Citrus Sinensis ID: 016329

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
Protein Sequence
MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDERLDINKSVPGLSSTKKEARQAEKLTTEGPRPGEKFKQIREQEARRRQQREEEKRKAAEAAAKGNQTINGEQEREASILGSAKGVQTDLVDKDDENFPSVTGDNASNIGVAINGNISSHEFKENQDTISVFRTGDNEVSANSEVDGRNEQQSQENLGKEGLEVHARSATTDDKLSEEETHEARRQQ
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHccccccHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccHHHcccccccccEEEEEEEEccccccccHHcccccccc
Coil and Loop (DISEMBL)
MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLaginplagclptlatIPVWIGLYRALSnvadeglltegffwipslagpttiaarqngsgiswlfpfvdghpplgwsdtfAYLVLPVLLVVSQYISVKIIQssqnndpnmkssQALTNFLPLMIGYFAlsvpsglslyWFTNNLLSTAQQVWLQKfggakdpmkqfSDIIKDErldinksvpglsstkKEARQAEklttegprpgekFKQIREQEARRRQQREEEKRKAAEAAAKgnqtingeQEREASILGsakgvqtdlvdkddenfpsvtgdnasnigvaingnisshefkenqdTISVFrtgdnevsansevdgrneqqSQENLGKEGLEVharsattddklseEETHEARRQQ
Flexible Loop (DISEMBL)
MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIqssqnndpnmKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIikderldinksvpglsstkkearqaeklttegprpgekfkqIREQEARRRQQREEEKRKAAeaaakgnqtingeqerEASILGSAKGVQTDLVDKDDENfpsvtgdnasnigVAINGNISSHEFKENQDTISVFRTGDNEVsansevdgrneqQSQENLGKEGLEVHArsattddklseeethearrqq
Low Complexity Region (SEG)
MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDERLDINKSVPGLSSTKKEARQAEKLTTEGPRPGEKFKQIreqearrrqqreeekrkaaeaaakGNQTINGEQEREASILGSAKGVQTDLVDKDDENFPSVTGDNASNIGVAINGNISSHEFKENQDTISVFRTGDNEVSANSEVDGRNEQQSQENLGKEGLEVHARSATTDDKLSEEETHEARRQQ
Disordered region (IsUnstruct)
*********************ERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQ*************ALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAK********I***************************************************************************************************************GVAI**************************************************************************
Disordered Region (DISOPRED)
MAMRSLAPQVKAIQERYAGDQ*RIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYI********************LTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGA*******************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDERLDINKSVPGL*****************PRPGEKFKQI***********************************EASILGSAKGVQTDLVDKDDENFPSVTGDNASNIGVAINGNISSHEFKENQDTISVFRTGDNE*******************GKEGLEVHA*********************
Disordered Region (DISPRO)
MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGA************************************************FKQIREQEARRRQQREEEK********************************************************************************************************EGLEVHARSATTDDK*************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDERLDINKSVPGLSSTKKEARQAEKLTTEGPRPGEKFKQxxxxxxxxxxxxxxxxxxxxxxxAKGNQTINGEQEREASILGSAKGVQTDLVDKDDENFPSVTGDNASNIGVAINGNISSHEFKENQDTISVFRTGDNEVSANSEVDGRNEQQSQENLGKEGLEVHARSATTDDKLSEEETHEARRQQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	391	2.2.26 [Sep-21-2011]
Q9FYL3	499	ALBINO3-like protein 1, c	yes	no	0.867	0.679	0.607	1e-115
Q8LBP4	462	Inner membrane protein AL	no	no	0.616	0.521	0.629	1e-92
Q9FY06	442	Inner membrane protein PP	N/A	no	0.675	0.597	0.583	5e-91
Q8LKI3	422	Inner membrane ALBINO3-li	N/A	no	0.465	0.431	0.652	1e-69
Q8S339	495	Inner membrane ALBINO3-li	N/A	no	0.521	0.412	0.521	2e-58
A0LLH3	553	Membrane protein insertas	yes	no	0.411	0.291	0.331	6e-21
B3QLY4	587	Membrane protein insertas	yes	no	0.414	0.275	0.309	7e-21
A1AV44	542	Membrane protein insertas	yes	no	0.414	0.298	0.331	8e-21
B0UHI1	624	Membrane protein insertas	yes	no	0.445	0.278	0.340	2e-20
B3QYV6	586	Membrane protein insertas	yes	no	0.419	0.279	0.327	2e-20

>sp|Q9FYL3|ALB31_ARATH ALBINO3-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=ALB3L1 PE=2 SV=3

 Score =  415 bits (1067), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/362 (60%), Positives = 274/362 (75%), Gaps = 23/362 (6%)

Query: 1   MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 60
           MAM+SL PQ+KAIQERYAGDQE+IQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL
Sbjct: 151 MAMKSLTPQIKAIQERYAGDQEKIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 210

Query: 61  SNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPV 120
           SNVADEGLLTEGFFWIPSLAGPTT+AARQNGSGISWLFPF++GHPPLGW DT AYLVLP+
Sbjct: 211 SNVADEGLLTEGFFWIPSLAGPTTVAARQNGSGISWLFPFIEGHPPLGWPDTLAYLVLPL 270

Query: 121 LLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLST 180
           LLV SQY+S++I+QSSQ+NDP MKSSQA+T  LPLMIGYFALSVPSGLSLYW TNN+LST
Sbjct: 271 LLVFSQYLSIQIMQSSQSNDPAMKSSQAVTKLLPLMIGYFALSVPSGLSLYWLTNNILST 330

Query: 181 AQQVWLQKFGGAKDPMKQFSDII----KDERLDINKSVPGLSSTKKEA-----RQAEKLT 231
           AQQVWLQK+GGAK+P+++F++++    K ++++ + S P +  +  E      +  EK+T
Sbjct: 331 AQQVWLQKYGGAKNPVEKFTNLVTKEDKTQQIEKSFSEPLVQKSVSELKIPREKGGEKVT 390

Query: 232 TEGPRPGEKFKQIREQEARRRQQREEEKRKAAEAAAKGNQTINGEQEREASILGSAKGVQ 291
            E P+PGE+F+ ++EQEA+RR  RE+E+R+ AEAA     T    ++ E S         
Sbjct: 391 PECPKPGERFRLLKEQEAKRR--REKEERQKAEAALSNQNTDKAHEQDEKS--------D 440

Query: 292 TDLVDKDDENFPSVTGDNASNIGVAINGNISSHEFKENQDTISVFRTG-DNEVSANSEVD 350
           T +V +DD+       D  S+  VA+NG  S    ++++ T   F  G D E   + E +
Sbjct: 441 TAIVAEDDKKTELSAVDETSDGTVAVNGKPS---IQKDETTNGTFGIGHDTEQQHSHETE 497

Query: 351 GR 352
            R
Sbjct: 498 KR 499

Probably required for the insertion of integral membrane proteins into the chloroplast thylakoid membranes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBP4|ALB3_ARATH Inner membrane protein ALBINO3, chloroplastic OS=Arabidopsis thaliana GN=ALB3 PE=1 SV=2

 Score =  340 bits (872), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 163/259 (62%), Positives = 202/259 (77%), Gaps = 18/259 (6%)

Query: 1   MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 60
           +AM++L P++KAIQ+RYAG+QERIQLET+RLYK AG+NPLAGCLPTLATIPVWIGLY+AL
Sbjct: 167 LAMQNLQPKIKAIQQRYAGNQERIQLETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQAL 226

Query: 61  SNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPV 120
           SNVA+EGL TEGFFWIPSL GPT+IAARQ+GSGISWLFPFVDGHPPLGW DT AYLVLPV
Sbjct: 227 SNVANEGLFTEGFFWIPSLGGPTSIAARQSGSGISWLFPFVDGHPPLGWYDTVAYLVLPV 286

Query: 121 LLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLST 180
           LL+ SQY+S++I++  Q +DP  K++  +  FLPLMIGYFALSVPSGLS+YW TNN+LST
Sbjct: 287 LLIASQYVSMEIMKPPQTDDPAQKNTLLVFKFLPLMIGYFALSVPSGLSIYWLTNNVLST 346

Query: 181 AQQVWLQKFGGAKDPMKQFSDIIKDERLDINKSVPGLSSTKKEARQAEKLTTEGPRPGEK 240
           AQQV+L+K GGAK  M        DE           +S    A +A++   +    GE+
Sbjct: 347 AQQVYLRKLGGAKPNM--------DEN----------ASKIISAGRAKRSIAQPDDAGER 388

Query: 241 FKQIREQEARRRQQREEEK 259
           F+Q++EQE R ++ +   K
Sbjct: 389 FRQLKEQEKRSKKNKAVAK 407

Required for the insertion of some light harvesting chlorophyll-binding proteins (LHCP) into the chloroplast thylakoid membrane. Required for the insertion of LHCB1, LHCB4.1 and LHCB5 proteins into thylakoid membrane, while it is not required for insertion of proteins PsbX, PsbW and PsbY.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FY06|PPF1_PEA Inner membrane protein PPF-1, chloroplastic OS=Pisum sativum GN=PPF-1 PE=2 SV=2

 Score =  335 bits (858), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 167/286 (58%), Positives = 220/286 (76%), Gaps = 22/286 (7%)

Query: 1   MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 60
           +AM++L P++KAIQERYAG+QERIQLET+RLY  AG+NPLAGCLPTLATIPVWIGLY+AL
Sbjct: 145 LAMQNLQPKIKAIQERYAGNQERIQLETSRLYTQAGVNPLAGCLPTLATIPVWIGLYQAL 204

Query: 61  SNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPV 120
           SNVA+EGLLTEGF WIPSL GPT+IAARQ+GSGISWLFPFVDGHP LGW DT AYLVLPV
Sbjct: 205 SNVANEGLLTEGFLWIPSLGGPTSIAARQSGSGISWLFPFVDGHPLLGWYDTAAYLVLPV 264

Query: 121 LLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLST 180
           LL+VSQY+S++I++  Q NDPN K++  +  FLPLMIGYF+LSVPSGL++YWFTNN+LST
Sbjct: 265 LLIVSQYVSMEIMKPPQTNDPNQKNTLLIFKFLPLMIGYFSLSVPSGLTIYWFTNNVLST 324

Query: 181 AQQVWLQKFGGAKDPMKQFSDIIKDERLDINKSVPGLSSTKKEARQAEKLTTEGPRPGEK 240
           AQQVWL+K GGAK                +N++  G+ +    A QA++  ++  + GE+
Sbjct: 325 AQQVWLRKLGGAKP--------------AVNENAGGIIT----AGQAKRSASKPEKGGER 366

Query: 241 FKQIREQEARRRQQR----EEEKRKAAEAAAKGNQTINGEQEREAS 282
           F+Q++E+E +++  +    EE +  A+ +A+     +   +E+E +
Sbjct: 367 FRQLKEEEKKKKLIKALPVEEVQPLASASASNDGSDVENNKEQEVT 412

May be required for the insertion of some integral membrane proteins into the chloroplast thylakoid membrane. May play a role in inhibiting senescence.

Pisum sativum (taxid: 3888)

>sp|Q8LKI3|ALB32_CHLRE Inner membrane ALBINO3-like protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.2 PE=2 SV=1

 Score =  263 bits (673), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 122/187 (65%), Positives = 150/187 (80%), Gaps = 5/187 (2%)

Query: 1   MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 60
           +++++L P+VK +Q +YA D E +QLETARLYK AG+NPLAGC PTLATIPV+IGLY AL
Sbjct: 128 LSLQALQPRVKELQAKYADDPENLQLETARLYKEAGVNPLAGCFPTLATIPVFIGLYNAL 187

Query: 61  SNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPV 120
           SN A EGLLTEGFFWIPSL GPTTI     G G+ WL PF +G PP+GW++  AYLV+PV
Sbjct: 188 SNAAKEGLLTEGFFWIPSLGGPTTI-----GGGLEWLVPFENGAPPVGWANAAAYLVMPV 242

Query: 121 LLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLST 180
           LLV SQY S KII S  N DP+ + +QA+  FLPLMIG+F+L+VPSGL+LYWF NNLLST
Sbjct: 243 LLVASQYASQKIISSQNNQDPSQQQAQAILKFLPLMIGWFSLNVPSGLTLYWFVNNLLST 302

Query: 181 AQQVWLQ 187
            QQ++L+
Sbjct: 303 GQQLYLK 309

Required for the insertion of some light-harvesting complexes (LHC) proteins into the chloroplast thylakoid membrane. Essential for the assembly and activity of LHC I and II. Its function is probably partly distinct from that of ALB3.1.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q8S339|ALB31_CHLRE Inner membrane ALBINO3-like protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.1 PE=3 SV=1

 Score =  226 bits (577), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 108/207 (52%), Positives = 155/207 (74%), Gaps = 3/207 (1%)

Query: 1   MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 60
           MA+++L P++  I++R+  D+++IQ ET+ LY+ AG+NPLAGCLPTLATIP++IGL+ +L
Sbjct: 168 MAVQALKPRIDLIKDRFGEDKDKIQKETSVLYEQAGVNPLAGCLPTLATIPIFIGLFSSL 227

Query: 61  SNVADEGLL-TEGFFWIPSLAGPTTIAARQNGSGISWLFPF-VDGHPPLGWSDTFAYLVL 118
           +NVA++GLL T+GF+++PSLAGPTT+A RQ+G G SWL+P   DG PP+GW D  AYL L
Sbjct: 228 TNVANDGLLDTQGFYFVPSLAGPTTMAMRQSGLGTSWLWPLGPDGAPPIGWEDAAAYLTL 287

Query: 119 PVLLVVSQYISVKIIQSSQN-NDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNL 177
           P+LLV  QY S  +     +  D N  + +AL  FLPLM+G+F+L+VP+GLSLY+  N +
Sbjct: 288 PLLLVAVQYASSSVTSPPIDPKDENANTQRALLVFLPLMVGWFSLNVPAGLSLYYLANTV 347

Query: 178 LSTAQQVWLQKFGGAKDPMKQFSDIIK 204
           LS+A Q++L+K GGA   M +   + K
Sbjct: 348 LSSAIQIYLKKLGGANVVMNELGPVTK 374

Required for the insertion of some light-harvesting complexes (LHC) proteins into the chloroplast thylakoid membrane. Essential for the assembly and activity of LHC I and II. Its function is probably partly distinct from that of ALB3.2.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|A0LLH3|YIDC_SYNFM Membrane protein insertase YidC OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=yidC PE=3 SV=1

 Score =  102 bits (254), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 96/187 (51%), Gaps = 26/187 (13%)

Query: 3   MRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSN 62
           M+ + P++  I+E+Y GD+E++  E   LY+   +NP+ GCLP L  IPV+  LYR L+ 
Sbjct: 390 MKKIQPKMTQIREKYKGDREKMNQELMGLYRTYKVNPMGGCLPMLLQIPVFFALYRMLNG 449

Query: 63  VADEGLLTEGF-FWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVL 121
             +  L  E F  WI  L  P  +        I +  P++ G P           VL +L
Sbjct: 450 AVE--LRHEPFMLWIDDLTAPDRLP-------IGFDIPYLGGLP-----------VLTLL 489

Query: 122 LVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTA 181
           + ++ +I  K+  S+   DP       +   +P+M   F ++ PSGL LYW  NN+LS A
Sbjct: 490 MGITMFIQQKMTPSA--GDPR---QDQIMMIMPVMFTVFFVNFPSGLVLYWLVNNVLSIA 544

Query: 182 QQVWLQK 188
           QQ W+ +
Sbjct: 545 QQYWVNR 551

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) (taxid: 335543)

>sp|B3QLY4|YIDC_CHLP8 Membrane protein insertase YidC OS=Chlorobaculum parvum (strain NCIB 8327) GN=yidC PE=3 SV=1

 Score =  102 bits (253), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 22/184 (11%)

Query: 3   MRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSN 62
           M +L P +K IQE+Y  D  ++Q E  R+YK AG+NPL GCLPT+  +P+   ++    +
Sbjct: 393 MSALQPMMKEIQEKYKNDPAKLQSELGRIYKEAGVNPLGGCLPTVIQMPLLFAMFYVFRS 452

Query: 63  VADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLL 122
                L   GF W+  L+ P +I          +  P    H  L          +P+L+
Sbjct: 453 SIQ--LRQHGFLWVKDLSVPDSIL------DFGFKLPLYGDHIAL----------MPILM 494

Query: 123 VVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQ 182
            V+ +   KI  ++Q ND      + +    P M+  F  ++PSGL+LY+   N+ S AQ
Sbjct: 495 AVTVFFQQKITPTTQTND----QMKIMIWMFPAMMLLFFNNMPSGLALYYLMFNVFSIAQ 550

Query: 183 QVWL 186
           Q ++
Sbjct: 551 QAYI 554

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Chlorobaculum parvum (strain NCIB 8327) (taxid: 517417)

>sp|A1AV44|YIDC_PELPD Membrane protein insertase YidC OS=Pelobacter propionicus (strain DSM 2379) GN=yidC PE=3 SV=1

 Score =  101 bits (252), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 96/187 (51%), Gaps = 25/187 (13%)

Query: 3   MRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSN 62
           M+ + P + A++E+Y  D+E +      LY+   +NPL GCLP L  IPV+  LY+AL  
Sbjct: 378 MQKIQPMMAALKEKYKDDREGMNKAVMELYRDHKVNPLGGCLPMLVQIPVFFALYKALM- 436

Query: 63  VADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLL 122
            + E      +FWI  L+GP  +  +  G       PFV G              LP+L+
Sbjct: 437 FSIELRHAPFYFWITDLSGPDNLFGQMLG------LPFVIGP-------------LPLLM 477

Query: 123 VVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQ 182
             + +I  K+  S+   DP M++   L   LP++  +  L+ PSGL LYW  NN+L+  Q
Sbjct: 478 GATMFIQQKMTPSTM--DP-MQAKMMLA--LPVVFTFMFLNFPSGLVLYWLLNNILTIGQ 532

Query: 183 QVWLQKF 189
           Q+++ K 
Sbjct: 533 QMYINKL 539

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Pelobacter propionicus (strain DSM 2379) (taxid: 338966)

>sp|B0UHI1|YIDC_METS4 Membrane protein insertase YidC OS=Methylobacterium sp. (strain 4-46) GN=yidC PE=3 SV=1

 Score =  100 bits (249), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 17/191 (8%)

Query: 3   MRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSN 62
           M+++ P++ AI+ERYA D+ + Q     LYK   INP+AGC P L  IPV+  LY+ L  
Sbjct: 429 MKAVQPEMTAIRERYADDKVKQQQAMMELYKKEKINPVAGCWPVLIQIPVFFSLYKVLF- 487

Query: 63  VADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLL 122
           V  E      F WI  LA P       + + I  LF  +   PP    D     V P+++
Sbjct: 488 VTIEMRHAPFFGWIRDLAAP-------DPTSIVNLFGLLPFTPP----DLLHLGVWPIVM 536

Query: 123 VVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQ 182
            ++ ++ +K+        P+   +Q  T F+P++  +   S P+GL +YW  NNLLS  Q
Sbjct: 537 GITMFLQMKM----NPAPPDPVQAQVFT-FMPIIFTFMLGSFPAGLVIYWAWNNLLSILQ 591

Query: 183 QVWLQKFGGAK 193
           Q W+ +  G K
Sbjct: 592 QYWIMRRNGVK 602

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Methylobacterium sp. (strain 4-46) (taxid: 426117)

>sp|B3QYV6|YIDC_CHLT3 Membrane protein insertase YidC OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=yidC PE=3 SV=1

 Score =  100 bits (249), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 96/186 (51%), Gaps = 22/186 (11%)

Query: 3   MRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSN 62
           M +L PQ+KAIQE+Y  + E++Q E + +Y+ AG+NPL GCLPT+  +P+   ++    +
Sbjct: 399 MAALQPQLKAIQEQYKDNPEKLQAEISGIYREAGVNPLGGCLPTVIQMPLLFAMFYVFRS 458

Query: 63  VADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLL 122
                L  EGF W   L+ P +I        + +  P    H            V+P+L+
Sbjct: 459 SIQ--LRQEGFLWSNDLSVPDSIL------DLPFSIPLYGDHVS----------VIPILM 500

Query: 123 VVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQ 182
            V+ +   K+  S+Q ND  MK    L    P M+  F  ++PSGL LY+   N+ S AQ
Sbjct: 501 GVAVFFQQKLTPSTQTND-QMKFMMYL---FPGMMLIFFNNMPSGLGLYYLMFNVFSIAQ 556

Query: 183 QVWLQK 188
           Q ++ +
Sbjct: 557 QFYINQ 562

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Chloroherpeton thalassium (strain ATCC 35110 / GB-78) (taxid: 517418)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
225424558	539	PREDICTED: ALBINO3-like protein 1, chlor	0.984	0.714	0.702	1e-143
147772782	623	hypothetical protein VITISV_036218 [Viti	0.984	0.617	0.659	1e-138
356569211	534	PREDICTED: ALBINO3-like protein 1, chlor	0.948	0.694	0.633	1e-123
255547956	499	conserved hypothetical protein [Ricinus	0.831	0.651	0.686	1e-120
343171890	458	ALBINO3-like protein, partial [Silene la	0.769	0.657	0.656	1e-117
356540205	543	PREDICTED: ALBINO3-like protein 1, chlor	0.956	0.688	0.641	1e-117
343171892	458	ALBINO3-like protein, partial [Silene la	0.769	0.657	0.65	1e-115
449450415	506	PREDICTED: ALBINO3-like protein 1, chlor	0.879	0.679	0.629	1e-115
9743337	519	F21J9.16 [Arabidopsis thaliana]	0.867	0.653	0.607	1e-113
240254150	499	ALBINO3-like protein 1 [Arabidopsis thal	0.867	0.679	0.607	1e-113

>gi|225424558|ref|XP_002282031.1| PREDICTED: ALBINO3-like protein 1, chloroplastic [Vitis vinifera] gi|296081405|emb|CBI16838.3| unnamed protein product [Vitis vinifera]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 276/393 (70%), Positives = 316/393 (80%), Gaps = 8/393 (2%)

Query: 1   MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 60
           MAMRSL PQ+KAIQ+RYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL
Sbjct: 146 MAMRSLQPQIKAIQQRYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 205

Query: 61  SNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPV 120
           SNVADEGLLTEGFFWIPSL+GPTTIAARQNGSGISWLFPFVDGHPPLGWSDT AYLVLP+
Sbjct: 206 SNVADEGLLTEGFFWIPSLSGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTLAYLVLPM 265

Query: 121 LLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLST 180
           LL+VSQYISV+I+QSSQ+NDP++K+SQALT FLPLMIGYFALSVPSGLSLYWFTNN+LST
Sbjct: 266 LLIVSQYISVQIMQSSQSNDPSLKTSQALTKFLPLMIGYFALSVPSGLSLYWFTNNILST 325

Query: 181 AQQVWLQKFGGAKDPMKQFSDIIKDERLD-INKSVPGLSSTKKEARQAEKLTTEGPRPGE 239
           AQQVWLQK GGA+ P+KQFSD I+ E L  I K V  ++STKKE +Q EKLT+EG RPGE
Sbjct: 326 AQQVWLQKLGGAQIPVKQFSDDIEKEELSQIQKPVFEINSTKKEPKQTEKLTSEGLRPGE 385

Query: 240 KFKQIREQEARRRQQREEEKRKAAEAAAKGNQTINGEQEREASILGSAKGVQTDLVDKDD 299
           +FKQI+EQEARRRQQREEEK KA EAAA    T NG  + EA+          DLVD  +
Sbjct: 386 RFKQIKEQEARRRQQREEEKTKAEEAAANRIPTTNGGYKNEANSTKREYRTGGDLVDGGN 445

Query: 300 ENFPSV-TGDNASNIGVAINGNISSHEFKENQDTISVFRTGDNEVSANSEVDGRNEQQSQ 358
           ++F S+ T  N+SNI V +N  +S+ + K+ Q  + V RT  +E S N EVD R+EQ   
Sbjct: 446 DSFQSLTTTHNSSNIEVVVNDELSNEDSKDEQK-MYVTRTESSENSVNYEVDVRDEQHIN 504

Query: 359 ENLGKEGLEVHARSATTDDKLSEEETHEARRQQ 391
             L KE +EV      TD+K S EET + RR+Q
Sbjct: 505 GKLEKEVIEV-----CTDNKPSGEETLQPRREQ 532

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772782|emb|CAN71675.1| hypothetical protein VITISV_036218 [Vitis vinifera]

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 275/417 (65%), Positives = 315/417 (75%), Gaps = 32/417 (7%)

Query: 1   MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 60
           MAMRSL PQ+KAIQ+RYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL
Sbjct: 206 MAMRSLQPQIKAIQQRYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 265

Query: 61  SNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPV 120
           SNVADEGLLTEGFFWIPSL+GPTTIAARQNGSGISWLFPFVDGHPPLGWSDT AYLVLP+
Sbjct: 266 SNVADEGLLTEGFFWIPSLSGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTLAYLVLPM 325

Query: 121 LLVVSQYISVKIIQS------------------------SQNNDPNMKSSQALTNFLPLM 156
           LL+VSQYISV+I+QS                        SQ+NDP++K+SQALT FLPLM
Sbjct: 326 LLIVSQYISVQIMQSSQQWELLGHLKGVPKLELETMIGLSQSNDPSLKTSQALTKFLPLM 385

Query: 157 IGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDERLD-INKSVP 215
           IGYFALSVPSGLSLYWFTNN+LSTAQQVWLQK GGA+ P+KQFSD I+ E L  I K V 
Sbjct: 386 IGYFALSVPSGLSLYWFTNNILSTAQQVWLQKLGGAQIPVKQFSDDIEKEELSQIQKPVF 445

Query: 216 GLSSTKKEARQAEKLTTEGPRPGEKFKQIREQEARRRQQREEEKRKAAEAAAKGNQTING 275
            ++STKKE +Q EKLT+EG RPGE+FKQI+EQEARRRQQREEEK KA EAAA    T NG
Sbjct: 446 EINSTKKEPKQTEKLTSEGLRPGERFKQIKEQEARRRQQREEEKTKAEEAAANRIPTTNG 505

Query: 276 EQEREASILGSAKGVQTDLVDKDDENFPSV-TGDNASNIGVAINGNISSHEFKENQDTIS 334
             + EA+          DLVD  +++F S+ T  N+S I V +N  +S+ + K+ Q  + 
Sbjct: 506 GYKNEANSTKREYRTGGDLVDGGNDSFQSLTTTHNSSXIEVVVNDELSNEDSKDEQK-MY 564

Query: 335 VFRTGDNEVSANSEVDGRNEQQSQENLGKEGLEVHARSATTDDKLSEEETHEARRQQ 391
           V RT  +E S N EVD R+EQ     L KE +EV      TD+K S EET + RR+Q
Sbjct: 565 VTRTESSENSVNYEVDVRDEQHINGKLEKEVIEV-----CTDNKPSGEETLQPRREQ 616

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569211|ref|XP_003552798.1| PREDICTED: ALBINO3-like protein 1, chloroplastic-like [Glycine max]

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/390 (63%), Positives = 301/390 (77%), Gaps = 19/390 (4%)

Query: 1   MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 60
           +AMR+L PQVKAIQ++YAGDQERIQLETARLYKLA INPLAGCLPTLATIPVWIGLYRAL
Sbjct: 160 LAMRTLQPQVKAIQQQYAGDQERIQLETARLYKLANINPLAGCLPTLATIPVWIGLYRAL 219

Query: 61  SNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPV 120
           SNVADEGLLTEGFFWIPSLAGPTT+AARQNGSGISW+FPFVDGHPPLGWSDT AYLVLPV
Sbjct: 220 SNVADEGLLTEGFFWIPSLAGPTTVAARQNGSGISWIFPFVDGHPPLGWSDTLAYLVLPV 279

Query: 121 LLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLST 180
           LL+VSQYISV+I+QSSQ NDPNMKSSQALT  LPLMIGYFALSVPSGLSLYW TNN+LST
Sbjct: 280 LLIVSQYISVQIMQSSQPNDPNMKSSQALTKVLPLMIGYFALSVPSGLSLYWLTNNILST 339

Query: 181 AQQVWLQKFGGAKDPMKQF-SDIIKDERLDINKSVPGLSSTK-KEARQAEKLTTEGPRPG 238
           AQQVWLQK GGAK+P++Q   DI+K++   + KS+  L+STK +EARQ+EK T+EGP+PG
Sbjct: 340 AQQVWLQKLGGAKNPVRQVPDDIMKNDLTQVQKSISKLNSTKAEEARQSEK-TSEGPQPG 398

Query: 239 EKFKQIREQEARRRQQREEEKR--KAAEAAAKGNQTINGEQEREASILGSAKGVQTDLVD 296
           E+FK I+EQEARRRQ++EEE++  +AA   AK ++T     E      G     ++  V 
Sbjct: 399 ERFKLIKEQEARRRQRKEEERKALEAAARKAKIDETFEKTVEEGNQTGGDLVVEKSRFVA 458

Query: 297 KDDENFPSVTGDNASNIGVAINGNISSHEFKENQDTISVFRTGDNEVSANSEVDGRNEQQ 356
            D +  PS++G         +NGN  S + + NQ++ S+  T +N+ SA+      N + 
Sbjct: 459 SDTD--PSISG--------VVNGNPLSKDLEGNQNSTSISETENNDGSAHF----NNVEI 504

Query: 357 SQENLGKEGLEVHARSATTDDKLSEEETHE 386
           +++NL KE  EV   +  T+ +   EET +
Sbjct: 505 NEKNLDKEPREVLTTTTATNKQPPAEETKD 534

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547956|ref|XP_002515035.1| conserved hypothetical protein [Ricinus communis] gi|223546086|gb|EEF47589.1| conserved hypothetical protein [Ricinus communis]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/367 (68%), Positives = 279/367 (76%), Gaps = 42/367 (11%)

Query: 1   MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 60
           MAMRSL PQ+KAIQ++YAG+QE+IQLETARLYKLAGINP AGCLPTLATIPVWIGLYRAL
Sbjct: 162 MAMRSLQPQIKAIQQQYAGNQEKIQLETARLYKLAGINPFAGCLPTLATIPVWIGLYRAL 221

Query: 61  SNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPV 120
           SNVADEGLLTEGFFWIPSLAGPTT+AARQNGSGISWLFPFVDGHPPLGW DTFAYLVLPV
Sbjct: 222 SNVADEGLLTEGFFWIPSLAGPTTVAARQNGSGISWLFPFVDGHPPLGWYDTFAYLVLPV 281

Query: 121 LLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLST 180
           LLVVSQYISV+I+QSSQNNDPNMKSSQA+T  LPLMIGYFALSVPSGLSLYW TNN+LST
Sbjct: 282 LLVVSQYISVQIMQSSQNNDPNMKSSQAITQLLPLMIGYFALSVPSGLSLYWLTNNILST 341

Query: 181 AQQVWLQKFGGAKDPMKQFSDIIKDER----LDINKSVPGLSSTKKEARQAEKLTTEGPR 236
           AQQVWLQK GGAK+P+ Q  D ++ ++    L + KSV  L STK +A Q EKLT EG R
Sbjct: 342 AQQVWLQKLGGAKNPVSQ-EDHLRVQKSVDQLQVQKSVSELDSTKAKAIQVEKLTPEGLR 400

Query: 237 PGEKFKQIREQEARRRQQREEEKRKAAEAAAKGNQTINGE---QEREASILGSAKGVQTD 293
           PGE+FKQ++EQEA+R+QQREEEKRKA EAAA  +QT NG     ERE        GV   
Sbjct: 401 PGERFKQLKEQEAKRKQQREEEKRKAEEAAAISSQTANGSLHASERE-------NGVSMS 453

Query: 294 LVDKDDENFPSVTGDNASNIGVAINGNISSHEFKENQDTISVFRTGDNEVSANSEVDGRN 353
             D  D+ F      ++S  GV ING IS                       NSE  GR 
Sbjct: 454 GADVVDDKF----AHDSSAAGVIINGEIS-----------------------NSESSGRV 486

Query: 354 EQQSQEN 360
           EQQS EN
Sbjct: 487 EQQSDEN 493

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343171890|gb|AEL98649.1| ALBINO3-like protein, partial [Silene latifolia]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/320 (65%), Positives = 255/320 (79%), Gaps = 19/320 (5%)

Query: 1   MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 60
           MAMRSL PQ+KAIQ+RYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL
Sbjct: 156 MAMRSLQPQIKAIQKRYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 215

Query: 61  SNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPV 120
           SNVA+EGLLTEGFFWIPSLAGPTT+AAR +GSGISWLFPFVDGHPPLGWSDT AYLVLPV
Sbjct: 216 SNVANEGLLTEGFFWIPSLAGPTTVAARASGSGISWLFPFVDGHPPLGWSDTAAYLVLPV 275

Query: 121 LLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLST 180
           LL+VSQYIS++I+QSSQ +DPN+KSSQA+T FLPLMIGYF+LSVPSGLSLYWFTNN+LST
Sbjct: 276 LLIVSQYISIQIMQSSQPDDPNLKSSQAITKFLPLMIGYFSLSVPSGLSLYWFTNNILST 335

Query: 181 AQQVWLQKFGGAKDPMKQFS-DIIKDERLDINKSVPGLSSTKKEARQAEKLTTEGPRPGE 239
            QQVWLQK GGAK+P+ Q S D++K+E+    K+V    S + E      + + GPRPG+
Sbjct: 336 LQQVWLQKMGGAKNPVGQISGDLLKEEQPQPAKTVYEAKSIQAEV----DIPSTGPRPGD 391

Query: 240 KFKQIREQEARRRQQREEEKRKAAEAAAKGNQTINGEQEREASILGSAKGVQTDLVDKDD 299
           +FK+++E+EARR++Q EEE  K               + ++ +++G   G  ++LV+  +
Sbjct: 392 RFKKLKEEEARRKRQSEEENMKT--------------EVKQDNLVGPTNGSVSELVNGRN 437

Query: 300 ENFPSVTGDNASNIGVAING 319
            +  + +    SN GVA NG
Sbjct: 438 TDQSTTSVSATSNSGVAANG 457

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540205|ref|XP_003538580.1| PREDICTED: ALBINO3-like protein 1, chloroplastic-like [Glycine max]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 250/390 (64%), Positives = 301/390 (77%), Gaps = 16/390 (4%)

Query: 1   MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 60
           +AMR+L PQVKAIQ+RYAGDQERIQLETARLYKLA INPLAGCLPTLATIPVWIGLYRAL
Sbjct: 166 LAMRTLQPQVKAIQQRYAGDQERIQLETARLYKLANINPLAGCLPTLATIPVWIGLYRAL 225

Query: 61  SNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPV 120
           S+VADEGLLTEGFFWIPSLAGPTT+AARQNGSGISWLFPFVDGHPPLGWSDT AYLVLPV
Sbjct: 226 SSVADEGLLTEGFFWIPSLAGPTTVAARQNGSGISWLFPFVDGHPPLGWSDTLAYLVLPV 285

Query: 121 LLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLST 180
           LLVVSQYISV+I+QSSQ NDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYW TNN+LST
Sbjct: 286 LLVVSQYISVQIMQSSQPNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWLTNNILST 345

Query: 181 AQQVWLQKFGGAKDPMKQF-SDIIKDERLDINKSVPGL-SSTKKEARQAEKLTTEGPRPG 238
           AQQVWLQK GGAK+P++Q   DI+K++   + KS+  L S+T +EAR +EK T+EGP+PG
Sbjct: 346 AQQVWLQKLGGAKNPVRQVPDDIMKNDLTQVQKSMSKLNSTTAEEARLSEK-TSEGPQPG 404

Query: 239 EKFKQIREQEA--RRRQQREEEKRKAAEAAAKGNQTINGEQEREASILGSAKGVQTDLVD 296
           E+FK I+EQEA  +++++ EEEKRKA EAAA+  + ++   E    +     G   DLV 
Sbjct: 405 ERFKLIKEQEARRKQQREEEEEKRKALEAAARETK-VDKTLEETVEVENQTGG---DLVV 460

Query: 297 KDDENFPSVTGDNASNIGVAINGNISSHEFKENQDTISVFRTGDNEVSANSEVDGRNEQQ 356
           +      S+  D   +I   +NGN  S + + NQ++ S   T +NE SA+      N + 
Sbjct: 461 EKSR---SLASDTDPSISGVVNGNPLSKDLEGNQNSTSTSETENNEGSAHF----NNVEI 513

Query: 357 SQENLGKEGLEVHARSATTDDKLSEEETHE 386
           +++ L KE  EV   + TT+ +   EET +
Sbjct: 514 NEKILDKEPREVLTTTTTTNKQPPAEETKD 543

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343171892|gb|AEL98650.1| ALBINO3-like protein, partial [Silene latifolia]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/320 (65%), Positives = 252/320 (78%), Gaps = 19/320 (5%)

Query: 1   MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 60
           MAMRSL PQ+KAIQ+RYAGDQERIQLETAR YKLAGINPLAGCLPTLATIPVWIGLYRAL
Sbjct: 156 MAMRSLQPQIKAIQKRYAGDQERIQLETARSYKLAGINPLAGCLPTLATIPVWIGLYRAL 215

Query: 61  SNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPV 120
           SNVA+EGLLTEGFFWIPSLAGPTT+AAR +GSGISWLFPFVDGHPPLGWSDT AYLVLPV
Sbjct: 216 SNVANEGLLTEGFFWIPSLAGPTTVAARASGSGISWLFPFVDGHPPLGWSDTAAYLVLPV 275

Query: 121 LLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLST 180
           LL+VSQYIS++I+QSSQ +DPN+KSSQA+T FLPLMIGYF+LSVPSGLSLYWFTNN+LST
Sbjct: 276 LLIVSQYISIQIMQSSQPDDPNLKSSQAITKFLPLMIGYFSLSVPSGLSLYWFTNNILST 335

Query: 181 AQQVWLQKFGGAKDPMKQFS-DIIKDERLDINKSVPGLSSTKKEARQAEKLTTEGPRPGE 239
            QQVWLQK GGAK+P+ Q S D++K+E+    K+V    S + E      + + GPR G 
Sbjct: 336 LQQVWLQKMGGAKNPVGQISGDLLKEEQPQPAKTVYEAKSIQAEV----DIPSTGPRQGN 391

Query: 240 KFKQIREQEARRRQQREEEKRKAAEAAAKGNQTINGEQEREASILGSAKGVQTDLVDKDD 299
           +FK+++E+EARR++Q EEE  K               + ++ +++G   G  ++LV+  +
Sbjct: 392 RFKKLKEEEARRKRQSEEENMKT--------------EVKQDNLVGPTNGSVSELVNGRN 437

Query: 300 ENFPSVTGDNASNIGVAING 319
            +  + +    SN GVA NG
Sbjct: 438 TDQSTTSVSATSNSGVAANG 457

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450415|ref|XP_004142958.1| PREDICTED: ALBINO3-like protein 1, chloroplastic-like [Cucumis sativus]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 246/391 (62%), Positives = 283/391 (72%), Gaps = 47/391 (12%)

Query: 1   MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 60
           MAMRSL PQVKA+Q+RYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL
Sbjct: 158 MAMRSLQPQVKAVQQRYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 217

Query: 61  SNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPV 120
           SNVA+EGLLTEGFFWIPSLAGPTTIA+RQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPV
Sbjct: 218 SNVANEGLLTEGFFWIPSLAGPTTIASRQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPV 277

Query: 121 LLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLST 180
           LLVVSQYISV+I+QSSQNNDP+MKSSQA+T FL LMIGYFALSVPSGLSLYW TNN+LST
Sbjct: 278 LLVVSQYISVQIMQSSQNNDPSMKSSQAITQFLLLMIGYFALSVPSGLSLYWLTNNILST 337

Query: 181 AQQVWLQKFGGAKDPMKQFSD-IIKDE--RLDINKSVPGLSSTKKE--ARQAEKLTTEGP 235
           AQQ WLQK GGAK   KQF D I+K E  ++ +    P L+S      ARQ EK T EG 
Sbjct: 338 AQQAWLQKAGGAKTLDKQFIDEIMKQEEKQVRVQSEAPKLNSISSSTVARQEEKPTAEGL 397

Query: 236 RPGEKFKQIREQEARRRQQREEEKRKAAEAAAKGNQTINGEQEREASILGSAKGVQTDLV 295
           +PGE+FK+++EQEAR RQQREEE+RKA E+A   + T+N                     
Sbjct: 398 KPGERFKRLKEQEARLRQQREEEERKAEESAKAESLTVND-------------------- 437

Query: 296 DKDDENFPSVTGDNASNIGVAINGNISSHEFKENQDTISVFRTGDNEVSANSEVDGRNEQ 355
                      GD ++ +GV +NG++S  + KE+Q++I    T    V  +SE       
Sbjct: 438 -----------GDKSATVGVVVNGSLSRQDVKEDQNSIPT--TTMQRVDVDSEPSATQ-- 482

Query: 356 QSQENLGKEGLEVHARSATTDDKLSEEETHE 386
                 G+  LE + R A  D KL+ EE  E
Sbjct: 483 ------GEGVLETYTRVA-KDAKLNGEEQRE 506

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9743337|gb|AAF97961.1|AC000103_11 F21J9.16 [Arabidopsis thaliana]

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/362 (60%), Positives = 274/362 (75%), Gaps = 23/362 (6%)

Query: 1   MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 60
           MAM+SL PQ+KAIQERYAGDQE+IQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL
Sbjct: 171 MAMKSLTPQIKAIQERYAGDQEKIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 230

Query: 61  SNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPV 120
           SNVADEGLLTEGFFWIPSLAGPTT+AARQNGSGISWLFPF++GHPPLGW DT AYLVLP+
Sbjct: 231 SNVADEGLLTEGFFWIPSLAGPTTVAARQNGSGISWLFPFIEGHPPLGWPDTLAYLVLPL 290

Query: 121 LLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLST 180
           LLV SQY+S++I+QSSQ+NDP MKSSQA+T  LPLMIGYFALSVPSGLSLYW TNN+LST
Sbjct: 291 LLVFSQYLSIQIMQSSQSNDPAMKSSQAVTKLLPLMIGYFALSVPSGLSLYWLTNNILST 350

Query: 181 AQQVWLQKFGGAKDPMKQFSDII----KDERLDINKSVPGLSSTKKEA-----RQAEKLT 231
           AQQVWLQK+GGAK+P+++F++++    K ++++ + S P +  +  E      +  EK+T
Sbjct: 351 AQQVWLQKYGGAKNPVEKFTNLVTKEDKTQQIEKSFSEPLVQKSVSELKIPREKGGEKVT 410

Query: 232 TEGPRPGEKFKQIREQEARRRQQREEEKRKAAEAAAKGNQTINGEQEREASILGSAKGVQ 291
            E P+PGE+F+ ++EQEA+RR  RE+E+R+ AEAA     T    ++ E S         
Sbjct: 411 PECPKPGERFRLLKEQEAKRR--REKEERQKAEAALSNQNTDKAHEQDEKS--------D 460

Query: 292 TDLVDKDDENFPSVTGDNASNIGVAINGNISSHEFKENQDTISVFRTG-DNEVSANSEVD 350
           T +V +DD+       D  S+  VA+NG  S    ++++ T   F  G D E   + E +
Sbjct: 461 TAIVAEDDKKTELSAVDETSDGTVAVNGKPS---IQKDETTNGTFGIGHDTEQQHSHETE 517

Query: 351 GR 352
            R
Sbjct: 518 KR 519

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254150|ref|NP_173858.5| ALBINO3-like protein 1 [Arabidopsis thaliana] gi|223590242|sp|Q9FYL3.3|ALB31_ARATH RecName: Full=ALBINO3-like protein 1, chloroplastic; AltName: Full=Arabidopsis thaliana envelope membrane integrase; AltName: Full=Protein ALBINA 4; Short=Ath4; AltName: Full=Protein ARTEMIS; Flags: Precursor gi|91680591|emb|CAJ45566.1| Alb protein [Arabidopsis thaliana] gi|332192418|gb|AEE30539.1| ALBINO3-like protein 1 [Arabidopsis thaliana]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/362 (60%), Positives = 274/362 (75%), Gaps = 23/362 (6%)

Query: 1   MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 60
           MAM+SL PQ+KAIQERYAGDQE+IQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL
Sbjct: 151 MAMKSLTPQIKAIQERYAGDQEKIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 210

Query: 61  SNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPV 120
           SNVADEGLLTEGFFWIPSLAGPTT+AARQNGSGISWLFPF++GHPPLGW DT AYLVLP+
Sbjct: 211 SNVADEGLLTEGFFWIPSLAGPTTVAARQNGSGISWLFPFIEGHPPLGWPDTLAYLVLPL 270

Query: 121 LLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLST 180
           LLV SQY+S++I+QSSQ+NDP MKSSQA+T  LPLMIGYFALSVPSGLSLYW TNN+LST
Sbjct: 271 LLVFSQYLSIQIMQSSQSNDPAMKSSQAVTKLLPLMIGYFALSVPSGLSLYWLTNNILST 330

Query: 181 AQQVWLQKFGGAKDPMKQFSDII----KDERLDINKSVPGLSSTKKEA-----RQAEKLT 231
           AQQVWLQK+GGAK+P+++F++++    K ++++ + S P +  +  E      +  EK+T
Sbjct: 331 AQQVWLQKYGGAKNPVEKFTNLVTKEDKTQQIEKSFSEPLVQKSVSELKIPREKGGEKVT 390

Query: 232 TEGPRPGEKFKQIREQEARRRQQREEEKRKAAEAAAKGNQTINGEQEREASILGSAKGVQ 291
            E P+PGE+F+ ++EQEA+RR  RE+E+R+ AEAA     T    ++ E S         
Sbjct: 391 PECPKPGERFRLLKEQEAKRR--REKEERQKAEAALSNQNTDKAHEQDEKS--------D 440

Query: 292 TDLVDKDDENFPSVTGDNASNIGVAINGNISSHEFKENQDTISVFRTG-DNEVSANSEVD 350
           T +V +DD+       D  S+  VA+NG  S    ++++ T   F  G D E   + E +
Sbjct: 441 TAIVAEDDKKTELSAVDETSDGTVAVNGKPS---IQKDETTNGTFGIGHDTEQQHSHETE 497

Query: 351 GR 352
            R
Sbjct: 498 KR 499

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	391
TAIR|locus:2809836	499	ALB4 "AT1G24490" [Arabidopsis	0.867	0.679	0.574	5.6e-100
TAIR|locus:2053230	462	ALB3 "ALBINO 3" [Arabidopsis t	0.585	0.495	0.675	4.1e-81
UNIPROTKB|Q3AG58	223	CHY_0004 "Sporulation associat	0.199	0.349	0.397	8.8e-23
TIGR_CMR|CHY_0004	223	CHY_0004 "sporulation associat	0.199	0.349	0.397	8.8e-23
UNIPROTKB|Q71VQ8	287	yidC1 "Membrane protein insert	0.199	0.271	0.4	1.1e-18
UNIPROTKB|Q5HUK1	530	yidC "Membrane protein inserta	0.196	0.145	0.423	1.2e-18
TIGR_CMR|CJE_1038	530	CJE_1038 "inner membrane prote	0.196	0.145	0.423	1.2e-18
UNIPROTKB|Q9KVY4	541	yidC "Membrane protein inserta	0.194	0.140	0.417	8.1e-16
TIGR_CMR|VC_0004	541	VC_0004 "inner membrane protei	0.194	0.140	0.417	8.1e-16
UNIPROTKB|Q3Z7P3	277	DET1040 "Inner membrane protei	0.452	0.638	0.287	2.4e-15

TAIR|locus:2809836 ALB4 "AT1G24490" [Arabidopsis thaliana (taxid:3702)]

 Score = 992 (354.3 bits), Expect = 5.6e-100, P = 5.6e-100
 Identities = 208/362 (57%), Positives = 255/362 (70%)

Query:     1 MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 60
             MAM+SL PQ+KAIQERYAGDQE+IQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL
Sbjct:   151 MAMKSLTPQIKAIQERYAGDQEKIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 210

Query:    61 SNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPV 120
             SNVADEGLLTEGFFWIPSLAGPTT+AARQNGSGISWLFPF++GHPPLGW DT AYLVLP+
Sbjct:   211 SNVADEGLLTEGFFWIPSLAGPTTVAARQNGSGISWLFPFIEGHPPLGWPDTLAYLVLPL 270

Query:   121 LLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLST 180
             LLV SQY+S++I+QSSQ+NDP MKSSQA+T  LPLMIGYFALSVPSGLSLYW TNN+LST
Sbjct:   271 LLVFSQYLSIQIMQSSQSNDPAMKSSQAVTKLLPLMIGYFALSVPSGLSLYWLTNNILST 330

Query:   181 AQQVWLQKFGGAKDPMKQFSDII--KDERLDINKSV--PGLSSTKKEAR-----QAEKLT 231
             AQQVWLQK+GGAK+P+++F++++  +D+   I KS   P +  +  E +       EK+T
Sbjct:   331 AQQVWLQKYGGAKNPVEKFTNLVTKEDKTQQIEKSFSEPLVQKSVSELKIPREKGGEKVT 390

Query:   232 TEGPRPGEKFKQIXXXXXXXXXXXXXXXXXXXXXXXXGNQTINGEQEREASILGSAKGVQ 291
              E P+PGE+F+ +                         NQ  +   E++           
Sbjct:   391 PECPKPGERFRLLKEQEAKRRREKEERQKAEAALS---NQNTDKAHEQDEKS-------D 440

Query:   292 TDLVDKDDENFPSVTGDNASNIGVAINGNISSHEFKENQDTISVFRTG-DNEVSANSEVD 350
             T +V +DD+       D  S+  VA+NG  S    ++++ T   F  G D E   + E +
Sbjct:   441 TAIVAEDDKKTELSAVDETSDGTVAVNGKPS---IQKDETTNGTFGIGHDTEQQHSHETE 497

Query:   351 GR 352
              R
Sbjct:   498 KR 499

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

TAIR|locus:2053230 ALB3 "ALBINO 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
 Identities = 156/231 (67%), Positives = 192/231 (83%)

Query:     1 MAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 60
             +AM++L P++KAIQ+RYAG+QERIQLET+RLYK AG+NPLAGCLPTLATIPVWIGLY+AL
Sbjct:   167 LAMQNLQPKIKAIQQRYAGNQERIQLETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQAL 226

Query:    61 SNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPV 120
             SNVA+EGL TEGFFWIPSL GPT+IAARQ+GSGISWLFPFVDGHPPLGW DT AYLVLPV
Sbjct:   227 SNVANEGLFTEGFFWIPSLGGPTSIAARQSGSGISWLFPFVDGHPPLGWYDTVAYLVLPV 286

Query:   121 LLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLST 180
             LL+ SQY+S++I++  Q +DP  K++  +  FLPLMIGYFALSVPSGLS+YW TNN+LST
Sbjct:   287 LLIASQYVSMEIMKPPQTDDPAQKNTLLVFKFLPLMIGYFALSVPSGLSIYWLTNNVLST 346

Query:   181 AQQVWLQKFGGAKDPMKQ-FSDIIKDERLDINKSVPGLSSTK-KEARQAEK 229
             AQQV+L+K GGAK  M +  S II   R   + + P  +  + ++ ++ EK
Sbjct:   347 AQQVYLRKLGGAKPNMDENASKIISAGRAKRSIAQPDDAGERFRQLKEQEK 397

GO:0005886 "plasma membrane" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IDA

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0090342 "regulation of cell aging" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q3AG58 CHY_0004 "Sporulation associated-membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 160 (61.4 bits), Expect = 8.8e-23, Sum P(2) = 8.8e-23
 Identities = 31/78 (39%), Positives = 47/78 (60%)

Query:     3 MRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSN 62
             M+ L P+++ IQ++Y  D ++ Q     LYK  G+NP++GCLP L  +P+ I LYRAL N
Sbjct:    56 MQELQPKMQEIQKKYKNDPQKQQQALMELYKEYGVNPMSGCLPMLIQLPILIALYRALYN 115

Query:    63 VADEGLLTEGFFWIPSLA 80
                       FFWI +++
Sbjct:   116 FKYLNPAHAKFFWIANIS 133

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|CHY_0004 CHY_0004 "sporulation associated-membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 160 (61.4 bits), Expect = 8.8e-23, Sum P(2) = 8.8e-23
 Identities = 31/78 (39%), Positives = 47/78 (60%)

Query:     3 MRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSN 62
             M+ L P+++ IQ++Y  D ++ Q     LYK  G+NP++GCLP L  +P+ I LYRAL N
Sbjct:    56 MQELQPKMQEIQKKYKNDPQKQQQALMELYKEYGVNPMSGCLPMLIQLPILIALYRALYN 115

Query:    63 VADEGLLTEGFFWIPSLA 80
                       FFWI +++
Sbjct:   116 FKYLNPAHAKFFWIANIS 133

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0030436 "asexual sporulation" evidence=ISS

UNIPROTKB|Q71VQ8 yidC1 "Membrane protein insertase YidC 1" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 167 (63.8 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
 Identities = 34/85 (40%), Positives = 54/85 (63%)

Query:     2 AMRSLAPQVKAIQERYAG-DQE---RIQLETARLYKLAGINPLAGCLPTLATIPVWIGLY 57
             AM +L P++K +QE+Y+  D E   ++Q ET RLY+   +NP+ GCLP L  +P+ +G Y
Sbjct:    93 AMTNLQPKIKELQEKYSSKDNETKQKLQQETMRLYQENSVNPMMGCLPLLIQMPILLGFY 152

Query:    58 RALSNVADEGLLTEGFFWIPSLAGP 82
             +A+S  A+  + T+ F W+  L  P
Sbjct:   153 QAISRTAE--IKTDSFLWM-QLGNP 174

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5HUK1 yidC "Membrane protein insertase YidC" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 167 (63.8 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
 Identities = 33/78 (42%), Positives = 48/78 (61%)

Query:     3 MRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSN 62
             ++ LAP++K I+ERY GD +++ +    LYK  G NP++GCLP L  IP++  +YR L N
Sbjct:   365 LKDLAPKMKDIRERYKGDPQKMNMHMMELYKKHGANPMSGCLPILLQIPIFFAIYRVLLN 424

Query:    63 VADEGLLTEGFFWIPSLA 80
              A E       FWI  L+
Sbjct:   425 -AIELKAAPWAFWIHDLS 441

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CJE_1038 CJE_1038 "inner membrane protein, 60 kDa" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 167 (63.8 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
 Identities = 33/78 (42%), Positives = 48/78 (61%)

Query:     3 MRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSN 62
             ++ LAP++K I+ERY GD +++ +    LYK  G NP++GCLP L  IP++  +YR L N
Sbjct:   365 LKDLAPKMKDIRERYKGDPQKMNMHMMELYKKHGANPMSGCLPILLQIPIFFAIYRVLLN 424

Query:    63 VADEGLLTEGFFWIPSLA 80
              A E       FWI  L+
Sbjct:   425 -AIELKAAPWAFWIHDLS 441

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q9KVY4 yidC "Membrane protein insertase YidC" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 149 (57.5 bits), Expect = 8.1e-16, Sum P(2) = 8.1e-16
 Identities = 33/79 (41%), Positives = 47/79 (59%)

Query:     3 MRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSN 62
             MR L P+++A++ER   D++R+  E   LYK   +NPL GCLP L  +P++I LY AL  
Sbjct:   381 MRMLQPKLQAMRERIGDDRQRMSQEMMELYKKEKVNPLGGCLPILLQMPIFIALYWALME 440

Query:    63 VADEGLLTEGFF-WIPSLA 80
               +  L    FF WI  L+
Sbjct:   441 SVE--LRHSPFFGWIHDLS 457

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_0004 VC_0004 "inner membrane protein, 60 kDa" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 149 (57.5 bits), Expect = 8.1e-16, Sum P(2) = 8.1e-16
 Identities = 33/79 (41%), Positives = 47/79 (59%)

Query:     3 MRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSN 62
             MR L P+++A++ER   D++R+  E   LYK   +NPL GCLP L  +P++I LY AL  
Sbjct:   381 MRMLQPKLQAMRERIGDDRQRMSQEMMELYKKEKVNPLGGCLPILLQMPIFIALYWALME 440

Query:    63 VADEGLLTEGFF-WIPSLA 80
               +  L    FF WI  L+
Sbjct:   441 SVE--LRHSPFFGWIHDLS 457

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3Z7P3 DET1040 "Inner membrane protein, 60 kDa" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 202 (76.2 bits), Expect = 2.4e-15, P = 2.4e-15
 Identities = 58/202 (28%), Positives = 98/202 (48%)

Query:     3 MRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCL-PTLATIPVWIGLYRALS 61
             M+ +   ++A+++++  D++++  E  +LYK +G++P  GCL P L   P+WI LY+A+ 
Sbjct:    21 MQEITVHMEALKKKHGNDRQKLAEEQMKLYKESGVSP-TGCLVPMLIQFPIWIALYQAIV 79

Query:    62 NVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLG----WSD-TFAYL 116
              V    +  E F    +LA              SW  P V    PL     W D +    
Sbjct:    80 RVL--AVTPEDFM---NLADHL----------YSW--PVVYQTLPLSNHFLWMDLSLPDF 122

Query:   117 VLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNN 176
              L VL+ VS Y+  K+      N       Q ++  +P M  +F+LS PSGL+ YWF + 
Sbjct:   123 ALAVLVGVSMYVQQKMSTPKAINQQQAAQGQMMSFMMPFMFFFFSLSFPSGLAFYWFVSA 182

Query:   177 LLSTAQQVWLQKFGGAKDPMKQ 198
             ++    Q ++  +G   +PM +
Sbjct:   183 IVGIIMQYFITGWGQL-EPMAE 203

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FYL3	ALB31_ARATH	No assigned EC number	0.6077	0.8670	0.6793	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00030703001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (393 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00034124001	RecName- Full=50S ribosomal protein L34; (147 aa)	•								0.715
	GSVIVG00015270001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (752 aa)	•						•		0.657
	GSVIVG00016972001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (489 aa)				•	•		•		0.480
	GSVIVG00026227001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (367 aa)					•		•		0.464

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	391
pfam02096	193	pfam02096, 60KD_IMP, 60Kd inner membrane protein	2e-56
TIGR03592	181	TIGR03592, yidC_oxa1_cterm, membrane protein inser	6e-52
PRK01318	521	PRK01318, PRK01318, membrane protein insertase; Pr	1e-39
COG0706	314	COG0706, YidC, Preprotein translocase subunit YidC	5e-36
PRK00145	223	PRK00145, PRK00145, putative inner membrane protei	4e-27
PRK01622	256	PRK01622, PRK01622, OxaA-like protein precursor; V	9e-26
PRK01315	329	PRK01315, PRK01315, putative inner membrane protei	3e-25
PRK02944	255	PRK02944, PRK02944, OxaA-like protein precursor; V	2e-22
PRK03449	304	PRK03449, PRK03449, putative inner membrane protei	3e-21
PRK01001	795	PRK01001, PRK01001, putative inner membrane protei	1e-20
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	3e-12
PRK02201	357	PRK02201, PRK02201, putative inner membrane protei	1e-09
PRK02463	307	PRK02463, PRK02463, OxaA-like protein precursor; P	3e-08
PRK02654	375	PRK02654, PRK02654, putative inner membrane protei	3e-07
MTH00207	572	MTH00207, ND5, NADH dehydrogenase subunit 5; Provi	7e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001

>gnl|CDD|216872 pfam02096, 60KD_IMP, 60Kd inner membrane protein

 Score =  182 bits (465), Expect = 2e-56
 Identities = 65/189 (34%), Positives = 98/189 (51%), Gaps = 31/189 (16%)

Query: 3   MRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSN 62
           M+ L P++K IQE+Y  D +++Q E  +LYK  G+NPLAGCLP L  +P++I LYRAL N
Sbjct: 32  MQELQPEIKEIQEKYKDDPQKLQQEMMKLYKEHGVNPLAGCLPMLIQLPIFIALYRALRN 91

Query: 63  VAD-EGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVL 121
           +A+   L T GF WI  L+ P                   D            Y +LP+L
Sbjct: 92  MAELRSLETAGFLWIKDLSAP-------------------DPP----------YFILPIL 122

Query: 122 LVVSQYISVKIIQSSQNNDPNMKSSQALTN-FLPLMIGYFALSVPSGLSLYWFTNNLLST 180
             ++ ++  K+  S    D    +   +    +PL+  +F L+ P+GL LYW  +NL S 
Sbjct: 123 AGLTMFLQQKLSPSQDPPDLQQSAQMKIMMYIMPLIFLFFFLNFPAGLVLYWIVSNLFSL 182

Query: 181 AQQVWLQKF 189
            QQ+ ++K 
Sbjct: 183 VQQLIIRKP 191

Length = 193

>gnl|CDD|234272 TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1 family, C-terminal domain

 Score =  171 bits (435), Expect = 6e-52
 Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 35/187 (18%)

Query: 2   AMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALS 61
            M+ L P++K IQE+Y  D +++Q E  +LYK  G+NPL GCLP L  +P++I LY+ L 
Sbjct: 30  KMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEEGVNPLGGCLPLLIQMPIFIALYQVLR 89

Query: 62  NVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVL 121
                 L    F WI  L+ P                   D            Y +LP+L
Sbjct: 90  RS--IELRHAPFLWIQDLSAP-------------------D-----------PYYILPIL 117

Query: 122 LVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTA 181
           + V+ ++  K+  S   +    K    +   +P+M  +F LS P+GL LYW  +NL +  
Sbjct: 118 MGVTMFLQQKLSPSGPPDPAQQK---IMMYIMPVMFLFFFLSFPAGLVLYWVVSNLFTII 174

Query: 182 QQVWLQK 188
           QQ+ + +
Sbjct: 175 QQLIINR 181

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here [Protein fate, Protein and peptide secretion and trafficking]. Length = 181

>gnl|CDD|234942 PRK01318, PRK01318, membrane protein insertase; Provisional

 Score =  147 bits (374), Expect = 1e-39
 Identities = 60/202 (29%), Positives = 93/202 (46%), Gaps = 38/202 (18%)

Query: 1   MA-MRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRA 59
           MA M+ L P+++ ++E+Y  D +++Q E   LYK   +NPL GCLP L  IP++  LY+ 
Sbjct: 349 MAKMKVLQPKMQELKEKYKDDPQKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKV 408

Query: 60  LSNVADEGLLTEGFF-WIP--SLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYL 116
           L  V+ E L    F  WI   S   P  I                               
Sbjct: 409 L-LVSIE-LRHAPFIGWIHDLSAPDPYFI---------------------------LHIG 439

Query: 117 VLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNN 176
           +LP+L+ ++ ++  K+  +    DP       +  F+PL+  +F LS P+GL LYW  NN
Sbjct: 440 LLPILMGITMFLQQKL--NPTPTDPMQ---AKIMKFMPLIFTFFFLSFPAGLVLYWIVNN 494

Query: 177 LLSTAQQVWLQKFGGAKDPMKQ 198
           LL+  QQ  + +    K  +  
Sbjct: 495 LLTIIQQYLINRRLEKKKLLAA 516

Length = 521

>gnl|CDD|223778 COG0706, YidC, Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

 Score =  133 bits (336), Expect = 5e-36
 Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 33/189 (17%)

Query: 3   MRSLAPQVKAIQERYAG-DQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALS 61
           M+ L P++K IQE+Y G D+++ Q E  +LYK   +NPLAGCLP L  +P++I LY  L 
Sbjct: 139 MQELQPKIKEIQEKYKGTDKQKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLR 198

Query: 62  NVADEGLLTEGFF-WIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPV 120
           +     L    F  WI  L+ P                            D    L+LP+
Sbjct: 199 STV--ELRGAPFLGWITDLSLP----------------------------DPDYILLLPI 228

Query: 121 LLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLST 180
           L  V+ ++  K+   + +   +    + +   +P++  +F  + P+GL LYW  +NL S 
Sbjct: 229 LAGVTMFLQQKLSPRNLSTPQD-PQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSI 287

Query: 181 AQQVWLQKF 189
            QQ  L K 
Sbjct: 288 LQQYILNKP 296

Length = 314

>gnl|CDD|234665 PRK00145, PRK00145, putative inner membrane protein translocase component YidC; Provisional

 Score =  106 bits (267), Expect = 4e-27
 Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 34/192 (17%)

Query: 2   AMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALS 61
            M  + P++K +Q +Y  D +++Q E  +LYK  G+NPL GCLP L   P+ I LY   +
Sbjct: 59  RMNEIQPEIKKLQAKYKNDPQKLQQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFN 118

Query: 62  NVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVL 121
           N+   G+    F WI  LA P                                  +LP+L
Sbjct: 119 NL--TGINGVSFLWIKDLAKPDI------------------------------TWILPIL 146

Query: 122 LVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTA 181
              + Y+S  ++  + ++       + +   + + +G  +    S L LYW   NL+   
Sbjct: 147 SGATTYLSGYLMTKADSSQA--GQMKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQII 204

Query: 182 QQVWLQKFGGAK 193
           Q  +++K    K
Sbjct: 205 QTYFIKKLELKK 216

Length = 223

>gnl|CDD|179310 PRK01622, PRK01622, OxaA-like protein precursor; Validated

 Score =  104 bits (260), Expect = 9e-26
 Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 41/195 (21%)

Query: 1   MAMRSLAPQVKAIQERY-----AGDQERIQLETARLYKLAGINPLA-GCLPTLATIPVWI 54
             M  + P++  IQ +         Q+  Q E   LYK   INPLA GCLP L  +P+  
Sbjct: 91  EKMAVMKPELDKIQAKLKVTKDLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILS 150

Query: 55  GLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFA 114
             Y A+     E + +  F W                               LG +D   
Sbjct: 151 AFYYAIRRT--EEIASHSFLWFN-----------------------------LGHAD--- 176

Query: 115 YLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFT 174
             +LP++  ++ +I +K+ QS+  +   ++  +     +P MI + + + PS L LYW T
Sbjct: 177 -HILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGIMMPAMILFMSFAAPSALVLYWIT 235

Query: 175 NNLLSTAQQVWLQKF 189
             L    Q + L+K 
Sbjct: 236 GGLFLMGQTIVLRKV 250

Length = 256

>gnl|CDD|234941 PRK01315, PRK01315, putative inner membrane protein translocase component YidC; Provisional

 Score =  104 bits (261), Expect = 3e-25
 Identities = 76/284 (26%), Positives = 118/284 (41%), Gaps = 42/284 (14%)

Query: 2   AMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALS 61
            M+ + P++K IQE+Y GD+ER+  E  +LYK  G NPL+ CLP L  +P++  LYR L 
Sbjct: 70  NMQEIQPKMKKIQEKYKGDRERMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLD 129

Query: 62  NVADE----GLLTEG---------FFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLG 108
           + A      G +             F  P LA  T + A   G+    +           
Sbjct: 130 SAASRGDGIGPINPPLLESFRHAHIFGAP-LAA-TFLQALNAGNTAVQVVA--------- 178

Query: 109 WSDTFAYLVLPVLLVVSQYIS-----VKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALS 163
                   VL +L+  SQ+I+      K +       P  +  + L    PLM     ++
Sbjct: 179 -------AVLIILMSASQFITQLQLMTKNMPPEAKTGPMAQQQKMLLYLFPLMFLVSGIA 231

Query: 164 VPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDERLDINKSVPGLSSTKKE 223
            P G+  YW T+N+ +  QQ ++ +             I ++ERL       G S  K  
Sbjct: 232 FPVGVLFYWLTSNVWTMGQQFYVIRNNPTPGSPAA---IAREERLAKKGKDHGESEGKVV 288

Query: 224 ARQAEKLTTEGPRPGEKFKQIREQEARRRQQREEEKRKAAEAAA 267
           A +     T   R   K + ++ Q+  +RQ R   KR+   AA 
Sbjct: 289 APEGAVAQTTEVREQTKRQTVQRQQP-KRQSR--AKRQKGGAAT 329

Length = 329

>gnl|CDD|179508 PRK02944, PRK02944, OxaA-like protein precursor; Validated

 Score = 94.8 bits (236), Expect = 2e-22
 Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 48/204 (23%)

Query: 2   AMRSLAPQVKAIQERY----AGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLY 57
           AM++L P+++ ++E+Y       Q+++Q E  +L++  G+NPLAGCLP    +P+ I  Y
Sbjct: 87  AMQALQPEMQKLKEKYSSKDQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFY 146

Query: 58  RALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLV 117
            A+   ++       F W                        F  G           Y +
Sbjct: 147 HAIMRTSEIS--KHSFLW------------------------FDLGQAD-------PYYI 173

Query: 118 LPVLLVVSQYISVKIIQS-SQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNN 176
           LP++  ++ +I  K++ + +   +P M     +   +P+MI  FA++ P+ LSLYW   N
Sbjct: 174 LPIVAGITTFIQQKLMMAGTAGQNPQMA---MMLWLMPIMILIFAINFPAALSLYWVVGN 230

Query: 177 LLSTAQ-------QVWLQKFGGAK 193
           +   AQ       ++   K GG+K
Sbjct: 231 IFMIAQTYLIKGPEIKASKAGGSK 254

Length = 255

>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase component YidC; Provisional

 Score = 92.4 bits (230), Expect = 3e-21
 Identities = 71/285 (24%), Positives = 118/285 (41%), Gaps = 79/285 (27%)

Query: 3   MRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSN 62
           M+ L PQ+KA+Q++Y  D++++ LE  +L K  G NP+ GCLP LA IPV++GL+  L +
Sbjct: 61  MQELQPQIKALQKKYGNDRQKMALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRS 120

Query: 63  VADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLF------PFVDGH---PPLGWSDTF 113
               G    GF       G   ++  +N +  +++F       F+D      PL      
Sbjct: 121 FNRTG---TGF-------GQLGMSVEENRNTPNYVFSAEDVQSFLDARLFGAPLS----- 165

Query: 114 AYLVLPV--LLVVSQYISVKII---------------------------QSSQNNDPNMK 144
           AY+ +P   L     +    II                           +++ N    M 
Sbjct: 166 AYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVARQSAEAAANPQTAMM 225

Query: 145 SSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIK 204
           +  AL  F PL +      +P  + LYW +NN+ +  QQ ++            F  I K
Sbjct: 226 NKLALWVF-PLGVLVGGPFLPLAILLYWVSNNIWTFGQQHYV------------FGKIDK 272

Query: 205 DERLDINKSVPGLSSTKKEARQAEKLTTEGPRPGEKFKQIREQEA 249
           +E              KK+A+   +     P+PG K K+ +++  
Sbjct: 273 EE------------EAKKQAKAERRAAN-APKPGAKPKRSKKKAP 304

Length = 304

>gnl|CDD|234887 PRK01001, PRK01001, putative inner membrane protein translocase component YidC; Provisional

 Score = 93.3 bits (232), Expect = 1e-20
 Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 26/192 (13%)

Query: 3   MRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSN 62
           M+ L+P ++ IQ++Y  + +R Q+E   LYK   +NP+ GCLP L  +P  I ++  L +
Sbjct: 605 MQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKS 664

Query: 63  VADEGLLTEGFF---WIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLP 119
                LL    F   WI +L  P  +         SW  P         W     + +LP
Sbjct: 665 ---SFLLRGASFIPGWIDNLTAPDVL--------FSWETPI--------WFIGNEFHLLP 705

Query: 120 VLLVVSQYISVKIIQSSQNNDP---NMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNN 176
           +LL V  +   K I S +   P     +  +A+   + L+  +   + PSGL++YW ++ 
Sbjct: 706 ILLGVVMFAQQK-ISSLKRKGPVTDQQRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSM 764

Query: 177 LLSTAQQVWLQK 188
           LL   QQ    K
Sbjct: 765 LLGVIQQWVTNK 776

Length = 795

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 79/366 (21%), Positives = 133/366 (36%), Gaps = 70/366 (19%)

Query: 6   LAPQVKAIQERYAG--DQERIQLETAR---LYKLAGINPLAGCLPTLATIPVWIGLYRAL 60
           + P+ KA++E Y G  D+  I+    +   L K  G NPLAGC+P L  IPV++GLY+ L
Sbjct: 64  IRPKRKALREEYKGKTDEASIRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVL 123

Query: 61  SNVA--DEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPP-----LGWS-DT 112
             +A  + GL       I  L     + +   G   +   P     P      LG +  T
Sbjct: 124 LRMARPEGGLENPVHQPIGFLT-SEEVESFLQGRVFNVPLPAYVSMPAEQLAYLGTTQAT 182

Query: 113 FAYLVLPVLLVVSQYISVKIIQSS----QNNDPNMKSSQALTNFL----------PLMIG 158
               VLP+ +  + + ++ +  S+    Q ND +   +  +  FL          PL +G
Sbjct: 183 VLAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAILAPIFPLSLG 242

Query: 159 YFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPM-KQFSDI------IKDERLDIN 211
                 P+ ++LYW  NNL +  Q + +      K P+  +F +          E+    
Sbjct: 243 LTG-PFPTAIALYWVANNLWTLIQNIIMYLILERKYPLTDEFKEHHAEQRAQYREKQKEK 301

Query: 212 KS------------------VPGLSST----KKEARQAEKLTTEGPRPGEKFKQIREQEA 249
           K+                   P L +     KK     +           K ++    + 
Sbjct: 302 KAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKN--------EAKARKKEIAQK 353

Query: 250 RRRQQREEEKRKAAEAAAKGNQTINGEQEREASILGSAKGVQTDLVDKDDE----NFPSV 305
           RR  +RE  +    E AA   +        +A   G       +    ++E    + P V
Sbjct: 354 RRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNEDTPSENEESKGSPPQV 413

Query: 306 TGDNAS 311
                +
Sbjct: 414 EATTTA 419

Length = 429

>gnl|CDD|235012 PRK02201, PRK02201, putative inner membrane protein translocase component YidC; Provisional

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 36/206 (17%), Positives = 75/206 (36%), Gaps = 45/206 (21%)

Query: 3   MRSLAPQVKAIQERYAGD------QERIQLETARLYKLAGINPLAGCLPTLATIPVWIGL 56
              L  +   I  +Y         ++R Q E   LYK   I+P +  +    T+P++I +
Sbjct: 162 QEELQGKKAKIDAKYKDYKKDKQMKQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAV 221

Query: 57  YRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISW--LFPFVDGHPPLGWSDTFA 114
           YR + +             +PS+    T     + S  SW  +F           +  + 
Sbjct: 222 YRVVQS-------------LPSIK--VTTWLGIDLSATSWQEIF-----------AGNWI 255

Query: 115 YLVLPVLLVVSQYISVKI-----------IQSSQNNDPNMKSSQALTNFLPLMIGYFALS 163
           YL + +++V  Q +S  +              +      +K      N + ++  +F + 
Sbjct: 256 YLPILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGVI 315

Query: 164 VPSGLSLYWFTNNLLSTAQQVWLQKF 189
             +G+ +YW    + +  Q + +  F
Sbjct: 316 FAAGVQIYWIIGGIWTILQTLGIHYF 341

Length = 357

>gnl|CDD|235040 PRK02463, PRK02463, OxaA-like protein precursor; Provisional

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 46/189 (24%), Positives = 69/189 (36%), Gaps = 43/189 (22%)

Query: 3   MRSLAPQVKAIQERY--AGDQER---IQLETARLYKLAGINPLA--GCLPTLATIPVWIG 55
           M  L P  + I ER   A  QE     Q E     +  GI+ L   GCLP L  +P +  
Sbjct: 93  MAYLKPVFEPINERLKNATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSA 152

Query: 56  LYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAY 115
           LY A      +G+ T  F  I                              LG       
Sbjct: 153 LYFAAQYT--KGVSTSTFLGID-----------------------------LGSPSLVLT 181

Query: 116 LVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTN 175
            ++ VL     ++S+  +   Q      +  +A+   +P+M+  F+ S P+G+ LYW   
Sbjct: 182 AIIGVLYFFQSWLSMMGVPEEQR-----EQMKAMMYMMPIMMVVFSFSSPAGVGLYWLVG 236

Query: 176 NLLSTAQQV 184
              S  QQ+
Sbjct: 237 GFFSIIQQL 245

Length = 307

>gnl|CDD|235058 PRK02654, PRK02654, putative inner membrane protein translocase component YidC; Provisional

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 10  VKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRAL 60
              IQERY  D ++ Q E  +L K  G NPLAGCLP L  +P+   L+  L
Sbjct: 67  QAEIQERYKNDPQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATL 116

Length = 375

>gnl|CDD|164753 MTH00207, ND5, NADH dehydrogenase subunit 5; Provisional

 Score = 44.4 bits (105), Expect = 7e-05
 Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 9/120 (7%)

Query: 77  PSLAGPT---TIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVV-SQYISVKI 132
            SL  P    T+ A  +GS ++W  P     P L       Y +LP+L+V     ++   
Sbjct: 417 KSLTTPMLLLTLGAITSGSALNWWLPTPQEEPIL----PLQYKLLPLLVVTLGALLAWLF 472

Query: 133 IQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSL-YWFTNNLLSTAQQVWLQKFGG 191
              +    P + ++        LM     LS    +S     ++N L    Q WL+  G 
Sbjct: 473 TTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLKLLDQGWLEMLGA 532

Length = 572

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.9 bits (95), Expect = 0.001
 Identities = 36/180 (20%), Positives = 70/180 (38%), Gaps = 26/180 (14%)

Query: 197  KQFSDIIKDERLDINKSVPGLSSTKKEARQAEKLTTEGPRPGEKFKQIREQEARRRQQRE 256
            K+ ++  K    D  K+   L    +EA++AE+L  +     +K +++++ E   + + E
Sbjct: 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAE 1733

Query: 257  EEKRKAAEAAAKGN-------------QTINGEQEREASILGSAKGVQTDLVDKDDENFP 303
            E K++A E   K                    E+++   I    + V  + +D++DE   
Sbjct: 1734 EAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRR 1793

Query: 304  SV----TGDNASNIGVAINGNISSHEFKENQDTISVFRTGDNEVSANSEV-DGRNEQQSQ 358
                    D   N    I G          +  + +  + + E SA  EV D +N Q  +
Sbjct: 1794 MEVDKKIKDIFDNFANIIEGG--------KEGNLVINDSKEMEDSAIKEVADSKNMQLEE 1845

Length = 2084

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	391
PRK00145	223	putative inner membrane protein translocase compon	100.0
TIGR03592	181	yidC_oxa1_cterm membrane protein insertase, YidC/O	100.0
PRK02944	255	OxaA-like protein precursor; Validated	100.0
PRK01001	795	putative inner membrane protein translocase compon	100.0
PRK00247	429	putative inner membrane protein translocase compon	100.0
PF02096	198	60KD_IMP: 60Kd inner membrane protein; InterPro: I	100.0
PRK01318	521	membrane protein insertase; Provisional	100.0
PRK03449	304	putative inner membrane protein translocase compon	100.0
PRK01622	256	OxaA-like protein precursor; Validated	100.0
COG0706	314	YidC Preprotein translocase subunit YidC [Intracel	100.0
PRK01315	329	putative inner membrane protein translocase compon	100.0
PRK02463	307	OxaA-like protein precursor; Provisional	100.0
PRK02201	357	putative inner membrane protein translocase compon	100.0
PRK02654	375	putative inner membrane protein translocase compon	99.96
KOG1239	372	consensus Inner membrane protein translocase invol	99.59
KOG1239	372	consensus Inner membrane protein translocase invol	98.63
COG1422	201	Predicted membrane protein [Function unknown]	87.1
PRK00247	429	putative inner membrane protein translocase compon	85.25

>PRK00145 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=1.3e-40  Score=314.59  Aligned_cols=155  Identities=30%  Similarity=0.644  Sum_probs=140.8

Q ss_pred             hhhhhchhHHHHHHHhhhCHHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCcC
Q 016329            2 AMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAG   81 (391)
Q Consensus         2 kMq~lQPem~kIqeKYk~Dqek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~~gl~~~gFlWi~dLs~   81 (391)
                      +|+.+|||+++||+||++|++++++|+++|||||||||++||+|+|+|+|||+|+|+++++++  ++.+++|+|++||+.
T Consensus        59 km~~iqP~~~~i~~k~k~d~~~~~~e~~~Lyk~~~inp~~~~lp~liQiPif~~l~~~i~~~~--~~~~~~flW~~dLt~  136 (223)
T PRK00145         59 RMNEIQPEIKKLQAKYKNDPQKLQQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNLT--GINGVSFLWIKDLAK  136 (223)
T ss_pred             HHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhh--hccCCCccChhhccC
Confidence            789999999999999999999999999999999999999999999999999999999999996  477889999999998


Q ss_pred             chhHhhhhcCCCccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHH
Q 016329           82 PTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFA  161 (391)
Q Consensus        82 pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d~l~~lILPVL~~~s~~ls~~i~~~~q~~dp~~k~~k~mm~~mPlmii~f~  161 (391)
                      +|                              ++++||+++++++|+++..+...  ...+.++++.|+++||+++++++
T Consensus       137 ~D------------------------------p~~iLPil~~~~~~l~~~~~~~~--~~~~~~~~k~m~~~~~i~~~~~~  184 (223)
T PRK00145        137 PD------------------------------ITWILPILSGATTYLSGYLMTKA--DSSQAGQMKTMNIGMSIFMGVMS  184 (223)
T ss_pred             cc------------------------------hHHHHHHHHHHHHHHHHHHcCCC--ChhHHHHHHHHHHHHHHHHHHHH
Confidence            87                              57899999999999998876433  12233467788999999999999


Q ss_pred             hhhhhHhHHHHHHhhHHHHHHHHHHHHhc
Q 016329          162 LSVPSGLSLYWFTNNLLSTAQQVWLQKFG  190 (391)
Q Consensus       162 ~~~PaGL~LYWitSNlfsIiQq~iL~k~~  190 (391)
                      +++|+||+|||++||+|+++|+++++++.
T Consensus       185 ~~~Pagl~lYW~~s~~~si~Q~~~l~~~~  213 (223)
T PRK00145        185 WKFKSALVLYWVIGNLIQIIQTYFIKKLE  213 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999854

>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain

Probab=100.00  E-value=4.4e-40  Score=301.23  Aligned_cols=152  Identities=38%  Similarity=0.786  Sum_probs=139.0

Q ss_pred             hhhhhchhHHHHHHHhhhCHHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCcC
Q 016329            2 AMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAG   81 (391)
Q Consensus         2 kMq~lQPem~kIqeKYk~Dqek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~~gl~~~gFlWi~dLs~   81 (391)
                      +|+++||||++||+||++|++++++|+++||||||+||++||+|+|+|+|||+++|+++|++.  ++.++||+|++||+.
T Consensus        30 km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~~~~p~~~~lp~liQ~Pif~~~~~~lr~~~--~l~~~~flW~~dL~~  107 (181)
T TIGR03592        30 KMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEEGVNPLGGCLPLLIQMPIFIALYQVLRRSI--ELRHAPFLWIKDLSA  107 (181)
T ss_pred             HHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHhhH--HhccCCCcCccccCc
Confidence            789999999999999999999999999999999999999999999999999999999999986  478899999999988


Q ss_pred             chhHhhhhcCCCccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHH
Q 016329           82 PTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFA  161 (391)
Q Consensus        82 pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d~l~~lILPVL~~~s~~ls~~i~~~~q~~dp~~k~~k~mm~~mPlmii~f~  161 (391)
                      +|                              ||++||+++++++|+++++.....   ++.++++.|++++|+++++++
T Consensus       108 ~D------------------------------p~~iLPii~~~~~~~~~~~~~~~~---~~~~~~k~m~~~~p~~~~~~~  154 (181)
T TIGR03592       108 PD------------------------------PYYILPILMGATMFLQQKLSPSGP---PDPAQQKIMMYIMPLMFLFFF  154 (181)
T ss_pred             cc------------------------------HHHHHHHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHHHHHHHH
Confidence            77                              689999999999999998854322   223467888899999999999


Q ss_pred             hhhhhHhHHHHHHhhHHHHHHHHHHHH
Q 016329          162 LSVPSGLSLYWFTNNLLSTAQQVWLQK  188 (391)
Q Consensus       162 ~~~PaGL~LYWitSNlfsIiQq~iL~k  188 (391)
                      .++|+|+.+||++||+|+++|++++++
T Consensus       155 ~~~pa~l~lYw~~s~~~sl~Q~~~l~~  181 (181)
T TIGR03592       155 LSFPAGLVLYWVVSNLFTIIQQLIINR  181 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999874

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.

>PRK02944 OxaA-like protein precursor; Validated

Probab=100.00  E-value=3.7e-39  Score=310.35  Aligned_cols=152  Identities=30%  Similarity=0.690  Sum_probs=135.3

Q ss_pred             hhhhhchhHHHHHHHhhhC----HHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 016329            2 AMRSLAPQVKAIQERYAGD----QERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIP   77 (391)
Q Consensus         2 kMq~lQPem~kIqeKYk~D----qek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~~gl~~~gFlWi~   77 (391)
                      +|+++||||++||+||++|    ++++++|+++|||||||||++||+|+|+|+|||||+|++|+++.+  +.+++|+|+ 
T Consensus        87 km~~iqPe~~~iq~kyk~~~~~~~~k~~~e~~~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~~~~--l~~~~flW~-  163 (255)
T PRK02944         87 AMQALQPEMQKLKEKYSSKDQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSE--ISKHSFLWF-  163 (255)
T ss_pred             HHHHccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhHH--HhhcCCCcc-
Confidence            7999999999999999864    577899999999999999999999999999999999999999864  678899999 


Q ss_pred             CCcCchhHhhhhcCCCccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHH
Q 016329           78 SLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMI  157 (391)
Q Consensus        78 dLs~pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d~l~~lILPVL~~~s~~ls~~i~~~~q~~dp~~k~~k~mm~~mPlmi  157 (391)
                      ||+.+|                              |+++||+++++++|++.+.......  .+..+++.|+++||+|+
T Consensus       164 dLs~~D------------------------------p~~iLPil~~~~~~~~~~~~~~~~~--~~~~~~~~m~~i~p~~~  211 (255)
T PRK02944        164 DLGQAD------------------------------PYYILPIVAGITTFIQQKLMMAGTA--GQNPQMAMMLWLMPIMI  211 (255)
T ss_pred             ccCcch------------------------------HHHHHHHHHHHHHHHHHHhcccCCC--CCCHHHHHHHHHHHHHH
Confidence            888776                              6899999999999999887533221  12246788999999999


Q ss_pred             HHHHhhhhhHhHHHHHHhhHHHHHHHHHHHH
Q 016329          158 GYFALSVPSGLSLYWFTNNLLSTAQQVWLQK  188 (391)
Q Consensus       158 i~f~~~~PaGL~LYWitSNlfsIiQq~iL~k  188 (391)
                      ++|++++|+||.+||++||+|+++|+++++.
T Consensus       212 ~~~~~~~Pagl~lYw~~s~~~~i~Q~~~l~~  242 (255)
T PRK02944        212 LIFAINFPAALSLYWVVGNIFMIAQTYLIKG  242 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999887

>PRK01001 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=2.2e-39  Score=344.70  Aligned_cols=171  Identities=30%  Similarity=0.612  Sum_probs=142.5

Q ss_pred             hhhhhchhHHHHHHHhhhCHHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhhhcccccccc--cccCC
Q 016329            2 AMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFF--WIPSL   79 (391)
Q Consensus         2 kMq~lQPem~kIqeKYk~Dqek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~~gl~~~gFl--Wi~dL   79 (391)
                      ||+.|||+|++||+||++|++++|+|||+|||+|||||++||||+||||||||+||++|+++..  +...+|+  |++||
T Consensus       604 KMq~LQPemqeIQeKYKdD~qK~QqEmMkLYKe~GVNPl~GCLPmLIQmPIFfALY~vL~~sie--LRgasFLpgWI~DL  681 (795)
T PRK01001        604 RMQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKSSFL--LRGASFIPGWIDNL  681 (795)
T ss_pred             HHHHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhHH--hcCCchhhhhHhhc
Confidence            7999999999999999999999999999999999999999999999999999999999998763  5567887  99999


Q ss_pred             cCchhHhhhhcCCCccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhccC--CCCcccHHHHHHHHHHHHHH
Q 016329           80 AGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQ--NNDPNMKSSQALTNFLPLMI  157 (391)
Q Consensus        80 s~pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d~l~~lILPVL~~~s~~ls~~i~~~~q--~~dp~~k~~k~mm~~mPlmi  157 (391)
                      +.||++        +.|.++..    -+|  +  ++.||||++++++|++++++....  ...+++.+++.|+++||+|+
T Consensus       682 SapDpl--------f~~~~~i~----FiG--d--~i~ILPILmgvtmflqqkls~~~~~dp~t~qq~Qqk~M~~iMPImf  745 (795)
T PRK01001        682 TAPDVL--------FSWETPIW----FIG--N--EFHLLPILLGVVMFAQQKISSLKRKGPVTDQQRQQEAMGTMMALLF  745 (795)
T ss_pred             cCCCcc--------cccccccc----ccc--c--chhHHHHHHHHHHHHHHHhcccCCCCccchhHHHHHHHHHHHHHHH
Confidence            999853        12222110    011  2  568999999999999998864321  11223345667888999999


Q ss_pred             HHHHhhhhhHhHHHHHHhhHHHHHHHHHHHHhc
Q 016329          158 GYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFG  190 (391)
Q Consensus       158 i~f~~~~PaGL~LYWitSNlfsIiQq~iL~k~~  190 (391)
                      ++|++++|+||+|||++||+|+++||+++++.+
T Consensus       746 ~f~f~~fPSGL~LYW~tSNl~SI~QQ~iI~k~~  778 (795)
T PRK01001        746 TFMFYNFPSGLNIYWLSSMLLGVIQQWVTNKIL  778 (795)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999964

>PRK00247 putative inner membrane protein translocase component YidC; Validated

Probab=100.00  E-value=1.6e-38  Score=324.11  Aligned_cols=204  Identities=24%  Similarity=0.367  Sum_probs=148.7

Q ss_pred             hhhhhchhHHHHHHHhhhC-----HHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhh--hcccccccc
Q 016329            2 AMRSLAPQVKAIQERYAGD-----QERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVAD--EGLLTEGFF   74 (391)
Q Consensus         2 kMq~lQPem~kIqeKYk~D-----qek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~--~gl~~~gFl   74 (391)
                      +|+.|||+|++||+||+++     ++++++|+++|||+|||||++||||+|||+|||||||++|++|+.  +|+....+.
T Consensus        60 km~~lqPel~~iq~kyk~~~d~e~~~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~ma~~~~Gl~~~~~~  139 (429)
T PRK00247         60 TAAHIRPKRKALREEYKGKTDEASIRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQ  139 (429)
T ss_pred             HHHHcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhccccCCcccccccc
Confidence            6889999999999999865     456899999999999999999999999999999999999999985  466554455


Q ss_pred             cccCCcCchh---HhhhhcCCCccccccccC-CCCC--CCCchhhHHHHHHHHHHHH--HHHHHHHhhccC--C---CCc
Q 016329           75 WIPSLAGPTT---IAARQNGSGISWLFPFVD-GHPP--LGWSDTFAYLVLPVLLVVS--QYISVKIIQSSQ--N---NDP  141 (391)
Q Consensus        75 Wi~dLs~pd~---i~a~~~g~~is~l~p~~~-g~~~--Lg~~d~l~~lILPVL~~~s--~~ls~~i~~~~q--~---~dp  141 (391)
                      |+.-|+.++-   +.++.+|.+++..+-+.. +..-  .+.+| +.+++||++++++  +++++.++...+  .   ..+
T Consensus       140 ~ig~l~~~~v~sfl~a~~fGvpL~~~~sm~~e~~~~~~~~~~~-v~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~  218 (429)
T PRK00247        140 PIGFLTSEEVESFLQGRVFNVPLPAYVSMPAEQLAYLGTTQAT-VLAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSG  218 (429)
T ss_pred             ccccCCHHHHHHHHhccccCCCcccccccchhhhhhccCCccc-hHHHHHHHHHHHHHHHHHHHHHHhhcccccccccch
Confidence            5555555442   234566766653321110 0000  12233 3468888665554  556666543321  1   112


Q ss_pred             ----ccHHHHHHHHHHHHHHHHHHhh--hhhHhHHHHHHhhHHHHHHHHHHHHhcCCCCCcccchhhhhhh
Q 016329          142 ----NMKSSQALTNFLPLMIGYFALS--VPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDE  206 (391)
Q Consensus       142 ----~~k~~k~mm~~mPlmii~f~~~--~PaGL~LYWitSNlfsIiQq~iL~k~~~~k~p~~~~~~~~~~~  206 (391)
                          +.++|..|++++|+|+++++++  +|+||+|||++||+|+++||++++.++..++|+.+..+.+..+
T Consensus       219 ~~~~~~k~m~~m~~~~Pim~~~~g~~~~~PaallLYWv~snlwtl~Qq~i~~~~l~~~~P~~~~~~~~~~~  289 (429)
T PRK00247        219 FAVGMLKFLIVMAILAPIFPLSLGLTGPFPTAIALYWVANNLWTLIQNIIMYLILERKYPLTDEFKEHHAE  289 (429)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence                2233555667899999988876  7999999999999999999999999999999999988876554

>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes

Probab=100.00  E-value=9.7e-39  Score=293.73  Aligned_cols=164  Identities=38%  Similarity=0.735  Sum_probs=147.3

Q ss_pred             hhhhhchhHHHHHHHhhhCHHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhh-hcccccccccccCCc
Q 016329            2 AMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVAD-EGLLTEGFFWIPSLA   80 (391)
Q Consensus         2 kMq~lQPem~kIqeKYk~Dqek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~-~gl~~~gFlWi~dLs   80 (391)
                      +|++++|++++||+||++|++++++|+++|||||||||++||+|+|+|+||||++|++||+++. +|+.++||+|++||+
T Consensus        31 k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~~~~p~~~~~~~liq~Pif~~~~~~lr~~~~~~~~~~~g~lw~~dL~  110 (198)
T PF02096_consen   31 KMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKHGVNPLKGCLPPLIQIPIFIGLFRALRRMAEVPSLATGGFLWFPDLT  110 (198)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCceeChHhcC
Confidence            7899999999999999999999999999999999999999999999999999999999999986 677889999999999


Q ss_pred             CchhHhhhhcCCCccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhc--cCCCCcccHHHHHHHHHHHHHHH
Q 016329           81 GPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQS--SQNNDPNMKSSQALTNFLPLMIG  158 (391)
Q Consensus        81 ~pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d~l~~lILPVL~~~s~~ls~~i~~~--~q~~dp~~k~~k~mm~~mPlmii  158 (391)
                      .||..                         ..+|+++||+++++++++++++..+  .....+....++.|++++|++++
T Consensus       111 ~~D~~-------------------------~~~p~~iLPil~~~~~~~~~~~~~~~~~~~~~~~~~~~k~m~~~~~~~~~  165 (198)
T PF02096_consen  111 APDPT-------------------------MGLPYFILPILAGASMFLNQELSMKNSKQKSPQQAKMMKIMLYIMPLMFL  165 (198)
T ss_pred             CCCcc-------------------------chhHHHHHHHHHHHHHHHHHHHHHhccccCCccccHHHHHHHHHHHHHHH
Confidence            99831                         1248899999999999999998653  22233445678889999999999


Q ss_pred             HHHhhhhhHhHHHHHHhhHHHHHHHHHHHHhc
Q 016329          159 YFALSVPSGLSLYWFTNNLLSTAQQVWLQKFG  190 (391)
Q Consensus       159 ~f~~~~PaGL~LYWitSNlfsIiQq~iL~k~~  190 (391)
                      ++++.+|+|+.+||++||+|+++|++++++.+
T Consensus       166 ~~~~~~Paal~lYw~~s~~~~l~Q~~~l~~~~  197 (198)
T PF02096_consen  166 FFTSFFPAALFLYWITSNLFSLLQTLILRRPF  197 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999864

Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane

>PRK01318 membrane protein insertase; Provisional

Probab=100.00  E-value=1.8e-38  Score=331.48  Aligned_cols=159  Identities=34%  Similarity=0.698  Sum_probs=137.8

Q ss_pred             hhhhhchhHHHHHHHhhhCHHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhhhcccccccc-cccCCc
Q 016329            2 AMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFF-WIPSLA   80 (391)
Q Consensus         2 kMq~lQPem~kIqeKYk~Dqek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~~gl~~~gFl-Wi~dLs   80 (391)
                      ||+.+||+|++||+||++|++++++|||+|||+|||||++||||+|+||||||++|++|++...  +...+|+ ||+||+
T Consensus       351 km~~lqP~~~~i~~kyk~d~~k~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~e--l~~~~fl~Wi~DLs  428 (521)
T PRK01318        351 KMKVLQPKMQELKEKYKDDPQKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIE--LRHAPFIGWIHDLS  428 (521)
T ss_pred             HHHHhhHHHHHHHHHhHhhHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHHH--hccCchheeecccc
Confidence            7999999999999999999999999999999999999999999999999999999999999874  6677887 999999


Q ss_pred             CchhHhhhhcCCCccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHH
Q 016329           81 GPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYF  160 (391)
Q Consensus        81 ~pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d~l~~lILPVL~~~s~~ls~~i~~~~q~~dp~~k~~k~mm~~mPlmii~f  160 (391)
                      .||+.                         ..+...+||+++++++|++++++...  .+|   +++.+|.+||+++++|
T Consensus       429 ~~Dp~-------------------------~il~~~~lPil~~~~~~~~~~l~~~~--~~~---~q~kim~~mpi~~~~~  478 (521)
T PRK01318        429 APDPY-------------------------FILHIGLLPILMGITMFLQQKLNPTP--TDP---MQAKIMKFMPLIFTFF  478 (521)
T ss_pred             ccccc-------------------------hhHHHHHHHHHHHHHHHHHHHhcCCC--CCH---HHHHHHHHHHHHHHHH
Confidence            98820                         00123455999999999999886432  233   4556677799999999


Q ss_pred             HhhhhhHhHHHHHHhhHHHHHHHHHHHHhcCC
Q 016329          161 ALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGA  192 (391)
Q Consensus       161 ~~~~PaGL~LYWitSNlfsIiQq~iL~k~~~~  192 (391)
                      ++++|+||.|||++||+|+++|++++++.+..
T Consensus       479 ~~~~PagL~lYW~~sn~~si~Q~~~l~~~~~~  510 (521)
T PRK01318        479 FLSFPAGLVLYWIVNNLLTIIQQYLINRRLEK  510 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            99999999999999999999999999996543

>PRK03449 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=5.2e-38  Score=309.04  Aligned_cols=188  Identities=27%  Similarity=0.452  Sum_probs=134.2

Q ss_pred             hhhhhchhHHHHHHHhhhCHHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhhh--cccc-----cccc
Q 016329            2 AMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADE--GLLT-----EGFF   74 (391)
Q Consensus         2 kMq~lQPem~kIqeKYk~Dqek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~~--gl~~-----~gFl   74 (391)
                      +|+++||++++||+||++|++++++|+++|||+|||||++||+|+|||+|||||+|++||+++..  |+..     +.+.
T Consensus        60 km~~lqP~l~~iq~kyk~~~~~~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~  139 (304)
T PRK03449         60 KMQELQPQIKALQKKYGNDRQKMALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENR  139 (304)
T ss_pred             HHHHccHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhcc
Confidence            79999999999999999999999999999999999999999999999999999999999998642  2111     0000


Q ss_pred             cccC--CcCc---hhHhhhhcCCCccccccc----cCCCCCCCCchh-hHHHHHHHHHHHHHHHHHHHhhccCC----CC
Q 016329           75 WIPS--LAGP---TTIAARQNGSGISWLFPF----VDGHPPLGWSDT-FAYLVLPVLLVVSQYISVKIIQSSQN----ND  140 (391)
Q Consensus        75 Wi~d--Ls~p---d~i~a~~~g~~is~l~p~----~~g~~~Lg~~d~-l~~lILPVL~~~s~~ls~~i~~~~q~----~d  140 (391)
                      +.+.  +...   .-+.+.++|.+++..++.    ++....++..|. +..+++|+++++++|++++++...+.    .+
T Consensus       140 ~~~~~~~~~~~~~sFl~~~~~g~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~~~~~  219 (304)
T PRK03449        140 NTPNYVFSAEDVQSFLDARLFGAPLSAYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVARQSAEAAAN  219 (304)
T ss_pred             ccccccccHHHHHHHhhhhhcCCChHhhhcccchhhchhcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccC
Confidence            1000  0000   001233445554321110    001001222232 24567889999999999887643221    23


Q ss_pred             cccH-HHHHHHHHHHHHHHHHHhhhhhHhHHHHHHhhHHHHHHHHHHHHh
Q 016329          141 PNMK-SSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKF  189 (391)
Q Consensus       141 p~~k-~~k~mm~~mPlmii~f~~~~PaGL~LYWitSNlfsIiQq~iL~k~  189 (391)
                      +++. +++.|+++||+|+++|++++|+||.|||++||+|+++||+++++.
T Consensus       220 ~~~~~m~k~M~~~mP~m~~~~~~~~Pagl~LYW~~snl~~i~Qq~~i~~~  269 (304)
T PRK03449        220 PQTAMMNKLALWVFPLGVLVGGPFLPLAILLYWVSNNIWTFGQQHYVFGK  269 (304)
T ss_pred             cchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3333 457889999999999999999999999999999999999999874

>PRK01622 OxaA-like protein precursor; Validated

Probab=100.00  E-value=5.8e-38  Score=302.15  Aligned_cols=154  Identities=30%  Similarity=0.575  Sum_probs=133.5

Q ss_pred             hhhhhchhHHHHHHHhhh--CH---HHHHHHHHHHHHHhCCCCCc-ChhHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 016329            2 AMRSLAPQVKAIQERYAG--DQ---ERIQLETARLYKLAGINPLA-GCLPTLATIPVWIGLYRALSNVADEGLLTEGFFW   75 (391)
Q Consensus         2 kMq~lQPem~kIqeKYk~--Dq---ek~qqEm~kLYKk~GVNPla-GCLPmLIQIPIFigLY~vLr~~a~~gl~~~gFlW   75 (391)
                      ||+++||++++||+||++  |+   +++++|+++|||||||||++ ||+|+|+|+|||||+|++||++.  ++.++||+|
T Consensus        92 km~~iqP~l~~iq~kyk~~~d~~~~~~~~~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif~~lf~~lr~~~--~l~~~~flW  169 (256)
T PRK01622         92 KMAVMKPELDKIQAKLKVTKDLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRTE--EIASHSFLW  169 (256)
T ss_pred             HHHHhCHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHhCh--hccCCCcee
Confidence            688999999999999986  43   35789999999999999999 99999999999999999999986  477899999


Q ss_pred             ccCCcCchhHhhhhcCCCccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHH
Q 016329           76 IPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPL  155 (391)
Q Consensus        76 i~dLs~pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d~l~~lILPVL~~~s~~ls~~i~~~~q~~dp~~k~~k~mm~~mPl  155 (391)
                      + ||+.+|                                +|||+++++++++++++++.......+.++++.|+++||+
T Consensus       170 ~-dLs~~D--------------------------------~ILPil~~~~~~~~~~~~~~~~~~~~q~~~~k~m~~~~pi  216 (256)
T PRK01622        170 F-NLGHAD--------------------------------HILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGIMMPA  216 (256)
T ss_pred             e-CCcchh--------------------------------HHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHH
Confidence            9 776543                                6899999999999988765322222233467888999999


Q ss_pred             HHHHHHhhhhhHhHHHHHHhhHHHHHHHHHHHHhc
Q 016329          156 MIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFG  190 (391)
Q Consensus       156 mii~f~~~~PaGL~LYWitSNlfsIiQq~iL~k~~  190 (391)
                      +++++++++|+||++||++||+|+++|++++++.+
T Consensus       217 ~~~~~~~~~Psgl~lYW~~snl~si~Q~~~l~~~~  251 (256)
T PRK01622        217 MILFMSFAAPSALVLYWITGGLFLMGQTIVLRKVM  251 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999965

>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

Probab=100.00  E-value=7.1e-38  Score=309.17  Aligned_cols=159  Identities=36%  Similarity=0.686  Sum_probs=140.0

Q ss_pred             hhhhhchhHHHHHHHhh-hCHHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhhhcccccccc-cccCC
Q 016329            2 AMRSLAPQVKAIQERYA-GDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFF-WIPSL   79 (391)
Q Consensus         2 kMq~lQPem~kIqeKYk-~Dqek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~~gl~~~gFl-Wi~dL   79 (391)
                      +|+.+||+|++||+||+ +|++++|+|+++|||||||||++||+|+|+|+||||++|+++++...  +...+|+ |+.|+
T Consensus       138 km~~lqP~~~~i~~kyk~~~~~~~q~e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~~~--l~~~~f~~w~~dl  215 (314)
T COG0706         138 KMQELQPKIKEIQEKYKGTDKQKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTVE--LRGAPFLGWITDL  215 (314)
T ss_pred             HHHHhChhHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHhccc--ccccchhhhhhcc
Confidence            79999999999999999 99999999999999999999999999999999999999999999874  5566676 99888


Q ss_pred             cCchhHhhhhcCCCccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHH
Q 016329           80 AGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGY  159 (391)
Q Consensus        80 s~pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d~l~~lILPVL~~~s~~ls~~i~~~~q~~dp~~k~~k~mm~~mPlmii~  159 (391)
                      +.+|+                          +  ..+++|+++++++|++++++..... +++.++++.|+++||+++.+
T Consensus       216 ~~~dp--------------------------~--~~~~~pii~gv~~f~q~~ls~~~~~-~~q~~~~~~~~~impi~f~~  266 (314)
T COG0706         216 SLPDP--------------------------D--YILLLPILAGVTMFLQQKLSPRNLS-TPQDPQQKKMMYIMPIIFTF  266 (314)
T ss_pred             cCCCC--------------------------c--hhhHHHHHHHHHHHHHHHhccccCC-cccCHHHHHHHHHHHHHHHH
Confidence            87762                          1  2247799999999999998765332 33445888999999999999


Q ss_pred             HHhhhhhHhHHHHHHhhHHHHHHHHHHHHhcC
Q 016329          160 FALSVPSGLSLYWFTNNLLSTAQQVWLQKFGG  191 (391)
Q Consensus       160 f~~~~PaGL~LYWitSNlfsIiQq~iL~k~~~  191 (391)
                      +++++|+||.|||++||+|+++||+++++.+.
T Consensus       267 ~~~~~PaGL~LYW~~~n~fsi~Qq~ii~~~~~  298 (314)
T COG0706         267 FFFNFPAGLVLYWIVSNLFSILQQYILNKPLE  298 (314)
T ss_pred             HHHHhHHHHHHHHHHhHHHHHHHHHHHhhhhh
Confidence            99999999999999999999999999999643

>PRK01315 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=1.8e-37  Score=307.96  Aligned_cols=184  Identities=30%  Similarity=0.521  Sum_probs=136.1

Q ss_pred             hhhhhchhHHHHHHHhhhCHHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCcC
Q 016329            2 AMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAG   81 (391)
Q Consensus         2 kMq~lQPem~kIqeKYk~Dqek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~~gl~~~gFlWi~dLs~   81 (391)
                      +|+++||||++||+||++|++++++|+++|||+|||||++||||+|+|+||||++|++|++++..+  ....+|.+++..
T Consensus        70 km~~lqPe~~~iq~kyk~~~~~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~~~~~~~--~~~~~~~~~~~~  147 (329)
T PRK01315         70 NMQEIQPKMKKIQEKYKGDRERMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDSAASRG--DGIGPINPPLLE  147 (329)
T ss_pred             HHHHccHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccccchhhhHHH
Confidence            799999999999999999999999999999999999999999999999999999999999876421  112233333321


Q ss_pred             chhHhhhhcCCCccccccccCCCCCCCCch-hhHHHHHHHHHHHHHHHHHHHh-hcc----CCCCcccHHHHHHHHHHHH
Q 016329           82 PTTIAARQNGSGISWLFPFVDGHPPLGWSD-TFAYLVLPVLLVVSQYISVKII-QSS----QNNDPNMKSSQALTNFLPL  155 (391)
Q Consensus        82 pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d-~l~~lILPVL~~~s~~ls~~i~-~~~----q~~dp~~k~~k~mm~~mPl  155 (391)
                      +. ..+..+|.+++..  |... ...|..+ .+.+++||+++++++|++++.+ .+.    ...++..++++.|+++||+
T Consensus       148 s~-~~~~~fg~~L~~~--f~~~-~~~~~~~~~ii~~iL~il~~~~~~~~q~~~~~k~~~~~~~~~~~~~~~K~M~~imPi  223 (329)
T PRK01315        148 SF-RHAHIFGAPLAAT--FLQA-LNAGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPPEAKTGPMAQQQKMLLYLFPL  223 (329)
T ss_pred             hh-hcccccccccccc--cccc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCChhHHHHHHHHHHHHH
Confidence            11 0111223322211  1000 0012222 2456899999999999987543 211    1234555678889999999


Q ss_pred             HHHHHHhhhhhHhHHHHHHhhHHHHHHHHHHHHhcC
Q 016329          156 MIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGG  191 (391)
Q Consensus       156 mii~f~~~~PaGL~LYWitSNlfsIiQq~iL~k~~~  191 (391)
                      |+++|++++|+||+|||++||+|+++|++++.+.++
T Consensus       224 m~~~~~~~fPaGL~LYW~~snl~si~Qq~~v~r~~p  259 (329)
T PRK01315        224 MFLVSGIAFPVGVLFYWLTSNVWTMGQQFYVIRNNP  259 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999888654

>PRK02463 OxaA-like protein precursor; Provisional

Probab=100.00  E-value=2.2e-37  Score=305.14  Aligned_cols=153  Identities=28%  Similarity=0.471  Sum_probs=132.2

Q ss_pred             hhhhhchhHHHHHHHhhhC-----HHHHHHHHHHHHHHhCCCCCc--ChhHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 016329            2 AMRSLAPQVKAIQERYAGD-----QERIQLETARLYKLAGINPLA--GCLPTLATIPVWIGLYRALSNVADEGLLTEGFF   74 (391)
Q Consensus         2 kMq~lQPem~kIqeKYk~D-----qek~qqEm~kLYKk~GVNPla--GCLPmLIQIPIFigLY~vLr~~a~~gl~~~gFl   74 (391)
                      ||+.+||||++||+||+++     ++++++|+++|||||||||++  ||||+|||+|||||+|+++++..  ++.+++|+
T Consensus        92 KM~~lqPe~~~Iq~Kyk~~~~~~~~~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai~~~~--~l~~~~fl  169 (307)
T PRK02463         92 KMAYLKPVFEPINERLKNATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAAQYTK--GVSTSTFL  169 (307)
T ss_pred             HHHHhChhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHHhcch--hhccCCee
Confidence            7899999999999999863     345689999999999999998  89999999999999999999764  68889999


Q ss_pred             cccCCcCchhHhhhhcCCCccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHH
Q 016329           75 WIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLP  154 (391)
Q Consensus        75 Wi~dLs~pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d~l~~lILPVL~~~s~~ls~~i~~~~q~~dp~~k~~k~mm~~mP  154 (391)
                      |+ ||+.||                                ++||+++++++++++.++....+ +.+.++|+.|+++||
T Consensus       170 wi-dL~~p~--------------------------------~iLpii~~v~~~~q~~~~~~~~~-~~q~~~mk~m~~~~P  215 (307)
T PRK02463        170 GI-DLGSPS--------------------------------LVLTAIIGVLYFFQSWLSMMGVP-EEQREQMKAMMYMMP  215 (307)
T ss_pred             ee-ecCchh--------------------------------HHHHHHHHHHHHHHHHHhccCCC-hhHHHHHHHHHHHHH
Confidence            99 776543                                68899999999988877543322 223456888999999


Q ss_pred             HHHHHHHhhhhhHhHHHHHHhhHHHHHHHHHHHHhc
Q 016329          155 LMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFG  190 (391)
Q Consensus       155 lmii~f~~~~PaGL~LYWitSNlfsIiQq~iL~k~~  190 (391)
                      +|+++|++++|+||+|||++||+|+++|++++++++
T Consensus       216 im~~~~~~~~PagL~lYW~~snlfsi~Q~~i~~~~~  251 (307)
T PRK02463        216 IMMVVFSFSSPAGVGLYWLVGGFFSIIQQLITTYIL  251 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999865

>PRK02201 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=2e-36  Score=303.07  Aligned_cols=164  Identities=20%  Similarity=0.427  Sum_probs=133.4

Q ss_pred             hhhhhchhHHHHHHHhhhC------HHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 016329            2 AMRSLAPQVKAIQERYAGD------QERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFW   75 (391)
Q Consensus         2 kMq~lQPem~kIqeKYk~D------qek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~~gl~~~gFlW   75 (391)
                      +|+++||||++||+||++|      ++++++|+++|||||||||++||||+|||+|||||+|++|+.+.+  +....|+|
T Consensus       161 km~~lqPel~~Iq~Kyk~~~~d~~~~~k~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~~~~~--l~~~~flg  238 (357)
T PRK02201        161 KQEELQGKKAKIDAKYKDYKKDKQMKQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLPS--IKVTTWLG  238 (357)
T ss_pred             HHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhHh--hccCCCcc
Confidence            7999999999999999876      778999999999999999999999999999999999999999864  66789999


Q ss_pred             ccCCcCchhHhhhhcCCCccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhh----ccC-----CC--CcccH
Q 016329           76 IPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQ----SSQ-----NN--DPNMK  144 (391)
Q Consensus        76 i~dLs~pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d~l~~lILPVL~~~s~~ls~~i~~----~~q-----~~--dp~~k  144 (391)
                      + ||+.+|..          .+           +.+.++++++++++++++++++.+++    +..     ..  .++++
T Consensus       239 i-dLs~~~~~----------~~-----------~~~~~~~l~l~ii~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k  296 (357)
T PRK02201        239 I-DLSATSWQ----------EI-----------FAGNWIYLPILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALK  296 (357)
T ss_pred             c-ccCCCChh----------hh-----------ccccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCchhhhhHH
Confidence            9 88876521          00           01223566777777777777765532    111     11  12234


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHhHHHHHHhhHHHHHHHHHHHHh
Q 016329          145 SSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKF  189 (391)
Q Consensus       145 ~~k~mm~~mPlmii~f~~~~PaGL~LYWitSNlfsIiQq~iL~k~  189 (391)
                      .|+.|+.+||+++++|++++|+||.|||++||+|+++||++++++
T Consensus       297 ~~~~m~~impi~~~~~~~~~PaGL~LYW~~snl~tI~Qq~~i~~~  341 (357)
T PRK02201        297 KQNKTQNIISIVFIFFGVIFAAGVQIYWIIGGIWTILQTLGIHYF  341 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577899999999999999999999999999999999999999984

>PRK02654 putative inner membrane protein translocase component YidC; Provisional

Probab=99.96  E-value=4.1e-28  Score=239.93  Aligned_cols=196  Identities=31%  Similarity=0.517  Sum_probs=129.6

Q ss_pred             hhhhhchhHH----HHHHHhhhCHHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhh------------
Q 016329            2 AMRSLAPQVK----AIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVAD------------   65 (391)
Q Consensus         2 kMq~lQPem~----kIqeKYk~Dqek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~------------   65 (391)
                      +|+.+||+|+    +||+||++|++++++||++|||||| ||++||||+|||+||||+||++||...-            
T Consensus        55 KM~~LQPemqkk~~eIqeKYKdDpqk~QqEmmkLYKE~G-NPlaGCLP~LIQmPIF~aLY~~LR~spf~~~~y~~~l~i~  133 (375)
T PRK02654         55 RMKIAQPVMQKRQAEIQERYKNDPQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATLRGSPFADVNYTVNLQVL  133 (375)
T ss_pred             HHHHhCchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHcC-CChhhHHHHHHHHHHHHHHHHHHHhCccccccceeecccC
Confidence            7999999985    7999999999999999999999999 9999999999999999999999998421            


Q ss_pred             --h--------ccc--------cc--ccccccCCcC-----------------------------------ch-------
Q 016329           66 --E--------GLL--------TE--GFFWIPSLAG-----------------------------------PT-------   83 (391)
Q Consensus        66 --~--------gl~--------~~--gFlWi~dLs~-----------------------------------pd-------   83 (391)
                        +        .+.        ++  +|--+..|..                                   |.       
T Consensus       134 p~~qi~~v~~~~~~~~~~~i~~~~~~h~~~~a~~p~g~k~~vg~~~~~~~q~~~g~~~~~~~~~~~~~~~~p~~~v~kg~  213 (375)
T PRK02654        134 PSEQIAAVQPQPFKSKPQNIFITDGVHFPVIASLPGGTKLGVGESVKIQLQTTEGKPFSQLLAEYPNSKLSPTWKVTKGE  213 (375)
T ss_pred             CHHHHhhhcCCCcCCCCceEEEecCccceEEEEcCCCCcccccceeEEEEecCCCCcHHHHHhcCCccccCceeEEecCc
Confidence              0        000        00  1100000000                                   00       


Q ss_pred             -------------------hHhhhhcCCCccccccccCCCCCCCCc--h---hhHHHHHHHHHHHHHHHHHHHhhccCCC
Q 016329           84 -------------------TIAARQNGSGISWLFPFVDGHPPLGWS--D---TFAYLVLPVLLVVSQYISVKIIQSSQNN  139 (391)
Q Consensus        84 -------------------~i~a~~~g~~is~l~p~~~g~~~Lg~~--d---~l~~lILPVL~~~s~~ls~~i~~~~q~~  139 (391)
                                         ++.+.+.|..-.-.|-|....+..|..  |   .|-++++-+..+++.|+|..++......
T Consensus       214 ~~~~~~~~g~~~al~pgd~ti~~~ipg~aa~~gflfi~alg~vg~~~~dg~i~wdi~~mi~~fg~sl~~~q~lsg~~~~~  293 (375)
T PRK02654        214 ERVKVSEDGTIEALAPGDATIQGTIPGLAANSGFLFIKALGQVGFYDVDGAINWDILIMVLGFGVSLYLSQVLSGQGMPA  293 (375)
T ss_pred             eeEEECCCCcEEEecCCceEEEEeecceecccCceehHhhcccCccCCCCceeHHHHHHHHHhhhhhhhhHhhhcCCCCC
Confidence                               000000110000000010000112221  1   1345666677788899988776443333


Q ss_pred             CcccHHHHHHHHHHHHHH--HHHHhhhhhHhHHHHHHhhHHHHHHHHHHHHhcCCCCCcccchhhhhhh
Q 016329          140 DPNMKSSQALTNFLPLMI--GYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDE  206 (391)
Q Consensus       140 dp~~k~~k~mm~~mPlmi--i~f~~~~PaGL~LYWitSNlfsIiQq~iL~k~~~~k~p~~~~~~~~~~~  206 (391)
                      +|   +++.+..+.|+||  +|+++.+|+|+++||++.|+|..+|+++|.+     .|+.+-..++..+
T Consensus       294 ~~---qq~t~nkitpv~~sgmflffplpagvllym~ianifq~~qt~~l~r-----eplpenlqk~~~~  354 (375)
T PRK02654        294 NP---QQSTANKITPVMFSGMFLFFPLPAGVLLYMVIANIFQTLQTFLLSR-----EPLPENLQKILDE  354 (375)
T ss_pred             Ch---hHHHHHhhhhHHHhhhHhcccchhHHHHHHHHHHHHHHHHHHHHhc-----CcChHHHHHHHHH
Confidence            43   5678888999987  4666789999999999999999999999997     7888766666554

>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=6.3e-15  Score=149.40  Aligned_cols=152  Identities=20%  Similarity=0.406  Sum_probs=125.3

Q ss_pred             hhhhhchhHHHHHHHhhh------CHHHHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhh--hccccccc
Q 016329            2 AMRSLAPQVKAIQERYAG------DQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVAD--EGLLTEGF   73 (391)
Q Consensus         2 kMq~lQPem~kIqeKYk~------Dqek~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~--~gl~~~gF   73 (391)
                      ++..+.|+|..+.++.+.      .....+++++.+|++|||+| ....-+++|.|+|++.|.+||.|+.  +++.+.|+
T Consensus       130 kls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~~~l~~~~~v~~-~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~g~  208 (372)
T KOG1239|consen  130 KLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQKLLVKKYGVKP-KQLALPVVQGPLFISFFMAIRVMAVPVPSFTTGGL  208 (372)
T ss_pred             HHhhcCcccHHHHHHHHhhhccccchHHHHHHHHhhhhhcCCCc-chhhhhhhcchhHHHHHHHHHHhhccccccchhhH
Confidence            567799999999999863      12345779999999999999 9888888999999999999999985  35667799


Q ss_pred             ccccCCcCchhHhhhhcCCCccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhcc-CCCCcccHHHHHHHHH
Q 016329           74 FWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSS-QNNDPNMKSSQALTNF  152 (391)
Q Consensus        74 lWi~dLs~pd~i~a~~~g~~is~l~p~~~g~~~Lg~~d~l~~lILPVL~~~s~~ls~~i~~~~-q~~dp~~k~~k~mm~~  152 (391)
                      +|++||+.+|                              +++++|++..++++..++..... .........++.+..+
T Consensus       209 ~wf~dLt~~d------------------------------p~~ilp~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (372)
T KOG1239|consen  209 LWFPDLTGPD------------------------------PLYILPGITLATLTLFIELGAETGLSSSKLLPAMKSFIRI  258 (372)
T ss_pred             HhcccccccC------------------------------cchhhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHH
Confidence            9999998887                              67999999998888877663211 1112334467888999


Q ss_pred             HHHHHHHHHhhhhhHhHHHHHHhhHHHHHHHHHHHH
Q 016329          153 LPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQK  188 (391)
Q Consensus       153 mPlmii~f~~~~PaGL~LYWitSNlfsIiQq~iL~k  188 (391)
                      +|++++.++.++|.++++||+    |+++|..+++.
T Consensus       259 ~~ll~~~~t~~~~~a~~~ywl----~s~~~~~vlr~  290 (372)
T KOG1239|consen  259 LPLLSLASTMQFPSAIFVYWL----FSLVQGLVLRS  290 (372)
T ss_pred             hhhhhhhhhhhhhhhHHhhhh----hHHHHHHHhHH
Confidence            999999999999999999999    99999999776

>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.63  E-value=5.7e-08  Score=99.06  Aligned_cols=180  Identities=19%  Similarity=0.162  Sum_probs=154.5

Q ss_pred             hhhhchhHHHHHHHhhhCHH--HHHHHHHHHHHHhCCCCCcChhHHHHHHHHHHHHHHHHHhhhhhcccccccccccCCc
Q 016329            3 MRSLAPQVKAIQERYAGDQE--RIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLA   80 (391)
Q Consensus         3 Mq~lQPem~kIqeKYk~Dqe--k~qqEm~kLYKk~GVNPlaGCLPmLIQIPIFigLY~vLr~~a~~gl~~~gFlWi~dLs   80 (391)
                      |..++|-...+...+...+.  .+|-++..+|+-.|++++++|++..+-||.+++.|.+.+. ...+....+++|++.+.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~p~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~-~~~akls~~~~~mp~~~  142 (372)
T KOG1239|consen   64 VATVSPIIEGILLALSSWRPVATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQ-KNEAKLSKIFPEMPSLG  142 (372)
T ss_pred             HHhhchhHHHHHHHhcccCchhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhh-hHHHHHhhcCcccHHHH
Confidence            56678888888888887765  8899999999999999999999999999999999999987 54566778999999999


Q ss_pred             CchhHhhhhcCCCccccccccCCCCCCCCc-hhhHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHH
Q 016329           81 GPTTIAARQNGSGISWLFPFVDGHPPLGWS-DTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGY  159 (391)
Q Consensus        81 ~pd~i~a~~~g~~is~l~p~~~g~~~Lg~~-d~l~~lILPVL~~~s~~ls~~i~~~~q~~dp~~k~~k~mm~~mPlmii~  159 (391)
                      .....++..++..++|..++...+.+.|+. +.+++.+++..+.++.|+..+.|.-.+...     +.....++|-+..+
T Consensus       143 ~~l~~a~~~~~~~~~~q~~~~~l~~~~~v~~~~l~~~v~q~~l~~sff~air~ma~~v~~f-----~t~g~~wf~dLt~~  217 (372)
T KOG1239|consen  143 EELGEAAQDNNALLSWQEEQKLLVKKYGVKPKQLALPVVQGPLFISFFMAIRVMAVPVPSF-----TTGGLLWFPDLTGP  217 (372)
T ss_pred             HHHHhhhccccchHHHHHHHHhhhhhcCCCcchhhhhhhcchhHHHHHHHHHHhhcccccc-----chhhHHhccccccc
Confidence            888788888888899998888888888988 888888999999999999999987433322     22377788989898


Q ss_pred             HHhhhhhHhHHHHHHhhHHHHHHHHHHHH
Q 016329          160 FALSVPSGLSLYWFTNNLLSTAQQVWLQK  188 (391)
Q Consensus       160 f~~~~PaGL~LYWitSNlfsIiQq~iL~k  188 (391)
                      ..+..+.++..||+++++..-.|+.....
T Consensus       218 dp~~ilp~it~~~~~~~~~~~~~~~~~~~  246 (372)
T KOG1239|consen  218 DPLYILPGITLATLTLFIELGAETGLSSS  246 (372)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHhhhhcc
Confidence            89999999999999999999999988873

>COG1422 Predicted membrane protein [Function unknown]

Probab=87.10  E-value=4.7  Score=38.56  Aligned_cols=59  Identities=20%  Similarity=0.274  Sum_probs=36.2

Q ss_pred             hhhhhchhHHHHHHHhh-----hCH---HHH---HHHHHHHHHHhCCCCCc-ChhHHHHHHHHHHHHHHHHHhhh
Q 016329            2 AMRSLAPQVKAIQERYA-----GDQ---ERI---QLETARLYKLAGINPLA-GCLPTLATIPVWIGLYRALSNVA   64 (391)
Q Consensus         2 kMq~lQPem~kIqeKYk-----~Dq---ek~---qqEm~kLYKk~GVNPla-GCLPmLIQIPIFigLY~vLr~~a   64 (391)
                      +|+++|-++++.|++++     +|.   +|+   |.|++....+-    ++ .+-||+.++++.|-.|-=++...
T Consensus        73 km~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~el----mk~qfkPM~~~~v~tI~~F~Wl~~~~  143 (201)
T COG1422          73 KMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQREL----MKMQFKPMLYISVLTIPFFAWLRWFV  143 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH----HHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999885     342   233   33444444332    11 45577766666666665555554

>PRK00247 putative inner membrane protein translocase component YidC; Validated

Probab=85.25  E-value=8.6  Score=40.69  Aligned_cols=31  Identities=10%  Similarity=0.022  Sum_probs=21.9

Q ss_pred             hhHHHHHHHHHHHHhcCCCCCcccchhhhhh
Q 016329          175 NNLLSTAQQVWLQKFGGAKDPMKQFSDIIKD  205 (391)
Q Consensus       175 SNlfsIiQq~iL~k~~~~k~p~~~~~~~~~~  205 (391)
                      +-+-+++..++++++|....++...-..-.+
T Consensus       262 tl~Qq~i~~~~l~~~~P~~~~~~~~~~~~~~  292 (429)
T PRK00247        262 TLIQNIIMYLILERKYPLTDEFKEHHAEQRA  292 (429)
T ss_pred             HHHHHHHHHHHHHHhcCCCcchHHHHHHHHH
Confidence            3345556679999999988888876555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00