLNNQL  381 (392)
Q Consensus       356 ~l~~~p~~a~~l~~~~~~~~~l~~~~  381 (392)
                          +|.......+++.++..+|+.-
T Consensus        74 ----~p~~~~a~~~~g~~~~~~g~~~   95 (159)
T d1a17a_          74 ----DKKYIKGYYRRAASNMALGKFR   95 (159)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHH
T ss_pred             ----cccchHHHHHHHHHHHHcCCHH
Confidence                6888888888999988888643

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.58  E-value=0.00012  Score=59.69  Aligned_cols=97  Identities=9%  Similarity=0.019  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcch-----h-hHHHHHHHHHHHHHhcCCHHHHHHHH
Q 016258          274 TLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQV-----L-DVAVSLAKVADVDRSIGNEDVAVDGF  347 (392)
Q Consensus       274 ~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~-----~-dla~sl~~la~~~~~~g~~~~A~~~~  347 (392)
                      ..+..++..|+.++..|++.+|+..|.++|++....    .......     . -.+..+.++|.++..+|++++|+..|
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~----~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~   90 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT----EEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA   90 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC----TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcch----hhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhh
Confidence            344567888999999999999999999999764321    1111111     1 12345678999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          348 QEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       348 ~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                      ++++++      +|.+.....+++.++..+|+.
T Consensus        91 ~~al~~------~p~~~ka~~~~g~~~~~lg~~  117 (153)
T d2fbna1          91 SKVLKI------DKNNVKALYKLGVANMYFGFL  117 (153)
T ss_dssp             HHHHHH------STTCHHHHHHHHHHHHHHTCH
T ss_pred             hccccc------cchhhhhhHHhHHHHHHcCCH
Confidence            998754      788888899999999998864

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.58  E-value=0.00058  Score=52.21  Aligned_cols=81  Identities=9%  Similarity=-0.015  Sum_probs=69.5

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcC
Q 016258          281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLK  360 (392)
Q Consensus       281 ~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~  360 (392)
                      ++|..+...|++.+|+..|++++.+       .+.       -+..+.++|.++..+|++++|+..|++++.+      +
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~-------~p~-------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~------~   80 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQK-------EPE-------REEAWRSLGLTQAENEKDGLAIIALNHARML------D   80 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-------STT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------C
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhccc-------ccc-------cchhhhhhhhhhhhhhhHHHhhccccccccc------c
Confidence            5688899999999999999999865       232       2567889999999999999999999988765      7


Q ss_pred             CCchHHHHHHHHHHHHHHHHh
Q 016258          361 PEEAGLEQRRLSVLEFLNNQL  381 (392)
Q Consensus       361 p~~a~~l~~~~~~~~~l~~~~  381 (392)
                      |++.....+++.+|..+|+.-
T Consensus        81 p~~~~a~~~la~~y~~~g~~~  101 (112)
T d1hxia_          81 PKDIAVHAALAVSHTNEHNAN  101 (112)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHCCCHH
Confidence            899999999999999998753

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00046  Score=61.90  Aligned_cols=99  Identities=23%  Similarity=0.244  Sum_probs=78.3

Q ss_pred             HhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcC
Q 016258          234 LGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRH  313 (392)
Q Consensus       234 L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~  313 (392)
                      +..++.+....|++..|+.+++.+...    .+..       ...+..+|.++...|++++|+..|++++++       .
T Consensus       175 ~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~  236 (323)
T d1fcha_         175 QCGLGVLFNLSGEYDKAVDCFTAALSV----RPND-------YLLWNKLGATLANGNQSEEAVAAYRRALEL-------Q  236 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------C
T ss_pred             chhhHHHHHHHHHHhhhhccccccccc----cccc-------ccchhhhhhcccccccchhHHHHHHHHHHH-------h
Confidence            445667777788999999888776433    2322       246788999999999999999999999875       2


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          314 SNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       314 ~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      +.       .+..+.++|.++..+|++++|+..|++++++-..-
T Consensus       237 p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  273 (323)
T d1fcha_         237 PG-------YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  273 (323)
T ss_dssp             TT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             hc-------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC
Confidence            22       25578889999999999999999999999986653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00018  Score=60.81  Aligned_cols=115  Identities=16%  Similarity=0.093  Sum_probs=82.7

Q ss_pred             hhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016258          237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV  316 (392)
Q Consensus       237 ~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~  316 (392)
                      -|......|++..|+..|+       ++.+...       ..+.++|.++..+|++++|+..|+++|++       ++  
T Consensus        11 ~g~~~~~~~d~~~Al~~~~-------~i~~~~~-------~~~~nlG~~~~~~g~~~~A~~~~~kAl~l-------dp--   67 (192)
T d1hh8a_          11 EGVLAADKKDWKGALDAFS-------AVQDPHS-------RICFNIGCMYTILKNMTEAEKAFTRSINR-------DK--   67 (192)
T ss_dssp             HHHHHHHTTCHHHHHHHHH-------TSSSCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CT--
T ss_pred             HHHHHHHCCCHHHHHHHHH-------hcCCCCH-------HHHHHHHHHHHHcCCchhHHHHHHHHHHH-------hh--
Confidence            3555567888888877764       3444333       25779999999999999999999999975       23  


Q ss_pred             CcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh----------hcCCCchHHHHHHHHHHHHHHH
Q 016258          317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL----------TLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       317 ~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l----------~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                           ..+..+.++|.++..+|++++|+..|++++..++.-          .........+.+++.++..+++
T Consensus        68 -----~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~  135 (192)
T d1hh8a_          68 -----HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE  135 (192)
T ss_dssp             -----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC
T ss_pred             -----hhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCC
Confidence                 236678899999999999999999999999765431          0011223345566766666554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.0008  Score=51.76  Aligned_cols=83  Identities=19%  Similarity=0.246  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 016258          278 SLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL  357 (392)
Q Consensus       278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l  357 (392)
                      .+.+.|+.+...|++++|+..|.++|++       .+.       .+..+.++|.++..+|++++|+..|++++.+    
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~-------~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----   66 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKL-------DPH-------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL----   66 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCc-------chhhhhcccccccccccccccchhhhhHHHh----
Confidence            3567899999999999999999999864       333       2567889999999999999999998888854    


Q ss_pred             hcCCCchHHHHHHHHHHHHHHHH
Q 016258          358 TLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       358 ~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                        +|.+.....+++.++..+|+.
T Consensus        67 --~p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          67 --KPDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCH
T ss_pred             --ccchhhHHHHHHHHHHHccCH
Confidence              577788888999998888764

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00012  Score=66.48  Aligned_cols=114  Identities=24%  Similarity=0.263  Sum_probs=72.8

Q ss_pred             hhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCC
Q 016258          235 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHS  314 (392)
Q Consensus       235 ~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~  314 (392)
                      ..++.+....|++..|+.+++++.+    +.+...       ..+..+|.++...|++.+|+..|++++..       .+
T Consensus       241 ~~l~~~~~~~~~~~~A~~~~~~al~----~~p~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~  302 (388)
T d1w3ba_         241 GNLACVYYEQGLIDLAIDTYRRAIE----LQPHFP-------DAYCNLANALKEKGSVAEAEDCYNTALRL-------CP  302 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH----TCSSCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHH-------CT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHhhhcc-------CC
Confidence            3344555555666666666655432    222222       24556666777777777777766665432       12


Q ss_pred             CCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 016258          315 NVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNN  379 (392)
Q Consensus       315 ~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~  379 (392)
                      .       ....+..++.++..+|++++|+..|+++++      .+|+++....+++.++..+|+
T Consensus       303 ~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g~  354 (388)
T d1w3ba_         303 T-------HADSLNNLANIKREQGNIEEAVRLYRKALE------VFPEFAAAHSNLASVLQQQGK  354 (388)
T ss_dssp             T-------CHHHHHHHHHHHHTTTCHHHHHHHHHHHTT------SCTTCHHHHHHHHHHHHTTTC
T ss_pred             c-------cchhhhHHHHHHHHCCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCC
Confidence            1       234566788889999999988888887754      478888888888888877664

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.0017  Score=47.90  Aligned_cols=67  Identities=16%  Similarity=0.115  Sum_probs=54.5

Q ss_pred             hhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 016258          235 GMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNV  305 (392)
Q Consensus       235 ~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i  305 (392)
                      ..+|.+++..|++..|+..++++......-....    ......+.+||..+..+|++++|+..|+++|++
T Consensus         9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~----~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           9 FELGKVAYTEADYYHTELWMEQALRQLDEGEIST----IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS----SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccC----ccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            4567777899999999999999977665533322    234568999999999999999999999999976

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.23  E-value=0.00053  Score=52.44  Aligned_cols=90  Identities=10%  Similarity=-0.008  Sum_probs=72.3

Q ss_pred             hhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCC
Q 016258          237 LGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNV  316 (392)
Q Consensus       237 ~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~  316 (392)
                      .|......|++..|+..++++...    .+..       ..++..+|.++...|++++|+..|++++++       .+. 
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~----~p~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-------~p~-   82 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQK----EPER-------EEAWRSLGLTQAENEKDGLAIIALNHARML-------DPK-   82 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH----STTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTT-
T ss_pred             HHHHHHHHhhhHHHHHHHhhhccc----cccc-------chhhhhhhhhhhhhhhHHHhhccccccccc-------ccc-
Confidence            455666889999999998877543    3333       246788999999999999999999999876       232 


Q ss_pred             CcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          317 PSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       317 ~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                            ....+..+|.++..+|++++|++.|++.|
T Consensus        83 ------~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          83 ------DIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence                  25577889999999999999999999875

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.0065  Score=47.02  Aligned_cols=107  Identities=7%  Similarity=-0.037  Sum_probs=71.0

Q ss_pred             hhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q 016258          243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYG---GDLQAARSYYVRSLNVRRDAVKRHSNVPSQ  319 (392)
Q Consensus       243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~---g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~  319 (392)
                      .++++.+|...|+.+..    +.+...+       +..++|.++...   +++++|+..|++++.       ..+.    
T Consensus        11 ~~~~l~~Ae~~Y~~aL~----~~p~~~~-------~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~-------~~~~----   68 (122)
T d1nzna_          11 SVEDLLKFEKKFQSEKA----AGSVSKS-------TQFEYAWCLVRTRYNDDIRKGIVLLEELLP-------KGSK----   68 (122)
T ss_dssp             HHHHHHHHHHHHHHHHH----HSCCCHH-------HHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-------TSCH----
T ss_pred             CHHHHHHHHHHHHHHHh----hCCCCHH-------HHHHHHHHHHHhcchHHHHHHHHHHHHHHh-------ccCC----
Confidence            55666777777765533    3455554       445666666443   345566666666553       2221    


Q ss_pred             hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258          320 VLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       320 ~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~  378 (392)
                       .+.+..+.+||.++..+|++++|+.+|++++++      +|++...+..+..|...+.
T Consensus        69 -~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~------~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          69 -EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT------EPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHH
T ss_pred             -chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHHHc
Confidence             134567889999999999999999999998874      5887777776666665543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.0027  Score=57.54  Aligned_cols=100  Identities=10%  Similarity=-0.008  Sum_probs=49.8

Q ss_pred             HHHHHHHhhhhhhhhhhcc-hhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 016258          228 SQLGAVLGMLGDCCRAMGD-ADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR  306 (392)
Q Consensus       228 ~~h~~~L~~~c~~C~~~gd-hh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~  306 (392)
                      |.|-..+.+.+.+....+. ..+++.+++.+.+.    .+...       .+...+|.++..+|++++|+..|.+++++ 
T Consensus        74 P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~----~p~~~-------~a~~~~~~~~~~l~~~~eAl~~~~kal~~-  141 (315)
T d2h6fa1          74 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----QPKNY-------QVWHHRRVLVEWLRDPSQELEFIADILNQ-  141 (315)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHHTCCTTHHHHHHHHHHH-
T ss_pred             CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH----HHhhh-------hHHHHHhHHHHhhccHHHHHHHHhhhhhh-
Confidence            3344444455555434443 46666555544322    22222       25566666666666666666666666654 


Q ss_pred             HHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016258          307 RDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIK  352 (392)
Q Consensus       307 ~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~  352 (392)
                            .+.       -...+.++|.++..+|++++|+..|+++++
T Consensus       142 ------dp~-------n~~a~~~~~~~~~~~~~~~~Al~~~~~al~  174 (315)
T d2h6fa1         142 ------DAK-------NYHAWQHRQWVIQEFKLWDNELQYVDQLLK  174 (315)
T ss_dssp             ------CTT-------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             ------hhc-------chHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                  111       122344455555555555555555444443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.64  E-value=0.03  Score=44.23  Aligned_cols=120  Identities=9%  Similarity=0.035  Sum_probs=73.0

Q ss_pred             hcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhH
Q 016258          244 MGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDV  323 (392)
Q Consensus       244 ~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dl  323 (392)
                      ++.+.+|+..++.+    -++.+.+.++...+..++..++...    .-.++...|+++++..+.+++-.|.+       
T Consensus        10 ~~~fe~A~~~~e~a----l~~~P~~~~~~~~~g~~l~~~~~~~----~~~e~~~~~~~Ai~~~~kAl~l~P~~-------   74 (145)
T d1zu2a1          10 ILLFEQIRQDAENT----YKSNPLDADNLTRWGGVLLELSQFH----SISDAKQMIQEAITKFEEALLIDPKK-------   74 (145)
T ss_dssp             HHHHHHHHHHHHHH----HHHCTTCHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHHHHCTTC-------
T ss_pred             HccHHHHHHHHHHH----HhhCCcchHHHHHHHHHHHHhhhhh----hhhHHHHHHHHHHHHHHHHHHhcchh-------
Confidence            34445566555554    2445666655444444444333321    11233344444444444444445654       


Q ss_pred             HHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHh-hcCCCchHHHHHHHHHHHHHH
Q 016258          324 AVSLAKVADVDRSI----GNEDVAVDGFQEAIKRLESL-TLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       324 a~sl~~la~~~~~~----g~~~~A~~~~~eal~i~e~l-~~~p~~a~~l~~~~~~~~~l~  378 (392)
                      +..+.++|.++..+    ++...+...|++|+..+++. ..+|.+..+...++.....++
T Consensus        75 ~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~  134 (145)
T d1zu2a1          75 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQ  134 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHH
T ss_pred             hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHH
Confidence            44667777777665    45678888899999999987 889999999998888765543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.0052  Score=55.54  Aligned_cols=121  Identities=9%  Similarity=0.046  Sum_probs=86.6

Q ss_pred             HHHHHHHHhhhhhhhhhhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHH
Q 016258          227 CSQLGAVLGMLGDCCRAMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGG-DLQAARSYYVRSLNV  305 (392)
Q Consensus       227 C~~h~~~L~~~c~~C~~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g-~l~~A~~~ye~sL~i  305 (392)
                      .|........++.+....+.+.+|+.+++.+.+.    .+...       .+.++.|.+....| ++++|+..|++++++
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l----nP~~~-------~a~~~r~~~l~~l~~~~~eal~~~~~al~~  107 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL----NAANY-------TVWHFRRVLLKSLQKDLHEEMNYITAIIEE  107 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH----CTTCH-------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH----CCCCh-------HHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence            4566667777887775566679999888777543    44443       36788898888876 699999999998866


Q ss_pred             HHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258          306 RRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       306 ~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~  378 (392)
                             .+.       -...+.++|.++..+|++++|++.|++++++      +|.+.....+++.++..++
T Consensus       108 -------~p~-------~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~------dp~n~~a~~~~~~~~~~~~  160 (315)
T d2h6fa1         108 -------QPK-------NYQVWHHRRVLVEWLRDPSQELEFIADILNQ------DAKNYHAWQHRQWVIQEFK  160 (315)
T ss_dssp             -------CTT-------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHT
T ss_pred             -------HHh-------hhhHHHHHhHHHHhhccHHHHHHHHhhhhhh------hhcchHHHHHHHHHHHHHH
Confidence                   232       2557888999999999999999988888764      4555555555555554444

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.012  Score=56.73  Aligned_cols=84  Identities=17%  Similarity=0.159  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 016258          275 LSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRL  354 (392)
Q Consensus       275 ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~  354 (392)
                      ....+.++|+++...|++++|+.+|.+++++       .|       +.+..+++||.++..+|++.+|+.+|.+|+.  
T Consensus       151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l-------~P-------~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~--  214 (497)
T d1ya0a1         151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQL-------VP-------SNGQPYNQLAILASSKGDHLTTIFYYCRSIA--  214 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CT-------TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS--
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-------CC-------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--
Confidence            3457889999999999999999999999976       23       3466889999999999999999999999974  


Q ss_pred             HHhhcCCCchHHHHHHHHHHHHHH
Q 016258          355 ESLTLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       355 e~l~~~p~~a~~l~~~~~~~~~l~  378 (392)
                          ..|+-.....+++.++....
T Consensus       215 ----~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         215 ----VKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             ----SSBCCHHHHHHHHHHHHHHT
T ss_pred             ----CCCCCHHHHHHHHHHHHHhh
Confidence                33444555666666665443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.016  Score=55.63  Aligned_cols=83  Identities=13%  Similarity=0.068  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 016258          277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLES  356 (392)
Q Consensus       277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~  356 (392)
                      ....++|.++...|+..+|...|.+++..                +....+.++|+++..+|++++|+.+|++|+.+   
T Consensus       121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------------~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l---  181 (497)
T d1ya0a1         121 VKSSQLGIISNKQTHTSAIVKPQSSSCSY----------------ICQHCLVHLGDIARYRNQTSQAESYYRHAAQL---  181 (497)
T ss_dssp             ----------------------CCHHHHH----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HHHHHhHHHHHhCCCHHHHHHHHHHHhCC----------------CHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---
Confidence            34567777777777777777777777643                22346778999999999999999999999876   


Q ss_pred             hhcCCCchHHHHHHHHHHHHHHHHh
Q 016258          357 LTLKPEEAGLEQRRLSVLEFLNNQL  381 (392)
Q Consensus       357 l~~~p~~a~~l~~~~~~~~~l~~~~  381 (392)
                         .|+++..-.++|.++...|+..
T Consensus       182 ---~P~~~~~~~~Lg~~~~~~~~~~  203 (497)
T d1ya0a1         182 ---VPSNGQPYNQLAILASSKGDHL  203 (497)
T ss_dssp             ---CTTBSHHHHHHHHHHHHTTCHH
T ss_pred             ---CCCchHHHHHHHHHHHHcCCHH
Confidence               6888888899999988777654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.27  E-value=0.052  Score=42.74  Aligned_cols=76  Identities=14%  Similarity=0.045  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHh-hcCCCchHHHHHHHHH
Q 016258          298 YYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNE---DVAVDGFQEAIKRLESL-TLKPEEAGLEQRRLSV  373 (392)
Q Consensus       298 ~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~---~~A~~~~~eal~i~e~l-~~~p~~a~~l~~~~~~  373 (392)
                      .|++++...+.+++..|.+       +..+.++|.++..++++   .++...|++|+..+++. +.+|+.+....+++.+
T Consensus        12 ~fe~A~~~~e~al~~~P~~-------~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1          12 LFEQIRQDAENTYKSNPLD-------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCCcc-------hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence            3445555555555667765       44555666655544433   23445566666666665 6689999999999999


Q ss_pred             HHHHHHH
Q 016258          374 LEFLNNQ  380 (392)
Q Consensus       374 ~~~l~~~  380 (392)
                      |..+|..
T Consensus        85 y~~~g~~   91 (145)
T d1zu2a1          85 YTSFAFL   91 (145)
T ss_dssp             HHHHHHH
T ss_pred             HHHcccc
Confidence            9888754

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.80  E-value=0.12  Score=42.30  Aligned_cols=77  Identities=9%  Similarity=0.048  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016258          272 IHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAI  351 (392)
Q Consensus       272 ~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal  351 (392)
                      .........+++.++...|++++|+..+++.+++       .+.+       ......++.++..+|++.+|+..|++..
T Consensus        63 ~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~-------~P~~-------e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          63 VEDKVLAHTAKAEAEIACGRASAVIAELEALTFE-------HPYR-------EPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTC-------HHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh-------CCcc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3444567788999999999999999999998864       2321       2356789999999999999999999999


Q ss_pred             HHHHH-hhcCCC
Q 016258          352 KRLES-LTLKPE  362 (392)
Q Consensus       352 ~i~e~-l~~~p~  362 (392)
                      ..+.. +..+|.
T Consensus       129 ~~L~~eLG~~P~  140 (179)
T d2ff4a2         129 TTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHSCCCC
T ss_pred             HHHHHHhCCCcC
Confidence            98865 555665

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.64  E-value=0.048  Score=44.81  Aligned_cols=96  Identities=14%  Similarity=0.093  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchh--------hHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016258          277 VSLNKIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVL--------DVAVSLAKVADVDRSIGNEDVAVDGFQ  348 (392)
Q Consensus       277 ~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~--------dla~sl~~la~~~~~~g~~~~A~~~~~  348 (392)
                      ..+.+.|......|++++|+..|.++|.+.+.-.-.......+..        .....+.+++.++..+|++++|+..++
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~   91 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE   91 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            456778888889999999999999999875421111111112221        233456778999999999999998877


Q ss_pred             HHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 016258          349 EAIKRLESLTLKPEEAGLEQRRLSVLEFLN  378 (392)
Q Consensus       349 eal~i~e~l~~~p~~a~~l~~~~~~~~~l~  378 (392)
                      +++.      .+|.+...-+++..++..+|
T Consensus        92 ~al~------~~P~~e~~~~~l~~al~~~G  115 (179)
T d2ff4a2          92 ALTF------EHPYREPLWTQLITAYYLSD  115 (179)
T ss_dssp             HHHH------HSTTCHHHHHHHHHHHHTTT
T ss_pred             HHHH------hCCccHHHHHHHHHHHHHhc
Confidence            7765      35665555555555444443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.58  E-value=0.23  Score=37.69  Aligned_cols=82  Identities=13%  Similarity=-0.082  Sum_probs=51.6

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hc
Q 016258          281 KIGDLKYYGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TL  359 (392)
Q Consensus       281 ~lg~l~~~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~  359 (392)
                      +|.+.....+++++|...|+++|.+       .+..       ...+.++|.++...++..    -+++|+.+++++ ..
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~-------~p~~-------~~~~~n~a~~L~~s~~~~----d~~~Ai~~l~~~l~~   65 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAA-------GSVS-------KSTQFEYAWCLVRTRYND----DIRKGIVLLEELLPK   65 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-------SCCC-------HHHHHHHHHHHTTSSSHH----HHHHHHHHHHHHTTT
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhh-------CCCC-------HHHHHHHHHHHHHhcchH----HHHHHHHHHHHHHhc
Confidence            4444555667888888888887754       3433       345566777776544443    245566666666 44


Q ss_pred             CCCc--hHHHHHHHHHHHHHHHH
Q 016258          360 KPEE--AGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       360 ~p~~--a~~l~~~~~~~~~l~~~  380 (392)
                      +|..  +..+.++|.+|..+|+.
T Consensus        66 ~~~~~~~~~~~~Lg~~y~~~g~~   88 (122)
T d1nzna_          66 GSKEEQRDYVFYLAVGNYRLKEY   88 (122)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCchHHHHHHHHHHHHHHHhhh
Confidence            4433  45678899998888764

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=91.78  E-value=0.54  Score=40.67  Aligned_cols=73  Identities=15%  Similarity=0.101  Sum_probs=53.9

Q ss_pred             hccCHHHHHHHHHHHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHH
Q 016258          288 YGGDLQAARSYYVRSLNVRRDAVKRHSNVPSQVLDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLE  367 (392)
Q Consensus       288 ~~g~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l  367 (392)
                      ..|++++|+..|+++|+       ..|.+       +.....++.++...|++++|+..|++++++      +|+.....
T Consensus         8 ~~G~l~eAl~~l~~al~-------~~P~d-------~~ar~~La~lL~~~G~~e~A~~~l~~a~~l------~P~~~~~~   67 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIK-------ASPKD-------ASLRSSFIELLCIDGDFERADEQLMQSIKL------FPEYLPGA   67 (264)
T ss_dssp             TTTCHHHHHHHHHHHHH-------TCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CGGGHHHH
T ss_pred             HCCCHHHHHHHHHHHHH-------HCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCcHHHH
Confidence            35888888888888763       34543       556778999999999999999998888754      67767766


Q ss_pred             HHHHHHHHHHHHH
Q 016258          368 QRRLSVLEFLNNQ  380 (392)
Q Consensus       368 ~~~~~~~~~l~~~  380 (392)
                      ..++.++...+..
T Consensus        68 ~~l~~ll~a~~~~   80 (264)
T d1zbpa1          68 SQLRHLVKAAQAR   80 (264)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccc
Confidence            6666666544443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.69  E-value=0.95  Score=39.55  Aligned_cols=108  Identities=9%  Similarity=-0.065  Sum_probs=72.0

Q ss_pred             hhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHHhhcCCCCCcch
Q 016258          243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGG--DLQAARSYYVRSLNVRRDAVKRHSNVPSQV  320 (392)
Q Consensus       243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g--~l~~A~~~ye~sL~i~~~~~~~~~~~~~~~  320 (392)
                      ..+.+..++.+++....    ..++..       .....+|.+....+  ++++|+..+++++++       .+..    
T Consensus        85 ~~~~~~~al~~~~~~l~----~~pk~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-------~~~~----  142 (334)
T d1dcea1          85 SAALVKAELGFLESCLR----VNPKSY-------GTWHHRCWLLSRLPEPNWARELELCARFLEA-------DERN----  142 (334)
T ss_dssp             HHHHHHHHHHHHHHHHH----HCTTCH-------HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH-------CTTC----
T ss_pred             HHHHHHHHHHHHHHHHH----hCCCcH-------HHHHHhhHHHHHhccccHHHHHHHHHHHHhh-------Cchh----
Confidence            34444556666555432    233333       24566777776765  588999999988876       2221    


Q ss_pred             hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q 016258          321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLEFLNNQ  380 (392)
Q Consensus       321 ~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~~l~~~  380 (392)
                        .......++.++...+.++.|+..|++++      ..+|.+.....+++.++..+|+.
T Consensus       143 --~~~~~~~~~~~~~~~~~~~~Al~~~~~~i------~~~p~~~~a~~~l~~~~~~~~~~  194 (334)
T d1dcea1         143 --FHCWDYRRFVAAQAAVAPAEELAFTDSLI------TRNFSNYSSWHYRSCLLPQLHPQ  194 (334)
T ss_dssp             --HHHHHHHHHHHHHTCCCHHHHHHHHHTTT------TTTCCCHHHHHHHHHHHHHHSCC
T ss_pred             --hhhhhhHHHHHHHhccccHHHHHHHHHHH------HcCCCCHHHHHHHHHHHHHhcCH
Confidence              12234567788888999888887766553      56899999999999999888764

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.26  E-value=1.2  Score=31.82  Aligned_cols=42  Identities=24%  Similarity=0.096  Sum_probs=33.8

Q ss_pred             hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hcCCC
Q 016258          321 LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESL-TLKPE  362 (392)
Q Consensus       321 ~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l-~~~p~  362 (392)
                      ..-|..+-+.|.-....|+|++|+.+|.+++++|..+ ...++
T Consensus        12 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~e~~   54 (93)
T d1wfda_          12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKE   54 (93)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCC
Confidence            3456667777777888899999999999999999998 44444

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.87  E-value=0.62  Score=40.84  Aligned_cols=48  Identities=10%  Similarity=-0.024  Sum_probs=40.5

Q ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 016258          322 DVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQRRLSVLE  375 (392)
Q Consensus       322 dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~~~~~~~~  375 (392)
                      +.+..+..+|.++..+|++++|+.+|++++++      +|..+.+.+.++..+.
T Consensus       274 ~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l------dP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         274 WCLLTIILLMRALDPLLYEKETLQYFSTLKAV------DPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH------CGGGHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CcccHHHHHHHHHHHh
Confidence            45667888999999999999999999998765      7888888888877765

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=87.49  E-value=2.5  Score=36.12  Aligned_cols=102  Identities=12%  Similarity=0.105  Sum_probs=65.5

Q ss_pred             hhcchhHHHhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH----------HHHh--
Q 016258          243 AMGDADAAVAYFADSVEFLMKLPMDDLEIIHTLSVSLNKIGDLKYYGGDLQAARSYYVRSLNVR----------RDAV--  310 (392)
Q Consensus       243 ~~gdhh~a~~~~e~~~~~~~~L~~~~~e~~~~ls~~~~~lg~l~~~~g~l~~A~~~ye~sL~i~----------~~~~--  310 (392)
                      ..|++.+|+..+++.    -++.+.+.+       ....++.++...|++++|+..|++++++.          ..+.  
T Consensus         8 ~~G~l~eAl~~l~~a----l~~~P~d~~-------ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a   76 (264)
T d1zbpa1           8 SEGQLQQALELLIEA----IKASPKDAS-------LRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA   76 (264)
T ss_dssp             TTTCHHHHHHHHHHH----HHTCTTCHH-------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHH----HHHCCCCHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            457777887777654    334555554       46788889999999999999999988732          1100  


Q ss_pred             ----h---cCCCCCcch--hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 016258          311 ----K---RHSNVPSQV--LDVAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLE  355 (392)
Q Consensus       311 ----~---~~~~~~~~~--~dla~sl~~la~~~~~~g~~~~A~~~~~eal~i~e  355 (392)
                          .   .........  .+-...+...+.+....|++++|.+.+++++++.-
T Consensus        77 ~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p  130 (264)
T d1zbpa1          77 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ  130 (264)
T ss_dssp             HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             ccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence                0   011111111  23333455567888888999999999888776543

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.90  E-value=0.0063  Score=40.81  Aligned_cols=35  Identities=14%  Similarity=0.274  Sum_probs=28.9

Q ss_pred             HHHHHHHHHhhhhh--------hhhhhcch--hHHHhHHHHHHHHH
Q 016258          226 LCSQLGAVLGMLGD--------CCRAMGDA--DAAVAYFADSVEFL  261 (392)
Q Consensus       226 ~C~~h~~~L~~~c~--------~C~~~gdh--h~a~~~~e~~~~~~  261 (392)
                      .|+.|++.|.+||.        .| ..++|  |.++++.+++.+.+
T Consensus        13 ~C~~H~e~l~lyC~~c~~~iC~~C-~~~~H~~H~~~~l~~a~~~~k   57 (59)
T d2csva1          13 KCPVHGKTMELFCQTDQTCICYLC-MFQEHKNHSTVTVEEAKAEKE   57 (59)
T ss_dssp             BCTTTCCBCCEEESSSCCEECHHH-HHTTTSSSCEEEHHHHHHHHS
T ss_pred             chhhhCCccceECCCCCceECccc-CcccCCCCCeeCHHHHHHHHh
Confidence            79999999999994        78 67888  99999988776543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.97  E-value=1.1  Score=34.08  Aligned_cols=40  Identities=8%  Similarity=-0.032  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcCCCchHHHH
Q 016258          323 VAVSLAKVADVDRSIGNEDVAVDGFQEAIKRLESLTLKPEEAGLEQ  368 (392)
Q Consensus       323 la~sl~~la~~~~~~g~~~~A~~~~~eal~i~e~l~~~p~~a~~l~  368 (392)
                      ..+.|-.||..+..+|+|++|..+++.+|++      +|++.-.+.
T Consensus        72 ~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i------eP~n~qA~~  111 (124)
T d2pqrb1          72 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEH------ERNNKQVGA  111 (124)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc------CCCcHHHHH
Confidence            3567888999999999999999888777654      566544433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=80.65  E-value=2.6  Score=35.07  Aligned_cols=27  Identities=22%  Similarity=0.482  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHH
Q 016258          278 SLNKIGDLKYYGGDLQAARSYYVRSLN  304 (392)
Q Consensus       278 ~~~~lg~l~~~~g~l~~A~~~ye~sL~  304 (392)
                      ++-+||.+.+..+++++|+.+|+++.+
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~   30 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACD   30 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            577899999999999999999999865