Citrus Sinensis ID: 016309

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
MAVVMAIRSSATAKLSVPASPSVASAPKSYSSKAQLKPNSVLLPTSTSFSLLALFNAPNEVKALTLDKDQIVSSLNEVEKTIDQVQEAGSSFLETTQKVLDAVGSALKPAVDAALPIVKQAGEEALKIASPAISDATKKAQEAIQSTGVDTEKVATAAKTVADAAQQISKVIGEAKPIAASTVETISSGDPVVIVGTAGALFIAYLLLPPIWSVISFSLRGYKGELTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTEVLSPSRVIPAAARRFGTTSTKFLPSSD
cHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHccccccccccHHHHHHHHHccccEEEEccccHHHHHcccccccccccccEEEEccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHcccccEEEccccccccHHHHHccccccccccccccccccccccHHHHHcccccccccccccc
cHHHHHHHHHcccccccccccccccccccccccccccccEEEccccHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccEEEEEEccHHHHHHcccccccHHccccEEEEccHHcccHHHHHHcccccHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHcccccEEEEEccccccccHHHcccccccccEEEEEEcccccEccHHHHHccccccccccccc
MAVVMAIRSSAtaklsvpaspsvasapksysskaqlkpnsvllptstsFSLLALfnapnevkaltldKDQIVSSLNEVEKTIDQVQEAGSSFLETTQKVLDAVGSALKPAVDAALPIVKQAGEEALKIASPAISDATKKAQEAIQSTGVDTEKVATAAKTVADAAQQISKVIGEakpiaastvetissgdpvvIVGTAGALFIAYLllppiwsvisfslrgykgeltpaqSLDLITAQNHLMIDirsekdkdkagiprlppsaknrmvsipleelpskLKGLVRNAKKVEAEIVALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTSlgfkncwivadgfsgrrgwlqsrlgsdsynfsftevlspsrvipaaarrfgttstkflpssd
MAVVMAIRSsataklsvpaspsvasapksysskaqLKPNSVLLPTSTSFSLLALFNAPNEVKALTLDKDQIVSSLNEVEKTIDQVQEAGSSFLETTQKVLDAVGSALKPAVDAALPIVKQAGEEALKIASPAISDATKKAQEAIQSTGVDTEKVATAAKTVADAAQQISKVIGEAKPIAAStvetissgdPVVIVGTAGALFIAYLLLPPIWSVISFSLRGYKGELTPAQSLDLITAQNHLMIDirsekdkdkagiprlppsaknrmvsipleelpsklkGLVRNAKKVEAEIVALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTevlspsrvipaaarrfgttstkflpssd
MAVVMAIRSSATaklsvpaspsvasapksysskaQLKPNSVLLPTSTSFSLLALFNAPNEVKALTLDKDQIVSSLNEVEKTIDQVQEAGSSFLETTQKVLDAVGSALKPAVDAALPIVKQAGEEALKIASPAISDATKKAQEAIQSTGvdtekvataaktvadaaQQISKVIGEAKPIAASTVETISSGDPVVIVGTAGALFIAYLLLPPIWSVISFSLRGYKGELTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTEVLSPSRVIPAAARRFGTTSTKFLPSSD
******************************************LPTSTSFSLLALFNAPNEVKALTLDKDQIVSSLNEVEKTI*********FLETTQKVLDAVGSALKPAVDAALPIVKQ*******************************************AAQQISKVIGEAKPIAASTVETISSGDPVVIVGTAGALFIAYLLLPPIWSVISFSLRGYKGELTPAQSLDLITAQNHLMIDI**********************************KGLVRNAKKVEAEIVALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTEVLSPSRVIPAA****************
***********************************************SFSLLALFN*************QIVSSLNEVEKT****************KVLDAVGSALKPAVDAALPIVKQAGEEALKIASPA********************KVATAAKTVADAAQQISKVIGEAKPIAASTVETISSGDPVVIVGTAGALFIAYLLLPPIWSVISFSLRGYKGELTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTEVLSPSRVIPA*****************
***********************************LKPNSVLLPTSTSFSLLALFNAPNEVKALTLDKDQIVSSLNEVEKTIDQVQEAGSSFLETTQKVLDAVGSALKPAVDAALPIVKQAGEEALKIASPAIS******************KVATAAKTVADAAQQISKVIGEAKPIAASTVETISSGDPVVIVGTAGALFIAYLLLPPIWSVISFSLRGYKGELTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTEVLSPSRVIPAAARRFGTT*********
***********************************LKPNSVLLPTSTSFSLLALFNAPNEVKALTLDKDQIVSSLNEVEKTIDQVQEAGSSFLETTQKVLDAVGSALKPAVDAALPIVKQAGEEALKIASPAISDATKKAQEAIQSTGVDTEKVATAAKTVADAAQQISKVIGEAKPIAASTVETISSGDPVVIVGTAGALFIAYLLLPPIWSVISFSLRGYKGELTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTEVLSPSRVIPAAARRFGT**********
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAVVMAIRSSATAKLSVPASPSVASAPKSYSSKAQLKPNSVLLPTSTSFSLLALFNAPNEVKALTLDxxxxxxxxxxxxxxxxxxxxxGSSFLETTQKVLDAVGSALKPAVDAALPIVKQAGEEALKIASPAISDATKKAQEAIQSTGVDTEKVATAAKTVADAAQQISKVIGEAKPIAASTVETISSGDPVVIVGTAGALFIAYLLLPPIWSVISFSLRGYKGELTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKxxxxxxxxxxxxxxxxxxxxxYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSFTEVLSPSRVIPAAARRFGTTSTKFLPSSD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query391 2.2.26 [Sep-21-2011]
Q9FN48387 Calcium sensing receptor, yes no 0.969 0.979 0.689 1e-150
Q9M158 466 Rhodanese-like domain-con no no 0.386 0.324 0.257 2e-05
Q9ZCV8123 Uncharacterized protein R yes no 0.260 0.829 0.260 0.0003
Q9AKI4123 Uncharacterized protein R yes no 0.260 0.829 0.260 0.0009
>sp|Q9FN48|CAS_ARATH Calcium sensing receptor, chloroplastic OS=Arabidopsis thaliana GN=CAS PE=1 SV=1 Back     alignment and function desciption
 Score =  530 bits (1366), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 269/390 (68%), Positives = 326/390 (83%), Gaps = 11/390 (2%)

Query: 5   MAIRSSATAKLSVPASPSVASAPKSYSSKAQLKPNSVLLPTSTSFSLLALF-NAPNEVKA 63
           MA +SS +AKL++P+S    S  K+ S    L+  SV LPTSTS SLL+LF + P+E KA
Sbjct: 6   MATKSSLSAKLTLPSS----STKKTLS----LRQVSVSLPTSTSISLLSLFASPPHEAKA 57

Query: 64  -LTLDKDQIVSSLNEVEKTIDQVQEAGSSFLETTQKVLDAVGSALKPAVDAALPIVKQAG 122
            +++ KDQIVSSL EVEKTI+QVQE GSS  + TQ+V   VG ALKPA+D ALPI KQAG
Sbjct: 58  AVSIPKDQIVSSLTEVEKTINQVQETGSSVFDATQRVFQVVGDALKPALDTALPIAKQAG 117

Query: 123 EEALKIASPAISDATKKAQEAIQSTGVDTEKVATAAKTVADAAQQISKVIGEAKPIAAST 182
           EEA+K+ASPA S+A+KKAQEA+QS+G D+E V  AAKTV D AQQ SK I +AKPIA+ST
Sbjct: 118 EEAMKLASPAFSEASKKAQEAMQSSGFDSEPVFNAAKTVTDVAQQTSKAIEDAKPIASST 177

Query: 183 VETISSGDPVVIVGTAGALFIAYLLLPPIWSVISFSLRGYKGELTPAQSLDLITAQNHLM 242
           ++TISS DP VIV  AGA F+AYLLLPP++S ISF+ RGYKG+LTPAQ+LDL+  +N+LM
Sbjct: 178 MDTISSADPSVIVVAAGAAFLAYLLLPPVFSAISFNFRGYKGDLTPAQTLDLLCTKNYLM 237

Query: 243 IDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLK 302
           +DIRSEKDK+KAGIPRLP +AKNR++SIPLEELP+K+KG+VRN+K+VEAEI ALKISYLK
Sbjct: 238 VDIRSEKDKEKAGIPRLPSNAKNRVISIPLEELPNKVKGIVRNSKRVEAEIAALKISYLK 297

Query: 303 RINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNFSF 362
           +INKGS III+DSY+DSAKIVA+ L  LG+KNC+IV DGFSG RGWLQSRLG+DSYNFSF
Sbjct: 298 KINKGSNIIILDSYTDSAKIVAKTLKVLGYKNCYIVTDGFSGGRGWLQSRLGTDSYNFSF 357

Query: 363 TEVLSPSRVIPAAARRFGTTS-TKFLPSSD 391
            +VLSPSR+IPAA+R FGT S TKFLPSSD
Sbjct: 358 AQVLSPSRIIPAASRSFGTRSGTKFLPSSD 387
Modulates cytoplasmic Ca(2+) concentration and is crucial for proper stomatal regulation in response to elevated levels of external Ca(2+). May function by regulating concentrations of inositol 1,4,5-trisphosphate (IP3), which in turn triggers release of Ca(2+) from internal stores. May play a role in de-etiolation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9M158|STR4_ARATH Rhodanese-like domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana GN=STR4 PE=1 SV=2 Back     alignment and function description
>sp|Q9ZCV8|Y600_RICPR Uncharacterized protein RP600 OS=Rickettsia prowazekii (strain Madrid E) GN=RP600 PE=4 SV=1 Back     alignment and function description
>sp|Q9AKI4|Y600_RICRI Uncharacterized protein RP600 homolog OS=Rickettsia rickettsii PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query391
347596003393 extracellular calcium sensing receptor [ 0.997 0.992 0.733 1e-162
255367590394 extracellular calcium sensing receptor [ 0.936 0.928 0.756 1e-159
255541882400 conserved hypothetical protein [Ricinus 0.913 0.892 0.757 1e-156
375313028397 extracellular calcium sensing receptor [ 0.987 0.972 0.712 1e-154
358248568397 calcium sensing receptor, chloroplastic- 0.989 0.974 0.694 1e-151
164459312398 extracellular Ca2+ sensing receptor [Gly 0.987 0.969 0.693 1e-151
356511586396 PREDICTED: calcium sensing receptor, chl 0.987 0.974 0.694 1e-151
312281671390 unnamed protein product [Thellungiella h 0.976 0.979 0.702 1e-151
297812453385 hypothetical protein ARALYDRAFT_489159 [ 0.964 0.979 0.692 1e-151
297734140 965 unnamed protein product [Vitis vinifera] 0.994 0.403 0.669 1e-149
>gi|347596003|gb|AEP13979.1| extracellular calcium sensing receptor [Castanopsis chinensis] Back     alignment and taxonomy information
 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 289/394 (73%), Positives = 342/394 (86%), Gaps = 4/394 (1%)

Query: 1   MAVVMAIRSSATAKLSVPASPSVASAPKSYSSKAQLKPNSVLLPTSTSFSLLALFNAPNE 60
           MA+ +AIR+SAT +LS P   S++S P++ SS+ Q +P SV LPTST  SLLALF AP+E
Sbjct: 1   MAMELAIRASATPRLSRPTISSLSSTPRA-SSRPQFRPTSVSLPTSTPISLLALFTAPHE 59

Query: 61  VKALTLDKDQIVSSLNEVEKTIDQVQEAGSSFLETTQKVLDAVGSALKPAVDAALPIVKQ 120
            KAL+L KDQIVSS+ E EK IDQVQE GSSF +TT++VL+ VG+ LKP ++AA+PIVKQ
Sbjct: 60  AKALSLSKDQIVSSITEAEKAIDQVQEVGSSFFDTTKRVLEGVGNVLKPGIEAAVPIVKQ 119

Query: 121 AGEEALKIASPAISDATKKAQEAIQSTGVDTEKVATAAKTVADAAQQISKVIGEAKPIAA 180
            GE+ALKIASPAIS+A+KKAQEAI+STG DT+ V +AAKTV DAAQ+ +KVI EA+PIA+
Sbjct: 120 TGEQALKIASPAISEASKKAQEAIESTGFDTQPVLSAAKTVTDAAQKTTKVIEEARPIAS 179

Query: 181 STVETISSGDPVVIVGTAGALFIAYLLLPPIWSVISFSLRGYKGELTPAQSLDLITAQNH 240
           ST++TISS DP+VIVGTAGALF+ YLLLPPIWS IS++LRGYKGELTPAQ+LDLI+ +NH
Sbjct: 180 STIDTISSSDPIVIVGTAGALFLVYLLLPPIWSAISYNLRGYKGELTPAQTLDLISTKNH 239

Query: 241 LMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISY 300
           LMIDIRSEKDKDK GIPRLP SAKNRM++IPLEELPSKLKGLVRNAKKVEAEI ALKISY
Sbjct: 240 LMIDIRSEKDKDKTGIPRLPSSAKNRMIAIPLEELPSKLKGLVRNAKKVEAEIAALKISY 299

Query: 301 LKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDSYNF 360
           LK+INKGS I+IMDSYSDSAK+VAR LT+LGFKNCW V DGFSG RGWLQSRLG+D+YNF
Sbjct: 300 LKKINKGSNIVIMDSYSDSAKLVARALTNLGFKNCWTVVDGFSGSRGWLQSRLGTDTYNF 359

Query: 361 SFTEVLSPSRVIPAAARRFGTTST---KFLPSSD 391
           SF EV+SPSR+IPAA RRFGT S+   K LP ++
Sbjct: 360 SFAEVISPSRIIPAAVRRFGTISSSGQKLLPGAE 393

Source: Castanopsis chinensis

Species: Castanopsis chinensis

Genus: Castanopsis

Family: Fagaceae

Order: Fagales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255367590|gb|ACU11587.1| extracellular calcium sensing receptor [Liquidambar formosana] Back     alignment and taxonomy information
>gi|255541882|ref|XP_002512005.1| conserved hypothetical protein [Ricinus communis] gi|223549185|gb|EEF50674.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|375313028|gb|AFA51419.1| extracellular calcium sensing receptor [Schima superba] Back     alignment and taxonomy information
>gi|358248568|ref|NP_001239903.1| calcium sensing receptor, chloroplastic-like [Glycine max] gi|255639859|gb|ACU20222.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|164459312|gb|ABY57763.1| extracellular Ca2+ sensing receptor [Glycine max] Back     alignment and taxonomy information
>gi|356511586|ref|XP_003524505.1| PREDICTED: calcium sensing receptor, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|312281671|dbj|BAJ33701.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|297812453|ref|XP_002874110.1| hypothetical protein ARALYDRAFT_489159 [Arabidopsis lyrata subsp. lyrata] gi|297319947|gb|EFH50369.1| hypothetical protein ARALYDRAFT_489159 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297734140|emb|CBI15387.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query391
TAIR|locus:2178287387 CaS "calcium sensing receptor" 0.910 0.919 0.688 4.3e-125
TAIR|locus:2124998 466 TROL "thylakoid rhodanese-like 0.386 0.324 0.244 0.00067
TAIR|locus:2178287 CaS "calcium sensing receptor" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1229 (437.7 bits), Expect = 4.3e-125, P = 4.3e-125
 Identities = 247/359 (68%), Positives = 297/359 (82%)

Query:    36 LKPNSVLLPTSTSFSLLALF-NAPNEVKA-LTLDKDQIVSSLNEVEKTIDQVQEAGSSFL 93
             L+  SV LPTSTS SLL+LF + P+E KA +++ KDQIVSSL EVEKTI+QVQE GSS  
Sbjct:    29 LRQVSVSLPTSTSISLLSLFASPPHEAKAAVSIPKDQIVSSLTEVEKTINQVQETGSSVF 88

Query:    94 ETTQKVLDAVGSALKPAVDAALPIVKQAGEEALKIASPAISDATKKAQEAIQSTGXXXXX 153
             + TQ+V   VG ALKPA+D ALPI KQAGEEA+K+ASPA S+A+KKAQEA+QS+G     
Sbjct:    89 DATQRVFQVVGDALKPALDTALPIAKQAGEEAMKLASPAFSEASKKAQEAMQSSGFDSEP 148

Query:   154 XXXXXXXXXXXXQQISKVIGEAKPIAASTVETISSGDPVVIVGTAGALFIAYLLLPPIWS 213
                         QQ SK I +AKPIA+ST++TISS DP VIV  AGA F+AYLLLPP++S
Sbjct:   149 VFNAAKTVTDVAQQTSKAIEDAKPIASSTMDTISSADPSVIVVAAGAAFLAYLLLPPVFS 208

Query:   214 VISFSLRGYKGELTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLE 273
              ISF+ RGYKG+LTPAQ+LDL+  +N+LM+DIRSEKDK+KAGIPRLP +AKNR++SIPLE
Sbjct:   209 AISFNFRGYKGDLTPAQTLDLLCTKNYLMVDIRSEKDKEKAGIPRLPSNAKNRVISIPLE 268

Query:   274 ELPSKLKGLVRNAKKVEAEIVALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFK 333
             ELP+K+KG+VRN+K+VEAEI ALKISYLK+INKGS III+DSY+DSAKIVA+ L  LG+K
Sbjct:   269 ELPNKVKGIVRNSKRVEAEIAALKISYLKKINKGSNIIILDSYTDSAKIVAKTLKVLGYK 328

Query:   334 NCWIVADGFSGRRGWLQSRLGSDSYNFSFTEVLSPSRVIPAAARRFGTTS-TKFLPSSD 391
             NC+IV DGFSG RGWLQSRLG+DSYNFSF +VLSPSR+IPAA+R FGT S TKFLPSSD
Sbjct:   329 NCYIVTDGFSGGRGWLQSRLGTDSYNFSFAQVLSPSRIIPAASRSFGTRSGTKFLPSSD 387
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0071277 "cellular response to calcium ion" evidence=IMP
GO:0090333 "regulation of stomatal closure" evidence=IMP
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0009704 "de-etiolation" evidence=IMP
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006364 "rRNA processing" evidence=RCA
GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA
GO:0009416 "response to light stimulus" evidence=RCA
GO:0009637 "response to blue light" evidence=RCA
GO:0009657 "plastid organization" evidence=RCA
GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA
GO:0010114 "response to red light" evidence=RCA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0010218 "response to far red light" evidence=RCA
GO:0015979 "photosynthesis" evidence=RCA
GO:0015994 "chlorophyll metabolic process" evidence=RCA
GO:0019216 "regulation of lipid metabolic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0019684 "photosynthesis, light reaction" evidence=RCA
GO:0031408 "oxylipin biosynthetic process" evidence=RCA
GO:0043085 "positive regulation of catalytic activity" evidence=RCA
TAIR|locus:2124998 TROL "thylakoid rhodanese-like" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FN48CAS_ARATHNo assigned EC number0.68970.96930.9793yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.6__2293__AT5G23060.1
annotation not avaliable (385 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
fgenesh2_kg.1__4294__AT1G52230.1
annotation not avaliable (145 aa)
   •    0.510
fgenesh1_pg.C_scaffold_2001846
annotation not avaliable (150 aa)
   •  • 0.498
scaffold_604018.1
annotation not avaliable (215 aa)
   •    0.496
fgenesh2_kg.5__2683__AT3G61870.1
annotation not avaliable (271 aa)
   •    0.488
scaffold_105337.1
annotation not avaliable (335 aa)
   •  • 0.487
scaffold_502717.1
annotation not avaliable (393 aa)
   •    0.481
scaffold_104192.1
annotation not avaliable (265 aa)
   •    0.480
fgenesh2_kg.1__3345__AT1G32080.1
annotation not avaliable (506 aa)
   •    0.480
fgenesh2_kg.5__2399__AT3G59400.1
annotation not avaliable (263 aa)
   •    0.479
fgenesh2_kg.1__1751__AT1G15980.1
annotation not avaliable (460 aa)
   •    0.479

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
cd0015889 cd00158, RHOD, Rhodanese Homology Domain (RHOD); a 1e-07
smart00450100 smart00450, RHOD, Rhodanese Homology Domain 2e-06
>gnl|CDD|238089 cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein Back     alignment and domain information 
 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 28/113 (24%)

Query: 232 LDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEA 291
            +L+  ++ +++D+R  ++     IP     A N    IPL EL  +             
Sbjct: 3   KELLDDEDAVLLDVREPEEYAAGHIP----GAIN----IPLSELEERAA----------- 43

Query: 292 EIVALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSG 344
                    L  ++K   I++     + +   A++L   G  N + +  G   
Sbjct: 44  ---------LLELDKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLA 87

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins. Length = 89
>gnl|CDD|197731 smart00450, RHOD, Rhodanese Homology Domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 391
cd01518101 RHOD_YceA Member of the Rhodanese Homology Domain 99.8
cd01533109 4RHOD_Repeat_2 Member of the Rhodanese Homology Do 99.79
PRK00162108 glpE thiosulfate sulfurtransferase; Validated 99.77
cd0152799 RHOD_YgaP Member of the Rhodanese Homology Domain 99.77
cd01522117 RHOD_1 Member of the Rhodanese Homology Domain sup 99.77
cd01519106 RHOD_HSP67B2 Member of the Rhodanese Homology Doma 99.76
PLN02160136 thiosulfate sulfurtransferase 99.75
cd01448122 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), 99.75
cd0153495 4RHOD_Repeat_3 Member of the Rhodanese Homology Do 99.75
KOG1530136 consensus Rhodanese-related sulfurtransferase [Ino 99.75
cd01528101 RHOD_2 Member of the Rhodanese Homology Domain sup 99.74
cd01523100 RHOD_Lact_B Member of the Rhodanese Homology Domai 99.74
cd01449118 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), 99.74
TIGR03865162 PQQ_CXXCW PQQ-dependent catabolism-associated CXXC 99.74
cd0144496 GlpE_ST GlpE sulfurtransferase (ST) and homologs a 99.72
cd01447103 Polysulfide_ST Polysulfide-sulfurtransferase - Rho 99.71
cd01526122 RHOD_ThiF Member of the Rhodanese Homology Domain 99.71
cd01521110 RHOD_PspE2 Member of the Rhodanese Homology Domain 99.71
cd01525105 RHOD_Kc Member of the Rhodanese Homology Domain su 99.7
cd01520128 RHOD_YbbB Member of the Rhodanese Homology Domain 99.7
PF00581113 Rhodanese: Rhodanese-like domain This Prosite entr 99.7
cd0152490 RHOD_Pyr_redox Member of the Rhodanese Homology Do 99.69
smart00450100 RHOD Rhodanese Homology Domain. An alpha beta fold 99.69
cd01530121 Cdc25 Cdc25 phosphatases are members of the Rhodan 99.66
PRK11493 281 sseA 3-mercaptopyruvate sulfurtransferase; Provisi 99.66
cd0153292 4RHOD_Repeat_1 Member of the Rhodanese Homology Do 99.65
cd0152996 4RHOD_Repeats Member of the Rhodanese Homology Dom 99.65
PLN02723 320 3-mercaptopyruvate sulfurtransferase 99.63
cd0015889 RHOD Rhodanese Homology Domain (RHOD); an alpha be 99.63
cd01445138 TST_Repeats Thiosulfate sulfurtransferases (TST) c 99.63
PRK01415247 hypothetical protein; Validated 99.63
PRK08762 376 molybdopterin biosynthesis protein MoeB; Validated 99.62
cd01535145 4RHOD_Repeat_4 Member of the Rhodanese Homology Do 99.62
PRK09629 610 bifunctional thiosulfate sulfurtransferase/phospha 99.62
COG0607110 PspE Rhodanese-related sulfurtransferase [Inorgani 99.6
cd01531113 Acr2p Eukaryotic arsenate resistance proteins are 99.6
PRK11493281 sseA 3-mercaptopyruvate sulfurtransferase; Provisi 99.59
PRK00142314 putative rhodanese-related sulfurtransferase; Prov 99.58
PLN02723320 3-mercaptopyruvate sulfurtransferase 99.58
PRK05320257 rhodanese superfamily protein; Provisional 99.57
TIGR02981101 phageshock_pspE phage shock operon rhodanese PspE. 99.57
cd01443113 Cdc25_Acr2p Cdc25 enzymes are members of the Rhoda 99.56
PRK10287104 thiosulfate:cyanide sulfurtransferase; Provisional 99.53
PRK11784 345 tRNA 2-selenouridine synthase; Provisional 99.5
PRK09629 610 bifunctional thiosulfate sulfurtransferase/phospha 99.5
PRK07878392 molybdopterin biosynthesis-like protein MoeZ; Vali 99.5
PRK07411390 hypothetical protein; Validated 99.49
COG2897 285 SseA Rhodanese-related sulfurtransferase [Inorgani 99.48
PRK05600370 thiamine biosynthesis protein ThiF; Validated 99.42
COG2897285 SseA Rhodanese-related sulfurtransferase [Inorgani 99.39
cd01446132 DSP_MapKP N-terminal regulatory rhodanese domain o 99.39
PRK05597355 molybdopterin biosynthesis protein MoeB; Validated 99.38
TIGR03167 311 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The 99.38
COG1054308 Predicted sulfurtransferase [General function pred 99.14
KOG1529 286 consensus Mercaptopyruvate sulfurtransferase/thios 98.96
PRK01269482 tRNA s(4)U8 sulfurtransferase; Provisional 98.94
KOG3772325 consensus M-phase inducer phosphatase [Cell cycle 98.75
KOG2017427 consensus Molybdopterin synthase sulfurylase [Coen 98.64
KOG1529286 consensus Mercaptopyruvate sulfurtransferase/thios 98.07
COG5105427 MIH1 Mitotic inducer, protein phosphatase [Cell di 97.43
COG2603 334 Predicted ATPase [General function prediction only 96.68
TIGR01244135 conserved hypothetical protein TIGR01244. No membe 92.97
PF04273110 DUF442: Putative phosphatase (DUF442); InterPro: I 92.07
KOG1717 343 consensus Dual specificity phosphatase [Defense me 88.0
KOG1093725 consensus Predicted protein kinase (contains TBC a 87.64
PRK00142 314 putative rhodanese-related sulfurtransferase; Prov 86.53
PF13350164 Y_phosphatase3: Tyrosine phosphatase family; PDB: 82.88
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information 
Probab=99.80  E-value=1.2e-19  Score=149.67  Aligned_cols=98  Identities=19%  Similarity=0.264  Sum_probs=82.3

Q ss_pred             ccCHHHHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhcC
Q 016309          225 ELTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKRI  304 (391)
Q Consensus       225 ~ISp~ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~kl  304 (391)
                      .|+++++.+++++++.+|||||++.||+.+||||    |+|    ||++++......       +         ..+.+.
T Consensus         3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~g----A~~----ip~~~~~~~~~~-------~---------~~~~~~   58 (101)
T cd01518           3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKG----AVN----PDVDTFREFPFW-------L---------DENLDL   58 (101)
T ss_pred             cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEecc----ccC----CCcccHhHhHHH-------H---------Hhhhhh
Confidence            5899999999987789999999999999999999    999    999876431111       1         111123


Q ss_pred             CCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHH
Q 016309          305 NKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWL  349 (391)
Q Consensus       305 ~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~  349 (391)
                      +++++||+||++|.||..+++.|+++||+||++|.||+.   +|.
T Consensus        59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~---~W~  100 (101)
T cd01518          59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL---KYL  100 (101)
T ss_pred             cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH---HHh
Confidence            789999999999999999999999999999999999999   775

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2 Back     alignment and domain information
>PRK00162 glpE thiosulfate sulfurtransferase; Validated Back     alignment and domain information
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1 Back     alignment and domain information
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>PLN02160 thiosulfate sulfurtransferase Back     alignment and domain information
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain Back     alignment and domain information
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3 Back     alignment and domain information
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2 Back     alignment and domain information
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain Back     alignment and domain information
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein Back     alignment and domain information
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain Back     alignment and domain information
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family Back     alignment and domain information
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>smart00450 RHOD Rhodanese Homology Domain Back     alignment and domain information
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional Back     alignment and domain information
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1 Back     alignment and domain information
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>PLN02723 3-mercaptopyruvate sulfurtransferase Back     alignment and domain information
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein Back     alignment and domain information
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain Back     alignment and domain information
>PRK01415 hypothetical protein; Validated Back     alignment and domain information
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated Back     alignment and domain information
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4 Back     alignment and domain information
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional Back     alignment and domain information
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional Back     alignment and domain information
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional Back     alignment and domain information
>PLN02723 3-mercaptopyruvate sulfurtransferase Back     alignment and domain information
>PRK05320 rhodanese superfamily protein; Provisional Back     alignment and domain information
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE Back     alignment and domain information
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily Back     alignment and domain information
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional Back     alignment and domain information
>PRK11784 tRNA 2-selenouridine synthase; Provisional Back     alignment and domain information
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional Back     alignment and domain information
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated Back     alignment and domain information
>PRK07411 hypothetical protein; Validated Back     alignment and domain information
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK05600 thiamine biosynthesis protein ThiF; Validated Back     alignment and domain information
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase Back     alignment and domain information
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated Back     alignment and domain information
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase Back     alignment and domain information
>COG1054 Predicted sulfurtransferase [General function prediction only] Back     alignment and domain information
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms] Back     alignment and domain information
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional Back     alignment and domain information
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism] Back     alignment and domain information
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms] Back     alignment and domain information
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning] Back     alignment and domain information
>COG2603 Predicted ATPase [General function prediction only] Back     alignment and domain information
>TIGR01244 conserved hypothetical protein TIGR01244 Back     alignment and domain information
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function Back     alignment and domain information
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional Back     alignment and domain information
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
1vee_A134 Nmr Structure Of The Hypothetical Rhodanese Domain 9e-05
>pdb|1VEE|A Chain A, Nmr Structure Of The Hypothetical Rhodanese Domain At4g01050 From Arabidopsis Thaliana Length = 134 Back     alignment and structure 
Iteration: 1

 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 234 LITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSI-PLEELPSKLKGLVRNAKKVEAE 292
           L T  N  ++DIR+  D  + G P +    K  + ++   E+ P  LK L    K  E  
Sbjct: 16  LGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKFKDPE-- 73
Query: 293 IVALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSR 352
                          + + I+D +  ++++VA ++   GFK+ + + DG  G RGWL S 
Sbjct: 74  --------------NTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSS 119
Query: 353 L 353
           L
Sbjct: 120 L 120

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
2fsx_A148 RV0390, COG0607: rhodanese-related sulfurtransfera 3e-16
1vee_A134 Proline-rich protein family; hypothetical protein, 3e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1yt8_A 539 Thiosulfate sulfurtransferase; rhodanase domains, 2e-04
1yt8_A 539 Thiosulfate sulfurtransferase; rhodanase domains, 5e-04
1gmx_A108 GLPE protein; transferase, rhodanese, sulfurtransf 8e-04
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} Length = 148 Back     alignment and structure
 Score = 74.3 bits (182), Expect = 3e-16
 Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 19/143 (13%)

Query: 221 GYKGELTPAQSLDLITAQ-NHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKL 279
            Y G++TP Q+ ++++     +++D+R E +    G+P          +   +  +    
Sbjct: 2   SYAGDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVP------DLSSLGREVVYVEWAT 55

Query: 280 KGLVRNAKKVEAEIVALKISYLKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVA 339
                N   +      +             +I +    + +   A V T  G    + V 
Sbjct: 56  SDGTHNDNFLAELRDRIPADAD---QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVL 112

Query: 340 DGFSG---------RRGWLQSRL 353
           DGF G           GW    L
Sbjct: 113 DGFEGHLDAEGHRGATGWRAVGL 135
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A Length = 134 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539 Back     alignment and structure
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539 Back     alignment and structure
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A Length = 108 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query391
3iwh_A103 Rhodanese-like domain protein; alpha-beta-alpha sa 99.86
3foj_A100 Uncharacterized protein; protein SSP1007, structur 99.86
3eme_A103 Rhodanese-like domain protein; alpha-beta-alpha sa 99.86
3d1p_A139 Putative thiosulfate sulfurtransferase YOR285W; at 99.84
1gmx_A108 GLPE protein; transferase, rhodanese, sulfurtransf 99.83
2hhg_A139 Hypothetical protein RPA3614; MCSG, structural gen 99.83
1qxn_A137 SUD, sulfide dehydrogenase; polysulfide-sulfur tra 99.83
3gk5_A108 Uncharacterized rhodanese-related protein TVG08686 99.83
3hix_A106 ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q 99.82
1tq1_A129 AT5G66040, senescence-associated family protein; C 99.81
2fsx_A148 RV0390, COG0607: rhodanese-related sulfurtransfera 99.81
3ilm_A141 ALR3790 protein; rhodanese-like, NSR437H, NESG, st 99.81
1vee_A134 Proline-rich protein family; hypothetical protein, 99.8
3nhv_A144 BH2092 protein; alpha-beta protein, structural gen 99.79
1wv9_A94 Rhodanese homolog TT1651; CDC25, phosphatase, sulf 99.78
3flh_A124 Uncharacterized protein LP_1913; alpha-beta protei 99.78
2k0z_A110 Uncharacterized protein HP1203; A/B domain, struct 99.78
1e0c_A 271 Rhodanese, sulfurtransferase; sulfur metabolism, t 99.76
1t3k_A152 Arath CDC25, dual-specificity tyrosine phosphatase 99.76
3g5j_A134 Putative ATP/GTP binding protein; N-terminal domai 99.75
1e0c_A271 Rhodanese, sulfurtransferase; sulfur metabolism, t 99.75
3i2v_A127 Adenylyltransferase and sulfurtransferase MOCS3; r 99.74
1urh_A 280 3-mercaptopyruvate sulfurtransferase; rhodanese; 2 99.74
3hzu_A 318 Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, 99.73
1urh_A280 3-mercaptopyruvate sulfurtransferase; rhodanese; 2 99.73
1rhs_A 296 Sulfur-substituted rhodanese; transferase, sulfurt 99.73
3aay_A 277 Putative thiosulfate sulfurtransferase; sulfurtran 99.72
2jtq_A85 Phage shock protein E; solution structure rhodanes 99.7
1uar_A 285 Rhodanese; sulfurtransferase, riken structural gen 99.7
1rhs_A296 Sulfur-substituted rhodanese; transferase, sulfurt 99.7
3olh_A302 MST, 3-mercaptopyruvate sulfurtransferase; structu 99.69
3olh_A 302 MST, 3-mercaptopyruvate sulfurtransferase; structu 99.68
1uar_A285 Rhodanese; sulfurtransferase, riken structural gen 99.67
1c25_A161 CDC25A; hydrolase, cell cycle phosphatase,dual spe 99.67
3aay_A277 Putative thiosulfate sulfurtransferase; sulfurtran 99.67
4f67_A265 UPF0176 protein LPG2838; structural genomics, PSI- 99.65
2ouc_A142 Dual specificity protein phosphatase 10; rhodanese 99.65
1yt8_A 539 Thiosulfate sulfurtransferase; rhodanase domains, 99.65
2j6p_A152 SB(V)-AS(V) reductase; arsenate reductase, antimon 99.64
1okg_A 373 Possible 3-mercaptopyruvate sulfurtransferase; rho 99.64
2vsw_A153 Dual specificity protein phosphatase 16; hydrolase 99.63
2wlr_A 423 Putative thiosulfate sulfurtransferase YNJE; rhoda 99.63
2a2k_A175 M-phase inducer phosphatase 2; dual specificity, s 99.63
3tp9_A474 Beta-lactamase and rhodanese domain protein; struc 99.63
1qb0_A211 Protein (M-phase inducer phosphatase 2 (CDC25B)); 99.63
3op3_A216 M-phase inducer phosphatase 3; structural genomics 99.62
3hzu_A318 Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, 99.61
2eg4_A230 Probable thiosulfate sulfurtransferase; structural 99.6
1yt8_A539 Thiosulfate sulfurtransferase; rhodanase domains, 99.6
2wlr_A423 Putative thiosulfate sulfurtransferase YNJE; rhoda 99.59
1hzm_A154 Dual specificity protein phosphatase 6; hydrolase; 99.59
3ntd_A565 FAD-dependent pyridine nucleotide-disulphide oxido 99.56
3f4a_A169 Uncharacterized protein YGR203W; protein phosphata 99.56
3tg1_B158 Dual specificity protein phosphatase 10; kinase/rh 99.54
3ics_A588 Coenzyme A-disulfide reductase; pyridine nucleotid 99.51
1okg_A373 Possible 3-mercaptopyruvate sulfurtransferase; rho 99.49
3utn_X 327 Thiosulfate sulfurtransferase TUM1; rhodanese-like 99.49
1whb_A157 KIAA0055; deubiqutinating enzyme, UBPY, structural 99.48
2eg4_A230 Probable thiosulfate sulfurtransferase; structural 99.48
2gwf_A157 Ubiquitin carboxyl-terminal hydrolase 8; protein-p 99.47
3r2u_A466 Metallo-beta-lactamase family protein; structural 99.42
3tp9_A474 Beta-lactamase and rhodanese domain protein; struc 99.38
3utn_X327 Thiosulfate sulfurtransferase TUM1; rhodanese-like 99.34
3r2u_A466 Metallo-beta-lactamase family protein; structural 98.91
2f46_A156 Hypothetical protein; structural genomics, joint c 96.69
4erc_A150 Dual specificity protein phosphatase 23; alpha bet 84.74
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A Back     alignment and structure
Probab=99.86  E-value=3.6e-22  Score=166.12  Aligned_cols=99  Identities=22%  Similarity=0.352  Sum_probs=87.4

Q ss_pred             ccCHHHHHHHhhC-CCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhhhhc
Q 016309          225 ELTPAQSLDLITA-QNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISYLKR  303 (391)
Q Consensus       225 ~ISp~ea~~ll~~-~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~L~k  303 (391)
                      .||++|+.+++.+ ++++|||||++.||+.|||||    |+|    ||++++.+++.                      +
T Consensus         3 ~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpg----A~~----ip~~~l~~~~~----------------------~   52 (103)
T 3iwh_A            3 SITTDELKNKLLESKPVQIVDVRTDEETAMGYIPN----AKL----IPMDTIPDNLN----------------------S   52 (103)
T ss_dssp             EECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTT----CEE----CCGGGGGGCGG----------------------G
T ss_pred             CcCHHHHHHHHhCCCCeEEEECCChhHHhcCccCC----ccc----Ccccchhhhhh----------------------h
Confidence            6999999998765 468999999999999999999    999    99988765332                      2


Q ss_pred             CCCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHHhcCCCCcc
Q 016309          304 INKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSDS  357 (391)
Q Consensus       304 l~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aGLpv~s  357 (391)
                      ++++++||+||.+|.||..+++.|+++||++ ++|.|||.   +|.++|+|+++
T Consensus        53 l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~-~~l~GG~~---~W~~~g~pves  102 (103)
T 3iwh_A           53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDA-VNVEGGMH---AWGDEGLEIKS  102 (103)
T ss_dssp             CCTTSEEEEECSSSSHHHHHHHHHHTTTCEE-EEETTHHH---HHCSSSCBCCC
T ss_pred             hcCCCeEEEECCCCHHHHHHHHHHHHcCCCE-EEecChHH---HHHHCCCccee
Confidence            4789999999999999999999999999975 57999999   99999999975
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} Back     alignment and structure
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} Back     alignment and structure
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A Back     alignment and structure
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris} Back     alignment and structure
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 Back     alignment and structure
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Back     alignment and structure
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A Back     alignment and structure
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 Back     alignment and structure
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} Back     alignment and structure
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A Back     alignment and structure
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A Back     alignment and structure
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A Back     alignment and structure
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Back     alignment and structure
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A Back     alignment and structure
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori} Back     alignment and structure
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X Back     alignment and structure
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1 Back     alignment and structure
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile} Back     alignment and structure
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X Back     alignment and structure
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens} Back     alignment and structure
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2 Back     alignment and structure
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A Back     alignment and structure
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2 Back     alignment and structure
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A Back     alignment and structure
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A Back     alignment and structure
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A Back     alignment and structure
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2 Back     alignment and structure
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A Back     alignment and structure
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens} Back     alignment and structure
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens} Back     alignment and structure
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2 Back     alignment and structure
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1 Back     alignment and structure
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A Back     alignment and structure
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp} Back     alignment and structure
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens} Back     alignment and structure
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Back     alignment and structure
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major} Back     alignment and structure
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3 Back     alignment and structure
>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A Back     alignment and structure
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A Back     alignment and structure
>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A Back     alignment and structure
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A Back     alignment and structure
>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens} Back     alignment and structure
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A Back     alignment and structure
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A Back     alignment and structure
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Back     alignment and structure
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A Back     alignment and structure
>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1 Back     alignment and structure
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Back     alignment and structure
>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A* Back     alignment and structure
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens} Back     alignment and structure
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Back     alignment and structure
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3 Back     alignment and structure
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4 Back     alignment and structure
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A Back     alignment and structure
>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4 Back     alignment and structure
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Back     alignment and structure
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Back     alignment and structure
>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491} Back     alignment and structure
>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 391
d2gwfa1135 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal h 0.001
d1tq1a_119 c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senesc 0.002
>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 135 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 20/143 (13%), Positives = 49/143 (34%), Gaps = 31/143 (21%)

Query: 224 GELTPAQSLDLITAQNH--LMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKG 281
           G +T  +   ++T +N   +++D R  +D   + I           +S+P E +   +  
Sbjct: 1   GAITAKELYTMMTDKNISLIIMDARRMQDYQDSCIL--------HSLSVPEEAISPGV-- 50

Query: 282 LVRNAKKVEAEIVALKISYLKRINKGSKIIIMDSYSDSA-------------KIVARVLT 328
               A  +EA +        K+      ++++D +S +               +      
Sbjct: 51  ---TASWIEAHLPDDSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESK 107

Query: 329 SLGFKNCWIVADGFSGRRGWLQS 351
           ++      ++  G+     WL  
Sbjct: 108 TVLRNEPLVLEGGY---ENWLLC 127
>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query391
d1gmxa_108 Sulfurtransferase GlpE {Escherichia coli [TaxId: 5 99.83
d1qxna_137 Polysulfide-sulfur transferase (sulfide dehydrogen 99.83
d1yt8a1136 Thiosulfate sulfurtransferase PA2603 {Pseudomonas 99.83
d1tq1a_119 Thiosulfate sulfurtransferase/Senescence-associate 99.82
d1e0ca2136 Sulfurtransferase {Azotobacter vinelandii [TaxId: 99.82
d1yt8a3157 Thiosulfate sulfurtransferase PA2603 {Pseudomonas 99.8
d1urha1147 3-mercaptopyruvate sulfurtransferase {Escherichia 99.79
d1yt8a2101 Thiosulfate sulfurtransferase PA2603 {Pseudomonas 99.79
d1uara1143 Sulfurtransferase {Thermus thermophilus [TaxId: 27 99.77
d1rhsa1149 Rhodanese {Cow (Bos taurus) [TaxId: 9913]} 99.77
d1e0ca1135 Sulfurtransferase {Azotobacter vinelandii [TaxId: 99.77
d1yt8a4130 Thiosulfate sulfurtransferase PA2603 {Pseudomonas 99.75
d1rhsa2144 Rhodanese {Cow (Bos taurus) [TaxId: 9913]} 99.74
d1t3ka_132 Dual specificity phosphatase Cdc25 {Thale cress (A 99.74
d1urha2120 3-mercaptopyruvate sulfurtransferase {Escherichia 99.73
d1uara2141 Sulfurtransferase {Thermus thermophilus [TaxId: 27 99.72
d1okga1156 3-mercaptopyruvate sulfurtransferase {Leishmania m 99.65
d1okga2139 3-mercaptopyruvate sulfurtransferase {Leishmania m 99.59
d1c25a_161 CDC25a {Human (Homo sapiens) [TaxId: 9606]} 99.57
d1ymka1174 CDC25b {Human (Homo sapiens) [TaxId: 9606]} 99.53
d2gwfa1135 Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Hum 99.49
d1hzma_154 Erk2 binding domain of Mapk phosphatase mkp-3 {Hum 99.35
d1ywfa1272 Phosphotyrosine protein phosphatase PtpB {Mycobact 84.68
>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=9e-22  Score=162.22  Aligned_cols=101  Identities=15%  Similarity=0.310  Sum_probs=87.9

Q ss_pred             CCCCccCHHHHHHHhhCCCcEEEEcCChhhHhhcCCCCCCccccccccccCCCCcchhhhhhhhchHHHHHHHHHHHHhh
Q 016309          221 GYKGELTPAQSLDLITAQNHLMIDIRSEKDKDKAGIPRLPPSAKNRMVSIPLEELPSKLKGLVRNAKKVEAEIVALKISY  300 (391)
Q Consensus       221 ~~~g~ISp~ea~~ll~~~~~vLIDVRs~~Ef~~gHIPGlp~~AvN~~i~IPl~~L~~~l~~ll~n~~~le~~l~a~~I~~  300 (391)
                      .++ .||++|+.+++++++.+|||||++.||..|||||    |+|    +|.+++...+                     
T Consensus         3 ~~~-~Is~~e~~~~l~~~~~~liDvR~~~e~~~ghI~g----A~~----ip~~~l~~~~---------------------   52 (108)
T d1gmxa_           3 QFE-CINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQ----AFH----LTNDTLGAFM---------------------   52 (108)
T ss_dssp             SCE-EECHHHHHHHHHTTCCEEEECSCHHHHHHCEETT----CEE----CCHHHHHHHH---------------------
T ss_pred             CCC-EeCHHHHHHHHHCCCeEEEECCCHHHHHhcCCCC----ccc----ccchhHHHHh---------------------
Confidence            354 7999999999998899999999999999999999    999    9876654322                     


Q ss_pred             hhcCCCCCEEEEEeCCCchHHHHHHHHHHcCCCceEEccCcccccHHHHhcCCCCc
Q 016309          301 LKRINKGSKIIIMDSYSDSAKIVARVLTSLGFKNCWIVADGFSGRRGWLQSRLGSD  356 (391)
Q Consensus       301 L~kl~kd~~IVVyC~sG~rS~~aA~~L~~lGf~nV~vL~GG~~gwraW~~aGLpv~  356 (391)
                       ..++++++||+||.+|.||..++..|+++||+||++|+|||.   +|.++ +|++
T Consensus        53 -~~~~~~~~ivv~c~~g~rs~~~a~~L~~~G~~~v~~l~GG~~---~W~~~-~p~e  103 (108)
T d1gmxa_          53 -RDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE---AWQRQ-FPAE  103 (108)
T ss_dssp             -HHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH---HHHHH-CGGG
T ss_pred             -hhccccCcccccCCCChHHHHHHHHHHHcCCCCEEEEcChHH---HHHHc-CCCc
Confidence             124789999999999999999999999999999999999999   88654 7764
>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]} Back     information, alignment and structure
>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure