Citrus Sinensis ID: 016313

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
Protein Sequence
MLQCLSTKSPSATSSIPASPPAIDVNGYPPGSQGNSTEGSPGASIEPAPNLTQEYSNTVQTNSYNEMWSKIHVLDPNNINHHNHDHDEVQMQIEHINGNEDSHQLLVSQVLQPNRECVDEALRHARPNTLTRLVSTYFDHSENTTNLCLLLHQSIYRARELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDSIDNPFPCPNSHNFHEMRRCFSELKQQLDRKLRKSHSRVRFFSRATSGSTLCVIGTAVAVTIAAAAVATHALVAIVAAPFCTAYFSPGLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQEIHLHQN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHccccccccccccccccHHHHHHcccccccHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHEEEccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mlqclstkspsatssipasppaidvngyppgsqgnstegspgasiepapnltqeysNTVQTNSYNEMWSkihvldpnninhhnhdhdeVQMQIEhingnedsHQLLVSQVLQPNRECVDEALRHARPNTLTRLVSTYfdhsenttNLCLLLHQSIYRARELYAALYELfdifpsdhhslsqlQCDKAFEVFLqfdsidnpfpcpnshnfheMRRCFSELKQQLDRKLRKShsrvrffsratsgstlCVIGTAVAVTIAAAAVATHALVAIVAApfctayfspglakKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQEIHLHQN
Flexible Loop (DISEMBL)
mlqclstkspsatssipasppAIDVNGYPPGSQGNSTEGSPGASIEPAPNLTQEYSNTVQTNSYNEMWSKIHVLDPNNINHHNHDHDEVQMQIEHINGNEDSHQLLVSQVLQPNRECVDEAlrharpntLTRLVSTYFDHSENTTNLCLLLHQSIYRARELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDSIDNPFPCPNSHNFHEMRRCFSELKQQLDRKLRkshsrvrffsratsgstlcVIGTAVAVTIAAAAVATHALVAIVAAPFCTAYFSPGLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTavegdkqlvrfglergrdkhSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQEIHLHQN
Low Complexity Region (SEG)
MLQCLstkspsatssipasppaiDVNGYPPGSQGNSTEGSPGASIEPAPNLTQEYSNTVQTNSYNEMWSKIHVLDPnninhhnhdhdEVQMQIEHINGNEDSHQLLVSQVLQPNRECVDEALRHARPNTLTRLVSTYFDHSENTTNLCLLLHQSIYRARELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDSIDNPFPCPNSHNFHEMRRCFSELKQQLDRKLRKSHSRVRFFSRATSGSTLCvigtavavtiaaaavathalvaivaaPFCTAYFSPGLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQEIHLHQN
Disordered region (IsUnstruct)
***************************************************************YNEMWSKIHVLDPNNIN***********************QLLVSQVLQPNRECVDEALRHARPNTLTRLVSTYFDHSENTTNLCLLLHQSIYRARELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDSIDNPFPCPNSHNFHEMRRCFSEL*************RVRFFSRATSGSTLCVIGTAVAVTIAAAAVATHALVAIVAAPFCTAYFSPGLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQEIH****
Disordered Region (DISOPRED)
******************************************************YSNTVQTNSYNEMWSKIHVLD*****************************LLVSQVLQPNRECVDEALRHARPNTLTRLVSTYFDHSENTTNLCLLLHQSIYRARELYAALYELFDIFPSDHH*LSQLQCDKAFEVFLQFDSIDNPFPCPNSHNFHEMRR***********************SRATSGSTLCVIGTAVAVTIAAAAVATHALVAIVAAPFCTAYFSPGLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRR*Q**FTDQLKDLEEHICLCFNTVNRARSLLLQEIHL***
Disordered Region (DISEMBL)
******************SPPAIDVNGYPP**************IEPAPNLTQEYSNTVQTNSYNEMWSKIHVLDPNNINHHNHDHDEVQMQIEHINGNEDSHQLLVSQVLQPNRECVDEALRHARPNTLTRLVSTYFDHSENTTNLCLLLHQSIYRARELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDSIDNPFPCPNSHNFHEMRRCFSELKQ***********RVRFFSRATSGSTLCVIGTAVAVTIAAAAVATHALVAIVAAPFCTAYFSPGLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQEIHLHQN
Disordered Region (DISPRO)
***********************************************APNLTQEYSNTVQTNSYNEMWSKIHVLDPN**********************EDSHQLLVSQVLQPNRECVDEALRHARPNTLTRLVSTYFDHSENTTNLCLLLHQSIYRARELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDSIDNPFPCPNSHNFHEMRRCFSELKQQLDRKLRKSHSRVRFFSRATSGSTLCVIGTAVAVTIAAAAVATHALVAIVAAPFCTAYFSPGLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQEIHL***
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQCLSTKSPSATSSIPASPPAIDVNGYPPGSQGNSTEGSPGASIEPAPNLTQEYSNTVQTNSYNEMWSKIHVLDPNNINHHNHDHDEVQMQIEHINGNEDSHQLLVSQVLQPNRECVDEALRHARPNTLTRLVSTYFDHSENTTNLCLLLHQSIYRARELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDSIDNPFPCPNSHNFHEMRRCFSELKQQLDRKLRKSHSRVRFFSRATSGSTLCVIGTAVAVTIAAAAVATHALVAIVAAPFCTAYFSPGLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVxxxxxxxxxxxxxxxxxxxxxICLCFNTVNRARSLLLQEIHLHQN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	391	2.2.26 [Sep-21-2011]
Q9LT84	382	UPF0496 protein At3g19330	yes	no	0.913	0.934	0.496	4e-91
Q9LJK4	360	UPF0496 protein At3g19250	no	no	0.859	0.933	0.456	2e-79
Q9SMU4	416	UPF0496 protein At3g49070	no	no	0.861	0.810	0.303	2e-30
A2XCJ1	378	UPF0496 protein 3 OS=Oryz	N/A	no	0.797	0.825	0.275	9e-26
Q10RR9	378	UPF0496 protein 3 OS=Oryz	no	no	0.797	0.825	0.275	6e-25
Q6DYE5	390	UPF0496 protein At1g20180	no	no	0.884	0.887	0.244	4e-19
Q5Z8N6	408	Putative UPF0496 protein	no	no	0.240	0.230	0.361	2e-13
A2YH25	408	Putative UPF0496 protein	N/A	no	0.240	0.230	0.361	2e-13
Q9SYZ7	374	UPF0496 protein At4g34320	no	no	0.708	0.740	0.220	2e-05
Q10QE9	388	UPF0496 protein 1 OS=Oryz	no	no	0.649	0.654	0.240	9e-05

>sp|Q9LT84|U496M_ARATH UPF0496 protein At3g19330 OS=Arabidopsis thaliana GN=At3g19330 PE=2 SV=2

 Score =  335 bits (859), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 189/381 (49%), Positives = 254/381 (66%), Gaps = 24/381 (6%)

Query: 17  PASPPAI---DVNGYPPGSQGNSTEGSPGASIE-PAPNLTQEYSNTVQTNSYNEMWSKIH 72
           PASP A    D   +P    G ++     ASI  P  NL++E ++  QT SY+++ S++H
Sbjct: 9   PASPEASLGDDPLPHPSLESGVASTSRNDASISSPTFNLSRELAHAFQTPSYHDVRSRVH 68

Query: 73  VL-DPNNINHHNHDHDEVQMQIEHINGNEDSHQLLVSQVLQPNRECVDEALRHARPNTLT 131
           V+ D   I+H       +Q  IE          LL+SQVLQPN+ECV EA+RH +  TLT
Sbjct: 69  VVVDLTQIHHR-----LIQPDIE----------LLLSQVLQPNKECVQEAIRHVKQTTLT 113

Query: 132 RLVSTYFDHSENTTNLCLLLHQSIYRARE-LYAALYELFDIFPSDH-HSLSQLQCDKAFE 189
            LVSTYF HSE+ T LCL L+Q+++ AR  LY  L +LF+IFP D   ++ +  CD AF+
Sbjct: 114 NLVSTYFQHSEDATRLCLNLYQNVHSARHHLYTPLLDLFNIFPGDSLPAIDESLCDLAFD 173

Query: 190 VFLQFDSIDNPFPCPNSHNFHEMRRCFSELKQQLDRKLRKSHSRVRFFSRATSGSTLCVI 249
           VFL+ D+ +NPF  P S++F + + CFS+LK  LDR+LRKS SRVR    AT+GS+LC++
Sbjct: 174 VFLKLDTFENPFSSPESYSFRDTQLCFSQLKHNLDRRLRKSRSRVRLIHHATAGSSLCLV 233

Query: 250 GTAVAVTIAAAAVATHAL--VAIVAAPFCTAYFSPGLAKKQLAHVAQLDAAKKGIYVLNN 307
              VAV  +A  +A+HAL  + +VA P C+ Y      +K+L ++ QL+AA KG +VLN 
Sbjct: 234 AAVVAVAASAVVIASHALPILLVVAGPLCSPYLPHSFKRKELTNICQLNAASKGTFVLNK 293

Query: 308 DLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEH 367
           DLDTIDRLV+RL+T +E DK L+R GLERGRD HSIQE++K LR++    T QLKDLE+H
Sbjct: 294 DLDTIDRLVSRLHTGIEYDKFLIRLGLERGRDVHSIQEILKLLRKSHLPLTHQLKDLEDH 353

Query: 368 ICLCFNTVNRARSLLLQEIHL 388
           ICL F  VN+ARSLLL EIHL
Sbjct: 354 ICLWFTNVNKARSLLLTEIHL 374

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJK4|U496L_ARATH UPF0496 protein At3g19250 OS=Arabidopsis thaliana GN=At3g19250 PE=2 SV=1

 Score =  296 bits (758), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 167/366 (45%), Positives = 232/366 (63%), Gaps = 30/366 (8%)

Query: 29  PPGSQGNS--TEGSPGASIEPAPNLTQEYSNTVQTNSYNEMWSKIHVLDPNNINHHNHDH 86
           P GS G+      SP  S+    NL+ E ++  QT SY+++ S++ V+DP          
Sbjct: 12  PEGSLGDDHLPHPSPEGSVASTFNLSHELAHAFQTPSYHDIRSRLLVIDPT--------- 62

Query: 87  DEVQMQIEHINGNEDSHQLLVSQVLQPNRECVDEAL--RHARPNTLTRLVSTYFDHSENT 144
                        +++ +L +SQ L+PN E V EAL  RHA+  TLT LVSTYF HSE+ 
Sbjct: 63  -------------QENLELFLSQELRPNNESVQEALSLRHAKQTTLTNLVSTYFQHSEDA 109

Query: 145 TNLCLLLHQSIYRAR-ELYAALYELFDIFPSDHHS-LSQLQCDKAFEVFLQFDSIDNPFP 202
           T  CL L+Q+++ AR  LY  L +LF+IFP D HS + +  C+ AF+VFL+ D+ +NPF 
Sbjct: 110 TRFCLNLYQNVHSARCHLYTPLLDLFNIFPRDSHSAIDESFCNLAFDVFLKLDTFENPFA 169

Query: 203 CPNSHNFHEMRRCFSELKQQLDRKLRKSHSRVRFFSRATSGSTLCVIGTAVAVTIAAAAV 262
            P SH+F + + CF +L  +LD ++RKS SRVR    AT+GS LC++   V V  +AA +
Sbjct: 170 SPESHSFQDTQLCFYQLADKLDTRIRKSKSRVRLLHHATAGSALCLVTAVVVVAASAAFI 229

Query: 263 ATHAL--VAIVAAPFCTAYFSPGLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLY 320
           A HAL  + +VA P CT Y      KK+L+++ QL+ A KG + LN DLDTIDRLV+RL+
Sbjct: 230 AYHALPTILVVAGPLCTPYLPHSFKKKELSNIFQLNVAAKGTFALNKDLDTIDRLVSRLH 289

Query: 321 TAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARS 380
           T V+ DK L+R GLERGRD ++I E VKQLR++  N T QL+ L +HIC  F  VN++RS
Sbjct: 290 TGVKNDKLLIRLGLERGRDVYTIPEFVKQLRKSHVNHTHQLEVLVDHICRWFTNVNKSRS 349

Query: 381 LLLQEI 386
           LLL+EI
Sbjct: 350 LLLKEI 355

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMU4|U496N_ARATH UPF0496 protein At3g49070 OS=Arabidopsis thaliana GN=At3g49070 PE=2 SV=1

 Score =  134 bits (336), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 181/362 (50%), Gaps = 25/362 (6%)

Query: 31  GSQGNSTEGSPGASIEPAPNLTQEYSNTVQTNSYNEMWSKIHVLDPNNINHHNHDHDEVQ 90
           G+   S+    GA ++    + +EY+N  +T SYN  W+++  L        +       
Sbjct: 55  GTASGSSNPKDGADVD----VREEYANAFRTESYNHFWTRVVQLSRKKSAVSSSSSSPPI 110

Query: 91  MQIEHINGNEDSHQLLVSQVLQPNRECVDEALRHARPNTLTR-LVSTYFDHSENTTNLCL 149
                 +    S++L    +L P+   +   L  +R    TR L+S YF  + N   LC 
Sbjct: 111 ESSST-SARLMSYRLFAHNLLDPDLNTITRILDVSRVGRHTRTLLSDYFLETANAFLLCT 169

Query: 150 LLHQSIYRARELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDSIDNPFPCPNSHNF 209
            L ++I+  R  Y +L   F     +H+SL+ +  D+  E+   FD    PF    S   
Sbjct: 170 QLLKNIHHLRSKYESLKPKFH--SENHNSLALI--DQFTEISKWFD----PFISSGSR-I 220

Query: 210 HEMRRCFSELKQQLDRKLRKSHSRVRFFSRAT--SGSTLCVIGTAVAVTIAAAAVATHAL 267
             +R     L ++L+ +  K+ ++++  +  T  SG  +  + T + VTIA     +HA 
Sbjct: 221 QLIRSGCLYLLKRLESRRDKTRAKLKLINGLTHSSGLLVLALTTTLIVTIA-----SHAF 275

Query: 268 VAIVAAP-FCTAYFSP-GLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEG 325
              +AAP    + F P GL  K     A+LD A KG Y+L+ DLDTI RLV R+   V  
Sbjct: 276 ALFLAAPTLLASQFKPAGLRNKLTKTAARLDVAAKGTYILSRDLDTISRLVTRINDEVNH 335

Query: 326 DKQLVRFGLERGRDK-HSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQ 384
            + +  F + RG  +    +EV ++L+R +++F+++L +LEEHI LCF T+NRAR+LL++
Sbjct: 336 VRAMAEFWVGRGSGRVRGSEEVARELKRCEESFSEELDELEEHIYLCFMTINRARNLLVK 395

Query: 385 EI 386
           EI
Sbjct: 396 EI 397

Arabidopsis thaliana (taxid: 3702)

>sp|A2XCJ1|U496C_ORYSI UPF0496 protein 3 OS=Oryza sativa subsp. indica GN=OsI_009784 PE=3 SV=2

 Score =  118 bits (295), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 165/360 (45%), Gaps = 48/360 (13%)

Query: 50  NLTQEYSNTVQTNSYNEMWSKIHVLDPNNINHHNHDHDEVQMQIEHINGNE-------DS 102
           +  +EY++  +T SYN+ W++  VLD   + H         +   H  G          S
Sbjct: 33  DFREEYTSAFRTESYNDFWAR--VLDIT-LAHG------AALVPRHGGGGGCAASKRLPS 83

Query: 103 HQLLVSQVLQPNRECVDEALRHARPNTLT----RLVSTYFDHSENTTNLCLLLHQSIYRA 158
           ++L    +L+P++  V  AL   R + L      L++ Y+  + N + LC  L + I   
Sbjct: 84  YRLFAEHLLEPDQRAVAAALASPRGSRLRPDVRGLLAAYYAETANASFLCSHLLKDIEHI 143

Query: 159 RELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDS-IDNPFPC--PNSHNFHEMRRC 215
           R  Y  L           H+L +L  D          + +  PF     +     E++  
Sbjct: 144 RLRYRPL----------KHTLRKLASDVGVSGLADVSAALGQPFTALAASQGRLREVQAG 193

Query: 216 FSELKQQLDRKLRKSHSRVRFFSRATSGSTLCVIGTAVAVTIAAAAVATHALVAIVAAPF 275
             +L + LD   +K+  R+R  +R     ++  +     V +  A +  H L A  A P 
Sbjct: 194 SGDLLRGLDAGRKKARHRIRSVARLRRALSVSFVTAVAVVAVVGACIGVHILAAFAAFPM 253

Query: 276 CTA------YFSPGLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQL 329
            +       +FS   A++ L    QL+AA KG Y+LN D++TI RLVAR+    E    L
Sbjct: 254 MSPAWLGERFFSGRAARRALV---QLEAAAKGTYILNRDMETISRLVARVRDEGEHMVAL 310

Query: 330 VRFGLER------GRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLL 383
           +R  +E       G     +QEV++QL +N+++F  QL +LEEH+ LCF T+N+AR +++
Sbjct: 311 LRLCVEHRPAAGAGGKGRLVQEVLRQLSKNEESFRQQLDELEEHLFLCFMTINKARIMVM 370

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q10RR9|U496C_ORYSJ UPF0496 protein 3 OS=Oryza sativa subsp. japonica GN=Os03g0148000 PE=2 SV=1

 Score =  115 bits (288), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 163/360 (45%), Gaps = 48/360 (13%)

Query: 50  NLTQEYSNTVQTNSYNEMWSKIHVLDPNNINHHNHDHDEVQMQIEHINGNE-------DS 102
           +  +EY++  +T SYN+ W++  VLD   + H         +   H  G          S
Sbjct: 33  DFREEYTSAFRTESYNDFWAR--VLDIT-LAHG------AALVPRHGGGGGCAASKRLPS 83

Query: 103 HQLLVSQVLQPNRECVDEALRHARPNTLT----RLVSTYFDHSENTTNLCLLLHQSIYRA 158
           ++L    +L+P++  V  AL   R + L      L++ Y+  + N + LC  L + I   
Sbjct: 84  YRLFAEHLLEPDQRAVAAALASPRGSRLRPDVRGLLAAYYAETANASFLCSHLLKDIEHI 143

Query: 159 RELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDS-IDNPFPC--PNSHNFHEMRRC 215
           R  Y  L           H+L +L  D          + +  PF     +     E++  
Sbjct: 144 RLRYRPL----------KHTLRKLASDVGVSGLADVSAALGQPFTALAASQGRLREVQAG 193

Query: 216 FSELKQQLDRKLRKSHSRVRFFSRATSGSTLCVIGTAVAVTIAAAAVATHALVAIVAAPF 275
             +L + LD   +K+  R+R  +R     ++  +     V +  A +  H L A  A P 
Sbjct: 194 SGDLLRGLDAGRKKARHRIRSVARLRRALSVSFVTAVAVVAVVGACIGVHILAAFAAFPM 253

Query: 276 CTA------YFSPGLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQL 329
            +       +FS   A++ L    QL+AA KG Y+LN D++TI RLVAR+    E    L
Sbjct: 254 MSPAWLGERFFSGRAARRALV---QLEAAAKGTYILNRDMETISRLVARVRDEGEHMVAL 310

Query: 330 VRFGLER------GRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLL 383
            R  +E       G     +QEV++QL +N+++F  QL +LEEH+ LCF T N+AR +++
Sbjct: 311 RRLCVEHRPAAGAGGKGRLVQEVLRQLSKNEESFRQQLDELEEHLFLCFMTTNKARIMVM 370

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6DYE5|U496K_ARATH UPF0496 protein At1g20180 OS=Arabidopsis thaliana GN=At1g20180 PE=2 SV=2

 Score = 96.3 bits (238), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 172/381 (45%), Gaps = 35/381 (9%)

Query: 30  PGSQGNSTEGSPGASIEPAPNLTQEYSNTVQTNSYNEMWSKIHVLDPNNINHHNHDHDEV 89
           P  +G S +     S+    ++ +EY    +TNSY E  +K    D   I   +      
Sbjct: 16  PTRKGKS-DKECCRSLTSKLSVNEEYKEAFRTNSYLETRTKAE--DQLGITSCSKLSSSS 72

Query: 90  QMQIEHINGNEDSHQLLVSQVLQPNRECVDEALRHARPNTLTRLVSTYFDHSENTTNLCL 149
                  + +  SH      +L P +E +D  ++ +   +L  L+ T+FD S    ++C 
Sbjct: 73  PSPSSSSDLSFHSH--FTDYLLDPPQETLDALMQDS---SLDNLIVTFFDLSSEACDVCE 127

Query: 150 LLHQSIYRARELYAALYELFDIFPSDHHSLSQLQCDK------AFEVFLQFDSIDNPF-P 202
            L Q + + +  +  +  +  I     +    L+C         F+   +F ++ NP   
Sbjct: 128 TLLQCLQQIKINHNKIKRVMKIGKRVCNGAKTLECSPEMLCALIFQELSRFAALKNPLCR 187

Query: 203 CPNSHNFHEMRRCFSELKQQLD--RKLRKSHSRVRFFSRATSGSTLCVIGTAVAVTIAAA 260
             N   F  +    S+L  +L   ++  +   R   F +   G +L +  +A+ +T+   
Sbjct: 188 IVNEAQFRIVHDANSDLLTKLTSKKRRIRRKIRFFKFCKKLGGYSLVITHSAIVITLLI- 246

Query: 261 AVATHALVAIVAAPFCTAYFSPGLAKKQLAHV---------------AQLDAAKKGIYVL 305
            +A H+++ + AAP      S  L +K+ A                  Q+D A KG+++L
Sbjct: 247 -IALHSILGVFAAPALLGLCSFCLLRKKKAKGRMHKSNKDTTLEKLGTQIDIAAKGMFIL 305

Query: 306 NNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLE 365
            NDLDT+ RL  RL   +E  K +      + R    ++E +++   +++ F+DQL++LE
Sbjct: 306 INDLDTLSRLAGRLCDEIEHRKTVAAM-CAKSRKIEVLKEALREFNGHEEKFSDQLQELE 364

Query: 366 EHICLCFNTVNRARSLLLQEI 386
           EH+ LCF+T+NR+R L+L +I
Sbjct: 365 EHLYLCFHTINRSRRLVLAQI 385

Arabidopsis thaliana (taxid: 3702)

>sp|Q5Z8N6|U496B_ORYSJ Putative UPF0496 protein 2 OS=Oryza sativa subsp. japonica GN=Os06g0718300 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 57/94 (60%)

Query: 293 AQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRR 352
           A LDAA +G Y++  DLDT+ R+V R +  +E  + + R  +    ++  +QEV ++   
Sbjct: 292 ATLDAAARGAYIVGRDLDTVSRMVRRAHDELEHGRDVARIAMRGHGERPLLQEVAREEEE 351

Query: 353 NQQNFTDQLKDLEEHICLCFNTVNRARSLLLQEI 386
            +++   QL +LEEH+CLC  T+NR R L+  E+
Sbjct: 352 CEEDLRAQLAELEEHVCLCLITINRTRRLVAHEM 385

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YH25|U496B_ORYSI Putative UPF0496 protein 2 OS=Oryza sativa subsp. indica GN=OsI_023618 PE=3 SV=2

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 57/94 (60%)

Query: 293 AQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRR 352
           A LDAA +G Y++  DLDT+ R+V R +  +E  + + R  +    ++  +QEV ++   
Sbjct: 292 ATLDAAARGAYIVGRDLDTVSRMVRRAHDELEHGRDVARIAMRGHGERPLLQEVAREEEE 351

Query: 353 NQQNFTDQLKDLEEHICLCFNTVNRARSLLLQEI 386
            +++   QL +LEEH+CLC  T+NR R L+  E+
Sbjct: 352 CEEDLRAQLAELEEHVCLCLITINRTRRLVAHEM 385

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9SYZ7|U496A_ARATH UPF0496 protein At4g34320 OS=Arabidopsis thaliana GN=At4g34320 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 123/317 (38%), Gaps = 40/317 (12%)

Query: 101 DSHQLLVSQVLQPNRECVDEALRHARP----NTLTRLVSTYFDHSENTTNLCLLLHQSIY 156
           DS + +   +L+ N+E V   L   +       +  LV  YF++S  T + C  L + + 
Sbjct: 66  DSLKEVTQCLLEMNQEVVKVILDCKKDIWKNQEMFELVEDYFENSLKTLDFCAALEKGLR 125

Query: 157 RARELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDSIDNPFPCPNSHNFHEMRRCF 216
           RAR+ +  +      F  +          K  E    F   ++PF   N   F   +  +
Sbjct: 126 RARDSHLLILVALQQFEDESLVQGGNGYKKTLEELKNFKDAESPF---NEDFFKMFQSVY 182

Query: 217 SE----------LKQQLDRKLRKSHSRVRFFSRATSGSTLCVIGTAVAVTIAAAAVATHA 266
            +           K +LD+KL+  H+  +        S++  + T   V I +   A  A
Sbjct: 183 KQQMLMLEKLQHRKNKLDKKLKCIHTWRKL-------SSIIFVATFATVLICSVVAAAMA 235

Query: 267 LVAIVAAPFCTAYFSPGLAKKQLAHVAQ------------LDAAKKGIYVLNNDLDTIDR 314
              + AA         G   K +  + +            + + + G +V   DLD I  
Sbjct: 236 APPVAAALAAATAVPLGSMGKWIDSLWKNYENALKGQKEVISSMQAGTFVAVKDLDNIRV 295

Query: 315 LVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNT 374
           L+ RL   + G  +   F +E    K  I ++ K+L    + F   +++L     LC   
Sbjct: 296 LIERLEIEITGMVKSAEFAVEHNAVKIGIDDIKKKL----EVFKKNVEELGTQADLCSRD 351

Query: 375 VNRARSLLLQEIHLHQN 391
           + RAR+++LQ I  H N
Sbjct: 352 IRRARTVILQRIIKHPN 368

Arabidopsis thaliana (taxid: 3702)

>sp|Q10QE9|U496A_ORYSJ UPF0496 protein 1 OS=Oryza sativa subsp. japonica GN=Os03g0199100 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 116/279 (41%), Gaps = 25/279 (8%)

Query: 133 LVSTYFDHSENTTNLCLLLHQSIYRARE----LYAALYELFDIFPSDHHSLSQL------ 182
           LV  YF+ S +T + C  L + + RAR+    L+ AL    D   +D  +  Q       
Sbjct: 111 LVEDYFESSLHTLDFCTALDKCLKRARDSQLLLHVALQRFDDEEDNDAAAAGQEDAAPSA 170

Query: 183 QCDKAFEVFLQFDSIDNPFPCPNSHNFHEMRR-------CFSELKQQLDRKLR--KSHSR 233
           +  +      QF +  +PF       F  + R          + K +LD+K+R  K+  R
Sbjct: 171 RYARTLHELRQFKAAGDPFTEEFFSAFQAVYRQQLTMLEKLQQRKHRLDKKVRAIKAWRR 230

Query: 234 VRFFSRATSGSTLCVIGTAVAVTIAAAAVATHALVAIVAAPFCTAYFSPGLAKKQLAHVA 293
           V     AT+ + + +     A   A    A  A  A +       +    L   Q A   
Sbjct: 231 VSSIIFATTFAAVLICSVVAAAIAAPPVAAALAAAASIPVGSMGKWIDSLLKGYQDALRG 290

Query: 294 Q---LDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQL 350
           Q   + A + G ++   DLD+I  L+ R+   +      V F     RD+ +++  V+++
Sbjct: 291 QKEVVSAMQVGTFIAIKDLDSIRVLINRVELEISSMIDCVEFA---ERDEEAVKFGVEEI 347

Query: 351 RRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQEIHLH 389
           ++  + F   ++DL E    C   + RAR+++LQ I  H
Sbjct: 348 KKKLEVFMKSVEDLGEQADRCSRDIRRARTVVLQRIIRH 386

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
147797970	996	hypothetical protein VITISV_028729 [Viti	0.890	0.349	0.609	1e-122
225457729	376	PREDICTED: UPF0496 protein At3g19330 [Vi	0.943	0.981	0.582	1e-120
255543517	407	conserved hypothetical protein [Ricinus	0.959	0.921	0.560	1e-116
255543515	389	conserved hypothetical protein [Ricinus	0.971	0.976	0.486	3e-98
42565016	382	uncharacterized protein [Arabidopsis tha	0.913	0.934	0.496	3e-89
11994455	377	unnamed protein product [Arabidopsis tha	0.913	0.946	0.496	4e-89
297830582	349	hypothetical protein ARALYDRAFT_479449 [	0.864	0.968	0.464	2e-85
42572489	345	uncharacterized protein [Arabidopsis tha	0.836	0.947	0.464	2e-80
42572487	349	uncharacterized protein [Arabidopsis tha	0.836	0.936	0.464	2e-80
145338705	360	uncharacterized protein [Arabidopsis tha	0.859	0.933	0.456	1e-77

>gi|147797970|emb|CAN67266.1| hypothetical protein VITISV_028729 [Vitis vinifera]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/361 (60%), Positives = 273/361 (75%), Gaps = 13/361 (3%)

Query: 35  NSTEGSPGASIEPAP--NLTQEYSNTVQTNSYNEMWSKIHVLDPNNINHHNHDHDEVQMQ 92
           NS E +P +  + +P  NLT+EY+  VQTNSYNE+WSKIHV   ++  + + D D     
Sbjct: 642 NSREDTPRSISQTSPTVNLTREYTLAVQTNSYNEIWSKIHVRHQDDYTNTDPDQD----- 696

Query: 93  IEHINGN--EDSHQLLVSQVLQPNRECVDEALRHARPNTLTRLVSTYFDHSENTTNLCLL 150
               +G   ED  QL ++ VL+P+RECV +ALRHAR NTLTRLVS YFDHSENT+ LCLL
Sbjct: 697 ---TDGEREEDVQQLRLAHVLRPDRECVQDALRHARSNTLTRLVSDYFDHSENTSQLCLL 753

Query: 151 LHQSIYRARELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDSIDNPFPCPNSHNFH 210
           LH+S++ A  LY+ L++L DI P D  SL+Q QCB+AF+VFLQFDS+DNPFPCP+SHNF 
Sbjct: 754 LHRSVHHAHSLYSPLHDLLDILPLDSDSLTQSQCBQAFDVFLQFDSLDNPFPCPDSHNFR 813

Query: 211 EMRRCFSELKQQLDRKLRKSHSRVRFFSRATSGSTLCVIGTAVAVTIAAAAVATHALVAI 270
           +MRRCFS+LK+QLD  +RKS S++R   RAT+GS  C IGTAV V I+A A+ATH LVA+
Sbjct: 814 DMRRCFSQLKEQLDGHIRKSRSKIRLICRATAGSAFCFIGTAVGVAISAVAIATHTLVAL 873

Query: 271 VAAPFCTAYFSPGLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLV 330
           + AP  T +  P L+KK+LAH AQLDAA +G YVL +DL TID LVA L+TAVEGDK+L+
Sbjct: 874 I-APLSTVFLPPRLSKKELAHGAQLDAAARGTYVLCHDLGTIDSLVAWLHTAVEGDKRLI 932

Query: 331 RFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQEIHLHQ 390
           R GLE GRDKH+IQEV K L +N   F  QLKDLEEHICLCF TVNRARSLLL+EI LHQ
Sbjct: 933 RLGLEGGRDKHTIQEVAKHLCKNHLYFLHQLKDLEEHICLCFTTVNRARSLLLREIDLHQ 992

Query: 391 N 391
           +
Sbjct: 993 S 993

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457729|ref|XP_002274305.1| PREDICTED: UPF0496 protein At3g19330 [Vitis vinifera] gi|297745643|emb|CBI40808.3| unnamed protein product [Vitis vinifera]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/395 (58%), Positives = 287/395 (72%), Gaps = 26/395 (6%)

Query: 1   MLQCLSTKSPSATSS--IPASPPAIDVNGYPPGSQGNSTEGSPGASIEPAP--NLTQEYS 56
           MLQCLS KS ++TS+  +P                 NS E +P +  + +P  NLT+EY+
Sbjct: 1   MLQCLSLKSSASTSTTTVPVE---------------NSREDTPRSISQTSPTVNLTREYT 45

Query: 57  NTVQTNSYNEMWSKIHVLDPNNINHHNHDHDEVQMQIEHINGNEDSHQLLVSQVLQPNRE 116
             VQTNSYNE+WSKIHV   ++  + + D D    +       ED  QL ++ VL+P+RE
Sbjct: 46  LAVQTNSYNEIWSKIHVRHQDDYTNTDPDQDTDGER------EEDVQQLRLAHVLRPDRE 99

Query: 117 CVDEALRHARPNTLTRLVSTYFDHSENTTNLCLLLHQSIYRARELYAALYELFDIFPSDH 176
           CV +ALRHAR NTLTRLVS YFDHSENT+ LCLLLH+S++ A  LY+ L++L DI P D 
Sbjct: 100 CVQDALRHARSNTLTRLVSDYFDHSENTSQLCLLLHRSVHHAHSLYSPLHDLLDILPLDS 159

Query: 177 HSLSQLQCDKAFEVFLQFDSIDNPFPCPNSHNFHEMRRCFSELKQQLDRKLRKSHSRVRF 236
            SL+Q QC++AF+VFLQFDS+DNPFPCP+SHNF +MRRCFS+LK+QLD  +RKS S++R 
Sbjct: 160 DSLTQSQCNQAFDVFLQFDSLDNPFPCPDSHNFRDMRRCFSQLKEQLDGHIRKSRSKIRL 219

Query: 237 FSRATSGSTLCVIGTAVAVTIAAAAVATHALVAIVAAPFCTAYFSPGLAKKQLAHVAQLD 296
             RAT+GS  C IGTAV V I+A A+ATH LVA++ AP  T +  P L+KK+LAH AQLD
Sbjct: 220 ICRATAGSAFCFIGTAVGVAISAVAIATHTLVALI-APLSTVFLPPRLSKKELAHGAQLD 278

Query: 297 AAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQN 356
           AA +G YVL +DL TID LVA L+TAVEGDK+L+R GLE GRDKH+IQEV K L +N   
Sbjct: 279 AAARGTYVLCHDLGTIDSLVAWLHTAVEGDKRLIRLGLEGGRDKHTIQEVAKHLCKNHLY 338

Query: 357 FTDQLKDLEEHICLCFNTVNRARSLLLQEIHLHQN 391
           F  QLKDLEEHICLCF TVNRARSLLL+EI LHQ+
Sbjct: 339 FLHQLKDLEEHICLCFTTVNRARSLLLREIDLHQS 373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543517|ref|XP_002512821.1| conserved hypothetical protein [Ricinus communis] gi|223547832|gb|EEF49324.1| conserved hypothetical protein [Ricinus communis]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/396 (56%), Positives = 281/396 (70%), Gaps = 21/396 (5%)

Query: 3   QCLSTKSPSA--TSSIPASPPAI-DVNGYPPGSQGNSTEGSPGASI--EPAPNLTQEYSN 57
           +CLS KSP A  ++SIP SPP I D+N       GNST+G+P +     P  NLT+EY+ 
Sbjct: 21  KCLSLKSPPAARSTSIPNSPPTIIDLNH--DCEAGNSTDGTPVSCTLQSPVVNLTREYAL 78

Query: 58  TVQTNSYNEMWSKIHVLDPNNINHHNHDHDEVQMQIEH-INGN-EDSHQLLVSQVLQPNR 115
            VQ+NS+NEM S+IH           H   E   QIE  +N + ED  Q +++QVL PNR
Sbjct: 79  YVQSNSFNEMRSRIH-----------HQEIENGEQIESSLNIDVEDVRQFVLAQVLHPNR 127

Query: 116 ECVDEALRHARPNTLTRLVSTYFDHSENTTNLCLLLHQSIYRARELYAALYELFDIFPSD 175
           +CV++ALRHA+PNTLTRLVS YFDHSE+TT+LCLLLH+S++RAR++Y+ +  L ++ P +
Sbjct: 128 QCVEDALRHAKPNTLTRLVSNYFDHSESTTDLCLLLHRSVFRARDIYSPIRNLLEVLPVE 187

Query: 176 HHSLSQLQCDKAFEVFLQFDSIDNPFPCPNSHNFHEMRRCFSELKQQLDRKLRKSHSRVR 235
             SL+Q QCD A+E+F+QFD  DNPFPCP SH F  + R FSEL QQLD +LRKS S+V 
Sbjct: 188 MDSLTQSQCDYAYEIFMQFDRCDNPFPCPFSHEFEGIHRSFSELSQQLDHRLRKSRSKVH 247

Query: 236 FFSRATSGSTLCVIGTAVAVTIAAAAVATHALVAIVAAPFCTAYFSPG-LAKKQLAHVAQ 294
              RAT  S LC IG+AVA+T+ A A+  HALVAIVA PFC     P  L KK+LAHV Q
Sbjct: 248 LVRRATLASALCFIGSAVAITLTALAITGHALVAIVACPFCAVTSLPSNLTKKELAHVKQ 307

Query: 295 LDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQ 354
           LDAA +G YVLNN+LDT+DRLVA LY ++E DK L+R GL  G DK+ I EV+K LR+N 
Sbjct: 308 LDAAARGTYVLNNELDTVDRLVALLYNSIENDKHLIRLGLGTGSDKYFISEVLKHLRKNH 367

Query: 355 QNFTDQLKDLEEHICLCFNTVNRARSLLLQEIHLHQ 390
               DQLK+LE+HICL F  VNRAR+LLLQEIH++Q
Sbjct: 368 PTVIDQLKNLEKHICLYFIAVNRARNLLLQEIHVYQ 403

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543515|ref|XP_002512820.1| conserved hypothetical protein [Ricinus communis] gi|223547831|gb|EEF49323.1| conserved hypothetical protein [Ricinus communis]

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 192/395 (48%), Positives = 258/395 (65%), Gaps = 15/395 (3%)

Query: 1   MLQCLSTKSPSATSS--IPASPPAIDVNGYPPGSQGNSTEGSPGASI--EPAPNLTQEYS 56
           ML CLS KSPSA +S  IP SPP I V+ +     GNST+G+P +S    P  NL  EYS
Sbjct: 1   MLPCLSLKSPSAATSTCIPDSPPTI-VDLHHHSQAGNSTDGTPVSSTLQSPVVNLGHEYS 59

Query: 57  NTVQTNSYNEMWSKIHVLDPNNINHHNHDHDEVQMQIEHINGNEDSHQLLVSQVLQPNRE 116
             VQ+NS+NE++S           HH    +  Q++      +E + Q ++++VL PNR+
Sbjct: 60  LYVQSNSFNEIYSG---------THHQEITNGEQIESNFDADDEGARQFVLARVLHPNRQ 110

Query: 117 CVDEALRHARPNTLTRLVSTYFDHSENTTNLCLLLHQSIYRARELYAALYELFDIFPSDH 176
           CV++ALRHA+PNT+TRLVS +FDHSE+ T+LCLLL +S++RAR +Y+ ++ L +  P + 
Sbjct: 111 CVEDALRHAKPNTVTRLVSNFFDHSESATDLCLLLRRSVFRARAIYSPIHNLLEKLPIEL 170

Query: 177 HSLSQLQCDKAFEVFLQFDSIDNPFPCPNSHNFHEMRRCFSELKQQLDRKLRKSHSRVRF 236
            SL+Q  CD A E+ +QF+  D+PFP P+SHNF  +R  FSEL+QQLD +  +S SRV F
Sbjct: 171 ESLTQSHCDNAHEMLVQFNRCDSPFPFPDSHNFQGVRHSFSELRQQLDNRRLRSRSRVHF 230

Query: 237 FSRATSGSTLCVIGTAVAVTIAAAAVATHALVAIVAAPFCTAY-FSPGLAKKQLAHVAQL 295
              A     LC +G+AV +  +A A+  HAL A+ A PFC A  F   L KK+LAHV QL
Sbjct: 231 VRPAAVACALCFVGSAVTIIFSALAITGHALFAVAACPFCAAANFPRNLTKKELAHVEQL 290

Query: 296 DAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQ 355
           +AA +G Y+L+  L TI  LV RL+  +E DK  +R GL  G DK+ I EV+K LR+N  
Sbjct: 291 NAAARGTYMLDEHLTTIGPLVTRLHDCIESDKHFIRLGLGLGSDKYIISEVLKHLRKNHL 350

Query: 356 NFTDQLKDLEEHICLCFNTVNRARSLLLQEIHLHQ 390
            F DQLK LE+HICL F+ VNRAR  L QEIH+HQ
Sbjct: 351 KFFDQLKVLEDHICLYFSAVNRARIQLFQEIHVHQ 385

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565016|ref|NP_188564.2| uncharacterized protein [Arabidopsis thaliana] gi|158706504|sp|Q9LT84.2|U496M_ARATH RecName: Full=UPF0496 protein At3g19330 gi|332642703|gb|AEE76224.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 189/381 (49%), Positives = 254/381 (66%), Gaps = 24/381 (6%)

Query: 17  PASPPAI---DVNGYPPGSQGNSTEGSPGASIE-PAPNLTQEYSNTVQTNSYNEMWSKIH 72
           PASP A    D   +P    G ++     ASI  P  NL++E ++  QT SY+++ S++H
Sbjct: 9   PASPEASLGDDPLPHPSLESGVASTSRNDASISSPTFNLSRELAHAFQTPSYHDVRSRVH 68

Query: 73  VL-DPNNINHHNHDHDEVQMQIEHINGNEDSHQLLVSQVLQPNRECVDEALRHARPNTLT 131
           V+ D   I+H       +Q  IE          LL+SQVLQPN+ECV EA+RH +  TLT
Sbjct: 69  VVVDLTQIHHR-----LIQPDIE----------LLLSQVLQPNKECVQEAIRHVKQTTLT 113

Query: 132 RLVSTYFDHSENTTNLCLLLHQSIYRARE-LYAALYELFDIFPSDH-HSLSQLQCDKAFE 189
            LVSTYF HSE+ T LCL L+Q+++ AR  LY  L +LF+IFP D   ++ +  CD AF+
Sbjct: 114 NLVSTYFQHSEDATRLCLNLYQNVHSARHHLYTPLLDLFNIFPGDSLPAIDESLCDLAFD 173

Query: 190 VFLQFDSIDNPFPCPNSHNFHEMRRCFSELKQQLDRKLRKSHSRVRFFSRATSGSTLCVI 249
           VFL+ D+ +NPF  P S++F + + CFS+LK  LDR+LRKS SRVR    AT+GS+LC++
Sbjct: 174 VFLKLDTFENPFSSPESYSFRDTQLCFSQLKHNLDRRLRKSRSRVRLIHHATAGSSLCLV 233

Query: 250 GTAVAVTIAAAAVATHAL--VAIVAAPFCTAYFSPGLAKKQLAHVAQLDAAKKGIYVLNN 307
              VAV  +A  +A+HAL  + +VA P C+ Y      +K+L ++ QL+AA KG +VLN 
Sbjct: 234 AAVVAVAASAVVIASHALPILLVVAGPLCSPYLPHSFKRKELTNICQLNAASKGTFVLNK 293

Query: 308 DLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEH 367
           DLDTIDRLV+RL+T +E DK L+R GLERGRD HSIQE++K LR++    T QLKDLE+H
Sbjct: 294 DLDTIDRLVSRLHTGIEYDKFLIRLGLERGRDVHSIQEILKLLRKSHLPLTHQLKDLEDH 353

Query: 368 ICLCFNTVNRARSLLLQEIHL 388
           ICL F  VN+ARSLLL EIHL
Sbjct: 354 ICLWFTNVNKARSLLLTEIHL 374

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11994455|dbj|BAB02457.1| unnamed protein product [Arabidopsis thaliana]

 Score =  334 bits (857), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 189/381 (49%), Positives = 254/381 (66%), Gaps = 24/381 (6%)

Query: 17  PASPPAI---DVNGYPPGSQGNSTEGSPGASIE-PAPNLTQEYSNTVQTNSYNEMWSKIH 72
           PASP A    D   +P    G ++     ASI  P  NL++E ++  QT SY+++ S++H
Sbjct: 9   PASPEASLGDDPLPHPSLESGVASTSRNDASISSPTFNLSRELAHAFQTPSYHDVRSRVH 68

Query: 73  VL-DPNNINHHNHDHDEVQMQIEHINGNEDSHQLLVSQVLQPNRECVDEALRHARPNTLT 131
           V+ D   I+H       +Q  IE          LL+SQVLQPN+ECV EA+RH +  TLT
Sbjct: 69  VVVDLTQIHHR-----LIQPDIE----------LLLSQVLQPNKECVQEAIRHVKQTTLT 113

Query: 132 RLVSTYFDHSENTTNLCLLLHQSIYRARE-LYAALYELFDIFPSDH-HSLSQLQCDKAFE 189
            LVSTYF HSE+ T LCL L+Q+++ AR  LY  L +LF+IFP D   ++ +  CD AF+
Sbjct: 114 NLVSTYFQHSEDATRLCLNLYQNVHSARHHLYTPLLDLFNIFPGDSLPAIDESLCDLAFD 173

Query: 190 VFLQFDSIDNPFPCPNSHNFHEMRRCFSELKQQLDRKLRKSHSRVRFFSRATSGSTLCVI 249
           VFL+ D+ +NPF  P S++F + + CFS+LK  LDR+LRKS SRVR    AT+GS+LC++
Sbjct: 174 VFLKLDTFENPFSSPESYSFRDTQLCFSQLKHNLDRRLRKSRSRVRLIHHATAGSSLCLV 233

Query: 250 GTAVAVTIAAAAVATHAL--VAIVAAPFCTAYFSPGLAKKQLAHVAQLDAAKKGIYVLNN 307
              VAV  +A  +A+HAL  + +VA P C+ Y      +K+L ++ QL+AA KG +VLN 
Sbjct: 234 AAVVAVAASAVVIASHALPILLVVAGPLCSPYLPHSFKRKELTNICQLNAASKGTFVLNK 293

Query: 308 DLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEH 367
           DLDTIDRLV+RL+T +E DK L+R GLERGRD HSIQE++K LR++    T QLKDLE+H
Sbjct: 294 DLDTIDRLVSRLHTGIEYDKFLIRLGLERGRDVHSIQEILKLLRKSHLPLTHQLKDLEDH 353

Query: 368 ICLCFNTVNRARSLLLQEIHL 388
           ICL F  VN+ARSLLL EIHL
Sbjct: 354 ICLWFTNVNKARSLLLTEIHL 374

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830582|ref|XP_002883173.1| hypothetical protein ARALYDRAFT_479449 [Arabidopsis lyrata subsp. lyrata] gi|297329013|gb|EFH59432.1| hypothetical protein ARALYDRAFT_479449 [Arabidopsis lyrata subsp. lyrata]

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 182/392 (46%), Positives = 239/392 (60%), Gaps = 54/392 (13%)

Query: 1   MLQCLSTKSPSATSSIPASPPAIDVNGYPPGSQGNSTEGSPGASIE-PAPNLTQEYSNTV 59
           M  CLS    S   S+   P       +P    G ++     ASI+ P  NL++E ++  
Sbjct: 1   MRNCLSFNPASPEVSLGDDPLP-----HPSIESGEASTSRNDASIQSPTFNLSRELAHAF 55

Query: 60  QTNSYNEMWSKIHVL-DPNNINHHNHDHDEVQMQIEHINGNEDSHQLLVSQVLQPNRECV 118
           QT SY+++ S++HV+ DP       H H  +Q  IE          LL+SQVLQPN+ECV
Sbjct: 56  QTPSYHDVRSRVHVVVDPTQ-----HHHQYIQPDIE----------LLISQVLQPNKECV 100

Query: 119 DEALRHARPNTLTRLVSTYFDHSENTTNLCLLLHQSIYRAR-ELYAALYELFDIFPSD-H 176
            EA+RH +  TLT LVSTYF HSEN T LCL L+Q+++ AR  LY  L +LF+ FP D H
Sbjct: 101 QEAIRHFKQTTLTHLVSTYFQHSENATRLCLNLYQNVHSARHHLYTPLLDLFNSFPGDTH 160

Query: 177 HSLSQLQCDKAFEVFLQFDSIDNPFPCPNSHNFHEMRRCFSELKQQLDRKLRKSHSRVRF 236
            ++ +  C+ AF+VFL+ D+ +NPF  P SH+F + + CFS+LK  LDR+LRKS SRVR 
Sbjct: 161 AAIDESLCNLAFDVFLKLDTFENPFSSPESHSFQDTQLCFSQLKNNLDRRLRKSRSRVRL 220

Query: 237 FSRATSGSTLCVIGTAVAVTIAAAAVATHALVAIVAAPFCTAYFSPGLAKKQLAHVAQLD 296
              AT+G                              P C+ Y      +K+L ++ QL+
Sbjct: 221 IHHATAG------------------------------PLCSPYLPHSFKRKELTNICQLN 250

Query: 297 AAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQN 356
           AA KG +VLN DLDTIDRLV+RL++ +E DK L+R GLERGRD HSIQE+VKQLR+N  N
Sbjct: 251 AASKGTFVLNKDLDTIDRLVSRLHSGIEYDKHLIRLGLERGRDLHSIQEIVKQLRKNNLN 310

Query: 357 FTDQLKDLEEHICLCFNTVNRARSLLLQEIHL 388
            T QLKDLE+HICL F  VN+ARSLLL+EIHL
Sbjct: 311 LTHQLKDLEDHICLWFTNVNKARSLLLKEIHL 342

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572489|ref|NP_974340.1| uncharacterized protein [Arabidopsis thaliana] gi|332642704|gb|AEE76225.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 176/379 (46%), Positives = 233/379 (61%), Gaps = 52/379 (13%)

Query: 17  PASPPAI---DVNGYPPGSQGNSTEGSPGASIE-PAPNLTQEYSNTVQTNSYNEMWSKIH 72
           PASP A    D   +P    G ++     ASI  P  NL++E ++  QT SY+++ S++H
Sbjct: 9   PASPEASLGDDPLPHPSLESGVASTSRNDASISSPTFNLSRELAHAFQTPSYHDVRSRVH 68

Query: 73  VL-DPNNINHHNHDHDEVQMQIEHINGNEDSHQLLVSQVLQPNRECVDEALRHARPNTLT 131
           V+ D   I+H       +Q  IE          LL+SQVLQPN+ECV EA+RH +  TLT
Sbjct: 69  VVVDLTQIHHR-----LIQPDIE----------LLLSQVLQPNKECVQEAIRHVKQTTLT 113

Query: 132 RLVSTYFDHSENTTNLCLLLHQSIYRAR-ELYAALYELFDIFPSDH-HSLSQLQCDKAFE 189
            LVSTYF HSE+ T LCL L+Q+++ AR  LY  L +LF+IFP D   ++ +  CD AF+
Sbjct: 114 NLVSTYFQHSEDATRLCLNLYQNVHSARHHLYTPLLDLFNIFPGDSLPAIDESLCDLAFD 173

Query: 190 VFLQFDSIDNPFPCPNSHNFHEMRRCFSELKQQLDRKLRKSHSRVRFFSRATSGSTLCVI 249
           VFL+ D+ +NPF  P S++F + + CFS+LK  LDR+LRKS SRVR    AT+G      
Sbjct: 174 VFLKLDTFENPFSSPESYSFRDTQLCFSQLKHNLDRRLRKSRSRVRLIHHATAG------ 227

Query: 250 GTAVAVTIAAAAVATHALVAIVAAPFCTAYFSPGLAKKQLAHVAQLDAAKKGIYVLNNDL 309
                                   P C+ Y      +K+L ++ QL+AA KG +VLN DL
Sbjct: 228 ------------------------PLCSPYLPHSFKRKELTNICQLNAASKGTFVLNKDL 263

Query: 310 DTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHIC 369
           DTIDRLV+RL+T +E DK L+R GLERGRD HSIQE++K LR++    T QLKDLE+HIC
Sbjct: 264 DTIDRLVSRLHTGIEYDKFLIRLGLERGRDVHSIQEILKLLRKSHLPLTHQLKDLEDHIC 323

Query: 370 LCFNTVNRARSLLLQEIHL 388
           L F  VN+ARSLLL EIHL
Sbjct: 324 LWFTNVNKARSLLLTEIHL 342

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572487|ref|NP_974339.1| uncharacterized protein [Arabidopsis thaliana] gi|189339296|gb|ACD89068.1| At3g19330 [Arabidopsis thaliana] gi|332642705|gb|AEE76226.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 176/379 (46%), Positives = 233/379 (61%), Gaps = 52/379 (13%)

Query: 17  PASPPAI---DVNGYPPGSQGNSTEGSPGASIE-PAPNLTQEYSNTVQTNSYNEMWSKIH 72
           PASP A    D   +P    G ++     ASI  P  NL++E ++  QT SY+++ S++H
Sbjct: 9   PASPEASLGDDPLPHPSLESGVASTSRNDASISSPTFNLSRELAHAFQTPSYHDVRSRVH 68

Query: 73  VL-DPNNINHHNHDHDEVQMQIEHINGNEDSHQLLVSQVLQPNRECVDEALRHARPNTLT 131
           V+ D   I+H       +Q  IE          LL+SQVLQPN+ECV EA+RH +  TLT
Sbjct: 69  VVVDLTQIHHR-----LIQPDIE----------LLLSQVLQPNKECVQEAIRHVKQTTLT 113

Query: 132 RLVSTYFDHSENTTNLCLLLHQSIYRAR-ELYAALYELFDIFPSDH-HSLSQLQCDKAFE 189
            LVSTYF HSE+ T LCL L+Q+++ AR  LY  L +LF+IFP D   ++ +  CD AF+
Sbjct: 114 NLVSTYFQHSEDATRLCLNLYQNVHSARHHLYTPLLDLFNIFPGDSLPAIDESLCDLAFD 173

Query: 190 VFLQFDSIDNPFPCPNSHNFHEMRRCFSELKQQLDRKLRKSHSRVRFFSRATSGSTLCVI 249
           VFL+ D+ +NPF  P S++F + + CFS+LK  LDR+LRKS SRVR    AT+G      
Sbjct: 174 VFLKLDTFENPFSSPESYSFRDTQLCFSQLKHNLDRRLRKSRSRVRLIHHATAG------ 227

Query: 250 GTAVAVTIAAAAVATHALVAIVAAPFCTAYFSPGLAKKQLAHVAQLDAAKKGIYVLNNDL 309
                                   P C+ Y      +K+L ++ QL+AA KG +VLN DL
Sbjct: 228 ------------------------PLCSPYLPHSFKRKELTNICQLNAASKGTFVLNKDL 263

Query: 310 DTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHIC 369
           DTIDRLV+RL+T +E DK L+R GLERGRD HSIQE++K LR++    T QLKDLE+HIC
Sbjct: 264 DTIDRLVSRLHTGIEYDKFLIRLGLERGRDVHSIQEILKLLRKSHLPLTHQLKDLEDHIC 323

Query: 370 LCFNTVNRARSLLLQEIHL 388
           L F  VN+ARSLLL EIHL
Sbjct: 324 LWFTNVNKARSLLLTEIHL 342

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145338705|ref|NP_188556.2| uncharacterized protein [Arabidopsis thaliana] gi|75273581|sp|Q9LJK4.1|U496L_ARATH RecName: Full=UPF0496 protein At3g19250 gi|9294627|dbj|BAB02966.1| unnamed protein product [Arabidopsis thaliana] gi|91806441|gb|ABE65948.1| hypothetical protein At3g19250 [Arabidopsis thaliana] gi|332642692|gb|AEE76213.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 167/366 (45%), Positives = 232/366 (63%), Gaps = 30/366 (8%)

Query: 29  PPGSQGNS--TEGSPGASIEPAPNLTQEYSNTVQTNSYNEMWSKIHVLDPNNINHHNHDH 86
           P GS G+      SP  S+    NL+ E ++  QT SY+++ S++ V+DP          
Sbjct: 12  PEGSLGDDHLPHPSPEGSVASTFNLSHELAHAFQTPSYHDIRSRLLVIDPT--------- 62

Query: 87  DEVQMQIEHINGNEDSHQLLVSQVLQPNRECVDEAL--RHARPNTLTRLVSTYFDHSENT 144
                        +++ +L +SQ L+PN E V EAL  RHA+  TLT LVSTYF HSE+ 
Sbjct: 63  -------------QENLELFLSQELRPNNESVQEALSLRHAKQTTLTNLVSTYFQHSEDA 109

Query: 145 TNLCLLLHQSIYRAR-ELYAALYELFDIFPSDHHS-LSQLQCDKAFEVFLQFDSIDNPFP 202
           T  CL L+Q+++ AR  LY  L +LF+IFP D HS + +  C+ AF+VFL+ D+ +NPF 
Sbjct: 110 TRFCLNLYQNVHSARCHLYTPLLDLFNIFPRDSHSAIDESFCNLAFDVFLKLDTFENPFA 169

Query: 203 CPNSHNFHEMRRCFSELKQQLDRKLRKSHSRVRFFSRATSGSTLCVIGTAVAVTIAAAAV 262
            P SH+F + + CF +L  +LD ++RKS SRVR    AT+GS LC++   V V  +AA +
Sbjct: 170 SPESHSFQDTQLCFYQLADKLDTRIRKSKSRVRLLHHATAGSALCLVTAVVVVAASAAFI 229

Query: 263 ATHAL--VAIVAAPFCTAYFSPGLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLY 320
           A HAL  + +VA P CT Y      KK+L+++ QL+ A KG + LN DLDTIDRLV+RL+
Sbjct: 230 AYHALPTILVVAGPLCTPYLPHSFKKKELSNIFQLNVAAKGTFALNKDLDTIDRLVSRLH 289

Query: 321 TAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARS 380
           T V+ DK L+R GLERGRD ++I E VKQLR++  N T QL+ L +HIC  F  VN++RS
Sbjct: 290 TGVKNDKLLIRLGLERGRDVYTIPEFVKQLRKSHVNHTHQLEVLVDHICRWFTNVNKSRS 349

Query: 381 LLLQEI 386
           LLL+EI
Sbjct: 350 LLLKEI 355

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
TAIR|locus:2090624	382	AT3G19330 "AT3G19330" [Arabido	0.887	0.908	0.467	2e-79
TAIR|locus:2094123	360	AT3G19250 "AT3G19250" [Arabido	0.859	0.933	0.428	8.9e-70
TAIR|locus:2101363	416	AT3G49070 [Arabidopsis thalian	0.869	0.817	0.281	2e-31
TAIR|locus:2198591	390	AT1G20180 "AT1G20180" [Arabido	0.235	0.235	0.397	1.1e-19
TAIR|locus:2116214	374	AT4G34320 "AT4G34320" [Arabido	0.237	0.248	0.288	4.2e-06
TAIR|locus:2053962	393	AT2G18630 [Arabidopsis thalian	0.212	0.211	0.220	0.00013

TAIR|locus:2090624 AT3G19330 "AT3G19330" [Arabidopsis thaliana (taxid:3702)]

 Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
 Identities = 171/366 (46%), Positives = 228/366 (62%)

Query:    28 YPPGSQGNSTEGSPGASIE-PAPNLTQEYSNTVQTNSYNEMWSKIHVLDPXXXXXXXXXX 86
             +P    G ++     ASI  P  NL++E ++  QT SY+++ S++HV+            
Sbjct:    23 HPSLESGVASTSRNDASISSPTFNLSRELAHAFQTPSYHDVRSRVHVVVDLT-------- 74

Query:    87 XEVQMQIEHINGNEDSHQLLVSQVLQPNRECVDEALRHARPNTLTRLVSTYFDHSENTTN 146
                  QI H     D  +LL+SQVLQPN+ECV EA+RH +  TLT LVSTYF HSE+ T 
Sbjct:    75 -----QIHHRLIQPDI-ELLLSQVLQPNKECVQEAIRHVKQTTLTNLVSTYFQHSEDATR 128

Query:   147 LCLLLHQSIYRARE-LYAALYELFDIFPSDH-HSLSQLQCDKAFEVFLQFDSIDNPFPCP 204
             LCL L+Q+++ AR  LY  L +LF+IFP D   ++ +  CD AF+VFL+ D+ +NPF  P
Sbjct:   129 LCLNLYQNVHSARHHLYTPLLDLFNIFPGDSLPAIDESLCDLAFDVFLKLDTFENPFSSP 188

Query:   205 NSHNFHEMRRCFSELKQQLDRKLRKSHSRVRFFSRATSGSTLCXXXXXXXXXXXXXXXXX 264
              S++F + + CFS+LK  LDR+LRKS SRVR    AT+GS+LC                 
Sbjct:   189 ESYSFRDTQLCFSQLKHNLDRRLRKSRSRVRLIHHATAGSSLCLVAAVVAVAASAVVIAS 248

Query:   265 XXX--XXXXXXPFCTAYFSPGLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTA 322
                        P C+ Y      +K+L ++ QL+AA KG +VLN DLDTIDRLV+RL+T 
Sbjct:   249 HALPILLVVAGPLCSPYLPHSFKRKELTNICQLNAASKGTFVLNKDLDTIDRLVSRLHTG 308

Query:   323 VEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLL 382
             +E DK L+R GLERGRD HSIQE++K LR++    T QLKDLE+HICL F  VN+ARSLL
Sbjct:   309 IEYDKFLIRLGLERGRDVHSIQEILKLLRKSHLPLTHQLKDLEDHICLWFTNVNKARSLL 368

Query:   383 LQEIHL 388
             L EIHL
Sbjct:   369 LTEIHL 374

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2094123 AT3G19250 "AT3G19250" [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 157/366 (42%), Positives = 216/366 (59%)

Query:    29 PPGSQGNS--TEGSPGASIEPAPNLTQEYSNTVQTNSYNEMWSKIHVLDPXXXXXXXXXX 86
             P GS G+      SP  S+    NL+ E ++  QT SY+++ S++ V+DP          
Sbjct:    12 PEGSLGDDHLPHPSPEGSVASTFNLSHELAHAFQTPSYHDIRSRLLVIDPT--------- 62

Query:    87 XEVQMQIEHINGNEDSHQLLVSQVLQPNRECVDEAL--RHARPNTLTRLVSTYFDHSENT 144
                          +++ +L +SQ L+PN E V EAL  RHA+  TLT LVSTYF HSE+ 
Sbjct:    63 -------------QENLELFLSQELRPNNESVQEALSLRHAKQTTLTNLVSTYFQHSEDA 109

Query:   145 TNLCLLLHQSIYRAR-ELYAALYELFDIFPSDHHS-LSQLQCDKAFEVFLQFDSIDNPFP 202
             T  CL L+Q+++ AR  LY  L +LF+IFP D HS + +  C+ AF+VFL+ D+ +NPF 
Sbjct:   110 TRFCLNLYQNVHSARCHLYTPLLDLFNIFPRDSHSAIDESFCNLAFDVFLKLDTFENPFA 169

Query:   203 CPNSHNFHEMRRCFSELKQQLDRKLRKSHSRVRFFSRATSGSTLCXXXXXXXXXXXXXXX 262
              P SH+F + + CF +L  +LD ++RKS SRVR    AT+GS LC               
Sbjct:   170 SPESHSFQDTQLCFYQLADKLDTRIRKSKSRVRLLHHATAGSALCLVTAVVVVAASAAFI 229

Query:   263 XXXX--XXXXXXXPFCTAYFSPGLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLY 320
                          P CT Y      KK+L+++ QL+ A KG + LN DLDTIDRLV+RL+
Sbjct:   230 AYHALPTILVVAGPLCTPYLPHSFKKKELSNIFQLNVAAKGTFALNKDLDTIDRLVSRLH 289

Query:   321 TAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARS 380
             T V+ DK L+R GLERGRD ++I E VKQLR++  N T QL+ L +HIC  F  VN++RS
Sbjct:   290 TGVKNDKLLIRLGLERGRDVYTIPEFVKQLRKSHVNHTHQLEVLVDHICRWFTNVNKSRS 349

Query:   381 LLLQEI 386
             LLL+EI
Sbjct:   350 LLLKEI 355

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101363 AT3G49070 [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 101/359 (28%), Positives = 166/359 (46%)

Query:    31 GSQGNSTEGSPGASIEPAPNLTQEYSNTVQTNSYNEMWSKIHVLDPXXXXXXXXXXXEVQ 90
             G+   S+    GA ++    + +EY+N  +T SYN  W+++  L                
Sbjct:    55 GTASGSSNPKDGADVD----VREEYANAFRTESYNHFWTRVVQLSRKKSAVSSSSSSP-P 109

Query:    91 MQIEHINGNEDSHQLLVSQVLQPNRECVDEALRHARPNTLTR-LVSTYFDHSENTTNLCL 149
             ++    +    S++L    +L P+   +   L  +R    TR L+S YF  + N   LC 
Sbjct:   110 IESSSTSARLMSYRLFAHNLLDPDLNTITRILDVSRVGRHTRTLLSDYFLETANAFLLCT 169

Query:   150 LLHQSIYRARELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDSIDNPFPCPNSHNF 209
              L ++I+  R  Y +L   F     +H+SL+ +  D+  E+   FD    PF    S   
Sbjct:   170 QLLKNIHHLRSKYESLKPKFH--SENHNSLALI--DQFTEISKWFD----PFISSGSRIQ 221

Query:   210 HEMRRCFSELKQQLDRKLRKSHSRVRFFSRATSGSTLCXXXXXXXXXXXXXXXXXXXXXX 269
                  C   LK+ L+ +  K+ ++++  +  T  S L                       
Sbjct:   222 LIRSGCLYLLKR-LESRRDKTRAKLKLINGLTHSSGLLVLALTTTLIVTIASHAFALFLA 280

Query:   270 XXXXPFCTAYFSP-GLAKKQLAHVAQLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQ 328
                     + F P GL  K     A+LD A KG Y+L+ DLDTI RLV R+   V   + 
Sbjct:   281 APT--LLASQFKPAGLRNKLTKTAARLDVAAKGTYILSRDLDTISRLVTRINDEVNHVRA 338

Query:   329 LVRFGLERGRDK-HSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQEI 386
             +  F + RG  +    +EV ++L+R +++F+++L +LEEHI LCF T+NRAR+LL++EI
Sbjct:   339 MAEFWVGRGSGRVRGSEEVARELKRCEESFSEELDELEEHIYLCFMTINRARNLLVKEI 397

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2198591 AT1G20180 "AT1G20180" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
 Identities = 37/93 (39%), Positives = 62/93 (66%)

Query:   294 QLDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRN 353
             Q+D A KG+++L NDLDT+ RL  RL   +E  K +      + R    ++E +++   +
Sbjct:   294 QIDIAAKGMFILINDLDTLSRLAGRLCDEIEHRKTVAAM-CAKSRKIEVLKEALREFNGH 352

Query:   354 QQNFTDQLKDLEEHICLCFNTVNRARSLLLQEI 386
             ++ F+DQL++LEEH+ LCF+T+NR+R L+L +I
Sbjct:   353 EEKFSDQLQELEEHLYLCFHTINRSRRLVLAQI 385

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2116214 AT4G34320 "AT4G34320" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
 Identities = 28/97 (28%), Positives = 47/97 (48%)

Query:   295 LDAAKKGIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQ 354
             + + + G +V   DLD I  L+ RL   + G  +   F +E    K  I ++ K+L    
Sbjct:   276 ISSMQAGTFVAVKDLDNIRVLIERLEIEITGMVKSAEFAVEHNAVKIGIDDIKKKL---- 331

Query:   355 QNFTDQLKDLEEHICLCFNTVNRARSLLLQEIHLHQN 391
             + F   +++L     LC   + RAR+++LQ I  H N
Sbjct:   332 EVFKKNVEELGTQADLCSRDIRRARTVILQRIIKHPN 368

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2053962 AT2G18630 [Arabidopsis thaliana (taxid:3702)]

 Score = 85 (35.0 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 19/86 (22%), Positives = 45/86 (52%)

Query:   301 GIYVLNNDLDTIDRLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQ 360
             G Y+   ++D I  LV ++   +E   +   F +   ++   ++  + ++++    FT+ 
Sbjct:   293 GTYISVKEMDNISILVRKVEVEIESLLKKAEFAITEEKE---VRLAIDEIKKKLDVFTET 349

Query:   361 LKDLEEHICLCFNTVNRARSLLLQEI 386
             +++L EH     + V +AR+++LQ I
Sbjct:   350 IEELGEHAGKYCSDVTKARTVILQRI 375

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LT84	U496M_ARATH	No assigned EC number	0.4960	0.9130	0.9345	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: AT3G19330 polyadenylate-binding protein-related / PABP-related; polyadenylate-binding protein-related / PABP-related; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- plasma membrane; EXPRESSED IN- shoot apex, flower, seed; EXPRESSED DURING- petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF677 (InterPro-IPR007749); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G19250.1); Has 66 Blast hits to 66 proteins in 6 species- Archae - 0; Bacteria - 0; Metaz [...] (382 aa) (Arabidopsis thaliana)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	391
pfam05055	336	pfam05055, DUF677, Protein of unknown function (DU	5e-14

>gnl|CDD|218403 pfam05055, DUF677, Protein of unknown function (DUF677)

 Score = 72.1 bits (177), Expect = 5e-14
 Identities = 60/313 (19%), Positives = 134/313 (42%), Gaps = 30/313 (9%)

Query: 99  NEDSHQLLVSQVLQPNRECVD---EALRHARPN-TLTRLVSTYFDHSENTTNLCLLLHQS 154
           + DS   +   +L+ N++ V    E+      N  L  LV+ YF+ ++ T + C  L   
Sbjct: 29  SHDSLMEVTKCLLEMNQDVVKVIIESKEDVWENQDLFSLVNVYFESTKKTLDFCETLENC 88

Query: 155 IYRAR--ELY--AALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDSIDNPFPCPNSHNFH 210
           + RA   +L    A+ +             + + +K  E   +F ++ +PF   +   F 
Sbjct: 89  VERAERSQLLIREAVAQFEKESLDKDVGKKKKKYEKTLEELKKFKAMGDPF---DGEEFT 145

Query: 211 EM-RRCF----------SELKQQLDRKLRKSHSRVRFFSRATSGSTLCV-IGTAVAVTIA 258
              +  +           + K++LD+KLR   +     +     + + V + + VA  + 
Sbjct: 146 TQFQSVYKQQVLMLEELRKTKKKLDKKLRNIKTWRIISNVVFVAAFVAVLVLSVVAAAMG 205

Query: 259 AAAVATHALVAIVAAPF-CTAYFSPGLAKKQLAHVAQ----LDAAKKGIYVLNNDLDTID 313
           A  V    +   +A P      +     KK    + +    + + +KGI V   D++ I 
Sbjct: 206 APPVV--GVAGALAVPLEAVGKWVGSAWKKYEEALKRQKEIISSMEKGIQVNVKDMENIS 263

Query: 314 RLVARLYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFN 373
            LV RL + +    + V F +E   ++ +++  + ++++  +  T++++++ E    C  
Sbjct: 264 ILVDRLESEITSMLKTVEFAVEHEENEVAVRIAMDEIKKKVEVLTEKIEEVGEEAAKCSK 323

Query: 374 TVNRARSLLLQEI 386
            + + R+++LQ+I
Sbjct: 324 FIAKGRTVVLQKI 336

This family consists of AT14A like proteins from Arabidopsis thaliana. At14a has a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and localises partly to the plasma membrane. Length = 336

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	391
PF05055	336	DUF677: Protein of unknown function (DUF677); Inte	100.0
PF05633	389	DUF793: Protein of unknown function (DUF793); Inte	99.79
PF03087	231	DUF241: Arabidopsis protein of unknown function; I	97.05
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	87.37
PF05055	336	DUF677: Protein of unknown function (DUF677); Inte	84.62
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	81.25
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	80.63

>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants

Probab=100.00  E-value=1.7e-85  Score=652.29  Aligned_cols=288  Identities=39%  Similarity=0.580  Sum_probs=270.1

Q ss_pred             CCchhhHhhhhccCCChHHHHHHHhcc----CCchHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCC
Q 016313           99 NEDSHQLLVSQVLQPNRECVDEALRHA----RPNTLTRLVSTYFDHSENTTNLCLLLHQSIYRARELYAALYELFDIFPS  174 (391)
Q Consensus        99 ~~~s~~~~~~~lLeP~qe~v~~il~~~----k~~~l~~Lv~dYFd~S~~a~d~C~~Llk~I~~aR~~y~~I~~aL~~~~~  174 (391)
                      +.+||+.|+++||||+||++..|++..    ++++|++||++|||+|++||+||++|++||++||.+|++|+++|++|+.
T Consensus        29 s~~s~~~~t~~Lle~~Qevv~~ile~~~di~~~~~L~~Lv~~YFd~S~~a~~~C~~L~k~I~~aR~~~~~I~~al~~~~~  108 (336)
T PF05055_consen   29 SFDSLKEVTECLLEMNQEVVKVILECKKDIWKNPELFRLVSDYFDSSLEASDFCEALLKCIHRARDNYLPIRRALKQFEK  108 (336)
T ss_pred             ChHHHHHHHHHHhCCChHHHHHHHHHHHHhhcChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Confidence            488999999999999999886554332    7899999999999999999999999999999999999999999999998


Q ss_pred             CCCC----cchhhhHHHHHHHHhhhhcCCCCCCC-CCchHHHHHHhhHHHHHHHHHHHHhhhhhhhhhhhhccccccchh
Q 016313          175 DHHS----LSQLQCDKAFEVFLQFDSIDNPFPCP-NSHNFHEMRRCFSELKQQLDRKLRKSHSRVRFFSRATSGSTLCVI  249 (391)
Q Consensus       175 e~~~----~~~~~~~~al~~L~~F~~~~NPFs~~-~~~~Fq~v~~~~ssLL~kL~~~k~K~~rKlk~~r~~~~vS~i~fv  249 (391)
                      +.+.    .++++|++|+++|++|++++|||+++ ++.+||+||++|++||++|+++|+|++||+|++|+|+++|++|||
T Consensus       109 e~~~~d~g~~~~~~~~tl~eL~~F~~~~NPFs~~~~~~~F~~i~~~~~~Ll~kL~~~k~Kl~kklk~~r~~~kvs~v~fv  188 (336)
T PF05055_consen  109 ESLDTDVGVSQKKYDKTLEELKKFKAAGNPFSDEEFFHQFQSIHDQQSSLLEKLDSRKKKLRKKLKLVRTWRKVSNVCFV  188 (336)
T ss_pred             ccccccccccchhHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            8642    45799999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH------HHHHhhccccc--cccchhHHHHHHHH---HHHHHHhhccceehhcccccHHHHHHH
Q 016313          250 GTAVAVTIAAAAVATHA------LVAIVAAPFCT--AYFSPGLAKKQLAH---VAQLDAAKKGIYVLNNDLDTIDRLVAR  318 (391)
Q Consensus       250 aa~~av~i~avviAaha------lagl~a~P~~~--~w~~~~~~kke~al---~~QldaaakGtyIl~~DLDTIsrLV~R  318 (391)
                      +++++|+|+++|+|+||      ++|++++|+++  +|+.++|+||+.++   ++|+|+|+|||||+++||||||+||+|
T Consensus       189 aa~~aV~i~svv~aa~a~~~vv~~aa~~a~P~~~~gkw~~~~~~k~~~al~~~~~~l~~aakGtyI~~~DldTIsrLV~R  268 (336)
T PF05055_consen  189 AAFVAVAIASVVAAAHAVPAVVALAAALAAPIGSVGKWCGSLWKKYEEALKKQKEQLDAAAKGTYILIKDLDTISRLVDR  268 (336)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHccchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhhHHHHHHH
Confidence            99999999999988884      45566789887  59999999998765   466999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016313          319 LYTAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQEI  386 (391)
Q Consensus       319 L~deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~tInrAR~lVLqeI  386 (391)
                      |+|+||||+++|+||++++++++.+++||+||+|++++|++||||||||||+||++|||||++|||+|
T Consensus       269 L~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELeehv~lC~~tInrAR~lVlq~I  336 (336)
T PF05055_consen  269 LEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEEHVYLCFKTINRARTLVLQEI  336 (336)
T ss_pred             HHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999998

This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].

>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development

Probab=99.79  E-value=5.1e-18  Score=171.60  Aligned_cols=244  Identities=18%  Similarity=0.227  Sum_probs=191.1

Q ss_pred             chHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCcchhhhHHHHHHHHhhhhcC--C---C--
Q 016313          128 NTLTRLVSTYFDHSENTTNLCLLLHQSIYRARELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQFDSID--N---P--  200 (391)
Q Consensus       128 ~~l~~Lv~dYFd~S~~a~d~C~~Llk~I~~aR~~y~~I~~aL~~~~~e~~~~~~~~~~~al~~L~~F~~~~--N---P--  200 (391)
                      +.+.+||.+|||.|.|++|+|+++..+|.+.|..|+.++-|++.++.. ...++.++.+|...|.++..+.  +   +  
T Consensus        98 ~~~dk~v~eylD~sVKlLDvCNA~~~gi~~lr~~~~ll~~al~~L~~~-~~~~~~~~rRAr~aL~dl~~~~~~~~~~~~~  176 (389)
T PF05633_consen   98 PPDDKWVDEYLDRSVKLLDVCNAIRDGISQLRQWQLLLQIALHALDSS-RPLGEGQLRRARKALSDLKIAMLDDKDSGSS  176 (389)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCcHHHHHHHHHHHHHHHHHHhcccccCcc
Confidence            458899999999999999999999999999999999999999999877 3578889999999998887411  0   0  


Q ss_pred             --------C----------CC----CCCchHHH------HHHhhHHHHHHHHHHHHhhhhhhhhhhhhcccc-----ccc
Q 016313          201 --------F----------PC----PNSHNFHE------MRRCFSELKQQLDRKLRKSHSRVRFFSRATSGS-----TLC  247 (391)
Q Consensus       201 --------F----------s~----~~~~~Fq~------v~~~~ssLL~kL~~~k~K~~rKlk~~r~~~~vS-----~i~  247 (391)
                              |          ..    .....|++      -.=.++.+|+.|       ...|-.+|+-....     ..+
T Consensus       177 ~~~~rnrs~~r~~~~~~~~~~s~~~~~~~~~rsls~~vsr~wsa~~~Lq~m-------~~nL~~Pk~~esak~~gL~~A~  249 (389)
T PF05633_consen  177 GGSHRNRSFGRSNSSGRRSSSSSGSRSAGHFRSLSWSVSRNWSAARQLQAM-------GENLVLPKGKESAKGRGLLRAM  249 (389)
T ss_pred             cccccccccccccCCCCCCCCccccCCcccchhhhhhhhhhhhhHHHHHHH-------HhcCCCCCCccccccchHHHHH
Confidence                    0          00    01123443      233466777777       66776665543322     238


Q ss_pred             hhHHHHHHHHHHHHHHHHHH--HHH----hhccccccccchhHHHHHHHHHHHHHHhh-ccceehhcccccHHHHHHHHH
Q 016313          248 VIGTAVAVTIAAAAVATHAL--VAI----VAAPFCTAYFSPGLAKKQLAHVAQLDAAK-KGIYVLNNDLDTIDRLVARLY  320 (391)
Q Consensus       248 fvaa~~av~i~avviAahal--agl----~a~P~~~~w~~~~~~kke~al~~Qldaaa-kGtyIl~~DLDTIsrLV~RL~  320 (391)
                      |+..+++|+||.+++||-+-  -|+    .++|--.+|..++.. .+.++.+.++... ||...+.++|+.|.+.|++|+
T Consensus       250 Y~m~~vtvFV~~vlVAA~pc~~rgL~~~l~~vP~~~~WA~s~~~-LQ~rI~eEikkk~~kgs~gLLkEl~~ve~~vr~L~  328 (389)
T PF05633_consen  250 YGMKSVTVFVCWVLVAAFPCQDRGLQVHLSAVPRQFSWAPSFIS-LQERINEEIKKKERKGSCGLLKELQQVEASVRELH  328 (389)
T ss_pred             HHHHHHHHHHHHHHHHeeecCCccccCCCCCCccccccchHHHH-HHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHH
Confidence            99999999999988886642  133    225555589988775 6677888888875 779999999999999999999


Q ss_pred             HHhhhhHHHHHHHHhhCCCcchHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016313          321 TAVEGDKQLVRFGLERGRDKHSIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQE  385 (391)
Q Consensus       321 deIE~~~~~v~fale~~~~~~~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~tInrAR~lVLqe  385 (391)
                      +-++.    ++|.++.++ .+.+++.|+||.+..+.+.+.|+.||.+|+.-|+.|-++|+-+|.-
T Consensus       329 el~d~----~~~p~~~e~-~~ev~~~V~EL~~~~~~L~~GLdpLerqVre~Fh~IV~sR~elLd~  388 (389)
T PF05633_consen  329 ELIDS----FQFPLEEEK-EEEVREAVEELARVCEALSQGLDPLERQVREVFHRIVRSRTELLDS  388 (389)
T ss_pred             HHHHh----ccCCcchhH-HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhHHHHhc
Confidence            77774    357766643 5679999999999999999999999999999999999999998863

Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].

>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function

Probab=97.05  E-value=0.23  Score=47.74  Aligned_cols=41  Identities=15%  Similarity=0.213  Sum_probs=39.1

Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Q 016313          131 TRLVSTYFDHSENTTNLCLLLHQSIYRARELYAALYELFDI  171 (391)
Q Consensus       131 ~~Lv~dYFd~S~~a~d~C~~Llk~I~~aR~~y~~I~~aL~~  171 (391)
                      ..+|++..|.|..-+|+|+.....+-+.+...+-+|.+|..
T Consensus        31 ~k~ve~lLd~sL~LLD~c~~~rd~ll~lKe~v~eLqsalRR   71 (231)
T PF03087_consen   31 EKWVEELLDGSLRLLDACGTFRDALLQLKEHVQELQSALRR   71 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            57999999999999999999999999999999999999976

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=87.37  E-value=5.6  Score=36.68  Aligned_cols=43  Identities=23%  Similarity=0.394  Sum_probs=34.3

Q ss_pred             hHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016313          342 SIQEVVKQLRRNQQNFTDQLKDLEEHICLCFNTVNRARSLLLQ  384 (391)
Q Consensus       342 ~vkevv~eLkk~~~~f~~qLeELEEhv~lCf~tInrAR~lVLq  384 (391)
                      .++.-+++|.+....+.+.+..++|--..-+..++|||.+++-
T Consensus       115 ~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~~~  157 (161)
T TIGR02894       115 SLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLAVV  157 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3555677777777777777777788888999999999998864

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants

Probab=84.62  E-value=51  Score=33.80  Aligned_cols=23  Identities=17%  Similarity=0.237  Sum_probs=11.4

Q ss_pred             hHHHHHHhhHHHHHHHHHHHHhh
Q 016313          208 NFHEMRRCFSELKQQLDRKLRKS  230 (391)
Q Consensus       208 ~Fq~v~~~~ssLL~kL~~~k~K~  230 (391)
                      ++.++.++..+..+|++++.+.+
T Consensus       154 ~~~~Ll~kL~~~k~Kl~kklk~~  176 (336)
T PF05055_consen  154 QQSSLLEKLDSRKKKLRKKLKLV  176 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555554444443

This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=81.25  E-value=64  Score=32.50  Aligned_cols=21  Identities=19%  Similarity=0.365  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHHH
Q 016313          146 NLCLLLHQSIYRARELYAALY  166 (391)
Q Consensus       146 d~C~~Llk~I~~aR~~y~~I~  166 (391)
                      ..|..|.+.|.+.|....-+.
T Consensus        75 ~~c~EL~~~I~egr~~~~~~E   95 (325)
T PF08317_consen   75 FSCRELKKYISEGRQIFEEIE   95 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999987765554

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=80.63  E-value=27  Score=31.86  Aligned_cols=19  Identities=26%  Similarity=0.492  Sum_probs=7.1

Q ss_pred             HHHhhccceehhcccccHH
Q 016313          295 LDAAKKGIYVLNNDLDTID  313 (391)
Q Consensus       295 ldaaakGtyIl~~DLDTIs  313 (391)
                      ++....-.+.+..+++...
T Consensus        97 l~~l~~~~~~~~~~l~~~~  115 (191)
T PF04156_consen   97 LDQLQERIQELESELEKLK  115 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	391
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 6e-05
 Identities = 47/331 (14%), Positives = 90/331 (27%), Gaps = 128/331 (38%)

Query: 81  HHNHDHDEVQM-QIEHINGNEDSHQLLVSQVLQP----NREC--VDEALRHARPNTLTRL 133
           HH+H H + +  + ++    +D     +  V +     N +C  V +  +         L
Sbjct: 1   HHHHHHMDFETGEHQY--QYKD-----ILSVFEDAFVDNFDCKDVQDMPKSI-------L 46

Query: 134 VSTYFDHSENTTNLCLLLHQSIYRARELYAALYELFDIFPSDHHSLSQLQCDKAFEVFLQ 193
                DH              I  +++  +    LF                K  E+  +
Sbjct: 47  SKEEIDH--------------IIMSKDAVSGTLRLFWTL-----------LSKQEEMVQK 81

Query: 194 F----DSIDNPF-----------PCPNSHNFHEMR------------------RCFSELK 220
           F      I+  F           P   +  + E R                  + + +L+
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141

Query: 221 QQLDRKLRKSHSRVRFFSRATSG-STLCVIGTAVAVTIAAAAVATHALVAIVAAPFCTAY 279
           Q L  +LR     V       SG + +           A     ++ +       F    
Sbjct: 142 QAL-LELR-PAKNVLIDGVLGSGKTWV-----------ALDVCLSYKVQC--KMDF---- 182

Query: 280 FSPGLAKKQLAHVAQLDAAKKGIYVLN----NDLDTIDRLVARLYTAVEGDKQLVRFGLE 335
                                 I+ LN    N  +T+  ++ +L   +  D         
Sbjct: 183 ---------------------KIFWLNLKNCNSPETVLEMLQKLLYQI--DPNWTSRSDH 219

Query: 336 RGRDKHSIQEVVKQLRR--NQQNFTDQLKDL 364
               K  I  +  +LRR    + + + L  L
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 47/410 (11%), Positives = 112/410 (27%), Gaps = 108/410 (26%)

Query: 50  NLTQEYSNTVQTNSYNEMWSKIHV--LDPNN-----INHHNHDHDEVQMQIE-HINGNED 101
            + Q++   V   +Y  + S I      P+      I   +  +++ Q+  + +++  + 
Sbjct: 77  EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136

Query: 102 SHQL-------------------------LVSQVLQ--------PN--------RECVDE 120
             +L                         +   V                         E
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 121 ALRHARPNTLTRLVSTYFDHSENTTNLCLLLHQSIYRARELYA------ALYELFDIFPS 174
            +       L ++   +   S++++N+ L +H      R L         L  L ++  +
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 175 DHHSLSQLQC-------DKAFEVFLQFDSIDNPFPCPNSHNFHEMRRCFSELKQQLDRKL 227
              +   L C        K    FL   +  +     +S           E+K  L + L
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-----DEVKSLLLKYL 311

Query: 228 RKSHSRVRFFSRATSGSTLCVIGTAVAVTIAAAAVATHALVAIVAAPFCTAYFSPGLAKK 287
                 +       + +          ++I A ++              T      +   
Sbjct: 312 DCRPQDLP--REVLTTNPR-------RLSIIAESIRDGL---------ATWDNWKHVNCD 353

Query: 288 QLAH-----VAQLDAAK-KGIY----VLNNDLDTIDRLVARLYTAVEGD------KQLVR 331
           +L       +  L+ A+ + ++    V          L++ ++  V          +L +
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 332 FGL-ERGRDK-----HSIQEVVKQLRRNQQNFTDQLKD-LEEHICLCFNT 374
           + L E+   +      SI   +K    N+      + D          + 
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00